Citrus Sinensis ID: 004971

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-
Protein Sequence
MKLQTIFCSLLYLLSAVFRATADEDSSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVKNEQCAFEDCHWLNETPNQRDWGAALEPEKVQCGV
Secondary Structure (PSIPRED)
cccEEEHHHHHHHHHHHHHcccccccccccEEEEEccccccccccEEEEcccccccccccEEEccccEEEEccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEcccccEEEEEcccccccccccccccccccccccccccccccccEEEccccEEEEEEEccccccccccccEEEEEEcccccEEEcccccccccccEEcccccEEEEEEEccccccccEEEEEEEEEEEEccccccEEEEcccccccEEcccccEEEEEEEcccccEEEEEEEccccEEEEcccccEEEEccccccccccEEcccccEEEEEEEEcccccEEEEEEEEcccccEEEEEEEEcccccccccEEEccccEEEEEEEEccccccccccEEEEEccccccccEEEccccccccEEEccccEEEEEEcccEEEEEcccccEEEEEccccccEEEcccccEEEEEEcccccccccccEEEEEEEEccccccccEEEcccccccccccEEcccccEEEEEEcccccccEEEEEccccccccEEEcccccccccccEEcccccEEEEEEEccccccccEEEEEEEccccccEEEEEccccccccccEEcccccEEEEEEEcccccccccccccccccccEEEEEEcccccEEEEcccccccccEEEcccccEEEEEEEEcccEEEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccccEEEEEccccccccccccEEcccccEEEccccccccccHHHHHccccccccccccccccccccccEEEEEEEcccccEEEEEEEccccccEEEEccccccccccccccccEEEEcccccccHEEEEcccccccccEEEEEEEcccccccccccEEEEEEEcccccEEEEEccccccccccEcccccEEEEEEEcccccEEEEEcccccEEEEEEccccccEEEEccccccccccccEEEEEEEccccccEEEEEEcccccEEEEcccccEEEEccccccccccccccccccEEEEEEEccccccEEEEEEEccccccEEEEEEcccccccccccEcccccEEEEEEEcccccccccccEEEEEEccccccEEcccccccccccEcccccEEEEEEccEEEEEEcccccEEEEcccccccccEcccccEEEEEEEccEEEccccccEEEEEEcccccccccEEEEEccccccccccccccccEEEEEEccccccEEEEEEcccccccEEEEEEccccccccccccccccEEEEEEEccccccccEEEEEEEcccccEEEEEEcccccccccccEcccccEEEEEEcccccEEcccccccccccccEEEEEEcccccEEEEEccccccccccccccccEEEEEEcccccccEEEEEEccccccccEEEcccccccccEccc
Coil and Loop (DISEMBL)
MKLQTIFCSLLYLLSAVFRatadedsssrssiifttlgrsdyafdiytlpisdrpttaneikitdgesvnfnghfpspsspflSFLLRNQtliqspgpqdsrdppplqlIYVTerngtsniyYDAVYydtrrntrSRTALEQhgaevstrvqvplldlnevnggvismkdkpilsgEYLIYVSthenpgtprtswAAVYSTELKtgltrrltpygvadfspavspsgkyTAVASYgnkgwdgevEMLSTDIYIFLTRDGTQRVKIvenggwpcwvdestlfFHRKSEEDDWISVYKVIlpqtglvstesvsiqrvtppglhaftpatspgnnkFIAVAtrrptssyrhiELFDLVKNKFIeltrfvspkthhlnpfispdssrvgyhkcrggstredgnnQLLLEniksplpdislfrfdgsfpsfspkgdriafvefpgvyvvnsdgsnrrqVYFKNAFSTVWDPVREAVVYtsggpefasessevdiisinvddvdgVSAVRRLttngknnafpsvspdgkwIVFRSTRTGYKNLYIMDaeggegyglhrltegpwsdtmcnwspdgewiafasdrdnpgsgsfemylihpngtGLRKLIqsgsagranhpyfspdgksivftsdyggisaepistphqyqpygeifkikldgsdlkrltqnsfedgtpawgprfirpvdveevkneqcafedchwlnetpnqrdwgaalepekvqcgv
Flexible Loop (DISEMBL)
MKLQTIFCSLLYLLSAVFRatadedsssrssiifttlgrsdyafdIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQspgpqdsrdppPLQLIYVterngtsniyYDAVYYDTRRNTRSRTAleqhgaevstrvqvplldLNEVNGGVISMKDKPILSGEYLIYVSTHenpgtprtswAAVYSTELKTGLTRRLTPYGVAdfspavspsgkYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLhaftpatspgnnKFIAVATRRPTSSYRHIELFDLVKNKFIELTRfvspkthhlnpfispdssrvGYHKCRGgstredgnnqLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNafstvwdpVREAVVYTSGGpefasessevdiISINVDDVDGVSAVRRlttngknnafpsvspdgkwiVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTqnsfedgtpawgprFIRPVDVEEVKNEQCAFEDCHWLNETPNQRDWGAALEPEKVQCGV
Low Complexity Region (SEG)
MKLQTIFCSLLYLLSAVFRATADEDSSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHfpspsspflsfllRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFAsessevdiisinvddvdgvsAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVKNEQCAFEDCHWLNETPNQRDWGAALEPEKVQCGV
Disordered region (IsUnstruct)
***QTIFCSLLYLLSAVFRATA********SIIFTTLGRSDYAFDIYTLPISD*****************************************************LQLIYVTERNGTSNIYYDAVYYDTRRN**********GAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPA***GNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI*******GY***************LLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFA***SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD*******SFEMYLIHPNGTGLRKLIQ*********PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVKNEQCAFEDCHWLNETP******************
Disordered Region (DISOPRED)
**LQTIFCSLLYLLSAVFRA******SSRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTL***PG***SRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVKNEQCAFEDCHWLNETPNQRDW*A****E******
Disordered Region (DISEMBL)
MKLQTIFCSLLYLLSAVFRA*********SSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVKNEQCAFEDCHWLNETPNQRDWGAALEPEKVQCGV
Disordered Region (DISPRO)
MKLQTIFCSLLYLLSAVFRA******SSRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVKNEQCAFEDCHWLNETPNQRDWGAALEPEKVQCGV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLQTIFCSLLYLLSAVFRATADEDSSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVKNEQCAFEDCHWLNETPNQRDWGAALEPEKVQCGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	721	2.2.26 [Sep-21-2011]
Q28TS0	445	Protein TolB OS=Jannaschi	yes	no	0.305	0.494	0.292	9e-18
Q3A097	443	Protein TolB OS=Pelobacte	yes	no	0.352	0.573	0.273	5e-17
Q1GE19	441	Protein TolB OS=Ruegeria	yes	no	0.303	0.496	0.284	2e-16
Q39PS9	429	Protein TolB OS=Geobacter	yes	no	0.302	0.508	0.295	3e-16
Q8KEQ0	434	Protein TolB OS=Chlorobiu	yes	no	0.325	0.541	0.301	6e-16
Q3SGT4	427	Protein TolB OS=Thiobacil	yes	no	0.343	0.580	0.300	2e-15
Q74H67	432	Protein TolB OS=Geobacter	yes	no	0.300	0.502	0.278	3e-15
Q167Z6	443	Protein TolB OS=Roseobact	yes	no	0.303	0.494	0.292	4e-15
Q20X63	447	Protein TolB OS=Rhodopseu	yes	no	0.302	0.487	0.274	1e-14
A4WQ04	444	Protein TolB OS=Rhodobact	yes	no	0.306	0.497	0.290	2e-14

>sp|Q28TS0|TOLB_JANSC Protein TolB OS=Jannaschia sp. (strain CCS1) GN=tolB PE=3 SV=1

 Score = 92.8 bits (229), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 120/260 (46%), Gaps = 40/260 (15%)

Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNA----FSTVWDPVREAVVYTS 475
           P FSP+GDRI +      FP VY+++     RR +    A    FS  + P  ++VV++ 
Sbjct: 215 PRFSPQGDRILYTSYESGFPQVYIMDVATVQRRPLEAIPAETMTFSPRFSPSGQSVVFS- 273

Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
                  + S  DI S+++         R+LT        PS SPDG  IVF S R+G +
Sbjct: 274 -----LVDGSNTDIYSLDL----ATGTRRQLTQAPSIETAPSFSPDGSQIVFESDRSGNQ 324

Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
            +YIM A+GGE     R++ G        WSP G++IAF    +    G F + ++  +G
Sbjct: 325 QIYIMPADGGEA---RRVSAGTGRYGTPVWSPRGDYIAFTKQEN----GRFHIGVMRTDG 377

Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
           +  R L    S+     P ++P+G+ I+FT +  G    P            ++ + + G
Sbjct: 378 SDERLLT---SSFLDEGPTWAPNGRVIMFTRETPGDDGAP-----------AVYSVDISG 423

Query: 656 SDLKRLTQNSFEDGTPAWGP 675
            +L+R+         PAW P
Sbjct: 424 RNLQRVATPGMAS-DPAWSP 442

Involved in the TonB-independent uptake of proteins.
Jannaschia sp. (strain CCS1) (taxid: 290400)

>sp|Q3A097|TOLB_PELCD Protein TolB OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tolB PE=3 SV=1

 Score = 90.1 bits (222), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 129/304 (42%), Gaps = 50/304 (16%)

Query: 379 PDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRI 433
           P SSR+ Y   R G         DG N L L + +S + +          P FSP G  +
Sbjct: 177 PFSSRIAYIDNRTGHKELYLMDTDGANALRLTDHRSIVLN----------PDFSPNGREV 226

Query: 434 AFVEF----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDI 489
            +  +    P +Y          ++ FK   +        A  +   G E A   S    
Sbjct: 227 IYTSYRRGNPDLYRKQLSTGQEARLAFKKGLNI-------AARFRPDGREIALTQSATGN 279

Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
             + +   DG S  RRLT++   +  PS SP G  + F S R G  ++++MD  GG+   
Sbjct: 280 PELMLLGTDG-SRRRRLTSHWGIDVDPSWSPAGDRLAFVSDRQGNPHIFVMDLLGGQ--- 335

Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
             RLT     +    WSPDG+ IAF         G F++Y + P+GT  R+L  +   G 
Sbjct: 336 TARLTANGKYNATPAWSPDGKRIAFT----RLEKGVFDIYTVRPDGTDERRL--TFGPGN 389

Query: 610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG 669
             HP +SPD + +V++SD  G                 I+ ++ DG+ ++R++    +  
Sbjct: 390 KEHPRWSPDSRFLVYSSDQDGRKG--------------IYIMRADGTGIRRISAGGGQCQ 435

Query: 670 TPAW 673
            PAW
Sbjct: 436 HPAW 439

Involved in the TonB-independent uptake of proteins.

Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) (taxid: 338963)

>sp|Q1GE19|TOLB_RUEST Protein TolB OS=Ruegeria sp. (strain TM1040) GN=tolB PE=3 SV=1

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 122/260 (46%), Gaps = 41/260 (15%)

Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
           P FSP GDR+ +      FP ++V++     RR +   N   +F+  + P  + +VY+  
Sbjct: 212 PRFSPTGDRVLYTSYESGFPQIHVLDVGRVQRRVLSAGNGSMSFAPRFAPNGQTIVYSQ- 270

Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
                S+    D+ S++++  +     +RLT+       PS SPDG  IVF S R+G   
Sbjct: 271 -----SQGGNTDLFSMDINSGN----PQRLTSAPSIETAPSFSPDGSQIVFESDRSGTSQ 321

Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
           LY+M A GGE     R++ G        WSP G++IAF        +G F + ++  +G+
Sbjct: 322 LYVMSASGGEA---KRISFGQGRYGTPVWSPRGDYIAFTKQN----AGRFHIGVMRTDGS 374

Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
             R L  S        P +SP+G+ I+FT +  G S +             ++ + + G 
Sbjct: 375 EERLLTAS---FLDEGPTWSPNGRVIMFTRETQGASGQ-----------ARLYSVDISGR 420

Query: 657 DLKRL-TQNSFEDGTPAWGP 675
           +LK + T +   D  P+W P
Sbjct: 421 NLKPVKTPDGASD--PSWSP 438

Involved in the TonB-independent uptake of proteins.

Silicibacter sp. (strain TM1040) (taxid: 292414)

>sp|Q39PS9|TOLB_GEOMG Protein TolB OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=tolB PE=3 SV=1

 Score = 87.4 bits (215), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 116/261 (44%), Gaps = 43/261 (16%)

Query: 424 PSFSPKGDRIAFVEF----PGVYVVNS-DGSNRRQVYFKNAFST-VWDPVREAVVYTSGG 477
           P FSP G  I F  +    P ++      G+  R   ++   +T  W P  + +  T   
Sbjct: 205 PDFSPSGKEIIFTSYRQGNPDLFRRELFTGAEARISSYRGINATGAWSPDGKTIALT--- 261

Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
               S+    +I +I+ D  +      RLT        P+ SPD + IVF S R G   +
Sbjct: 262 ---LSKDGNSEIYTISRDGKN----PHRLTNTSAIEVSPAWSPDVRKIVFVSDRLGKPQI 314

Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
           +IM+A+G    G+ RLT     +    WSP G+ I ++        G F++Y I+P+GT 
Sbjct: 315 FIMNADG---TGVRRLTTSGNYNVSPRWSPKGDRIVYSRQ-----EGGFQIYAINPDGTN 366

Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGE-IFKIKLDGS 656
             +L   GS     HP +SPDG+ I F+S  GG               GE I+ ++ DGS
Sbjct: 367 DTRLTSEGSN---EHPRWSPDGRFITFSSTRGG---------------GEGIYVMRADGS 408

Query: 657 DLKRLTQNSFEDGTPAWGPRF 677
              R++     D  P W PR+
Sbjct: 409 GQTRVSGGKGRDSHPTWSPRW 429

Involved in the TonB-independent uptake of proteins.

Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799)

>sp|Q8KEQ0|TOLB_CHLTE Protein TolB OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=tolB PE=3 SV=1

 Score = 86.7 bits (213), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 127/282 (45%), Gaps = 47/282 (16%)

Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVN-SDGSNR 451
           DG N + L N +S    ISL       P+ SP G  IA+ ++    P +Y+ N + G+  
Sbjct: 191 DGENVVQLTNSRS----ISLT------PAVSPDGTYIAWTDYTSGKPNLYIKNIATGAKV 240

Query: 452 RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK 511
                    S  W P    +V T       S   + D+  I  D     +  RRLT  G 
Sbjct: 241 SVNKHGVCISPAWRPGTNTLVTT------LSYEGDQDLYLIRADG----TVERRLTKGGG 290

Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW 571
            +  P+ SPDG  + F STR G   ++I D   G+   + RLT     +T  +WSP+G+ 
Sbjct: 291 IDVSPTFSPDGSKMAFVSTRQGGPQIFIQDMNSGQ---VRRLTYSGIYNTQPSWSPNGDK 347

Query: 572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGI 631
           I ++S +    SG   ++ I+ +G+GL +L  SGS G   HP +SPDG  IVF+S   G 
Sbjct: 348 ILYSSMQK---SGEINIFSINVDGSGLLQLT-SGS-GNNEHPSWSPDGSMIVFSSTRDGR 402

Query: 632 SAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW 673
                           ++ +  DGS+ + L     E   P+W
Sbjct: 403 R--------------RLYVMNADGSNQRPLLNMQGEQQQPSW 430

Involved in the TonB-independent uptake of proteins.

Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) (taxid: 194439)

>sp|Q3SGT4|TOLB_THIDA Protein TolB OS=Thiobacillus denitrificans (strain ATCC 25259) GN=tolB PE=3 SV=1

 Score = 84.7 bits (208), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 137/309 (44%), Gaps = 61/309 (19%)

Query: 381 SSRVGYHKCRGGS-----TREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAF 435
           SSR+ Y + +G          DG N   +  ++S  P IS        P FSP G R+A+
Sbjct: 166 SSRIAYVQKQGKRYELRVADADGQNPRTI--VRSLEPLIS--------PMFSPDGTRLAY 215

Query: 436 VEF----PGVYVVNSDGSNRRQVY-FKNAFST-VWDP--VREAVVYTSGGPEFASESSEV 487
           V F    P VYV +     RR+V  FK + S   W P   + AVV T  G          
Sbjct: 216 VSFEDKKPVVYVQSLQQGGRRKVAAFKGSNSAPAWSPDGRQLAVVLTRDGAS-------- 267

Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
            I  INVD     S + RL  +G  +  P  SPDG+ + F S R G   +Y +   GG+ 
Sbjct: 268 QIYLINVDG----SGLTRLMRSGDIDTEPVFSPDGQTLYFTSDRGGSPQIYRVAKSGGDA 323

Query: 548 YGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
               R++ EG + +     SPDG ++A+ S RD    G F + L        R L ++  
Sbjct: 324 ---KRVSFEGSY-NVSPTISPDGRYLAYIS-RDG---GRFRVVLQELASGQTRVLTET-- 373

Query: 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSF 666
             R   P F+P+G+++++ +  GG               G +  + LDG    RL+++  
Sbjct: 374 -TRDEAPSFAPNGQAVLYATVQGG--------------RGVLGTVTLDGKTRARLSESGV 418

Query: 667 EDGTPAWGP 675
           +   PAWGP
Sbjct: 419 DAREPAWGP 427

Involved in the TonB-independent uptake of proteins.

Thiobacillus denitrificans (strain ATCC 25259) (taxid: 292415)

>sp|Q74H67|TOLB_GEOSL Protein TolB OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=tolB PE=3 SV=1

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 118/262 (45%), Gaps = 45/262 (17%)

Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVYF-KNAFSTVWDPVREAVVYTSGGP 478
           P FSP G  +A+  +    P ++        RR+++    A  +    +     ++  G 
Sbjct: 208 PDFSPNGRELAYTSYRRGNPDLF--------RREIFTGTEAVVSSHRGINVTGTWSPDGK 259

Query: 479 EFA---SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
           + A   S     +I +I+ D  D     RRLTT+   +  P+ SPDGK I F S R G  
Sbjct: 260 QLALAMSRDGNSEIYAISRDGRD----PRRLTTHQAIDVSPAWSPDGKRIAFVSDRLGKP 315

Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
            ++IM+A+G +   + RLT     +    WSP G+ + +         G F++Y I  +G
Sbjct: 316 QVFIMNADGSD---VRRLTTSGAYNVSPRWSPKGDRLVYCRQ-----EGGFQIYSIATDG 367

Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG 655
           TG  +L   GS     HP +SPDG+ + F+S   G  A              I+ ++ DG
Sbjct: 368 TGDTRLTSEGS---NEHPRWSPDGRFLTFSSTRDGGEA--------------IYVMRSDG 410

Query: 656 SDLKRLTQNSFEDGTPAWGPRF 677
           S   R+ ++  +   P W PR+
Sbjct: 411 SGQTRVYRSKGKASHPTWSPRW 432

Involved in the TonB-independent uptake of proteins.

Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231)

>sp|Q167Z6|TOLB_ROSDO Protein TolB OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=tolB PE=3 SV=1

 Score = 84.0 bits (206), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 122/260 (46%), Gaps = 41/260 (15%)

Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
           P FSP G RI +      FP +YV++     RR +  +    +F+  + P  + +V++  
Sbjct: 214 PRFSPDGQRILYTSYETGFPRIYVLDVTSLQRRGLESQEGTMSFAPRFAPDGQTIVFS-- 271

Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
                S+    DI  +NV+   G SA R LT+       PS SPDG  IVF S R+G + 
Sbjct: 272 ----LSQGGNTDIYRMNVN---GGSATR-LTSAPSIETAPSYSPDGTQIVFESDRSGSQQ 323

Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
           LY+M A GGE     R++ GP       WSP G+ +AF        +G F + ++  +G+
Sbjct: 324 LYVMPANGGEA---RRISFGPGRYGTPVWSPRGDLVAFTKQN----AGRFHIGVMRLDGS 376

Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
             R L  S        P +SP+G+ I+F+ +  G            Q    ++ + + G 
Sbjct: 377 EERLLTAS---FLDEGPTWSPNGRVIMFSRETQGA-----------QGRATLYSVDITGR 422

Query: 657 DLKRLTQNSFEDGT-PAWGP 675
           +L+ +   + E G+ P+W P
Sbjct: 423 NLRPV--RTPEGGSDPSWSP 440

Involved in the TonB-independent uptake of proteins.

Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (taxid: 375451)

>sp|Q20X63|TOLB_RHOPB Protein TolB OS=Rhodopseudomonas palustris (strain BisB18) GN=tolB PE=3 SV=2

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 116/259 (44%), Gaps = 41/259 (15%)

Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGG 477
           P FSP    I ++EF    P VY+ N +   R  V  +   +FS  + P  + V+ +   
Sbjct: 220 PRFSPSTQEITYMEFGQGDPRVYLFNIETGQREIVGNFPGMSFSPRFSPDGQRVIMS--- 276

Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
                +    ++  +++       +  RLT     +  PS +PDG  I F S R G   +
Sbjct: 277 ---LQQGGNSNLFVMDLRS----KSTTRLTDTPAIDTSPSYAPDGSKICFESDRGGKPQI 329

Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
           Y+M A GG   G  R++ G  S +   WSP G++IAF       G G F + ++ P+G+G
Sbjct: 330 YVMPAGGG---GAQRISFGEGSYSTPVWSPRGDYIAFTKQ----GGGQFSIGIMKPDGSG 382

Query: 598 LRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
            R L    ++G  N  P F+P+G+ ++F  D GG                 +F + + G 
Sbjct: 383 ERLL----TSGYHNEGPTFAPNGRVLMFFRDPGGNGGP------------SLFTVDISGR 426

Query: 657 DLKRLTQNSFEDGTPAWGP 675
           + +++    F    PAW P
Sbjct: 427 NEQKVPTPGFAS-DPAWSP 444

Involved in the TonB-independent uptake of proteins.

Rhodopseudomonas palustris (strain BisB18) (taxid: 316056)

>sp|A4WQ04|TOLB_RHOS5 Protein TolB OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=tolB PE=3 SV=1

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 111/258 (43%), Gaps = 37/258 (14%)

Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
           P FSP GDRI F  +       S G  R  +Y  +  S     + E     +  P FA +
Sbjct: 215 PRFSPTGDRILFTSY-------STGFPR--IYLMDVGSLATRSLAEQPGTMTFAPRFAPD 265

Query: 484 SSEVDII-----SINVDDVDGVSAVRRLTTNGKN-NAFPSVSPDGKWIVFRSTRTGYKNL 537
              V        + ++  +D  S  RR  TN  +    PS SPDG  IVF S R+G + L
Sbjct: 266 GRTVAFSLEQGGNTDIYTLDTASGTRRQLTNSPSIETAPSYSPDGSQIVFESDRSGGQQL 325

Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
           YIM A GGE     R++ G        WSP G+ IAF         G F + ++  +G+ 
Sbjct: 326 YIMPAGGGE---PRRISNGAGRYGTPVWSPRGDLIAFTKQHQ----GRFHIGVMRTDGSE 378

Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
            R L  S        P ++P+G+ ++FT +  G   +P            ++ + + G +
Sbjct: 379 ERLLTAS---FLDEGPTWAPNGRVLMFTREGAGAGGQP-----------ALYSVDISGRN 424

Query: 658 LKRLTQNSFEDGTPAWGP 675
           LK++   S     PAW P
Sbjct: 425 LKKVPL-SVPASDPAWSP 441

Involved in the TonB-independent uptake of proteins.

Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) (taxid: 349102)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	721
255558602	708	conserved hypothetical protein [Ricinus	0.962	0.980	0.691	0.0
297845142	706	hypothetical protein ARALYDRAFT_472406 [	0.962	0.983	0.668	0.0
18395019	706	DPP6 N-terminal domain-like protein [Ara	0.957	0.977	0.655	0.0
225459635	680	PREDICTED: uncharacterized protein LOC10	0.932	0.988	0.684	0.0
147797552	715	hypothetical protein VITISV_037210 [Viti	0.972	0.980	0.668	0.0
359492398	715	PREDICTED: uncharacterized protein LOC10	0.972	0.980	0.668	0.0
357520365	684	Protein tolB [Medicago truncatula] gi|35	0.891	0.940	0.661	0.0
356518561	723	PREDICTED: uncharacterized protein LOC10	0.915	0.912	0.628	0.0
449499097	703	PREDICTED: protein TolB-like [Cucumis sa	0.907	0.930	0.627	0.0
449463434	703	PREDICTED: protein TolB-like [Cucumis sa	0.907	0.930	0.627	0.0

>gi|255558602|ref|XP_002520326.1| conserved hypothetical protein [Ricinus communis] gi|223540545|gb|EEF42112.1| conserved hypothetical protein [Ricinus communis]

 Score =  997 bits (2578), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/714 (69%), Positives = 572/714 (80%), Gaps = 20/714 (2%)

Query: 10  LLYLLSAVFRATADEDSSS--RSSIIFTTLG-RSDYAFDIYTLPISDRPTTANEIKITDG 66
            L+LL  +  A+AD  SSS  R+SIIF TLG RS  AFDI+ LP +  P ++NEI+ITDG
Sbjct: 9   FLFLLVDISSASADHGSSSSGRTSIIFATLGSRSSNAFDIFALPTTTPPDSSNEIQITDG 68

Query: 67  ESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAV 126
           +S++FNGHFPSP+S  L  L  NQTLI S   Q+S     + +IYVTER G+S IY D +
Sbjct: 69  KSLSFNGHFPSPTS--LVSLFPNQTLIHSSAHQNSAS---ITVIYVTERGGSSTIYLDVL 123

Query: 127 YYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHE 186
            YDT R+ RSR+AL     E   RVQ+PLL  N V    +S KDKP ++G YL+Y+STHE
Sbjct: 124 SYDTARSARSRSAL-----ETPPRVQIPLLKGNNVG---VSFKDKPTINGNYLVYLSTHE 175

Query: 187 NPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEM 246
           + G PR SWAAVYSTEL TGLTRRLTPYGVADFSPAVSPSG YTAVASYG  GW GEVE+
Sbjct: 176 DAGKPRASWAAVYSTELNTGLTRRLTPYGVADFSPAVSPSGVYTAVASYGEAGWKGEVEL 235

Query: 247 LSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVS 306
           LSTDIYIFLTR+GT+RVKI+ENGGWP WVD+STL+FHR SE+D WISVY+  LP    +S
Sbjct: 236 LSTDIYIFLTRNGTRRVKIIENGGWPSWVDDSTLYFHRSSEKDGWISVYRATLPSHTSLS 295

Query: 307 TESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFV 366
           T+SV I+RVTPPG+HAFTPATSPGN KFIAVATRRP S YRHIELFDL KN+F+ELTR V
Sbjct: 296 TDSVIIERVTPPGVHAFTPATSPGNKKFIAVATRRPNSDYRHIELFDLAKNEFVELTRLV 355

Query: 367 SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSF 426
           SP+THH NPFISPD++RVGYH+CRG S  +  + Q +LENIKSP+ +ISLFR DGSFPS+
Sbjct: 356 SPQTHHYNPFISPDAARVGYHRCRGASNDKKSSTQFMLENIKSPVAEISLFRIDGSFPSW 415

Query: 427 SPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSE 486
           SP GDRIAFVEFPGVYVVN DG++RRQVY  NAF T WDPVR  VVY+S GPEFASES+E
Sbjct: 416 SPGGDRIAFVEFPGVYVVNRDGTDRRQVYPGNAFGTTWDPVRPGVVYSSAGPEFASESTE 475

Query: 487 VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546
           VDIISINVD    V + ++LTTNGKNNAFP+VSPDGKWIVFRS R+GYKNLYIMDA  GE
Sbjct: 476 VDIISINVDQ---VGSFKKLTTNGKNNAFPAVSPDGKWIVFRSGRSGYKNLYIMDAVEGE 532

Query: 547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS 606
             GL+RLTEGPW DTMC+WS DGEWIAFASDR+NPGS SFE++LIHPNGTGL++L++SG 
Sbjct: 533 KGGLYRLTEGPWGDTMCSWSIDGEWIAFASDRENPGSASFELFLIHPNGTGLKRLVKSGL 592

Query: 607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSF 666
            GR NHPYFSPDGKSIVFT+DYGGISAEPIS PH +QPYGEI+ +KLDGSDLKRLT NSF
Sbjct: 593 GGRTNHPYFSPDGKSIVFTTDYGGISAEPISNPHHFQPYGEIYTVKLDGSDLKRLTHNSF 652

Query: 667 EDGTPAWGPRFIRPVDVEEVK-NEQCAFEDCHWLNETPNQRDWGAALEPEKVQC 719
           EDGTPAWGP +I PVD+E  K   QC+F+DCHWL+E P        LE    QC
Sbjct: 653 EDGTPAWGPAYIEPVDLEWPKYGPQCSFDDCHWLSEIPKHSVGFKLLESRNPQC 706

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845142|ref|XP_002890452.1| hypothetical protein ARALYDRAFT_472406 [Arabidopsis lyrata subsp. lyrata] gi|297336294|gb|EFH66711.1| hypothetical protein ARALYDRAFT_472406 [Arabidopsis lyrata subsp. lyrata]

 Score =  958 bits (2476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/719 (66%), Positives = 561/719 (78%), Gaps = 25/719 (3%)

Query: 6   IFCSLLYLLSAVFRATADEDSSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITD 65
            F SLL  L A      + ++    +IIFTTLGRS Y FDI+TL  +  P+ +NE++ITD
Sbjct: 8   FFASLLLPLHATTLEHQNSNAGDGDTIIFTTLGRSRYEFDIFTLSTTHPPSDSNELRITD 67

Query: 66  GESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDA 125
           GESVNFNG+FPSP+ P L  LL ++TLIQ        D  PL LIYVTERNGTS+IYYD 
Sbjct: 68  GESVNFNGYFPSPT-PALISLLPDETLIQM------EDSSPLHLIYVTERNGTSSIYYDL 120

Query: 126 VYY-DTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNGG--VISMKDKPILSGEYLIYV 182
           +Y  D+    + R+ LE       +RVQVPLL   +   G  V S KDKP LSGE+L+YV
Sbjct: 121 IYGGDSDSKMKRRSVLE-----APSRVQVPLLSGFDHQSGMTVNSFKDKPSLSGEFLVYV 175

Query: 183 STHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDG 242
           STHEN G PRTSW AVYSTELKTGLTRRLTP GVADFSPAVSPSG  TAVASYG +GW G
Sbjct: 176 STHENSGEPRTSWTAVYSTELKTGLTRRLTPSGVADFSPAVSPSGNLTAVASYGERGWTG 235

Query: 243 EVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQT 302
           EVE LSTDIY+F TRDGT RVK+VE+GGWPCWVDE+TL+FHR+SEED WISVY+ ILP+ 
Sbjct: 236 EVEELSTDIYVFSTRDGTHRVKVVEHGGWPCWVDETTLYFHRRSEEDGWISVYRAILPEN 295

Query: 303 GLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIEL 362
           G ++TESV+IQRVTPPG+HAFTPATSP N++FIAVATRRP S YRH+ELFDL +N+FIEL
Sbjct: 296 GPLTTESVTIQRVTPPGVHAFTPATSPNNHEFIAVATRRPGSDYRHVELFDLKRNEFIEL 355

Query: 363 TRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGS 422
           TR V+PK++HLNPF+SPDSSRVGYH CRG +     +  L LENI++   D+SLFR DGS
Sbjct: 356 TRLVAPKSYHLNPFLSPDSSRVGYHSCRGEANGRR-SPLLFLENIQTTTTDLSLFRIDGS 414

Query: 423 FPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFAS 482
           FPSFSP GDRIA+V+ PGV+VV  DGS +R+VY   AFST WDPVR  VVY+S GP FA+
Sbjct: 415 FPSFSPGGDRIAYVKMPGVFVVKPDGSGQREVYNGMAFSTAWDPVRPGVVYSSSGPTFAT 474

Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
           E +EVD+ISI VD  D  S+VRRLTTNGKNNAFP  SPDGK IVFRS RTG+KNLYIMDA
Sbjct: 475 ERTEVDVISIEVDAADKSSSVRRLTTNGKNNAFPWPSPDGKRIVFRSGRTGHKNLYIMDA 534

Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
           E GE  GL RLTEG W+DTMCNWSPDGEWIAFASDR++PGSGSFE++LIHPNGTGLRKLI
Sbjct: 535 EKGESGGLWRLTEGAWTDTMCNWSPDGEWIAFASDRESPGSGSFELFLIHPNGTGLRKLI 594

Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
           QSG+ GR NHP FSPD KS+VFTSDY GISAEPIS PH YQPYG+IF +KLDGS+L+RLT
Sbjct: 595 QSGTGGRTNHPIFSPDSKSLVFTSDYAGISAEPISNPHHYQPYGDIFTVKLDGSNLRRLT 654

Query: 663 QNSFEDGTPAWGPRFIRPVDV--EEVKNEQCAFEDCHWLNETPNQRDWGAALEPEKVQC 719
            NS+EDGTPAW PRFI P +V  +   N +C+FEDCHWLN+ P        L+  K+ C
Sbjct: 655 HNSYEDGTPAWAPRFIHPNNVVLQRRNNSRCSFEDCHWLNKYP-------TLKGRKISC 706

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395019|ref|NP_564147.1| DPP6 N-terminal domain-like protein [Arabidopsis thaliana] gi|5263319|gb|AAD41421.1|AC007727_10 ESTs gb|N96028, gb|F14286, gb|T20680, gb|F14443, gb|AA657300 and gb|N65244 come from this gene [Arabidopsis thaliana] gi|15028243|gb|AAK76710.1| unknown protein [Arabidopsis thaliana] gi|23297034|gb|AAN13226.1| unknown protein [Arabidopsis thaliana] gi|332192017|gb|AEE30138.1| DPP6 N-terminal domain-like protein [Arabidopsis thaliana]

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/723 (65%), Positives = 563/723 (77%), Gaps = 33/723 (4%)

Query: 6   IFCSLLYLLSAVFRATADEDSSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITD 65
            F SLL  L        + ++    +IIFTTLGRS Y FDI+ L  +  P+ + E++ITD
Sbjct: 8   FFASLLLRLHLSTAEHQNSNAGDGDTIIFTTLGRSHYEFDIFALSTTQPPSVSGELRITD 67

Query: 66  GESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDA 125
           GESVNFNG+FPSPS   LS LL ++TLIQ        D  PL LIYVTERNGTS++YYD 
Sbjct: 68  GESVNFNGYFPSPSPALLS-LLPDETLIQM------EDSSPLHLIYVTERNGTSSLYYDL 120

Query: 126 VYY-DTRRNTRSRTALEQHGAEVSTRVQVPLLD-LNEVNGGVI-SMKDKPILSGEYLIYV 182
           VY  ++   T+ R+ LE       +RVQVPLL   + ++G  + S KDKP LSGE+++YV
Sbjct: 121 VYGGNSDFKTKRRSVLE-----APSRVQVPLLSRFDHLSGMTVNSFKDKPSLSGEFIVYV 175

Query: 183 STHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDG 242
           STHE+ G PR SW AVYSTELKTGLTRRLTP GVADFSPAVSPSG  TAVASYG +GW G
Sbjct: 176 STHESSGEPRASWTAVYSTELKTGLTRRLTPSGVADFSPAVSPSGNLTAVASYGERGWTG 235

Query: 243 EVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQT 302
           EVE L TDIY+FLTRDG+ RVK+VE+GGWPCWVDESTL+FHR+SEED WISVY+ ILP+ 
Sbjct: 236 EVEELRTDIYVFLTRDGSHRVKVVEHGGWPCWVDESTLYFHRRSEEDGWISVYRAILPEN 295

Query: 303 GLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIEL 362
           G ++TESV+IQRVTPPG+HAFTPATSP N++F+AVATRRP S YRH+ELFDL +N+FIEL
Sbjct: 296 GPLTTESVTIQRVTPPGVHAFTPATSPNNHEFVAVATRRPGSDYRHVELFDLKRNEFIEL 355

Query: 363 TRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQ----LLLENIKSPLPDISLFR 418
           TR V+PK+HHLNPF+SPDSSRVGYH CRG     D N +    L LENI++   D+SLFR
Sbjct: 356 TRLVAPKSHHLNPFLSPDSSRVGYHSCRG-----DANGRRSPLLFLENIQTTTRDLSLFR 410

Query: 419 FDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP 478
            DGSFPSFSP GDRIA+V+ PGV+VV  DGS +R+VY   AFST WDPVR  +VY+S GP
Sbjct: 411 IDGSFPSFSPGGDRIAYVKMPGVFVVKPDGSGQREVYKGMAFSTAWDPVRPGIVYSSSGP 470

Query: 479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY 538
            FA+E +EVD+ISI+VD  D  S+VRRLTTNGKNNAFP  SPDGK IVFRS RTG+KNLY
Sbjct: 471 TFATERTEVDVISIDVDAADKSSSVRRLTTNGKNNAFPWPSPDGKRIVFRSGRTGHKNLY 530

Query: 539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL 598
           IMDAE GE  GL RLTEG W+DTMCNWSPDGEWIAFASDR++PGSGSFE++LIHPNGTGL
Sbjct: 531 IMDAEKGESGGLWRLTEGAWTDTMCNWSPDGEWIAFASDRESPGSGSFELFLIHPNGTGL 590

Query: 599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL 658
           RKLIQSG+ GR NHP FSPD KS+VFTSDY GISAEPIS PH YQPYG+IF +KLDGS++
Sbjct: 591 RKLIQSGTGGRTNHPIFSPDSKSLVFTSDYAGISAEPISNPHHYQPYGDIFTVKLDGSNV 650

Query: 659 KRLTQNSFEDGTPAWGPRFIRP--VDVEEVKNEQCAFEDCHWLNETPNQRDWGAALEPEK 716
           +RLT NS+EDGTPAW PRFI P  V+++   + +C+FEDCHWLN+ P        L+  K
Sbjct: 651 RRLTHNSYEDGTPAWAPRFIHPNNVELQRRNDSRCSFEDCHWLNKYP-------TLKGRK 703

Query: 717 VQC 719
           + C
Sbjct: 704 ISC 706

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459635|ref|XP_002285877.1| PREDICTED: uncharacterized protein LOC100267814 isoform 2 [Vitis vinifera]

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/694 (68%), Positives = 551/694 (79%), Gaps = 22/694 (3%)

Query: 30  SSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRN 89
           +SIIFTTLGRSDYAFD+++LP     T A+E++ITDG+SVNFNGHFPS  SP +S LL N
Sbjct: 5   TSIIFTTLGRSDYAFDVFSLPTLGPSTIADELRITDGQSVNFNGHFPS--SPIIS-LLAN 61

Query: 90  QTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVST 149
           QTL++S   +  R    LQ IYVTERNG+SNIY D +YYDT  N+R R+ALE      + 
Sbjct: 62  QTLVESSSVK--RPDESLQTIYVTERNGSSNIYLDIIYYDTPTNSRRRSALE-----TAV 114

Query: 150 RVQVPLLDLN-EVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT 208
           RV+VPLL  N E + G ISMKD+P L GE L+YVSTHE+ G PR SWAAVYST L TG T
Sbjct: 115 RVEVPLLGTNTEQSDGRISMKDRPSLVGEDLVYVSTHEDSGVPRKSWAAVYSTHLPTGST 174

Query: 209 RRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVEN 268
           RRLTPYGVAD+SPAVSPSG +TAVASYG +GW GEVE LSTDIY+F TRDG++R K+VE+
Sbjct: 175 RRLTPYGVADYSPAVSPSGVWTAVASYGERGWGGEVEELSTDIYVFRTRDGSERTKVVEH 234

Query: 269 GGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATS 328
           GGWPCWVD+STLFFHR+   D W S+Y+ IL       TESV I+RVTPPGLHAFTPATS
Sbjct: 235 GGWPCWVDDSTLFFHRRGS-DGWWSIYRAIL-------TESVVIERVTPPGLHAFTPATS 286

Query: 329 PGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHK 388
           PGN  FIAVATRR  S YRHIELFDL+ N+F ELTR +SP+THH NPFISPDS+R+GYH+
Sbjct: 287 PGNKNFIAVATRRLNSDYRHIELFDLLSNEFRELTRRISPQTHHFNPFISPDSTRIGYHR 346

Query: 389 CRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDG 448
           CRG S     +  LLLEN+KSPLP+ISLFRFDGSFPSFSP GDRIA+VEFPGVYVVN DG
Sbjct: 347 CRGDSNGGK-SPHLLLENLKSPLPEISLFRFDGSFPSFSPGGDRIAYVEFPGVYVVNRDG 405

Query: 449 SNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508
           S RR+V+   AFST WD  R+ VVYTS GP FA+ES++VDI+SINVDDVD  S  ++LTT
Sbjct: 406 SGRREVFSGIAFSTAWDHKRKGVVYTSAGPTFATESTKVDIVSINVDDVDQPS-YKKLTT 464

Query: 509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
            G+NNAFPS SPDGKWI FRS R+GYKNLYIMDA  GE  G+HRLTEGPW+DTMCNWSPD
Sbjct: 465 GGENNAFPSPSPDGKWIAFRSGRSGYKNLYIMDAVDGERGGIHRLTEGPWTDTMCNWSPD 524

Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
           G+WI FASDR+NPG G FE+Y+IHPNGTGLRK++ SGSAGR NHP+FSPDGKSIVFTSDY
Sbjct: 525 GDWIVFASDRENPGGGGFELYVIHPNGTGLRKVVHSGSAGRTNHPWFSPDGKSIVFTSDY 584

Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVE-EVK 687
             +SAEPIS  H YQPYG+IF + LDGS L RLT NS+EDGTPAW P+ IRPVDV+ +V 
Sbjct: 585 AAVSAEPISNAHHYQPYGDIFVVNLDGSGLHRLTHNSYEDGTPAWAPKVIRPVDVKLQVD 644

Query: 688 NEQCAFEDCHWLNETPNQRDWGAALEPEKVQCGV 721
              C+FEDCHWL+ TPN     A     K QCG+
Sbjct: 645 GPHCSFEDCHWLSNTPNHGVEAAPWVLAKPQCGL 678

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147797552|emb|CAN73514.1| hypothetical protein VITISV_037210 [Vitis vinifera]

 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/725 (66%), Positives = 565/725 (77%), Gaps = 24/725 (3%)

Query: 1   MKLQTIFCSLLYLLSAVFRATADEDS--SSRSSIIFTTLGRSDYAFDIYTLPISDRPTTA 58
           M   T+    L L+  +F A AD D   +S +SIIFTTLGRSDYAFD+++LP     T A
Sbjct: 9   MNRITLLXFFLSLVITLFSAAADHDGPTTSTTSIIFTTLGRSDYAFDVFSLPTLGPSTIA 68

Query: 59  NEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGT 118
           +E++ITDG+SVNFNGHFPS  SP +S LL NQTL++S   +  R    LQ IYVTERNG+
Sbjct: 69  DELRITDGQSVNFNGHFPS--SPIIS-LLANQTLLESSSVK--RPDESLQTIYVTERNGS 123

Query: 119 SNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLN-EVNGGVISMKDKPILSGE 177
           SNIY D +YYDT  N+R R+ALE      + RV+VPLL  N E + G ISMKD+P L GE
Sbjct: 124 SNIYLDIIYYDTPTNSRRRSALE-----TAVRVEVPLLGTNTEQSDGRISMKDRPSLVGE 178

Query: 178 YLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGN 237
            L+YVSTHE+ G PR SWAAVYST L TG TRRLTPYGVAD+SPAVSPSG +TAVASYG 
Sbjct: 179 XLVYVSTHEDSGVPRKSWAAVYSTHLPTGSTRRLTPYGVADYSPAVSPSGVWTAVASYGE 238

Query: 238 KGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKV 297
           +GW GEVE LSTDIY+F TRDG++R K+VE+GGWPCWVD+STLFFHR+   D W S+Y+ 
Sbjct: 239 RGWGGEVEELSTDIYVFRTRDGSERTKVVEHGGWPCWVDDSTLFFHRRGS-DGWWSIYRA 297

Query: 298 ILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKN 357
           IL       TESV I+RVTPPGLHAFTPATSPGN  FIAVATRR  S YRHIELFDL+ N
Sbjct: 298 IL-------TESVVIERVTPPGLHAFTPATSPGNKNFIAVATRRLNSDYRHIELFDLLSN 350

Query: 358 KFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF 417
           +F ELTR +SP+THH NPFISPDS+R+GYH+CRG S     +  LLLEN+KSPLP+ISLF
Sbjct: 351 EFRELTRRISPQTHHFNPFISPDSTRIGYHRCRGDSNGGK-SPHLLLENLKSPLPEISLF 409

Query: 418 RFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGG 477
           RFDGSFPSFSP GDRIA+VEFPGVYVVN DGS RR+V+   AFST WD  R+ VVYTS G
Sbjct: 410 RFDGSFPSFSPGGDRIAYVEFPGVYVVNRDGSGRREVFSGIAFSTAWDHKRKGVVYTSAG 469

Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
           P FA+ES++VDI+SINVDDVD  S  ++LTT G+NNAFPS SPDGKWI FRS R+GYKNL
Sbjct: 470 PTFATESTKVDIVSINVDDVDQPS-YKKLTTGGENNAFPSPSPDGKWIAFRSGRSGYKNL 528

Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
           YIMDA  GE  G+HRLTEGPW+DTMCNWSPDG+WI FASDR+NPG G FE+Y+IHPNGTG
Sbjct: 529 YIMDAVXGERGGIHRLTEGPWTDTMCNWSPDGDWIVFASDRENPGGGGFELYVIHPNGTG 588

Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
           LRK++ SGSAGR NHP+FSPDGKSIVFTSDY  +SAEPIS  H YQPYG+IF + LDGS 
Sbjct: 589 LRKVVHSGSAGRTNHPWFSPDGKSIVFTSDYAAVSAEPISNAHHYQPYGDIFVVNLDGSG 648

Query: 658 LKRLTQNSFEDGTPAWGPRFIRPVDVE-EVKNEQCAFEDCHWLNETPNQRDWGAALEPEK 716
           L RLT NS+EDGTPAW P+ IRPVDV+ +V    C+FEDCHWL+ TPN     A     K
Sbjct: 649 LHRLTHNSYEDGTPAWAPKVIRPVDVKLQVDGPHCSFEDCHWLSNTPNHGVEAAPWVLAK 708

Query: 717 VQCGV 721
            QCG+
Sbjct: 709 PQCGL 713

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492398|ref|XP_002285876.2| PREDICTED: uncharacterized protein LOC100267814 isoform 1 [Vitis vinifera]

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/725 (66%), Positives = 565/725 (77%), Gaps = 24/725 (3%)

Query: 1   MKLQTIFCSLLYLLSAVFRATADEDS--SSRSSIIFTTLGRSDYAFDIYTLPISDRPTTA 58
           M   T+    L L+  +F A AD D   +S +SIIFTTLGRSDYAFD+++LP     T A
Sbjct: 9   MNRITLLFFFLSLVITLFSAAADHDGPTTSTTSIIFTTLGRSDYAFDVFSLPTLGPSTIA 68

Query: 59  NEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGT 118
           +E++ITDG+SVNFNGHFPS  SP +S LL NQTL++S   +  R    LQ IYVTERNG+
Sbjct: 69  DELRITDGQSVNFNGHFPS--SPIIS-LLANQTLVESSSVK--RPDESLQTIYVTERNGS 123

Query: 119 SNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLN-EVNGGVISMKDKPILSGE 177
           SNIY D +YYDT  N+R R+ALE      + RV+VPLL  N E + G ISMKD+P L GE
Sbjct: 124 SNIYLDIIYYDTPTNSRRRSALE-----TAVRVEVPLLGTNTEQSDGRISMKDRPSLVGE 178

Query: 178 YLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGN 237
            L+YVSTHE+ G PR SWAAVYST L TG TRRLTPYGVAD+SPAVSPSG +TAVASYG 
Sbjct: 179 DLVYVSTHEDSGVPRKSWAAVYSTHLPTGSTRRLTPYGVADYSPAVSPSGVWTAVASYGE 238

Query: 238 KGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKV 297
           +GW GEVE LSTDIY+F TRDG++R K+VE+GGWPCWVD+STLFFHR+   D W S+Y+ 
Sbjct: 239 RGWGGEVEELSTDIYVFRTRDGSERTKVVEHGGWPCWVDDSTLFFHRRGS-DGWWSIYRA 297

Query: 298 ILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKN 357
           IL       TESV I+RVTPPGLHAFTPATSPGN  FIAVATRR  S YRHIELFDL+ N
Sbjct: 298 IL-------TESVVIERVTPPGLHAFTPATSPGNKNFIAVATRRLNSDYRHIELFDLLSN 350

Query: 358 KFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF 417
           +F ELTR +SP+THH NPFISPDS+R+GYH+CRG S     +  LLLEN+KSPLP+ISLF
Sbjct: 351 EFRELTRRISPQTHHFNPFISPDSTRIGYHRCRGDSNGGK-SPHLLLENLKSPLPEISLF 409

Query: 418 RFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGG 477
           RFDGSFPSFSP GDRIA+VEFPGVYVVN DGS RR+V+   AFST WD  R+ VVYTS G
Sbjct: 410 RFDGSFPSFSPGGDRIAYVEFPGVYVVNRDGSGRREVFSGIAFSTAWDHKRKGVVYTSAG 469

Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
           P FA+ES++VDI+SINVDDVD  S  ++LTT G+NNAFPS SPDGKWI FRS R+GYKNL
Sbjct: 470 PTFATESTKVDIVSINVDDVDQPS-YKKLTTGGENNAFPSPSPDGKWIAFRSGRSGYKNL 528

Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG 597
           YIMDA  GE  G+HRLTEGPW+DTMCNWSPDG+WI FASDR+NPG G FE+Y+IHPNGTG
Sbjct: 529 YIMDAVDGERGGIHRLTEGPWTDTMCNWSPDGDWIVFASDRENPGGGGFELYVIHPNGTG 588

Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
           LRK++ SGSAGR NHP+FSPDGKSIVFTSDY  +SAEPIS  H YQPYG+IF + LDGS 
Sbjct: 589 LRKVVHSGSAGRTNHPWFSPDGKSIVFTSDYAAVSAEPISNAHHYQPYGDIFVVNLDGSG 648

Query: 658 LKRLTQNSFEDGTPAWGPRFIRPVDVE-EVKNEQCAFEDCHWLNETPNQRDWGAALEPEK 716
           L RLT NS+EDGTPAW P+ IRPVDV+ +V    C+FEDCHWL+ TPN     A     K
Sbjct: 649 LHRLTHNSYEDGTPAWAPKVIRPVDVKLQVDGPHCSFEDCHWLSNTPNHGVEAAPWVLAK 708

Query: 717 VQCGV 721
            QCG+
Sbjct: 709 PQCGL 713

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520365|ref|XP_003630471.1| Protein tolB [Medicago truncatula] gi|355524493|gb|AET04947.1| Protein tolB [Medicago truncatula]

 Score =  894 bits (2310), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/688 (66%), Positives = 529/688 (76%), Gaps = 45/688 (6%)

Query: 22  ADEDSSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSP 81
            +ED+SS  SIIFTTLGR DYAFDIY+LPI        E+++TDG SVNFNG F      
Sbjct: 24  VEEDASSSDSIIFTTLGRPDYAFDIYSLPIHHH-YHHQELQLTDGHSVNFNGQF------ 76

Query: 82  FLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALE 141
                L N T I+    QD   PPPLQL+YVTER G   IYYDAVY  T +         
Sbjct: 77  -----LPNLTSIKLLTHQD---PPPLQLVYVTERTGFPTIYYDAVYTTTTK--------- 119

Query: 142 QHGAEVSTRVQVPLL--DLNEVNGGVISMKDKPILS--GEYLIYVSTHENPGTPRTSWAA 197
                ++ R+Q+PLL   L +     +S+KDKP LS  G+YLIYVSTHE+PG  R SW A
Sbjct: 120 -----INDRIQLPLLPNHLTQTQSQ-LSIKDKPSLSSDGQYLIYVSTHEDPGVQRVSWTA 173

Query: 198 VYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTR 257
           VYST LK+G TRRLTPYGVADFSPAVSP+GK+TAVASYG  GW GEVE L+TDIY+FLT 
Sbjct: 174 VYSTHLKSGNTRRLTPYGVADFSPAVSPTGKWTAVASYGGNGWSGEVEDLTTDIYVFLTH 233

Query: 258 DGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP 317
           DGT R K+V++GGWP WVD+ T++FHR+   D W+S+Y+ IL      S+ SV I+RVTP
Sbjct: 234 DGTHRYKVVDHGGWPSWVDDRTIYFHRRGN-DGWLSIYRAILTTD---SSYSVLIERVTP 289

Query: 318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI 377
           PGLH FTPATSPGNNKFIAVATRRP S++RHIELFDLV N+F ELTRFVSP THHLNPFI
Sbjct: 290 PGLHVFTPATSPGNNKFIAVATRRPGSNFRHIELFDLVNNEFKELTRFVSPNTHHLNPFI 349

Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE 437
           SPDS+RVGYHKCRG  +  + + Q +LEN++SP+P+++LFRF GSFP FSP GDRIA+VE
Sbjct: 350 SPDSARVGYHKCRGKES--NTSPQFMLENVRSPVPNLTLFRFTGSFPVFSPSGDRIAYVE 407

Query: 438 FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV 497
            PGVYVVN DGSNR++V    AFST WD VR  V+YT+ G  FASES+EVDIISI+VD  
Sbjct: 408 MPGVYVVNRDGSNRKKVSDAMAFSTAWDRVRPGVIYTAVGETFASESTEVDIISIDVDR- 466

Query: 498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP 557
              + V++LT +GKNNAFPS SPDGKWIVFRS R+G+KNLYIMDA  GE  GL RLTEGP
Sbjct: 467 ---NFVKKLTLDGKNNAFPSPSPDGKWIVFRSGRSGHKNLYIMDAVHGEKNGLKRLTEGP 523

Query: 558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
           WSDTMCNWSPDGEWIAFASDR +PGSGSFE+YLIHP+GTGLRKLI SGS GR NHPYFSP
Sbjct: 524 WSDTMCNWSPDGEWIAFASDRHDPGSGSFEIYLIHPDGTGLRKLIHSGSGGRTNHPYFSP 583

Query: 618 DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677
           DGKS+VFTSDY GISAEPIS PH YQPYGEIF ++LDGS L RLT NS+EDGTPAW P++
Sbjct: 584 DGKSMVFTSDYAGISAEPISNPHHYQPYGEIFTVRLDGSGLTRLTHNSYEDGTPAWSPKY 643

Query: 678 IRPVDVEEVK-NEQCAFEDCHWLNETPN 704
           I+PV+VE  K    C+FEDCHWLN  PN
Sbjct: 644 IKPVNVEMPKGGPYCSFEDCHWLNNMPN 671

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518561|ref|XP_003527947.1| PREDICTED: uncharacterized protein LOC100791865 [Glycine max]

 Score =  878 bits (2269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/710 (62%), Positives = 529/710 (74%), Gaps = 50/710 (7%)

Query: 20  ATADEDSSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTAN------EIKITDGESVNFNG 73
             A+EDS+S +SIIFTTLGR+ YAFDIY+LP+  +           E+ +TDG SVNFNG
Sbjct: 55  CAAEEDSTSTASIIFTTLGRASYAFDIYSLPVPVQQQQQQPLSPSQELLLTDGHSVNFNG 114

Query: 74  HFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRN 133
           HF           L N + IQ P     +  PPLQL+YVTERNG   I+YDA+Y  +   
Sbjct: 115 HF-----------LSNSSAIQLP-----KHSPPLQLVYVTERNGYPTIFYDAIYSSSM-- 156

Query: 134 TRSRTALEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILS--GEYLIYVSTHENPGTP 191
                        VS R+Q+PLL  N ++    S+KDKP ++  G+YL+YVS+HENPG P
Sbjct: 157 -------------VSNRIQIPLLS-NHLSDA--SIKDKPSVTPDGQYLLYVSSHENPGVP 200

Query: 192 RTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDI 251
           R SW AVYST+L++GLT+RLTPYGVADFSP++SPSG +TAVASYG  GW GEVE L+TDI
Sbjct: 201 RASWTAVYSTQLESGLTQRLTPYGVADFSPSLSPSGLWTAVASYGPHGWAGEVEDLTTDI 260

Query: 252 YIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVS 311
           Y+FLT DGT R KIVE+GGWP WVD+ TL+FHR+ + D W S+Y+ ILP     S +SV 
Sbjct: 261 YVFLTHDGTHRFKIVEHGGWPTWVDDRTLYFHRRGQ-DHWWSIYRAILPSNAPFSVDSVF 319

Query: 312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTH 371
           ++RVTPPGLHAFTPATSPGNN FIAVATRRP S++RHIELFDL  N+F ELTR VSP +H
Sbjct: 320 VERVTPPGLHAFTPATSPGNNNFIAVATRRPGSNFRHIELFDLASNEFTELTRLVSPNSH 379

Query: 372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGD 431
           HLNPFISPDS+RVGYHKCRG         Q  LEN++SP+P ++LFRF GSFP FSP GD
Sbjct: 380 HLNPFISPDSTRVGYHKCRG-EPNAHSTPQFFLENVRSPVPGLTLFRFVGSFPVFSPSGD 438

Query: 432 RIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS 491
           RIA+VE PGVYVVN DGSN R+V    AFST WD VR  V+YT+ G  FA ESS+VDI+S
Sbjct: 439 RIAYVEMPGVYVVNRDGSNLRKVSNAMAFSTAWDRVRPGVIYTAIGETFAPESSQVDIVS 498

Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
           I   DVD  ++V+RLT +GKNNAFPS SPDGKWIVFRS R+G+KNLYIMDA  GE   L 
Sbjct: 499 I---DVDHENSVKRLTLDGKNNAFPSPSPDGKWIVFRSGRSGHKNLYIMDAVDGEKKELR 555

Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
           RLTEGPW+DTMCNWSPDGEWIAFASDR +PGSGSFE+YLIHPNGTGLRKLIQSGS GR N
Sbjct: 556 RLTEGPWTDTMCNWSPDGEWIAFASDRHDPGSGSFEIYLIHPNGTGLRKLIQSGSGGRTN 615

Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
           HPYFSPDGKS+ FTSDY GISAEPIS PH YQPYGEIF ++LDGS +KRLT NS+EDGTP
Sbjct: 616 HPYFSPDGKSLTFTSDYAGISAEPISNPHHYQPYGEIFTVRLDGSGIKRLTHNSYEDGTP 675

Query: 672 AWGPRFIRPVDVEEVKNEQCAFEDCHWLNETPNQRDWGAALEPEKVQCGV 721
           AW P+++ PV+V +     C+F+DCHWLN  P    +G  +   K QC  
Sbjct: 676 AWSPKYMPPVNVPK-GGPYCSFDDCHWLNNMPISTAFG--VSKAKPQCAA 722

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499097|ref|XP_004160721.1| PREDICTED: protein TolB-like [Cucumis sativus]

 Score =  865 bits (2236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/674 (62%), Positives = 521/674 (77%), Gaps = 20/674 (2%)

Query: 31  SIIFTTLGRSDYAFDIYTLPI--SDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLR 88
           SI+FTTLGRS YAFDIYTLP   +  P+  +EI ITDG+ VNFNG+FPS +S      L 
Sbjct: 28  SIVFTTLGRSFYAFDIYTLPADANKNPSLPDEILITDGQYVNFNGYFPSSTSSSSLISLL 87

Query: 89  NQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVS 148
                     Q     P  +L+YVTERNG S I+YDAV+     + R R+ LE     + 
Sbjct: 88  TN--------QSHSFTPDFELVYVTERNGISTIFYDAVFGGIGVSARRRSELE-----IP 134

Query: 149 TRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT 208
            R+Q+PLLD  + N   +S KD+P LSG+YL+YVSTHE+P   RTSWAAVYS  LK+GLT
Sbjct: 135 HRLQIPLLDEEQKNEAKVSFKDRPSLSGDYLVYVSTHEDPRESRTSWAAVYSRNLKSGLT 194

Query: 209 RRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVEN 268
           RRLTPYG+ADFSP+VSPSG +TAVASYG KGW G+VE LSTD+YIFLTRDG++RVK+VE+
Sbjct: 195 RRLTPYGIADFSPSVSPSGIWTAVASYGEKGWAGDVEELSTDLYIFLTRDGSRRVKVVEH 254

Query: 269 GGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATS 328
           GGWPCW D+STL+FHR+ + D W+S+Y+ ILP  G +S +SV I+R+TPPGLH FTPATS
Sbjct: 255 GGWPCWADDSTLYFHRRGD-DQWLSIYRAILPSHGEISLDSVIIERLTPPGLHVFTPATS 313

Query: 329 PGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHK 388
             N   IAVATRRP SS+RHIELF++V  +F ELT+ VSP +HH NPF+S D +R+GYHK
Sbjct: 314 SANKNLIAVATRRPDSSFRHIELFNIVTGEFKELTKTVSPNSHHFNPFVSADGTRIGYHK 373

Query: 389 CRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDG 448
           CRG   R   +N LL EN++SP+ ++SLFR   SFPSFSP GDRIA+  FPG+YV+  DG
Sbjct: 374 CRGDGNRRK-SNLLLFENVRSPVSNLSLFRIAVSFPSFSPAGDRIAYANFPGLYVIERDG 432

Query: 449 SNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508
           SN+R+V+   AFST WDPVR+ VVYTS GP+FA  SS+VDIIS+NVD+ +    +++LTT
Sbjct: 433 SNQREVFSGAAFSTAWDPVRKGVVYTSAGPDFAPVSSQVDIISVNVDEEE--RNIKKLTT 490

Query: 509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
           NG+NNAFPS SPDGKWIVFRS +TGYKNLYIMDA  GE  GL RLTEG W+DTMC+WSP+
Sbjct: 491 NGENNAFPSPSPDGKWIVFRSGQTGYKNLYIMDAVEGESKGLRRLTEGQWTDTMCSWSPE 550

Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
           G+WIAF+SDR+NPG G+F+++LIHPNGTGLRKL QSG  GRANHP + PDGK++VFT+D 
Sbjct: 551 GDWIAFSSDRENPGGGNFDLFLIHPNGTGLRKLFQSGLGGRANHPNWRPDGKALVFTTDN 610

Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVKN 688
            GIS EP+S PH YQPYGEI+ IKLDGSDL+RLT NS+EDGTP W PR+I PV+VE + +
Sbjct: 611 AGISGEPVSNPHHYQPYGEIYTIKLDGSDLQRLTHNSYEDGTPTWSPRYINPVNVESLYD 670

Query: 689 -EQCAFEDCHWLNE 701
            E C FEDCHWLN+
Sbjct: 671 VEPCGFEDCHWLNQ 684

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463434|ref|XP_004149439.1| PREDICTED: protein TolB-like [Cucumis sativus]

 Score =  865 bits (2234), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/674 (62%), Positives = 520/674 (77%), Gaps = 20/674 (2%)

Query: 31  SIIFTTLGRSDYAFDIYTLPI--SDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLR 88
           SI+FTTLGRS YAFDIYTLP   +  P+  +EI ITDG+ VNFNG+FPS +S      L 
Sbjct: 28  SIVFTTLGRSFYAFDIYTLPADANKNPSLPDEILITDGQYVNFNGYFPSSTSSSSLISLL 87

Query: 89  NQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVS 148
                     Q     P  +L+YVTERNG S I+YDAV+     + R R+ LE     + 
Sbjct: 88  TN--------QSHSFTPDFELVYVTERNGISTIFYDAVFGGIGVSARRRSELE-----IP 134

Query: 149 TRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT 208
            R+Q+PLLD  + N   +S KD+P LSG+YL+YVSTHE+P   RTSWAAVYS  LK+GLT
Sbjct: 135 HRLQIPLLDEEQKNEARVSFKDRPSLSGDYLVYVSTHEDPRESRTSWAAVYSRNLKSGLT 194

Query: 209 RRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVEN 268
           RRLTPYG+ADFSP+VSPSG +TAVASYG KGW G+VE LSTD+YIFLTRDG++RVK+VE+
Sbjct: 195 RRLTPYGIADFSPSVSPSGIWTAVASYGEKGWAGDVEELSTDLYIFLTRDGSRRVKVVEH 254

Query: 269 GGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATS 328
           GGWPCW D+STL+FHR+ + D W+S+Y+ ILP  G +S +SV I+R+TPPGLH FTPATS
Sbjct: 255 GGWPCWADDSTLYFHRRGD-DQWLSIYRAILPSHGEISLDSVIIERLTPPGLHVFTPATS 313

Query: 329 PGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHK 388
             N   IAVATRRP SS+RHIELF++V  +F ELT+ VSP +HH NPF+S D +R+GYHK
Sbjct: 314 SANKNLIAVATRRPDSSFRHIELFNIVTGEFKELTKTVSPNSHHFNPFVSADGTRIGYHK 373

Query: 389 CRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDG 448
           CRG   R   +N LL E ++SP+ ++SLFR   SFPSFSP GDRIA+  FPG+YV+  DG
Sbjct: 374 CRGDGNRRK-SNLLLFETVRSPVSNLSLFRIAVSFPSFSPAGDRIAYANFPGLYVIERDG 432

Query: 449 SNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT 508
           SN+R+V+   AFST WDPVR+ VVYTS GP+FA  SS+VDIIS+NVD+ +    +++LTT
Sbjct: 433 SNQREVFSGAAFSTAWDPVRKGVVYTSAGPDFAPVSSQVDIISVNVDEEE--RNIKKLTT 490

Query: 509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
           NG+NNAFPS SPDGKWIVFRS +TGYKNLYIMDA  GE  GL RLTEG W+DTMC+WSP+
Sbjct: 491 NGENNAFPSPSPDGKWIVFRSGQTGYKNLYIMDAVEGESKGLRRLTEGQWTDTMCSWSPE 550

Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY 628
           G+WIAF+SDR+NPG GSF+++LIHPNGTGLRKL QSG  GRANHP + PDGK++VFT+D 
Sbjct: 551 GDWIAFSSDRENPGGGSFDLFLIHPNGTGLRKLFQSGLGGRANHPNWRPDGKALVFTTDN 610

Query: 629 GGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVKN 688
            GIS EP+S PH YQPYGEI+ IKLDGSDL+RLT NS+EDGTP W PR+I PV+VE + +
Sbjct: 611 AGISGEPVSNPHHYQPYGEIYTIKLDGSDLQRLTHNSYEDGTPTWSPRYINPVNVESLYD 670

Query: 689 -EQCAFEDCHWLNE 701
            E C FEDCHWLN+
Sbjct: 671 VEPCGFEDCHWLNQ 684

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	721
TAIR|locus:2036916	706	AT1G21680 "AT1G21680" [Arabido	0.948	0.968	0.643	1.1e-243
TAIR|locus:2036982	703	AT1G21670 [Arabidopsis thalian	0.804	0.825	0.587	3.9e-203
TAIR|locus:2141405	652	AT4G01870 "AT4G01870" [Arabido	0.603	0.667	0.439	7.1e-103
UNIPROTKB|Q74H67	432	tolB "Protein TolB" [Geobacter	0.303	0.506	0.270	4.4e-14
TIGR_CMR|GSU_0025	432	GSU_0025 "tolB protein" [Geoba	0.303	0.506	0.270	4.4e-14
ASPGD|ASPL0000037579	679	AN2818 [Emericella nidulans (t	0.217	0.231	0.327	4e-11
UNIPROTKB|P0A855	430	tolB [Escherichia coli K-12 (t	0.166	0.279	0.325	4.2e-10
TIGR_CMR|SPO_3109	439	SPO_3109 "tolB protein, putati	0.262	0.430	0.268	2e-08
TIGR_CMR|CBU_0090	437	CBU_0090 "tolB protein" [Coxie	0.173	0.286	0.338	3.3e-08
UNIPROTKB|Q9KR11	450	tolB "Protein TolB" [Vibrio ch	0.184	0.295	0.304	4.4e-08

TAIR|locus:2036916 AT1G21680 "AT1G21680" [Arabidopsis thaliana (taxid:3702)]

 Score = 2348 (831.6 bits), Expect = 1.1e-243, P = 1.1e-243
 Identities = 452/702 (64%), Positives = 537/702 (76%)

Query:     7 FCSLLYLLSAVFRATADEDSSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDG 66
             F SLL  L        + ++    +IIFTTLGRS Y FDI+ L  +  P+ + E++ITDG
Sbjct:     9 FASLLLRLHLSTAEHQNSNAGDGDTIIFTTLGRSHYEFDIFALSTTQPPSVSGELRITDG 68

Query:    67 ESVNFNGHXXXXXXXXXXXXXRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAV 126
             ESVNFNG+              ++TLIQ    +DS    PL LIYVTERNGTS++YYD V
Sbjct:    69 ESVNFNGYFPSPSPALLSLLP-DETLIQM---EDSS---PLHLIYVTERNGTSSLYYDLV 121

Query:   127 YY-DTRRNTRSRTALEQHGAEVSTRVQVPLLD-LNEVNGGVI-SMKDKPILSGEYLIYVS 183
             Y  ++   T+ R+ LE       +RVQVPLL   + ++G  + S KDKP LSGE+++YVS
Sbjct:   122 YGGNSDFKTKRRSVLE-----APSRVQVPLLSRFDHLSGMTVNSFKDKPSLSGEFIVYVS 176

Query:   184 THENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGE 243
             THE+ G PR SW AVYSTELKTGLTRRLTP GVADFSPAVSPSG  TAVASYG +GW GE
Sbjct:   177 THESSGEPRASWTAVYSTELKTGLTRRLTPSGVADFSPAVSPSGNLTAVASYGERGWTGE 236

Query:   244 VEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTG 303
             VE L TDIY+FLTRDG+ RVK+VE+GGWPCWVDESTL+FHR+SEED WISVY+ ILP+ G
Sbjct:   237 VEELRTDIYVFLTRDGSHRVKVVEHGGWPCWVDESTLYFHRRSEEDGWISVYRAILPENG 296

Query:   304 LVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELT 363
              ++TESV+IQRVTPPG+HAFTPATSP N++F+AVATRRP S YRH+ELFDL +N+FIELT
Sbjct:   297 PLTTESVTIQRVTPPGVHAFTPATSPNNHEFVAVATRRPGSDYRHVELFDLKRNEFIELT 356

Query:   364 RFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSF 423
             R V+PK+HHLNPF+SPDSSRVGYH CRG +     +  L LENI++   D+SLFR DGSF
Sbjct:   357 RLVAPKSHHLNPFLSPDSSRVGYHSCRGDANGRR-SPLLFLENIQTTTRDLSLFRIDGSF 415

Query:   424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFAXX 483
             PSFSP GDRIA+V+ PGV+VV  DGS +R+VY   AFST WDPVR  +VY+S GP FA  
Sbjct:   416 PSFSPGGDRIAYVKMPGVFVVKPDGSGQREVYKGMAFSTAWDPVRPGIVYSSSGPTFATE 475

Query:   484 XXXXXXXXXXXXXXXXXXAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543
                               +VRRLTTNGKNNAFP  SPDGK IVFRS RTG+KNLYIMDAE
Sbjct:   476 RTEVDVISIDVDAADKSSSVRRLTTNGKNNAFPWPSPDGKRIVFRSGRTGHKNLYIMDAE 535

Query:   544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603
              GE  GL RLTEG W+DTMCNWSPDGEWIAFASDR++PGSGSFE++LIHPNGTGLRKLIQ
Sbjct:   536 KGESGGLWRLTEGAWTDTMCNWSPDGEWIAFASDRESPGSGSFELFLIHPNGTGLRKLIQ 595

Query:   604 SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663
             SG+ GR NHP FSPD KS+VFTSDY GISAEPIS PH YQPYG+IF +KLDGS+++RLT 
Sbjct:   596 SGTGGRTNHPIFSPDSKSLVFTSDYAGISAEPISNPHHYQPYGDIFTVKLDGSNVRRLTH 655

Query:   664 NSFEDGTPAWGPRFIRPVDVE-EVKNE-QCAFEDCHWLNETP 703
             NS+EDGTPAW PRFI P +VE + +N+ +C+FEDCHWLN+ P
Sbjct:   656 NSYEDGTPAWAPRFIHPNNVELQRRNDSRCSFEDCHWLNKYP 697

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TAIR|locus:2036982 AT1G21670 [Arabidopsis thaliana (taxid:3702)]

 Score = 1778 (630.9 bits), Expect = 3.9e-203, Sum P(2) = 3.9e-203
 Identities = 356/606 (58%), Positives = 424/606 (69%)

Query:   104 PPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNG 163
             P  + LIYVTER GT ++ YD V+ D                 V +R+QVPL    E   
Sbjct:    97 PQDVHLIYVTERAGTPSLNYDVVHSDN----------------VGSRIQVPLFSGEEQQS 140

Query:   164 G--VISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSP 221
             G  V SMKD P+L+  YL++VSTHENPG P  SWAAVYSTEL+T  TRRLTP G+ADFSP
Sbjct:   141 GMNVNSMKDTPVLTNGYLVHVSTHENPGKPMASWAAVYSTELRTKSTRRLTPLGIADFSP 200

Query:   222 AVSPSGKYTAVASYGNKGWDGE-VEM-LSTDIYIFLTRDGTQRVKIVENGGWPCWVDEST 279
             AVSPSGK+TAVAS+G KGW    VE  +S+D+Y+FLT+DGTQRVK+VE GGWP WVD+ST
Sbjct:   201 AVSPSGKWTAVASFGEKGWTWSMVEKEISSDVYVFLTQDGTQRVKVVEQGGWPRWVDDST 260

Query:   280 LFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVAT 339
             L+FHRKS+ D WISVY+ ILP+TG V+T+SV+IQRVTPPGLHAFTPATSP NN FIAVAT
Sbjct:   261 LYFHRKSD-DGWISVYRAILPKTGPVTTKSVTIQRVTPPGLHAFTPATSPNNNNFIAVAT 319

Query:   340 RRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST-REDG 398
             RRP S  RH+ELFDL KN+F+ELTR VSPK+HH NPF+SPDSSRVGYH CRG +T R+  
Sbjct:   320 RRPGSEIRHVELFDLKKNEFVELTRLVSPKSHHFNPFLSPDSSRVGYHSCRGDATGRKTP 379

Query:   399 NNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKN 458
              N  LL+++K+   D+SLFRFDG+FPS SP+GDR AFV F GV+VVN DGS  RQ+  + 
Sbjct:   380 RN--LLQSLKTTSNDLSLFRFDGAFPSISPEGDRFAFVSFTGVFVVNPDGSGLRQLLPQM 437

Query:   459 AFSTVWDPVREAVVYTSGGPEFAXXXXXXXXXXXXXXXXXXXXAVRRLTTNGKNNAFPSV 518
              F TVWDP+R  +VYTS GP  A                    AV++LTT G+NNAFP  
Sbjct:   438 GFGTVWDPIRHGIVYTSSGPALAPGKSQIDILAINVDAPSPATAVKKLTTTGENNAFPWP 497

Query:   519 SPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578
             SPDGK IVFRS R+G KNLYIMDAE GE  GL RLT G W+DT+  WSPDG WI FAS+R
Sbjct:   498 SPDGKRIVFRSARSGTKNLYIMDAEKGESGGLFRLTNGNWNDTIATWSPDGNWIVFASNR 557

Query:   579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPIST 638
             + PG+    +Y++HP+GTGLRKL Q+ +   + HP FSPD K IVFT+ Y GISAE I  
Sbjct:   558 EFPGTLLMNIYVVHPDGTGLRKLAQNLTGLVSMHPMFSPDSKRIVFTTIYAGISAEQIGN 617

Query:   639 PHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEEVKN--EQCAFEDC 696
             PH   P  EIF + LDGS L RLT NS EDG P W P+     DV   K     C+ +D 
Sbjct:   618 PHFNVPSSEIFTVNLDGSGLTRLTHNSVEDGPPMWFPKIKATGDVAWPKRFGPSCSIQDF 677

Query:   697 HWLNET 702
                N T
Sbjct:   678 KTQNTT 683

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TAIR|locus:2141405 AT4G01870 "AT4G01870" [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 7.1e-103, Sum P(3) = 7.1e-103
 Identities = 202/460 (43%), Positives = 272/460 (59%)

Query:   170 DKPILS-GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTR--RLTPYGVADFSPAVSPS 226
             D+PI++    L ++S HE P     +W+A+Y+ EL +      R+TP   ADFSPAVS S
Sbjct:    90 DRPIITQNNRLYFISAHEQPDRYFKNWSALYTVELNSAKREVTRVTPPDTADFSPAVSQS 149

Query:   227 GKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKS 286
             G + AVASYG + W GE   ++TDI +F       RV I E GGWP W  +ST+FFH ++
Sbjct:   150 GDFLAVASYGTRSWGGEFHEINTDITVFKASKPETRVVICERGGWPTWSGDSTVFFHHQA 209

Query:   287 EEDDWISVYKVILPQTGLVSTE-SVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSS 345
             + D W S+++V +P+     T+  ++  RVTP GLH FTPA    + K IA+ATRR   +
Sbjct:   210 D-DGWWSIFRVDIPENFTEYTDFPITPIRVTPSGLHCFTPAAFR-DGKRIALATRRRGVN 267

Query:   346 YRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLL-L 404
             +RHIE++DL    F  +T  ++P  HH NPF+SPDS  +GYH+ RG ST+  G + +  +
Sbjct:   268 HRHIEIYDLENTTFQPVTESLNPSFHHYNPFVSPDSEFLGYHRFRGESTQ--GESIVPNI 325

Query:   405 ENIKSPLPDISLFRFDGSFPSFSPKGDRIAF-VEFP---GVYVVNSDGSNR-RQVYFKNA 459
             E+I SP+  + L R +GSFPS SP GD IA   +F    G+ V  SDGS R   +  + A
Sbjct:   326 ESIVSPIKTLRLLRINGSFPSSSPNGDLIALNSDFDINGGIKVSKSDGSKRWTLIKDRTA 385

Query:   460 FSTVWDPVREAVVYTSGGPEFAXXXXXXXXXXXXXXXXXXXXA-------VRRLTT-NGK 511
             F   W P    V+YTS GP F+                            V+ LT  N  
Sbjct:   386 FYNSWSPTERHVIYTSLGPIFSPARIAVQIARIKFDPSDLTADKEDLPCDVKILTLENTG 445

Query:   512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE--GYGLHRLTEGPWSDTMCNWSPDG 569
             NNAFPS SPDGK IVFRS R+G+KNLYI+DA  GE  G G+ RLT+GPW DTM  WSP G
Sbjct:   446 NNAFPSCSPDGKSIVFRSGRSGHKNLYIVDAVNGESNGGGIRRLTDGPWIDTMPCWSPKG 505

Query:   570 EWIAFASDRDNP-GSGSFEMYLIHPNGTGLRKLIQSGSAG 608
             + I F+S+R NP  +  F  Y++ P+GTGLR++  SG  G
Sbjct:   506 DLIGFSSNRHNPENTAVFGAYVVRPDGTGLRRIQISGPEG 545

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

UNIPROTKB|Q74H67 tolB "Protein TolB" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 186 (70.5 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
 Identities = 64/237 (27%), Positives = 102/237 (43%)

Query:   396 EDGNNQLLLENIKSP-LPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQV 454
             E GN ++ L +     +  ++  R     P FSP G  +A+  +      N D   RR++
Sbjct:   179 ESGNKEIYLMDYDGHNVQRLTKNRSINLNPDFSPNGRELAYTSYRRG---NPD-LFRREI 234

Query:   455 YF-KNAFSTVWDPVREAVVYTSGGPEFAXXXXXXXXXXXXXXXXXXXXAVRRLTTNGKNN 513
             +    A  +    +     ++  G + A                      RRLTT+   +
Sbjct:   235 FTGTEAVVSSHRGINVTGTWSPDGKQLALAMSRDGNSEIYAISRDGRDP-RRLTTHQAID 293

Query:   514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIA 573
               P+ SPDGK I F S R G   ++IM+A+G +   + RLT     +    WSP G+ + 
Sbjct:   294 VSPAWSPDGKRIAFVSDRLGKPQVFIMNADGSD---VRRLTTSGAYNVSPRWSPKGDRLV 350

Query:   574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
             +         G F++Y I  +GTG  +L   GS     HP +SPDG+ + F+S   G
Sbjct:   351 YCRQE-----GGFQIYSIATDGTGDTRLTSEGSN---EHPRWSPDGRFLTFSSTRDG 399

GO:0006810 "transport" evidence=ISS

GO:0019534 "toxin transporter activity" evidence=ISS

TIGR_CMR|GSU_0025 GSU_0025 "tolB protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 186 (70.5 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
 Identities = 64/237 (27%), Positives = 102/237 (43%)

Query:   396 EDGNNQLLLENIKSP-LPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQV 454
             E GN ++ L +     +  ++  R     P FSP G  +A+  +      N D   RR++
Sbjct:   179 ESGNKEIYLMDYDGHNVQRLTKNRSINLNPDFSPNGRELAYTSYRRG---NPD-LFRREI 234

Query:   455 YF-KNAFSTVWDPVREAVVYTSGGPEFAXXXXXXXXXXXXXXXXXXXXAVRRLTTNGKNN 513
             +    A  +    +     ++  G + A                      RRLTT+   +
Sbjct:   235 FTGTEAVVSSHRGINVTGTWSPDGKQLALAMSRDGNSEIYAISRDGRDP-RRLTTHQAID 293

Query:   514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIA 573
               P+ SPDGK I F S R G   ++IM+A+G +   + RLT     +    WSP G+ + 
Sbjct:   294 VSPAWSPDGKRIAFVSDRLGKPQVFIMNADGSD---VRRLTTSGAYNVSPRWSPKGDRLV 350

Query:   574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
             +         G F++Y I  +GTG  +L   GS     HP +SPDG+ + F+S   G
Sbjct:   351 YCRQE-----GGFQIYSIATDGTGDTRLTSEGSN---EHPRWSPDGRFLTFSSTRDG 399

GO:0006810 "transport" evidence=ISS

GO:0019534 "toxin transporter activity" evidence=ISS

ASPGD|ASPL0000037579 AN2818 [Emericella nidulans (taxid:162425)]

 Score = 158 (60.7 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
 Identities = 58/177 (32%), Positives = 83/177 (46%)

Query:   508 TNGKNNAFPSVSPDGKWIVFR-----STR--TGYKNLYIMDAEGGEGYGLHRLTEGPWSD 560
             T+  N+ FPS S DG  IVFR     ST   TG   L +MD        +  LT   W D
Sbjct:   510 TSIMNSGFPSYSHDGSKIVFRVWGANSTNGDTGQLGLRVMDLNTRN---ITALTN-EW-D 564

Query:   561 TMCNWSPDG--EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD 618
              +  +SP G  E I F       G  ++++  I P+GT L  L  SG  G   H  +S D
Sbjct:   565 NLPFFSPAGFEERIVFTR---KTGVYNYDVCTIKPDGTDLEVLTSSG--GNDAHAVWSYD 619

Query:   619 GKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
             G+ I++++   G   E       +QPYG++  +  DG + + LT + +ED  P   P
Sbjct:   620 GR-IMYSTGMFGFQYECALYDDTFQPYGQVMIMDADGGNKQVLTDSIWEDSMPLLVP 675

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|P0A855 tolB [Escherichia coli K-12 (taxid:83333)]

 Score = 176 (67.0 bits), Expect = 4.2e-10, P = 4.2e-10
 Identities = 42/129 (32%), Positives = 72/129 (55%)

Query:   502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
             AVR++ +  ++N  P+ SPDG  + F  ++TG  NLY+MD   G+   + ++T+G  ++T
Sbjct:   235 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNT 291

Query:   562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
                W PD + +AF SD+    +G  ++Y ++ NG   +++   GS  +      S DGK 
Sbjct:   292 EPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRITWEGSQNQDAD--VSSDGKF 345

Query:   622 IVFTSDYGG 630
             +V  S  GG
Sbjct:   346 MVMVSSNGG 354

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043213 "bacteriocin transport" evidence=IEA;IMP

GO:0017038 "protein import" evidence=IEA;IMP

GO:0015031 "protein transport" evidence=IMP

GO:0042597 "periplasmic space" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

TIGR_CMR|SPO_3109 SPO_3109 "tolB protein, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 161 (61.7 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 58/216 (26%), Positives = 95/216 (43%)

Query:   424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKN---AFSTVWDPVREAVVYTSG 476
             P FSP GDR+ +      FP +++++     +R +  ++   +F+  + P  + V+++  
Sbjct:   210 PRFSPTGDRVLYTSYQGGFPRIHILDVGQVQQRVLQSQDGTMSFAPRFSPDGQTVLFS-- 267

Query:   477 GPEFAXXXXXXXXXXXXXXXXXXXXAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
                 A                       RLT+       PS +PDG  IVF S R+G   
Sbjct:   268 ---LAQGGNTDLYAMNIASGQST-----RLTSAPSIETAPSYAPDGSRIVFESDRSGTPQ 319

Query:   537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
             LY+M A GGE   +    +G +   +  WSP G+ IAF         G F + ++  +G+
Sbjct:   320 LYVMSAAGGEATRIS-FGQGRYGTPV--WSPRGDLIAFTKQ----SKGRFHIGVMRADGS 372

Query:   597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGIS 632
               R L  S        P +SP+G+ I+FT +  G S
Sbjct:   373 EERLLTASFLD---EGPTWSPNGRVIMFTRETQGAS 405

GO:0006810 "transport" evidence=ISS

GO:0019534 "toxin transporter activity" evidence=ISS

TIGR_CMR|CBU_0090 CBU_0090 "tolB protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 159 (61.0 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 47/139 (33%), Positives = 71/139 (51%)

Query:   504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS-DTM 562
             +RL+     N  P+ SPDGK +    T+TG   +YI++   G    L  +T+G WS DT 
Sbjct:   242 QRLSEAPGINGAPAFSPDGKQLALVLTKTGNPKIYILNLADGH---LREITKG-WSIDTE 297

Query:   563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622
               WSPDG+ + F S+RD    G+ ++Y        + ++   G       P F PDGKSI
Sbjct:   298 PAWSPDGKSLLFTSNRD----GTPQIYNYSFADGSINRVTYRGDYNA--RPSFMPDGKSI 351

Query:   623 VFTS-DYG--GISAEPIST 638
             +    + G  GI+ + +ST
Sbjct:   352 IMMHRENGLFGIARQDLST 370

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0019534 "toxin transporter activity" evidence=ISS

UNIPROTKB|Q9KR11 tolB "Protein TolB" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 158 (60.7 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 49/161 (30%), Positives = 83/161 (51%)

Query:   505 RLTTNGKNNAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563
             RL    K     P+ SPDG+ + + S + G   +Y+M+   G+     +LT  P  +   
Sbjct:   213 RLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKR---EKLTSFPRHNGAP 269

Query:   564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH--PYFSPDGKS 621
              +SPDG+ +A    +    +G+ ++Y +       R+L +  S GR+N+  P++ PDGKS
Sbjct:   270 RFSPDGKTLALVLSK----TGNLQVYTMD---LATRRLTEVTS-GRSNNTEPFWHPDGKS 321

Query:   622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
             ++FTSD GG            +P  +I+++ L G + KRLT
Sbjct:   322 LIFTSDRGG------------KP--QIYQVNLSGGETKRLT 348

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.1__2360__AT1G21680.1 annotation not avaliable (706 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	721
TIGR02800	417	TIGR02800, propeller_TolB, tol-pal system beta pro	2e-30
PRK05137	435	PRK05137, tolB, translocation protein TolB; Provis	4e-23
COG0823	425	COG0823, TolB, Periplasmic component of the Tol bi	3e-19
PRK02889	427	PRK02889, tolB, translocation protein TolB; Provis	4e-19
COG0823	425	COG0823, TolB, Periplasmic component of the Tol bi	2e-18
COG0823	425	COG0823, TolB, Periplasmic component of the Tol bi	3e-18
TIGR02800	417	TIGR02800, propeller_TolB, tol-pal system beta pro	4e-17
PRK03629	429	PRK03629, tolB, translocation protein TolB; Provis	2e-15
PRK04922	433	PRK04922, tolB, translocation protein TolB; Provis	6e-15
PRK05137	435	PRK05137, tolB, translocation protein TolB; Provis	6e-12
TIGR02800	417	TIGR02800, propeller_TolB, tol-pal system beta pro	2e-10
PRK00178	430	PRK00178, tolB, translocation protein TolB; Provis	2e-10
PRK01742	429	PRK01742, tolB, translocation protein TolB; Provis	2e-09
TIGR02800	417	TIGR02800, propeller_TolB, tol-pal system beta pro	3e-09
PRK00178	430	PRK00178, tolB, translocation protein TolB; Provis	1e-08
PRK03629	429	PRK03629, tolB, translocation protein TolB; Provis	2e-08
COG0823	425	COG0823, TolB, Periplasmic component of the Tol bi	3e-08
PRK01742	429	PRK01742, tolB, translocation protein TolB; Provis	3e-08
PRK04792	448	PRK04792, tolB, translocation protein TolB; Provis	3e-08
PRK04792	448	PRK04792, tolB, translocation protein TolB; Provis	4e-08
pfam07676	37	pfam07676, PD40, WD40-like Beta Propeller Repeat	4e-08
PRK04792	448	PRK04792, tolB, translocation protein TolB; Provis	6e-07
PRK01029	428	PRK01029, tolB, translocation protein TolB; Provis	9e-07
PRK01029	428	PRK01029, tolB, translocation protein TolB; Provis	1e-06
COG1506	620	COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin	4e-06
PRK04043	419	PRK04043, tolB, translocation protein TolB; Provis	8e-06
PRK00178	430	PRK00178, tolB, translocation protein TolB; Provis	3e-05
PRK04043	419	PRK04043, tolB, translocation protein TolB; Provis	3e-05
pfam07676	37	pfam07676, PD40, WD40-like Beta Propeller Repeat	6e-05
PRK01742	429	PRK01742, tolB, translocation protein TolB; Provis	4e-04
COG4946	668	COG4946, COG4946, Uncharacterized protein related	5e-04
PRK04792	448	PRK04792, tolB, translocation protein TolB; Provis	0.001
pfam07676	37	pfam07676, PD40, WD40-like Beta Propeller Repeat	0.002

>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat protein TolB

 Score =  124 bits (313), Expect = 2e-30
 Identities = 88/311 (28%), Positives = 131/311 (42%), Gaps = 65/311 (20%)

Query: 381 SSRVGYHKCRGGSTRE-------DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRI 433
           S+R+ Y    G   R        DG N   +   +S  P +S        P++SP G ++
Sbjct: 155 STRIAYVSKSGKGRRYELQVADYDGANPQTI--TRSREPILS--------PAWSPDGQKL 204

Query: 434 AFVEF----PGVYVVNSDGSNRRQV-YFKN-----AFSTVWDPVREAVVYTSGGPEFASE 483
           A+V F    P +YV +     R +V  F       AFS   D  + AV  +  G      
Sbjct: 205 AYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP--DGSKLAVSLSKDG------ 256

Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE 543
           + ++ ++     D+DG   + RLT     +  PS SPDGK I F S R G   +Y+MDA+
Sbjct: 257 NPDIYVM-----DLDG-KQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD 310

Query: 544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ 603
           GGE     RLT     +   +WSPDG+ IAF         G F + ++  +G G R L  
Sbjct: 311 GGE---ARRLTFRGNYNASPSWSPDGDLIAFVHREG----GGFNIAVMDLDGGGERVLTD 363

Query: 604 SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663
           +   G    P F+P+G+ I++ +  GG                 +  +  DG    RL  
Sbjct: 364 T---GLDESPSFAPNGRMILYATTRGGRGV--------------LGLVSTDGRFRARLPL 406

Query: 664 NSFEDGTPAWG 674
              +   PAW 
Sbjct: 407 GQGDVREPAWS 417

Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 417

>gnl|CDD|235351 PRK05137, tolB, translocation protein TolB; Provisional

 Score =  102 bits (256), Expect = 4e-23
 Identities = 70/263 (26%), Positives = 117/263 (44%), Gaps = 44/263 (16%)

Query: 422 SFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY--FKNA-FSTVWDPVREAVVYT 474
             P FSP    I ++ +    P VY+++   + +R++   F    F+  + P    VV +
Sbjct: 205 LTPRFSPNRQEITYMSYANGRPRVYLLDL-ETGQRELVGNFPGMTFAPRFSPDGRKVVMS 263

Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
                  S+    DI ++++          RLT +   +  PS SPDG  IVF S R+G 
Sbjct: 264 ------LSQGGNTDIYTMDL----RSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGS 313

Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
             LY+M+A+G       R++ G    +   WSP G+ IAF       G G F + ++ P+
Sbjct: 314 PQLYVMNADGS---NPRRISFGGGRYSTPVWSPRGDLIAFTKQ----GGGQFSIGVMKPD 366

Query: 595 GTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL 653
           G+G R L    ++G     P ++P+G+ I+F     G    P           +++ + L
Sbjct: 367 GSGERIL----TSGFLVEGPTWAPNGRVIMFFRQTPGSGGAP-----------KLYTVDL 411

Query: 654 DGSDLKRL-TQNSFEDGTPAWGP 675
            G + + + T     D  PAW P
Sbjct: 412 TGRNEREVPTPGDASD--PAWSP 432

Length = 435

>gnl|CDD|223893 COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

 Score = 90.6 bits (225), Expect = 3e-19
 Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 24/175 (13%)

Query: 504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK-NLYIMDAEGGEGYGLHRLTEGPWSDTM 562
           ++LT +G     P+ SPDGK + + S   G    +Y +D   G+      +     ++  
Sbjct: 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR---PVILNFNGNNGA 242

Query: 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622
             +SPDG  +AF+S RD    GS ++YL+  +G  L +L      G    P +SPDG  I
Sbjct: 243 PAFSPDGSKLAFSSSRD----GSPDIYLMDLDGKNLPRLTNG--FGINTSPSWSPDGSKI 296

Query: 623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677
           VFTSD GG                 I+   L+GS + RLT +   +  P W P  
Sbjct: 297 VFTSDRGGRPQ--------------IYLYDLEGSQVTRLTFSGGGNSNPVWSPDG 337

Length = 425

>gnl|CDD|235083 PRK02889, tolB, translocation protein TolB; Provisional

 Score = 90.0 bits (224), Expect = 4e-19
 Identities = 86/289 (29%), Positives = 128/289 (44%), Gaps = 58/289 (20%)

Query: 397 DGNN-QLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNR 451
           DG N Q  L    SP P IS        P++SP G ++A+V F    P VYV +     R
Sbjct: 184 DGQNAQSALS---SPEPIIS--------PAWSPDGTKLAYVSFESKKPVVYVHDLATGRR 232

Query: 452 RQVY-FKNAFST-VWDP--VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT 507
           R V  FK + S   W P     AV  +  G      +S++  ++      DG S +RRLT
Sbjct: 233 RVVANFKGSNSAPAWSPDGRTLAVALSRDG------NSQIYTVN-----ADG-SGLRRLT 280

Query: 508 TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWS 566
            +   +  P  SPDG+ I F S R G   +Y M A GG      R+T  G + +T    S
Sbjct: 281 QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG---AAQRVTFTGSY-NTSPRIS 336

Query: 567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS 626
           PDG+ +A+ S       G+F++Y+     TG    +   +   +  P F+P+G+ I++ +
Sbjct: 337 PDGKLLAYISRVG----GAFKLYVQDL-ATGQVTALTDTTRDES--PSFAPNGRYILYAT 389

Query: 627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
             GG S     +               DG   +RL+    +   P+WGP
Sbjct: 390 QQGGRSVLAAVS--------------SDGRIKQRLSVQGGDVREPSWGP 424

Length = 427

>gnl|CDD|223893 COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 60/215 (27%), Positives = 99/215 (46%), Gaps = 26/215 (12%)

Query: 423 FPSFSPKGDRIAFVEF-----PGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTS 475
            P++SP G ++A+V F     P +Y ++ +   R  +  +  N  +  + P    + ++S
Sbjct: 197 TPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSS 256

Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
                   S ++ ++     D+DG   + RLT     N  PS SPDG  IVF S R G  
Sbjct: 257 SR----DGSPDIYLM-----DLDG-KNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRP 306

Query: 536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG 595
            +Y+ D EG +   + RLT     ++   WSPDG+ I F S          +   +  +G
Sbjct: 307 QIYLYDLEGSQ---VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQ--WDIDKNDLA-SG 360

Query: 596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
             +R L    S      P ++P+G+ I+F+S  GG
Sbjct: 361 GKIRILT---STYLNESPSWAPNGRMIMFSSGQGG 392

Length = 425

>gnl|CDD|223893 COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

 Score = 87.5 bits (217), Expect = 3e-18
 Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 25/211 (11%)

Query: 375 PFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL-FRFDGSFPSFSPKGDRI 433
           P  SPD  ++ Y      S    G  ++   ++ +    + L F  +   P+FSP G ++
Sbjct: 198 PAWSPDGKKLAYV-----SFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKL 252

Query: 434 AFV----EFPGVYVVNSDGSNRRQV--YFKNAFSTVWDPVREAVVYTSGGPEFASESSEV 487
           AF       P +Y+++ DG N  ++   F    S  W P    +V+TS            
Sbjct: 253 AFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTS------DRGGRP 306

Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
            I   +++     S V RLT +G  N+ P  SPDG  IVF S+  G  ++   D   G  
Sbjct: 307 QIYLYDLEG----SQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362

Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578
               R+    + +   +W+P+G  I F+S +
Sbjct: 363 I---RILTSTYLNESPSWAPNGRMIMFSSGQ 390

Length = 425

>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat protein TolB

 Score = 84.2 bits (209), Expect = 4e-17
 Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 28/188 (14%)

Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
            + V D DG +  + +T + +    P+ SPDG+ + + S  +G   +Y+ D   G+    
Sbjct: 171 ELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---R 226

Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA 610
            ++   P  +    +SPDG  +A +  +D    G+ ++Y++  +G  L +L    + G  
Sbjct: 227 EKVASFPGMNGAPAFSPDGSKLAVSLSKD----GNPDIYVMDLDGKQLTRL----TNGPG 278

Query: 611 N--HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED 668
               P +SPDGKSI FTSD GG                +I+ +  DG + +RLT     +
Sbjct: 279 IDTEPSWSPDGKSIAFTSDRGG--------------SPQIYMMDADGGEARRLTFRGNYN 324

Query: 669 GTPAWGPR 676
            +P+W P 
Sbjct: 325 ASPSWSPD 332

Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 417

>gnl|CDD|235143 PRK03629, tolB, translocation protein TolB; Provisional

 Score = 79.0 bits (195), Expect = 2e-15
 Identities = 71/253 (28%), Positives = 117/253 (46%), Gaps = 43/253 (16%)

Query: 432 RIAFV------EFP-GVYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGGPEFAS 482
           RIA+V      +FP  + V + DG N+  V+       S  W P    + Y +    F S
Sbjct: 165 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FES 220

Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
             S + I ++    V  V++  R      +N  P+ SPDG  + F  ++TG  NLY+MD 
Sbjct: 221 GRSALVIQTLANGAVRQVASFPR------HNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 274

Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI 602
             G+   + ++T+G  ++T   W PD + +A+ SD+    +G  ++Y ++ NG   +++ 
Sbjct: 275 ASGQ---IRQVTDGRSNNTEPTWFPDSQNLAYTSDQ----AGRPQVYKVNINGGAPQRIT 327

Query: 603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
             GS  +      S DGK +V  S  GG          Q+     I K  L    ++ LT
Sbjct: 328 WEGSQNQ--DADVSSDGKFMVMVSSNGG---------QQH-----IAKQDLATGGVQVLT 371

Query: 663 QNSFEDGTPAWGP 675
            ++F D TP+  P
Sbjct: 372 -DTFLDETPSIAP 383

Length = 429

>gnl|CDD|179892 PRK04922, tolB, translocation protein TolB; Provisional

 Score = 77.4 bits (191), Expect = 6e-15
 Identities = 69/263 (26%), Positives = 108/263 (41%), Gaps = 50/263 (19%)

Query: 424 PSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY-FKN-----AFSTVWDPVREAVVY 473
           P++SP G ++A+V F      +YV +     R  V  F+      +FS   D  R A+  
Sbjct: 209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP--DGRRLALT- 265

Query: 474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG 533
                   S     +I  +++        + RLT +   +  P+ +PDGK I F S R G
Sbjct: 266 -------LSRDGNPEIYVMDLGSRQ----LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG 314

Query: 534 YKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592
              +Y + A GG      RLT +G ++    + SPDG+ IA        GSG      + 
Sbjct: 315 RPQIYRVAASGGSA---ERLTFQGNYNAR-ASVSPDGKKIAMVH-----GSGGQYRIAVM 365

Query: 593 PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK 652
              TG  + +  GS   +  P F+P+G  +++ +  GG               G +  + 
Sbjct: 366 DLSTGSVRTLTPGSLDES--PSFAPNGSMVLYATREGG--------------RGVLAAVS 409

Query: 653 LDGSDLKRLTQNSFEDGTPAWGP 675
            DG   +RL     E   PAW P
Sbjct: 410 TDGRVRQRLVSADGEVREPAWSP 432

Length = 433

>gnl|CDD|235351 PRK05137, tolB, translocation protein TolB; Provisional

 Score = 68.0 bits (167), Expect = 6e-12
 Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 38/188 (20%)

Query: 496 DVDGVSAVRRLTTNGKNNA-FPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL---H 551
           D DG  A  R  T+G +    P  SP+ + I + S   G   +Y++D E G+   +    
Sbjct: 188 DQDG--ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFP 245

Query: 552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN 611
            +T  P       +SPDG  +  +  +     G+ ++Y +        +L  S +   + 
Sbjct: 246 GMTFAP------RFSPDGRKVVMSLSQG----GNTDIYTMDLRSGTTTRLTDSPAIDTS- 294

Query: 612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG-- 669
            P +SPDG  IVF SD  G       +P        ++ +  DGS+ +R+   SF  G  
Sbjct: 295 -PSYSPDGSQIVFESDRSG-------SPQ-------LYVMNADGSNPRRI---SFGGGRY 336

Query: 670 -TPAWGPR 676
            TP W PR
Sbjct: 337 STPVWSPR 344

Length = 435

>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat protein TolB

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 70/316 (22%), Positives = 107/316 (33%), Gaps = 83/316 (26%)

Query: 258 DGTQRVKIVENGGW---PCWV-DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQ 313
           DG     I  +      P W  D   L +   S E     +Y   L  TG         +
Sbjct: 178 DGANPQTITRSREPILSPAWSPDGQKLAYV--SFESGKPEIYVQDL-ATG-------QRE 227

Query: 314 RVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHL 373
           +V         PA SP  +K +AV+  +  +    I + DL   +   LT      T   
Sbjct: 228 KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNP--DIYVMDLDGKQLTRLTNGPGIDT--- 281

Query: 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRI 433
            P  SPD   + +   RGGS                                        
Sbjct: 282 EPSWSPDGKSIAFTSDRGGS---------------------------------------- 301

Query: 434 AFVEFPGVYVVNSDGSNRRQVYFKNAF--STVWDPVREAVVYTSG-GPEFASESSEVDII 490
                P +Y++++DG   R++ F+  +  S  W P  + + +    G  F          
Sbjct: 302 -----PQIYMMDADGGEARRLTFRGNYNASPSWSPDGDLIAFVHREGGGFN--------- 347

Query: 491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL 550
            I V D+DG    R LT  G  +  PS +P+G+ I++ +TR G   L ++  +G      
Sbjct: 348 -IAVMDLDG-GGERVLTDTG-LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFR--- 401

Query: 551 HRLTEGPWSDTMCNWS 566
            RL  G        WS
Sbjct: 402 ARLPLGQGDVREPAWS 417

Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 417

>gnl|CDD|166839 PRK00178, tolB, translocation protein TolB; Provisional

 Score = 63.6 bits (155), Expect = 2e-10
 Identities = 54/202 (26%), Positives = 78/202 (38%), Gaps = 61/202 (30%)

Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
           P +SP G RIA+V F            +R   F                           
Sbjct: 204 PRWSPDGKRIAYVSF----------EQKRPRIF--------------------------- 226

Query: 484 SSEVDIISINVDDVDGVSAVRRLTTN--GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
                     V ++D  +  R   TN  G N A P+ SPDG  + F  ++ G   +Y+MD
Sbjct: 227 ----------VQNLD--TGRREQITNFEGLNGA-PAWSPDGSKLAFVLSKDGNPEIYVMD 273

Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
               +   L R+T  P  DT   W  DG  + F SDR     G  ++Y ++ NG    ++
Sbjct: 274 LASRQ---LSRVTNHPAIDTEPFWGKDGRTLYFTSDR----GGKPQIYKVNVNGGRAERV 326

Query: 602 IQSGSAGRANHPYFSPDGKSIV 623
              G+   A  P  S DGK++V
Sbjct: 327 TFVGNYN-AR-PRLSADGKTLV 346

Length = 430

>gnl|CDD|179329 PRK01742, tolB, translocation protein TolB; Provisional

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 24/154 (15%)

Query: 397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFP---GVYVVNSDGSNRRQ 453
           DG NQ ++     PL            P++SP G ++A+V F       VV+   S  R+
Sbjct: 192 DGFNQFIVNRSSQPLMS----------PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK 241

Query: 454 VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK 511
           V   F+            A  ++  G   A  SS+  +++I V   +G     +LT+   
Sbjct: 242 VVASFRGH--------NGAPAFSPDGSRLAFASSKDGVLNIYVMGANG-GTPSQLTSGAG 292

Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
           NN  PS SPDG+ I+F S R+G   +Y M A GG
Sbjct: 293 NNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG 326

Length = 429

>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat protein TolB

 Score = 59.6 bits (145), Expect = 3e-09
 Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 25/151 (16%)

Query: 526 VFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC-NWSPDGEWIAFASDRDNPGSG 584
           V +S +     L + D +G        +T       +   WSPDG+ +A+ S       G
Sbjct: 161 VSKSGKGRRYELQVADYDG---ANPQTITRSR-EPILSPAWSPDGQKLAYVSFES----G 212

Query: 585 SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP 644
             E+Y +    TG R+ + S   G    P FSPDG  +  +    G             P
Sbjct: 213 KPEIY-VQDLATGQREKVAS-FPGMNGAPAFSPDGSKLAVSLSKDG------------NP 258

Query: 645 YGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
             +I+ + LDG  L RLT     D  P+W P
Sbjct: 259 --DIYVMDLDGKQLTRLTNGPGIDTEPSWSP 287

Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 417

>gnl|CDD|166839 PRK00178, tolB, translocation protein TolB; Provisional

 Score = 57.8 bits (140), Expect = 1e-08
 Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 26/183 (14%)

Query: 481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM 540
           A   S     ++   D DG  AV  L +  +    P  SPDGK I + S       +++ 
Sbjct: 170 AERFSVNTRYTLQRSDYDGARAVTLLQSR-EPILSPRWSPDGKRIAYVSFEQKRPRIFVQ 228

Query: 541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD-NPGSGSFEMYLIHPNGTGLR 599
           + + G      ++T     +    WSPDG  +AF   +D NP     E+Y++      L 
Sbjct: 229 NLDTGR---REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNP-----EIYVMDLASRQLS 280

Query: 600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK 659
           ++    +      P++  DG+++ FTSD GG            +P  +I+K+ ++G   +
Sbjct: 281 RVTNHPAID--TEPFWGKDGRTLYFTSDRGG------------KP--QIYKVNVNGGRAE 324

Query: 660 RLT 662
           R+T
Sbjct: 325 RVT 327

Length = 430

>gnl|CDD|235143 PRK03629, tolB, translocation protein TolB; Provisional

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 31/185 (16%)

Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSPKG 430
           ++P  SPD S++ Y       T E G + L+++ + +       S  R +G+ P+FSP G
Sbjct: 202 MSPAWSPDGSKLAY------VTFESGRSALVIQTLANGAVRQVASFPRHNGA-PAFSPDG 254

Query: 431 DRIAFVEFP----GVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFA 481
            ++AF         +YV++      RQV    + +T   W P  + + YTS   G P+  
Sbjct: 255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQ-- 312

Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
                  +  +N++      A +R+T  G  N    VS DGK++V  S+  G +++   D
Sbjct: 313 -------VYKVNING----GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 361

Query: 542 AEGGE 546
              G 
Sbjct: 362 LATGG 366

Length = 429

>gnl|CDD|223893 COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 25/175 (14%)

Query: 378 SPDSSRVGYHKCRGGSTREDGNNQLLLENI-KSPLPDI-SLFRFDGSFPSFSPKGDRIAF 435
           SPD S++ +   R      DG+  + L ++    LP + + F  + S PS+SP G +I F
Sbjct: 246 SPDGSKLAFSSSR------DGSPDIYLMDLDGKNLPRLTNGFGINTS-PSWSPDGSKIVF 298

Query: 436 VE----FPGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGGPEFASESSEVDI 489
                  P +Y+ + +GS   ++ F      + VW P          G +   ESS    
Sbjct: 299 TSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSP---------DGDKIVFESSSGGQ 349

Query: 490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
             I+ +D+     +R LT+   N   PS +P+G+ I+F S + G   L ++  +G
Sbjct: 350 WDIDKNDLASGGKIRILTSTYLNE-SPSWAPNGRMIMFSSGQGGGSVLSLVSLDG 403

Length = 425

>gnl|CDD|179329 PRK01742, tolB, translocation protein TolB; Provisional

 Score = 56.4 bits (136), Expect = 3e-08
 Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 14/141 (9%)

Query: 492 INVDDVDGVSAVRRLTTNGKNNAF--PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG 549
           + V D DG +       N  +     P+ SPDG  + + S       L + D   G    
Sbjct: 186 VRVADYDGFNQ---FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242

Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR 609
           +         +    +SPDG  +AFAS +D    G   +Y++  NG    +L  +  AG 
Sbjct: 243 VASF---RGHNGAPAFSPDGSRLAFASSKD----GVLNIYVMGANGGTPSQL--TSGAGN 293

Query: 610 ANHPYFSPDGKSIVFTSDYGG 630
              P +SPDG+SI+FTSD  G
Sbjct: 294 NTEPSWSPDGQSILFTSDRSG 314

Length = 429

>gnl|CDD|235312 PRK04792, tolB, translocation protein TolB; Provisional

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 57/230 (24%), Positives = 94/230 (40%), Gaps = 71/230 (30%)

Query: 397 DG-NNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRR-QV 454
           DG N Q+LL   +SP P +S        P++SP G ++A+V F           NR+ ++
Sbjct: 206 DGYNEQMLL---RSPEPLMS--------PAWSPDGRKLAYVSF----------ENRKAEI 244

Query: 455 YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNA 514
           + ++ ++ V    RE V  TS                                  G N A
Sbjct: 245 FVQDIYTQV----REKV--TS--------------------------------FPGINGA 266

Query: 515 FPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574
            P  SPDGK +    ++ G   +Y++D        L R+T     DT  +W PDG+ + F
Sbjct: 267 -PRFSPDGKKLALVLSKDGQPEIYVVDIATKA---LTRITRHRAIDTEPSWHPDGKSLIF 322

Query: 575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
            S+R     G  ++Y ++     + +L   G          +PDG+S++ 
Sbjct: 323 TSER----GGKPQIYRVNLASGKVSRLTFEGEQNLGGS--ITPDGRSMIM 366

Length = 448

>gnl|CDD|235312 PRK04792, tolB, translocation protein TolB; Provisional

 Score = 55.8 bits (135), Expect = 4e-08
 Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 27/149 (18%)

Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
           P+ SPDG+ + + S       +++ D          ++T  P  +    +SPDG+ +A  
Sbjct: 223 PAWSPDGRKLAYVSFENRKAEIFVQDIYTQV---REKVTSFPGINGAPRFSPDGKKLALV 279

Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN--HPYFSPDGKSIVFTSDYGGISA 633
             +D    G  E+Y++      L ++    +  RA    P + PDGKS++FTS+ GG   
Sbjct: 280 LSKD----GQPEIYVVDIATKALTRI----TRHRAIDTEPSWHPDGKSLIFTSERGG--- 328

Query: 634 EPISTPHQYQPYGEIFKIKLDGSDLKRLT 662
                    +P  +I+++ L    + RLT
Sbjct: 329 ---------KP--QIYRVNLASGKVSRLT 346

Length = 448

>gnl|CDD|203719 pfam07676, PD40, WD40-like Beta Propeller Repeat

 Score = 49.1 bits (118), Expect = 4e-08
 Identities = 16/37 (43%), Positives = 22/37 (59%)

Query: 503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
           ++RLT    N   PS SPDGK + F S R G  ++Y+
Sbjct: 1   LKRLTNTPGNEGEPSWSPDGKRLAFTSDRGGSPDIYV 37

This family appears to be related to the pfam00400 repeat This This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16]. Length = 37

>gnl|CDD|235312 PRK04792, tolB, translocation protein TolB; Provisional

 Score = 52.3 bits (126), Expect = 6e-07
 Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 33/198 (16%)

Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGD 431
           ++P  SPD  ++ Y       + E+   ++ +++I + + + ++ F      P FSP G 
Sbjct: 221 MSPAWSPDGRKLAY------VSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGK 274

Query: 432 RIAFV----EFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFAS 482
           ++A V      P +YVV+       ++    A  T   W P  +++++TS   G P+   
Sbjct: 275 KLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQ--- 331

Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS-TRTGYKNLYIMD 541
                 I  +N+        V RLT  G+ N   S++PDG+ ++  + T   + N+   D
Sbjct: 332 ------IYRVNLAS----GKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKF-NIARQD 380

Query: 542 AEGGEGYGL--HRLTEGP 557
            E G    L   RL E P
Sbjct: 381 LETGAMQVLTSTRLDESP 398

Length = 448

>gnl|CDD|234889 PRK01029, tolB, translocation protein TolB; Provisional

 Score = 51.7 bits (124), Expect = 9e-07
 Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 17/196 (8%)

Query: 441 VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV 500
           ++ V+ DG N R +  +++ S     +    ++   G  +   S ++ +  I +  ++  
Sbjct: 167 LWSVDYDGQNLRPLTQEHSLS-----ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP 221

Query: 501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD---AEGGEGYGLHRLTEGP 557
           +  + L   G N   P+ SP  K + F S R G  +L+I       G  G     L E  
Sbjct: 222 AGKKILALQG-NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF 280

Query: 558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL--IHPNGTGLRKLIQSGSAGRANHPYF 615
            +    ++SPDG  + F S++D    G   +Y+  I P G   R L +         P +
Sbjct: 281 GTQGNPSFSPDGTRLVFVSNKD----GRPRIYIMQIDPEGQSPRLLTKKYRNSSC--PAW 334

Query: 616 SPDGKSIVFTSDYGGI 631
           SPDGK I F S   G+
Sbjct: 335 SPDGKKIAFCSVIKGV 350

Length = 428

>gnl|CDD|234889 PRK01029, tolB, translocation protein TolB; Provisional

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 36/199 (18%)

Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFS----TVWDPVR--EAVVYTSGG 477
           P+FSP+   +AF+         SD      + F  +FS     +  P R       T G 
Sbjct: 236 PTFSPRKKLLAFI---------SDRYGNPDL-FIQSFSLETGAIGKPRRLLNEAFGTQGN 285

Query: 478 PEFASESSEVDIIS----------INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527
           P F+ + + +  +S          + +D  +G S  R LT   +N++ P+ SPDGK I F
Sbjct: 286 PSFSPDGTRLVFVSNKDGRPRIYIMQIDP-EGQSP-RLLTKKYRNSSCPAWSPDGKKIAF 343

Query: 528 RSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFE 587
            S   G + + + D   G  Y   +LT  P +    +W+ D   + +++      S   E
Sbjct: 344 CSVIKGVRQICVYDLATGRDY---QLTTSPENKESPSWAIDSLHLVYSAG----NSNESE 396

Query: 588 MYLIHPNGTGLRKLIQSGS 606
           +YLI       RK I  GS
Sbjct: 397 LYLISLITKKTRK-IVIGS 414

Length = 428

>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

 Score = 49.8 bits (119), Expect = 4e-06
 Identities = 62/276 (22%), Positives = 91/276 (32%), Gaps = 36/276 (13%)

Query: 360 IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRF 419
            +  R ++          SPD S + +      ST      QL L ++      I+   F
Sbjct: 50  GKTVRLLTFGGGVSELRWSPDGSVLAFV-----STDGGRVAQLYLVDVGG---LITKTAF 101

Query: 420 DGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPE 479
             S   +SP GDRIAF+          DG       F +     +D         S    
Sbjct: 102 GVSDARWSPDGDRIAFL--TAEGASKRDG---GDHLFVDRLPVWFDGRGGER---SDLYV 153

Query: 480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI 539
              ES  + +   N+D V          T+G      S+  D              NLY+
Sbjct: 154 VDIESKLIKLGLGNLDVVSFA-------TDGDGRLVASIRLDD------DADPWVTNLYV 200

Query: 540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG--SGSFEMYLIHPNGTG 597
           +    GE   L  LT G  S +   +  DG+ IA      + G   G F   L+      
Sbjct: 201 LIEGNGE---LESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFI-LLLDGELGE 256

Query: 598 LRKLIQSGSAGRANHP-YFSPDGKSIVFTSDYGGIS 632
           +   + SG   R         DG  ++F +  GG S
Sbjct: 257 VDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDGGGS 292

Length = 620

>gnl|CDD|235212 PRK04043, tolB, translocation protein TolB; Provisional

 Score = 48.5 bits (116), Expect = 8e-06
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 10/115 (8%)

Query: 521 DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS-DRD 579
           D K IVF S R GY N+++     G    + ++     +++    S    +I ++S + +
Sbjct: 287 DDKRIVFVSDRLGYPNIFMKKLNSG---SVEQVVFHGKNNSSV--STYKNYIVYSSRETN 341

Query: 580 NP-GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633
           N  G  +F +YLI  N   +R+L  +G       P FS DG SI+F    G  SA
Sbjct: 342 NEFGKNTFNLYLISTNSDYIRRLTANGVN---QFPRFSSDGGSIMFIKYLGNQSA 393

Length = 419

>gnl|CDD|166839 PRK00178, tolB, translocation protein TolB; Provisional

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 33/220 (15%)

Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGD 431
           L+P  SPD  R+ Y       + E    ++ ++N+ +   + I+ F      P++SP G 
Sbjct: 202 LSPRWSPDGKRIAY------VSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGS 255

Query: 432 RIAFV----EFPGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTS---GGPEFAS 482
           ++AFV      P +YV++       +V    A  T   W      + +TS   G P+   
Sbjct: 256 KLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQ--- 312

Query: 483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA 542
                 I  +NV          R+T  G  NA P +S DGK +V    + G  ++   D 
Sbjct: 313 ------IYKVNV----NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDL 362

Query: 543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG 582
           + G    +  LT+    D   + +P+G  + +A+ +   G
Sbjct: 363 QRGS---VRILTD-TSLDESPSVAPNGTMLIYATRQQGRG 398

Length = 430

>gnl|CDD|235212 PRK04043, tolB, translocation protein TolB; Provisional

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 21/106 (19%)

Query: 432 RIAFVE----FPGVYVVNSDGSNRRQVYF----KNAFSTVWDPVREAVVYTS--GGPEFA 481
           RI FV     +P +++   +  +  QV F     ++ ST  +     +VY+S     EF 
Sbjct: 290 RIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKN----YIVYSSRETNNEFG 345

Query: 482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527
             +  + +IS N D       +RRLT NG N  FP  S DG  I+F
Sbjct: 346 KNTFNLYLISTNSD------YIRRLTANGVNQ-FPRFSSDGGSIMF 384

Length = 419

>gnl|CDD|203719 pfam07676, PD40, WD40-like Beta Propeller Repeat

 Score = 40.2 bits (95), Expect = 6e-05
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)

Query: 550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY 589
           L RLT  P ++   +WSPDG+ +AF SDR     GS ++Y
Sbjct: 1   LKRLTNTPGNEGEPSWSPDGKRLAFTSDRG----GSPDIY 36

This family appears to be related to the pfam00400 repeat This This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16]. Length = 37

>gnl|CDD|179329 PRK01742, tolB, translocation protein TolB; Provisional

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 28/115 (24%)

Query: 565 WSPDGEWIAFASDRDNPGSGSFE----MYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK 620
           WSPDG  +A+ S         FE      ++H   +G RK++ S   G    P FSPDG 
Sbjct: 211 WSPDGSKLAYVS---------FENKKSQLVVHDLRSGARKVVAS-FRGHNGAPAFSPDGS 260

Query: 621 SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
            + F S   G+                I+ +  +G    +LT  +  +  P+W P
Sbjct: 261 RLAFASSKDGVL--------------NIYVMGANGGTPSQLTSGAGNNTEPSWSP 301

Length = 429

>gnl|CDD|227282 COG4946, COG4946, Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 504 RRLTTNGKNNAFPSVSPDGKWIVF-RSTRTGYKN---LYIMDAEGGEGYGLHRLT--EGP 557
            R+T+       P  SPDG+ + F R           LY++ +E GE     R+T     
Sbjct: 72  LRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGE---AKRITYFGRR 128

Query: 558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
           ++  +  W PDGE I   +D   P S   E+Y ++ +G     L
Sbjct: 129 FTR-VAGWIPDGEIIVS-TDFHTPFSQWTELYKVNVDGIKTEPL 170

Length = 668

>gnl|CDD|235312 PRK04792, tolB, translocation protein TolB; Provisional

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 20/111 (18%)

Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF 624
           WSPDG  +A+ S  +N  +  F   +     T +R+ + S   G    P FSPDGK +  
Sbjct: 225 WSPDGRKLAYVS-FENRKAEIFVQDIY----TQVREKVTS-FPGINGAPRFSPDGKKLAL 278

Query: 625 TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
                G            QP  EI+ + +    L R+T++   D  P+W P
Sbjct: 279 VLSKDG------------QP--EIYVVDIATKALTRITRHRAIDTEPSWHP 315

Length = 448

>gnl|CDD|203719 pfam07676, PD40, WD40-like Beta Propeller Repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
           L++L  +   G    P +SPDGK + FTSD GG
Sbjct: 1   LKRLTNTP--GNEGEPSWSPDGKRLAFTSDRGG 31

This family appears to be related to the pfam00400 repeat This This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16]. Length = 37

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	721
COG4946	668	Uncharacterized protein related to the periplasmic	100.0
COG4946	668	Uncharacterized protein related to the periplasmic	99.95
PRK01029	428	tolB translocation protein TolB; Provisional	99.95
PRK03629	429	tolB translocation protein TolB; Provisional	99.95
PRK05137	435	tolB translocation protein TolB; Provisional	99.95
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.94
PRK02889	427	tolB translocation protein TolB; Provisional	99.94
PRK04922	433	tolB translocation protein TolB; Provisional	99.94
PRK04792	448	tolB translocation protein TolB; Provisional	99.94
PRK01029	428	tolB translocation protein TolB; Provisional	99.93
PRK04043	419	tolB translocation protein TolB; Provisional	99.93
PRK00178	430	tolB translocation protein TolB; Provisional	99.93
PRK01742	429	tolB translocation protein TolB; Provisional	99.92
PRK05137	435	tolB translocation protein TolB; Provisional	99.92
PRK03629	429	tolB translocation protein TolB; Provisional	99.91
PRK04922	433	tolB translocation protein TolB; Provisional	99.91
PRK02889	427	tolB translocation protein TolB; Provisional	99.91
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.91
PRK04792	448	tolB translocation protein TolB; Provisional	99.91
PRK04043	419	tolB translocation protein TolB; Provisional	99.9
PRK00178	430	tolB translocation protein TolB; Provisional	99.9
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.9
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.89
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.89
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.89
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.87
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	99.86
PRK01742	429	tolB translocation protein TolB; Provisional	99.86
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.82
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.81
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.81
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.79
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.78
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	99.78
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	99.78
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.77
KOG0286	343	consensus G-protein beta subunit [General function	99.76
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.75
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	99.74
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.72
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	99.72
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.72
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.7
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.7
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.69
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.69
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	99.69
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.69
KOG0286	343	consensus G-protein beta subunit [General function	99.69
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.68
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.67
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.67
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.67
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.66
KOG2096	420	consensus WD40 repeat protein [General function pr	99.65
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.65
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.64
KOG0266	456	consensus WD40 repeat-containing protein [General	99.64
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.63
PRK11028	330	6-phosphogluconolactonase; Provisional	99.63
PRK11028	330	6-phosphogluconolactonase; Provisional	99.62
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.62
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.62
KOG0266	456	consensus WD40 repeat-containing protein [General	99.62
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.61
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.59
KOG2048	691	consensus WD40 repeat protein [General function pr	99.58
KOG0296	399	consensus Angio-associated migratory cell protein	99.58
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.58
KOG0296	399	consensus Angio-associated migratory cell protein	99.58
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.57
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.56
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.55
KOG2055	514	consensus WD40 repeat protein [General function pr	99.55
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.54
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.54
PLN00181	793	protein SPA1-RELATED; Provisional	99.52
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.52
KOG2055	514	consensus WD40 repeat protein [General function pr	99.51
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.5
KOG2314	698	consensus Translation initiation factor 3, subunit	99.49
KOG0645	312	consensus WD40 repeat protein [General function pr	99.48
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.48
KOG1539	910	consensus WD repeat protein [General function pred	99.48
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.48
KOG2048	691	consensus WD40 repeat protein [General function pr	99.47
PTZ00421	493	coronin; Provisional	99.46
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.46
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.46
KOG2096	420	consensus WD40 repeat protein [General function pr	99.46
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.46
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.45
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.45
PTZ00420	568	coronin; Provisional	99.44
PTZ00421	493	coronin; Provisional	99.43
KOG0645	312	consensus WD40 repeat protein [General function pr	99.43
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.42
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.42
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.41
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.41
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.41
PLN00181	793	protein SPA1-RELATED; Provisional	99.41
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.41
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.38
KOG0643	327	consensus Translation initiation factor 3, subunit	99.38
KOG1274	933	consensus WD40 repeat protein [General function pr	99.38
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.38
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.38
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.37
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.36
KOG2314	698	consensus Translation initiation factor 3, subunit	99.35
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.34
PTZ00420	568	coronin; Provisional	99.34
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.34
KOG1539	910	consensus WD repeat protein [General function pred	99.34
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.33
KOG1274	933	consensus WD40 repeat protein [General function pr	99.32
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.32
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.3
KOG0639	705	consensus Transducin-like enhancer of split protei	99.29
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.28
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.27
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.27
KOG0643	327	consensus Translation initiation factor 3, subunit	99.27
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.26
KOG0639	705	consensus Transducin-like enhancer of split protei	99.26
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.25
KOG0289	506	consensus mRNA splicing factor [General function p	99.25
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	99.25
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.24
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.23
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.22
KOG1273	405	consensus WD40 repeat protein [General function pr	99.21
KOG1273	405	consensus WD40 repeat protein [General function pr	99.2
KOG2315	566	consensus Predicted translation initiation factor	99.17
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.16
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.16
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.13
KOG2315	566	consensus Predicted translation initiation factor	99.13
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	99.13
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.11
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.11
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.11
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.1
KOG0641	350	consensus WD40 repeat protein [General function pr	99.1
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.09
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.08
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.08
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.06
KOG2139	445	consensus WD40 repeat protein [General function pr	99.05
KOG0289	506	consensus mRNA splicing factor [General function p	99.04
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.03
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.03
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.03
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.01
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.0
PRK10115	686	protease 2; Provisional	98.97
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.96
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	98.95
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	98.95
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.94
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.94
KOG2139	445	consensus WD40 repeat protein [General function pr	98.94
PRK13616	591	lipoprotein LpqB; Provisional	98.94
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.93
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	98.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	98.93
PRK10115	686	protease 2; Provisional	98.89
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.87
KOG0646	476	consensus WD40 repeat protein [General function pr	98.87
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	98.86
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	98.85
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.84
KOG0641	350	consensus WD40 repeat protein [General function pr	98.84
KOG4283	397	consensus Transcription-coupled repair protein CSA	98.8
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.79
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	98.79
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	98.77
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.76
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.75
PRK13616	591	lipoprotein LpqB; Provisional	98.74
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.74
KOG0647	347	consensus mRNA export protein (contains WD40 repea	98.74
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	98.74
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.73
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.72
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.72
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.72
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	98.71
KOG0647	347	consensus mRNA export protein (contains WD40 repea	98.7
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	98.7
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.68
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	98.68
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.67
KOG0308	735	consensus Conserved WD40 repeat-containing protein	98.67
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.66
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	98.66
KOG0646	476	consensus WD40 repeat protein [General function pr	98.65
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.64
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.63
KOG0269	839	consensus WD40 repeat-containing protein [Function	98.62
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.61
KOG4328	498	consensus WD40 protein [Function unknown]	98.59
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.59
KOG0294	362	consensus WD40 repeat-containing protein [Function	98.59
KOG4328	498	consensus WD40 protein [Function unknown]	98.58
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	98.57
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	98.57
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.55
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.54
PRK02888	635	nitrous-oxide reductase; Validated	98.53
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.53
KOG1963	792	consensus WD40 repeat protein [General function pr	98.52
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	98.52
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	98.52
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.5
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	98.49
PRK02888	635	nitrous-oxide reductase; Validated	98.48
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.48
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	98.47
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.47
KOG4283	397	consensus Transcription-coupled repair protein CSA	98.46
KOG0308	735	consensus Conserved WD40 repeat-containing protein	98.45
KOG0300	481	consensus WD40 repeat-containing protein [Function	98.44
COG3391	381	Uncharacterized conserved protein [Function unknow	98.44
KOG1963	792	consensus WD40 repeat protein [General function pr	98.43
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	98.42
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.42
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.41
COG1770	682	PtrB Protease II [Amino acid transport and metabol	98.38
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	98.34
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.32
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.31
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.31
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.31
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	98.3
KOG0269	839	consensus WD40 repeat-containing protein [Function	98.27
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.26
KOG0267	825	consensus Microtubule severing protein katanin p80	98.26
KOG0302	440	consensus Ribosome Assembly protein [General funct	98.26
KOG0300	481	consensus WD40 repeat-containing protein [Function	98.24
KOG2321	703	consensus WD40 repeat protein [General function pr	98.23
KOG0301	745	consensus Phospholipase A2-activating protein (con	98.22
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.2
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	98.19
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.15
KOG2321	703	consensus WD40 repeat protein [General function pr	98.14
KOG0302	440	consensus Ribosome Assembly protein [General funct	98.11
COG1770	682	PtrB Protease II [Amino acid transport and metabol	98.11
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.11
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.11
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	98.09
COG2319	466	FOG: WD40 repeat [General function prediction only	98.08
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.07
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	98.07
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	98.04
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	98.03
COG3391	381	Uncharacterized conserved protein [Function unknow	98.02
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.0
COG2319	466	FOG: WD40 repeat [General function prediction only	97.99
KOG0301	745	consensus Phospholipase A2-activating protein (con	97.92
KOG0267	825	consensus Microtubule severing protein katanin p80	97.91
KOG2111	346	consensus Uncharacterized conserved protein, conta	97.91
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	97.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	97.9
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.89
KOG0649	325	consensus WD40 repeat protein [General function pr	97.88
KOG3881	412	consensus Uncharacterized conserved protein [Funct	97.87
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.85
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	97.8
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	97.74
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	97.67
KOG0649	325	consensus WD40 repeat protein [General function pr	97.66
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.66
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	97.64
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	97.6
KOG0270	463	consensus WD40 repeat-containing protein [Function	97.59
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.59
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.53
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	97.5
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.48
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	97.46
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	97.45
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	97.41
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.4
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	97.39
KOG4547	541	consensus WD40 repeat-containing protein [General	97.34
KOG3881	412	consensus Uncharacterized conserved protein [Funct	97.28
KOG4547	541	consensus WD40 repeat-containing protein [General	97.26
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	97.19
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	97.14
KOG4227	609	consensus WD40 repeat protein [General function pr	97.05
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	97.04
KOG0644	1113	consensus Uncharacterized conserved protein, conta	97.03
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.03
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	97.01
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.98
KOG1188	376	consensus WD40 repeat protein [General function pr	96.93
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.92
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	96.92
KOG1334	559	consensus WD40 repeat protein [General function pr	96.91
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.9
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.88
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.84
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	96.82
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.8
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.78
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.75
KOG1188	376	consensus WD40 repeat protein [General function pr	96.73
KOG4532	344	consensus WD40-like repeat containing protein [Gen	96.7
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.69
KOG4227	609	consensus WD40 repeat protein [General function pr	96.67
PRK13614	573	lipoprotein LpqB; Provisional	96.65
PRK13613	599	lipoprotein LpqB; Provisional	96.63
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.58
KOG1310	758	consensus WD40 repeat protein [General function pr	96.56
KOG1912	1062	consensus WD40 repeat protein [General function pr	96.49
KOG1912	1062	consensus WD40 repeat protein [General function pr	96.47
KOG0644	1113	consensus Uncharacterized conserved protein, conta	96.45
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	96.42
PRK13615	557	lipoprotein LpqB; Provisional	96.41
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	96.28
KOG2100	755	consensus Dipeptidyl aminopeptidase [Posttranslati	96.23
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.21
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.21
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.17
COG1505	648	Serine proteases of the peptidase family S9A [Amin	96.14
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	96.07
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.95
PRK13613	599	lipoprotein LpqB; Provisional	95.81
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.65
KOG2100	755	consensus Dipeptidyl aminopeptidase [Posttranslati	95.53
KOG3621	726	consensus WD40 repeat-containing protein [General	95.46
KOG1310	758	consensus WD40 repeat protein [General function pr	95.45
PRK13614	573	lipoprotein LpqB; Provisional	95.45
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.39
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.38
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	95.36
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	95.36
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	95.35
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.31
PF13449	326	Phytase-like: Esterase-like activity of phytase	95.27
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	95.15
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.13
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	94.92
PRK13615	557	lipoprotein LpqB; Provisional	94.9
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	94.82
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.61
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.38
KOG3621	726	consensus WD40 repeat-containing protein [General	94.33
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	94.28
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	94.07
KOG1214	1289	consensus Nidogen and related basement membrane pr	94.01
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	93.83
KOG0280	339	consensus Uncharacterized conserved protein [Amino	93.47
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	93.43
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	93.42
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	93.35
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	93.33
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	93.18
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	93.02
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	93.01
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.87
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.8
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	92.59
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.42
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.22
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	92.2
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.07
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	91.9
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	91.76
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	91.7
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	91.64
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	91.4
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	91.38
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	90.69
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	90.67
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	90.54
PHA03098	534	kelch-like protein; Provisional	90.44
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	90.12
KOG2395	644	consensus Protein involved in vacuole import and d	90.0
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	89.86
KOG1230	521	consensus Protein containing repeated kelch motifs	89.63
KOG1409	404	consensus Uncharacterized conserved protein, conta	88.54
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	88.19
KOG1230	521	consensus Protein containing repeated kelch motifs	87.95
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	87.78
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	87.66
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	87.63
KOG1214	1289	consensus Nidogen and related basement membrane pr	87.55
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	87.48
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	86.85
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	86.8
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	86.58
KOG2377	657	consensus Uncharacterized conserved protein [Funct	86.56
KOG1334	559	consensus WD40 repeat protein [General function pr	85.7
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	85.36
KOG2281	867	consensus Dipeptidyl aminopeptidases/acylaminoacyl	85.31
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	85.15
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	84.92
KOG0280	339	consensus Uncharacterized conserved protein [Amino	84.81
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	84.64
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	82.93
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	82.12
KOG2377	657	consensus Uncharacterized conserved protein [Funct	81.69
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	81.58
PF15525	200	DUF4652: Domain of unknown function (DUF4652)	81.49
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	81.06
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	80.92
COG5167	776	VID27 Protein involved in vacuole import and degra	80.64

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=100.00  E-value=5.4e-34  Score=278.91  Aligned_cols=452  Identities=20%  Similarity=0.262  Sum_probs=332.6

Q ss_pred             CCCCceEEEEeecCCCcceeEEeccCCCCCCCCceeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCC
Q 004971           26 SSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPP  105 (721)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (721)
                      ++.++.|+|+      +.+|+|.+++..    |.++|||.+-+++.+|+|||||+                         
T Consensus        47 DI~GD~IiFt------~~DdlWe~slk~----g~~~ritS~lGVvnn~kf~pdGr-------------------------   91 (668)
T COG4946          47 DIYGDRIIFT------CCDDLWEYSLKD----GKPLRITSGLGVVNNPKFSPDGR-------------------------   91 (668)
T ss_pred             cccCcEEEEE------echHHHHhhhcc----CCeeEEecccceeccccCCCCCc-------------------------
Confidence            6789999999      889999999988    99999999999999999999999                         


Q ss_pred             CceEEEEeeec----CCceeEEeeeecCcccccccchhhh-ccccccccceeeccccccccCCceeeeeecccccCCEEE
Q 004971          106 PLQLIYVTERN----GTSNIYYDAVYYDTRRNTRSRTALE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLI  180 (721)
Q Consensus       106 ~~~~~~~~~~~----g~~~v~~~~~~~g~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~  180 (721)
                        +|||+.-.-    ...+||+++..+|+    ++|  +| .+.  .-++|.           ||     .|  ||+.|+
T Consensus        92 --kvaf~rv~~~ss~~taDly~v~~e~Ge----~kR--iTyfGr--~fT~Va-----------G~-----~~--dg~iiV  143 (668)
T COG4946          92 --KVAFSRVMLGSSLQTADLYVVPSEDGE----AKR--ITYFGR--RFTRVA-----------GW-----IP--DGEIIV  143 (668)
T ss_pred             --EEEEEEEEecCCCccccEEEEeCCCCc----EEE--EEEecc--ccceee-----------cc-----CC--CCCEEE
Confidence              999953222    25679999998998    899  99 753  456666           99     99  999777


Q ss_pred             EEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEec--CCCCCCcccceeeeeEEEEEcCC
Q 004971          181 YVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASY--GNKGWDGEVEMLSTDIYIFLTRD  258 (721)
Q Consensus       181 ~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~--~~~~w~~~~~~~~~~i~~~d~~~  258 (721)
                      ++... .+   ...|..||.++.++....+|.-.+..+.   +-.|| .++...+  +-+.||+|.+++.+.||+-...+
T Consensus       144 ~TD~~-tP---F~q~~~lYkv~~dg~~~e~LnlGpathi---v~~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g  215 (668)
T COG4946         144 STDFH-TP---FSQWTELYKVNVDGIKTEPLNLGPATHI---VIKDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGG  215 (668)
T ss_pred             EeccC-CC---cccceeeeEEccCCceeeeccCCceeeE---EEeCC-EEEEccCcccCcccccccCCccceEEEEecCC
Confidence            65333 22   2236799999999998888833332222   23477 4444333  55799999999999999877644


Q ss_pred             CceeEEEeccC--CcceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCC-CCcccCceeecCCCCEE
Q 004971          259 GTQRVKIVENG--GWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPP-GLHAFTPATSPGNNKFI  335 (721)
Q Consensus       259 g~~~~l~~~~~--~~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sp~dG~~l  335 (721)
                      ...+++..-.+  .+|....+ |+||  +++.+|..+||.++..+.        ..++.|.. ....+++  +. ||++|
T Consensus       216 ~tFeK~vdl~~~vS~PmIV~~-RvYF--lsD~eG~GnlYSvdldGk--------DlrrHTnFtdYY~R~~--ns-DGkrI  281 (668)
T COG4946         216 KTFEKFVDLDGNVSSPMIVGE-RVYF--LSDHEGVGNLYSVDLDGK--------DLRRHTNFTDYYPRNA--NS-DGKRI  281 (668)
T ss_pred             cceeeeeecCCCcCCceEEcc-eEEE--EecccCccceEEeccCCc--------hhhhcCCchhcccccc--CC-CCcEE
Confidence            46666664333  36777766 9999  788899999997766552        56666654 3334443  44 99999


Q ss_pred             EEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEE-cCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcc
Q 004971          336 AVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI-SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI  414 (721)
Q Consensus       336 a~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~-Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  414 (721)
                      +|.  ..|    .||++|.++.+.+.+...        -+.. +++...+                   +.    +.+- 
T Consensus       282 vFq--~~G----dIylydP~td~lekldI~--------lpl~rk~k~~k~-------------------~~----psky-  323 (668)
T COG4946         282 VFQ--NAG----DIYLYDPETDSLEKLDIG--------LPLDRKKKQPKF-------------------VN----PSKY-  323 (668)
T ss_pred             EEe--cCC----cEEEeCCCcCcceeeecC--------Cccccccccccc-------------------cC----HHHh-
Confidence            994  333    399999998876655321        0110 1111000                   00    0000 


Q ss_pred             eecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEE
Q 004971          415 SLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN  493 (721)
Q Consensus       415 ~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~  493 (721)
                            ....+.+ +|.++++++.++.++++...+-..++. .+.+.--.+.-|++.++....      +...+.||..+
T Consensus       324 ------ledfa~~-~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~------dgD~l~iyd~~  390 (668)
T COG4946         324 ------LEDFAVV-NGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTN------DGDKLGIYDKD  390 (668)
T ss_pred             ------hhhhccC-CCcEEEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEecc------CCceEEEEecC
Confidence                  0011222 488999999999999999888777776 566777778888887777652      33467776654


Q ss_pred             ccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCC-cCceeeEEccCCCEE
Q 004971          494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP-WSDTMCNWSPDGEWI  572 (721)
Q Consensus       494 ~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~-~~~~~~~~SpDG~~l  572 (721)
                      .      ++.+++...-+.+..+..+||||+++++.+   ..+||++|+++|.   ++.+.... .-+..+.|+|++++|
T Consensus       391 ~------~e~kr~e~~lg~I~av~vs~dGK~~vvaNd---r~el~vididngn---v~~idkS~~~lItdf~~~~nsr~i  458 (668)
T COG4946         391 G------GEVKRIEKDLGNIEAVKVSPDGKKVVVAND---RFELWVIDIDNGN---VRLIDKSEYGLITDFDWHPNSRWI  458 (668)
T ss_pred             C------ceEEEeeCCccceEEEEEcCCCcEEEEEcC---ceEEEEEEecCCC---eeEecccccceeEEEEEcCCceeE
Confidence            3      266777777788999999999999999887   7899999999999   56665443 346789999999999


Q ss_pred             EEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          573 AFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      ||+...+   --.+.|.++|+++++...+|.  ......+|+|.|||++|+|.+.+.-
T Consensus       459 AYafP~g---y~tq~Iklydm~~~Kiy~vTT--~ta~DfsPaFD~d~ryLYfLs~RsL  511 (668)
T COG4946         459 AYAFPEG---YYTQSIKLYDMDGGKIYDVTT--PTAYDFSPAFDPDGRYLYFLSARSL  511 (668)
T ss_pred             EEecCcc---eeeeeEEEEecCCCeEEEecC--CcccccCcccCCCCcEEEEEecccc
Confidence            9998764   345789999999999988886  3567789999999999999999873

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.95  E-value=1.4e-24  Score=213.23  Aligned_cols=431  Identities=17%  Similarity=0.253  Sum_probs=299.7

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeee
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTD  250 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~  250 (721)
                      .|.|-|..|+|++++           .||.+++..|+++++|.+-+....|.|||||+++||..-    |.+. ..+..+
T Consensus        45 ~PDI~GD~IiFt~~D-----------dlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv----~~~s-s~~taD  108 (668)
T COG4946          45 NPDIYGDRIIFTCCD-----------DLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRV----MLGS-SLQTAD  108 (668)
T ss_pred             CCcccCcEEEEEech-----------HHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEE----EecC-CCcccc
Confidence            685559999999988           899999999999999999999999999999999999532    1111 113589


Q ss_pred             EEEEEcCCCceeEEEeccCC---cceeccCCeEEEEeccC--CCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCc
Q 004971          251 IYIFLTRDGTQRVKIVENGG---WPCWVDESTLFFHRKSE--EDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTP  325 (721)
Q Consensus       251 i~~~d~~~g~~~~l~~~~~~---~~~ws~dg~l~~~~~~~--~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (721)
                      ||+++.++|+.++++.-...   ...|+|||+++.....-  -.....+|++...+.        ....+.-..  +.++
T Consensus       109 ly~v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~--------~~e~LnlGp--athi  178 (668)
T COG4946         109 LYVVPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGI--------KTEPLNLGP--ATHI  178 (668)
T ss_pred             EEEEeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCc--------eeeeccCCc--eeeE
Confidence            99999999999999855322   45899999977632111  123457887766653        233332221  1233


Q ss_pred             eeecCCCCEEEEEEe---------cCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCC
Q 004971          326 ATSPGNNKFIAVATR---------RPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRE  396 (721)
Q Consensus       326 ~~sp~dG~~la~~~~---------~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~  396 (721)
                      .+ . || .++...+         .+|+..+.||+=.-.....+++...   ..++.+|.+-  |.+++|.+...+.   
T Consensus       179 v~-~-dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl---~~~vS~PmIV--~~RvYFlsD~eG~---  247 (668)
T COG4946         179 VI-K-DG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDL---DGNVSSPMIV--GERVYFLSDHEGV---  247 (668)
T ss_pred             EE-e-CC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeec---CCCcCCceEE--cceEEEEecccCc---
Confidence            33 3 66 4554432         2356666777654332234444433   5666677776  7899998876653   


Q ss_pred             CCcceeEEEeccCCCCc-ceecccCCCC-ceeCcCCCEEEEEeCCcEEEEECCCCceEEEeec-C----ce---------
Q 004971          397 DGNNQLLLENIKSPLPD-ISLFRFDGSF-PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFK-N----AF---------  460 (721)
Q Consensus       397 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~~~-~----~~---------  460 (721)
                         .++|..++.+...+ -+.+  .... -..+.||++|+|...+.||++|.++...+.|.-+ .    ..         
T Consensus       248 ---GnlYSvdldGkDlrrHTnF--tdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~psk  322 (668)
T COG4946         248 ---GNLYSVDLDGKDLRRHTNF--TDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSK  322 (668)
T ss_pred             ---cceEEeccCCchhhhcCCc--hhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHH
Confidence               57888888765211 1111  0111 1457899999999999999999998877666511 0    00         


Q ss_pred             -eeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEE
Q 004971          461 -STVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY  538 (721)
Q Consensus       461 -~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~  538 (721)
                       .-.|++ +|.++++++++        +..|.+..  .+    -..++... +.+..-.++-|++.++.....  ...|-
T Consensus       323 yledfa~~~Gd~ia~VSRG--------kaFi~~~~--~~----~~iqv~~~-~~VrY~r~~~~~e~~vigt~d--gD~l~  385 (668)
T COG4946         323 YLEDFAVVNGDYIALVSRG--------KAFIMRPW--DG----YSIQVGKK-GGVRYRRIQVDPEGDVIGTND--GDKLG  385 (668)
T ss_pred             hhhhhccCCCcEEEEEecC--------cEEEECCC--CC----eeEEcCCC-CceEEEEEccCCcceEEeccC--CceEE
Confidence             011333 78899998853        33333322  21    33333333 346677788888877776652  33788


Q ss_pred             EEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCC
Q 004971          539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD  618 (721)
Q Consensus       539 ~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpD  618 (721)
                      ++|..+++   ++.+..+-+.+..+..||||+.++.+..+.       +|+++|+++|.++.+-.. ..+.+..+.|+|+
T Consensus       386 iyd~~~~e---~kr~e~~lg~I~av~vs~dGK~~vvaNdr~-------el~vididngnv~~idkS-~~~lItdf~~~~n  454 (668)
T COG4946         386 IYDKDGGE---VKRIEKDLGNIEAVKVSPDGKKVVVANDRF-------ELWVIDIDNGNVRLIDKS-EYGLITDFDWHPN  454 (668)
T ss_pred             EEecCCce---EEEeeCCccceEEEEEcCCCcEEEEEcCce-------EEEEEEecCCCeeEeccc-ccceeEEEEEcCC
Confidence            99999998   788888778888999999999999888774       999999999998877654 5677889999999


Q ss_pred             CCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC-----cCCccccc
Q 004971          619 GKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR-----FIRPVDVE  684 (721)
Q Consensus       619 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~-----~l~~~~~~  684 (721)
                      +++|+++-..+-.             .++|.++|+++++.-.+|....-+.+|+|.|+     +|+..+++
T Consensus       455 sr~iAYafP~gy~-------------tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLd  512 (668)
T COG4946         455 SRWIAYAFPEGYY-------------TQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLD  512 (668)
T ss_pred             ceeEEEecCccee-------------eeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccccC
Confidence            9999997654422             14699999999999999987778899999995     56666665

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.95  E-value=2.7e-25  Score=236.92  Aligned_cols=267  Identities=20%  Similarity=0.328  Sum_probs=196.7

Q ss_pred             CCEEEEEEeeCCCCCCCCcceeEEEeccCC-CCcceecccCCCCceeCcCCCEE--EEE----eCCcEEEEECCCCceEE
Q 004971          381 SSRVGYHKCRGGSTREDGNNQLLLENIKSP-LPDISLFRFDGSFPSFSPKGDRI--AFV----EFPGVYVVNSDGSNRRQ  453 (721)
Q Consensus       381 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~SpDG~~l--a~~----~~~~l~v~d~~~g~~~~  453 (721)
                      +++|+|+.............+||+.+.++. ...++........|.|||||+.+  +|+    +..+||++++++++.++
T Consensus       146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~  225 (428)
T PRK01029        146 SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK  225 (428)
T ss_pred             cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE
Confidence            678888766544221111257888888765 33444444445679999999874  445    25689999999999888


Q ss_pred             Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEE--EEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEE
Q 004971          454 VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS--INVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFR  528 (721)
Q Consensus       454 l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~  528 (721)
                      +.  .+....+.|||||++|+|++..      .+...+|.  ++...+ ..+..++++... .....++|||||++|+|.
T Consensus       226 lt~~~g~~~~p~wSPDG~~Laf~s~~------~g~~di~~~~~~~~~g-~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~  298 (428)
T PRK01029        226 ILALQGNQLMPTFSPRKKLLAFISDR------YGNPDLFIQSFSLETG-AIGKPRRLLNEAFGTQGNPSFSPDGTRLVFV  298 (428)
T ss_pred             eecCCCCccceEECCCCCEEEEEECC------CCCcceeEEEeecccC-CCCcceEeecCCCCCcCCeEECCCCCEEEEE
Confidence            87  5667789999999999999742      22223333  333321 012456676543 345679999999999999


Q ss_pred             EeeCCceeEEEEECCC--CcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC
Q 004971          529 STRTGYKNLYIMDAEG--GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS  606 (721)
Q Consensus       529 s~~~g~~~l~~~d~~~--g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~  606 (721)
                      +++++..+||+++++.  ++   .+.++.....+..+.|||||++|+|.....    +..+|++||+++++.++++..  
T Consensus       299 s~~~g~~~ly~~~~~~~g~~---~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~----g~~~I~v~dl~~g~~~~Lt~~--  369 (428)
T PRK01029        299 SNKDGRPRIYIMQIDPEGQS---PRLLTKKYRNSSCPAWSPDGKKIAFCSVIK----GVRQICVYDLATGRDYQLTTS--  369 (428)
T ss_pred             ECCCCCceEEEEECcccccc---eEEeccCCCCccceeECCCCCEEEEEEcCC----CCcEEEEEECCCCCeEEccCC--
Confidence            9887788999998863  33   566765544557899999999999998763    556899999999998888752  


Q ss_pred             CCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCCc
Q 004971          607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF  677 (721)
Q Consensus       607 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~~  677 (721)
                      ......+.|||||++|+|.....+.              .+||++|+++++.++|+...+....|+|||.+
T Consensus       370 ~~~~~~p~wSpDG~~L~f~~~~~g~--------------~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        370 PENKESPSWAIDSLHLVYSAGNSNE--------------SELYLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCC--------------ceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence            3456789999999999998776542              36999999999999999877777899999864

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.95  E-value=6.1e-25  Score=235.45  Aligned_cols=262  Identities=19%  Similarity=0.294  Sum_probs=195.6

Q ss_pred             CEEEEEEecC-CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC
Q 004971          333 KFIAVATRRP-TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL  411 (721)
Q Consensus       333 ~~la~~~~~~-g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  411 (721)
                      ++|+|+.... +.....|+++|.+..+.+.++..   ......+.|||||++|+|.+...+                   
T Consensus       164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~---~~~~~~p~wSPDG~~la~~s~~~g-------------------  221 (429)
T PRK03629        164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRS---PQPLMSPAWSPDGSKLAYVTFESG-------------------  221 (429)
T ss_pred             CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecC---CCceeeeEEcCCCCEEEEEEecCC-------------------
Confidence            4677766532 22356799999987766566532   334556777777777776542111                   


Q ss_pred             CcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEE
Q 004971          412 PDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDI  489 (721)
Q Consensus       412 ~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i  489 (721)
                                                ...|+++++.+++.+.+.  .+....+.|||||++|+++..      ..+...|
T Consensus       222 --------------------------~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~------~~g~~~I  269 (429)
T PRK03629        222 --------------------------RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALS------KTGSLNL  269 (429)
T ss_pred             --------------------------CcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEc------CCCCcEE
Confidence                                      234666777777666655  344567899999999998763      2445568


Q ss_pred             EEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCC
Q 004971          490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG  569 (721)
Q Consensus       490 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG  569 (721)
                      |.++.+++    ..++++........+.|||||++|+|.+++.+..+||++|+++++   ..+++........+.|||||
T Consensus       270 ~~~d~~tg----~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~---~~~lt~~~~~~~~~~~SpDG  342 (429)
T PRK03629        270 YVMDLASG----QIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQDADVSSDG  342 (429)
T ss_pred             EEEECCCC----CEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC---eEEeecCCCCccCEEECCCC
Confidence            88887764    677888776667889999999999999987777899999999887   56666544444679999999


Q ss_pred             CEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEE
Q 004971          570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF  649 (721)
Q Consensus       570 ~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  649 (721)
                      ++|++.....    +...|+++|+++++.+.++..   .....+.|||||++|++.+.+.+.              ..|+
T Consensus       343 ~~Ia~~~~~~----g~~~I~~~dl~~g~~~~Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~--------------~~l~  401 (429)
T PRK03629        343 KFMVMVSSNG----GQQHIAKQDLATGGVQVLTDT---FLDETPSIAPNGTMVIYSSSQGMG--------------SVLN  401 (429)
T ss_pred             CEEEEEEccC----CCceEEEEECCCCCeEEeCCC---CCCCCceECCCCCEEEEEEcCCCc--------------eEEE
Confidence            9999988763    456899999999988877632   235689999999999999987653              2599


Q ss_pred             EEEcCCCCeEEeccCCCCCCCceecCC
Q 004971          650 KIKLDGSDLKRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       650 ~~d~~~~~~~~lt~~~~~~~~~~~sp~  676 (721)
                      +++++|+..++|+.+.+....|+|+|.
T Consensus       402 ~~~~~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        402 LVSTDGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             EEECCCCCeEECccCCCCcCCcccCCC
Confidence            999999999999887777899999985

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.95  E-value=3.8e-25  Score=238.68  Aligned_cols=263  Identities=26%  Similarity=0.451  Sum_probs=202.2

Q ss_pred             CCEEEEEEeeCCCCCCCCcceeEEEeccCCC-CcceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEe
Q 004971          381 SSRVGYHKCRGGSTREDGNNQLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY  455 (721)
Q Consensus       381 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~  455 (721)
                      ..+|+|.....+..  ....+|++.+.++.. ..++........+.|||||++|+|+.    ...|++||+.+++.+++.
T Consensus       165 ~~~iafv~~~~~~~--~~~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~  242 (435)
T PRK05137        165 DTRIVYVAESGPKN--KRIKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG  242 (435)
T ss_pred             CCeEEEEEeeCCCC--CcceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee
Confidence            45778876654311  001578888876553 23443344456789999999999983    468999999999888877


Q ss_pred             --ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCC
Q 004971          456 --FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG  533 (721)
Q Consensus       456 --~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g  533 (721)
                        .+....+.|||||++|++...      .++...||.++..++    ..++++.+......+.|||||++|+|.+++.+
T Consensus       243 ~~~g~~~~~~~SPDG~~la~~~~------~~g~~~Iy~~d~~~~----~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g  312 (435)
T PRK05137        243 NFPGMTFAPRFSPDGRKVVMSLS------QGGNTDIYTMDLRSG----TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG  312 (435)
T ss_pred             cCCCcccCcEECCCCCEEEEEEe------cCCCceEEEEECCCC----ceEEccCCCCccCceeEcCCCCEEEEEECCCC
Confidence              456678999999999998863      356678998888775    77888887766778999999999999998878


Q ss_pred             ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCe
Q 004971          534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHP  613 (721)
Q Consensus       534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~  613 (721)
                      ..+||++|+++++   .++++.+......+.|||||++|++.....    +...|+++|++++..+.++.   ......+
T Consensus       313 ~~~Iy~~d~~g~~---~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~----~~~~i~~~d~~~~~~~~lt~---~~~~~~p  382 (435)
T PRK05137        313 SPQLYVMNADGSN---PRRISFGGGRYSTPVWSPRGDLIAFTKQGG----GQFSIGVMKPDGSGERILTS---GFLVEGP  382 (435)
T ss_pred             CCeEEEEECCCCC---eEEeecCCCcccCeEECCCCCEEEEEEcCC----CceEEEEEECCCCceEeccC---CCCCCCC
Confidence            8899999999887   667775555556799999999999988653    45789999998877666653   2356789


Q ss_pred             EECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCCc
Q 004971          614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF  677 (721)
Q Consensus       614 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~~  677 (721)
                      .|||||+.|+|.+...+..           ....||++|+++++.++|+. .+....|+|+|.+
T Consensus       383 ~~spDG~~i~~~~~~~~~~-----------~~~~L~~~dl~g~~~~~l~~-~~~~~~p~Wsp~~  434 (435)
T PRK05137        383 TWAPNGRVIMFFRQTPGSG-----------GAPKLYTVDLTGRNEREVPT-PGDASDPAWSPLL  434 (435)
T ss_pred             eECCCCCEEEEEEccCCCC-----------CcceEEEEECCCCceEEccC-CCCccCcccCCCC
Confidence            9999999999988765421           01269999999999988885 5567899999853

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.94  E-value=1e-22  Score=202.87  Aligned_cols=482  Identities=14%  Similarity=0.143  Sum_probs=307.6

Q ss_pred             CCCCceEEEEeecCCCcceeEEeccCCCCCCCCc-eeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCC
Q 004971           26 SSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTAN-EIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDP  104 (721)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~  104 (721)
                      ++-++.|.|.      ...-++..+++.    .. ...-+.|.-...-++|||.|-                        
T Consensus        27 dpkgd~ilY~------nGksv~ir~i~~----~~~~~iYtEH~~~vtVAkySPsG~------------------------   72 (603)
T KOG0318|consen   27 DPKGDNILYT------NGKSVIIRNIDN----PASVDIYTEHAHQVTVAKYSPSGF------------------------   72 (603)
T ss_pred             CCCCCeEEEe------CCCEEEEEECCC----ccceeeeccccceeEEEEeCCCce------------------------
Confidence            4455667776      445678877765    33 455678877888899999995                        


Q ss_pred             CCceEEEEeeecCCceeEEeeeecCcccccccchhhhccccccccceeeccccccccCCceeeeeecccccCCEEEEEec
Q 004971          105 PPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVST  184 (721)
Q Consensus       105 ~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~  184 (721)
                         +|+ +++..|+++||.--   .+    ..-  |..         ..+.+++--.+..|     ++  |+++|+.+.+
T Consensus        73 ---yiA-SGD~sG~vRIWdtt---~~----~hi--LKn---------ef~v~aG~I~Di~W-----d~--ds~RI~avGE  123 (603)
T KOG0318|consen   73 ---YIA-SGDVSGKVRIWDTT---QK----EHI--LKN---------EFQVLAGPIKDISW-----DF--DSKRIAAVGE  123 (603)
T ss_pred             ---EEe-ecCCcCcEEEEecc---Cc----cee--eee---------eeeeccccccccee-----CC--CCcEEEEEec
Confidence               544 56677999999743   21    111  221         01122222234479     88  9999999887


Q ss_pred             CCCCCCCCCccceEEEEeCCC------c-------------ceEee-c----------------------CCCCCccccc
Q 004971          185 HENPGTPRTSWAAVYSTELKT------G-------------LTRRL-T----------------------PYGVADFSPA  222 (721)
Q Consensus       185 ~~~~~~~~~~~~~l~~v~~~~------g-------------~~~~l-t----------------------~~~~~~~~p~  222 (721)
                      +.+.      +.++|..|..+      |             ++.|+ |                      .|..-....+
T Consensus       124 Grer------fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VR  197 (603)
T KOG0318|consen  124 GRER------FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVR  197 (603)
T ss_pred             Cccc------eeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEE
Confidence            6542      24666665321      1             11111 1                      1222224457


Q ss_pred             cCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEe----ccCC--cceeccCCeEEEEeccCCCCcEEEEE
Q 004971          223 VSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIV----ENGG--WPCWVDESTLFFHRKSEEDDWISVYK  296 (721)
Q Consensus       223 ~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~----~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~  296 (721)
                      |||||+++|.+..+            ..|++||=.+|+..-...    +.++  ..+|+||++-+++...  +....||.
T Consensus       198 ysPDG~~Fat~gsD------------gki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa--Dkt~KIWd  263 (603)
T KOG0318|consen  198 YSPDGSRFATAGSD------------GKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA--DKTIKIWD  263 (603)
T ss_pred             ECCCCCeEEEecCC------------ccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC--CceEEEEE
Confidence            99999999998754            469999998888655443    2223  3599999875553222  45566665


Q ss_pred             EecCC--------Cccee--------------------------ccccceEEeCCCCCcccCceeecCCCCEEEEEEecC
Q 004971          297 VILPQ--------TGLVS--------------------------TESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRP  342 (721)
Q Consensus       297 ~~~~~--------~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~  342 (721)
                      +....        +..++                          .+...+..+.+|.-.+..+.++| ||++|+..    
T Consensus       264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~Sg----  338 (603)
T KOG0318|consen  264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSG----  338 (603)
T ss_pred             eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEee----
Confidence            53321        00000                          01112223334445566778999 99888763    


Q ss_pred             CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC---CCcceeccc
Q 004971          343 TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP---LPDISLFRF  419 (721)
Q Consensus       343 g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~  419 (721)
                       +.++.|.-||..+|..-.+.. ..|...+..++-+..+ .|+....++.         +.+.++...   .........
T Consensus       339 -syDG~I~~W~~~~g~~~~~~g-~~h~nqI~~~~~~~~~-~~~t~g~Dd~---------l~~~~~~~~~~t~~~~~~lg~  406 (603)
T KOG0318|consen  339 -SYDGHINSWDSGSGTSDRLAG-KGHTNQIKGMAASESG-ELFTIGWDDT---------LRVISLKDNGYTKSEVVKLGS  406 (603)
T ss_pred             -ccCceEEEEecCCcccccccc-ccccceEEEEeecCCC-cEEEEecCCe---------EEEEecccCcccccceeecCC
Confidence             356679999999887554431 2334445555555433 4555555554         444444322   111122334


Q ss_pred             CCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971          420 DGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD  498 (721)
Q Consensus       420 ~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~  498 (721)
                      ....++..+||..++.+...+|.++.-.++ ...+. .-.....+.+||++.+++..       .+++++||.+.-+.. 
T Consensus       407 QP~~lav~~d~~~avv~~~~~iv~l~~~~~-~~~~~~~y~~s~vAv~~~~~~vaVGG-------~Dgkvhvysl~g~~l-  477 (603)
T KOG0318|consen  407 QPKGLAVLSDGGTAVVACISDIVLLQDQTK-VSSIPIGYESSAVAVSPDGSEVAVGG-------QDGKVHVYSLSGDEL-  477 (603)
T ss_pred             CceeEEEcCCCCEEEEEecCcEEEEecCCc-ceeeccccccceEEEcCCCCEEEEec-------ccceEEEEEecCCcc-
Confidence            445678888887777777778877763322 22222 34567899999999999985       578899999876543 


Q ss_pred             CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971          499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~  578 (721)
                        .+...+..+.+.+..+++||||++|+....   ...+.+||+++.+. .......+...+..++||||.+.+|.++.+
T Consensus       478 --~ee~~~~~h~a~iT~vaySpd~~yla~~Da---~rkvv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSlD  551 (603)
T KOG0318|consen  478 --KEEAKLLEHRAAITDVAYSPDGAYLAAGDA---SRKVVLYDVASREV-KTNRWAFHTAKINCVAWSPNNKLVATGSLD  551 (603)
T ss_pred             --cceeeeecccCCceEEEECCCCcEEEEecc---CCcEEEEEcccCce-ecceeeeeeeeEEEEEeCCCceEEEecccc
Confidence              234456667778999999999999998877   78899999998874 233344566678899999999999999988


Q ss_pred             CCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       579 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      .       .|++|+++...........|...++.+.|- |...|+.+..+..
T Consensus       552 t-------~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~  595 (603)
T KOG0318|consen  552 T-------NVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDAN  595 (603)
T ss_pred             c-------eEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCcce
Confidence            5       899999987655544444577778999997 5566777776654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.94  E-value=1.3e-24  Score=233.26  Aligned_cols=256  Identities=28%  Similarity=0.452  Sum_probs=197.0

Q ss_pred             CEEEEEEeeCCCCCCCCcceeEEEeccCCC-CcceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEe-
Q 004971          382 SRVGYHKCRGGSTREDGNNQLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY-  455 (721)
Q Consensus       382 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~-  455 (721)
                      .+|+|.......      .++++.+..+.. ..++........++|||||++|+|..    ...|+++|+.+++.+.+. 
T Consensus       164 ~~iayv~~~~~~------~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~  237 (427)
T PRK02889        164 TRIAYVIKTGNR------YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN  237 (427)
T ss_pred             cEEEEEEccCCc------cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec
Confidence            456665533221      467777765442 22333333455789999999999984    356999999999887776 


Q ss_pred             -ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCc
Q 004971          456 -FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY  534 (721)
Q Consensus       456 -~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~  534 (721)
                       .+....+.|||||++|++...      .++..+||.++..++    ..++++.+......+.|||||++|+|.+++.+.
T Consensus       238 ~~g~~~~~~~SPDG~~la~~~~------~~g~~~Iy~~d~~~~----~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~  307 (427)
T PRK02889        238 FKGSNSAPAWSPDGRTLAVALS------RDGNSQIYTVNADGS----GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA  307 (427)
T ss_pred             CCCCccceEECCCCCEEEEEEc------cCCCceEEEEECCCC----CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCC
Confidence             456678999999999998763      456789999998765    677887766666789999999999999988778


Q ss_pred             eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeE
Q 004971          535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY  614 (721)
Q Consensus       535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~  614 (721)
                      .+||++++.+++   ...++........++|||||++|+|.....    +...|++||+.+++.+.++..   .....+.
T Consensus       308 ~~Iy~~~~~~g~---~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~----g~~~I~v~d~~~g~~~~lt~~---~~~~~p~  377 (427)
T PRK02889        308 PQIYRMPASGGA---AQRVTFTGSYNTSPRISPDGKLLAYISRVG----GAFKLYVQDLATGQVTALTDT---TRDESPS  377 (427)
T ss_pred             cEEEEEECCCCc---eEEEecCCCCcCceEECCCCCEEEEEEccC----CcEEEEEEECCCCCeEEccCC---CCccCce
Confidence            899999998877   555553333345789999999999988763    556899999999988877642   3457899


Q ss_pred             ECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCCc
Q 004971          615 FSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF  677 (721)
Q Consensus       615 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~~  677 (721)
                      |+|||+.|+|.+.+.+.              ..||+++++++..++++...+....|+|||..
T Consensus       378 ~spdg~~l~~~~~~~g~--------------~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~~  426 (427)
T PRK02889        378 FAPNGRYILYATQQGGR--------------SVLAAVSSDGRIKQRLSVQGGDVREPSWGPFM  426 (427)
T ss_pred             ECCCCCEEEEEEecCCC--------------EEEEEEECCCCceEEeecCCCCCCCCccCCCC
Confidence            99999999999987764              36999999888888887666777899999963

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.94  E-value=5.5e-24  Score=229.33  Aligned_cols=243  Identities=25%  Similarity=0.374  Sum_probs=189.4

Q ss_pred             ceeEEEeccCC-CCcceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEE
Q 004971          400 NQLLLENIKSP-LPDISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVV  472 (721)
Q Consensus       400 ~~l~~~~~~~~-~~~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la  472 (721)
                      ..+++.+..+. ...++........++|||||++|+|+.    ...|+++++.+++.+.+.  .+....+.|||||++|+
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~  263 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA  263 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence            45777776544 223333333456789999999999984    457999999999887776  44556899999999999


Q ss_pred             EEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE
Q 004971          473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR  552 (721)
Q Consensus       473 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~  552 (721)
                      +...      .++...||.++..++    ..++++.+......++|||||++|+|.+++.+..+||++++.+++   .++
T Consensus       264 ~~~s------~~g~~~Iy~~d~~~g----~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~---~~~  330 (433)
T PRK04922        264 LTLS------RDGNPEIYVMDLGSR----QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS---AER  330 (433)
T ss_pred             EEEe------CCCCceEEEEECCCC----CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---eEE
Confidence            8763      345567888887765    677787766566789999999999999988777899999999887   566


Q ss_pred             CcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCc
Q 004971          553 LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGIS  632 (721)
Q Consensus       553 l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~  632 (721)
                      ++........++|||||++|++.....    +...|++||+.+++.+.++.   ......+.|||||++|+|.+.+.+. 
T Consensus       331 lt~~g~~~~~~~~SpDG~~Ia~~~~~~----~~~~I~v~d~~~g~~~~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~-  402 (433)
T PRK04922        331 LTFQGNYNARASVSPDGKKIAMVHGSG----GQYRIAVMDLSTGSVRTLTP---GSLDESPSFAPNGSMVLYATREGGR-  402 (433)
T ss_pred             eecCCCCccCEEECCCCCEEEEEECCC----CceeEEEEECCCCCeEECCC---CCCCCCceECCCCCEEEEEEecCCc-
Confidence            664433445799999999999987653    55689999999998887763   2345679999999999999887543 


Q ss_pred             CCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971          633 AEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       633 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~  676 (721)
                                   ..||+++++++..++|+.+.+....|+|+|.
T Consensus       403 -------------~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp~  433 (433)
T PRK04922        403 -------------GVLAAVSTDGRVRQRLVSADGEVREPAWSPY  433 (433)
T ss_pred             -------------eEEEEEECCCCceEEcccCCCCCCCCccCCC
Confidence                         3699999999988999876667788999983

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.94  E-value=7.5e-24  Score=227.83  Aligned_cols=258  Identities=21%  Similarity=0.333  Sum_probs=196.5

Q ss_pred             CEEEEEEeeCCCCCCCCcceeEEEeccCCC-CcceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEe-
Q 004971          382 SRVGYHKCRGGSTREDGNNQLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY-  455 (721)
Q Consensus       382 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~-  455 (721)
                      .+|+|........   ...++++.+..+.. ..++........+.|||||++|+|+.    ...||++|+.+++.+.+. 
T Consensus       183 ~riayv~~~~~~~---~~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~  259 (448)
T PRK04792        183 TRIAYVVVNDKDK---YPYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS  259 (448)
T ss_pred             CEEEEEEeeCCCC---CceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC
Confidence            4556655443211   01457777765542 22333333445789999999999983    347999999999887776 


Q ss_pred             -ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCc
Q 004971          456 -FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY  534 (721)
Q Consensus       456 -~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~  534 (721)
                       .+....+.|||||++|+++..      .++...||.++..++    ..++++.+......++|||||++|+|.+.+.+.
T Consensus       260 ~~g~~~~~~wSPDG~~La~~~~------~~g~~~Iy~~dl~tg----~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~  329 (448)
T PRK04792        260 FPGINGAPRFSPDGKKLALVLS------KDGQPEIYVVDIATK----ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGK  329 (448)
T ss_pred             CCCCcCCeeECCCCCEEEEEEe------CCCCeEEEEEECCCC----CeEECccCCCCccceEECCCCCEEEEEECCCCC
Confidence             445568999999999999763      356778999988775    778888766667789999999999999988888


Q ss_pred             eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeE
Q 004971          535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY  614 (721)
Q Consensus       535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~  614 (721)
                      .+||++|+++++   ...++........++|||||++|+|.....    +..+||++|+++++.+.++..   .....+.
T Consensus       330 ~~Iy~~dl~~g~---~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~----g~~~I~~~dl~~g~~~~lt~~---~~d~~ps  399 (448)
T PRK04792        330 PQIYRVNLASGK---VSRLTFEGEQNLGGSITPDGRSMIMVNRTN----GKFNIARQDLETGAMQVLTST---RLDESPS  399 (448)
T ss_pred             ceEEEEECCCCC---EEEEecCCCCCcCeeECCCCCEEEEEEecC----CceEEEEEECCCCCeEEccCC---CCCCCce
Confidence            899999999888   566653333335689999999999988753    557899999999988777632   2345789


Q ss_pred             ECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971          615 FSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       615 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~  676 (721)
                      |+|||+.|+|.+.+.+.              ..||+++++|+..++|+...+....|+|||.
T Consensus       400 ~spdG~~I~~~~~~~g~--------------~~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        400 VAPNGTMVIYSTTYQGK--------------QVLAAVSIDGRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             ECCCCCEEEEEEecCCc--------------eEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence            99999999999887653              2699999999888899876666789999985

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.93  E-value=1e-23  Score=224.86  Aligned_cols=263  Identities=21%  Similarity=0.315  Sum_probs=196.1

Q ss_pred             CCCEEEEEEecCCC----CeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCE--EEEEEeeCCCCCCCCcceeEE
Q 004971          331 NNKFIAVATRRPTS----SYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSR--VGYHKCRGGSTREDGNNQLLL  404 (721)
Q Consensus       331 dG~~la~~~~~~g~----~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~--l~~~~~~~~~~~~~~~~~l~~  404 (721)
                      -+++|+|+....+.    ....||++|.++++.++++..   ......|.|||||+.  ++|.+...+.      .++|+
T Consensus       145 ~~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~---~~~~~sP~wSPDG~~~~~~y~S~~~g~------~~I~~  215 (428)
T PRK01029        145 SSGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQE---HSLSITPTWMHIGSGFPYLYVSYKLGV------PKIFL  215 (428)
T ss_pred             ccCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccC---CCCcccceEccCCCceEEEEEEccCCC------ceEEE
Confidence            45788888654331    245799999998888777643   334568999999987  5556665542      67999


Q ss_pred             EeccCCC-CcceecccCCCCceeCcCCCEEEEEe----CCcEEE--EECCC---CceEEEee---cCceeeEEcCCCCeE
Q 004971          405 ENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVE----FPGVYV--VNSDG---SNRRQVYF---KNAFSTVWDPVREAV  471 (721)
Q Consensus       405 ~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v--~d~~~---g~~~~l~~---~~~~~~~~spdg~~l  471 (721)
                      .++.++. ..++........++|||||++|+|..    ..++++  +++++   ++.++++.   +....+.|||||++|
T Consensus       216 ~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~L  295 (428)
T PRK01029        216 GSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRL  295 (428)
T ss_pred             EECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEE
Confidence            9997663 34454555556789999999999984    336776  46554   45667762   234689999999999


Q ss_pred             EEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE
Q 004971          472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH  551 (721)
Q Consensus       472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~  551 (721)
                      +|+++      .++...||.++.+..  .+..+.++........+.|||||++|+|.....+..+|+++|+++++   .+
T Consensus       296 af~s~------~~g~~~ly~~~~~~~--g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~---~~  364 (428)
T PRK01029        296 VFVSN------KDGRPRIYIMQIDPE--GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR---DY  364 (428)
T ss_pred             EEEEC------CCCCceEEEEECccc--ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC---eE
Confidence            99984      245567888776431  02466777665566789999999999999887777899999999998   67


Q ss_pred             ECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCC
Q 004971          552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG  619 (721)
Q Consensus       552 ~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG  619 (721)
                      .++........+.|+|||++|+|.....    +...||++|+++++.++++.  ..+....|+|||-.
T Consensus       365 ~Lt~~~~~~~~p~wSpDG~~L~f~~~~~----g~~~L~~vdl~~g~~~~Lt~--~~g~~~~p~Ws~~~  426 (428)
T PRK01029        365 QLTTSPENKESPSWAIDSLHLVYSAGNS----NESELYLISLITKKTRKIVI--GSGEKRFPSWGAFP  426 (428)
T ss_pred             EccCCCCCccceEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEeec--CCCcccCceecCCC
Confidence            7776554557899999999999988763    55789999999999888875  34567789999854

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.93  E-value=1.7e-23  Score=221.37  Aligned_cols=242  Identities=19%  Similarity=0.266  Sum_probs=187.5

Q ss_pred             ceeEEEeccCCCCcceecccCCCCceeCcCCCE-EEEEe----CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEE
Q 004971          400 NQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR-IAFVE----FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVV  472 (721)
Q Consensus       400 ~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~-la~~~----~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la  472 (721)
                      .+|++.+.++..............+.|||||++ ++|..    ..+||++|+.+++.+.++  .+....+.|||||++|+
T Consensus       169 ~~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la  248 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLL  248 (419)
T ss_pred             ceEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEE
Confidence            567888776654332222223346899999996 66652    467999999999998887  44556789999999999


Q ss_pred             EEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE
Q 004971          473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR  552 (721)
Q Consensus       473 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~  552 (721)
                      +...      ..++..||.++.+++    ..++|+........+.|||||++|+|.+++.+..+||++|+++|+   .++
T Consensus       249 ~~~~------~~g~~~Iy~~dl~~g----~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~---~~r  315 (419)
T PRK04043        249 LTMA------PKGQPDIYLYDTNTK----TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS---VEQ  315 (419)
T ss_pred             EEEc------cCCCcEEEEEECCCC----cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC---eEe
Confidence            9874      345678999988775    778888876556778999999999999998888899999999988   666


Q ss_pred             CcCCCcCceeeEEccCCCEEEEEEccCCC-C-CCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          553 LTEGPWSDTMCNWSPDGEWIAFASDRDNP-G-SGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       553 l~~~~~~~~~~~~SpDG~~l~~~~~~~~~-~-~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      ++....  ..+.|||||++|+|....... . .+..+||++|+++++.++|+..   +....+.|||||+.|+|.+...+
T Consensus       316 lt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~---~~~~~p~~SPDG~~I~f~~~~~~  390 (419)
T PRK04043        316 VVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN---GVNQFPRFSSDGGSIMFIKYLGN  390 (419)
T ss_pred             CccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC---CCcCCeEECCCCCEEEEEEccCC
Confidence            765322  236999999999999875321 0 0236899999999999888753   34557999999999999987754


Q ss_pred             CcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCcee
Q 004971          631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAW  673 (721)
Q Consensus       631 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~  673 (721)
                      .              ..|++++++|....+|....+.+..|+|
T Consensus       391 ~--------------~~L~~~~l~g~~~~~l~~~~g~~~~p~W  419 (419)
T PRK04043        391 Q--------------SALGIIRLNYNKSFLFPLKVGKIQSIDW  419 (419)
T ss_pred             c--------------EEEEEEecCCCeeEEeecCCCccCCCCC
Confidence            3              3699999999988888875666788887

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.93  E-value=2.6e-23  Score=225.04  Aligned_cols=243  Identities=21%  Similarity=0.360  Sum_probs=188.8

Q ss_pred             eeEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEE
Q 004971          401 QLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY  473 (721)
Q Consensus       401 ~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~  473 (721)
                      ++++.+.++... .++........+.|||||++|+|+.    ...|+++++++++.+.+.  .+....+.|||||++|+|
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~  259 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF  259 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence            566666654422 2222222345689999999999983    357999999999888877  445567999999999998


Q ss_pred             EecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC
Q 004971          474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL  553 (721)
Q Consensus       474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l  553 (721)
                      ...      .++...||.++.+++    ..++++........+.|||||++|+|.+++.+..+||++++.+++   ..++
T Consensus       260 ~~~------~~g~~~Iy~~d~~~~----~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~---~~~l  326 (430)
T PRK00178        260 VLS------KDGNPEIYVMDLASR----QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR---AERV  326 (430)
T ss_pred             EEc------cCCCceEEEEECCCC----CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEe
Confidence            863      345578888888775    677788766667789999999999999988888899999999888   5566


Q ss_pred             cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcC
Q 004971          554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA  633 (721)
Q Consensus       554 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~  633 (721)
                      +........+.|||||++|+|.....    +...|+++|+.+++.+.++..   .....+.|||||++|+|.+.+.+.  
T Consensus       327 t~~~~~~~~~~~Spdg~~i~~~~~~~----~~~~l~~~dl~tg~~~~lt~~---~~~~~p~~spdg~~i~~~~~~~g~--  397 (430)
T PRK00178        327 TFVGNYNARPRLSADGKTLVMVHRQD----GNFHVAAQDLQRGSVRILTDT---SLDESPSVAPNGTMLIYATRQQGR--  397 (430)
T ss_pred             ecCCCCccceEECCCCCEEEEEEccC----CceEEEEEECCCCCEEEccCC---CCCCCceECCCCCEEEEEEecCCc--
Confidence            54333345689999999999998753    456899999999988877642   344578999999999999887653  


Q ss_pred             CCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCCc
Q 004971          634 EPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF  677 (721)
Q Consensus       634 ~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~~  677 (721)
                                  ..||+++++++..++|+...+....|+|||.+
T Consensus       398 ------------~~l~~~~~~g~~~~~l~~~~g~~~~p~ws~~~  429 (430)
T PRK00178        398 ------------GVLMLVSINGRVRLPLPTAQGEVREPSWSPYL  429 (430)
T ss_pred             ------------eEEEEEECCCCceEECcCCCCCcCCCccCCCC
Confidence                        36999999988888888666667889999864

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.92  E-value=7.3e-23  Score=220.11  Aligned_cols=257  Identities=22%  Similarity=0.291  Sum_probs=186.7

Q ss_pred             CCEEEEEEecCC-CCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC
Q 004971          332 NKFIAVATRRPT-SSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP  410 (721)
Q Consensus       332 G~~la~~~~~~g-~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  410 (721)
                      +++|+|+....+ ..+..|++||.+....+.+..   +...+..+.|||||++|+|.+....                  
T Consensus       168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~---~~~~v~~p~wSPDG~~la~~s~~~~------------------  226 (429)
T PRK01742        168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNR---SSQPLMSPAWSPDGSKLAYVSFENK------------------  226 (429)
T ss_pred             CCEEEEEEEEcCCCceEEEEEECCCCCCceEecc---CCCccccceEcCCCCEEEEEEecCC------------------
Confidence            457888765432 335789999987665444432   1233455666666666665432211                  


Q ss_pred             CCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEE
Q 004971          411 LPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVD  488 (721)
Q Consensus       411 ~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~  488 (721)
                                                 ...|++||+.+++.+.+.  .+....+.|||||++|+++..      .++...
T Consensus       227 ---------------------------~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~------~~g~~~  273 (429)
T PRK01742        227 ---------------------------KSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASS------KDGVLN  273 (429)
T ss_pred             ---------------------------CcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEe------cCCcEE
Confidence                                       124677777766655554  344557899999999999762      356678


Q ss_pred             EEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccC
Q 004971          489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD  568 (721)
Q Consensus       489 i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD  568 (721)
                      ||.++.+++    ..++++.+......+.|||||++|+|.+++.+..+||.++..++.   ...+. ...  ..+.||||
T Consensus       274 Iy~~d~~~~----~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~---~~~l~-~~~--~~~~~SpD  343 (429)
T PRK01742        274 IYVMGANGG----TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG---ASLVG-GRG--YSAQISAD  343 (429)
T ss_pred             EEEEECCCC----CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---eEEec-CCC--CCccCCCC
Confidence            999988765    677888777677889999999999999988888899999998776   44443 222  45789999


Q ss_pred             CCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccE
Q 004971          569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI  648 (721)
Q Consensus       569 G~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  648 (721)
                      |++|++...+        .+++||+.+++.+.++..   .....+.|+|||++|++.+.+++..              .+
T Consensus       344 G~~ia~~~~~--------~i~~~Dl~~g~~~~lt~~---~~~~~~~~sPdG~~i~~~s~~g~~~--------------~l  398 (429)
T PRK01742        344 GKTLVMINGD--------NVVKQDLTSGSTEVLSST---FLDESPSISPNGIMIIYSSTQGLGK--------------VL  398 (429)
T ss_pred             CCEEEEEcCC--------CEEEEECCCCCeEEecCC---CCCCCceECCCCCEEEEEEcCCCce--------------EE
Confidence            9999998764        688899999887766532   2346799999999999998876532              47


Q ss_pred             EEEEcCCCCeEEeccCCCCCCCceecCCc
Q 004971          649 FKIKLDGSDLKRLTQNSFEDGTPAWGPRF  677 (721)
Q Consensus       649 ~~~d~~~~~~~~lt~~~~~~~~~~~sp~~  677 (721)
                      ++++++|+..++|+.+.+....|+|||.+
T Consensus       399 ~~~~~~G~~~~~l~~~~g~~~~p~wsp~~  427 (429)
T PRK01742        399 QLVSADGRFKARLPGSDGQVKFPAWSPYL  427 (429)
T ss_pred             EEEECCCCceEEccCCCCCCCCcccCCCC
Confidence            78888898899998877778899999963

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.92  E-value=8.3e-23  Score=220.50  Aligned_cols=258  Identities=21%  Similarity=0.342  Sum_probs=193.8

Q ss_pred             CEEEEEEecCCCC--eeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC
Q 004971          333 KFIAVATRRPTSS--YRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP  410 (721)
Q Consensus       333 ~~la~~~~~~g~~--~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  410 (721)
                      .+|+|+....+..  ...|+++|.++...+.++..   ...+..+.|||||++|+|.+...+.      ..++++++.++
T Consensus       166 ~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~---~~~v~~p~wSpDG~~lay~s~~~g~------~~i~~~dl~~g  236 (435)
T PRK05137        166 TRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDG---SSLVLTPRFSPNRQEITYMSYANGR------PRVYLLDLETG  236 (435)
T ss_pred             CeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecC---CCCeEeeEECCCCCEEEEEEecCCC------CEEEEEECCCC
Confidence            4788876654422  46799999987776666532   4567789999999999998765432      57899998766


Q ss_pred             CC-cceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCC
Q 004971          411 LP-DISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASE  483 (721)
Q Consensus       411 ~~-~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~  483 (721)
                      .. .+.........+.|||||++|++..    ..+||++|+++++.++++  .+....+.|||||++|+|.++      .
T Consensus       237 ~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~------~  310 (435)
T PRK05137        237 QRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESD------R  310 (435)
T ss_pred             cEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEEC------C
Confidence            32 2333333445789999999998873    467999999999988887  334567999999999999984      3


Q ss_pred             CCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceee
Q 004971          484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC  563 (721)
Q Consensus       484 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~  563 (721)
                      .+...||.++.+++    ..++++........+.|||||++|++.....+..+|+++|++++.   .+.++.. ..+..+
T Consensus       311 ~g~~~Iy~~d~~g~----~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~---~~~lt~~-~~~~~p  382 (435)
T PRK05137        311 SGSPQLYVMNADGS----NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG---ERILTSG-FLVEGP  382 (435)
T ss_pred             CCCCeEEEEECCCC----CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc---eEeccCC-CCCCCC
Confidence            34567888887764    677787665556679999999999999876666799999998776   5556543 345789


Q ss_pred             EEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC
Q 004971          564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP  617 (721)
Q Consensus       564 ~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp  617 (721)
                      .|||||+.|+|....... .+...||++|+++++.+.+..   .+....|+|||
T Consensus       383 ~~spDG~~i~~~~~~~~~-~~~~~L~~~dl~g~~~~~l~~---~~~~~~p~Wsp  432 (435)
T PRK05137        383 TWAPNGRVIMFFRQTPGS-GGAPKLYTVDLTGRNEREVPT---PGDASDPAWSP  432 (435)
T ss_pred             eECCCCCEEEEEEccCCC-CCcceEEEEECCCCceEEccC---CCCccCcccCC
Confidence            999999999998875310 011589999999988776652   34578899997

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.91  E-value=6e-22  Score=212.35  Aligned_cols=261  Identities=21%  Similarity=0.313  Sum_probs=188.5

Q ss_pred             CeEEEEecc-CCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCC
Q 004971          278 STLFFHRKS-EEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVK  356 (721)
Q Consensus       278 g~l~~~~~~-~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~t  356 (721)
                      .+++|.... +.....+||.+ +.++.       ..++++........++||| ||++|+|.+...+  ...|+++|+.+
T Consensus       164 ~riayv~~~~~~~~~~~l~~~-d~dg~-------~~~~lt~~~~~~~~p~wSP-DG~~la~~s~~~g--~~~i~i~dl~~  232 (429)
T PRK03629        164 TRIAYVVQTNGGQFPYELRVS-DYDGY-------NQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESG--RSALVIQTLAN  232 (429)
T ss_pred             CeEEEEEeeCCCCcceeEEEE-cCCCC-------CCEEeecCCCceeeeEEcC-CCCEEEEEEecCC--CcEEEEEECCC
Confidence            366664332 21224578844 43333       4566666665677999999 9999999865433  35699999998


Q ss_pred             CceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE
Q 004971          357 NKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV  436 (721)
Q Consensus       357 g~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~  436 (721)
                      |+.+.+...   ......+.|||||++|++.....                                      |      
T Consensus       233 G~~~~l~~~---~~~~~~~~~SPDG~~La~~~~~~--------------------------------------g------  265 (429)
T PRK03629        233 GAVRQVASF---PRHNGAPAFSPDGSKLAFALSKT--------------------------------------G------  265 (429)
T ss_pred             CCeEEccCC---CCCcCCeEECCCCCEEEEEEcCC--------------------------------------C------
Confidence            876666533   22234567777777766642211                                      1      


Q ss_pred             eCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCc
Q 004971          437 EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNA  514 (721)
Q Consensus       437 ~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  514 (721)
                       ...||++|+++++.++++  ......+.|||||++|+|+++      ..+..+||.++.+++    ..++++.......
T Consensus       266 -~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~------~~g~~~Iy~~d~~~g----~~~~lt~~~~~~~  334 (429)
T PRK03629        266 -SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSD------QAGRPQVYKVNINGG----APQRITWEGSQNQ  334 (429)
T ss_pred             -CcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeC------CCCCceEEEEECCCC----CeEEeecCCCCcc
Confidence             124888888888877777  335678999999999999984      335678999988765    6677766555566


Q ss_pred             ceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971          515 FPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN  594 (721)
Q Consensus       515 ~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~  594 (721)
                      .+.|||||++|++.+...+..+|+++|+++++   .+.++.. .....+.|||||++|+|.+.++    +...|++++++
T Consensus       335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~---~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~----~~~~l~~~~~~  406 (429)
T PRK03629        335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---VQVLTDT-FLDETPSIAPNGTMVIYSSSQG----MGSVLNLVSTD  406 (429)
T ss_pred             CEEECCCCCEEEEEEccCCCceEEEEECCCCC---eEEeCCC-CCCCCceECCCCCEEEEEEcCC----CceEEEEEECC
Confidence            79999999999999877667789999999988   6677643 3346799999999999999874    55679999998


Q ss_pred             CCceEEeeecCCCCCcCCeEECC
Q 004971          595 GTGLRKLIQSGSAGRANHPYFSP  617 (721)
Q Consensus       595 ~~~~~~l~~~~~~~~~~~~~~Sp  617 (721)
                      ++..+++..  +.+.+..|+|||
T Consensus       407 G~~~~~l~~--~~~~~~~p~Wsp  427 (429)
T PRK03629        407 GRFKARLPA--TDGQVKFPAWSP  427 (429)
T ss_pred             CCCeEECcc--CCCCcCCcccCC
Confidence            887777753  566788999998

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.91  E-value=3.2e-22  Score=215.64  Aligned_cols=256  Identities=24%  Similarity=0.375  Sum_probs=191.8

Q ss_pred             CEEEEEEecCC--CCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC
Q 004971          333 KFIAVATRRPT--SSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP  410 (721)
Q Consensus       333 ~~la~~~~~~g--~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  410 (721)
                      .+|+|+.....  .....|+++|..+++.+.++..   ...+..++|||||++|+|.+.....      ..+++.++.++
T Consensus       168 ~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~---~~~v~~p~wSpDg~~la~~s~~~~~------~~l~~~dl~~g  238 (433)
T PRK04922        168 TRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRS---AEPILSPAWSPDGKKLAYVSFERGR------SAIYVQDLATG  238 (433)
T ss_pred             ceEEEEEEeCCCCCceEEEEEECCCCCCceEeecC---CCccccccCCCCCCEEEEEecCCCC------cEEEEEECCCC
Confidence            35777654322  2345799999987766666532   4456789999999999998765431      56888888765


Q ss_pred             CC-cceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEee--cCceeeEEcCCCCeEEEEecCCCCCCC
Q 004971          411 LP-DISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASE  483 (721)
Q Consensus       411 ~~-~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~~--~~~~~~~~spdg~~la~~~~~~~~~~~  483 (721)
                      .. .+.........+.|||||++|++..    ...||++|+++++.++++.  .....+.|+|||++|+|.++      .
T Consensus       239 ~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd------~  312 (433)
T PRK04922        239 QRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSD------R  312 (433)
T ss_pred             CEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEEC------C
Confidence            33 2332333344689999999998872    3479999999999888872  34567999999999999974      3


Q ss_pred             CCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceee
Q 004971          484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC  563 (721)
Q Consensus       484 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~  563 (721)
                      .+...||.++.+++    ..++++........++|||||++|++.+..++..+|++||+.+++   .+.++.+. ....+
T Consensus       313 ~g~~~iy~~dl~~g----~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~---~~~Lt~~~-~~~~p  384 (433)
T PRK04922        313 GGRPQIYRVAASGG----SAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS---VRTLTPGS-LDESP  384 (433)
T ss_pred             CCCceEEEEECCCC----CeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC---eEECCCCC-CCCCc
Confidence            45568888888764    666776555455679999999999998765556789999999887   66777554 34679


Q ss_pred             EEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC
Q 004971          564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP  617 (721)
Q Consensus       564 ~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp  617 (721)
                      .|||||++|+|.....    +...||+++++++..++++.  +.+....|+|||
T Consensus       385 ~~spdG~~i~~~s~~~----g~~~L~~~~~~g~~~~~l~~--~~g~~~~p~wsp  432 (433)
T PRK04922        385 SFAPNGSMVLYATREG----GRGVLAAVSTDGRVRQRLVS--ADGEVREPAWSP  432 (433)
T ss_pred             eECCCCCEEEEEEecC----CceEEEEEECCCCceEEccc--CCCCCCCCccCC
Confidence            9999999999998873    66789999998877776753  346678899997

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.91  E-value=3.8e-22  Score=214.25  Aligned_cols=253  Identities=22%  Similarity=0.371  Sum_probs=189.4

Q ss_pred             EEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-
Q 004971          334 FIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-  412 (721)
Q Consensus       334 ~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-  412 (721)
                      +|+|.....  ...+|+++|.+....+.+...   ...+..++|||||++|+|.+.....      ..+|++++.++.. 
T Consensus       165 ~iayv~~~~--~~~~L~~~D~dG~~~~~l~~~---~~~v~~p~wSPDG~~la~~s~~~~~------~~I~~~dl~~g~~~  233 (427)
T PRK02889        165 RIAYVIKTG--NRYQLQISDADGQNAQSALSS---PEPIISPAWSPDGTKLAYVSFESKK------PVVYVHDLATGRRR  233 (427)
T ss_pred             EEEEEEccC--CccEEEEECCCCCCceEeccC---CCCcccceEcCCCCEEEEEEccCCC------cEEEEEECCCCCEE
Confidence            577776432  245699999876655555432   4456789999999999998765431      5689999876633 


Q ss_pred             cceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCc
Q 004971          413 DISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSE  486 (721)
Q Consensus       413 ~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~  486 (721)
                      .+.........++|||||++|++..    ..+||++|++++..++++  .+....+.|||||++|+|+++      ..+.
T Consensus       234 ~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~------~~g~  307 (427)
T PRK02889        234 VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSD------RGGA  307 (427)
T ss_pred             EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEec------CCCC
Confidence            2332333445689999999999862    357999999988888877  334567999999999999874      3456


Q ss_pred             EEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEc
Q 004971          487 VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS  566 (721)
Q Consensus       487 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~S  566 (721)
                      ..||.++.+++    ..++++........++|||||++|++.+...+..+|++||+.+++   .+.++.... ...+.|+
T Consensus       308 ~~Iy~~~~~~g----~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~---~~~lt~~~~-~~~p~~s  379 (427)
T PRK02889        308 PQIYRMPASGG----AAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ---VTALTDTTR-DESPSFA  379 (427)
T ss_pred             cEEEEEECCCC----ceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC---eEEccCCCC-ccCceEC
Confidence            78999987764    566666544445678999999999999876666789999999887   667765433 4689999


Q ss_pred             cCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC
Q 004971          567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP  617 (721)
Q Consensus       567 pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp  617 (721)
                      |||+.|+|.....    +...|+++++++...+++..  +.+....|+|||
T Consensus       380 pdg~~l~~~~~~~----g~~~l~~~~~~g~~~~~l~~--~~g~~~~p~wsp  424 (427)
T PRK02889        380 PNGRYILYATQQG----GRSVLAAVSSDGRIKQRLSV--QGGDVREPSWGP  424 (427)
T ss_pred             CCCCEEEEEEecC----CCEEEEEEECCCCceEEeec--CCCCCCCCccCC
Confidence            9999999999874    66789999997765555543  456778899998

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=5.3e-23  Score=197.13  Aligned_cols=305  Identities=17%  Similarity=0.152  Sum_probs=225.1

Q ss_pred             eCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971          315 VTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST  394 (721)
Q Consensus       315 ~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~  394 (721)
                      +.+|+..+..++||| +|++|+.     |+.+..+++||+.+..  ++....+|...+.+++|||||+.|+....++.  
T Consensus       111 ~~GH~e~Vl~~~fsp-~g~~l~t-----GsGD~TvR~WD~~TeT--p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~--  180 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSP-TGSRLVT-----GSGDTTVRLWDLDTET--PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGS--  180 (480)
T ss_pred             cCCCCCcEEEEEecC-CCceEEe-----cCCCceEEeeccCCCC--cceeecCCccEEEEEEECCCcchhhccccCCe--
Confidence            345666777889999 9999987     5567779999999876  55555778888999999999999998766665  


Q ss_pred             CCCCcceeEEEeccCCCC---cceecccCCCCcee-----CcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceee
Q 004971          395 REDGNNQLLLENIKSPLP---DISLFRFDGSFPSF-----SPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFST  462 (721)
Q Consensus       395 ~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~-----SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~  462 (721)
                             |.+++.+.+..   .+.........++|     .|..++||..+ ++.+.+||+..+....+.   ...++.+
T Consensus       181 -------I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCv  253 (480)
T KOG0271|consen  181 -------IRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCV  253 (480)
T ss_pred             -------EEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEE
Confidence                   55555444322   11212222233444     56777888774 889999999988765554   4567888


Q ss_pred             EEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcce-----------EEccCCCE-------
Q 004971          463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFP-----------SVSPDGKW-------  524 (721)
Q Consensus       463 ~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------~~SpDg~~-------  524 (721)
                      .|--+|  +.|..      ..+..+++|+.....     ..+.|..+...+..+           +|.|-|++       
T Consensus       254 rwGG~g--liySg------S~DrtIkvw~a~dG~-----~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~  320 (480)
T KOG0271|consen  254 RWGGEG--LIYSG------SQDRTIKVWRALDGK-----LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE  320 (480)
T ss_pred             EEcCCc--eEEec------CCCceEEEEEccchh-----HHHhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence            885444  55554      368899999987522     344455554333333           34444554       


Q ss_pred             ------------------EEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCce
Q 004971          525 ------------------IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF  586 (721)
Q Consensus       525 ------------------l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~  586 (721)
                                        |+..++   +..+++|+....+ +.+.+++.+..-++++.||||+++|+.++.+.       
T Consensus       321 ~~~Al~rY~~~~~~~~erlVSgsD---d~tlflW~p~~~k-kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk-------  389 (480)
T KOG0271|consen  321 QKKALERYEAVLKDSGERLVSGSD---DFTLFLWNPFKSK-KPITRMTGHQALVNHVSFSPDGRYIASASFDK-------  389 (480)
T ss_pred             HHHHHHHHHHhhccCcceeEEecC---CceEEEecccccc-cchhhhhchhhheeeEEECCCccEEEEeeccc-------
Confidence                              887777   7899999976433 23778888888889999999999999999885       


Q ss_pred             eEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-EeccCC
Q 004971          587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLTQNS  665 (721)
Q Consensus       587 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt~~~  665 (721)
                      .|.+|+..+|+....+. +|-..++.++||.|.+.|+..+.+.+                 |.+|+..++++. -|..|.
T Consensus       390 SVkLW~g~tGk~lasfR-GHv~~VYqvawsaDsRLlVS~SkDsT-----------------LKvw~V~tkKl~~DLpGh~  451 (480)
T KOG0271|consen  390 SVKLWDGRTGKFLASFR-GHVAAVYQVAWSADSRLLVSGSKDST-----------------LKVWDVRTKKLKQDLPGHA  451 (480)
T ss_pred             ceeeeeCCCcchhhhhh-hccceeEEEEeccCccEEEEcCCCce-----------------EEEEEeeeeeecccCCCCC
Confidence            89999999997655444 36778899999999999988887775                 889999998875 788888


Q ss_pred             CCCCCceecCCcC
Q 004971          666 FEDGTPAWGPRFI  678 (721)
Q Consensus       666 ~~~~~~~~sp~~l  678 (721)
                      -.+....|+|+.-
T Consensus       452 DEVf~vDwspDG~  464 (480)
T KOG0271|consen  452 DEVFAVDWSPDGQ  464 (480)
T ss_pred             ceEEEEEecCCCc
Confidence            8899999999853

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.91  E-value=9.1e-22  Score=211.73  Aligned_cols=255  Identities=22%  Similarity=0.339  Sum_probs=190.9

Q ss_pred             EEEEEEecCC-CCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC
Q 004971          334 FIAVATRRPT-SSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP  412 (721)
Q Consensus       334 ~la~~~~~~g-~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~  412 (721)
                      +++|.....+ .....|+++|.+..+.+.+...   ...+..+.|||||++|+|.+...+.      .+||+.++.++..
T Consensus       184 riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~---~~~~~~p~wSPDG~~La~~s~~~g~------~~L~~~dl~tg~~  254 (448)
T PRK04792        184 RIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRS---PEPLMSPAWSPDGRKLAYVSFENRK------AEIFVQDIYTQVR  254 (448)
T ss_pred             EEEEEEeeCCCCCceEEEEEeCCCCCceEeecC---CCcccCceECCCCCEEEEEEecCCC------cEEEEEECCCCCe
Confidence            5666654432 2245799999887766666543   4456789999999999998765431      5799999876532


Q ss_pred             -cceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEee--cCceeeEEcCCCCeEEEEecCCCCCCCCC
Q 004971          413 -DISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYF--KNAFSTVWDPVREAVVYTSGGPEFASESS  485 (721)
Q Consensus       413 -~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~~--~~~~~~~~spdg~~la~~~~~~~~~~~~~  485 (721)
                       .++........++|||||++|++..    ...||++|+++++.++++.  .....+.|||||++|+|.+.      ..+
T Consensus       255 ~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~------~~g  328 (448)
T PRK04792        255 EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSE------RGG  328 (448)
T ss_pred             EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEEC------CCC
Confidence             2333333344689999999999872    3469999999999888873  34578999999999999874      345


Q ss_pred             cEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEE
Q 004971          486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNW  565 (721)
Q Consensus       486 ~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~  565 (721)
                      ...||.++..++    +.++++........++|||||++|+|.+...+..+|+++|+++++   +..++... ....+.|
T Consensus       329 ~~~Iy~~dl~~g----~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~---~~~lt~~~-~d~~ps~  400 (448)
T PRK04792        329 KPQIYRVNLASG----KVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA---MQVLTSTR-LDESPSV  400 (448)
T ss_pred             CceEEEEECCCC----CEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC---eEEccCCC-CCCCceE
Confidence            678999998765    667776544445568999999999998876667799999999987   56676543 2357899


Q ss_pred             ccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC
Q 004971          566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP  617 (721)
Q Consensus       566 SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp  617 (721)
                      +|||++|+|....+    +...||+++.+++..+++..  ..+....|+|||
T Consensus       401 spdG~~I~~~~~~~----g~~~l~~~~~~G~~~~~l~~--~~g~~~~p~Wsp  446 (448)
T PRK04792        401 APNGTMVIYSTTYQ----GKQVLAAVSIDGRFKARLPA--GQGEVKSPAWSP  446 (448)
T ss_pred             CCCCCEEEEEEecC----CceEEEEEECCCCceEECcC--CCCCcCCCccCC
Confidence            99999999999774    66789999998776666653  345678899998

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.90  E-value=1.2e-21  Score=207.24  Aligned_cols=258  Identities=12%  Similarity=0.128  Sum_probs=188.1

Q ss_pred             ceEEEEeecCCCcceeEEeccCCCCCCCCceeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCce-
Q 004971           30 SSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQ-  108 (721)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  108 (721)
                      .+++|+...+......||+.+.++    .++++++.+. ....|+|||||+                           + 
T Consensus       155 ~r~~~v~~~~~~~~~~l~~~d~dg----~~~~~~~~~~-~~~~p~wSpDG~---------------------------~~  202 (419)
T PRK04043        155 KRKVVFSKYTGPKKSNIVLADYTL----TYQKVIVKGG-LNIFPKWANKEQ---------------------------TA  202 (419)
T ss_pred             eeEEEEEEccCCCcceEEEECCCC----CceeEEccCC-CeEeEEECCCCC---------------------------cE
Confidence            467777654333456899999988    8888888875 778999999998                           8 


Q ss_pred             EEEEeeecCCceeEEeeeecCcccccccchhhh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCC
Q 004971          109 LIYVTERNGTSNIYYDAVYYDTRRNTRSRTALE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHEN  187 (721)
Q Consensus       109 ~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~  187 (721)
                      ++|++...+..+||++++.+|+    .++  |+ ...   .....           .|     +|  ||++|+|.....+
T Consensus       203 i~y~s~~~~~~~Iyv~dl~tg~----~~~--lt~~~g---~~~~~-----------~~-----SP--DG~~la~~~~~~g  255 (419)
T PRK04043        203 FYYTSYGERKPTLYKYNLYTGK----KEK--IASSQG---MLVVS-----------DV-----SK--DGSKLLLTMAPKG  255 (419)
T ss_pred             EEEEEccCCCCEEEEEECCCCc----EEE--EecCCC---cEEee-----------EE-----CC--CCCEEEEEEccCC
Confidence            5555554467899999988877    555  66 221   11112           68     99  9999999887654


Q ss_pred             CCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEec
Q 004971          188 PGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVE  267 (721)
Q Consensus       188 ~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~  267 (721)
                      .       .+||.++++++..++||........|.|||||++|+|.+++.+         ..+||++++++|+.++++..
T Consensus       256 ~-------~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g---------~~~Iy~~dl~~g~~~rlt~~  319 (419)
T PRK04043        256 Q-------PDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG---------YPNIFMKKLNSGSVEQVVFH  319 (419)
T ss_pred             C-------cEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC---------CceEEEEECCCCCeEeCccC
Confidence            2       3999999999999999987766677899999999999887654         47999999999999888865


Q ss_pred             cCCcceeccCCe-EEEEeccCCC----CcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecC
Q 004971          268 NGGWPCWVDEST-LFFHRKSEED----DWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRP  342 (721)
Q Consensus       268 ~~~~~~ws~dg~-l~~~~~~~~~----g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~  342 (721)
                      ....+.|+|||+ ++|.......    +..+||.+...+ +       ..++++... ....+.||| ||+.|+|.....
T Consensus       320 g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g-------~~~~LT~~~-~~~~p~~SP-DG~~I~f~~~~~  389 (419)
T PRK04043        320 GKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-D-------YIRRLTANG-VNQFPRFSS-DGGSIMFIKYLG  389 (419)
T ss_pred             CCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-C-------CeEECCCCC-CcCCeEECC-CCCEEEEEEccC
Confidence            434569999987 5664332211    336788555444 3       577777654 345799999 999999987653


Q ss_pred             CCCeeeEEEEECCCCceEEeecccCCCCcccCcEE
Q 004971          343 TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI  377 (721)
Q Consensus       343 g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~  377 (721)
                        ....|++++++......+..   ..+.+..|+|
T Consensus       390 --~~~~L~~~~l~g~~~~~l~~---~~g~~~~p~W  419 (419)
T PRK04043        390 --NQSALGIIRLNYNKSFLFPL---KVGKIQSIDW  419 (419)
T ss_pred             --CcEEEEEEecCCCeeEEeec---CCCccCCCCC
Confidence              34569999998765555542   1344555554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.90  E-value=3.2e-21  Score=208.70  Aligned_cols=256  Identities=23%  Similarity=0.348  Sum_probs=190.1

Q ss_pred             CEEEEEEecCC--CCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC
Q 004971          333 KFIAVATRRPT--SSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP  410 (721)
Q Consensus       333 ~~la~~~~~~g--~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  410 (721)
                      .+|+|......  ....+|+++|.++++.+.+...   ...+..+.|||||++|+|.+.....      ..+++.++.++
T Consensus       163 ~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~---~~~~~~p~wSpDG~~la~~s~~~~~------~~l~~~~l~~g  233 (430)
T PRK00178        163 TRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQS---REPILSPRWSPDGKRIAYVSFEQKR------PRIFVQNLDTG  233 (430)
T ss_pred             eeEEEEEeeCCCCCcceEEEEECCCCCCceEEecC---CCceeeeeECCCCCEEEEEEcCCCC------CEEEEEECCCC
Confidence            35777654322  2344699999987776666532   3456789999999999998765431      57899988765


Q ss_pred             CC-cceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCC
Q 004971          411 LP-DISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASE  483 (721)
Q Consensus       411 ~~-~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~  483 (721)
                      .. .+.........+.|||||++|+|..    ...||++|+++++.++++  ......+.|||||++|+|.++      .
T Consensus       234 ~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~------~  307 (430)
T PRK00178        234 RREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSD------R  307 (430)
T ss_pred             CEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEEC------C
Confidence            32 3333333344689999999999872    347999999999888887  334567999999999999874      3


Q ss_pred             CCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceee
Q 004971          484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC  563 (721)
Q Consensus       484 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~  563 (721)
                      .+...||.++..++    ..++++........+.|||||++|+|.....+..+|+++|+.+++   .+.++... ....+
T Consensus       308 ~g~~~iy~~d~~~g----~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~---~~~lt~~~-~~~~p  379 (430)
T PRK00178        308 GGKPQIYKVNVNGG----RAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS---VRILTDTS-LDESP  379 (430)
T ss_pred             CCCceEEEEECCCC----CEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC---EEEccCCC-CCCCc
Confidence            45668888887664    666666544445678999999999999876666789999999987   66776543 33578


Q ss_pred             EEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC
Q 004971          564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP  617 (721)
Q Consensus       564 ~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp  617 (721)
                      .|||||++|+|...+.    +...||+++++++..+.+..  ..+.+..|+|||
T Consensus       380 ~~spdg~~i~~~~~~~----g~~~l~~~~~~g~~~~~l~~--~~g~~~~p~ws~  427 (430)
T PRK00178        380 SVAPNGTMLIYATRQQ----GRGVLMLVSINGRVRLPLPT--AQGEVREPSWSP  427 (430)
T ss_pred             eECCCCCEEEEEEecC----CceEEEEEECCCCceEECcC--CCCCcCCCccCC
Confidence            9999999999999874    66789999998876666653  456678899997

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.90  E-value=7.5e-20  Score=182.62  Aligned_cols=435  Identities=16%  Similarity=0.113  Sum_probs=259.9

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcce-EeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeee
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT-RRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLST  249 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~-~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~  249 (721)
                      .|  -|+.|+|....           .++..+++.... ...|.|........+||.|.|+|....            .+
T Consensus        27 dp--kgd~ilY~nGk-----------sv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~------------sG   81 (603)
T KOG0318|consen   27 DP--KGDNILYTNGK-----------SVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDV------------SG   81 (603)
T ss_pred             CC--CCCeEEEeCCC-----------EEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCC------------cC
Confidence            56  79999997544           788888876654 456778877788899999999988432            35


Q ss_pred             eEEEEEcCCCceeEEE------eccCCcceeccCCe-EEEEeccCCCCcEEEEEEecCCCcc-eec-----------ccc
Q 004971          250 DIYIFLTRDGTQRVKI------VENGGWPCWVDEST-LFFHRKSEEDDWISVYKVILPQTGL-VST-----------ESV  310 (721)
Q Consensus       250 ~i~~~d~~~g~~~~l~------~~~~~~~~ws~dg~-l~~~~~~~~~g~~~l~~~~~~~~~~-~~~-----------~~~  310 (721)
                      .|.+|+....+ ..|-      ..+-...+|+.|++ |.+. -..++....++ +.+.+... +.+           ...
T Consensus        82 ~vRIWdtt~~~-hiLKnef~v~aG~I~Di~Wd~ds~RI~av-GEGrerfg~~F-~~DSG~SvGei~GhSr~ins~~~Kps  158 (603)
T KOG0318|consen   82 KVRIWDTTQKE-HILKNEFQVLAGPIKDISWDFDSKRIAAV-GEGRERFGHVF-LWDSGNSVGEITGHSRRINSVDFKPS  158 (603)
T ss_pred             cEEEEeccCcc-eeeeeeeeecccccccceeCCCCcEEEEE-ecCccceeEEE-EecCCCccceeeccceeEeeeeccCC
Confidence            78888874422 2111      12223568999976 4442 11111111222 11110000 000           000


Q ss_pred             ceEEe-------------------C----CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceE-Eeeccc
Q 004971          311 SIQRV-------------------T----PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFI-ELTRFV  366 (721)
Q Consensus       311 ~~~~~-------------------~----~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~-~l~~~~  366 (721)
                      ++.++                   .    .|...+..+.+|| ||++++.+.     .++.+++||-.+|+.. .+....
T Consensus       159 RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP-DG~~Fat~g-----sDgki~iyDGktge~vg~l~~~~  232 (603)
T KOG0318|consen  159 RPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP-DGSRFATAG-----SDGKIYIYDGKTGEKVGELEDSD  232 (603)
T ss_pred             CceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-CCCeEEEec-----CCccEEEEcCCCccEEEEecCCC
Confidence            11111                   0    1122355678999 999888754     4456999999999732 233234


Q ss_pred             CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceeccc-CC--CCceeCcCCCEEEEE-eCCcEE
Q 004971          367 SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRF-DG--SFPSFSPKGDRIAFV-EFPGVY  442 (721)
Q Consensus       367 ~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~--~~~~~SpDG~~la~~-~~~~l~  442 (721)
                      .|.+.+..++||||+++++.++.+..       .++|-.....-...+..... ..  -..-|- .+ .|+.+ ..+.|-
T Consensus       233 aHkGsIfalsWsPDs~~~~T~SaDkt-------~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd-~lItVSl~G~in  303 (603)
T KOG0318|consen  233 AHKGSIFALSWSPDSTQFLTVSADKT-------IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KD-HLITVSLSGTIN  303 (603)
T ss_pred             CccccEEEEEECCCCceEEEecCCce-------EEEEEeeccceEEEeecCCchhceEEEEEEe-CC-eEEEEEcCcEEE
Confidence            67888999999999999999988877       44554432211111111110 00  113454 33 45444 477888


Q ss_pred             EEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCC-------------CCCCCCcEEEEEEEccC----------
Q 004971          443 VVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPE-------------FASESSEVDIISINVDD----------  496 (721)
Q Consensus       443 v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~-------------~~~~~~~~~i~~~~~~~----------  496 (721)
                      .++.+...+..+.   ...++.+..+||+++|+..+....             +........|-.+...+          
T Consensus       304 ~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~D  383 (603)
T KOG0318|consen  304 YLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWD  383 (603)
T ss_pred             EecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecC
Confidence            8888776643333   457889999999999887753210             00000011111111111          


Q ss_pred             ----------C--C---------Ccc-----------------ceEEcccC--------CCCCcceEEccCCCEEEEEEe
Q 004971          497 ----------V--D---------GVS-----------------AVRRLTTN--------GKNNAFPSVSPDGKWIVFRST  530 (721)
Q Consensus       497 ----------~--~---------~~~-----------------~~~~l~~~--------~~~~~~~~~SpDg~~l~~~s~  530 (721)
                                .  .         ++.                 .+..|...        .......+++||++.+++...
T Consensus       384 d~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~  463 (603)
T KOG0318|consen  384 DTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQ  463 (603)
T ss_pred             CeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecc
Confidence                      0  0         000                 00000000        122344688999998888876


Q ss_pred             eCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCc
Q 004971          531 RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA  610 (721)
Q Consensus       531 ~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~  610 (721)
                         +..|+++.+.+++......+..+...++.+++||||++|+.+....       .+.+||+.+++.....-..|...+
T Consensus       464 ---Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~r-------kvv~yd~~s~~~~~~~w~FHtakI  533 (603)
T KOG0318|consen  464 ---DGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASR-------KVVLYDVASREVKTNRWAFHTAKI  533 (603)
T ss_pred             ---cceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCC-------cEEEEEcccCceecceeeeeeeeE
Confidence               6779999998877544556667778889999999999999988764       899999999876322111267788


Q ss_pred             CCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-Eec-cCCCCCCCceecC
Q 004971          611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLT-QNSFEDGTPAWGP  675 (721)
Q Consensus       611 ~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt-~~~~~~~~~~~sp  675 (721)
                      ..++||||.+.++..+-+..                 |++|+.+..... .+. .|..++....|--
T Consensus       534 ~~~aWsP~n~~vATGSlDt~-----------------Viiysv~kP~~~i~iknAH~~gVn~v~wld  583 (603)
T KOG0318|consen  534 NCVAWSPNNKLVATGSLDTN-----------------VIIYSVKKPAKHIIIKNAHLGGVNSVAWLD  583 (603)
T ss_pred             EEEEeCCCceEEEeccccce-----------------EEEEEccChhhheEeccccccCceeEEEec
Confidence            99999999999998887764                 888887664333 222 3555677777743

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=2.4e-22  Score=192.63  Aligned_cols=305  Identities=15%  Similarity=0.123  Sum_probs=215.6

Q ss_pred             ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEE
Q 004971          272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIEL  351 (721)
Q Consensus       272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l  351 (721)
                      .+|+|+|+.+++  ...|..+++|+.....         .......|...+..++||| ||++||.     |..++.|.+
T Consensus       121 ~~fsp~g~~l~t--GsGD~TvR~WD~~TeT---------p~~t~KgH~~WVlcvawsP-Dgk~iAS-----G~~dg~I~l  183 (480)
T KOG0271|consen  121 VQFSPTGSRLVT--GSGDTTVRLWDLDTET---------PLFTCKGHKNWVLCVAWSP-DGKKIAS-----GSKDGSIRL  183 (480)
T ss_pred             EEecCCCceEEe--cCCCceEEeeccCCCC---------cceeecCCccEEEEEEECC-Ccchhhc-----cccCCeEEE
Confidence            489999987773  4447888999665544         4455567777788999999 9999988     345667999


Q ss_pred             EECCCCceEEeecccCCCCcccCcEEc-----CCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC--cceecccCCCCc
Q 004971          352 FDLVKNKFIELTRFVSPKTHHLNPFIS-----PDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DISLFRFDGSFP  424 (721)
Q Consensus       352 ~dl~tg~~~~l~~~~~~~~~~~~~~~S-----pdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~  424 (721)
                      ||.++|+.. ...+.+|...+..++|-     |..++|+..+.++.         +.++++..+..  .+......+..+
T Consensus       184 wdpktg~~~-g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~---------vrIWd~~~~~~~~~lsgHT~~VTCv  253 (480)
T KOG0271|consen  184 WDPKTGQQI-GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS---------VRIWDTKLGTCVRTLSGHTASVTCV  253 (480)
T ss_pred             ecCCCCCcc-cccccCcccceeEEeecccccCCCccceecccCCCC---------EEEEEccCceEEEEeccCccceEEE
Confidence            999999742 23345677778888884     56777777666665         33344333211  112222234456


Q ss_pred             eeCcCCCEEEEE--eCCcEEEEECCCCceEE-Ee--ecCceee-----------EEcCCCCe------------------
Q 004971          425 SFSPKGDRIAFV--EFPGVYVVNSDGSNRRQ-VY--FKNAFST-----------VWDPVREA------------------  470 (721)
Q Consensus       425 ~~SpDG~~la~~--~~~~l~v~d~~~g~~~~-l~--~~~~~~~-----------~~spdg~~------------------  470 (721)
                      .|.-+|  ++|.  .+..|.+|+...|...+ +.  ...+..+           +|.|.|++                  
T Consensus       254 rwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~  331 (480)
T KOG0271|consen  254 RWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV  331 (480)
T ss_pred             EEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence            776555  4554  37889999988776422 22  1223333           34454544                  


Q ss_pred             -------EEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC
Q 004971          471 -------VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE  543 (721)
Q Consensus       471 -------la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~  543 (721)
                             |+..+       ++....+|.-.....    .+.+++.+...+.++.||||+++|+.++.   +..+.+|+-.
T Consensus       332 ~~~~~erlVSgs-------Dd~tlflW~p~~~kk----pi~rmtgHq~lVn~V~fSPd~r~IASaSF---DkSVkLW~g~  397 (480)
T KOG0271|consen  332 LKDSGERLVSGS-------DDFTLFLWNPFKSKK----PITRMTGHQALVNHVSFSPDGRYIASASF---DKSVKLWDGR  397 (480)
T ss_pred             hccCcceeEEec-------CCceEEEeccccccc----chhhhhchhhheeeEEECCCccEEEEeec---ccceeeeeCC
Confidence                   65554       567788887665543    66788888888999999999999999998   8899999999


Q ss_pred             CCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEE
Q 004971          544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV  623 (721)
Q Consensus       544 ~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~  623 (721)
                      +|+.  +..+-.+-..+..++||.|.+.|+.++.+.       .|.+|++.+++...=.+ +|...+..+.|||||+.++
T Consensus       398 tGk~--lasfRGHv~~VYqvawsaDsRLlVS~SkDs-------TLKvw~V~tkKl~~DLp-Gh~DEVf~vDwspDG~rV~  467 (480)
T KOG0271|consen  398 TGKF--LASFRGHVAAVYQVAWSADSRLLVSGSKDS-------TLKVWDVRTKKLKQDLP-GHADEVFAVDWSPDGQRVA  467 (480)
T ss_pred             Ccch--hhhhhhccceeEEEEeccCccEEEEcCCCc-------eEEEEEeeeeeecccCC-CCCceEEEEEecCCCceee
Confidence            9985  555666667788999999999888887774       89999999877654333 4778889999999999987


Q ss_pred             EEEecC
Q 004971          624 FTSDYG  629 (721)
Q Consensus       624 ~~~~~~  629 (721)
                      ....+.
T Consensus       468 sggkdk  473 (480)
T KOG0271|consen  468 SGGKDK  473 (480)
T ss_pred             cCCCce
Confidence            655443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.89  E-value=2e-19  Score=186.71  Aligned_cols=415  Identities=14%  Similarity=0.097  Sum_probs=255.9

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCc-ceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeee
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTG-LTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLST  249 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g-~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~  249 (721)
                      ||  ||..++.+.+++          +...++.... ...++.. ........|||||+++|.+..             .
T Consensus        64 Sp--~g~lllavdE~g----------~~~lvs~~~r~Vlh~f~f-k~~v~~i~fSPng~~fav~~g-------------n  117 (893)
T KOG0291|consen   64 SP--DGTLLLAVDERG----------RALLVSLLSRSVLHRFNF-KRGVGAIKFSPNGKFFAVGCG-------------N  117 (893)
T ss_pred             CC--CceEEEEEcCCC----------cEEEEecccceeeEEEee-cCccceEEECCCCcEEEEEec-------------c
Confidence            99  998887776654          3333443322 2233323 333344489999999998642             2


Q ss_pred             eEEEEEcCCCcee----EEE---eccCC-----cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCC
Q 004971          250 DIYIFLTRDGTQR----VKI---VENGG-----WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP  317 (721)
Q Consensus       250 ~i~~~d~~~g~~~----~l~---~~~~~-----~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~  317 (721)
                      .|-+|.. .|+.+    ...   ...+.     ...|+.|.+++.  ...+|-...|+.+...+..       .+..+.+
T Consensus       118 ~lqiw~~-P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~--~gsrD~s~rl~~v~~~k~~-------~~~~l~g  187 (893)
T KOG0291|consen  118 LLQIWHA-PGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLV--TGSRDLSARLFGVDGNKNL-------FTYALNG  187 (893)
T ss_pred             eeEEEec-CcchhcccCcceEeeeecCCccceeEEEeccCCceEE--eccccceEEEEEecccccc-------ceEeccC
Confidence            2333333 22222    111   11111     458999999877  3445778888877666544       5666677


Q ss_pred             CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCC-----------------------ce-------EEe--ecc
Q 004971          318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKN-----------------------KF-------IEL--TRF  365 (721)
Q Consensus       318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg-----------------------~~-------~~l--~~~  365 (721)
                      +...+....|.. |...++.++.+     +.|.+|.....                       +.       ...  ..+
T Consensus       188 Hkd~VvacfF~~-~~~~l~tvskd-----G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l  261 (893)
T KOG0291|consen  188 HKDYVVACFFGA-NSLDLYTVSKD-----GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL  261 (893)
T ss_pred             CCcceEEEEecc-CcceEEEEecC-----ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence            765566666777 77666655422     23555544311                       00       000  000


Q ss_pred             cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe--CCcEEE
Q 004971          366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE--FPGVYV  443 (721)
Q Consensus       366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~--~~~l~v  443 (721)
                      ......+...+|.+.-..|++.-..+.       ..+|...--.-...+.........++|+..|.+||+..  -++|-+
T Consensus       262 n~~~~kvtaa~fH~~t~~lvvgFssG~-------f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlV  334 (893)
T KOG0291|consen  262 NQNSSKVTAAAFHKGTNLLVVGFSSGE-------FGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLV  334 (893)
T ss_pred             cccccceeeeeccCCceEEEEEecCCe-------eEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEE
Confidence            001122333344443333333222221       11221110000111111222334568888899999985  458888


Q ss_pred             EECCCCceE--EEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc
Q 004971          444 VNSDGSNRR--QVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP  520 (721)
Q Consensus       444 ~d~~~g~~~--~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp  520 (721)
                      |+..+....  +-. ...+..+++||||+.++..+       ++++++||+....-     +...++.+...+..+.|+.
T Consensus       335 weWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~-------eDgKVKvWn~~Sgf-----C~vTFteHts~Vt~v~f~~  402 (893)
T KOG0291|consen  335 WEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA-------EDGKVKVWNTQSGF-----CFVTFTEHTSGVTAVQFTA  402 (893)
T ss_pred             EEeeccceeeeccccccceeeEEECCCCcEEEecc-------CCCcEEEEeccCce-----EEEEeccCCCceEEEEEEe
Confidence            887654421  111 34677899999999999986       68999999987643     7778888888899999999


Q ss_pred             CCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCC-cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971          521 DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP-WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR  599 (721)
Q Consensus       521 Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~  599 (721)
                      +|+.|+..+-   +..+..||+.....  .+.++... .....++..|.|..+..+..+      ...||+|++.+|+..
T Consensus       403 ~g~~llssSL---DGtVRAwDlkRYrN--fRTft~P~p~QfscvavD~sGelV~AG~~d------~F~IfvWS~qTGqll  471 (893)
T KOG0291|consen  403 RGNVLLSSSL---DGTVRAWDLKRYRN--FRTFTSPEPIQFSCVAVDPSGELVCAGAQD------SFEIFVWSVQTGQLL  471 (893)
T ss_pred             cCCEEEEeec---CCeEEeeeecccce--eeeecCCCceeeeEEEEcCCCCEEEeeccc------eEEEEEEEeecCeee
Confidence            9999999888   88999999987664  55555432 223457778889855444443      369999999999988


Q ss_pred             EeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC--CCeEEeccCCCCCCCceecCC
Q 004971          600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG--SDLKRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       600 ~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~--~~~~~lt~~~~~~~~~~~sp~  676 (721)
                      .+.. +|.+.+..+.|+|+|..|+..+-+.+                 |.+||.=.  +++..|.- ...+.+.+|+|+
T Consensus       472 DiLs-GHEgPVs~l~f~~~~~~LaS~SWDkT-----------------VRiW~if~s~~~vEtl~i-~sdvl~vsfrPd  531 (893)
T KOG0291|consen  472 DILS-GHEGPVSGLSFSPDGSLLASGSWDKT-----------------VRIWDIFSSSGTVETLEI-RSDVLAVSFRPD  531 (893)
T ss_pred             ehhc-CCCCcceeeEEccccCeEEeccccce-----------------EEEEEeeccCceeeeEee-ccceeEEEEcCC
Confidence            7765 49999999999999999998888775                 77777633  34444443 334678899985

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.89  E-value=2.1e-20  Score=202.25  Aligned_cols=262  Identities=29%  Similarity=0.467  Sum_probs=188.1

Q ss_pred             CCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC
Q 004971          331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP  410 (721)
Q Consensus       331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  410 (721)
                      .+.+++|...........|+++|..+++.+.+...   ......+.|||||++|+|.....+                  
T Consensus       154 ~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~---~~~~~~p~~Spdg~~la~~~~~~~------------------  212 (417)
T TIGR02800       154 FSTRIAYVSKSGKSRRYELQVADYDGANPQTITRS---REPILSPAWSPDGQKLAYVSFESG------------------  212 (417)
T ss_pred             cCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecC---CCceecccCCCCCCEEEEEEcCCC------------------
Confidence            45567777655334456689998876655555421   223445566666666655432111                  


Q ss_pred             CCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEE
Q 004971          411 LPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVD  488 (721)
Q Consensus       411 ~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~  488 (721)
                                                 ...|+++++.+++.+.+.  .+....+.|+|||+.|++...      .++...
T Consensus       213 ---------------------------~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~------~~~~~~  259 (417)
T TIGR02800       213 ---------------------------KPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLS------KDGNPD  259 (417)
T ss_pred             ---------------------------CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEC------CCCCcc
Confidence                                       134677777776655554  344567899999999998763      345567


Q ss_pred             EEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccC
Q 004971          489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD  568 (721)
Q Consensus       489 i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD  568 (721)
                      ||.++..+.    ..++++........+.|+|||++|++.+.+.+..+||++|+.+++   ...++........+.||||
T Consensus       260 i~~~d~~~~----~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~~~~~~~~~~~~spd  332 (417)
T TIGR02800       260 IYVMDLDGK----QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---VRRLTFRGGYNASPSWSPD  332 (417)
T ss_pred             EEEEECCCC----CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEeecCCCCccCeEECCC
Confidence            788877664    667777766556678999999999999988777899999999887   5666655445568999999


Q ss_pred             CCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccE
Q 004971          569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI  648 (721)
Q Consensus       569 G~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  648 (721)
                      |++|++.....    +...|+++|+.++..+.++.   ......+.|+|||++|++.+.+.+.              ..|
T Consensus       333 g~~i~~~~~~~----~~~~i~~~d~~~~~~~~l~~---~~~~~~p~~spdg~~l~~~~~~~~~--------------~~l  391 (417)
T TIGR02800       333 GDLIAFVHREG----GGFNIAVMDLDGGGERVLTD---TGLDESPSFAPNGRMILYATTRGGR--------------GVL  391 (417)
T ss_pred             CCEEEEEEccC----CceEEEEEeCCCCCeEEccC---CCCCCCceECCCCCEEEEEEeCCCc--------------EEE
Confidence            99999998763    56789999999877766653   2345678999999999999987764              269


Q ss_pred             EEEEcCCCCeEEeccCCCCCCCceec
Q 004971          649 FKIKLDGSDLKRLTQNSFEDGTPAWG  674 (721)
Q Consensus       649 ~~~d~~~~~~~~lt~~~~~~~~~~~s  674 (721)
                      |+++.+++..+.++...+....|+||
T Consensus       392 ~~~~~~g~~~~~~~~~~g~~~~~~ws  417 (417)
T TIGR02800       392 GLVSTDGRFRARLPLGNGDVREPAWS  417 (417)
T ss_pred             EEEECCCceeeECCCCCCCcCCCCCC
Confidence            99998888888888766667788885

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.87  E-value=4.5e-18  Score=176.79  Aligned_cols=436  Identities=11%  Similarity=0.048  Sum_probs=279.1

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeec-CCCCCccccccCCCCCEEEEEecCCCCCCcccceeee
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLT-PYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLST  249 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~  249 (721)
                      +|  ||..+++-..           .++..+++...+...+. .........+.||||..++.+..++            
T Consensus        23 t~--dG~sviSPvG-----------Nrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g------------   77 (893)
T KOG0291|consen   23 TK--DGNSVISPVG-----------NRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERG------------   77 (893)
T ss_pred             CC--CCCEEEeccC-----------CEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCC------------
Confidence            77  7777776321           17777777665554442 2333344558999998877754332            


Q ss_pred             eEEEEEcCCC-ceeEEEeccC-CcceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCcee
Q 004971          250 DIYIFLTRDG-TQRVKIVENG-GWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPAT  327 (721)
Q Consensus       250 ~i~~~d~~~g-~~~~l~~~~~-~~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (721)
                      ...++++... ...+.....+ +...|||||+.++...   ....+||.....-.. +.-.+...+...++--.+..+.|
T Consensus        78 ~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~---gn~lqiw~~P~~~~~-~~~pFvl~r~~~g~fddi~si~W  153 (893)
T KOG0291|consen   78 RALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGC---GNLLQIWHAPGEIKN-EFNPFVLHRTYLGHFDDITSIDW  153 (893)
T ss_pred             cEEEEecccceeeEEEeecCccceEEECCCCcEEEEEe---cceeEEEecCcchhc-ccCcceEeeeecCCccceeEEEe
Confidence            2333343221 1122222222 3669999999766322   345688865432211 11111222333344446778999


Q ss_pred             ecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEec
Q 004971          328 SPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI  407 (721)
Q Consensus       328 sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  407 (721)
                      |. |.+.++..     +.+...+++.+...+.-....+.+|...+....|+.|...++..+.++.       .-+|-.++
T Consensus       154 s~-DSr~l~~g-----srD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~-------l~~W~~~~  220 (893)
T KOG0291|consen  154 SD-DSRLLVTG-----SRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGA-------LFVWTCDL  220 (893)
T ss_pred             cc-CCceEEec-----cccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCce-------EEEEEecC
Confidence            99 99988773     3455688888876553233344566677777778888777777666554       22222221


Q ss_pred             cCC---------------------CCc----cee---------cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceE
Q 004971          408 KSP---------------------LPD----ISL---------FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRR  452 (721)
Q Consensus       408 ~~~---------------------~~~----~~~---------~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~  452 (721)
                      ..+                     +..    .+.         ........++++.-..|+... .+...++.+.+-...
T Consensus       221 ~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~li  300 (893)
T KOG0291|consen  221 RPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLI  300 (893)
T ss_pred             CCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEE
Confidence            110                     000    000         001122345666544455443 444557777666543


Q ss_pred             EEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEE
Q 004971          453 QVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS  529 (721)
Q Consensus       453 ~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s  529 (721)
                      +..   ...+..+.|+..|.+|++.+.      .-+.+-||.+....     -+-....|-.....+++||||++|+...
T Consensus       301 h~LSis~~~I~t~~~N~tGDWiA~g~~------klgQLlVweWqsEs-----YVlKQQgH~~~i~~l~YSpDgq~iaTG~  369 (893)
T KOG0291|consen  301 HSLSISDQKILTVSFNSTGDWIAFGCS------KLGQLLVWEWQSES-----YVLKQQGHSDRITSLAYSPDGQLIATGA  369 (893)
T ss_pred             EEeecccceeeEEEecccCCEEEEcCC------ccceEEEEEeeccc-----eeeeccccccceeeEEECCCCcEEEecc
Confidence            332   467889999999999999983      45788899888754     2222333445677899999999999998


Q ss_pred             eeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCC
Q 004971          530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR  609 (721)
Q Consensus       530 ~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~  609 (721)
                      +   +..+.+||..+|-+  ....+++...++.+.|+.+|+.|+..+.++       .+..||+...+..+....+....
T Consensus       370 e---DgKVKvWn~~SgfC--~vTFteHts~Vt~v~f~~~g~~llssSLDG-------tVRAwDlkRYrNfRTft~P~p~Q  437 (893)
T KOG0291|consen  370 E---DGKVKVWNTQSGFC--FVTFTEHTSGVTAVQFTARGNVLLSSSLDG-------TVRAWDLKRYRNFRTFTSPEPIQ  437 (893)
T ss_pred             C---CCcEEEEeccCceE--EEEeccCCCceEEEEEEecCCEEEEeecCC-------eEEeeeecccceeeeecCCCcee
Confidence            8   88999999999887  888889998899999999999999999886       89999998776544443334445


Q ss_pred             cCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-EeccCCCCCCCceecCC--cCCccccc-c
Q 004971          610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLTQNSFEDGTPAWGPR--FIRPVDVE-E  685 (721)
Q Consensus       610 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt~~~~~~~~~~~sp~--~l~~~~~~-~  685 (721)
                      ...++..|.|..+...+.+. +               +|++|+.++|++. .|..|.+.+...+|+|.  .|+..+-| .
T Consensus       438 fscvavD~sGelV~AG~~d~-F---------------~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT  501 (893)
T KOG0291|consen  438 FSCVAVDPSGELVCAGAQDS-F---------------EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT  501 (893)
T ss_pred             eeEEEEcCCCCEEEeeccce-E---------------EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce
Confidence            66788888898655444433 2               5999999999876 67778988898899985  67777766 4


Q ss_pred             cc
Q 004971          686 VK  687 (721)
Q Consensus       686 ~~  687 (721)
                      +|
T Consensus       502 VR  503 (893)
T KOG0291|consen  502 VR  503 (893)
T ss_pred             EE
Confidence            54

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=99.86  E-value=1.9e-19  Score=188.61  Aligned_cols=243  Identities=28%  Similarity=0.438  Sum_probs=191.1

Q ss_pred             ceeEEEeccCCC-CcceecccCCCCceeCcCCCEEEEE----eC-CcEEEEECCCCceEEEe--ecCceeeEEcCCCCeE
Q 004971          400 NQLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFV----EF-PGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAV  471 (721)
Q Consensus       400 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~----~~-~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~l  471 (721)
                      .++++.+.++.. ..++........+.|+||++.++|.    .. ..+++++++++....+.  .+....+.|||||++|
T Consensus       173 ~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l  252 (425)
T COG0823         173 YELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKL  252 (425)
T ss_pred             ceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEE
Confidence            456666654332 2223333344568999999999998    23 57999999988866555  6778899999999999


Q ss_pred             EEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE
Q 004971          472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH  551 (721)
Q Consensus       472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~  551 (721)
                      +|+..      .++...||.+++.+.    ...+|+...+....+.|||||++|+|.+++.|..+||+++.+++.   ..
T Consensus       253 ~f~~~------rdg~~~iy~~dl~~~----~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~---~~  319 (425)
T COG0823         253 AFSSS------RDGSPDIYLMDLDGK----NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ---VT  319 (425)
T ss_pred             EEEEC------CCCCccEEEEcCCCC----cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc---ee
Confidence            99984      568999999999886    677788888788899999999999999999999999999999887   67


Q ss_pred             ECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc-eEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG-LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       552 ~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      +++........+.|||||++|+|.....    +...|..+|+.++. .+.++   .......+.|+|+|+.|++.+...+
T Consensus       320 riT~~~~~~~~p~~SpdG~~i~~~~~~~----g~~~i~~~~~~~~~~~~~lt---~~~~~e~ps~~~ng~~i~~~s~~~~  392 (425)
T COG0823         320 RLTFSGGGNSNPVWSPDGDKIVFESSSG----GQWDIDKNDLASGGKIRILT---STYLNESPSWAPNGRMIMFSSGQGG  392 (425)
T ss_pred             EeeccCCCCcCccCCCCCCEEEEEeccC----CceeeEEeccCCCCcEEEcc---ccccCCCCCcCCCCceEEEeccCCC
Confidence            7776655555899999999999999542    44789999997776 44443   3455678999999999999888764


Q ss_pred             CcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971          631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       631 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~  676 (721)
                      .              +.++..++++...+.+....+....|+|+|.
T Consensus       393 ~--------------~~l~~~s~~g~~~~~~~~~~~~~~~p~w~~~  424 (425)
T COG0823         393 G--------------SVLSLVSLDGRVSRPLPLADGDVRVPAWSPV  424 (425)
T ss_pred             C--------------ceEEEeeccceeEEEEeccCcceecccccCC
Confidence            3              3688888888777666655566788888874

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.86  E-value=4.3e-19  Score=190.95  Aligned_cols=257  Identities=19%  Similarity=0.180  Sum_probs=182.7

Q ss_pred             CCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEE
Q 004971          176 GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFL  255 (721)
Q Consensus       176 g~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d  255 (721)
                      +.+|+|+....+...    ...||..|.++...+.|+.+......|.|||||++|+|++.++.         ...||+++
T Consensus       168 ~~ria~v~~~~~~~~----~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~---------~~~i~i~d  234 (429)
T PRK01742        168 RTRIAYVVQKNGGSQ----PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENK---------KSQLVVHD  234 (429)
T ss_pred             CCEEEEEEEEcCCCc----eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCC---------CcEEEEEe
Confidence            677999876543221    14899999988888888887777888999999999999875433         35788888


Q ss_pred             cCCCceeEEEeccCCcceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEE
Q 004971          256 TRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFI  335 (721)
Q Consensus       256 ~~~g~~~~l~~~~~~~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~l  335 (721)
                      +.+|+.+++.                    .                               .......++||| ||++|
T Consensus       235 l~tg~~~~l~--------------------~-------------------------------~~g~~~~~~wSP-DG~~L  262 (429)
T PRK01742        235 LRSGARKVVA--------------------S-------------------------------FRGHNGAPAFSP-DGSRL  262 (429)
T ss_pred             CCCCceEEEe--------------------c-------------------------------CCCccCceeECC-CCCEE
Confidence            8766543321                    0                               000112478999 99999


Q ss_pred             EEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce
Q 004971          336 AVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS  415 (721)
Q Consensus       336 a~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  415 (721)
                      ++.....+  ...||++|+.+++.+.++.   +......+.|||||++|+|.+...+.      .++|..+..+......
T Consensus       263 a~~~~~~g--~~~Iy~~d~~~~~~~~lt~---~~~~~~~~~wSpDG~~i~f~s~~~g~------~~I~~~~~~~~~~~~l  331 (429)
T PRK01742        263 AFASSKDG--VLNIYVMGANGGTPSQLTS---GAGNNTEPSWSPDGQSILFTSDRSGS------PQVYRMSASGGGASLV  331 (429)
T ss_pred             EEEEecCC--cEEEEEEECCCCCeEeecc---CCCCcCCEEECCCCCEEEEEECCCCC------ceEEEEECCCCCeEEe
Confidence            98764433  2458999998887766653   24456789999999999998754432      5688877655432221


Q ss_pred             ecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEE-EEE
Q 004971          416 LFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDII-SIN  493 (721)
Q Consensus       416 ~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~-~~~  493 (721)
                        ......+.|||||++|++.....++++|+.+++.+.+. ......+.|+|||+.|++.+.       ++...+| .++
T Consensus       332 --~~~~~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~-------~g~~~~l~~~~  402 (429)
T PRK01742        332 --GGRGYSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSST-------QGLGKVLQLVS  402 (429)
T ss_pred             --cCCCCCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEc-------CCCceEEEEEE
Confidence              11124578999999999997788999999999877765 334467899999999999873       3344444 445


Q ss_pred             ccCCCCccceEEcccCCCCCcceEEccC
Q 004971          494 VDDVDGVSAVRRLTTNGKNNAFPSVSPD  521 (721)
Q Consensus       494 ~~~~~~~~~~~~l~~~~~~~~~~~~SpD  521 (721)
                      .++.    ..+++..+.+....|+|||-
T Consensus       403 ~~G~----~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        403 ADGR----FKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCC----ceEEccCCCCCCCCcccCCC
Confidence            5554    67788776667788999984

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.82  E-value=1.9e-17  Score=179.20  Aligned_cols=260  Identities=26%  Similarity=0.369  Sum_probs=177.6

Q ss_pred             CeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCC
Q 004971          278 STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKN  357 (721)
Q Consensus       278 g~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg  357 (721)
                      ++++|......++...||..+. .+.       ..++++.....+..+.||| ||++|+|.....+  ...|++||+.++
T Consensus       156 ~~~~~~~~~~~~~~~~l~~~d~-~g~-------~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~--~~~i~v~d~~~g  224 (417)
T TIGR02800       156 TRIAYVSKSGKSRRYELQVADY-DGA-------NPQTITRSREPILSPAWSP-DGQKLAYVSFESG--KPEIYVQDLATG  224 (417)
T ss_pred             CEEEEEEEeCCCCcceEEEEcC-CCC-------CCEEeecCCCceecccCCC-CCCEEEEEEcCCC--CcEEEEEECCCC
Confidence            3566643332245667874443 333       5666776655567889999 9999999765432  356999999988


Q ss_pred             ceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe
Q 004971          358 KFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE  437 (721)
Q Consensus       358 ~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~  437 (721)
                      +...+...   ......+.|+|||+.|++.....+                                             
T Consensus       225 ~~~~~~~~---~~~~~~~~~spDg~~l~~~~~~~~---------------------------------------------  256 (417)
T TIGR02800       225 QREKVASF---PGMNGAPAFSPDGSKLAVSLSKDG---------------------------------------------  256 (417)
T ss_pred             CEEEeecC---CCCccceEECCCCCEEEEEECCCC---------------------------------------------
Confidence            75554422   223334667777766665421111                                             


Q ss_pred             CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcc
Q 004971          438 FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF  515 (721)
Q Consensus       438 ~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  515 (721)
                      ...||++++.++..+++.  ......+.|+|||++|++.+.      ..+...||.++..+.    ...+++........
T Consensus       257 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~------~~g~~~iy~~d~~~~----~~~~l~~~~~~~~~  326 (417)
T TIGR02800       257 NPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSD------RGGSPQIYMMDADGG----EVRRLTFRGGYNAS  326 (417)
T ss_pred             CccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEEC------CCCCceEEEEECCCC----CEEEeecCCCCccC
Confidence            235777777777666665  233457899999999999874      234557888887764    56677766556678


Q ss_pred             eEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971          516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       516 ~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      +.|||||++|++.....+..+|+++|+.++.   ...++... ....+.|+|||++|++...+.    +...+++++.++
T Consensus       327 ~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~---~~~l~~~~-~~~~p~~spdg~~l~~~~~~~----~~~~l~~~~~~g  398 (417)
T TIGR02800       327 PSWSPDGDLIAFVHREGGGFNIAVMDLDGGG---ERVLTDTG-LDESPSFAPNGRMILYATTRG----GRGVLGLVSTDG  398 (417)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEeCCCCC---eEEccCCC-CCCCceECCCCCEEEEEEeCC----CcEEEEEEECCC
Confidence            9999999999999876666799999999876   55565433 346789999999999999874    556899999877


Q ss_pred             CceEEeeecCCCCCcCCeEEC
Q 004971          596 TGLRKLIQSGSAGRANHPYFS  616 (721)
Q Consensus       596 ~~~~~l~~~~~~~~~~~~~~S  616 (721)
                      +..+.++.  ..+....+.||
T Consensus       399 ~~~~~~~~--~~g~~~~~~ws  417 (417)
T TIGR02800       399 RFRARLPL--GNGDVREPAWS  417 (417)
T ss_pred             ceeeECCC--CCCCcCCCCCC
Confidence            66655543  34556667765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.81  E-value=1.6e-17  Score=151.19  Aligned_cols=267  Identities=15%  Similarity=0.163  Sum_probs=197.2

Q ss_pred             CCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceec---cc
Q 004971          344 SSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLF---RF  419 (721)
Q Consensus       344 ~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~---~~  419 (721)
                      +.+..|++|...+|......  ..+...+..+.++||++.|+.+..          ..+.++|+.+... .+..+   ..
T Consensus        17 ~YDhTIRfWqa~tG~C~rTi--qh~dsqVNrLeiTpdk~~LAaa~~----------qhvRlyD~~S~np~Pv~t~e~h~k   84 (311)
T KOG0315|consen   17 GYDHTIRFWQALTGICSRTI--QHPDSQVNRLEITPDKKDLAAAGN----------QHVRLYDLNSNNPNPVATFEGHTK   84 (311)
T ss_pred             cCcceeeeeehhcCeEEEEE--ecCccceeeEEEcCCcchhhhccC----------CeeEEEEccCCCCCceeEEeccCC
Confidence            46778999999999854433  334667788999999999987543          3456666655422 33222   23


Q ss_pred             CCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          420 DGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       420 ~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      .+..+.|.-||++++..+ ++.+.+||+..-..+++.  ...+..+...|+...|+...       .++.+++|++..+.
T Consensus        85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~d-------qsg~irvWDl~~~~  157 (311)
T KOG0315|consen   85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGD-------QSGNIRVWDLGENS  157 (311)
T ss_pred             ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeec-------CCCcEEEEEccCCc
Confidence            345578999999998884 889999999886666655  56788899999999988764       57899999987664


Q ss_pred             CCCccceEEcc-cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc----cceEECcCCCcCceeeEEccCCCE
Q 004971          497 VDGVSAVRRLT-TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG----YGLHRLTEGPWSDTMCNWSPDGEW  571 (721)
Q Consensus       497 ~~~~~~~~~l~-~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~----~~~~~l~~~~~~~~~~~~SpDG~~  571 (721)
                           ....+. .....+..++..|||++|+...+   ...+|+|++-++..    ..+.++..+...+....+|||+++
T Consensus       158 -----c~~~liPe~~~~i~sl~v~~dgsml~a~nn---kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~  229 (311)
T KOG0315|consen  158 -----CTHELIPEDDTSIQSLTVMPDGSMLAAANN---KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY  229 (311)
T ss_pred             -----cccccCCCCCcceeeEEEcCCCcEEEEecC---CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE
Confidence                 333333 34467788999999999998887   67899999876532    112233345566678899999999


Q ss_pred             EEEEEccCCCCCCceeEEEEecCCC-ceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEE
Q 004971          572 IAFASDRDNPGSGSFEMYLIHPNGT-GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK  650 (721)
Q Consensus       572 l~~~~~~~~~~~~~~~i~~~d~~~~-~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  650 (721)
                      |+.++.+.       .+++|+.++- +....+. ++...+...+||.||+||+..+.+..                 ..+
T Consensus       230 lat~ssdk-------tv~iwn~~~~~kle~~l~-gh~rWvWdc~FS~dg~YlvTassd~~-----------------~rl  284 (311)
T KOG0315|consen  230 LATCSSDK-------TVKIWNTDDFFKLELVLT-GHQRWVWDCAFSADGEYLVTASSDHT-----------------ARL  284 (311)
T ss_pred             EEeecCCc-------eEEEEecCCceeeEEEee-cCCceEEeeeeccCccEEEecCCCCc-----------------eee
Confidence            99999885       8999999887 4444443 36778899999999999999888853                 667


Q ss_pred             EEcCCCCeEEec
Q 004971          651 IKLDGSDLKRLT  662 (721)
Q Consensus       651 ~d~~~~~~~~lt  662 (721)
                      |++..++..+..
T Consensus       285 W~~~~~k~v~qy  296 (311)
T KOG0315|consen  285 WDLSAGKEVRQY  296 (311)
T ss_pred             cccccCceeeec
Confidence            788777654443

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.81  E-value=1.2e-18  Score=169.71  Aligned_cols=271  Identities=15%  Similarity=0.122  Sum_probs=214.9

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCC--CCEEEEEEeeCCCCCCCC
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD--SSRVGYHKCRGGSTREDG  398 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~~~~~~  398 (721)
                      .+....||+ |++.|+..+-     .+.+.+|+..+..  .+..+.+|...+..+.|+|.  +..|+.++.++.      
T Consensus       177 Pis~~~fS~-ds~~laT~sw-----sG~~kvW~~~~~~--~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgt------  242 (459)
T KOG0272|consen  177 PISGCSFSR-DSKHLATGSW-----SGLVKVWSVPQCN--LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGT------  242 (459)
T ss_pred             cceeeEeec-CCCeEEEeec-----CCceeEeecCCcc--eeEEEeccccceeeEEEccCCCccceeeeccCCc------
Confidence            445678999 9999988543     3458999998876  44455778888999999998  567888877777      


Q ss_pred             cceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEE
Q 004971          399 NNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYT  474 (721)
Q Consensus       399 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~  474 (721)
                       ..+|-.+-..+...+......+..++|+|+|++|+.++ +..-.+||+.++....+.   ...+..++|.|||..++..
T Consensus       243 -vklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG  321 (459)
T KOG0272|consen  243 -VKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATG  321 (459)
T ss_pred             -eeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeecc
Confidence             45555544444445555555566789999999999985 777889999988754444   5578899999999988776


Q ss_pred             ecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc
Q 004971          475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT  554 (721)
Q Consensus       475 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~  554 (721)
                      .       .+.-.+||++....     .+-.|..+...+..++|||+|..|+..+.   ++.+.+||+.....  +-.+.
T Consensus       322 G-------lD~~~RvWDlRtgr-----~im~L~gH~k~I~~V~fsPNGy~lATgs~---Dnt~kVWDLR~r~~--ly~ip  384 (459)
T KOG0272|consen  322 G-------LDSLGRVWDLRTGR-----CIMFLAGHIKEILSVAFSPNGYHLATGSS---DNTCKVWDLRMRSE--LYTIP  384 (459)
T ss_pred             C-------ccchhheeecccCc-----EEEEecccccceeeEeECCCceEEeecCC---CCcEEEeeeccccc--ceecc
Confidence            4       57788999998765     66777778888999999999999999887   88999999987654  67777


Q ss_pred             CCCcCceeeEEcc-CCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCC
Q 004971          555 EGPWSDTMCNWSP-DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGI  631 (721)
Q Consensus       555 ~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~  631 (721)
                      .+..-+..+.|+| -|.+|+.++.+.       .+.+|...+..+.+... +|.+.+.++..|+||.+|+..+.+.+.
T Consensus       385 AH~nlVS~Vk~~p~~g~fL~TasyD~-------t~kiWs~~~~~~~ksLa-GHe~kV~s~Dis~d~~~i~t~s~DRT~  454 (459)
T KOG0272|consen  385 AHSNLVSQVKYSPQEGYFLVTASYDN-------TVKIWSTRTWSPLKSLA-GHEGKVISLDISPDSQAIATSSFDRTI  454 (459)
T ss_pred             cccchhhheEecccCCeEEEEcccCc-------ceeeecCCCcccchhhc-CCccceEEEEeccCCceEEEeccCcee
Confidence            7877788999999 577777777775       89999988887776655 488999999999999999998887753

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.79  E-value=2.8e-17  Score=149.58  Aligned_cols=272  Identities=14%  Similarity=0.083  Sum_probs=198.9

Q ss_pred             CCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC
Q 004971          288 EDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS  367 (721)
Q Consensus       288 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~  367 (721)
                      .|-.+++|.+....         ..+.+......+..+.+.| |++.|+.+.+      ..|++||+.+++...+..++.
T Consensus        18 YDhTIRfWqa~tG~---------C~rTiqh~dsqVNrLeiTp-dk~~LAaa~~------qhvRlyD~~S~np~Pv~t~e~   81 (311)
T KOG0315|consen   18 YDHTIRFWQALTGI---------CSRTIQHPDSQVNRLEITP-DKKDLAAAGN------QHVRLYDLNSNNPNPVATFEG   81 (311)
T ss_pred             CcceeeeeehhcCe---------EEEEEecCccceeeEEEcC-CcchhhhccC------CeeEEEEccCCCCCceeEEec
Confidence            37788888432221         3333433455678899999 9999988543      349999999998877777788


Q ss_pred             CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC-CCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEE
Q 004971          368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP-LPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVN  445 (721)
Q Consensus       368 ~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d  445 (721)
                      +...+..+.|-.||++++..++++.       .+|  ++++.. ..+.......+..+..+|+...|+.. ..+.|++||
T Consensus        82 h~kNVtaVgF~~dgrWMyTgseDgt-------~kI--WdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWD  152 (311)
T KOG0315|consen   82 HTKNVTAVGFQCDGRWMYTGSEDGT-------VKI--WDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWD  152 (311)
T ss_pred             cCCceEEEEEeecCeEEEecCCCce-------EEE--EeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEE
Confidence            8888999999999999998877776       344  444443 12233333455667889988888777 478999999


Q ss_pred             CCCCce-EEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC-CCccceEEcccCCCCCcceEEcc
Q 004971          446 SDGSNR-RQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV-DGVSAVRRLTTNGKNNAFPSVSP  520 (721)
Q Consensus       446 ~~~g~~-~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~Sp  520 (721)
                      +..... .++.   ...+..+...|||+.|+.+.       ..++..+|++-.... .....+.++..+.+......+||
T Consensus       153 l~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n-------nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP  225 (311)
T KOG0315|consen  153 LGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN-------NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP  225 (311)
T ss_pred             ccCCccccccCCCCCcceeeEEEcCCCcEEEEec-------CCccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence            976542 2232   34677899999999999885       568899998765321 11122233444556677789999


Q ss_pred             CCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE
Q 004971          521 DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK  600 (721)
Q Consensus       521 Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~  600 (721)
                      |+|+|+..+.   +..+++|+.++- .+....+..+...+...+||.||++|+.++.+.       ...+|++..++..+
T Consensus       226 d~k~lat~ss---dktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~-------~~rlW~~~~~k~v~  294 (311)
T KOG0315|consen  226 DVKYLATCSS---DKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDH-------TARLWDLSAGKEVR  294 (311)
T ss_pred             CCcEEEeecC---CceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCC-------ceeecccccCceee
Confidence            9999999987   789999999875 333566777777788999999999999999885       89999999887665


Q ss_pred             ee
Q 004971          601 LI  602 (721)
Q Consensus       601 l~  602 (721)
                      ..
T Consensus       295 qy  296 (311)
T KOG0315|consen  295 QY  296 (311)
T ss_pred             ec
Confidence            54

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.78  E-value=1.5e-17  Score=162.29  Aligned_cols=269  Identities=14%  Similarity=0.078  Sum_probs=208.9

Q ss_pred             ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCC--CCEEEEEEecCCCCeeeE
Q 004971          272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGN--NKFIAVATRRPTSSYRHI  349 (721)
Q Consensus       272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~d--G~~la~~~~~~g~~~~~l  349 (721)
                      ..||.|+.++++  ..-.|...+|.+..-.         ....+.+|...+..+.|+| .  +..|+..     +.++.+
T Consensus       181 ~~fS~ds~~laT--~swsG~~kvW~~~~~~---------~~~~l~gH~~~v~~~~fhP-~~~~~~lat~-----s~Dgtv  243 (459)
T KOG0272|consen  181 CSFSRDSKHLAT--GSWSGLVKVWSVPQCN---------LLQTLRGHTSRVGAAVFHP-VDSDLNLATA-----SADGTV  243 (459)
T ss_pred             eEeecCCCeEEE--eecCCceeEeecCCcc---------eeEEEeccccceeeEEEcc-CCCccceeee-----ccCCce
Confidence            378899887774  3337889999654432         5667778877888999999 6  4566653     355669


Q ss_pred             EEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee--cccCCCCceeC
Q 004971          350 ELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL--FRFDGSFPSFS  427 (721)
Q Consensus       350 ~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~S  427 (721)
                      .+|++.+..  .+..+++|...+..++|.|+|++|..++.+..       -  .++|+.++...+.+  .......++|.
T Consensus       244 klw~~~~e~--~l~~l~gH~~RVs~VafHPsG~~L~TasfD~t-------W--RlWD~~tk~ElL~QEGHs~~v~~iaf~  312 (459)
T KOG0272|consen  244 KLWKLSQET--PLQDLEGHLARVSRVAFHPSGKFLGTASFDST-------W--RLWDLETKSELLLQEGHSKGVFSIAFQ  312 (459)
T ss_pred             eeeccCCCc--chhhhhcchhhheeeeecCCCceeeecccccc-------h--hhcccccchhhHhhcccccccceeEec
Confidence            999987654  67777888888999999999999999888777       2  34455554332222  23445678999


Q ss_pred             cCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccce
Q 004971          428 PKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAV  503 (721)
Q Consensus       428 pDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  503 (721)
                      |||+.++..+ +.--.+||+.+|....+.   ...+..+.|||+|-.||..+       .++..+||++....     .+
T Consensus       313 ~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs-------~Dnt~kVWDLR~r~-----~l  380 (459)
T KOG0272|consen  313 PDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS-------SDNTCKVWDLRMRS-----EL  380 (459)
T ss_pred             CCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC-------CCCcEEEeeecccc-----cc
Confidence            9998777665 555689999999876655   45788999999999999886       68999999998765     56


Q ss_pred             EEcccCCCCCcceEEcc-CCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCC
Q 004971          504 RRLTTNGKNNAFPSVSP-DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG  582 (721)
Q Consensus       504 ~~l~~~~~~~~~~~~Sp-Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~  582 (721)
                      ..+..+...+..+.|+| -|++|+..+.   +..+.+|...+..+  ++.|..+...+..+..||||+.|+.++.+.   
T Consensus       381 y~ipAH~nlVS~Vk~~p~~g~fL~Tasy---D~t~kiWs~~~~~~--~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR---  452 (459)
T KOG0272|consen  381 YTIPAHSNLVSQVKYSPQEGYFLVTASY---DNTVKIWSTRTWSP--LKSLAGHEGKVISLDISPDSQAIATSSFDR---  452 (459)
T ss_pred             eecccccchhhheEecccCCeEEEEccc---CcceeeecCCCccc--chhhcCCccceEEEEeccCCceEEEeccCc---
Confidence            77777888889999999 6777777776   78899999998886  888888888899999999999999998874   


Q ss_pred             CCceeEEEEe
Q 004971          583 SGSFEMYLIH  592 (721)
Q Consensus       583 ~~~~~i~~~d  592 (721)
                          .+.+|.
T Consensus       453 ----T~KLW~  458 (459)
T KOG0272|consen  453 ----TIKLWR  458 (459)
T ss_pred             ----eeeecc
Confidence                676664

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.78  E-value=5.2e-16  Score=162.55  Aligned_cols=227  Identities=22%  Similarity=0.378  Sum_probs=147.6

Q ss_pred             cCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC---cceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCC
Q 004971          373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP---DISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGS  449 (721)
Q Consensus       373 ~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g  449 (721)
                      ..+.|||||++|+|...+....     ..+.+........   .+...       .+-.-|...   ..-.|++++++++
T Consensus       104 ~~~~WSpd~~~la~~~~d~~~v-----~~~~~~~~~~~~~~yp~~~~~-------~YPk~G~~n---p~v~l~v~~~~~~  168 (353)
T PF00930_consen  104 SAVWWSPDSKYLAFLRFDEREV-----PEYPLPDYSPPDSQYPEVESI-------RYPKAGDPN---PRVSLFVVDLASG  168 (353)
T ss_dssp             BSEEE-TTSSEEEEEEEE-TTS------EEEEEEESSSTESS-EEEEE-------E--BTTS------EEEEEEEESSST
T ss_pred             cceEECCCCCEEEEEEECCcCC-----ceEEeeccCCccccCCccccc-------ccCCCCCcC---CceEEEEEECCCC
Confidence            4678999999999998877642     2233333222211   11100       000001111   1235899999988


Q ss_pred             ceEEEe--------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc-c--cCC--CCCcce
Q 004971          450 NRRQVY--------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL-T--TNG--KNNAFP  516 (721)
Q Consensus       450 ~~~~l~--------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l-~--~~~--~~~~~~  516 (721)
                      +...+.        ...+..+.|++|++.|++....    .......++.++...+    ..+.+ .  ...  .....+
T Consensus       169 ~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n----R~q~~~~l~~~d~~tg----~~~~~~~e~~~~Wv~~~~~~  240 (353)
T PF00930_consen  169 KTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN----RDQNRLDLVLCDASTG----ETRVVLEETSDGWVDVYDPP  240 (353)
T ss_dssp             CCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEE----TTSTEEEEEEEEECTT----TCEEEEEEESSSSSSSSSEE
T ss_pred             cEEEeeeccccCCCccCcccceecCCCcEEEEEEcc----cCCCEEEEEEEECCCC----ceeEEEEecCCcceeeeccc
Confidence            864443        2345689999999966665421    2456777788877553    22222 1  111  122345


Q ss_pred             EEc-cCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCcee-eEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971          517 SVS-PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM-CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN  594 (721)
Q Consensus       517 ~~S-pDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~-~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~  594 (721)
                      .|. +++..+++.+.++|..+||+++.+++.   ++.|+.+.+.+.. +.|+++++.|+|.+....  ....+||..+++
T Consensus       241 ~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~---~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~--p~~r~lY~v~~~  315 (353)
T PF00930_consen  241 HFLGPDGNEFLWISERDGYRHLYLYDLDGGK---PRQLTSGDWEVTSILGWDEDNNRIYFTANGDN--PGERHLYRVSLD  315 (353)
T ss_dssp             EE-TTTSSEEEEEEETTSSEEEEEEETTSSE---EEESS-SSS-EEEEEEEECTSSEEEEEESSGG--TTSBEEEEEETT
T ss_pred             ccccCCCCEEEEEEEcCCCcEEEEEcccccc---eeccccCceeecccceEcCCCCEEEEEecCCC--CCceEEEEEEeC
Confidence            665 999999999999999999999999888   7899999888744 789999999999998743  367899999999


Q ss_pred             -CCceEEeeecCCCCCcC-CeEECCCCCEEEEEEecCC
Q 004971          595 -GTGLRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       595 -~~~~~~l~~~~~~~~~~-~~~~SpDG~~l~~~~~~~~  630 (721)
                       +++.++|+..   .... .+.|||||++++......+
T Consensus       316 ~~~~~~~LT~~---~~~~~~~~~Spdg~y~v~~~s~~~  350 (353)
T PF00930_consen  316 SGGEPKCLTCE---DGDHYSASFSPDGKYYVDTYSGPD  350 (353)
T ss_dssp             ETTEEEESSTT---SSTTEEEEE-TTSSEEEEEEESSS
T ss_pred             CCCCeEeccCC---CCCceEEEECCCCCEEEEEEcCCC
Confidence             8888888753   3334 8999999999988776543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=99.78  E-value=5.6e-17  Score=170.13  Aligned_cols=248  Identities=27%  Similarity=0.422  Sum_probs=185.3

Q ss_pred             CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceecccCC
Q 004971          343 TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRFDG  421 (721)
Q Consensus       343 g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~  421 (721)
                      +.....+++.|-+.-....+...   ......+.|+|+++.++|........     .++++.++..+.. .+.......
T Consensus       169 ~~~~~~l~~~D~dg~~~~~l~~~---~~~~~~p~ws~~~~~~~y~~f~~~~~-----~~i~~~~l~~g~~~~i~~~~g~~  240 (425)
T COG0823         169 GPLPYELALGDYDGYNQQKLTDS---GSLILTPAWSPDGKKLAYVSFELGGC-----PRIYYLDLNTGKRPVILNFNGNN  240 (425)
T ss_pred             CCCCceEEEEccCCcceeEeccc---CcceeccccCcCCCceEEEEEecCCC-----ceEEEEeccCCccceeeccCCcc
Confidence            33445688888763333344322   44466799999999999987666532     4688888876643 333345556


Q ss_pred             CCceeCcCCCEEEEE----eCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971          422 SFPSFSPKGDRIAFV----EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD  495 (721)
Q Consensus       422 ~~~~~SpDG~~la~~----~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~  495 (721)
                      ..++|||||++|+|.    +..+||++|+.++...+|+  .+....+.|||||++|+|+++      ..+...||.++.+
T Consensus       241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sd------r~G~p~I~~~~~~  314 (425)
T COG0823         241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSD------RGGRPQIYLYDLE  314 (425)
T ss_pred             CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeC------CCCCcceEEECCC
Confidence            779999999999999    3568999999999987777  556669999999999999985      4577799999998


Q ss_pred             CCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEE
Q 004971          496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA  575 (721)
Q Consensus       496 ~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~  575 (721)
                      +.    ..++++........+.|||||++|+|.+...+...|.+.|+.++..  .+.++ .......+.|+|+|+.|.|.
T Consensus       315 g~----~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~--~~~lt-~~~~~e~ps~~~ng~~i~~~  387 (425)
T COG0823         315 GS----QVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK--IRILT-STYLNESPSWAPNGRMIMFS  387 (425)
T ss_pred             CC----ceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc--EEEcc-ccccCCCCCcCCCCceEEEe
Confidence            86    7788888776667999999999999999544557899999987763  33444 44455789999999999999


Q ss_pred             EccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC
Q 004971          576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP  617 (721)
Q Consensus       576 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp  617 (721)
                      +...    +...++..+.++...+.+..  ..+....++|+|
T Consensus       388 s~~~----~~~~l~~~s~~g~~~~~~~~--~~~~~~~p~w~~  423 (425)
T COG0823         388 SGQG----GGSVLSLVSLDGRVSRPLPL--ADGDVRVPAWSP  423 (425)
T ss_pred             ccCC----CCceEEEeeccceeEEEEec--cCcceecccccC
Confidence            9874    56788888877765554432  335566677765

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.77  E-value=1.5e-15  Score=156.58  Aligned_cols=278  Identities=13%  Similarity=0.075  Sum_probs=177.6

Q ss_pred             eeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce-ecccCCCCc
Q 004971          346 YRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS-LFRFDGSFP  424 (721)
Q Consensus       346 ~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~  424 (721)
                      +..|++||+.+++......  . ......++|+|||+.++......        ..+++++..++..... ........+
T Consensus        10 d~~v~~~d~~t~~~~~~~~--~-~~~~~~l~~~~dg~~l~~~~~~~--------~~v~~~d~~~~~~~~~~~~~~~~~~~   78 (300)
T TIGR03866        10 DNTISVIDTATLEVTRTFP--V-GQRPRGITLSKDGKLLYVCASDS--------DTIQVIDLATGEVIGTLPSGPDPELF   78 (300)
T ss_pred             CCEEEEEECCCCceEEEEE--C-CCCCCceEECCCCCEEEEEECCC--------CeEEEEECCCCcEEEeccCCCCccEE
Confidence            4469999999887544332  1 23356789999999876654322        2466666655421111 111223457


Q ss_pred             eeCcCCCEEEEEe--CCcEEEEECCCCceEE-Ee-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc
Q 004971          425 SFSPKGDRIAFVE--FPGVYVVNSDGSNRRQ-VY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV  500 (721)
Q Consensus       425 ~~SpDG~~la~~~--~~~l~v~d~~~g~~~~-l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~  500 (721)
                      .|+|||+.+++..  ++.|++||+.+++... +. ...+..+.|+|||+.+++...      ....+.+|  +..+.   
T Consensus        79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~------~~~~~~~~--d~~~~---  147 (300)
T TIGR03866        79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSE------TTNMAHFI--DTKTY---  147 (300)
T ss_pred             EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEec------CCCeEEEE--eCCCC---
Confidence            8999999887663  6789999998765432 22 234678999999999998762      11223333  33332   


Q ss_pred             cceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC-------CcCceeeEEccCCCEEE
Q 004971          501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-------PWSDTMCNWSPDGEWIA  573 (721)
Q Consensus       501 ~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~-------~~~~~~~~~SpDG~~l~  573 (721)
                      .....+. .......++|+|||++|++.+..  ...|++||+.+++.  +..+...       ......++|+|||+.++
T Consensus       148 ~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--~~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~  222 (300)
T TIGR03866       148 EIVDNVL-VDQRPRFAEFTADGKELWVSSEI--GGTVSVIDVATRKV--IKKITFEIPGVHPEAVQPVGIKLTKDGKTAF  222 (300)
T ss_pred             eEEEEEE-cCCCccEEEECCCCCEEEEEcCC--CCEEEEEEcCccee--eeeeeecccccccccCCccceEECCCCCEEE
Confidence            1122222 22345668999999999876543  45799999998864  3333211       11224578999999877


Q ss_pred             EEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEc
Q 004971          574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL  653 (721)
Q Consensus       574 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~  653 (721)
                      +.....      ..|.+||+.+++......  ....+..+.|+|||++|+......+                .|.+||+
T Consensus       223 ~~~~~~------~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~----------------~i~v~d~  278 (300)
T TIGR03866       223 VALGPA------NRVAVVDAKTYEVLDYLL--VGQRVWQLAFTPDEKYLLTTNGVSN----------------DVSVIDV  278 (300)
T ss_pred             EEcCCC------CeEEEEECCCCcEEEEEE--eCCCcceEEECCCCCEEEEEcCCCC----------------eEEEEEC
Confidence            655432      269999998887665433  3346778999999999887654443                4999999


Q ss_pred             CCCCe-EEeccCCCCCCCceecC
Q 004971          654 DGSDL-KRLTQNSFEDGTPAWGP  675 (721)
Q Consensus       654 ~~~~~-~~lt~~~~~~~~~~~sp  675 (721)
                      ++++. +++. .+...+..+++|
T Consensus       279 ~~~~~~~~~~-~~~~~~~~~~~~  300 (300)
T TIGR03866       279 AALKVIKSIK-VGRLPWGVVVRP  300 (300)
T ss_pred             CCCcEEEEEE-cccccceeEeCC
Confidence            99885 4554 344556666554

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.76  E-value=4.8e-16  Score=144.90  Aligned_cols=278  Identities=12%  Similarity=0.054  Sum_probs=202.4

Q ss_pred             EEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971          313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG  392 (721)
Q Consensus       313 ~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~  392 (721)
                      +.+.+|...+..+.|++ |.++|+.++     .++.|.+||.-|......  ..-+...+...+|+|.|+.++....++.
T Consensus        49 r~LkGH~~Ki~~~~ws~-Dsr~ivSaS-----qDGklIvWDs~TtnK~ha--ipl~s~WVMtCA~sPSg~~VAcGGLdN~  120 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWST-DSRRIVSAS-----QDGKLIVWDSFTTNKVHA--IPLPSSWVMTCAYSPSGNFVACGGLDNK  120 (343)
T ss_pred             EEecccccceeeeEecC-CcCeEEeec-----cCCeEEEEEcccccceeE--EecCceeEEEEEECCCCCeEEecCcCce
Confidence            44566777888999999 999998865     445699999987653222  2334677889999999999987655554


Q ss_pred             CCCCCCcceeEEEeccCCC--Ccc-eecccCC---CCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe---ecCceeeE
Q 004971          393 STREDGNNQLLLENIKSPL--PDI-SLFRFDG---SFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY---FKNAFSTV  463 (721)
Q Consensus       393 ~~~~~~~~~l~~~~~~~~~--~~~-~~~~~~~---~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~---~~~~~~~~  463 (721)
                             -.+|-...+...  ..+ ..+....   ....|-+|++.|--.++....+||+++|+..+.+   .+.+..+.
T Consensus       121 -------Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sls  193 (343)
T KOG0286|consen  121 -------CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLS  193 (343)
T ss_pred             -------eEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEe
Confidence                   334433322111  111 1111111   2246667776555457889999999999877776   56788999


Q ss_pred             EcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEEC
Q 004971          464 WDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA  542 (721)
Q Consensus       464 ~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~  542 (721)
                      ++| +++.++..+       -+....||++....     ..+.+..+...+..+.|.|+|..++..++   +....+||+
T Consensus       194 l~p~~~ntFvSg~-------cD~~aklWD~R~~~-----c~qtF~ghesDINsv~ffP~G~afatGSD---D~tcRlyDl  258 (343)
T KOG0286|consen  194 LSPSDGNTFVSGG-------CDKSAKLWDVRSGQ-----CVQTFEGHESDINSVRFFPSGDAFATGSD---DATCRLYDL  258 (343)
T ss_pred             cCCCCCCeEEecc-------cccceeeeeccCcc-----eeEeecccccccceEEEccCCCeeeecCC---CceeEEEee
Confidence            999 888877664       57889999998754     77788888888899999999999999887   788999999


Q ss_pred             CCCcccceEECcC--CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCC
Q 004971          543 EGGEGYGLHRLTE--GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK  620 (721)
Q Consensus       543 ~~g~~~~~~~l~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~  620 (721)
                      .....  +.....  ....+++++||..|+.|+.+..+.       .+.+||.-.++..-+.. +|...+..+..+|||.
T Consensus       259 RaD~~--~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~-------~c~vWDtlk~e~vg~L~-GHeNRvScl~~s~DG~  328 (343)
T KOG0286|consen  259 RADQE--LAVYSHDSIICGITSVAFSKSGRLLFAGYDDF-------TCNVWDTLKGERVGVLA-GHENRVSCLGVSPDGM  328 (343)
T ss_pred             cCCcE--EeeeccCcccCCceeEEEcccccEEEeeecCC-------ceeEeeccccceEEEee-ccCCeeEEEEECCCCc
Confidence            87663  332222  234568899999999777766664       89999987776555544 4889999999999999


Q ss_pred             EEEEEEecCC
Q 004971          621 SIVFTSDYGG  630 (721)
Q Consensus       621 ~l~~~~~~~~  630 (721)
                      -|+..+-+..
T Consensus       329 av~TgSWDs~  338 (343)
T KOG0286|consen  329 AVATGSWDST  338 (343)
T ss_pred             EEEecchhHh
Confidence            8887776653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.75  E-value=5.1e-16  Score=157.82  Aligned_cols=271  Identities=17%  Similarity=0.174  Sum_probs=192.2

Q ss_pred             CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCC
Q 004971          317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRE  396 (721)
Q Consensus       317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~  396 (721)
                      .+...+..+.|+| ++++|++..     .+..+.+|++.+++....  ...+...+..+.|+|+++.|++...++.    
T Consensus         7 ~h~~~i~~~~~~~-~~~~l~~~~-----~~g~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~~~----   74 (289)
T cd00200           7 GHTGGVTCVAFSP-DGKLLATGS-----GDGTIKVWDLETGELLRT--LKGHTGPVRDVAASADGTYLASGSSDKT----   74 (289)
T ss_pred             ccCCCEEEEEEcC-CCCEEEEee-----cCcEEEEEEeeCCCcEEE--EecCCcceeEEEECCCCCEEEEEcCCCe----
Confidence            4445677889999 999988854     245699999988763222  2334455568899999988888765443    


Q ss_pred             CCcceeEEEeccCCC--CcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCe
Q 004971          397 DGNNQLLLENIKSPL--PDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREA  470 (721)
Q Consensus       397 ~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~  470 (721)
                           +.++++....  ..+.........+.|+++++.++... ++.+.+|++..++.....   ...+..+.|+|+++.
T Consensus        75 -----i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  149 (289)
T cd00200          75 -----IRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF  149 (289)
T ss_pred             -----EEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCE
Confidence                 5666665431  11221222345578999987777776 899999999866544333   345789999999888


Q ss_pred             EEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce
Q 004971          471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL  550 (721)
Q Consensus       471 la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~  550 (721)
                      ++...       .++.+.+|++....     ....+..+...+..+.|+|+++.|++.+.   +..|++||..+++.  +
T Consensus       150 l~~~~-------~~~~i~i~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~d~~~~~~--~  212 (289)
T cd00200         150 VASSS-------QDGTIKLWDLRTGK-----CVATLTGHTGEVNSVAFSPDGEKLLSSSS---DGTIKLWDLSTGKC--L  212 (289)
T ss_pred             EEEEc-------CCCcEEEEEccccc-----cceeEecCccccceEEECCCcCEEEEecC---CCcEEEEECCCCce--e
Confidence            77764       36788888876432     34445555557788999999999998887   67899999987764  4


Q ss_pred             EECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       551 ~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      ..+..+...+..+.|+|++..++....++       .|++|++.+++...... .+...+..+.|+|++++|+..+.++
T Consensus       213 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~  283 (289)
T cd00200         213 GTLRGHENGVNSVAFSPDGYLLASGSEDG-------TIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGSADG  283 (289)
T ss_pred             cchhhcCCceEEEEEcCCCcEEEEEcCCC-------cEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEecCCC
Confidence            44434555678899999977776666453       79999998776555544 2566788999999999988777655

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=99.74  E-value=4.1e-15  Score=148.92  Aligned_cols=305  Identities=21%  Similarity=0.322  Sum_probs=168.9

Q ss_pred             ceEEeCCCC-----CcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEE
Q 004971          311 SIQRVTPPG-----LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVG  385 (721)
Q Consensus       311 ~~~~~~~~~-----~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~  385 (721)
                      +..+++...     ....+.+|.+ ||++|+|.+...+  ...++++|+++++.++|+...  .....+..++|+++.|+
T Consensus        22 ~VtrLT~~~~~~h~~YF~~~~ft~-dG~kllF~s~~dg--~~nly~lDL~t~~i~QLTdg~--g~~~~g~~~s~~~~~~~   96 (386)
T PF14583_consen   22 RVTRLTPPDGHSHRLYFYQNCFTD-DGRKLLFASDFDG--NRNLYLLDLATGEITQLTDGP--GDNTFGGFLSPDDRALY   96 (386)
T ss_dssp             EEEE-S-TTS-EE---TTS--B-T-TS-EEEEEE-TTS--S-EEEEEETTT-EEEE---SS---B-TTT-EE-TTSSEEE
T ss_pred             eEEEecCCCCcccceeecCCCcCC-CCCEEEEEeccCC--CcceEEEEcccCEEEECccCC--CCCccceEEecCCCeEE
Confidence            566666553     3456778999 9999999877654  456999999999999998643  23344688999999999


Q ss_pred             EEEeeCCCCCCCCcceeEEEeccCCCCc-ceecccCC-CCcee--CcCCCEEEEE-----------------------eC
Q 004971          386 YHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDG-SFPSF--SPKGDRIAFV-----------------------EF  438 (721)
Q Consensus       386 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~-~~~~~--SpDG~~la~~-----------------------~~  438 (721)
                      |....         ..++..++.+.... +...+..- ....|  ..|++.++.+                       ..
T Consensus        97 Yv~~~---------~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~  167 (386)
T PF14583_consen   97 YVKNG---------RSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPH  167 (386)
T ss_dssp             EEETT---------TEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---
T ss_pred             EEECC---------CeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCC
Confidence            86532         24677777766432 22111111 11234  5677777665                       12


Q ss_pred             CcEEEEECCCCceEEEe--ecCceeeEEcCC-CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC--CCC
Q 004971          439 PGVYVVNSDGSNRRQVY--FKNAFSTVWDPV-REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG--KNN  513 (721)
Q Consensus       439 ~~l~v~d~~~g~~~~l~--~~~~~~~~~spd-g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~--~~~  513 (721)
                      ..|+.+|+.+|+.+.+.  ......+.+||. ...|+|+-.++.   +.-..+||.++.+++    ..+.+....  ...
T Consensus       168 ~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw---~~Vd~RiW~i~~dg~----~~~~v~~~~~~e~~  240 (386)
T PF14583_consen  168 CRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPW---DLVDQRIWTINTDGS----NVKKVHRRMEGESV  240 (386)
T ss_dssp             EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-T---TTSS-SEEEEETTS-------EESS---TTEEE
T ss_pred             ceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCc---ceeceEEEEEEcCCC----cceeeecCCCCccc
Confidence            35899999999988887  456689999995 556667665542   222457999999886    666665543  345


Q ss_pred             cceEEccCCCEEEEEEeeCC--ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCC---------C
Q 004971          514 AFPSVSPDGKWIVFRSTRTG--YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP---------G  582 (721)
Q Consensus       514 ~~~~~SpDg~~l~~~s~~~g--~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~---------~  582 (721)
                      .+--|+|||+.|.|.+...+  ..-|+-+|+++++.   +.+...+. ..++.-|+||+.++--..+...         .
T Consensus       241 gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~---~~~~~~p~-~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~  316 (386)
T PF14583_consen  241 GHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER---RRLMEMPW-CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKI  316 (386)
T ss_dssp             EEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E---EEEEEE-S-EEEEEE-TTSSEEEEEE---------------
T ss_pred             ccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc---eEEEeCCc-eeeeEEcCCCCEEEecCCCCCcccccccccee
Confidence            56789999999999876443  44688889998873   44444433 3577889999966543332110         1


Q ss_pred             CCceeEEEEecCCCceEEeeecCC-------C--CCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEc
Q 004971          583 SGSFEMYLIHPNGTGLRKLIQSGS-------A--GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL  653 (721)
Q Consensus       583 ~~~~~i~~~d~~~~~~~~l~~~~~-------~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~  653 (721)
                      ....-||++++..+....+.....       .  ..-.+|.|||||++|+|.++..+.+              .||++++
T Consensus       317 ~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~--------------~vY~v~i  382 (386)
T PF14583_consen  317 ENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPP--------------AVYLVEI  382 (386)
T ss_dssp             ----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS---------------EEEEEE-
T ss_pred             cCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCc--------------cEEEEeC
Confidence            123478889998887766654210       0  1234689999999999999998754              7999886


Q ss_pred             C
Q 004971          654 D  654 (721)
Q Consensus       654 ~  654 (721)
                      .
T Consensus       383 ~  383 (386)
T PF14583_consen  383 P  383 (386)
T ss_dssp             -
T ss_pred             c
Confidence            4

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.72  E-value=1.7e-15  Score=149.94  Aligned_cols=266  Identities=13%  Similarity=0.127  Sum_probs=198.8

Q ss_pred             CcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971          320 LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN  399 (721)
Q Consensus       320 ~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~  399 (721)
                      .++..++|+- +|..|++..     .++.+++|+...+.   +..+..|.+.+..+.|+.+|.+|+....++.       
T Consensus       236 kdVT~L~Wn~-~G~~LatG~-----~~G~~riw~~~G~l---~~tl~~HkgPI~slKWnk~G~yilS~~vD~t-------  299 (524)
T KOG0273|consen  236 KDVTSLDWNN-DGTLLATGS-----EDGEARIWNKDGNL---ISTLGQHKGPIFSLKWNKKGTYILSGGVDGT-------  299 (524)
T ss_pred             CCcceEEecC-CCCeEEEee-----cCcEEEEEecCchh---hhhhhccCCceEEEEEcCCCCEEEeccCCcc-------
Confidence            4577899999 999999954     55679999987553   3344556788889999999999998776665       


Q ss_pred             ceeEEEeccCCC--CcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEE
Q 004971          400 NQLLLENIKSPL--PDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYT  474 (721)
Q Consensus       400 ~~l~~~~~~~~~--~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~  474 (721)
                        +.+++...+.  ..+.......-.+.|-.+........++.|+++.+....+..-.   .+.+..+.|.|.|..|+.+
T Consensus       300 --tilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~  377 (524)
T KOG0273|consen  300 --TILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASC  377 (524)
T ss_pred             --EEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEe
Confidence              3444443331  12222222223356655443333335778999988766654333   6778899999999999998


Q ss_pred             ecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCC---------EEEEEEeeCCceeEEEEECCCC
Q 004971          475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGK---------WIVFRSTRTGYKNLYIMDAEGG  545 (721)
Q Consensus       475 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~---------~l~~~s~~~g~~~l~~~d~~~g  545 (721)
                      +       ++.+++||.+....     ....|..+...++...|||+|.         .|+..+.   +..+.+||+..|
T Consensus       378 S-------dD~TlkiWs~~~~~-----~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~---dstV~lwdv~~g  442 (524)
T KOG0273|consen  378 S-------DDGTLKIWSMGQSN-----SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF---DSTVKLWDVESG  442 (524)
T ss_pred             c-------CCCeeEeeecCCCc-----chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec---CCeEEEEEccCC
Confidence            7       68999999987654     4566777777788889999765         4565555   778999999999


Q ss_pred             cccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEE
Q 004971          546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT  625 (721)
Q Consensus       546 ~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~  625 (721)
                      .+  +..++.+...+..++|||||++||+++.++       .|.+|+..+++..+-..  ..+.+..+.|+-+|.+|...
T Consensus       443 v~--i~~f~kH~~pVysvafS~~g~ylAsGs~dg-------~V~iws~~~~~l~~s~~--~~~~Ifel~Wn~~G~kl~~~  511 (524)
T KOG0273|consen  443 VP--IHTLMKHQEPVYSVAFSPNGRYLASGSLDG-------CVHIWSTKTGKLVKSYQ--GTGGIFELCWNAAGDKLGAC  511 (524)
T ss_pred             ce--eEeeccCCCceEEEEecCCCcEEEecCCCC-------eeEeccccchheeEeec--CCCeEEEEEEcCCCCEEEEE
Confidence            86  788888888899999999999999999886       89999999988777654  45667899999999998776


Q ss_pred             EecC
Q 004971          626 SDYG  629 (721)
Q Consensus       626 ~~~~  629 (721)
                      ..++
T Consensus       512 ~sd~  515 (524)
T KOG0273|consen  512 ASDG  515 (524)
T ss_pred             ecCC
Confidence            6655

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=99.72  E-value=7.4e-15  Score=147.14  Aligned_cols=348  Identities=16%  Similarity=0.233  Sum_probs=181.2

Q ss_pred             cceeEEeccCCCCCCCCceeeecccee-----eeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeec
Q 004971           42 YAFDIYTLPISDRPTTANEIKITDGES-----VNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERN  116 (721)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (721)
                      .+..-|.-+..+    .+.+|||....     +-++..|.+||+                           +|+|.+.++
T Consensus         9 ~~~~~~~D~~TG----~~VtrLT~~~~~~h~~YF~~~~ft~dG~---------------------------kllF~s~~d   57 (386)
T PF14583_consen    9 LEFKTWIDPDTG----HRVTRLTPPDGHSHRLYFYQNCFTDDGR---------------------------KLLFASDFD   57 (386)
T ss_dssp             --EEEEE-TTT------EEEE-S-TTS-EE---TTS--B-TTS----------------------------EEEEEE-TT
T ss_pred             cceeEEeCCCCC----ceEEEecCCCCcccceeecCCCcCCCCC---------------------------EEEEEeccC
Confidence            345678877766    88899997655     456888999999                           999999999


Q ss_pred             CCceeEEeeeecCcccccccchhhhccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccc
Q 004971          117 GTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWA  196 (721)
Q Consensus       117 g~~~v~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~  196 (721)
                      |..++|.+++.+++    .+|  ||.+.... ....           .+     +|  +++.++|+.+..          
T Consensus        58 g~~nly~lDL~t~~----i~Q--LTdg~g~~-~~g~-----------~~-----s~--~~~~~~Yv~~~~----------  102 (386)
T PF14583_consen   58 GNRNLYLLDLATGE----ITQ--LTDGPGDN-TFGG-----------FL-----SP--DDRALYYVKNGR----------  102 (386)
T ss_dssp             SS-EEEEEETTT-E----EEE-----SS-B--TTT------------EE------T--TSSEEEEEETTT----------
T ss_pred             CCcceEEEEcccCE----EEE--CccCCCCC-ccce-----------EE-----ec--CCCeEEEEECCC----------
Confidence            99999999999988    777  98322101 1101           34     88  899998886542          


Q ss_pred             eEEEEeCCCcceEeecCCCC--Ccccccc--CCCCCEEEEEecCCCCCC------c----ccceeeeeEEEEEcCCCcee
Q 004971          197 AVYSTELKTGLTRRLTPYGV--ADFSPAV--SPSGKYTAVASYGNKGWD------G----EVEMLSTDIYIFLTRDGTQR  262 (721)
Q Consensus       197 ~l~~v~~~~g~~~~lt~~~~--~~~~p~~--SPDG~~la~~~~~~~~w~------~----~~~~~~~~i~~~d~~~g~~~  262 (721)
                      .|+.+++++.+.+.+...+.  ..+. .|  ..|++.++........|+      +    +.-.....|+.+++.+|+.+
T Consensus       103 ~l~~vdL~T~e~~~vy~~p~~~~g~g-t~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~  181 (386)
T PF14583_consen  103 SLRRVDLDTLEERVVYEVPDDWKGYG-TWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK  181 (386)
T ss_dssp             EEEEEETTT--EEEEEE--TTEEEEE-EEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE
T ss_pred             eEEEEECCcCcEEEEEECCccccccc-ceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee
Confidence            89999999998877643322  2222 33  458888876543222232      1    11234578999999999998


Q ss_pred             EEEeccC--CcceeccC--CeEEEEeccCCCCc-EEEEEEecCCCcceeccccceEEeCCC--CCcccCceeecCCCCEE
Q 004971          263 VKIVENG--GWPCWVDE--STLFFHRKSEEDDW-ISVYKVILPQTGLVSTESVSIQRVTPP--GLHAFTPATSPGNNKFI  335 (721)
Q Consensus       263 ~l~~~~~--~~~~ws~d--g~l~~~~~~~~~g~-~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sp~dG~~l  335 (721)
                      .+.....  +++.|||.  +.+.|......+.. ..||.+...++        ..+.+...  ...+..--|+| ||..|
T Consensus       182 ~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~--------~~~~v~~~~~~e~~gHEfw~~-DG~~i  252 (386)
T PF14583_consen  182 VVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS--------NVKKVHRRMEGESVGHEFWVP-DGSTI  252 (386)
T ss_dssp             EEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----------EESS---TTEEEEEEEE-T-TSS-E
T ss_pred             EEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC--------cceeeecCCCCcccccccccC-CCCEE
Confidence            8876554  57889975  23555433333333 37886654443        34444333  33455677999 99999


Q ss_pred             EEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce
Q 004971          336 AVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS  415 (721)
Q Consensus       336 a~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  415 (721)
                      .|.....++....|.-+|+++++.+.+...    .....+..++||+.++-  +..+..       ..+.          
T Consensus       253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~----p~~~H~~ss~Dg~L~vG--DG~d~p-------~~v~----------  309 (386)
T PF14583_consen  253 WYDSYTPGGQDFWIAGYDPDTGERRRLMEM----PWCSHFMSSPDGKLFVG--DGGDAP-------VDVA----------  309 (386)
T ss_dssp             EEEEEETTT--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEE--EE-------------------------
T ss_pred             EEEeecCCCCceEEEeeCCCCCCceEEEeC----CceeeeEEcCCCCEEEe--cCCCCC-------cccc----------
Confidence            998877777778899999999987665432    13446777888876542  222100       0000          


Q ss_pred             ecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971          416 LFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD  495 (721)
Q Consensus       416 ~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~  495 (721)
                                . ++|..+  -.+.-|+++++..+....+....         .                           
T Consensus       310 ----------~-~~~~~~--~~~p~i~~~~~~~~~~~~l~~h~---------~---------------------------  340 (386)
T PF14583_consen  310 ----------D-AGGYKI--ENDPWIYLFDVEAGRFRKLARHD---------T---------------------------  340 (386)
T ss_dssp             ------------------------EEEEEETTTTEEEEEEE---------------------------------------
T ss_pred             ----------c-ccccee--cCCcEEEEeccccCceeeeeecc---------C---------------------------
Confidence                      0 111111  12334677777766554443110         0                           


Q ss_pred             CCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECC
Q 004971          496 DVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE  543 (721)
Q Consensus       496 ~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~  543 (721)
                            ....+..+. ....+|.|||||++|+|.++..|...||++++.
T Consensus       341 ------sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~  383 (386)
T PF14583_consen  341 ------SWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIP  383 (386)
T ss_dssp             ----------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred             ------cceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCc
Confidence                  000111111 123568999999999999999999999999875

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.72  E-value=2.3e-14  Score=147.62  Aligned_cols=256  Identities=13%  Similarity=0.100  Sum_probs=164.4

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      ....++|+| ||+.++....    .+..|++||+.+++......  . ......+.|+|+|+.++......        .
T Consensus        32 ~~~~l~~~~-dg~~l~~~~~----~~~~v~~~d~~~~~~~~~~~--~-~~~~~~~~~~~~g~~l~~~~~~~--------~   95 (300)
T TIGR03866        32 RPRGITLSK-DGKLLYVCAS----DSDTIQVIDLATGEVIGTLP--S-GPDPELFALHPNGKILYIANEDD--------N   95 (300)
T ss_pred             CCCceEECC-CCCEEEEEEC----CCCeEEEEECCCCcEEEecc--C-CCCccEEEECCCCCEEEEEcCCC--------C
Confidence            356789999 9997765432    23459999999887533221  1 22245678999999887654322        2


Q ss_pred             eeEEEeccCCCCcceec--ccCCCCceeCcCCCEEEEEeC--CcEEEEECCCCceEE-Ee-ecCceeeEEcCCCCeEEEE
Q 004971          401 QLLLENIKSPLPDISLF--RFDGSFPSFSPKGDRIAFVEF--PGVYVVNSDGSNRRQ-VY-FKNAFSTVWDPVREAVVYT  474 (721)
Q Consensus       401 ~l~~~~~~~~~~~~~~~--~~~~~~~~~SpDG~~la~~~~--~~l~v~d~~~g~~~~-l~-~~~~~~~~~spdg~~la~~  474 (721)
                      .+.++++.... .+...  ......++|+|||+.+++...  ..++.+|..+++... +. ......+.|+|||++|++.
T Consensus        96 ~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  174 (300)
T TIGR03866        96 LVTVIDIETRK-VLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVS  174 (300)
T ss_pred             eEEEEECCCCe-EEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEE
Confidence            46677765432 11111  122455799999999888753  346778988776433 22 3455678999999999876


Q ss_pred             ecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC-------CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc
Q 004971          475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN-------GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG  547 (721)
Q Consensus       475 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~  547 (721)
                      +.      .++.+.+|++....     ....+...       ......++|+|||+++++....  ...|.+||+.+++.
T Consensus       175 ~~------~~~~v~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~--~~~i~v~d~~~~~~  241 (300)
T TIGR03866       175 SE------IGGTVSVIDVATRK-----VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP--ANRVAVVDAKTYEV  241 (300)
T ss_pred             cC------CCCEEEEEEcCcce-----eeeeeeecccccccccCCccceEECCCCCEEEEEcCC--CCeEEEEECCCCcE
Confidence            52      35677887775432     22333211       1123457899999987765432  45799999988774


Q ss_pred             cceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC
Q 004971          548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP  617 (721)
Q Consensus       548 ~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp  617 (721)
                        ...+..+ ..+..++|+|||++|+.+....      ..|.+||+.+++......  .....+.++++|
T Consensus       242 --~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~------~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~  300 (300)
T TIGR03866       242 --LDYLLVG-QRVWQLAFTPDEKYLLTTNGVS------NDVSVIDVAALKVIKSIK--VGRLPWGVVVRP  300 (300)
T ss_pred             --EEEEEeC-CCcceEEECCCCCEEEEEcCCC------CeEEEEECCCCcEEEEEE--cccccceeEeCC
Confidence              3333222 3457899999999988765422      279999999988655444  234556677665

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.70  E-value=4.3e-15  Score=137.81  Aligned_cols=276  Identities=15%  Similarity=0.108  Sum_probs=188.7

Q ss_pred             CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce---EEeecccCCCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971          317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF---IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS  393 (721)
Q Consensus       317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~---~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~  393 (721)
                      .+...+..++..+ .+..+++...+    +..+.+|++.....   ..+..+.+|...+..+..|+||.+.+..+.++. 
T Consensus        13 gh~d~Vt~la~~~-~~~~~l~sasr----Dk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~-   86 (315)
T KOG0279|consen   13 GHTDWVTALAIKI-KNSDILVSASR----DKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT-   86 (315)
T ss_pred             CCCceEEEEEeec-CCCceEEEccc----ceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce-
Confidence            3444556666667 66666664433    34578888765422   124445566777889999999998887776665 


Q ss_pred             CCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe----ecCceeeEEcC
Q 004971          394 TREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY----FKNAFSTVWDP  466 (721)
Q Consensus       394 ~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~----~~~~~~~~~sp  466 (721)
                              +.++|+.++..  ++......+-.+++|+|.++|+..+ +..|.+|+..++-...+.    .+.+..+.|+|
T Consensus        87 --------lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP  158 (315)
T KOG0279|consen   87 --------LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSP  158 (315)
T ss_pred             --------EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcC
Confidence                    56777776532  2222334445679999999998884 788999999887766665    24678999999


Q ss_pred             CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971          467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE  546 (721)
Q Consensus       467 dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~  546 (721)
                      .....++++.     ..++.+++|+++.-.     ....+..+.+....+++||||..++....   +..+++||++.++
T Consensus       159 ~~~~p~Ivs~-----s~DktvKvWnl~~~~-----l~~~~~gh~~~v~t~~vSpDGslcasGgk---dg~~~LwdL~~~k  225 (315)
T KOG0279|consen  159 NESNPIIVSA-----SWDKTVKVWNLRNCQ-----LRTTFIGHSGYVNTVTVSPDGSLCASGGK---DGEAMLWDLNEGK  225 (315)
T ss_pred             CCCCcEEEEc-----cCCceEEEEccCCcc-----hhhccccccccEEEEEECCCCCEEecCCC---CceEEEEEccCCc
Confidence            9644444332     368999999987532     23344455678888999999998887655   7899999999887


Q ss_pred             ccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee-cC--C-----CCCcCCeEECCC
Q 004971          547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ-SG--S-----AGRANHPYFSPD  618 (721)
Q Consensus       547 ~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~--~-----~~~~~~~~~SpD  618 (721)
                      .  +..+ .+...+..++|+|+-=+|+.+...        .|.+||++++....-.. ..  .     ...-...+||+|
T Consensus       226 ~--lysl-~a~~~v~sl~fspnrywL~~at~~--------sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~d  294 (315)
T KOG0279|consen  226 N--LYSL-EAFDIVNSLCFSPNRYWLCAATAT--------SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSAD  294 (315)
T ss_pred             e--eEec-cCCCeEeeEEecCCceeEeeccCC--------ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCC
Confidence            4  3333 344567899999997777666554        69999999885432211 10  1     111235799999


Q ss_pred             CCEEEEEEecCC
Q 004971          619 GKSIVFTSDYGG  630 (721)
Q Consensus       619 G~~l~~~~~~~~  630 (721)
                      |..|+....++.
T Consensus       295 G~tLf~g~td~~  306 (315)
T KOG0279|consen  295 GQTLFAGYTDNV  306 (315)
T ss_pred             CcEEEeeecCCc
Confidence            999987666554

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.70  E-value=4.9e-15  Score=146.75  Aligned_cols=302  Identities=15%  Similarity=0.108  Sum_probs=214.2

Q ss_pred             CCCCcccCceeecCCCC-EEEEEEecCCCCeeeEEEEECCC--CceEE-e-----e----cccCCCCcccCcEEcCCCCE
Q 004971          317 PPGLHAFTPATSPGNNK-FIAVATRRPTSSYRHIELFDLVK--NKFIE-L-----T----RFVSPKTHHLNPFISPDSSR  383 (721)
Q Consensus       317 ~~~~~~~~~~~sp~dG~-~la~~~~~~g~~~~~l~l~dl~t--g~~~~-l-----~----~~~~~~~~~~~~~~Spdg~~  383 (721)
                      .+.-.+...+|.| -.+ .+++     ++.+...++|++..  ..... +     .    ........+..++|+.+|..
T Consensus       176 ~~~~~V~~~~WnP-~~~~llas-----g~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~  249 (524)
T KOG0273|consen  176 RHESEVFICAWNP-LRDGLLAS-----GSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL  249 (524)
T ss_pred             cCCCceEEEecCc-hhhhhhhc-----cCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence            3444556677888 444 4444     23344467777763  11101 0     0    00111345788999999999


Q ss_pred             EEEEEeeCCCCCCCCcceeEEEeccCC-CCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecC
Q 004971          384 VGYHKCRGGSTREDGNNQLLLENIKSP-LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKN  458 (721)
Q Consensus       384 l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~  458 (721)
                      |++...++.         +.+++..+. ...+.........+.|+.+|.+|+..+ ++.+.+||..+|+..+.+   ...
T Consensus       250 LatG~~~G~---------~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~  320 (524)
T KOG0273|consen  250 LATGSEDGE---------ARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP  320 (524)
T ss_pred             EEEeecCcE---------EEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC
Confidence            999888776         334444443 223334455566789999999999885 889999999999876665   333


Q ss_pred             ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEE
Q 004971          459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY  538 (721)
Q Consensus       459 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~  538 (721)
                      ..++.|-.+.++...        ..++.+++|.++.+.     ....+..|.+.+..+.|.|.|+.|+..+.   +..|.
T Consensus       321 ~lDVdW~~~~~F~ts--------~td~~i~V~kv~~~~-----P~~t~~GH~g~V~alk~n~tg~LLaS~Sd---D~Tlk  384 (524)
T KOG0273|consen  321 ALDVDWQSNDEFATS--------STDGCIHVCKVGEDR-----PVKTFIGHHGEVNALKWNPTGSLLASCSD---DGTLK  384 (524)
T ss_pred             ccceEEecCceEeec--------CCCceEEEEEecCCC-----cceeeecccCceEEEEECCCCceEEEecC---CCeeE
Confidence            356888766544332        246789999998776     56677778889999999999999999888   78999


Q ss_pred             EEECCCCcccceEECcCCCcCceeeEEccCCC---------EEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCC
Q 004971          539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE---------WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR  609 (721)
Q Consensus       539 ~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~---------~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~  609 (721)
                      +|+...+..  ...+..+...+..+.|||+|.         .|+.++.+.       .|.+||+..+.+...+. .|...
T Consensus       385 iWs~~~~~~--~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds-------tV~lwdv~~gv~i~~f~-kH~~p  454 (524)
T KOG0273|consen  385 IWSMGQSNS--VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS-------TVKLWDVESGVPIHTLM-KHQEP  454 (524)
T ss_pred             eeecCCCcc--hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC-------eEEEEEccCCceeEeec-cCCCc
Confidence            998654443  566767766678889999764         566666553       89999999987665543 27788


Q ss_pred             cCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971          610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       610 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~  676 (721)
                      +.+++|||||++|++.+.++.                 |.+|+.+++++.+-....+.+...+|+..
T Consensus       455 VysvafS~~g~ylAsGs~dg~-----------------V~iws~~~~~l~~s~~~~~~Ifel~Wn~~  504 (524)
T KOG0273|consen  455 VYSVAFSPNGRYLASGSLDGC-----------------VHIWSTKTGKLVKSYQGTGGIFELCWNAA  504 (524)
T ss_pred             eEEEEecCCCcEEEecCCCCe-----------------eEeccccchheeEeecCCCeEEEEEEcCC
Confidence            999999999999998777764                 88999999988766665666788888764

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.69  E-value=2e-15  Score=142.82  Aligned_cols=351  Identities=16%  Similarity=0.162  Sum_probs=211.8

Q ss_pred             cccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEe--ccCCcceeccCCe-EEEEeccCCCCcEEEEEE
Q 004971          221 PAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIV--ENGGWPCWVDEST-LFFHRKSEEDDWISVYKV  297 (721)
Q Consensus       221 p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~--~~~~~~~ws~dg~-l~~~~~~~~~g~~~l~~~  297 (721)
                      ..|||+|++||..+             ...+.+.|..+-+..++..  +.-....|..|+- ++.  ....++.+++|.+
T Consensus        14 c~fSp~g~yiAs~~-------------~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC--~~yk~~~vqvwsl   78 (447)
T KOG4497|consen   14 CSFSPCGNYIASLS-------------RYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILC--VAYKDPKVQVWSL   78 (447)
T ss_pred             eeECCCCCeeeeee-------------eeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeee--eeeccceEEEEEe
Confidence            37999999999976             3466676665555444331  2223568998865 333  2223778899976


Q ss_pred             ecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEE
Q 004971          298 ILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI  377 (721)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~  377 (721)
                      ..++         -.-.+.........+.||| ||++|...+.    -+.+|.+|.+.+.+...+..   +.......+|
T Consensus        79 ~Qpe---------w~ckIdeg~agls~~~WSP-dgrhiL~tse----F~lriTVWSL~t~~~~~~~~---pK~~~kg~~f  141 (447)
T KOG4497|consen   79 VQPE---------WYCKIDEGQAGLSSISWSP-DGRHILLTSE----FDLRITVWSLNTQKGYLLPH---PKTNVKGYAF  141 (447)
T ss_pred             ecce---------eEEEeccCCCcceeeeECC-CcceEeeeec----ceeEEEEEEeccceeEEecc---cccCceeEEE
Confidence            6555         3344444555678899999 9999887543    34568999998876544432   2445578999


Q ss_pred             cCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe---CCcEEEEECCCCceEEE
Q 004971          378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNRRQV  454 (721)
Q Consensus       378 Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~~~l  454 (721)
                      .|||+..+..+.++....    .+|..-..-.-.+.......+-..+.|||||..|++..   +..++.|.-..      
T Consensus       142 ~~dg~f~ai~sRrDCkdy----v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~l------  211 (447)
T KOG4497|consen  142 HPDGQFCAILSRRDCKDY----VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGL------  211 (447)
T ss_pred             CCCCceeeeeecccHHHH----HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeecc------
Confidence            999999988776654211    11110000000011111122345689999999999874   34555554322      


Q ss_pred             eecCceeeEEcCCCCeEEEEecCCCCC------------------CCCCc---------------------------EEE
Q 004971          455 YFKNAFSTVWDPVREAVVYTSGGPEFA------------------SESSE---------------------------VDI  489 (721)
Q Consensus       455 ~~~~~~~~~~spdg~~la~~~~~~~~~------------------~~~~~---------------------------~~i  489 (721)
                         ++....|||-++.|++.+......                  ..+..                           ..+
T Consensus       212 ---G~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~  288 (447)
T KOG4497|consen  212 ---GLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHI  288 (447)
T ss_pred             ---ceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCc
Confidence               345567777777777766431100                  00000                           000


Q ss_pred             EEEEccC-C--CCccceEEc---ccCC---CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCc
Q 004971          490 ISINVDD-V--DGVSAVRRL---TTNG---KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD  560 (721)
Q Consensus       490 ~~~~~~~-~--~~~~~~~~l---~~~~---~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~  560 (721)
                      |...... .  ..+.....+   ++..   -...-++||+|..+++...+. -.+.||+||+..-+   +..+......+
T Consensus       289 ~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~-~PnalW~Wdlq~l~---l~avLiQk~pi  364 (447)
T KOG4497|consen  289 WEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDK-YPNALWLWDLQNLK---LHAVLIQKHPI  364 (447)
T ss_pred             cccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCC-CCceEEEEechhhh---hhhhhhhccce
Confidence            0000000 0  000011111   1111   233457999999998877642 24589999998766   44444445556


Q ss_pred             eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      ....|.|.-..|++.....       ++|.|...+-....+..  .+..+..+.|.-+|..|+..+.+.
T Consensus       365 raf~WdP~~prL~vctg~s-------rLY~W~psg~~~V~vP~--~GF~i~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  365 RAFEWDPGRPRLVVCTGKS-------RLYFWAPSGPRVVGVPK--KGFNIQKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             eEEEeCCCCceEEEEcCCc-------eEEEEcCCCceEEecCC--CCceeeeEEecCCCcEEEEEcCCc
Confidence            7899999999999888764       89999998855555543  346678899999999998877653

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.69  E-value=1.1e-13  Score=144.55  Aligned_cols=430  Identities=13%  Similarity=0.042  Sum_probs=268.9

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceE-eecCC--CCCccccccCCCCCEEEEEecCCCCCCccccee
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTR-RLTPY--GVADFSPAVSPSGKYTAVASYGNKGWDGEVEML  247 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~-~lt~~--~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~  247 (721)
                      ++  +|++|+.....           .+-.++..+++.. +....  .......+++||+++|+++..            
T Consensus        28 s~--nG~~L~t~~~d-----------~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~r------------   82 (775)
T KOG0319|consen   28 SS--NGQHLYTACGD-----------RVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASR------------   82 (775)
T ss_pred             CC--CCCEEEEecCc-----------eEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeec------------
Confidence            99  99977765433           6778888888774 22111  112234478999999988752            


Q ss_pred             eeeEEEEEcCCCceeEEEec--cCC--cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCccc
Q 004971          248 STDIYIFLTRDGTQRVKIVE--NGG--WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAF  323 (721)
Q Consensus       248 ~~~i~~~d~~~g~~~~l~~~--~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (721)
                      ..-+.+|.+.+|+..+....  .+.  ..+|.|-|.++.  ..+.++.+.+|++....         ....+.+++..+.
T Consensus        83 s~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlA--tggaD~~v~VWdi~~~~---------~th~fkG~gGvVs  151 (775)
T KOG0319|consen   83 SQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLA--TGGADGRVKVWDIKNGY---------CTHSFKGHGGVVS  151 (775)
T ss_pred             cceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEE--eccccceEEEEEeeCCE---------EEEEecCCCceEE
Confidence            35788888888876554322  222  337888886666  34447899999765443         5677778787888


Q ss_pred             CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCC-----
Q 004971          324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDG-----  398 (721)
Q Consensus       324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~-----  398 (721)
                      .+.|.| +-.+....+   |..+..+++||+.++.. .+.....|...+...++++|+..+++.+.+.-...|+.     
T Consensus       152 sl~F~~-~~~~~lL~s---g~~D~~v~vwnl~~~~t-cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~  226 (775)
T KOG0319|consen  152 SLLFHP-HWNRWLLAS---GATDGTVRVWNLNDKRT-CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKK  226 (775)
T ss_pred             EEEeCC-ccchhheee---cCCCceEEEEEcccCch-HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhh
Confidence            999988 765422222   45677899999987654 35555567778889999999988887654432110000     


Q ss_pred             --------------------------------cceeEEEeccCCCC--cceec--ccCCCCc------------------
Q 004971          399 --------------------------------NNQLLLENIKSPLP--DISLF--RFDGSFP------------------  424 (721)
Q Consensus       399 --------------------------------~~~l~~~~~~~~~~--~~~~~--~~~~~~~------------------  424 (721)
                                                      ...+..++..++.-  .....  ..-...+                  
T Consensus       227 l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~  306 (775)
T KOG0319|consen  227 LKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLF  306 (775)
T ss_pred             hheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEE
Confidence                                            00000011100000  00000  0000000                  


Q ss_pred             ------------------------eeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecC
Q 004971          425 ------------------------SFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGG  477 (721)
Q Consensus       425 ------------------------~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~  477 (721)
                                              -|.|+.++|+++. ...+.++++.+.....+.  ...+.++....+|-.|+.++  
T Consensus       307 l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~s--  384 (775)
T KOG0319|consen  307 LYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGS--  384 (775)
T ss_pred             EEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEec--
Confidence                                    1233334444442 334555555444444332  22333444334554444443  


Q ss_pred             CCCCCCCCcEEEEEEEccCC-------------------------------CCccc--------------eEEc------
Q 004971          478 PEFASESSEVDIISINVDDV-------------------------------DGVSA--------------VRRL------  506 (721)
Q Consensus       478 ~~~~~~~~~~~i~~~~~~~~-------------------------------~~~~~--------------~~~l------  506 (721)
                           .+..+.+|+++-+..                               +....              +..+      
T Consensus       385 -----KD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~  459 (775)
T KOG0319|consen  385 -----KDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTE  459 (775)
T ss_pred             -----CCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHH
Confidence                 467788887743221                               00000              0011      


Q ss_pred             ccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCce
Q 004971          507 TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF  586 (721)
Q Consensus       507 ~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~  586 (721)
                      ..|+..+..++++|+.+.|+..+.   +....+|+++....  ...+..+...+..+.|+|..+.|+.++.+.       
T Consensus       460 ~aHdKdIN~Vaia~ndkLiAT~Sq---DktaKiW~le~~~l--~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~-------  527 (775)
T KOG0319|consen  460 RAHDKDINCVAIAPNDKLIATGSQ---DKTAKIWDLEQLRL--LGVLSGHTRGVWCVSFSKNDQLLATCSGDK-------  527 (775)
T ss_pred             HhhcccccceEecCCCceEEeccc---ccceeeecccCceE--EEEeeCCccceEEEEeccccceeEeccCCc-------
Confidence            123345667899999999988887   67777888876554  777888888889999999999999998885       


Q ss_pred             eEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EEeccCC
Q 004971          587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLTQNS  665 (721)
Q Consensus       587 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt~~~  665 (721)
                      +|.+|.+.+..+.+-+. +|...+-...|-.+|+.|+....++                 .|-+|+.++++. ..|-.|.
T Consensus       528 TvKIW~is~fSClkT~e-GH~~aVlra~F~~~~~qliS~~adG-----------------liKlWnikt~eC~~tlD~H~  589 (775)
T KOG0319|consen  528 TVKIWSISTFSCLKTFE-GHTSAVLRASFIRNGKQLISAGADG-----------------LIKLWNIKTNECEMTLDAHN  589 (775)
T ss_pred             eEEEEEeccceeeeeec-CccceeEeeeeeeCCcEEEeccCCC-----------------cEEEEeccchhhhhhhhhcc
Confidence            99999999988776554 4777888899999999998877765                 488999999874 5777788


Q ss_pred             CCCCCceecCCcC
Q 004971          666 FEDGTPAWGPRFI  678 (721)
Q Consensus       666 ~~~~~~~~sp~~l  678 (721)
                      ..+++..-+|...
T Consensus       590 DrvWaL~~~~~~~  602 (775)
T KOG0319|consen  590 DRVWALSVSPLLD  602 (775)
T ss_pred             ceeEEEeecCccc
Confidence            7778888788533

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.69  E-value=5.6e-15  Score=154.78  Aligned_cols=278  Identities=19%  Similarity=0.251  Sum_probs=185.4

Q ss_pred             cCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC-CcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-
Q 004971          378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-  455 (721)
Q Consensus       378 Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-  455 (721)
                      |||++++++.......-.......+++.++..+. ..+.........+.|||||++|+|+.+.+||+.++.++..++|+ 
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~   80 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTT   80 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEecc
Confidence            7999999987665443333334678888887752 22222233456789999999999999999999999988888888 


Q ss_pred             ec-------------------CceeeEEcCCCCeEEEEecCCC------------------------CC---CCCCcEEE
Q 004971          456 FK-------------------NAFSTVWDPVREAVVYTSGGPE------------------------FA---SESSEVDI  489 (721)
Q Consensus       456 ~~-------------------~~~~~~~spdg~~la~~~~~~~------------------------~~---~~~~~~~i  489 (721)
                      ++                   ....+.|||||++|+|......                        ++   .....+.|
T Consensus        81 dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l  160 (353)
T PF00930_consen   81 DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSL  160 (353)
T ss_dssp             --TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEE
T ss_pred             ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEE
Confidence            22                   1246789999999999852110                        00   11245667


Q ss_pred             EEEEccCCCCccceEEcc------cCCCCCcceEEccCCCEEEEE-EeeC-CceeEEEEECCCCcccceEECcCCCcC--
Q 004971          490 ISINVDDVDGVSAVRRLT------TNGKNNAFPSVSPDGKWIVFR-STRT-GYKNLYIMDAEGGEGYGLHRLTEGPWS--  559 (721)
Q Consensus       490 ~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~SpDg~~l~~~-s~~~-g~~~l~~~d~~~g~~~~~~~l~~~~~~--  559 (721)
                      +.+++.++    +...+.      ........+.|++|++.|++. .+|. ....|+++|..++..+.+..-....+.  
T Consensus       161 ~v~~~~~~----~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~  236 (353)
T PF00930_consen  161 FVVDLASG----KTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV  236 (353)
T ss_dssp             EEEESSST----CCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred             EEEECCCC----cEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence            77776654    322222      122345568999999966555 4443 345888999988875433333333221  


Q ss_pred             ceeeEEc-cCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCc-CCeEECCCCCEEEEEEecCCCcCCCCC
Q 004971          560 DTMCNWS-PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA-NHPYFSPDGKSIVFTSDYGGISAEPIS  637 (721)
Q Consensus       560 ~~~~~~S-pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~-~~~~~SpDG~~l~~~~~~~~~~~~~~~  637 (721)
                      ...+.|. +++..+++...+    +|..+||+++.+++..++|+..  ...+ ..+.|+++++.|+|.+...+..     
T Consensus       237 ~~~~~~~~~~~~~~l~~s~~----~G~~hly~~~~~~~~~~~lT~G--~~~V~~i~~~d~~~~~iyf~a~~~~p~-----  305 (353)
T PF00930_consen  237 YDPPHFLGPDGNEFLWISER----DGYRHLYLYDLDGGKPRQLTSG--DWEVTSILGWDEDNNRIYFTANGDNPG-----  305 (353)
T ss_dssp             SSEEEE-TTTSSEEEEEEET----TSSEEEEEEETTSSEEEESS-S--SS-EEEEEEEECTSSEEEEEESSGGTT-----
T ss_pred             ecccccccCCCCEEEEEEEc----CCCcEEEEEcccccceeccccC--ceeecccceEcCCCCEEEEEecCCCCC-----
Confidence            2345665 899999999886    4789999999999988888752  3334 4578999999999999874311     


Q ss_pred             CCCCCCCCccEEEEEcC-CCCeEEeccCCCCCCCceecCCc
Q 004971          638 TPHQYQPYGEIFKIKLD-GSDLKRLTQNSFEDGTPAWGPRF  677 (721)
Q Consensus       638 ~~~~~~~~~~l~~~d~~-~~~~~~lt~~~~~~~~~~~sp~~  677 (721)
                             ..+||.++++ +++.++||...+....+.|||+.
T Consensus       306 -------~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg  339 (353)
T PF00930_consen  306 -------ERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDG  339 (353)
T ss_dssp             -------SBEEEEEETTETTEEEESSTTSSTTEEEEE-TTS
T ss_pred             -------ceEEEEEEeCCCCCeEeccCCCCCceEEEECCCC
Confidence                   3579999999 99999999866544479999974

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.69  E-value=8.3e-15  Score=134.60  Aligned_cols=273  Identities=13%  Similarity=0.108  Sum_probs=195.0

Q ss_pred             CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCC
Q 004971          318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRED  397 (721)
Q Consensus       318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~  397 (721)
                      +...+.+++|.. ||.+++-.     +.+..+.+|+++..+...-....++...+....|+|...-++++...+.     
T Consensus        19 ~~~~v~Sv~wn~-~g~~lasg-----s~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk-----   87 (313)
T KOG1407|consen   19 HVQKVHSVAWNC-DGTKLASG-----SFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDK-----   87 (313)
T ss_pred             hhhcceEEEEcc-cCceeeec-----ccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCc-----
Confidence            344677899999 99999874     3455588888877643322233455666778899987765555433332     


Q ss_pred             CcceeEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEE
Q 004971          398 GNNQLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY  473 (721)
Q Consensus       398 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~  473 (721)
                         .+.++++..... .............|||+|+++++.+ +..|..+|...-+...-.  .-.+..+.|+-++..++.
T Consensus        88 ---~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Ffl  164 (313)
T KOG1407|consen   88 ---TIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFL  164 (313)
T ss_pred             ---eEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEE
Confidence               356666655422 2222334455689999999999985 677888887665543322  345667889866655554


Q ss_pred             EecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC
Q 004971          474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL  553 (721)
Q Consensus       474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l  553 (721)
                      ++       ..+.++|..+..-.     .+..|..+........|+|+||++++.+.   +..+-+||++.--.  ++.+
T Consensus       165 t~-------GlG~v~ILsypsLk-----pv~si~AH~snCicI~f~p~GryfA~GsA---DAlvSLWD~~ELiC--~R~i  227 (313)
T KOG1407|consen  165 TN-------GLGCVEILSYPSLK-----PVQSIKAHPSNCICIEFDPDGRYFATGSA---DALVSLWDVDELIC--ERCI  227 (313)
T ss_pred             ec-------CCceEEEEeccccc-----cccccccCCcceEEEEECCCCceEeeccc---cceeeccChhHhhh--heee
Confidence            43       45788888876432     55667778777788899999999999987   78889999985433  6778


Q ss_pred             cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       554 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      +...+.+..++||-||++||.++.+.       -|-+.++.+|...--.+  ..+....++|.|..-.|+|+..+..
T Consensus       228 sRldwpVRTlSFS~dg~~lASaSEDh-------~IDIA~vetGd~~~eI~--~~~~t~tVAWHPk~~LLAyA~ddk~  295 (313)
T KOG1407|consen  228 SRLDWPVRTLSFSHDGRMLASASEDH-------FIDIAEVETGDRVWEIP--CEGPTFTVAWHPKRPLLAYACDDKD  295 (313)
T ss_pred             ccccCceEEEEeccCcceeeccCccc-------eEEeEecccCCeEEEee--ccCCceeEEecCCCceeeEEecCCC
Confidence            88888899999999999999999885       67888888885332222  5677789999999999999988764

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.69  E-value=1.4e-14  Score=135.20  Aligned_cols=266  Identities=14%  Similarity=0.051  Sum_probs=198.8

Q ss_pred             cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEEe-CCcEE
Q 004971          366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVY  442 (721)
Q Consensus       366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~  442 (721)
                      .+|...+..+.|++|+++|+..+.++.         +.+++..+.  ...+.+....+-..+|||.|+.+|..+ ++...
T Consensus        52 kGH~~Ki~~~~ws~Dsr~ivSaSqDGk---------lIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs  122 (343)
T KOG0286|consen   52 KGHLNKIYAMDWSTDSRRIVSASQDGK---------LIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS  122 (343)
T ss_pred             cccccceeeeEecCCcCeEEeeccCCe---------EEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence            456778889999999999999887776         566665433  222333223334469999999999885 66777


Q ss_pred             EEECCCC--c-----eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCC
Q 004971          443 VVNSDGS--N-----RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN  513 (721)
Q Consensus       443 v~d~~~g--~-----~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~  513 (721)
                      +|++.+.  +     .+.+.  .+.+....|-+|+..| ..+       .+.+.-+|++....     ....+..|.+.+
T Consensus       123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~il-T~S-------GD~TCalWDie~g~-----~~~~f~GH~gDV  189 (343)
T KOG0286|consen  123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHIL-TGS-------GDMTCALWDIETGQ-----QTQVFHGHTGDV  189 (343)
T ss_pred             EEecccccccccceeeeeecCccceeEEEEEcCCCceE-ecC-------CCceEEEEEcccce-----EEEEecCCcccE
Confidence            7887644  1     12333  4567778888866544 433       57889999998754     667777888889


Q ss_pred             cceEEcc-CCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEe
Q 004971          514 AFPSVSP-DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH  592 (721)
Q Consensus       514 ~~~~~Sp-Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d  592 (721)
                      ..+.++| +++.++..+-   +...++||+..+..  ......+..+++.+.|-|+|..++.++++.       ...+||
T Consensus       190 ~slsl~p~~~ntFvSg~c---D~~aklWD~R~~~c--~qtF~ghesDINsv~ffP~G~afatGSDD~-------tcRlyD  257 (343)
T KOG0286|consen  190 MSLSLSPSDGNTFVSGGC---DKSAKLWDVRSGQC--VQTFEGHESDINSVRFFPSGDAFATGSDDA-------TCRLYD  257 (343)
T ss_pred             EEEecCCCCCCeEEeccc---ccceeeeeccCcce--eEeecccccccceEEEccCCCeeeecCCCc-------eeEEEe
Confidence            9999999 9999887766   67899999998875  556677888899999999999999888875       889999


Q ss_pred             cCCCceEEeeec-CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEE-cCCCCeEEeccCCCCCCC
Q 004971          593 PNGTGLRKLIQS-GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK-LDGSDLKRLTQNSFEDGT  670 (721)
Q Consensus       593 ~~~~~~~~l~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~~~lt~~~~~~~~  670 (721)
                      +...+...+... .....+.+++||..|++|+....+.                 ...+|| +++...-.|..|.+.+..
T Consensus       258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~-----------------~c~vWDtlk~e~vg~L~GHeNRvSc  320 (343)
T KOG0286|consen  258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF-----------------TCNVWDTLKGERVGVLAGHENRVSC  320 (343)
T ss_pred             ecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCC-----------------ceeEeeccccceEEEeeccCCeeEE
Confidence            988766555532 1335678899999999876654443                 388999 466667799999999999


Q ss_pred             ceecCCcCCccc
Q 004971          671 PAWGPRFIRPVD  682 (721)
Q Consensus       671 ~~~sp~~l~~~~  682 (721)
                      ..-+|+.++...
T Consensus       321 l~~s~DG~av~T  332 (343)
T KOG0286|consen  321 LGVSPDGMAVAT  332 (343)
T ss_pred             EEECCCCcEEEe
Confidence            999998766554

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.68  E-value=1.8e-15  Score=147.24  Aligned_cols=274  Identities=15%  Similarity=0.109  Sum_probs=185.8

Q ss_pred             CCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCC-CceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971          316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVK-NKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST  394 (721)
Q Consensus       316 ~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~t-g~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~  394 (721)
                      ..+.-.+.-+.||+ +|++||.++..     ...-+|++.. ...+......++...+..+.||||.++|+.+..+..  
T Consensus       221 ~~htdEVWfl~FS~-nGkyLAsaSkD-----~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~--  292 (519)
T KOG0293|consen  221 QDHTDEVWFLQFSH-NGKYLASASKD-----STAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV--  292 (519)
T ss_pred             hhCCCcEEEEEEcC-CCeeEeeccCC-----ceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh--
Confidence            34444667889999 99999986533     2233444322 234444556667777888999999999998776655  


Q ss_pred             CCCCcceeEEEeccCCCCccee---cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCC
Q 004971          395 REDGNNQLLLENIKSPLPDISL---FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPV  467 (721)
Q Consensus       395 ~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spd  467 (721)
                             +++++..++......   ........+|-|||.+++..+ +..++.||+++.....-.   ...+..++.++|
T Consensus       293 -------~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~D  365 (519)
T KOG0293|consen  293 -------LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYD  365 (519)
T ss_pred             -------eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCC
Confidence                   566666555322111   122345679999999988774 889999999987533222   345788999999


Q ss_pred             CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc
Q 004971          468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG  547 (721)
Q Consensus       468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~  547 (721)
                      |++++.+.       .+..+.+|......      .+.+......+.....|.||+++++.-.   ...|.+||++....
T Consensus       366 gk~vl~v~-------~d~~i~l~~~e~~~------dr~lise~~~its~~iS~d~k~~LvnL~---~qei~LWDl~e~~l  429 (519)
T KOG0293|consen  366 GKYVLLVT-------VDKKIRLYNREARV------DRGLISEEQPITSFSISKDGKLALVNLQ---DQEIHLWDLEENKL  429 (519)
T ss_pred             CcEEEEEe-------cccceeeechhhhh------hhccccccCceeEEEEcCCCcEEEEEcc---cCeeEEeecchhhH
Confidence            99999886       46778887765432      1223333447788999999998887766   77899999985442


Q ss_pred             cceEECcCCCcC--ceeeEEc-cCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEE
Q 004971          548 YGLHRLTEGPWS--DTMCNWS-PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF  624 (721)
Q Consensus       548 ~~~~~l~~~~~~--~~~~~~S-pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~  624 (721)
                        +.+...+...  +..-.|. -|.+.|+.++.+.       +||+|+..+|++..... +|...++.++|+|-..++..
T Consensus       430 --v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~-------kvyIWhr~sgkll~~Ls-GHs~~vNcVswNP~~p~m~A  499 (519)
T KOG0293|consen  430 --VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDS-------KVYIWHRISGKLLAVLS-GHSKTVNCVSWNPADPEMFA  499 (519)
T ss_pred             --HHHhhcccccceEEEeccCCCCcceEEecCCCc-------eEEEEEccCCceeEeec-CCcceeeEEecCCCCHHHhh
Confidence              4444433221  1222343 3456777777664       99999999998877665 48888999999998876554


Q ss_pred             EEecCC
Q 004971          625 TSDYGG  630 (721)
Q Consensus       625 ~~~~~~  630 (721)
                      ++.+++
T Consensus       500 SasDDg  505 (519)
T KOG0293|consen  500 SASDDG  505 (519)
T ss_pred             ccCCCC
Confidence            444443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.67  E-value=1.4e-15  Score=147.94  Aligned_cols=268  Identities=14%  Similarity=0.103  Sum_probs=181.8

Q ss_pred             cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC---CCcceecccCCCCceeCcCCCEEEEEe-CCcE
Q 004971          366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP---LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGV  441 (721)
Q Consensus       366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l  441 (721)
                      ..|...++...||++|++|+.++.+..       ..+|.......   ...+......+.++.||||.++|+.++ +..+
T Consensus       221 ~~htdEVWfl~FS~nGkyLAsaSkD~T-------aiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~  293 (519)
T KOG0293|consen  221 QDHTDEVWFLQFSHNGKYLASASKDST-------AIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL  293 (519)
T ss_pred             hhCCCcEEEEEEcCCCeeEeeccCCce-------EEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence            445677888999999999999877666       44555544443   122233334456789999999998884 6679


Q ss_pred             EEEECCCCceEEEee----cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcce
Q 004971          442 YVVNSDGSNRRQVYF----KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFP  516 (721)
Q Consensus       442 ~v~d~~~g~~~~l~~----~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~  516 (721)
                      ++||+++|+.+...+    ..+.+.+|-|||.+++..+       .+.  .++..++++.    ......... ..+..+
T Consensus       294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs-------~dr--~i~~wdlDgn----~~~~W~gvr~~~v~dl  360 (519)
T KOG0293|consen  294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGS-------PDR--TIIMWDLDGN----ILGNWEGVRDPKVHDL  360 (519)
T ss_pred             eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecC-------CCC--cEEEecCCcc----hhhcccccccceeEEE
Confidence            999999999877762    3567899999999988875       234  4444555543    222222222 356778


Q ss_pred             EEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971          517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                      +.++||++++....   +..|++++..+...   +.+......+..+..|.||+++++.-...       .+.+||+...
T Consensus       361 ait~Dgk~vl~v~~---d~~i~l~~~e~~~d---r~lise~~~its~~iS~d~k~~LvnL~~q-------ei~LWDl~e~  427 (519)
T KOG0293|consen  361 AITYDGKYVLLVTV---DKKIRLYNREARVD---RGLISEEQPITSFSISKDGKLALVNLQDQ-------EIHLWDLEEN  427 (519)
T ss_pred             EEcCCCcEEEEEec---ccceeeechhhhhh---hccccccCceeEEEEcCCCcEEEEEcccC-------eeEEeecchh
Confidence            99999999998886   78999999886542   22333344568899999999877766654       8999999854


Q ss_pred             ceEEeeecCCCC--CcCCeEEC-CCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EEeccCCCCCCCce
Q 004971          597 GLRKLIQSGSAG--RANHPYFS-PDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLTQNSFEDGTPA  672 (721)
Q Consensus       597 ~~~~l~~~~~~~--~~~~~~~S-pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt~~~~~~~~~~  672 (721)
                      +..+-.. ++..  .+-.-.|- -|.++|+..+.++                 .||+|+..++++ ..|+.|...+...+
T Consensus       428 ~lv~kY~-Ghkq~~fiIrSCFgg~~~~fiaSGSED~-----------------kvyIWhr~sgkll~~LsGHs~~vNcVs  489 (519)
T KOG0293|consen  428 KLVRKYF-GHKQGHFIIRSCFGGGNDKFIASGSEDS-----------------KVYIWHRISGKLLAVLSGHSKTVNCVS  489 (519)
T ss_pred             hHHHHhh-cccccceEEEeccCCCCcceEEecCCCc-----------------eEEEEEccCCceeEeecCCcceeeEEe
Confidence            3322211 1111  11122332 2334454444443                 599999888765 69999999999999


Q ss_pred             ecCC---cCCccccc
Q 004971          673 WGPR---FIRPVDVE  684 (721)
Q Consensus       673 ~sp~---~l~~~~~~  684 (721)
                      |.|.   |+|.++=|
T Consensus       490 wNP~~p~m~ASasDD  504 (519)
T KOG0293|consen  490 WNPADPEMFASASDD  504 (519)
T ss_pred             cCCCCHHHhhccCCC
Confidence            9984   77777644

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.67  E-value=4.9e-13  Score=129.77  Aligned_cols=285  Identities=13%  Similarity=0.166  Sum_probs=183.3

Q ss_pred             eeeEEEEECCC--CceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee------c
Q 004971          346 YRHIELFDLVK--NKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL------F  417 (721)
Q Consensus       346 ~~~l~l~dl~t--g~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~  417 (721)
                      ...|++|++.+  |+...+ ...........++|+|++++|+.....+...+    ..-|..+-..+  .++.      .
T Consensus        15 s~gI~v~~ld~~~g~l~~~-~~v~~~~nptyl~~~~~~~~LY~v~~~~~~gg----vaay~iD~~~G--~Lt~ln~~~~~   87 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLL-QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGG----VAAYRIDPDDG--RLTFLNRQTLP   87 (346)
T ss_pred             CCceEEEEEeCcccccchh-hhccccCCCceEEECCCCCEEEEEEecCCcCc----EEEEEEcCCCC--eEEEeeccccC
Confidence            44578877763  433222 22333456677899999999998776643211    23333332222  2222      1


Q ss_pred             ccCCCCceeCcCCCEEEEE--eCCcEEEEECCC-CceEEE----e-ecC----------ceeeEEcCCCCeEEEEecCCC
Q 004971          418 RFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDG-SNRRQV----Y-FKN----------AFSTVWDPVREAVVYTSGGPE  479 (721)
Q Consensus       418 ~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~-g~~~~l----~-~~~----------~~~~~~spdg~~la~~~~~~~  479 (721)
                      .....+++++++|+.|+.+  ..+.|.++.+.. |.+...    . .+.          +....++||+++|+...    
T Consensus        88 g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D----  163 (346)
T COG2706          88 GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD----  163 (346)
T ss_pred             CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee----
Confidence            1222457899999988887  367788888743 543222    1 222          45678999999999886    


Q ss_pred             CCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC----
Q 004971          480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE----  555 (721)
Q Consensus       480 ~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~----  555 (721)
                        ....++.+|+++ ++.........+ ..+....+++|+|+|+..++..+-++.-.+|.++...|+...+..+..    
T Consensus       164 --LG~Dri~~y~~~-dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d  239 (346)
T COG2706         164 --LGTDRIFLYDLD-DGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED  239 (346)
T ss_pred             --cCCceEEEEEcc-cCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc
Confidence              345778888887 332111122223 233467889999999999999887666667777776677443433321    


Q ss_pred             --CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCC-cCCeEECCCCCEEEEEEecCCCc
Q 004971          556 --GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR-ANHPYFSPDGKSIVFTSDYGGIS  632 (721)
Q Consensus       556 --~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~~~SpDG~~l~~~~~~~~~~  632 (721)
                        +......+..||||++|+.+....    ..-.+|.+|.+++++..+......+. ...+.++++|++|+.+..++..-
T Consensus       240 F~g~~~~aaIhis~dGrFLYasNRg~----dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i  315 (346)
T COG2706         240 FTGTNWAAAIHISPDGRFLYASNRGH----DSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNI  315 (346)
T ss_pred             cCCCCceeEEEECCCCCEEEEecCCC----CeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcE
Confidence              122346788999999877665543    44567777888887665543323343 68899999999999988877542


Q ss_pred             CCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          633 AEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       633 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                                    .+|..|.++|++..+..
T Consensus       316 --------------~vf~~d~~TG~L~~~~~  332 (346)
T COG2706         316 --------------TVFERDKETGRLTLLGR  332 (346)
T ss_pred             --------------EEEEEcCCCceEEeccc
Confidence                          58888889999888876

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.67  E-value=1.8e-14  Score=133.80  Aligned_cols=193  Identities=14%  Similarity=0.057  Sum_probs=145.2

Q ss_pred             CCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          421 GSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      ......|+||++....+ ++.+++||+.+|+..+.+   ...+..+++|+|.+.|+..+       .+..+.+|..-.. 
T Consensus        66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGS-------rDkTiklwnt~g~-  137 (315)
T KOG0279|consen   66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGS-------RDKTIKLWNTLGV-  137 (315)
T ss_pred             ecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCC-------Ccceeeeeeeccc-
Confidence            44578999998776664 889999999999876666   45788999999999999886       5788999987643 


Q ss_pred             CCCccceEEcccC--CCCCcceEEccC--CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEE
Q 004971          497 VDGVSAVRRLTTN--GKNNAFPSVSPD--GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWI  572 (721)
Q Consensus       497 ~~~~~~~~~l~~~--~~~~~~~~~SpD--g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l  572 (721)
                           ....+...  ...+..+.|+|.  .-.|+..+.   +..+.+||+++-+.  ......+...++.+++||||..+
T Consensus       138 -----ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~---DktvKvWnl~~~~l--~~~~~gh~~~v~t~~vSpDGslc  207 (315)
T KOG0279|consen  138 -----CKYTIHEDSHREWVSCVRFSPNESNPIIVSASW---DKTVKVWNLRNCQL--RTTFIGHSGYVNTVTVSPDGSLC  207 (315)
T ss_pred             -----EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC---CceEEEEccCCcch--hhccccccccEEEEEECCCCCEE
Confidence                 33333333  356788999998  455665666   78999999998663  33445567778899999999988


Q ss_pred             EEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEE
Q 004971          573 AFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK  652 (721)
Q Consensus       573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d  652 (721)
                      +.+..++       .+++||++.++.....  ++...+.+++|+|+.=+|..+...                  .|.+||
T Consensus       208 asGgkdg-------~~~LwdL~~~k~lysl--~a~~~v~sl~fspnrywL~~at~~------------------sIkIwd  260 (315)
T KOG0279|consen  208 ASGGKDG-------EAMLWDLNEGKNLYSL--EAFDIVNSLCFSPNRYWLCAATAT------------------SIKIWD  260 (315)
T ss_pred             ecCCCCc-------eEEEEEccCCceeEec--cCCCeEeeEEecCCceeEeeccCC------------------ceEEEe
Confidence            8766554       8999999888653322  256778999999986666544432                  289999


Q ss_pred             cCCCCe
Q 004971          653 LDGSDL  658 (721)
Q Consensus       653 ~~~~~~  658 (721)
                      ++++..
T Consensus       261 l~~~~~  266 (315)
T KOG0279|consen  261 LESKAV  266 (315)
T ss_pred             ccchhh
Confidence            998854

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.66  E-value=3.4e-14  Score=144.32  Aligned_cols=270  Identities=16%  Similarity=0.177  Sum_probs=183.8

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      ...|++++++++.  ...++.+.+|......         ....+..+...+..+.|+| +++.++...     .+..|.
T Consensus        14 ~~~~~~~~~~l~~--~~~~g~i~i~~~~~~~---------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-----~~~~i~   76 (289)
T cd00200          14 CVAFSPDGKLLAT--GSGDGTIKVWDLETGE---------LLRTLKGHTGPVRDVAASA-DGTYLASGS-----SDKTIR   76 (289)
T ss_pred             EEEEcCCCCEEEE--eecCcEEEEEEeeCCC---------cEEEEecCCcceeEEEECC-CCCEEEEEc-----CCCeEE
Confidence            4478999776553  2337888888654332         3344444544556889999 998888754     245699


Q ss_pred             EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC--cceecccCCCCceeCc
Q 004971          351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSP  428 (721)
Q Consensus       351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~Sp  428 (721)
                      +||+.+++.  +.....+...+..+.|+++++.++....++         .+.++++.....  .+.........+.|+|
T Consensus        77 i~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~  145 (289)
T cd00200          77 LWDLETGEC--VRTLTGHTSYVSSVAFSPDGRILSSSSRDK---------TIKVWDVETGKCLTTLRGHTDWVNSVAFSP  145 (289)
T ss_pred             EEEcCcccc--eEEEeccCCcEEEEEEcCCCCEEEEecCCC---------eEEEEECCCcEEEEEeccCCCcEEEEEEcC
Confidence            999987653  222233455677899999977666544233         355666543211  1111122245578999


Q ss_pred             CCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceE
Q 004971          429 KGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVR  504 (721)
Q Consensus       429 DG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  504 (721)
                      +++.++... ++.|.+||+..++.....   ...+..+.|+|+++.+++.+       .++.+.+|++....     ...
T Consensus       146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~~~~i~i~d~~~~~-----~~~  213 (289)
T cd00200         146 DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-------SDGTIKLWDLSTGK-----CLG  213 (289)
T ss_pred             cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec-------CCCcEEEEECCCCc-----eec
Confidence            988888776 889999999876644333   34678999999999998886       36788888876532     334


Q ss_pred             EcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCC
Q 004971          505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG  584 (721)
Q Consensus       505 ~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~  584 (721)
                      .+..+...+..+.|+|+++.++..+.   +..|++|+..+++.  ...+..+...+..+.|+|+++.|+.+..++     
T Consensus       214 ~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~i~i~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----  283 (289)
T cd00200         214 TLRGHENGVNSVAFSPDGYLLASGSE---DGTIRVWDLRTGEC--VQTLSGHTNSVTSLAWSPDGKRLASGSADG-----  283 (289)
T ss_pred             chhhcCCceEEEEEcCCCcEEEEEcC---CCcEEEEEcCCcee--EEEccccCCcEEEEEECCCCCEEEEecCCC-----
Confidence            44345557778999999887776664   57899999987664  555555555678899999999998888764     


Q ss_pred             ceeEEEEe
Q 004971          585 SFEMYLIH  592 (721)
Q Consensus       585 ~~~i~~~d  592 (721)
                        .|.+|+
T Consensus       284 --~i~iw~  289 (289)
T cd00200         284 --TIRIWD  289 (289)
T ss_pred             --eEEecC
Confidence              677764

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=3.5e-14  Score=133.95  Aligned_cols=282  Identities=15%  Similarity=0.082  Sum_probs=183.3

Q ss_pred             CCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceE--EeecccCCCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971          316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFI--ELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS  393 (721)
Q Consensus       316 ~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~--~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~  393 (721)
                      .++...+..++||. ||++++..+     .++.|++|++..-+.+  ...+..-+......+.|+||-+.+++....+  
T Consensus        83 KgH~~~vt~~~FsS-dGK~lat~~-----~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g--  154 (420)
T KOG2096|consen   83 KGHKKEVTDVAFSS-DGKKLATIS-----GDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG--  154 (420)
T ss_pred             hccCCceeeeEEcC-CCceeEEEe-----CCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC--
Confidence            35556778899999 999999865     4566999998753211  1111111233566789999999988866544  


Q ss_pred             CCCCCcceeEEEeccC---CCCcceeccc-----------CCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe--e
Q 004971          394 TREDGNNQLLLENIKS---PLPDISLFRF-----------DGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY--F  456 (721)
Q Consensus       394 ~~~~~~~~l~~~~~~~---~~~~~~~~~~-----------~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~--~  456 (721)
                            ..++++.+.-   +.........           ....+.....+++|+.+ .+..|.+|++.+.....|.  .
T Consensus       155 ------~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq  228 (420)
T KOG2096|consen  155 ------NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQ  228 (420)
T ss_pred             ------CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeecccc
Confidence                  3455554421   1111111000           01123445556666666 4789999999976666665  3


Q ss_pred             cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc---cceEEcccCCCCCcceEEccCCCEEEEEEeeCC
Q 004971          457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV---SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG  533 (721)
Q Consensus       457 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g  533 (721)
                      ......+.||+|++|+....       ...+.+|.+-....+..   ..+..|..+...+..++|||+.++++..+.   
T Consensus       229 ~~n~~aavSP~GRFia~~gF-------TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk---  298 (420)
T KOG2096|consen  229 SSNYDAAVSPDGRFIAVSGF-------TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK---  298 (420)
T ss_pred             ccccceeeCCCCcEEEEecC-------CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec---
Confidence            45568899999999998863       46788887765443211   233445666677888999999999999986   


Q ss_pred             ceeEEEEECCC----C-cccceEE----CcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec
Q 004971          534 YKNLYIMDAEG----G-EGYGLHR----LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS  604 (721)
Q Consensus       534 ~~~l~~~d~~~----g-~~~~~~~----l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~  604 (721)
                      +..+.+||.+-    + .++.++.    +-........+..||.|+.|+.+...        .|.++....|+.......
T Consensus       299 DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs--------~l~~~~se~g~~~~~~e~  370 (420)
T KOG2096|consen  299 DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS--------DLKVFASEDGKDYPELED  370 (420)
T ss_pred             CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC--------ceEEEEcccCccchhHHH
Confidence            55666666531    1 1111111    11112334578999999999988865        688888877765544333


Q ss_pred             CCCCCcCCeEECCCCCEEEEEEecC
Q 004971          605 GSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       605 ~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      .+...+.+++|++||++++....+.
T Consensus       371 ~h~~~Is~is~~~~g~~~atcGdr~  395 (420)
T KOG2096|consen  371 IHSTTISSISYSSDGKYIATCGDRY  395 (420)
T ss_pred             hhcCceeeEEecCCCcEEeeeccee
Confidence            4778899999999999999877654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.65  E-value=7.9e-13  Score=128.35  Aligned_cols=262  Identities=15%  Similarity=0.124  Sum_probs=175.3

Q ss_pred             CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCC
Q 004971          319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDG  398 (721)
Q Consensus       319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~  398 (721)
                      ......++|+| ++++|+.............+-+|..+|+...+......+.....++++++|+.|+.+....+.     
T Consensus        39 ~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~-----  112 (346)
T COG2706          39 LGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGS-----  112 (346)
T ss_pred             cCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCce-----
Confidence            33556789999 999887765442222333455666668877776554444455788999999999987766542     


Q ss_pred             cceeEEEeccC-C-CCcc-------------eecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe------
Q 004971          399 NNQLLLENIKS-P-LPDI-------------SLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY------  455 (721)
Q Consensus       399 ~~~l~~~~~~~-~-~~~~-------------~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~------  455 (721)
                         +.+..+.. + ....             .+......+..+.|||++|+..  +...|++++++.|......      
T Consensus       113 ---v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~  189 (346)
T COG2706         113 ---VSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP  189 (346)
T ss_pred             ---EEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence               33333321 1 1111             1111113346789999999888  5788999999987654333      


Q ss_pred             ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc---cCC------CCCcceEEccCCCEEE
Q 004971          456 FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT---TNG------KNNAFPSVSPDGKWIV  526 (721)
Q Consensus       456 ~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~---~~~------~~~~~~~~SpDg~~l~  526 (721)
                      ..+.+.+.|.|+++..++++      .-++++.+|.++...+    +.+.+.   ..+      .....+.+||||++|+
T Consensus       190 G~GPRHi~FHpn~k~aY~v~------EL~stV~v~~y~~~~g----~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY  259 (346)
T COG2706         190 GAGPRHIVFHPNGKYAYLVN------ELNSTVDVLEYNPAVG----KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY  259 (346)
T ss_pred             CCCcceEEEcCCCcEEEEEe------ccCCEEEEEEEcCCCc----eEEEeeeeccCccccCCCCceeEEEECCCCCEEE
Confidence            45778999999999999987      3578999999987643    333332   211      2345578999999887


Q ss_pred             EEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971          527 FRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ  603 (721)
Q Consensus       527 ~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  603 (721)
                      ........-.+|.+|.++|+...+............+.++|+|+.|+.+..+.    ..-.+|..|-.+|++.++..
T Consensus       260 asNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s----d~i~vf~~d~~TG~L~~~~~  332 (346)
T COG2706         260 ASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS----DNITVFERDKETGRLTLLGR  332 (346)
T ss_pred             EecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC----CcEEEEEEcCCCceEEeccc
Confidence            66543334467777888887433333333333357889999999998888774    56788999999998777654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=3.6e-13  Score=127.80  Aligned_cols=273  Identities=15%  Similarity=0.144  Sum_probs=178.8

Q ss_pred             CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCC
Q 004971          319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDG  398 (721)
Q Consensus       319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~  398 (721)
                      ...+..+.|++ +|..++..+     ++..|.+||..+++.....  ......+....|......+++.+...+      
T Consensus        14 ~~~i~sl~fs~-~G~~litss-----~dDsl~LYd~~~g~~~~ti--~skkyG~~~~~Fth~~~~~i~sStk~d------   79 (311)
T KOG1446|consen   14 NGKINSLDFSD-DGLLLITSS-----EDDSLRLYDSLSGKQVKTI--NSKKYGVDLACFTHHSNTVIHSSTKED------   79 (311)
T ss_pred             CCceeEEEecC-CCCEEEEec-----CCCeEEEEEcCCCceeeEe--ecccccccEEEEecCCceEEEccCCCC------
Confidence            44667899999 999988743     2335999999999843332  223333444666666666666554322      


Q ss_pred             cceeEEEeccCCCCcceec---ccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEE
Q 004971          399 NNQLLLENIKSPLPDISLF---RFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVY  473 (721)
Q Consensus       399 ~~~l~~~~~~~~~~~~~~~---~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~  473 (721)
                       ..|...++... +-+..+   ...+..+..+|-+..++..+ +..|++||+...+.+-+. .....-.+|.|.|-.+|.
T Consensus        80 -~tIryLsl~dN-kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~  157 (311)
T KOG1446|consen   80 -DTIRYLSLHDN-KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFAL  157 (311)
T ss_pred             -CceEEEEeecC-ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEE
Confidence             22333333221 011111   11234568888887766664 779999999977765554 445557899999998888


Q ss_pred             EecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC-CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE
Q 004971          474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN-GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR  552 (721)
Q Consensus       474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~  552 (721)
                      +.       ....+.||++..-+. ++.....+... ......+.||||||+|+...+   ...++++|.-+|..  ...
T Consensus       158 ~~-------~~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~---~s~~~~lDAf~G~~--~~t  224 (311)
T KOG1446|consen  158 AN-------GSELIKLYDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN---ASFIYLLDAFDGTV--KST  224 (311)
T ss_pred             ec-------CCCeEEEEEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEeC---CCcEEEEEccCCcE--eee
Confidence            86       334889998875432 11222233322 245567899999999999987   77899999999984  333


Q ss_pred             CcCC--Cc-CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          553 LTEG--PW-SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       553 l~~~--~~-~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      +...  .. ......|+|||+.|+.++.++       .|.+|++.++.....+.....+....+.|.|-  +..+++...
T Consensus       225 fs~~~~~~~~~~~a~ftPds~Fvl~gs~dg-------~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~--~~mf~sa~s  295 (311)
T KOG1446|consen  225 FSGYPNAGNLPLSATFTPDSKFVLSGSDDG-------TIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR--YAMFVSASS  295 (311)
T ss_pred             EeeccCCCCcceeEEECCCCcEEEEecCCC-------cEEEEEcCCCcEeeEecCCCCCCccccccCCc--eeeeeecCc
Confidence            3322  11 224678999999999888876       89999999998776665434566677889986  555555544

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.64  E-value=4.7e-14  Score=152.48  Aligned_cols=265  Identities=19%  Similarity=0.181  Sum_probs=189.0

Q ss_pred             cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccC--CCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEEC-
Q 004971          371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS--PLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNS-  446 (721)
Q Consensus       371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~-  446 (721)
                      .+....||+||+.++....++.       ..++......  -...+.........++|||||+.++.. .+..|++||+ 
T Consensus       161 sv~~~~fs~~g~~l~~~~~~~~-------i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  161 SVTCVDFSPDGRALAAASSDGL-------IRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             ceEEEEEcCCCCeEEEccCCCc-------EEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence            3455889999999888766665       2333321111  011112223334568999999988877 4889999999 


Q ss_pred             CCCce-EEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCC
Q 004971          447 DGSNR-RQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGK  523 (721)
Q Consensus       447 ~~g~~-~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~  523 (721)
                      ..+.. +.+.  ...+....|+|+|+.++.++       .++.++||++....     ..+.+..+...+..++|++||+
T Consensus       234 ~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs-------~D~tvriWd~~~~~-----~~~~l~~hs~~is~~~f~~d~~  301 (456)
T KOG0266|consen  234 DDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGS-------DDGTVRIWDVRTGE-----CVRKLKGHSDGISGLAFSPDGN  301 (456)
T ss_pred             CCCeEEEEecCCCCceEEEEecCCCCEEEEec-------CCCcEEEEeccCCe-----EEEeeeccCCceEEEEECCCCC
Confidence            44443 4443  56788999999997777775       68999999998733     7788888888899999999999


Q ss_pred             EEEEEEeeCCceeEEEEECCCCcccceEECcCCCc--CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEe
Q 004971          524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW--SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL  601 (721)
Q Consensus       524 ~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~--~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l  601 (721)
                      .|+..+.   +..|.+||+.++.......+.....  .+..+.|+|+|++|+....+.       .+.+||+..+.....
T Consensus       302 ~l~s~s~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~-------~~~~w~l~~~~~~~~  371 (456)
T KOG0266|consen  302 LLVSASY---DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR-------TLKLWDLRSGKSVGT  371 (456)
T ss_pred             EEEEcCC---CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC-------eEEEEEccCCcceee
Confidence            9998866   7899999999988210233333322  368899999999999998875       899999998766554


Q ss_pred             eecCCCC---CcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC-eEEeccC-CCCCCCceecCC
Q 004971          602 IQSGSAG---RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD-LKRLTQN-SFEDGTPAWGPR  676 (721)
Q Consensus       602 ~~~~~~~---~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~lt~~-~~~~~~~~~sp~  676 (721)
                      ... +..   -...+..+++|++++..+.+..                 |++||+.++. +.++..+ ...+..+.|+|.
T Consensus       372 ~~~-~~~~~~~~~~~~~~~~~~~i~sg~~d~~-----------------v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~  433 (456)
T KOG0266|consen  372 YTG-HSNLVRCIFSPTLSTGGKLIYSGSEDGS-----------------VYVWDSSSGGILQRLEGHSKAAVSDLSSHPT  433 (456)
T ss_pred             ecc-cCCcceeEecccccCCCCeEEEEeCCce-----------------EEEEeCCccchhhhhcCCCCCceeccccCCC
Confidence            433 322   2335566889999988777653                 9999998764 4577766 555677888774


Q ss_pred             --cCCccc
Q 004971          677 --FIRPVD  682 (721)
Q Consensus       677 --~l~~~~  682 (721)
                        +++...
T Consensus       434 ~~~~~s~s  441 (456)
T KOG0266|consen  434 ENLIASSS  441 (456)
T ss_pred             cCeeeecC
Confidence              444443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.63  E-value=7.3e-15  Score=154.79  Aligned_cols=207  Identities=15%  Similarity=0.128  Sum_probs=148.8

Q ss_pred             ceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEee
Q 004971          311 SIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCR  390 (721)
Q Consensus       311 ~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~  390 (721)
                      ..+.+.+|...+....|+| |.++|+-.     +++..+++|.+.+.....  ...+|...++.+.|+|-|-+++.++.+
T Consensus       443 ~~~~L~GH~GPVyg~sFsP-d~rfLlSc-----SED~svRLWsl~t~s~~V--~y~GH~~PVwdV~F~P~GyYFatas~D  514 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSP-DRRFLLSC-----SEDSSVRLWSLDTWSCLV--IYKGHLAPVWDVQFAPRGYYFATASHD  514 (707)
T ss_pred             eeEEeecCCCceeeeeecc-cccceeec-----cCCcceeeeecccceeEE--EecCCCcceeeEEecCCceEEEecCCC
Confidence            4555778888889999999 99988763     356679999999876433  345777788899999999888877665


Q ss_pred             CCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEeecCceeeEEcCCCC
Q 004971          391 GGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVRE  469 (721)
Q Consensus       391 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~  469 (721)
                      ..       .++|..+-..+..-+...-.++....|+|++.+++.. .+..+.+||+.+|.                   
T Consensus       515 ~t-------ArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-------------------  568 (707)
T KOG0263|consen  515 QT-------ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-------------------  568 (707)
T ss_pred             ce-------eeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc-------------------
Confidence            55       5566655332222111112223334555555555444 24445555544433                   


Q ss_pred             eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccc
Q 004971          470 AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG  549 (721)
Q Consensus       470 ~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~  549 (721)
                                                      .++.++.|...+..++|||+|++|+..+.   +..|.+||+.+|+.  
T Consensus       569 --------------------------------~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e---d~~I~iWDl~~~~~--  611 (707)
T KOG0263|consen  569 --------------------------------SVRIFTGHKGPVTALAFSPCGRYLASGDE---DGLIKIWDLANGSL--  611 (707)
T ss_pred             --------------------------------EEEEecCCCCceEEEEEcCCCceEeeccc---CCcEEEEEcCCCcc--
Confidence                                            34455556667888999999999999887   78999999999886  


Q ss_pred             eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971          550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       550 ~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      +..+..+...+..+.||.||..|+.++.+.       .|.+||+..
T Consensus       612 v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn-------sV~lWD~~~  650 (707)
T KOG0263|consen  612 VKQLKGHTGTIYSLSFSRDGNVLASGGADN-------SVRLWDLTK  650 (707)
T ss_pred             hhhhhcccCceeEEEEecCCCEEEecCCCC-------eEEEEEchh
Confidence            777777788889999999999999988875       899999854

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.63  E-value=1.5e-12  Score=135.85  Aligned_cols=260  Identities=12%  Similarity=0.037  Sum_probs=153.0

Q ss_pred             eeeEEEEECCC-CceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEecc-CCC-Cccee--cccC
Q 004971          346 YRHIELFDLVK-NKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK-SPL-PDISL--FRFD  420 (721)
Q Consensus       346 ~~~l~l~dl~t-g~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~~~~--~~~~  420 (721)
                      +..|.+||+.+ ++.+.+.... .......++++||++.|+......        ..+...++. .+. ..+..  ....
T Consensus        11 ~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~--------~~i~~~~~~~~g~l~~~~~~~~~~~   81 (330)
T PRK11028         11 SQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPE--------FRVLSYRIADDGALTFAAESPLPGS   81 (330)
T ss_pred             CCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCC--------CcEEEEEECCCCceEEeeeecCCCC
Confidence            35599999964 4544443332 234456789999999998765432        234444443 221 11111  1223


Q ss_pred             CCCceeCcCCCEEEEEe--CCcEEEEECCC-Cce-EEE---e-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971          421 GSFPSFSPKGDRIAFVE--FPGVYVVNSDG-SNR-RQV---Y-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI  492 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~~--~~~l~v~d~~~-g~~-~~l---~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~  492 (721)
                      ...++++|||++|+...  .+.|.+|+++. +.. ..+   . ...+....++|||+++++...      ..+.+.+|++
T Consensus        82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~  155 (330)
T PRK11028         82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL------KEDRIRLFTL  155 (330)
T ss_pred             ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC------CCCEEEEEEE
Confidence            45678999999988874  67899999863 321 111   1 224566789999999988763      5678889988


Q ss_pred             EccCCCCc--cceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC--CCcccceEECcCC------CcCcee
Q 004971          493 NVDDVDGV--SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE--GGEGYGLHRLTEG------PWSDTM  562 (721)
Q Consensus       493 ~~~~~~~~--~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~--~g~~~~~~~l~~~------~~~~~~  562 (721)
                      +..+....  .....+.. .....+++|+|||++|++....  ...|.+|+++  +++.+.+..+...      ......
T Consensus       156 ~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~--~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  232 (330)
T PRK11028        156 SDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNEL--NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD  232 (330)
T ss_pred             CCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecC--CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee
Confidence            75331000  00011212 2345678999999999888754  4567777765  3442222222211      111235


Q ss_pred             eEEccCCCEEEEEEccCCCCCCceeEEEEecCC--CceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG--TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      +.++|||++|+.+....      ..|.+|+++.  +..+.+-..........+.++|||++|+.+....
T Consensus       233 i~~~pdg~~lyv~~~~~------~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~  295 (330)
T PRK11028        233 IHITPDGRHLYACDRTA------SLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS  295 (330)
T ss_pred             EEECCCCCEEEEecCCC------CeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence            78999999988874332      3677776643  3222211111223456789999999999876544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.62  E-value=1.8e-12  Score=135.32  Aligned_cols=280  Identities=11%  Similarity=0.058  Sum_probs=161.6

Q ss_pred             CCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECC-CCceEEeecc
Q 004971          287 EEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLV-KNKFIELTRF  365 (721)
Q Consensus       287 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~-tg~~~~l~~~  365 (721)
                      ..++.+.+|++...+..       ...+..........++++| ||++|+.....    ...|..|++. +++...+...
T Consensus         9 ~~~~~I~~~~~~~~g~l-------~~~~~~~~~~~~~~l~~sp-d~~~lyv~~~~----~~~i~~~~~~~~g~l~~~~~~   76 (330)
T PRK11028          9 PESQQIHVWNLNHEGAL-------TLLQVVDVPGQVQPMVISP-DKRHLYVGVRP----EFRVLSYRIADDGALTFAAES   76 (330)
T ss_pred             CCCCCEEEEEECCCCce-------eeeeEEecCCCCccEEECC-CCCEEEEEECC----CCcEEEEEECCCCceEEeeee
Confidence            34677888876432211       1222222233456789999 99988775432    2448888876 4544333322


Q ss_pred             cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccC-C-C-Ccceec--ccCCCCceeCcCCCEEEEE--eC
Q 004971          366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-P-L-PDISLF--RFDGSFPSFSPKGDRIAFV--EF  438 (721)
Q Consensus       366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~-~-~~~~~~--~~~~~~~~~SpDG~~la~~--~~  438 (721)
                      . .......++++|+|++|+.+....        ..+.+.++.. + . ..+...  .......+++|||+++++.  ..
T Consensus        77 ~-~~~~p~~i~~~~~g~~l~v~~~~~--------~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~  147 (330)
T PRK11028         77 P-LPGSPTHISTDHQGRFLFSASYNA--------NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKE  147 (330)
T ss_pred             c-CCCCceEEEECCCCCEEEEEEcCC--------CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCC
Confidence            1 123456789999999998876543        2355555532 1 1 111111  1123446799999998777  36


Q ss_pred             CcEEEEECCC-CceE-------EEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC
Q 004971          439 PGVYVVNSDG-SNRR-------QVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN  509 (721)
Q Consensus       439 ~~l~v~d~~~-g~~~-------~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~  509 (721)
                      +.|++||++. +...       .+. ......+.|+|||++++++..      ..+.+.+|+++..++ .......+...
T Consensus       148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~------~~~~v~v~~~~~~~~-~~~~~~~~~~~  220 (330)
T PRK11028        148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE------LNSSVDVWQLKDPHG-EIECVQTLDMM  220 (330)
T ss_pred             CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec------CCCEEEEEEEeCCCC-CEEEEEEEecC
Confidence            8899999975 3221       111 334668999999999999862      468899999975322 00112222211


Q ss_pred             C------CCCcceEEccCCCEEEEEEeeCCceeEEEEECC--CCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCC
Q 004971          510 G------KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE--GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP  581 (721)
Q Consensus       510 ~------~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~--~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~  581 (721)
                      +      .....+.++|||++|++....  ...|.+|+++  ++..+.+..+..+ .....+.++|||++|+.+....  
T Consensus       221 p~~~~~~~~~~~i~~~pdg~~lyv~~~~--~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~--  295 (330)
T PRK11028        221 PADFSDTRWAADIHITPDGRHLYACDRT--ASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKS--  295 (330)
T ss_pred             CCcCCCCccceeEEECCCCCEEEEecCC--CCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccC--
Confidence            1      112247799999999887432  3466666664  3332212222222 2235789999999999887542  


Q ss_pred             CCCceeEEEEecCCCceEEe
Q 004971          582 GSGSFEMYLIHPNGTGLRKL  601 (721)
Q Consensus       582 ~~~~~~i~~~d~~~~~~~~l  601 (721)
                        +.-.||.+|..++....+
T Consensus       296 --~~v~v~~~~~~~g~l~~~  313 (330)
T PRK11028        296 --HHISVYEIDGETGLLTEL  313 (330)
T ss_pred             --CcEEEEEEcCCCCcEEEc
Confidence              333444445455554433

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.62  E-value=1.5e-12  Score=136.15  Aligned_cols=451  Identities=12%  Similarity=0.029  Sum_probs=283.0

Q ss_pred             eEEeccCCCCCCCCceeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeecCCceeEEe
Q 004971           45 DIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYD  124 (721)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~  124 (721)
                      -+|.+.-.     .-..++.+|.+++....|.|+-.                          ..+++++..|+.+++|.+
T Consensus       130 ~VWdi~~~-----~~th~fkG~gGvVssl~F~~~~~--------------------------~~lL~sg~~D~~v~vwnl  178 (775)
T KOG0319|consen  130 KVWDIKNG-----YCTHSFKGHGGVVSSLLFHPHWN--------------------------RWLLASGATDGTVRVWNL  178 (775)
T ss_pred             EEEEeeCC-----EEEEEecCCCceEEEEEeCCccc--------------------------hhheeecCCCceEEEEEc
Confidence            47776531     23577889999999999999865                          157788888899888887


Q ss_pred             eeecCcccccccchhhh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccceEEEEeC
Q 004971          125 AVYYDTRRNTRSRTALE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTEL  203 (721)
Q Consensus       125 ~~~~g~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~  203 (721)
                      ..  +.    .--..+. |..     .|  ..+       ++     ++  |+..+++++.+.          -++..++
T Consensus       179 ~~--~~----tcl~~~~~H~S-----~v--tsL-------~~-----~~--d~~~~ls~~RDk----------vi~vwd~  221 (775)
T KOG0319|consen  179 ND--KR----TCLHTMILHKS-----AV--TSL-------AF-----SE--DSLELLSVGRDK----------VIIVWDL  221 (775)
T ss_pred             cc--Cc----hHHHHHHhhhh-----he--eee-------ee-----cc--CCceEEEeccCc----------EEEEeeh
Confidence            52  11    1000122 211     11  111       45     88  898888876552          4444454


Q ss_pred             CCcceEeecCC-CCCccccccCCC-----CCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEecc-CC----cc
Q 004971          204 KTGLTRRLTPY-GVADFSPAVSPS-----GKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVEN-GG----WP  272 (721)
Q Consensus       204 ~~g~~~~lt~~-~~~~~~p~~SPD-----G~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~-~~----~~  272 (721)
                      ..-+..++-|. ...+.. .+-++     |.++..+..            .+.+-.++.+++........+ +.    ..
T Consensus       222 ~~~~~l~~lp~ye~~E~v-v~l~~~~~~~~~~~~TaG~------------~g~~~~~d~es~~~~~~~~~~~~~e~~~~~  288 (775)
T KOG0319|consen  222 VQYKKLKTLPLYESLESV-VRLREELGGKGEYIITAGG------------SGVVQYWDSESGKCVYKQRQSDSEEIDHLL  288 (775)
T ss_pred             hhhhhhheechhhheeeE-EEechhcCCcceEEEEecC------------CceEEEEecccchhhhhhccCCchhhhcce
Confidence            44333332232 222222 33333     446666542            246777788777643222111 11    11


Q ss_pred             eeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCcee-ecCCCCEEEEEEecCCCCeeeEEE
Q 004971          273 CWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPAT-SPGNNKFIAVATRRPTSSYRHIEL  351 (721)
Q Consensus       273 ~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-sp~dG~~la~~~~~~g~~~~~l~l  351 (721)
                      .-..+++++..  .. +..+-+|   ..+..      .-..++.+....+.++.| .| +.++++.+++.     ..+++
T Consensus       289 ~~~~~~~~l~v--ta-eQnl~l~---d~~~l------~i~k~ivG~ndEI~Dm~~lG~-e~~~laVATNs-----~~lr~  350 (775)
T KOG0319|consen  289 AIESMSQLLLV--TA-EQNLFLY---DEDEL------TIVKQIVGYNDEILDMKFLGP-EESHLAVATNS-----PELRL  350 (775)
T ss_pred             eccccCceEEE--Ec-cceEEEE---Ecccc------EEehhhcCCchhheeeeecCC-ccceEEEEeCC-----CceEE
Confidence            22233454332  11 3344444   22211      022233333334445554 66 77899988754     34899


Q ss_pred             EECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC----CCcceecccCCCCceeC
Q 004971          352 FDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP----LPDISLFRFDGSFPSFS  427 (721)
Q Consensus       352 ~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~S  427 (721)
                      +++.+-....+   .+|...+..+....+|..|+..+.+..       ..+|..+-...    .............++.+
T Consensus       351 y~~~~~~c~ii---~GH~e~vlSL~~~~~g~llat~sKD~s-------vilWr~~~~~~~~~~~a~~~gH~~svgava~~  420 (775)
T KOG0319|consen  351 YTLPTSYCQII---PGHTEAVLSLDVWSSGDLLATGSKDKS-------VILWRLNNNCSKSLCVAQANGHTNSVGAVAGS  420 (775)
T ss_pred             EecCCCceEEE---eCchhheeeeeecccCcEEEEecCCce-------EEEEEecCCcchhhhhhhhcccccccceeeec
Confidence            99987765533   455666666665566766766655555       45555421111    01111122223345566


Q ss_pred             cCCCE-EEEE-eCCcEEEEECCCCce----EEEe--------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEE
Q 004971          428 PKGDR-IAFV-EFPGVYVVNSDGSNR----RQVY--------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN  493 (721)
Q Consensus       428 pDG~~-la~~-~~~~l~v~d~~~g~~----~~l~--------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~  493 (721)
                      ..|-. ++.+ .+..|.+|++...+.    ..+.        +..+..++.+|+.+.++..+       .+....||.++
T Consensus       421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S-------qDktaKiW~le  493 (775)
T KOG0319|consen  421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS-------QDKTAKIWDLE  493 (775)
T ss_pred             ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc-------cccceeeeccc
Confidence            55533 3333 477899999876322    1121        45788999999999999987       57899999998


Q ss_pred             ccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEE
Q 004971          494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIA  573 (721)
Q Consensus       494 ~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~  573 (721)
                      . .    .....|..|...+..+.|+|..+.++..+.   +..|.+|.+++.+.  ++.+..+...+....|-.+|++|+
T Consensus       494 ~-~----~l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg---D~TvKIW~is~fSC--lkT~eGH~~aVlra~F~~~~~qli  563 (775)
T KOG0319|consen  494 Q-L----RLLGVLSGHTRGVWCVSFSKNDQLLATCSG---DKTVKIWSISTFSC--LKTFEGHTSAVLRASFIRNGKQLI  563 (775)
T ss_pred             C-c----eEEEEeeCCccceEEEEeccccceeEeccC---CceEEEEEecccee--eeeecCccceeEeeeeeeCCcEEE
Confidence            3 3    266788888888999999999999998887   88999999999987  888888888888899999999999


Q ss_pred             EEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       574 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      .+..++       -|.+|++.++++..-... |...++.++-+|++..++..+.++
T Consensus       564 S~~adG-------liKlWnikt~eC~~tlD~-H~DrvWaL~~~~~~~~~~tgg~Dg  611 (775)
T KOG0319|consen  564 SAGADG-------LIKLWNIKTNECEMTLDA-HNDRVWALSVSPLLDMFVTGGGDG  611 (775)
T ss_pred             eccCCC-------cEEEEeccchhhhhhhhh-ccceeEEEeecCccceeEecCCCe
Confidence            999886       899999999988766554 888899999999999776655554

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.62  E-value=8.4e-15  Score=154.33  Aligned_cols=186  Identities=16%  Similarity=0.170  Sum_probs=153.3

Q ss_pred             CCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971          420 DGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD  495 (721)
Q Consensus       420 ~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~  495 (721)
                      .+....|+||.++|+..+ +..+.+|.+.+.....+.   ...+..+.|+|-|-++|.++       .+...++|..+..
T Consensus       453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas-------~D~tArLWs~d~~  525 (707)
T KOG0263|consen  453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATAS-------HDQTARLWSTDHN  525 (707)
T ss_pred             ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecC-------CCceeeeeecccC
Confidence            345679999999998885 689999999988877776   34567889999998888775       6788899998874


Q ss_pred             CCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEE
Q 004971          496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA  575 (721)
Q Consensus       496 ~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~  575 (721)
                      .     ..+.+..+-..+....|+|+..+++..+.   +..+.+||+.+|..  ++..+.+...+..++|||+|++|+.+
T Consensus       526 ~-----PlRifaghlsDV~cv~FHPNs~Y~aTGSs---D~tVRlWDv~~G~~--VRiF~GH~~~V~al~~Sp~Gr~LaSg  595 (707)
T KOG0263|consen  526 K-----PLRIFAGHLSDVDCVSFHPNSNYVATGSS---DRTVRLWDVSTGNS--VRIFTGHKGPVTALAFSPCGRYLASG  595 (707)
T ss_pred             C-----chhhhcccccccceEEECCcccccccCCC---CceEEEEEcCCCcE--EEEecCCCCceEEEEEcCCCceEeec
Confidence            3     44555555566677999999999998876   88999999999985  66667778889999999999999999


Q ss_pred             EccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       576 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      +.++       .|.+||+.+++....... |.+.+.++.||.||..|+..+.+..
T Consensus       596 ~ed~-------~I~iWDl~~~~~v~~l~~-Ht~ti~SlsFS~dg~vLasgg~Dns  642 (707)
T KOG0263|consen  596 DEDG-------LIKIWDLANGSLVKQLKG-HTGTIYSLSFSRDGNVLASGGADNS  642 (707)
T ss_pred             ccCC-------cEEEEEcCCCcchhhhhc-ccCceeEEEEecCCCEEEecCCCCe
Confidence            9886       899999999876655443 7788899999999999998887763

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.62  E-value=8.3e-14  Score=150.54  Aligned_cols=271  Identities=16%  Similarity=0.131  Sum_probs=193.4

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      .+....||| ||++++...     .+..+.+|+..+.+...+....++...+..++|||||++|+....+..        
T Consensus       161 sv~~~~fs~-~g~~l~~~~-----~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~t--------  226 (456)
T KOG0266|consen  161 SVTCVDFSP-DGRALAAAS-----SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKT--------  226 (456)
T ss_pred             ceEEEEEcC-CCCeEEEcc-----CCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCce--------
Confidence            345578999 999987754     334488888866552233333566777899999999998887766555        


Q ss_pred             eeEEEeccCCCC---cceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEE
Q 004971          401 QLLLENIKSPLP---DISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVY  473 (721)
Q Consensus       401 ~l~~~~~~~~~~---~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~  473 (721)
                       +.++++.....   .+..........+|+|+|+.++.. .+..+++||+.+++.....   .+.+..++|++||+.|+.
T Consensus       227 -iriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s  305 (456)
T KOG0266|consen  227 -LRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVS  305 (456)
T ss_pred             -EEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEE
Confidence             55555532211   122222334567999999777777 4889999999998765443   567889999999999998


Q ss_pred             EecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCC--CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE
Q 004971          474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK--NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH  551 (721)
Q Consensus       474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~  551 (721)
                      .+       .++.+.||++.....   .....+.....  ......|+|+|++|+....   +..+.+||+..+..  +.
T Consensus       306 ~s-------~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~---d~~~~~w~l~~~~~--~~  370 (456)
T KOG0266|consen  306 AS-------YDGTIRVWDLETGSK---LCLKLLSGAENSAPVTSVQFSPNGKYLLSASL---DRTLKLWDLRSGKS--VG  370 (456)
T ss_pred             cC-------CCccEEEEECCCCce---eeeecccCCCCCCceeEEEECCCCcEEEEecC---CCeEEEEEccCCcc--ee
Confidence            85       478999999876431   00233444332  3677899999999999987   78999999998764  44


Q ss_pred             ECcCCCc---CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC-CCCcCCeEECCCCCEEEEEEe
Q 004971          552 RLTEGPW---SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS-AGRANHPYFSPDGKSIVFTSD  627 (721)
Q Consensus       552 ~l~~~~~---~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~~~~~~~SpDG~~l~~~~~  627 (721)
                      ....+..   ....+..+++|++|+.+..+.       .|++|++.++........ + ...+..+.|+|....++..+.
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~-------~v~~~~~~s~~~~~~l~~-h~~~~~~~~~~~~~~~~~~s~s~  442 (456)
T KOG0266|consen  371 TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDG-------SVYVWDSSSGGILQRLEG-HSKAAVSDLSSHPTENLIASSSF  442 (456)
T ss_pred             eecccCCcceeEecccccCCCCeEEEEeCCc-------eEEEEeCCccchhhhhcC-CCCCceeccccCCCcCeeeecCc
Confidence            4444332   234556689999999999885       899999998765554432 5 566788999999999888774


Q ss_pred             cC
Q 004971          628 YG  629 (721)
Q Consensus       628 ~~  629 (721)
                      ..
T Consensus       443 ~~  444 (456)
T KOG0266|consen  443 EG  444 (456)
T ss_pred             CC
Confidence            43

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.61  E-value=1.3e-12  Score=136.53  Aligned_cols=283  Identities=16%  Similarity=0.178  Sum_probs=168.5

Q ss_pred             eEEEEE--CCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce---ecc---c
Q 004971          348 HIELFD--LVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS---LFR---F  419 (721)
Q Consensus       348 ~l~l~d--l~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~---~  419 (721)
                      .|++++  .++++...+... ........++++|+++.|+.........     ..+....+......+.   ...   .
T Consensus        14 gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~-----g~v~~~~i~~~~g~L~~~~~~~~~g~   87 (345)
T PF10282_consen   14 GIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDS-----GGVSSYRIDPDTGTLTLLNSVPSGGS   87 (345)
T ss_dssp             EEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTT-----TEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred             cEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCC-----CCEEEEEECCCcceeEEeeeeccCCC
Confidence            355554  477776555432 2345566789999999999877653010     3344444433211222   122   1


Q ss_pred             CCCCceeCcCCCEEEEEe--CCcEEEEECCC-CceEEE---e-------------ecCceeeEEcCCCCeEEEEecCCCC
Q 004971          420 DGSFPSFSPKGDRIAFVE--FPGVYVVNSDG-SNRRQV---Y-------------FKNAFSTVWDPVREAVVYTSGGPEF  480 (721)
Q Consensus       420 ~~~~~~~SpDG~~la~~~--~~~l~v~d~~~-g~~~~l---~-------------~~~~~~~~~spdg~~la~~~~~~~~  480 (721)
                      ...+++++|||++|+.+.  .+.+.+++++. |.....   .             ......+.++|||+++++...    
T Consensus        88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl----  163 (345)
T PF10282_consen   88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL----  163 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET----
T ss_pred             CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec----
Confidence            223468899999999884  78899999875 543322   1             012347899999999998763    


Q ss_pred             CCCCCcEEEEEEEccCCCCccceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC---
Q 004971          481 ASESSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG---  556 (721)
Q Consensus       481 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~---  556 (721)
                        ....+.+|.++..... ......+.. ......+++|+|||+++++..+.++.-.++.++..++..+.+..+...   
T Consensus       164 --G~D~v~~~~~~~~~~~-l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~  240 (345)
T PF10282_consen  164 --GADRVYVYDIDDDTGK-LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG  240 (345)
T ss_dssp             --TTTEEEEEEE-TTS-T-EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred             --CCCEEEEEEEeCCCce-EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence              4567888888765520 001122222 224678899999999999988764444555555446654333332211   


Q ss_pred             ---CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec--CCCceEEeeecCC-CCCcCCeEECCCCCEEEEEEecCC
Q 004971          557 ---PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP--NGTGLRKLIQSGS-AGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       557 ---~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~--~~~~~~~l~~~~~-~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                         ......+.+||||++|+++....    .  .|.++++  .+|+++.+..... .....+++++|||++|+.+...++
T Consensus       241 ~~~~~~~~~i~ispdg~~lyvsnr~~----~--sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~  314 (345)
T PF10282_consen  241 FTGENAPAEIAISPDGRFLYVSNRGS----N--SISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN  314 (345)
T ss_dssp             SCSSSSEEEEEE-TTSSEEEEEECTT----T--EEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred             ccccCCceeEEEecCCCEEEEEeccC----C--EEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence               11346789999999988877653    2  5666665  5566655433222 334688999999999998877665


Q ss_pred             CcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       631 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      .-              .+|.+|.++|.++.+..
T Consensus       315 ~v--------------~vf~~d~~tG~l~~~~~  333 (345)
T PF10282_consen  315 TV--------------SVFDIDPDTGKLTPVGS  333 (345)
T ss_dssp             EE--------------EEEEEETTTTEEEEEEE
T ss_pred             eE--------------EEEEEeCCCCcEEEecc
Confidence            31              35566777888776654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.59  E-value=1.8e-12  Score=135.41  Aligned_cols=261  Identities=16%  Similarity=0.213  Sum_probs=160.3

Q ss_pred             CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEEC--CCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCC
Q 004971          319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDL--VKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRE  396 (721)
Q Consensus       319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl--~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~  396 (721)
                      ......++++| ++++|+...... .....|..|.+  ++++...+............++++|++++|+.+...++    
T Consensus        36 ~~~Ps~l~~~~-~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g----  109 (345)
T PF10282_consen   36 GENPSWLAVSP-DGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGG----  109 (345)
T ss_dssp             SSSECCEEE-T-TSSEEEEEETTS-STTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTT----
T ss_pred             CCCCceEEEEe-CCCEEEEEEccc-cCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCC----
Confidence            33556788999 999887764432 13344555554  44676666554333555667899999999998776544    


Q ss_pred             CCcceeEEEeccCC--CCcc---ee-----------cccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCc--eEE---
Q 004971          397 DGNNQLLLENIKSP--LPDI---SL-----------FRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSN--RRQ---  453 (721)
Q Consensus       397 ~~~~~l~~~~~~~~--~~~~---~~-----------~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~--~~~---  453 (721)
                          .+.+.++...  ....   ..           .......+.++|||+++++.  +...|++++++...  ...   
T Consensus       110 ----~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~  185 (345)
T PF10282_consen  110 ----SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS  185 (345)
T ss_dssp             ----EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE
T ss_pred             ----eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec
Confidence                3444444332  1111   00           01112246889999999887  46789999987654  332   


Q ss_pred             Ee---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC--C----CCCcceEEccCCCE
Q 004971          454 VY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN--G----KNNAFPSVSPDGKW  524 (721)
Q Consensus       454 l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~--~----~~~~~~~~SpDg~~  524 (721)
                      +.   ....+++.|+|||+++++...      ..+.+.++.++...+ .......+...  .    .....+++||||++
T Consensus       186 ~~~~~G~GPRh~~f~pdg~~~Yv~~e------~s~~v~v~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~  258 (345)
T PF10282_consen  186 IKVPPGSGPRHLAFSPDGKYAYVVNE------LSNTVSVFDYDPSDG-SLTEIQTISTLPEGFTGENAPAEIAISPDGRF  258 (345)
T ss_dssp             EECSTTSSEEEEEE-TTSSEEEEEET------TTTEEEEEEEETTTT-EEEEEEEEESCETTSCSSSSEEEEEE-TTSSE
T ss_pred             cccccCCCCcEEEEcCCcCEEEEecC------CCCcEEEEeecccCC-ceeEEEEeeeccccccccCCceeEEEecCCCE
Confidence            22   346789999999999999873      578889998884332 01112222221  1    13456799999999


Q ss_pred             EEEEEeeCCceeEEEEEC--CCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971          525 IVFRSTRTGYKNLYIMDA--EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI  602 (721)
Q Consensus       525 l~~~s~~~g~~~l~~~d~--~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  602 (721)
                      |++....  ...|.++++  .+|+.+.+..+.........++++|||++|+++....    +.-.+|.+|.++|.+..+.
T Consensus       259 lyvsnr~--~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s----~~v~vf~~d~~tG~l~~~~  332 (345)
T PF10282_consen  259 LYVSNRG--SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS----NTVSVFDIDPDTGKLTPVG  332 (345)
T ss_dssp             EEEEECT--TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT----TEEEEEEEETTTTEEEEEE
T ss_pred             EEEEecc--CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC----CeEEEEEEeCCCCcEEEec
Confidence            8877654  345555555  5677544444444333357899999999999988763    5567777787888776654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=1.2e-11  Score=128.46  Aligned_cols=391  Identities=15%  Similarity=0.135  Sum_probs=223.3

Q ss_pred             eEEEEeCCCcceE-eecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeE--EEe-ccCC--
Q 004971          197 AVYSTELKTGLTR-RLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRV--KIV-ENGG--  270 (721)
Q Consensus       197 ~l~~v~~~~g~~~-~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~--l~~-~~~~--  270 (721)
                      .|--+|+.+++.. .+...++.....+.+|.++.++...++            +-++.+....++.+-  +.. ..+.  
T Consensus        91 ~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcdd------------Gvl~~~s~~p~~I~~~r~l~rq~sRvL  158 (691)
T KOG2048|consen   91 SITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDD------------GVLYDFSIGPDKITYKRSLMRQKSRVL  158 (691)
T ss_pred             eEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCC------------ceEEEEecCCceEEEEeecccccceEE
Confidence            6667777666554 444556666666888888888885432            346666555544221  111 1122  


Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCC--------CCCcccCceeecCCCCEEEEEEecC
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP--------PGLHAFTPATSPGNNKFIAVATRRP  342 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~sp~dG~~la~~~~~~  342 (721)
                      ...|.+++.-++  ....||.+.+|++....         ....++.        ...-+.++.+-. |+. |+.     
T Consensus       159 slsw~~~~~~i~--~Gs~Dg~Iriwd~~~~~---------t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~t-I~s-----  220 (691)
T KOG2048|consen  159 SLSWNPTGTKIA--GGSIDGVIRIWDVKSGQ---------TLHIITMQLDRLSKREPTIVWSVLFLR-DST-IAS-----  220 (691)
T ss_pred             EEEecCCccEEE--ecccCceEEEEEcCCCc---------eEEEeeecccccccCCceEEEEEEEee-cCc-EEE-----
Confidence            458999987445  23447889999654433         2221111        111233444444 553 443     


Q ss_pred             CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC--CCCCcceeEEEeccC--CC---Ccc-
Q 004971          343 TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST--REDGNNQLLLENIKS--PL---PDI-  414 (721)
Q Consensus       343 g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~--~~~~~~~l~~~~~~~--~~---~~~-  414 (721)
                      |...+.+..||.+.+..  +.....+..++..++.++++.+++.+..++...  ...+...-|+.....  +.   +.+ 
T Consensus       221 gDS~G~V~FWd~~~gTL--iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~a  298 (691)
T KOG2048|consen  221 GDSAGTVTFWDSIFGTL--IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMA  298 (691)
T ss_pred             ecCCceEEEEcccCcch--hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeee
Confidence            23455699999999874  333455678888889999888887766555421  000000001111100  00   000 


Q ss_pred             -------------eec--c--c----CCCCc---------eeCcCCCEEEEEeCCcEEEEECCCC------ceE---EEe
Q 004971          415 -------------SLF--R--F----DGSFP---------SFSPKGDRIAFVEFPGVYVVNSDGS------NRR---QVY  455 (721)
Q Consensus       415 -------------~~~--~--~----~~~~~---------~~SpDG~~la~~~~~~l~v~d~~~g------~~~---~l~  455 (721)
                                   +..  .  .    ....+         ..+|..+.+.+.....+.+|.+.+.      ...   .+.
T Consensus       299 v~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~  378 (691)
T KOG2048|consen  299 VIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLF  378 (691)
T ss_pred             eecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeee
Confidence                         000  0  0    00001         1122221112222334444544333      111   222


Q ss_pred             ---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC---CCCcceEEccCCCEEEEEE
Q 004971          456 ---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG---KNNAFPSVSPDGKWIVFRS  529 (721)
Q Consensus       456 ---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~SpDg~~l~~~s  529 (721)
                         ...+...+.||||++|++.+        -....||++..+..   ..++.+....   .......|+-|+..+++.+
T Consensus       379 ~k~~~nIs~~aiSPdg~~Ia~st--------~~~~~iy~L~~~~~---vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s  447 (691)
T KOG2048|consen  379 TKEKENISCAAISPDGNLIAIST--------VSRTKIYRLQPDPN---VKVINVDDVPLALLDASAISFTIDKNKLFLVS  447 (691)
T ss_pred             cCCccceeeeccCCCCCEEEEee--------ccceEEEEeccCcc---eeEEEeccchhhhccceeeEEEecCceEEEEe
Confidence               45677889999999999986        35678888876543   2333333322   2445678999999998888


Q ss_pred             eeCCceeEEEEECCCCcccceEECcCC--CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCC
Q 004971          530 TRTGYKNLYIMDAEGGEGYGLHRLTEG--PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA  607 (721)
Q Consensus       530 ~~~g~~~l~~~d~~~g~~~~~~~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~  607 (721)
                      ..  ...|..+++++...+.+..+...  ...+..++.||||++|+..+..+       .|++|++.+++...+... ..
T Consensus       448 ~~--~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g-------~I~v~nl~~~~~~~l~~r-ln  517 (691)
T KOG2048|consen  448 KN--IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRG-------QIFVYNLETLESHLLKVR-LN  517 (691)
T ss_pred             cc--cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccc-------eEEEEEcccceeecchhc-cC
Confidence            32  56788888887664444444332  33467899999999999999775       899999999887766532 34


Q ss_pred             CCcCCeEECCC-CCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971          608 GRANHPYFSPD-GKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       608 ~~~~~~~~SpD-G~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  657 (721)
                      ..+...+++|. -..|+.+..++                 ++|-+|+...+
T Consensus       518 ~~vTa~~~~~~~~~~lvvats~n-----------------Qv~efdi~~~~  551 (691)
T KOG2048|consen  518 IDVTAAAFSPFVRNRLVVATSNN-----------------QVFEFDIEARN  551 (691)
T ss_pred             cceeeeeccccccCcEEEEecCC-----------------eEEEEecchhh
Confidence            56777888854 45566655543                 58888884433

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.58  E-value=4.9e-13  Score=128.78  Aligned_cols=303  Identities=11%  Similarity=0.056  Sum_probs=208.9

Q ss_pred             eEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeC
Q 004971          312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRG  391 (721)
Q Consensus       312 ~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~  391 (721)
                      ...+..|...+..++.+| +.++++.     |+.+..-++|+..+|+  .+....+|...+....||.||.+|+.....+
T Consensus        57 ~~tF~~H~~svFavsl~P-~~~l~aT-----GGgDD~AflW~~~~ge--~~~eltgHKDSVt~~~FshdgtlLATGdmsG  128 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHP-NNNLVAT-----GGGDDLAFLWDISTGE--FAGELTGHKDSVTCCSFSHDGTLLATGDMSG  128 (399)
T ss_pred             eeehhhcCCceEEEEeCC-CCceEEe-----cCCCceEEEEEccCCc--ceeEecCCCCceEEEEEccCceEEEecCCCc
Confidence            344555666778889999 8887776     4455557999999998  5556677888999999999999998865555


Q ss_pred             CCCCCCCcceeEEEeccCCCCcceec--ccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe---ecCceeeEEc
Q 004971          392 GSTREDGNNQLLLENIKSPLPDISLF--RFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFSTVWD  465 (721)
Q Consensus       392 ~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~~~s  465 (721)
                      .         +.+....++.......  -....-+.|+|-+..|++. .++.+|+|.+..+...++.   ...+..-.|.
T Consensus       129 ~---------v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~  199 (399)
T KOG0296|consen  129 K---------VLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI  199 (399)
T ss_pred             c---------EEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccccc
Confidence            4         3444444433222221  1222346889988877776 4889999999886555555   3456678899


Q ss_pred             CCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCC
Q 004971          466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG  544 (721)
Q Consensus       466 pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~  544 (721)
                      |||++++...       .++.+.+|......     ...+++... .......++-++..++-.+.   ....++.+..+
T Consensus       200 pdGKr~~tgy-------~dgti~~Wn~ktg~-----p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~---e~~~~~~~~~s  264 (399)
T KOG0296|consen  200 PDGKRILTGY-------DDGTIIVWNPKTGQ-----PLHKITQAEGLELPCISLNLAGSTLTKGNS---EGVACGVNNGS  264 (399)
T ss_pred             CCCceEEEEe-------cCceEEEEecCCCc-----eeEEecccccCcCCccccccccceeEeccC---CccEEEEcccc
Confidence            9999999886       57899999987653     555565433 22333566666665443333   44566666666


Q ss_pred             CcccceEECcC---------C---CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCC
Q 004971          545 GEGYGLHRLTE---------G---PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH  612 (721)
Q Consensus       545 g~~~~~~~l~~---------~---~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~  612 (721)
                      |+   +.....         .   ...+..+.||.+=...|+++-++       +|.+||.+..++|....  +...+..
T Consensus       265 gK---Vv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG-------~i~iyD~a~~~~R~~c~--he~~V~~  332 (399)
T KOG0296|consen  265 GK---VVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDG-------TIAIYDLAASTLRHICE--HEDGVTK  332 (399)
T ss_pred             ce---EEEecCCCCccccccchhhhhhhhhcccccccchhhcccccc-------eEEEEecccchhheecc--CCCceEE
Confidence            65   222222         1   11234455666655566666665       89999999998887765  6677889


Q ss_pred             eEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-EeccCCCCCCCceecCC
Q 004971          613 PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       613 ~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt~~~~~~~~~~~sp~  676 (721)
                      +.|-+ -.+|+....++                 .|++||..+|+.+ ..+.|...+...+.+|+
T Consensus       333 l~w~~-t~~l~t~c~~g-----------------~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~  379 (399)
T KOG0296|consen  333 LKWLN-TDYLLTACANG-----------------KVRQWDARTGQLKFTYTGHQMGILDFALSPQ  379 (399)
T ss_pred             EEEcC-cchheeeccCc-----------------eEEeeeccccceEEEEecCchheeEEEEcCC
Confidence            99998 56777666554                 3999999998875 77888888888899985

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.58  E-value=1.4e-14  Score=141.11  Aligned_cols=266  Identities=12%  Similarity=0.064  Sum_probs=195.3

Q ss_pred             cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCC
Q 004971          371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGS  449 (721)
Q Consensus       371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g  449 (721)
                      .+..+.|.|+|++|+..+..+.       ..+|-...-.-+.-+......++.+.||++|.+++... ++-|.+|+..-.
T Consensus        98 ~V~~v~WtPeGRRLltgs~SGE-------FtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn  170 (464)
T KOG0284|consen   98 PVNVVRWTPEGRRLLTGSQSGE-------FTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN  170 (464)
T ss_pred             ceeeEEEcCCCceeEeeccccc-------EEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence            3556899999999999887776       33442211000111222344566789999999998885 677889988766


Q ss_pred             ceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEE
Q 004971          450 NRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV  526 (721)
Q Consensus       450 ~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~  526 (721)
                      ..+.+.   ...++.++|||....++.++       +++.+.||+.....     +.+.|..+...+..+.|+|.-..|+
T Consensus       171 nVk~~~ahh~eaIRdlafSpnDskF~t~S-------dDg~ikiWdf~~~k-----ee~vL~GHgwdVksvdWHP~kgLia  238 (464)
T KOG0284|consen  171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCS-------DDGTIKIWDFRMPK-----EERVLRGHGWDVKSVDWHPTKGLIA  238 (464)
T ss_pred             hhHHhhHhhhhhhheeccCCCCceeEEec-------CCCeEEEEeccCCc-----hhheeccCCCCcceeccCCccceeE
Confidence            555444   46789999999888888876       68999999987654     5677888888899999999987777


Q ss_pred             EEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC
Q 004971          527 FRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS  606 (721)
Q Consensus       527 ~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~  606 (721)
                      ..+.   +.-+.+||..+|+.  +..+..+...+..+.|+|+|.+|+..+.+.       .+.++|+.+-+...... +|
T Consensus       239 sgsk---DnlVKlWDprSg~c--l~tlh~HKntVl~~~f~~n~N~Llt~skD~-------~~kv~DiR~mkEl~~~r-~H  305 (464)
T KOG0284|consen  239 SGSK---DNLVKLWDPRSGSC--LATLHGHKNTVLAVKFNPNGNWLLTGSKDQ-------SCKVFDIRTMKELFTYR-GH  305 (464)
T ss_pred             EccC---CceeEeecCCCcch--hhhhhhccceEEEEEEcCCCCeeEEccCCc-------eEEEEehhHhHHHHHhh-cc
Confidence            7665   55899999999987  777777778889999999999999999885       89999998544333333 26


Q ss_pred             CCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-Eec-cCCCCCCCceecCC--cCCccc
Q 004971          607 AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLT-QNSFEDGTPAWGPR--FIRPVD  682 (721)
Q Consensus       607 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt-~~~~~~~~~~~sp~--~l~~~~  682 (721)
                      ...+..+.|+|=-.-|+.+...++                .|+.|.+...+.. .+. .|...+++.+|.|.  +|+.++
T Consensus       306 kkdv~~~~WhP~~~~lftsgg~Dg----------------svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgs  369 (464)
T KOG0284|consen  306 KKDVTSLTWHPLNESLFTSGGSDG----------------SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGS  369 (464)
T ss_pred             hhhheeeccccccccceeeccCCC----------------ceEEEeccccccccCCCcccccceeeeeccccceeEeecC
Confidence            778889999998877766655443                3777776644433 232 26677889999995  566665


Q ss_pred             cc
Q 004971          683 VE  684 (721)
Q Consensus       683 ~~  684 (721)
                      -+
T Consensus       370 nd  371 (464)
T KOG0284|consen  370 ND  371 (464)
T ss_pred             CC
Confidence            54

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.58  E-value=2.9e-12  Score=123.55  Aligned_cols=312  Identities=11%  Similarity=0.046  Sum_probs=206.8

Q ss_pred             EeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCcee-EEEeccCC--cceeccCCeEEEEec
Q 004971          209 RRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQR-VKIVENGG--WPCWVDESTLFFHRK  285 (721)
Q Consensus       209 ~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~--~~~ws~dg~l~~~~~  285 (721)
                      .-+..|....+..+.+|+-+++|...-            ...-|+|+..+|+.. .++.++..  ...|+.||.+++  .
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~aTGGg------------DD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLA--T  123 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVATGGG------------DDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLA--T  123 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEEecCC------------CceEEEEEccCCcceeEecCCCCceEEEEEccCceEEE--e
Confidence            344566666777788997777776432            346788898888833 33344443  458999999888  4


Q ss_pred             cCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc
Q 004971          286 SEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF  365 (721)
Q Consensus       286 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~  365 (721)
                      .+.+|.+.||.+....         ....+......+..+.|.| -+..+++     |..+..+|.|.+.++...++.  
T Consensus       124 GdmsG~v~v~~~stg~---------~~~~~~~e~~dieWl~WHp-~a~illA-----G~~DGsvWmw~ip~~~~~kv~--  186 (399)
T KOG0296|consen  124 GDMSGKVLVFKVSTGG---------EQWKLDQEVEDIEWLKWHP-RAHILLA-----GSTDGSVWMWQIPSQALCKVM--  186 (399)
T ss_pred             cCCCccEEEEEcccCc---------eEEEeecccCceEEEEecc-cccEEEe-----ecCCCcEEEEECCCcceeeEe--
Confidence            6668999999553332         3344433444567889999 9987776     445667999999886544443  


Q ss_pred             cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccC---CCCceeCcCCCEEEEE-eCCcE
Q 004971          366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFD---GSFPSFSPKGDRIAFV-EFPGV  441 (721)
Q Consensus       366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~SpDG~~la~~-~~~~l  441 (721)
                      .++......-.|.|||++++....++.         +.+++++++..........   ...+.++.+|..+.-. ....+
T Consensus       187 ~Gh~~~ct~G~f~pdGKr~~tgy~dgt---------i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~  257 (399)
T KOG0296|consen  187 SGHNSPCTCGEFIPDGKRILTGYDDGT---------IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA  257 (399)
T ss_pred             cCCCCCcccccccCCCceEEEEecCce---------EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccE
Confidence            556777778899999999998766554         5666666553222211111   1123455556544433 35556


Q ss_pred             EEEECCCCceEEEee--------------cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc
Q 004971          442 YVVNSDGSNRRQVYF--------------KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT  507 (721)
Q Consensus       442 ~v~d~~~g~~~~l~~--------------~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~  507 (721)
                      ++.+..+|+......              ..+..+.||.+=...|..+       -++++.||++...      .++.+-
T Consensus       258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~-------vdG~i~iyD~a~~------~~R~~c  324 (399)
T KOG0296|consen  258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS-------VDGTIAIYDLAAS------TLRHIC  324 (399)
T ss_pred             EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc-------ccceEEEEecccc------hhheec
Confidence            666666655443331              1222344444444444433       5789999988764      455566


Q ss_pred             cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971          508 TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD  579 (721)
Q Consensus       508 ~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~  579 (721)
                      .+...+..+.|-+ ..+|+....   +..|+.||..+|..  ....+.+...+..++++||++.++..+.+.
T Consensus       325 ~he~~V~~l~w~~-t~~l~t~c~---~g~v~~wDaRtG~l--~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~  390 (399)
T KOG0296|consen  325 EHEDGVTKLKWLN-TDYLLTACA---NGKVRQWDARTGQL--KFTYTGHQMGILDFALSPQKRLVVTVSDDN  390 (399)
T ss_pred             cCCCceEEEEEcC-cchheeecc---CceEEeeeccccce--EEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence            6666788899998 677887776   78999999999996  667778888889999999999998888774

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.57  E-value=5.7e-13  Score=125.11  Aligned_cols=277  Identities=13%  Similarity=0.103  Sum_probs=196.8

Q ss_pred             EeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971          314 RVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS  393 (721)
Q Consensus       314 ~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~  393 (721)
                      .+..+...+..+.|+| +|..++.     ++.+..|++|+.... ........+|.+.+..+.|.+|+..|+.++.+.. 
T Consensus        42 ~l~gh~geI~~~~F~P-~gs~~aS-----gG~Dr~I~LWnv~gd-ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~-  113 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHP-DGSCFAS-----GGSDRAIVLWNVYGD-CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKT-  113 (338)
T ss_pred             hcCCCcceEEEEEECC-CCCeEee-----cCCcceEEEEecccc-ccceeeeccccceeEeeeeccCCCEEEEecCCce-
Confidence            3455666788899999 9998887     557788999997543 3333444577888999999999999998776655 


Q ss_pred             CCCCCcceeEEEeccCCCCcceecccCC---CCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe--ecCceeeEEcC
Q 004971          394 TREDGNNQLLLENIKSPLPDISLFRFDG---SFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDP  466 (721)
Q Consensus       394 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~--~~~~~~~~~sp  466 (721)
                              +..+|..++... .......   ..+.-+.-|..++..  .++.+.+||+...+..+..  ....+.+.|..
T Consensus       114 --------v~~wD~~tG~~~-rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d  184 (338)
T KOG0265|consen  114 --------VRGWDAETGKRI-RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD  184 (338)
T ss_pred             --------EEEEecccceee-ehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecc
Confidence                    556666555221 1111111   112233335555555  3788999999887765555  55678899999


Q ss_pred             CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971          467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE  546 (721)
Q Consensus       467 dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~  546 (721)
                      ++..+....       -++.+++|++..+.     ....+..+...+.++..||+|.++...+.   +..+.+||..--.
T Consensus       185 ~s~qv~sgg-------Idn~ikvWd~r~~d-----~~~~lsGh~DtIt~lsls~~gs~llsnsM---d~tvrvwd~rp~~  249 (338)
T KOG0265|consen  185 TSDQVISGG-------IDNDIKVWDLRKND-----GLYTLSGHADTITGLSLSRYGSFLLSNSM---DNTVRVWDVRPFA  249 (338)
T ss_pred             cccceeecc-------ccCceeeeccccCc-----ceEEeecccCceeeEEeccCCCccccccc---cceEEEEEecccC
Confidence            998887764       46889999986554     55677777788999999999999998887   7899999986432


Q ss_pred             ccce-EECcCC---CcC--ceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCC
Q 004971          547 GYGL-HRLTEG---PWS--DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK  620 (721)
Q Consensus       547 ~~~~-~~l~~~---~~~--~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~  620 (721)
                      +.+. ..+..+   ...  .-..+|||+++.+-+++.+.       .+|+||..+....-. .+++.+.+..+.|.|...
T Consensus       250 p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr-------~vyvwd~~~r~~lyk-lpGh~gsvn~~~Fhp~e~  321 (338)
T KOG0265|consen  250 PSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR-------FVYVWDTTSRRILYK-LPGHYGSVNEVDFHPTEP  321 (338)
T ss_pred             CCCceEEEeecchhhhhhhcceeeccCCCCccccccccc-------eEEEeecccccEEEE-cCCcceeEEEeeecCCCc
Confidence            2111 223222   121  23568999999999888875       899999877543322 235888999999999999


Q ss_pred             EEEEEEecCC
Q 004971          621 SIVFTSDYGG  630 (721)
Q Consensus       621 ~l~~~~~~~~  630 (721)
                      .|...+.+.+
T Consensus       322 iils~~sdk~  331 (338)
T KOG0265|consen  322 IILSCSSDKT  331 (338)
T ss_pred             EEEEeccCce
Confidence            9888887764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=5.1e-12  Score=120.05  Aligned_cols=265  Identities=16%  Similarity=0.164  Sum_probs=176.5

Q ss_pred             CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC--CcceecccCCCCceeCcCCCEEEEE---eCCcEEE
Q 004971          369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL--PDISLFRFDGSFPSFSPKGDRIAFV---EFPGVYV  443 (721)
Q Consensus       369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~SpDG~~la~~---~~~~l~v  443 (721)
                      ...+..+.|+++|..++..+.++.         +.+++...+.  ..+...........|......+.+.   .+..|..
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDs---------l~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDS---------LRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCe---------EEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence            455677899999999998666555         4445544432  2222223334445665445555555   2678999


Q ss_pred             EECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc
Q 004971          444 VNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP  520 (721)
Q Consensus       444 ~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp  520 (721)
                      +++.+.+..+.+   ...+..+..+|-+..++.++       .+..+++|++....     ..-.+...  ...-++|.|
T Consensus        85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S-------~D~tvrLWDlR~~~-----cqg~l~~~--~~pi~AfDp  150 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSS-------LDKTVRLWDLRVKK-----CQGLLNLS--GRPIAAFDP  150 (311)
T ss_pred             EEeecCceEEEcCCCCceEEEEEecCCCCeEEecc-------cCCeEEeeEecCCC-----CceEEecC--CCcceeECC
Confidence            999888876666   44678899999988777765       57899999998654     22222222  234579999


Q ss_pred             CCCEEEEEEeeCCceeEEEEECCCCcccceE--ECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971          521 DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH--RLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG  597 (721)
Q Consensus       521 Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~--~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~  597 (721)
                      .|-.+|.+..   ...|.++|+..-...+..  .+. ........+.|||||+.|+.+....       .++++|.=.|.
T Consensus       151 ~GLifA~~~~---~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s-------~~~~lDAf~G~  220 (311)
T KOG1446|consen  151 EGLIFALANG---SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS-------FIYLLDAFDGT  220 (311)
T ss_pred             CCcEEEEecC---CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC-------cEEEEEccCCc
Confidence            9988887775   348888888643211122  223 1233457899999999999999875       89999998887


Q ss_pred             eEEeeecC-CCC-CcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-Eecc-CCCCCCCcee
Q 004971          598 LRKLIQSG-SAG-RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLTQ-NSFEDGTPAW  673 (721)
Q Consensus       598 ~~~l~~~~-~~~-~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt~-~~~~~~~~~~  673 (721)
                      ...-.... ... ..-...|+|||++|+..+.++                 .|++|++++++.. .+.. +.+....+.|
T Consensus       221 ~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg-----------------~i~vw~~~tg~~v~~~~~~~~~~~~~~~f  283 (311)
T KOG1446|consen  221 VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDG-----------------TIHVWNLETGKKVAVLRGPNGGPVSCVRF  283 (311)
T ss_pred             EeeeEeeccCCCCcceeEEECCCCcEEEEecCCC-----------------cEEEEEcCCCcEeeEecCCCCCCcccccc
Confidence            54433211 111 124678999999988777665                 3999999888655 4444 3566777889


Q ss_pred             cCCcCCcccc
Q 004971          674 GPRFIRPVDV  683 (721)
Q Consensus       674 sp~~l~~~~~  683 (721)
                      .|...++++.
T Consensus       284 nP~~~mf~sa  293 (311)
T KOG1446|consen  284 NPRYAMFVSA  293 (311)
T ss_pred             CCceeeeeec
Confidence            9976555543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.55  E-value=1.3e-12  Score=120.45  Aligned_cols=265  Identities=15%  Similarity=0.154  Sum_probs=177.9

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      ..+|.-||+-+..  ..-+....+|.+....-.       ......++...+..++|+|...+.++.++     .+..|.
T Consensus        25 Sv~wn~~g~~las--gs~dktv~v~n~e~~r~~-------~~~~~~gh~~svdql~w~~~~~d~~atas-----~dk~ir   90 (313)
T KOG1407|consen   25 SVAWNCDGTKLAS--GSFDKTVSVWNLERDRFR-------KELVYRGHTDSVDQLCWDPKHPDLFATAS-----GDKTIR   90 (313)
T ss_pred             EEEEcccCceeee--cccCCceEEEEecchhhh-------hhhcccCCCcchhhheeCCCCCcceEEec-----CCceEE
Confidence            4589989876553  222677778865443211       11112234445678889883334454433     234599


Q ss_pred             EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccC-CCCcceecccCCCCceeCcC
Q 004971          351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPK  429 (721)
Q Consensus       351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~SpD  429 (721)
                      +||..+++.......   .+......|||+|+++++...++.         +...+.+. ....-...........|+.+
T Consensus        91 ~wd~r~~k~~~~i~~---~~eni~i~wsp~g~~~~~~~kdD~---------it~id~r~~~~~~~~~~~~e~ne~~w~~~  158 (313)
T KOG1407|consen   91 IWDIRSGKCTARIET---KGENINITWSPDGEYIAVGNKDDR---------ITFIDARTYKIVNEEQFKFEVNEISWNNS  158 (313)
T ss_pred             EEEeccCcEEEEeec---cCcceEEEEcCCCCEEEEecCccc---------EEEEEecccceeehhcccceeeeeeecCC
Confidence            999999986554432   334456899999999998765554         33333322 21122223334455788866


Q ss_pred             CCEEEEE-eCCcEEEEECCCCceE-EEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE
Q 004971          430 GDRIAFV-EFPGVYVVNSDGSNRR-QVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR  505 (721)
Q Consensus       430 G~~la~~-~~~~l~v~d~~~g~~~-~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  505 (721)
                      +..+... +.+.|.++....-++. .|.  +.....+.|+|+|+++|+.+       .+.-+.||+++.-     ..++.
T Consensus       159 nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~Gs-------ADAlvSLWD~~EL-----iC~R~  226 (313)
T KOG1407|consen  159 NDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGS-------ADALVSLWDVDEL-----ICERC  226 (313)
T ss_pred             CCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecc-------ccceeeccChhHh-----hhhee
Confidence            6544444 3577887776544432 233  55677899999999999986       5788999998743     36788


Q ss_pred             cccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971          506 LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD  579 (721)
Q Consensus       506 l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~  579 (721)
                      ++..+..+..+.||-||++|+.+++   +.-|=+.++++|..  +.++.. .+....++|.|..-.|||+..+.
T Consensus       227 isRldwpVRTlSFS~dg~~lASaSE---Dh~IDIA~vetGd~--~~eI~~-~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  227 ISRLDWPVRTLSFSHDGRMLASASE---DHFIDIAEVETGDR--VWEIPC-EGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             eccccCceEEEEeccCcceeeccCc---cceEEeEecccCCe--EEEeec-cCCceeEEecCCCceeeEEecCC
Confidence            8888999999999999999999997   77788888999885  555553 33447899999999999999875

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=3.2e-13  Score=133.70  Aligned_cols=276  Identities=12%  Similarity=0.115  Sum_probs=183.0

Q ss_pred             CcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971          320 LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN  399 (721)
Q Consensus       320 ~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~  399 (721)
                      ..+..+.|.| .-..+..+.     -++.+.+|.++......+....-....+....|.|+|...++.+.+..       
T Consensus       214 ~~I~sv~FHp-~~plllvaG-----~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrk-------  280 (514)
T KOG2055|consen  214 GGITSVQFHP-TAPLLLVAG-----LDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRK-------  280 (514)
T ss_pred             CCceEEEecC-CCceEEEec-----CCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccce-------
Confidence            3567889999 776665532     334466666654332233322222455677899999995555444332       


Q ss_pred             ceeEEEeccCC-CCcceecc----cCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeE
Q 004971          400 NQLLLENIKSP-LPDISLFR----FDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAV  471 (721)
Q Consensus       400 ~~l~~~~~~~~-~~~~~~~~----~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~l  471 (721)
                       -+|.+++... ...+....    .....+.+|+|++.|++.+ .+.|+++...+++...-.  .+.+..+.|+.||+.|
T Consensus       281 -y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l  359 (514)
T KOG2055|consen  281 -YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKEL  359 (514)
T ss_pred             -EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEE
Confidence             2677777543 22222111    1234578899999999985 788999998888743322  6888999999999999


Q ss_pred             EEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECC----CCc
Q 004971          472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE----GGE  546 (721)
Q Consensus       472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~----~g~  546 (721)
                      +.++       ..+++.+|++....     ...++...+ .....++.|++|++||+.++   ..-+-+||.+    +..
T Consensus       360 ~~~~-------~~GeV~v~nl~~~~-----~~~rf~D~G~v~gts~~~S~ng~ylA~GS~---~GiVNIYd~~s~~~s~~  424 (514)
T KOG2055|consen  360 LASG-------GTGEVYVWNLRQNS-----CLHRFVDDGSVHGTSLCISLNGSYLATGSD---SGIVNIYDGNSCFASTN  424 (514)
T ss_pred             EEEc-------CCceEEEEecCCcc-----eEEEEeecCccceeeeeecCCCceEEeccC---cceEEEeccchhhccCC
Confidence            8875       46777777776653     556666544 34456889999999999986   4555566643    334


Q ss_pred             ccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec--CCCCCcCCeEECCCCCEEEE
Q 004971          547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS--GSAGRANHPYFSPDGKSIVF  624 (721)
Q Consensus       547 ~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~~~SpDG~~l~~  624 (721)
                      +++++.+..-...+..+.|+||++.|+.++..     ....+.++.+.+-.+..-.+.  ..-+.+.+++|||.|.++++
T Consensus       425 PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~-----~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAv  499 (514)
T KOG2055|consen  425 PKPIKTVDNLTTAITSLQFNHDAQILAIASRV-----KKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAV  499 (514)
T ss_pred             CCchhhhhhhheeeeeeeeCcchhhhhhhhhc-----cccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEe
Confidence            34455555555667899999999999998875     334788888876543332221  12345678999999999998


Q ss_pred             EEecC
Q 004971          625 TSDYG  629 (721)
Q Consensus       625 ~~~~~  629 (721)
                      ....+
T Consensus       500 GNe~g  504 (514)
T KOG2055|consen  500 GNEAG  504 (514)
T ss_pred             ecCCC
Confidence            66554

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.54  E-value=6.4e-13  Score=145.18  Aligned_cols=280  Identities=15%  Similarity=0.037  Sum_probs=179.4

Q ss_pred             CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCC----------ceEEeecccCCCCcccCcEEcCCCCEEEEEE
Q 004971          319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKN----------KFIELTRFVSPKTHHLNPFISPDSSRVGYHK  388 (721)
Q Consensus       319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg----------~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~  388 (721)
                      +..+..+.++| ||..++...+.   .+..+.+|+.+.=          -...+.....|.+.+.++.|||||++|+..+
T Consensus        13 ~~~IfSIdv~p-dg~~~aTgGq~---~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS   88 (942)
T KOG0973|consen   13 EKSIFSIDVHP-DGVKFATGGQV---LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS   88 (942)
T ss_pred             CeeEEEEEecC-CceeEecCCcc---ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence            33467888999 99887763211   2333557765421          0123334445677788899999999999987


Q ss_pred             eeCCCCCCCCcceeEEEec------c---CCCC---------cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCC
Q 004971          389 CRGGSTREDGNNQLLLENI------K---SPLP---------DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGS  449 (721)
Q Consensus       389 ~~~~~~~~~~~~~l~~~~~------~---~~~~---------~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g  449 (721)
                      ++.-       ..+|-...      .   ++..         .+.....+...+.||||+++++.++ +..|.+|+..+.
T Consensus        89 DD~~-------v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   89 DDRL-------VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             Ccce-------EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc
Confidence            7655       23343331      0   0110         0111233445689999999999985 889999999877


Q ss_pred             ceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC------CCCcceEEcc
Q 004971          450 NRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG------KNNAFPSVSP  520 (721)
Q Consensus       450 ~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~Sp  520 (721)
                      +...+.   ...+..+.|.|-|+++|..+       +|..+.||+...-+     ..+.++..-      .....+.|||
T Consensus       162 ~~~~vl~~H~s~VKGvs~DP~Gky~ASqs-------dDrtikvwrt~dw~-----i~k~It~pf~~~~~~T~f~RlSWSP  229 (942)
T KOG0973|consen  162 ELLKVLRGHQSLVKGVSWDPIGKYFASQS-------DDRTLKVWRTSDWG-----IEKSITKPFEESPLTTFFLRLSWSP  229 (942)
T ss_pred             eeeeeeecccccccceEECCccCeeeeec-------CCceEEEEEcccce-----eeEeeccchhhCCCcceeeecccCC
Confidence            644333   45677899999999999987       68899999965422     445555432      2345689999


Q ss_pred             CCCEEEEEEee-CCceeEEEEECCCCcccceEECcCCCcCceeeEEcc--------CCC---------EEEEEEccCCCC
Q 004971          521 DGKWIVFRSTR-TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP--------DGE---------WIAFASDRDNPG  582 (721)
Q Consensus       521 Dg~~l~~~s~~-~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~Sp--------DG~---------~l~~~~~~~~~~  582 (721)
                      ||++|+....- .+...+-+++-.+-+.  -..+..|...+.-+.|+|        +|.         -+|.++.+    
T Consensus       230 DG~~las~nA~n~~~~~~~IieR~tWk~--~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD----  303 (942)
T KOG0973|consen  230 DGHHLASPNAVNGGKSTIAIIERGTWKV--DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD----  303 (942)
T ss_pred             CcCeecchhhccCCcceeEEEecCCcee--eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC----
Confidence            99999987543 3455777777655442  334445555555666765        221         12223333    


Q ss_pred             CCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          583 SGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       583 ~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                         ..|-+|.....++.-+...-....+.+++|||||-.|+..+.+++
T Consensus       304 ---rSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGt  348 (942)
T KOG0973|consen  304 ---RSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGT  348 (942)
T ss_pred             ---ccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCe
Confidence               489999864443333322224456788999999999999898875

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.54  E-value=4.6e-11  Score=125.30  Aligned_cols=270  Identities=15%  Similarity=0.065  Sum_probs=189.3

Q ss_pred             CCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971          316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR  395 (721)
Q Consensus       316 ~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~  395 (721)
                      .+|...+..+++|. |...++.  ..    ...|.+|+..+.+...-  ..  ...+....|-|.+++|+.....+.   
T Consensus       370 ~GHR~dVRsl~vS~-d~~~~~S--ga----~~SikiWn~~t~kciRT--i~--~~y~l~~~Fvpgd~~Iv~G~k~Ge---  435 (888)
T KOG0306|consen  370 GGHRSDVRSLCVSS-DSILLAS--GA----GESIKIWNRDTLKCIRT--IT--CGYILASKFVPGDRYIVLGTKNGE---  435 (888)
T ss_pred             ccchhheeEEEeec-Cceeeee--cC----CCcEEEEEccCcceeEE--ec--cccEEEEEecCCCceEEEeccCCc---
Confidence            34556788899987 6644433  22    23499999998874332  22  235667788898988887654443   


Q ss_pred             CCCcceeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECC-----CCce---------EEEe-ec
Q 004971          396 EDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSD-----GSNR---------RQVY-FK  457 (721)
Q Consensus       396 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~-----~g~~---------~~l~-~~  457 (721)
                            +-+.++.+.  ...+.........++.+||++..+..+ +..+..||..     .|..         +.|. ..
T Consensus       436 ------l~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d  509 (888)
T KOG0306|consen  436 ------LQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED  509 (888)
T ss_pred             ------eEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccc
Confidence                  455555443  222232333345578899999988885 6677777753     1222         2233 56


Q ss_pred             CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeE
Q 004971          458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL  537 (721)
Q Consensus       458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l  537 (721)
                      .+..+.+||||++|++.-       -+.++.||-++.-.     -.-.|-.|.-.+..+.+|||++.|+..+.   +..+
T Consensus       510 dvL~v~~Spdgk~LaVsL-------LdnTVkVyflDtlK-----FflsLYGHkLPV~smDIS~DSklivTgSA---DKnV  574 (888)
T KOG0306|consen  510 DVLCVSVSPDGKLLAVSL-------LDNTVKVYFLDTLK-----FFLSLYGHKLPVLSMDISPDSKLIVTGSA---DKNV  574 (888)
T ss_pred             cEEEEEEcCCCcEEEEEe-------ccCeEEEEEeccee-----eeeeecccccceeEEeccCCcCeEEeccC---CCce
Confidence            788999999999999985       57899999998643     23345566678888999999999999887   7889


Q ss_pred             EEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC
Q 004971          538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP  617 (721)
Q Consensus       538 ~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp  617 (721)
                      .+|-++=|.+  -+-+..+...+..+.|-|+. ++.|+....      ..+..||-+.=+..+... +|...++..+.+|
T Consensus       575 KiWGLdFGDC--HKS~fAHdDSvm~V~F~P~~-~~FFt~gKD------~kvKqWDg~kFe~iq~L~-~H~~ev~cLav~~  644 (888)
T KOG0306|consen  575 KIWGLDFGDC--HKSFFAHDDSVMSVQFLPKT-HLFFTCGKD------GKVKQWDGEKFEEIQKLD-GHHSEVWCLAVSP  644 (888)
T ss_pred             EEeccccchh--hhhhhcccCceeEEEEcccc-eeEEEecCc------ceEEeechhhhhhheeec-cchheeeeeEEcC
Confidence            9999887875  44566777777899999964 566666543      389999976655444443 3777889999999


Q ss_pred             CCCEEEEEEecCC
Q 004971          618 DGKSIVFTSDYGG  630 (721)
Q Consensus       618 DG~~l~~~~~~~~  630 (721)
                      +|.+++..+.+..
T Consensus       645 ~G~~vvs~shD~s  657 (888)
T KOG0306|consen  645 NGSFVVSSSHDKS  657 (888)
T ss_pred             CCCeEEeccCCce
Confidence            9999998887664

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.52  E-value=4.9e-12  Score=147.44  Aligned_cols=274  Identities=11%  Similarity=0.073  Sum_probs=178.7

Q ss_pred             CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce------EEeecccCCCCcccCcEEcCC-CCEEEEEEee
Q 004971          318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF------IELTRFVSPKTHHLNPFISPD-SSRVGYHKCR  390 (721)
Q Consensus       318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~------~~l~~~~~~~~~~~~~~~Spd-g~~l~~~~~~  390 (721)
                      +...+..++|+| +|++++...     .+..|.+||+.+...      ..+.... ....+..++|++. +..|+....+
T Consensus       482 ~~~~V~~i~fs~-dg~~latgg-----~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~D  554 (793)
T PLN00181        482 SSNLVCAIGFDR-DGEFFATAG-----VNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFE  554 (793)
T ss_pred             CCCcEEEEEECC-CCCEEEEEe-----CCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCC
Confidence            444577889999 999888743     455699999754210      0111111 1234567888875 6677665554


Q ss_pred             CCCCCCCCcceeEEEeccCCCC--cceecccCCCCceeCc-CCCEEEEEe-CCcEEEEECCCCceEE-Ee-ecCceeeEE
Q 004971          391 GGSTREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSP-KGDRIAFVE-FPGVYVVNSDGSNRRQ-VY-FKNAFSTVW  464 (721)
Q Consensus       391 ~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~Sp-DG~~la~~~-~~~l~v~d~~~g~~~~-l~-~~~~~~~~~  464 (721)
                      +.         +.++++.++..  .+.........++|+| ++..|+..+ ++.|.+||+.++.... +. ...+..+.|
T Consensus       555 g~---------v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~  625 (793)
T PLN00181        555 GV---------VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQF  625 (793)
T ss_pred             Ce---------EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEE
Confidence            43         55666554321  1111222344578986 788777774 7889999998776432 22 345667788


Q ss_pred             -cCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC
Q 004971          465 -DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE  543 (721)
Q Consensus       465 -spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~  543 (721)
                       +++|..|++.+       .++.+.+|++.....    ....+..+...+..+.|+ ++..|+..+.   +..|.+||+.
T Consensus       626 ~~~~g~~latgs-------~dg~I~iwD~~~~~~----~~~~~~~h~~~V~~v~f~-~~~~lvs~s~---D~~ikiWd~~  690 (793)
T PLN00181        626 PSESGRSLAFGS-------ADHKVYYYDLRNPKL----PLCTMIGHSKTVSYVRFV-DSSTLVSSST---DNTLKLWDLS  690 (793)
T ss_pred             eCCCCCEEEEEe-------CCCeEEEEECCCCCc----cceEecCCCCCEEEEEEe-CCCEEEEEEC---CCEEEEEeCC
Confidence             45788888876       578899998864331    334555666677788897 7888888876   7789999987


Q ss_pred             CCc----ccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee------------ecCCC
Q 004971          544 GGE----GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI------------QSGSA  607 (721)
Q Consensus       544 ~g~----~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~------------~~~~~  607 (721)
                      .+.    ...+..+..+...+..+.|+|+|++|+.++.++       .|++|+..........            ...+.
T Consensus       691 ~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~-------~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~  763 (793)
T PLN00181        691 MSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN-------EVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDAS  763 (793)
T ss_pred             CCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC-------EEEEEECCCCCceEEEecccCCcccccccCCCC
Confidence            431    112455655555567889999999999998775       8999997654322110            01122


Q ss_pred             CCcCCeEECCCCCEEEEEEecC
Q 004971          608 GRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       608 ~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      ..+..++|+|+|..|+..+.++
T Consensus       764 ~~V~~v~ws~~~~~lva~~~dG  785 (793)
T PLN00181        764 QFISSVCWRGQSSTLVAANSTG  785 (793)
T ss_pred             cEEEEEEEcCCCCeEEEecCCC
Confidence            3467899999999988777655

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.52  E-value=3.2e-13  Score=134.60  Aligned_cols=281  Identities=12%  Similarity=0.105  Sum_probs=195.4

Q ss_pred             eEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeC
Q 004971          312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRG  391 (721)
Q Consensus       312 ~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~  391 (721)
                      .....+|.-.+..+.|.| ---+|+..    ++-+..|+||++-.. -..+..+.+|...+..+.|+.+|..+..++.+.
T Consensus       207 ~~~~~gH~kgvsai~~fp-~~~hLlLS----~gmD~~vklW~vy~~-~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~  280 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFP-KKGHLLLS----GGMDGLVKLWNVYDD-RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR  280 (503)
T ss_pred             eeeccCCccccchhhhcc-ceeeEEEe----cCCCceEEEEEEecC-cceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence            444566766778889998 65566553    234566999998762 236677788888899999999999999988877


Q ss_pred             CCCCCCCcceeEEEeccCCCCccee-cccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe---ecCceeeEEc
Q 004971          392 GSTREDGNNQLLLENIKSPLPDISL-FRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY---FKNAFSTVWD  465 (721)
Q Consensus       392 ~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~---~~~~~~~~~s  465 (721)
                      .         +-++|..++...... .......+.+.||+..+.++  .++.|..||+.+++..+-.   -+.+..+.|-
T Consensus       281 ~---------lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~  351 (503)
T KOG0282|consen  281 F---------LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFV  351 (503)
T ss_pred             e---------eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEc
Confidence            6         344555555221111 12233456889999777666  4889999999998854333   4677889999


Q ss_pred             CCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCC
Q 004971          466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG  544 (721)
Q Consensus       466 pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~  544 (721)
                      ++|++++.++       +++.+.||.....-     ..+.+.... .....+..+|.+++++..+.   ++.|+++.+..
T Consensus       352 ~~g~rFissS-------Ddks~riWe~~~~v-----~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~---dN~i~ifs~~~  416 (503)
T KOG0282|consen  352 DEGRRFISSS-------DDKSVRIWENRIPV-----PIKNIADPEMHTMPCLTLHPNGKWFAAQSM---DNYIAIFSTVP  416 (503)
T ss_pred             cCCceEeeec-------cCccEEEEEcCCCc-----cchhhcchhhccCcceecCCCCCeehhhcc---CceEEEEeccc
Confidence            9999999987       57899999987643     222222222 34556789999999998887   78888887543


Q ss_pred             CcccceEECcCC---CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCE
Q 004971          545 GEGYGLHRLTEG---PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS  621 (721)
Q Consensus       545 g~~~~~~~l~~~---~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~  621 (721)
                      .-....+....+   .+....+.|||||++|+.+..++       .+++||..+-+....... +......+.|.|-...
T Consensus       417 ~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG-------~v~~wdwkt~kl~~~lka-h~~~ci~v~wHP~e~S  488 (503)
T KOG0282|consen  417 PFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDG-------KVNFWDWKTTKLVSKLKA-HDQPCIGVDWHPVEPS  488 (503)
T ss_pred             ccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCc-------cEEEeechhhhhhhcccc-CCcceEEEEecCCCcc
Confidence            211001112222   23346789999999999988886       899999988665555443 6677788999998766


Q ss_pred             EEEEEecCC
Q 004971          622 IVFTSDYGG  630 (721)
Q Consensus       622 l~~~~~~~~  630 (721)
                      .+.+..-.+
T Consensus       489 kvat~~w~G  497 (503)
T KOG0282|consen  489 KVATCGWDG  497 (503)
T ss_pred             eeEecccCc
Confidence            555554443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=1.9e-12  Score=128.29  Aligned_cols=275  Identities=14%  Similarity=0.080  Sum_probs=181.7

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      ...|+|...++.  ....++..+||.++.....       .++-+.-..+.+....|+| +|...++.+.+    ...++
T Consensus       218 sv~FHp~~plll--vaG~d~~lrifqvDGk~N~-------~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~r----rky~y  283 (514)
T KOG2055|consen  218 SVQFHPTAPLLL--VAGLDGTLRIFQVDGKVNP-------KLQSIHLEKFPIQKAEFAP-NGHSVIFTSGR----RKYLY  283 (514)
T ss_pred             EEEecCCCceEE--EecCCCcEEEEEecCccCh-------hheeeeeccCccceeeecC-CCceEEEeccc----ceEEE
Confidence            347888877766  3555899999976544322       2232323355667889999 99955554433    24489


Q ss_pred             EEECCCCceEEeecccCCC-CcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec--ccCCCCceeC
Q 004971          351 LFDLVKNKFIELTRFVSPK-THHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF--RFDGSFPSFS  427 (721)
Q Consensus       351 l~dl~tg~~~~l~~~~~~~-~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~S  427 (721)
                      .||+.+.+..++....+.. .....+.+|||++.|++....+-         |++....++. .++..  ......+.|+
T Consensus       284 syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~---------I~lLhakT~e-li~s~KieG~v~~~~fs  353 (514)
T KOG2055|consen  284 SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH---------IHLLHAKTKE-LITSFKIEGVVSDFTFS  353 (514)
T ss_pred             EeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCce---------EEeehhhhhh-hhheeeeccEEeeEEEe
Confidence            9999999888776654433 23567899999999988654443         4444433331 11222  2234567999


Q ss_pred             cCCCEEEEE-eCCcEEEEECCCCceEEEe--ecC--ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC-CCcc
Q 004971          428 PKGDRIAFV-EFPGVYVVNSDGSNRRQVY--FKN--AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV-DGVS  501 (721)
Q Consensus       428 pDG~~la~~-~~~~l~v~d~~~g~~~~l~--~~~--~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~  501 (721)
                      .||+.|+.. +.++||+||+.........  .+.  -..++.|++|++||..+       +.+-+.||+.+.--. ..+.
T Consensus       354 Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS-------~~GiVNIYd~~s~~~s~~Pk  426 (514)
T KOG2055|consen  354 SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS-------DSGIVNIYDGNSCFASTNPK  426 (514)
T ss_pred             cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc-------CcceEEEeccchhhccCCCC
Confidence            999888777 5889999999887655544  333  35788999999999987       568889998654211 1112


Q ss_pred             ceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC---CcCceeeEEccCCCEEEEEEcc
Q 004971          502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG---PWSDTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       502 ~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~---~~~~~~~~~SpDG~~l~~~~~~  578 (721)
                      .+..+..-...+..+.|+||++.|+..+.. ....|.++.+.+-..  ....+..   -+.+..++|||.|.+|+++...
T Consensus       427 Pik~~dNLtt~Itsl~Fn~d~qiLAiaS~~-~knalrLVHvPS~TV--FsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~  503 (514)
T KOG2055|consen  427 PIKTVDNLTTAITSLQFNHDAQILAIASRV-KKNALRLVHVPSCTV--FSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA  503 (514)
T ss_pred             chhhhhhhheeeeeeeeCcchhhhhhhhhc-cccceEEEeccceee--eccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence            223333333567889999999999888753 245788887765331  2222221   2346789999999999999877


Q ss_pred             C
Q 004971          579 D  579 (721)
Q Consensus       579 ~  579 (721)
                      +
T Consensus       504 g  504 (514)
T KOG2055|consen  504 G  504 (514)
T ss_pred             C
Confidence            4

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.50  E-value=4.4e-10  Score=118.12  Aligned_cols=215  Identities=15%  Similarity=0.106  Sum_probs=158.1

Q ss_pred             ceeCcCCCEEEEE-eCCcEEEEECCCCceE-EEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971          424 PSFSPKGDRIAFV-EFPGVYVVNSDGSNRR-QVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG  499 (721)
Q Consensus       424 ~~~SpDG~~la~~-~~~~l~v~d~~~g~~~-~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~  499 (721)
                      ..|-|.+++++.. ..+.|.++|+.+.... .+.  .+.+..++.+||++.++.++       .+..+.+|+...-.. .
T Consensus       418 ~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~s-------aDktVkfWdf~l~~~-~  489 (888)
T KOG0306|consen  418 SKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGS-------ADKTVKFWDFKLVVS-V  489 (888)
T ss_pred             EEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEec-------CCcEEEEEeEEEEec-c
Confidence            3567877777776 4778999999877643 232  67888999999999999886       688999998875432 1


Q ss_pred             cc-ceEEccc-------CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCE
Q 004971          500 VS-AVRRLTT-------NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW  571 (721)
Q Consensus       500 ~~-~~~~l~~-------~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~  571 (721)
                      ++ +.+.|.-       -...+..+.+||||++|++.--   +..+.+|-+++-+.  ...|..+.-.+..+..|||++.
T Consensus       490 ~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLL---dnTVkVyflDtlKF--flsLYGHkLPV~smDIS~DSkl  564 (888)
T KOG0306|consen  490 PGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLL---DNTVKVYFLDTLKF--FLSLYGHKLPVLSMDISPDSKL  564 (888)
T ss_pred             CcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEec---cCeEEEEEecceee--eeeecccccceeEEeccCCcCe
Confidence            11 2121221       1235677899999999998876   56666666666543  4567778888889999999999


Q ss_pred             EEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEE
Q 004971          572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI  651 (721)
Q Consensus       572 l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  651 (721)
                      |+.++.+.       .|.+|-++=|.+.+-... |...+..+.|-|+ .++.|+....+                .+..|
T Consensus       565 ivTgSADK-------nVKiWGLdFGDCHKS~fA-HdDSvm~V~F~P~-~~~FFt~gKD~----------------kvKqW  619 (888)
T KOG0306|consen  565 IVTGSADK-------NVKIWGLDFGDCHKSFFA-HDDSVMSVQFLPK-THLFFTCGKDG----------------KVKQW  619 (888)
T ss_pred             EEeccCCC-------ceEEeccccchhhhhhhc-ccCceeEEEEccc-ceeEEEecCcc----------------eEEee
Confidence            99999885       899999888887776543 7788899999995 55667766654                38888


Q ss_pred             EcCCC-CeEEeccCCCCCCCceecCC
Q 004971          652 KLDGS-DLKRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       652 d~~~~-~~~~lt~~~~~~~~~~~sp~  676 (721)
                      |.+.= ..+.|..|...++..+.+|.
T Consensus       620 Dg~kFe~iq~L~~H~~ev~cLav~~~  645 (888)
T KOG0306|consen  620 DGEKFEEIQKLDGHHSEVWCLAVSPN  645 (888)
T ss_pred             chhhhhhheeeccchheeeeeEEcCC
Confidence            86553 45677777777788888885

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=2.9e-11  Score=122.56  Aligned_cols=338  Identities=14%  Similarity=0.147  Sum_probs=205.1

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecC------CC
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRP------TS  344 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~------g~  344 (721)
                      ...|||-|..+++   -+...+.+|-    + .    .+++.+++...  .+..+.||| ..++|+.-+...      ..
T Consensus       215 yv~wSP~GTYL~t---~Hk~GI~lWG----G-~----~f~r~~RF~Hp--~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~  279 (698)
T KOG2314|consen  215 YVRWSPKGTYLVT---FHKQGIALWG----G-E----SFDRIQRFYHP--GVQFIDFSP-NEKYLVTYSPEPIIVEEDDN  279 (698)
T ss_pred             eEEecCCceEEEE---Eeccceeeec----C-c----cHHHHHhccCC--CceeeecCC-ccceEEEecCCccccCcccC
Confidence            4589999997663   2345677881    1 1    12344444333  356788999 999998755322      12


Q ss_pred             CeeeEEEEECCCCceEEeecc-cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC----CCcceeccc
Q 004971          345 SYRHIELFDLVKNKFIELTRF-VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP----LPDISLFRF  419 (721)
Q Consensus       345 ~~~~l~l~dl~tg~~~~l~~~-~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~  419 (721)
                      +...|.+||+.+|....-... ......-.-+.||.|+++++-...+.          |.+.....-    .+.+.  ..
T Consensus       280 e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s----------isIyEtpsf~lld~Kslk--i~  347 (698)
T KOG2314|consen  280 EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS----------ISIYETPSFMLLDKKSLK--IS  347 (698)
T ss_pred             CCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccce----------EEEEecCceeeecccccC--Cc
Confidence            446799999999975432211 11112223468999999988654421          222221110    00111  12


Q ss_pred             CCCCceeCcCCCEEEEEe------CCcEEEEECCCCceEE---EeecCceeeEEcCCCCeEEEEecCCCC---CCCCCcE
Q 004971          420 DGSFPSFSPKGDRIAFVE------FPGVYVVNSDGSNRRQ---VYFKNAFSTVWDPVREAVVYTSGGPEF---ASESSEV  487 (721)
Q Consensus       420 ~~~~~~~SpDG~~la~~~------~~~l~v~d~~~g~~~~---l~~~~~~~~~~spdg~~la~~~~~~~~---~~~~~~~  487 (721)
                      ....+.|||-+..|||..      ...+-++.+.++...+   |..-..-.+.|-..|.+|++-.++..-   ...-.+.
T Consensus       348 gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~  427 (698)
T KOG2314|consen  348 GIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNL  427 (698)
T ss_pred             cccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeE
Confidence            345689999999999982      3457777776655322   223333468899999999987653211   1123467


Q ss_pred             EEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCce--eEEEEECCCCcccceEECcCCCcCceeeEE
Q 004971          488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK--NLYIMDAEGGEGYGLHRLTEGPWSDTMCNW  565 (721)
Q Consensus       488 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~--~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~  565 (721)
                      .|+++....-    .+..+... ..+..++|-|.|.++++.+......  +.|-+....++...+..+..  ...+.+.|
T Consensus       428 eIfrireKdI----pve~velk-e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfw  500 (698)
T KOG2314|consen  428 EIFRIREKDI----PVEVVELK-ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFW  500 (698)
T ss_pred             EEEEeeccCC----Cceeeecc-hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEE
Confidence            7888876542    33333333 3677899999999999988655444  44544444444444455544  23478999


Q ss_pred             ccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCC
Q 004971          566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY  645 (721)
Q Consensus       566 SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~  645 (721)
                      ||.|++++.+....    .+..++.+|++-......-.. .......+.|.|.|+|++..+.-.....+           
T Consensus       501 sPkG~fvvva~l~s----~~g~l~F~D~~~a~~k~~~~~-eh~~at~veWDPtGRYvvT~ss~wrhk~d-----------  564 (698)
T KOG2314|consen  501 SPKGRFVVVAALVS----RRGDLEFYDTDYADLKDTASP-EHFAATEVEWDPTGRYVVTSSSSWRHKVD-----------  564 (698)
T ss_pred             cCCCcEEEEEEecc----cccceEEEecchhhhhhccCc-cccccccceECCCCCEEEEeeehhhhccc-----------
Confidence            99999999988763    456899999875333332221 23456778999999999887764432222           


Q ss_pred             ccEEEEEcCCCCe
Q 004971          646 GEIFKIKLDGSDL  658 (721)
Q Consensus       646 ~~l~~~d~~~~~~  658 (721)
                      ...++++.+|..+
T Consensus       565 ~GYri~tfqGrll  577 (698)
T KOG2314|consen  565 NGYRIFTFQGRLL  577 (698)
T ss_pred             cceEEEEeecHHH
Confidence            1255667776543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=4.6e-11  Score=110.90  Aligned_cols=275  Identities=12%  Similarity=0.134  Sum_probs=176.1

Q ss_pred             EEeCCCCCcccCceeecCC-CCEEEEEEecCCCCeeeEEEEECCCCce---EEeecccCCCCcccCcEEcCCCCEEEEEE
Q 004971          313 QRVTPPGLHAFTPATSPGN-NKFIAVATRRPTSSYRHIELFDLVKNKF---IELTRFVSPKTHHLNPFISPDSSRVGYHK  388 (721)
Q Consensus       313 ~~~~~~~~~~~~~~~sp~d-G~~la~~~~~~g~~~~~l~l~dl~tg~~---~~l~~~~~~~~~~~~~~~Spdg~~l~~~~  388 (721)
                      +.+..+...+..++|+| - |..||.     ++.+..|++|+..++..   +.+.. ..|...++.++|||.|++|+.++
T Consensus         8 ~~~~gh~~r~W~~awhp-~~g~ilAs-----cg~Dk~vriw~~~~~~s~~ck~vld-~~hkrsVRsvAwsp~g~~La~aS   80 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHP-GKGVILAS-----CGTDKAVRIWSTSSGDSWTCKTVLD-DGHKRSVRSVAWSPHGRYLASAS   80 (312)
T ss_pred             EeecCCCCcEEEEEecc-CCceEEEe-----ecCCceEEEEecCCCCcEEEEEecc-ccchheeeeeeecCCCcEEEEee
Confidence            34444544677899999 6 764444     34567799999885432   22221 24667789999999999999988


Q ss_pred             eeCCCCCCCCcceeEEEeccCCCC---cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEE----e--ecC
Q 004971          389 CRGGSTREDGNNQLLLENIKSPLP---DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQV----Y--FKN  458 (721)
Q Consensus       389 ~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l----~--~~~  458 (721)
                      .+..       ..||-.. .+.-+   .+......+..++||++|.+||..+ +..+|+|.++.+..-..    .  ...
T Consensus        81 FD~t-------~~Iw~k~-~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD  152 (312)
T KOG0645|consen   81 FDAT-------VVIWKKE-DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD  152 (312)
T ss_pred             ccce-------EEEeecC-CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence            8776       2222211 11100   1111122345689999999999995 78899999986553322    2  456


Q ss_pred             ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEE
Q 004971          459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY  538 (721)
Q Consensus       459 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~  538 (721)
                      +..+.|.|....|+..+       -++.+++|+-..+.  .......|..+...+...+|.|.|.+|+..++   +..+.
T Consensus       153 VK~V~WHPt~dlL~S~S-------YDnTIk~~~~~~dd--dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd---D~tv~  220 (312)
T KOG0645|consen  153 VKHVIWHPTEDLLFSCS-------YDNTIKVYRDEDDD--DWECVQTLDGHENTVWSLAFDNIGSRLVSCSD---DGTVS  220 (312)
T ss_pred             ccEEEEcCCcceeEEec-------cCCeEEEEeecCCC--CeeEEEEecCccceEEEEEecCCCceEEEecC---CcceE
Confidence            78899999988888876       47899999877432  23456777777778889999999999998887   66677


Q ss_pred             EEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC----ceEEee--ecCCCCCcC
Q 004971          539 IMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT----GLRKLI--QSGSAGRAN  611 (721)
Q Consensus       539 ~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~----~~~~l~--~~~~~~~~~  611 (721)
                      +|-..+.       ++ .+...+..++|. +| .|+....+.       .|.++....+    ....+.  ...|...++
T Consensus       221 Iw~~~~~-------~~~~~sr~~Y~v~W~-~~-~IaS~ggD~-------~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVN  284 (312)
T KOG0645|consen  221 IWRLYTD-------LSGMHSRALYDVPWD-NG-VIASGGGDD-------AIRLFKESDSPDEPSWNLLAKKEGAHEVDVN  284 (312)
T ss_pred             eeeeccC-------cchhcccceEeeeec-cc-ceEeccCCC-------EEEEEEecCCCCCchHHHHHhhhcccccccc
Confidence            7654322       22 123344668887 44 466666553       4444433221    111111  112666889


Q ss_pred             CeEECCCCCEEEEEEecCC
Q 004971          612 HPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       612 ~~~~SpDG~~l~~~~~~~~  630 (721)
                      +++|.|.++-++++..+++
T Consensus       285 sV~w~p~~~~~L~s~~DDG  303 (312)
T KOG0645|consen  285 SVQWNPKVSNRLASGGDDG  303 (312)
T ss_pred             eEEEcCCCCCceeecCCCc
Confidence            9999997555555555444

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.48  E-value=1.3e-11  Score=116.06  Aligned_cols=273  Identities=13%  Similarity=0.061  Sum_probs=188.4

Q ss_pred             eeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEE
Q 004971          273 CWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELF  352 (721)
Q Consensus       273 ~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~  352 (721)
                      .|+|||..+++  ...|..+-+|++.....        ....+..+...+..+.|.+ |+..|+...     .+.+++.|
T Consensus        54 ~F~P~gs~~aS--gG~Dr~I~LWnv~gdce--------N~~~lkgHsgAVM~l~~~~-d~s~i~S~g-----tDk~v~~w  117 (338)
T KOG0265|consen   54 KFHPDGSCFAS--GGSDRAIVLWNVYGDCE--------NFWVLKGHSGAVMELHGMR-DGSHILSCG-----TDKTVRGW  117 (338)
T ss_pred             EECCCCCeEee--cCCcceEEEEecccccc--------ceeeeccccceeEeeeecc-CCCEEEEec-----CCceEEEE
Confidence            78999888773  44477888897665442        3444557777788999999 999887743     56679999


Q ss_pred             ECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceecccCCCCceeCcCCC
Q 004971          353 DLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRFDGSFPSFSPKGD  431 (721)
Q Consensus       353 dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~  431 (721)
                      |.++|+  .+.+...+..-+..+.-+.-|..++....+.+        .+.++|.+.... ...........+.|..++.
T Consensus       118 D~~tG~--~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~--------t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~  187 (338)
T KOG0265|consen  118 DAETGK--RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDG--------TLKLWDIRKKEAIKTFENKYQLTAVGFKDTSD  187 (338)
T ss_pred             ecccce--eeehhccccceeeecCccccCCeEEEecCCCc--------eEEEEeecccchhhccccceeEEEEEeccccc
Confidence            999998  44444445544444444445666665444433        345555543211 1111123344578888888


Q ss_pred             EEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc
Q 004971          432 RIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT  507 (721)
Q Consensus       432 ~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~  507 (721)
                      .+.... ++.|.+||+..+....+.   ...+..+..||+|.++..-+       .+..+.+|++..-... ...+....
T Consensus       188 qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns-------Md~tvrvwd~rp~~p~-~R~v~if~  259 (338)
T KOG0265|consen  188 QVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS-------MDNTVRVWDVRPFAPS-QRCVKIFQ  259 (338)
T ss_pred             ceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc-------ccceEEEEEecccCCC-CceEEEee
Confidence            877775 789999999777655555   45788999999999987654       4788999988654320 01122222


Q ss_pred             cCC----CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCC
Q 004971          508 TNG----KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS  583 (721)
Q Consensus       508 ~~~----~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~  583 (721)
                      .+.    ......+|||+++++-+.+.   +..+|+||..+...  +-.++.+.+.+..+.|.|....|..++.+.    
T Consensus       260 g~~hnfeknlL~cswsp~~~~i~ags~---dr~vyvwd~~~r~~--lyklpGh~gsvn~~~Fhp~e~iils~~sdk----  330 (338)
T KOG0265|consen  260 GHIHNFEKNLLKCSWSPNGTKITAGSA---DRFVYVWDTTSRRI--LYKLPGHYGSVNEVDFHPTEPIILSCSSDK----  330 (338)
T ss_pred             cchhhhhhhcceeeccCCCCccccccc---cceEEEeecccccE--EEEcCCcceeEEEeeecCCCcEEEEeccCc----
Confidence            221    23455799999999999887   78999999987554  677888888899999999999988888775    


Q ss_pred             CceeEEEE
Q 004971          584 GSFEMYLI  591 (721)
Q Consensus       584 ~~~~i~~~  591 (721)
                         .||+=
T Consensus       331 ---~i~lg  335 (338)
T KOG0265|consen  331 ---TIYLG  335 (338)
T ss_pred             ---eeEee
Confidence               78864

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.48  E-value=4e-10  Score=119.87  Aligned_cols=101  Identities=14%  Similarity=0.081  Sum_probs=78.2

Q ss_pred             eEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971          516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       516 ~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      +..+.....++...+   +..|.++|..+.+.  ++.+-.+...++++.|||||+||+.++.+.       .|+.||+-+
T Consensus       540 iv~hr~s~l~a~~~d---df~I~vvD~~t~kv--vR~f~gh~nritd~~FS~DgrWlisasmD~-------tIr~wDlpt  607 (910)
T KOG1539|consen  540 IVYHRVSDLLAIALD---DFSIRVVDVVTRKV--VREFWGHGNRITDMTFSPDGRWLISASMDS-------TIRTWDLPT  607 (910)
T ss_pred             eeeeehhhhhhhhcC---ceeEEEEEchhhhh--hHHhhccccceeeeEeCCCCcEEEEeecCC-------cEEEEeccC
Confidence            344444444554444   77899999988764  566666777889999999999999999986       899999999


Q ss_pred             CceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          596 TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       596 ~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      +...-...  .+....++.|||+|.+|+.+..+..
T Consensus       608 ~~lID~~~--vd~~~~sls~SPngD~LAT~Hvd~~  640 (910)
T KOG1539|consen  608 GTLIDGLL--VDSPCTSLSFSPNGDFLATVHVDQN  640 (910)
T ss_pred             cceeeeEe--cCCcceeeEECCCCCEEEEEEecCc
Confidence            87765543  3455678999999999999888753

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.48  E-value=5.6e-11  Score=119.18  Aligned_cols=348  Identities=12%  Similarity=0.118  Sum_probs=198.9

Q ss_pred             CCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEE--eccC--C---cceeccCCeEEEEeccCC
Q 004971          216 VADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKI--VENG--G---WPCWVDESTLFFHRKSEE  288 (721)
Q Consensus       216 ~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~--~~~~--~---~~~ws~dg~l~~~~~~~~  288 (721)
                      .......|.|-+.-|...- .           ...+|.|+++++...+-.  .+..  .   ..+|.+||.++-   .+.
T Consensus       201 e~v~~a~FHPtd~nliit~-G-----------k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT---gDS  265 (626)
T KOG2106|consen  201 EVVFLATFHPTDPNLIITC-G-----------KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT---GDS  265 (626)
T ss_pred             ceEEEEEeccCCCcEEEEe-C-----------CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe---ecC
Confidence            3345558999554444422 1           368999999888744432  2221  1   348999988766   445


Q ss_pred             CCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEE--eeccc
Q 004971          289 DDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIE--LTRFV  366 (721)
Q Consensus       289 ~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~--l~~~~  366 (721)
                      +|.+.||......         -.+++..+...+..+.... +|..| .     |+.++.|.+||-.-.+.++  +....
T Consensus       266 ~G~i~Iw~~~~~~---------~~k~~~aH~ggv~~L~~lr-~Gtll-S-----GgKDRki~~Wd~~y~k~r~~elPe~~  329 (626)
T KOG2106|consen  266 GGNILIWSKGTNR---------ISKQVHAHDGGVFSLCMLR-DGTLL-S-----GGKDRKIILWDDNYRKLRETELPEQF  329 (626)
T ss_pred             CceEEEEeCCCce---------EEeEeeecCCceEEEEEec-CccEe-e-----cCccceEEeccccccccccccCchhc
Confidence            7888899542222         2233335555677777777 88643 2     4566778888832222211  11100


Q ss_pred             ------------------------------------CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC
Q 004971          367 ------------------------------------SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP  410 (721)
Q Consensus       367 ------------------------------------~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  410 (721)
                                                          .+....+.++..|+...++.+..++.         +.+++ +..
T Consensus       330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~---------v~lW~-~~k  399 (626)
T KOG2106|consen  330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKH---------VRLWN-DHK  399 (626)
T ss_pred             CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcce---------EEEcc-CCc
Confidence                                                00111111122222222222111111         11111 000


Q ss_pred             CCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcE
Q 004971          411 LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEV  487 (721)
Q Consensus       411 ~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  487 (721)
                      ..-............|+|.| .||... .+...++|.++.....+.  ...+..+.|+|||.+||+.+       .++.+
T Consensus       400 ~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs-------~d~~i  471 (626)
T KOG2106|consen  400 LEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS-------HDNHI  471 (626)
T ss_pred             eeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec-------CCCeE
Confidence            00001112223456889999 777764 677888999887665555  55677899999999999997       68899


Q ss_pred             EEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-----------
Q 004971          488 DIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-----------  555 (721)
Q Consensus       488 ~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-----------  555 (721)
                      .||+++.++.    ...++.... ..+.++.||+|+++|...+.   +.+|..|...  +.++...+..           
T Consensus       472 yiy~Vs~~g~----~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~---d~eiLyW~~~--~~~~~ts~kDvkW~t~~c~lG  542 (626)
T KOG2106|consen  472 YIYRVSANGR----KYSRVGKCSGSPITHLDWSSDSQFLVSNSG---DYEILYWKPS--ECKQITSVKDVKWATYTCTLG  542 (626)
T ss_pred             EEEEECCCCc----EEEEeeeecCceeEEeeecCCCceEEeccC---ceEEEEEccc--cCcccceecceeeeeeEEEEE
Confidence            9999998875    555554433 56778999999999987775   7888888433  2111111100           


Q ss_pred             -------CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971          556 -------GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS  626 (721)
Q Consensus       556 -------~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~  626 (721)
                             ....+...+-|.+.+.|+.+...     +.-+||.|....-+..-..-.++...+.+++|+-+-..+..+.
T Consensus       543 F~v~g~s~~t~i~a~~rs~~~~~lA~gdd~-----g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg  615 (626)
T KOG2106|consen  543 FEVFGGSDGTDINAVARSHCEKLLASGDDF-----GKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTG  615 (626)
T ss_pred             EEEecccCCchHHHhhhhhhhhhhhccccC-----ceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecC
Confidence                   01122334455566655544443     6678888887654332222224677788899998877777666

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=3.4e-10  Score=117.82  Aligned_cols=426  Identities=15%  Similarity=0.131  Sum_probs=226.2

Q ss_pred             cCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeec-CCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEE
Q 004971          175 SGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLT-PYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYI  253 (721)
Q Consensus       175 dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~  253 (721)
                      +.+.|+.....+        ...+|.+...=-....++ +........+|++.| +|..+.            ..+.|-.
T Consensus        36 kS~~lAvsRt~g--------~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g------------~sg~i~E   94 (691)
T KOG2048|consen   36 KSNQLAVSRTDG--------NIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSG------------LSGSITE   94 (691)
T ss_pred             cCCceeeeccCC--------cEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeec------------CCceEEE
Confidence            556566654443        257777654322223332 223344556898544 555543            1367999


Q ss_pred             EEcCCCceeEEEeccCCcceec----cCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCC-CCCcccCceee
Q 004971          254 FLTRDGTQRVKIVENGGWPCWV----DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP-PGLHAFTPATS  328 (721)
Q Consensus       254 ~d~~~g~~~~l~~~~~~~~~ws----~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s  328 (721)
                      ||+.+++.+.-....+ .+-|+    |.+..+.  ...++|....+ ...++.-       ....... ....+..+.|+
T Consensus        95 wDl~~lk~~~~~d~~g-g~IWsiai~p~~~~l~--IgcddGvl~~~-s~~p~~I-------~~~r~l~rq~sRvLslsw~  163 (691)
T KOG2048|consen   95 WDLHTLKQKYNIDSNG-GAIWSIAINPENTILA--IGCDDGVLYDF-SIGPDKI-------TYKRSLMRQKSRVLSLSWN  163 (691)
T ss_pred             EecccCceeEEecCCC-cceeEEEeCCccceEE--eecCCceEEEE-ecCCceE-------EEEeecccccceEEEEEec
Confidence            9998888665543333 33344    5555544  23336633232 2222211       1111111 23456788999


Q ss_pred             cCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCC--CCcccCcEEc----CCCCEEEEEEeeCCCCCCCCccee
Q 004971          329 PGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSP--KTHHLNPFIS----PDSSRVGYHKCRGGSTREDGNNQL  402 (721)
Q Consensus       329 p~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~--~~~~~~~~~S----pdg~~l~~~~~~~~~~~~~~~~~l  402 (721)
                      | +|.+|+.     |..++.|.+||..++....+......  ......+.||    .|+ .|+.....         ..+
T Consensus       164 ~-~~~~i~~-----Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~---------G~V  227 (691)
T KOG2048|consen  164 P-TGTKIAG-----GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSA---------GTV  227 (691)
T ss_pred             C-CccEEEe-----cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCC---------ceE
Confidence            9 9998887     45667799999999875442211100  1111223443    333 22221111         224


Q ss_pred             EEEeccCC--CCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe-------ecCceeeEEcCC-----
Q 004971          403 LLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY-------FKNAFSTVWDPV-----  467 (721)
Q Consensus       403 ~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~-------~~~~~~~~~spd-----  467 (721)
                      .+++...+  .+.......++..++.++++.++...+ ++.+..+...++....+.       ...+..++..++     
T Consensus       228 ~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sg  307 (691)
T KOG2048|consen  228 TFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISG  307 (691)
T ss_pred             EEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEec
Confidence            44443332  222233344555678888888877774 677777777665331111       222233333222     


Q ss_pred             CC--eEEEEecCC----------CC----------------CCCCCcEEEEEEEccCCC---CccceEEccc-CCCCCcc
Q 004971          468 RE--AVVYTSGGP----------EF----------------ASESSEVDIISINVDDVD---GVSAVRRLTT-NGKNNAF  515 (721)
Q Consensus       468 g~--~la~~~~~~----------~~----------------~~~~~~~~i~~~~~~~~~---~~~~~~~l~~-~~~~~~~  515 (721)
                      |+  .|++...+.          .+                ......+.+|++......   ....+-.+.. .......
T Consensus       308 G~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~  387 (691)
T KOG2048|consen  308 GRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISC  387 (691)
T ss_pred             ceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceee
Confidence            11  111111100          00                001122334444322100   0111222222 2345667


Q ss_pred             eEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc---CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEe
Q 004971          516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT---EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH  592 (721)
Q Consensus       516 ~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~---~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d  592 (721)
                      .+.||||++|++..-.  ...||.+..+. .. .++.+.   ........+.|+-|+..+++.+.+.      ..+...+
T Consensus       388 ~aiSPdg~~Ia~st~~--~~~iy~L~~~~-~v-k~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~------~~le~~e  457 (691)
T KOG2048|consen  388 AAISPDGNLIAISTVS--RTKIYRLQPDP-NV-KVINVDDVPLALLDASAISFTIDKNKLFLVSKNI------FSLEEFE  457 (691)
T ss_pred             eccCCCCCEEEEeecc--ceEEEEeccCc-ce-eEEEeccchhhhccceeeEEEecCceEEEEeccc------ceeEEEE
Confidence            7999999999998742  44677766654 21 122222   2223456789999999988888432      3777777


Q ss_pred             cCCCceEEeee---cCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEec-cCCCCC
Q 004971          593 PNGTGLRKLIQ---SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT-QNSFED  668 (721)
Q Consensus       593 ~~~~~~~~l~~---~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt-~~~~~~  668 (721)
                      +.+...+.+..   ......++.++-||||.||+..+..+                 .|++|++.+++.+.|. .....+
T Consensus       458 l~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g-----------------~I~v~nl~~~~~~~l~~rln~~v  520 (691)
T KOG2048|consen  458 LETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRG-----------------QIFVYNLETLESHLLKVRLNIDV  520 (691)
T ss_pred             ecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccc-----------------eEEEEEcccceeecchhccCcce
Confidence            77664433321   12345678899999999999988655                 5999999999888776 344556


Q ss_pred             CCceecC
Q 004971          669 GTPAWGP  675 (721)
Q Consensus       669 ~~~~~sp  675 (721)
                      ++..|+|
T Consensus       521 Ta~~~~~  527 (691)
T KOG2048|consen  521 TAAAFSP  527 (691)
T ss_pred             eeeeccc
Confidence            7778886

>PTZ00421 coronin; Provisional

Probab=99.46  E-value=5.3e-11  Score=128.36  Aligned_cols=220  Identities=14%  Similarity=0.110  Sum_probs=150.9

Q ss_pred             CCCCceeCc-CCCEEEEEe-CCcEEEEECCCCce--------EEEe--ecCceeeEEcCCCC-eEEEEecCCCCCCCCCc
Q 004971          420 DGSFPSFSP-KGDRIAFVE-FPGVYVVNSDGSNR--------RQVY--FKNAFSTVWDPVRE-AVVYTSGGPEFASESSE  486 (721)
Q Consensus       420 ~~~~~~~Sp-DG~~la~~~-~~~l~v~d~~~g~~--------~~l~--~~~~~~~~~spdg~-~la~~~~~~~~~~~~~~  486 (721)
                      ....++|+| |++.|+..+ ++.|.+||+..+..        ..+.  ...+..+.|+|++. .|+.++       .++.
T Consensus        77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs-------~Dgt  149 (493)
T PTZ00421         77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG-------ADMV  149 (493)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe-------CCCE
Confidence            345679999 888888774 78999999975421        2222  45678899999875 555554       5789


Q ss_pred             EEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcC-ceeeEE
Q 004971          487 VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS-DTMCNW  565 (721)
Q Consensus       487 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~-~~~~~~  565 (721)
                      +.||++....     ....+..+...+..++|+|||+.|+..+.   +..|.+||+.+++.  +..+..+... .....|
T Consensus       150 VrIWDl~tg~-----~~~~l~~h~~~V~sla~spdG~lLatgs~---Dg~IrIwD~rsg~~--v~tl~~H~~~~~~~~~w  219 (493)
T PTZ00421        150 VNVWDVERGK-----AVEVIKCHSDQITSLEWNLDGSLLCTTSK---DKKLNIIDPRDGTI--VSSVEAHASAKSQRCLW  219 (493)
T ss_pred             EEEEECCCCe-----EEEEEcCCCCceEEEEEECCCCEEEEecC---CCEEEEEECCCCcE--EEEEecCCCCcceEEEE
Confidence            9999987542     45566666667888999999999998886   78899999998874  4455444332 346789


Q ss_pred             ccCCCEEEEEEccCCCCCCceeEEEEecCCCc-eEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCC
Q 004971          566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG-LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP  644 (721)
Q Consensus       566 SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~  644 (721)
                      .+++..|+......   .....|.+||+.... +..............+.|++|++.|+..+..++              
T Consensus       220 ~~~~~~ivt~G~s~---s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg--------------  282 (493)
T PTZ00421        220 AKRKDLIITLGCSK---SQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG--------------  282 (493)
T ss_pred             cCCCCeEEEEecCC---CCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC--------------
Confidence            99988887665331   133589999997643 222222112233455789999999888765333              


Q ss_pred             CccEEEEEcCCCCeEEeccCC--CCCCCceecC
Q 004971          645 YGEIFKIKLDGSDLKRLTQNS--FEDGTPAWGP  675 (721)
Q Consensus       645 ~~~l~~~d~~~~~~~~lt~~~--~~~~~~~~sp  675 (721)
                        .|++||+..++........  ......+|.|
T Consensus       283 --~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p  313 (493)
T PTZ00421        283 --NIRCFELMNERLTFCSSYSSVEPHKGLCMMP  313 (493)
T ss_pred             --eEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence              4999999888776554322  2235667777

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.46  E-value=4.6e-13  Score=130.63  Aligned_cols=271  Identities=12%  Similarity=0.067  Sum_probs=192.8

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      .+..+.|.| +|++|+..+     ..+.+.+|+..+-..+.+.  ..|...+....||++|.+++.....+-        
T Consensus        98 ~V~~v~WtP-eGRRLltgs-----~SGEFtLWNg~~fnFEtil--QaHDs~Vr~m~ws~~g~wmiSgD~gG~--------  161 (464)
T KOG0284|consen   98 PVNVVRWTP-EGRRLLTGS-----QSGEFTLWNGTSFNFETIL--QAHDSPVRTMKWSHNGTWMISGDKGGM--------  161 (464)
T ss_pred             ceeeEEEcC-CCceeEeec-----ccccEEEecCceeeHHHHh--hhhcccceeEEEccCCCEEEEcCCCce--------
Confidence            456789999 999999854     3345889987544333333  456777899999999999887544443        


Q ss_pred             eeEEEeccCC-CCcce-ecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCc-eEEEe--ecCceeeEEcCCCCeEEEE
Q 004971          401 QLLLENIKSP-LPDIS-LFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSN-RRQVY--FKNAFSTVWDPVREAVVYT  474 (721)
Q Consensus       401 ~l~~~~~~~~-~~~~~-~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~-~~~l~--~~~~~~~~~spdg~~la~~  474 (721)
                       |-+++..-. .+.+. ......+.++|||+...++.+ .++.|.+||..-.+ .+.|.  .-.+..+.|.|....|+..
T Consensus       162 -iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasg  240 (464)
T KOG0284|consen  162 -IKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASG  240 (464)
T ss_pred             -EEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEc
Confidence             222222111 11111 112346678999987777666 58899999986555 45555  4467899999999888887


Q ss_pred             ecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc
Q 004971          475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT  554 (721)
Q Consensus       475 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~  554 (721)
                      +       .+.-+.+|+-....     ++..+..+...+..+.|+|++.+|+..+.   +..+.++|+.+-+.  +...-
T Consensus       241 s-------kDnlVKlWDprSg~-----cl~tlh~HKntVl~~~f~~n~N~Llt~sk---D~~~kv~DiR~mkE--l~~~r  303 (464)
T KOG0284|consen  241 S-------KDNLVKLWDPRSGS-----CLATLHGHKNTVLAVKFNPNGNWLLTGSK---DQSCKVFDIRTMKE--LFTYR  303 (464)
T ss_pred             c-------CCceeEeecCCCcc-----hhhhhhhccceEEEEEEcCCCCeeEEccC---CceEEEEehhHhHH--HHHhh
Confidence            6       45678888876543     66667777778899999999999999987   78899999985332  55555


Q ss_pred             CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCC
Q 004971          555 EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGI  631 (721)
Q Consensus       555 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~  631 (721)
                      .+...+..+.|+|=-.-|+....-.      ..|+.|.+...++.......|...+.+++|.|=|..|+..+++.+.
T Consensus       304 ~Hkkdv~~~~WhP~~~~lftsgg~D------gsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~  374 (464)
T KOG0284|consen  304 GHKKDVTSLTWHPLNESLFTSGGSD------GSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTV  374 (464)
T ss_pred             cchhhheeeccccccccceeeccCC------CceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcce
Confidence            6667788999999877666655432      2677787775555555555588889999999999999887777653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.46  E-value=4.1e-10  Score=114.52  Aligned_cols=273  Identities=13%  Similarity=0.121  Sum_probs=152.5

Q ss_pred             eeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC--CCCCCCcceeEEEeccCCCC--cceec-----
Q 004971          347 RHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG--STREDGNNQLLLENIKSPLP--DISLF-----  417 (721)
Q Consensus       347 ~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~--~~~~~~~~~l~~~~~~~~~~--~~~~~-----  417 (721)
                      .+|.++|.++++.......   +..... .+||||+.|+.+..--.  ..+... ..+.+.|..+...  .+...     
T Consensus        27 ~~v~ViD~~~~~v~g~i~~---G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~-d~V~v~D~~t~~~~~~i~~p~~p~~  101 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDG---GFLPNP-VVASDGSFFAHASTVYSRIARGKRT-DYVEVIDPQTHLPIADIELPEGPRF  101 (352)
T ss_pred             ceEEEEECCCCEEEEEEEc---cCCCce-eECCCCCEEEEEeccccccccCCCC-CEEEEEECccCcEEeEEccCCCchh
Confidence            5699999999874332211   222223 49999999998765100  000011 3466666655421  11110     


Q ss_pred             --ccCCCCceeCcCCCEEEEEe---CCcEEEEECCCCceE-EEe-ecCce--------eeEEcCCCCeEEEEecCCCCCC
Q 004971          418 --RFDGSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNRR-QVY-FKNAF--------STVWDPVREAVVYTSGGPEFAS  482 (721)
Q Consensus       418 --~~~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~~-~l~-~~~~~--------~~~~spdg~~la~~~~~~~~~~  482 (721)
                        .......++||||++|++..   ...+.++|+.+++.. ++. .+...        .+....||+.+.+..+      
T Consensus       102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d------  175 (352)
T TIGR02658       102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYG------  175 (352)
T ss_pred             hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEec------
Confidence              11122579999999998773   678999999988743 344 22111        2222344444433331      


Q ss_pred             CCCcEEEEEEEccCCCCccceEEcccC--CCCCcceEEcc-CCCEEEEEEeeCCceeEEEEECCCCcccc---eEECcCC
Q 004971          483 ESSEVDIISINVDDVDGVSAVRRLTTN--GKNNAFPSVSP-DGKWIVFRSTRTGYKNLYIMDAEGGEGYG---LHRLTEG  556 (721)
Q Consensus       483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Sp-Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~---~~~l~~~  556 (721)
                      .+++...            ....+...  ......|.|++ ||+++++..    ...|+.+|+.+.+...   ...++..
T Consensus       176 ~~g~~~~------------~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~----eG~V~~id~~~~~~~~~~~~~~~~~~  239 (352)
T TIGR02658       176 TKGNPKI------------KPTEVFHPEDEYLINHPAYSNKSGRLVWPTY----TGKIFQIDLSSGDAKFLPAIEAFTEA  239 (352)
T ss_pred             CCCceEE------------eeeeeecCCccccccCCceEcCCCcEEEEec----CCeEEEEecCCCcceecceeeecccc
Confidence            1122110            01111111  11123346677 887666555    4789999976543211   1112211


Q ss_pred             -------CcCceeeEEccCCCEEEEEEccCCC---CCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971          557 -------PWSDTMCNWSPDGEWIAFASDRDNP---GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS  626 (721)
Q Consensus       557 -------~~~~~~~~~SpDG~~l~~~~~~~~~---~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~  626 (721)
                             +.....++++|||++|++.......   ..+...|+++|+.+++......  .......+++||||+.++|..
T Consensus       240 ~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~--vG~~~~~iavS~Dgkp~lyvt  317 (352)
T TIGR02658       240 EKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE--LGHEIDSINVSQDAKPLLYAL  317 (352)
T ss_pred             ccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe--CCCceeeEEECCCCCeEEEEe
Confidence                   1122348999999999986532110   1233589999999988766554  345778999999999444444


Q ss_pred             ecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EEecc
Q 004971          627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLTQ  663 (721)
Q Consensus       627 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt~  663 (721)
                      +...               +.|.++|..+++. +.+..
T Consensus       318 n~~s---------------~~VsViD~~t~k~i~~i~~  340 (352)
T TIGR02658       318 STGD---------------KTLYIFDAETGKELSSVNQ  340 (352)
T ss_pred             CCCC---------------CcEEEEECcCCeEEeeecc
Confidence            4332               1499999988755 55544

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=7.5e-12  Score=118.41  Aligned_cols=274  Identities=18%  Similarity=0.170  Sum_probs=168.3

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      ..+|+.||+.+.+.  ..|+.+.||.+.+-.-.    .-...++-.+.+ ....+.|+| |-+.+++...+.  +.  |+
T Consensus        91 ~~~FsSdGK~lat~--~~Dr~Ir~w~~~DF~~~----eHr~~R~nve~d-hpT~V~Fap-Dc~s~vv~~~~g--~~--l~  158 (420)
T KOG2096|consen   91 DVAFSSDGKKLATI--SGDRSIRLWDVRDFENK----EHRCIRQNVEYD-HPTRVVFAP-DCKSVVVSVKRG--NK--LC  158 (420)
T ss_pred             eeEEcCCCceeEEE--eCCceEEEEecchhhhh----hhhHhhccccCC-CceEEEECC-CcceEEEEEccC--CE--EE
Confidence            45899999876643  23799999977653211    000111111112 446788999 999888765532  22  66


Q ss_pred             EEECCC---Cce--EEe-----ecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC-Ccceeccc
Q 004971          351 LFDLVK---NKF--IEL-----TRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL-PDISLFRF  419 (721)
Q Consensus       351 l~dl~t---g~~--~~l-----~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~  419 (721)
                      +|-+..   |..  ..+     .....+...+.++.....+++|+.++.+..         +.++++++.. ..+..-..
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~---------i~lw~lkGq~L~~idtnq~  229 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTK---------ICLWDLKGQLLQSIDTNQS  229 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCc---------EEEEecCCceeeeeccccc
Confidence            665432   211  001     011122333444556666777776665554         7777777542 12222222


Q ss_pred             CCCCceeCcCCCEEEEEe-CCcEEEEECC---CCceEE---Ee-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcE
Q 004971          420 DGSFPSFSPKGDRIAFVE-FPGVYVVNSD---GSNRRQ---VY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEV  487 (721)
Q Consensus       420 ~~~~~~~SpDG~~la~~~-~~~l~v~d~~---~g~~~~---l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  487 (721)
                      .....++||||+.|+..+ ..++.+|.+-   .|+.+.   +.     ...+..++|||+.++++.++       .++.+
T Consensus       230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS-------kDG~w  302 (420)
T KOG2096|consen  230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS-------KDGKW  302 (420)
T ss_pred             cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe-------cCCcE
Confidence            345579999999999884 6778888752   333222   22     34678899999999999997       68999


Q ss_pred             EEEEEEccCCC--Cccce----EEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCc
Q 004971          488 DIISINVDDVD--GVSAV----RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSD  560 (721)
Q Consensus       488 ~i~~~~~~~~~--~~~~~----~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~  560 (721)
                      +||+.+..-..  .+..+    ..+...+.....+..||.|+.|+...    ...|.++..++|+.  ...+. .+...+
T Consensus       303 riwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~----gs~l~~~~se~g~~--~~~~e~~h~~~I  376 (420)
T KOG2096|consen  303 RIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF----GSDLKVFASEDGKD--YPELEDIHSTTI  376 (420)
T ss_pred             EEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec----CCceEEEEcccCcc--chhHHHhhcCce
Confidence            99998864320  00011    12222234555789999999999877    46788888887763  22222 234567


Q ss_pred             eeeEEccCCCEEEEEEcc
Q 004971          561 TMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       561 ~~~~~SpDG~~l~~~~~~  578 (721)
                      ..++|++||++++.+.++
T Consensus       377 s~is~~~~g~~~atcGdr  394 (420)
T KOG2096|consen  377 SSISYSSDGKYIATCGDR  394 (420)
T ss_pred             eeEEecCCCcEEeeecce
Confidence            899999999999988876

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=8.4e-12  Score=129.72  Aligned_cols=270  Identities=13%  Similarity=0.070  Sum_probs=191.2

Q ss_pred             CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCC
Q 004971          319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDG  398 (721)
Q Consensus       319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~  398 (721)
                      .++..-+.||. .+ .++.+..      ..+++|+..+++...+....  ...+..+.|+++|+.|+.....+.      
T Consensus       177 DfY~nlldWss-~n-~laValg------~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~------  240 (484)
T KOG0305|consen  177 DFYLNLLDWSS-AN-VLAVALG------QSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDGT------  240 (484)
T ss_pred             cHhhhHhhccc-CC-eEEEEec------ceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCCe------
Confidence            34445667876 54 4555432      23999999999877776543  566888999999999999776665      


Q ss_pred             cceeEEEeccCC--CCccee-cccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceE-E-Ee--ecCceeeEEcCCCCe
Q 004971          399 NNQLLLENIKSP--LPDISL-FRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRR-Q-VY--FKNAFSTVWDPVREA  470 (721)
Q Consensus       399 ~~~l~~~~~~~~--~~~~~~-~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~-~-l~--~~~~~~~~~spdg~~  470 (721)
                         +.+++....  ...+.. .......++|.  +..+... .+..|..+|+...+.. . +.  ...+-.+.|++|+++
T Consensus       241 ---v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~  315 (484)
T KOG0305|consen  241 ---VQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ  315 (484)
T ss_pred             ---EEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe
Confidence               455554433  122222 22233446776  3334333 3677888887655421 1 21  445667999999999


Q ss_pred             EEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce
Q 004971          471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL  550 (721)
Q Consensus       471 la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~  550 (721)
                      +|...       .++.+.||+....     .....+..+...+..++|+|=.+-|+.......+..|..||..+|+.  +
T Consensus       316 lASGg-------nDN~~~Iwd~~~~-----~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~--i  381 (484)
T KOG0305|consen  316 LASGG-------NDNVVFIWDGLSP-----EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR--I  381 (484)
T ss_pred             eccCC-------CccceEeccCCCc-----cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE--e
Confidence            99874       5788999988433     26778888888899999999888787777777788999999999884  4


Q ss_pred             EECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       551 ~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      ..+..+ ..+..+.||+..+.|+.+....     ..+|.+|+..+-+...... +|...+-.+++||||..|+..+.+.+
T Consensus       382 ~~vdtg-sQVcsL~Wsk~~kEi~sthG~s-----~n~i~lw~~ps~~~~~~l~-gH~~RVl~la~SPdg~~i~t~a~DET  454 (484)
T KOG0305|consen  382 DSVDTG-SQVCSLIWSKKYKELLSTHGYS-----ENQITLWKYPSMKLVAELL-GHTSRVLYLALSPDGETIVTGAADET  454 (484)
T ss_pred             cccccC-CceeeEEEcCCCCEEEEecCCC-----CCcEEEEeccccceeeeec-CCcceeEEEEECCCCCEEEEecccCc
Confidence            445444 4568999999999999888753     2367777766654443333 48888999999999999999999886

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.45  E-value=4.7e-12  Score=122.00  Aligned_cols=276  Identities=12%  Similarity=0.076  Sum_probs=190.9

Q ss_pred             eEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeC
Q 004971          312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRG  391 (721)
Q Consensus       312 ~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~  391 (721)
                      ...+.++...+..+.+.| +--.++.++     ++..|++||..+|+.  .....++...+..++|+..|+.|+.++.+-
T Consensus       101 ~~~l~g~r~~vt~v~~hp-~~~~v~~as-----~d~tikv~D~~tg~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl  172 (406)
T KOG0295|consen  101 VQKLAGHRSSVTRVIFHP-SEALVVSAS-----EDATIKVFDTETGEL--ERSLRGHTDSVFDISFDASGKYLATCSSDL  172 (406)
T ss_pred             hhhhhccccceeeeeecc-CceEEEEec-----CCceEEEEEccchhh--hhhhhccccceeEEEEecCccEEEecCCcc
Confidence            344555555666777888 665444432     445699999999985  344456667788999999999998877655


Q ss_pred             CCCCCCCcceeEEEeccCC---CCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEE
Q 004971          392 GSTREDGNNQLLLENIKSP---LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVW  464 (721)
Q Consensus       392 ~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~  464 (721)
                      .         +.++++..-   .+.+.........+.+-|-|.+|+..+ +..|..|++++|-.....   ...+..+..
T Consensus       173 ~---------~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v  243 (406)
T KOG0295|consen  173 S---------AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRV  243 (406)
T ss_pred             c---------hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEe
Confidence            4         223333221   111112223345578889999988885 788999999999865444   557888999


Q ss_pred             cCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC---------------CCEEEEEE
Q 004971          465 DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD---------------GKWIVFRS  529 (721)
Q Consensus       465 spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD---------------g~~l~~~s  529 (721)
                      +.||..++..+       .+..+++|.+....     ....+..++..+.-.+|.|+               |..+...+
T Consensus       244 ~~DGti~As~s-------~dqtl~vW~~~t~~-----~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S  311 (406)
T KOG0295|consen  244 NQDGTIIASCS-------NDQTLRVWVVATKQ-----CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS  311 (406)
T ss_pred             cCCeeEEEecC-------CCceEEEEEeccch-----hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence            99999998876       57889999987652     22333333333333333332               23444444


Q ss_pred             eeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCC
Q 004971          530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR  609 (721)
Q Consensus       530 ~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~  609 (721)
                      .   +..|.+||+.+|..  +-.|..+...+..++|+|-|++|+.+.++.       .|.+||+..+++.+... .+...
T Consensus       312 r---DktIk~wdv~tg~c--L~tL~ghdnwVr~~af~p~Gkyi~ScaDDk-------tlrvwdl~~~~cmk~~~-ah~hf  378 (406)
T KOG0295|consen  312 R---DKTIKIWDVSTGMC--LFTLVGHDNWVRGVAFSPGGKYILSCADDK-------TLRVWDLKNLQCMKTLE-AHEHF  378 (406)
T ss_pred             c---cceEEEEeccCCeE--EEEEecccceeeeeEEcCCCeEEEEEecCC-------cEEEEEeccceeeeccC-CCcce
Confidence            4   77899999999986  777877777789999999999999999886       89999999987766554 36777


Q ss_pred             cCCeEECCCCCEEEEEEecC
Q 004971          610 ANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       610 ~~~~~~SpDG~~l~~~~~~~  629 (721)
                      +..+.|..+--+++..+-+.
T Consensus       379 vt~lDfh~~~p~VvTGsVdq  398 (406)
T KOG0295|consen  379 VTSLDFHKTAPYVVTGSVDQ  398 (406)
T ss_pred             eEEEecCCCCceEEeccccc
Confidence            78888877766666554443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=1.3e-11  Score=128.41  Aligned_cols=247  Identities=15%  Similarity=0.126  Sum_probs=174.1

Q ss_pred             ceEEeCCC-CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC-CCCcccCcEEcCCCCEEEEEE
Q 004971          311 SIQRVTPP-GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS-PKTHHLNPFISPDSSRVGYHK  388 (721)
Q Consensus       311 ~~~~~~~~-~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~-~~~~~~~~~~Spdg~~l~~~~  388 (721)
                      ...++... ...+..+.|++ +|.+|+...     .++.+.+||.++.+  .+..... +...+...+|.  +..+....
T Consensus       208 ~v~~l~~~~~~~vtSv~ws~-~G~~LavG~-----~~g~v~iwD~~~~k--~~~~~~~~h~~rvg~laW~--~~~lssGs  277 (484)
T KOG0305|consen  208 SVTELCSFGEELVTSVKWSP-DGSHLAVGT-----SDGTVQIWDVKEQK--KTRTLRGSHASRVGSLAWN--SSVLSSGS  277 (484)
T ss_pred             ceEEeEecCCCceEEEEECC-CCCEEEEee-----cCCeEEEEehhhcc--ccccccCCcCceeEEEecc--CceEEEec
Confidence            44555444 56778999999 999999954     45569999998765  4444344 67778888998  33333322


Q ss_pred             eeCCCCCCCCcceeEEEeccCCCCc---ceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCce-EEEe--ecCcee
Q 004971          389 CRGGSTREDGNNQLLLENIKSPLPD---ISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNR-RQVY--FKNAFS  461 (721)
Q Consensus       389 ~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~-~~l~--~~~~~~  461 (721)
                      .++         .|...++......   +......+-.+.|++|++++|.. .++.+.+||....++ ..+.  ...+..
T Consensus       278 r~~---------~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA  348 (484)
T KOG0305|consen  278 RDG---------KILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKA  348 (484)
T ss_pred             CCC---------cEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeE
Confidence            222         3455555443221   22334445568999999999998 488999999955543 3333  667889


Q ss_pred             eEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEE
Q 004971          462 TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD  541 (721)
Q Consensus       462 ~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d  541 (721)
                      ++|+|-..-|+.+..|    ..+..+++|......     .+..+.. ...+..+.|++..+.|+...... ..+|.+|+
T Consensus       349 ~awcP~q~~lLAsGGG----s~D~~i~fwn~~~g~-----~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s-~n~i~lw~  417 (484)
T KOG0305|consen  349 LAWCPWQSGLLATGGG----SADRCIKFWNTNTGA-----RIDSVDT-GSQVCSLIWSKKYKELLSTHGYS-ENQITLWK  417 (484)
T ss_pred             eeeCCCccCceEEcCC----CcccEEEEEEcCCCc-----Eeccccc-CCceeeEEEcCCCCEEEEecCCC-CCcEEEEe
Confidence            9999987777666543    367889999887532     3333333 34788899999999998876433 34777887


Q ss_pred             CCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971          542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       542 ~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                      ..+-+.  +..+..+...+..+++||||..|+.++.++       +|..|++-+.
T Consensus       418 ~ps~~~--~~~l~gH~~RVl~la~SPdg~~i~t~a~DE-------Tlrfw~~f~~  463 (484)
T KOG0305|consen  418 YPSMKL--VAELLGHTSRVLYLALSPDGETIVTGAADE-------TLRFWNLFDE  463 (484)
T ss_pred             ccccce--eeeecCCcceeEEEEECCCCCEEEEecccC-------cEEeccccCC
Confidence            776443  778888888899999999999999999986       8999988653

>PTZ00420 coronin; Provisional

Probab=99.44  E-value=1.6e-10  Score=125.42  Aligned_cols=256  Identities=12%  Similarity=0.089  Sum_probs=162.8

Q ss_pred             CCCEEEEEEec-CCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCC-CCEEEEEEeeCCCCCCCCcceeEEEecc
Q 004971          331 NNKFIAVATRR-PTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD-SSRVGYHKCRGGSTREDGNNQLLLENIK  408 (721)
Q Consensus       331 dG~~la~~~~~-~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd-g~~l~~~~~~~~~~~~~~~~~l~~~~~~  408 (721)
                      +++++++.-.. .|+....|.+|+.....  .+..+.+|...+..++|+|+ +..|+..+.++.         +.++++.
T Consensus        37 n~~~~A~~w~~~gGG~~gvI~L~~~~r~~--~v~~L~gH~~~V~~lafsP~~~~lLASgS~Dgt---------IrIWDi~  105 (568)
T PTZ00420         37 SSGFVAVPWEVEGGGLIGAIRLENQMRKP--PVIKLKGHTSSILDLQFNPCFSEILASGSEDLT---------IRVWEIP  105 (568)
T ss_pred             CCCeEEEEEEcCCCCceeEEEeeecCCCc--eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCe---------EEEEECC
Confidence            66777764332 34556678899876543  44445667788899999997 677777665554         4555554


Q ss_pred             CCCC----------cceecccCCCCceeCcCCCEEEE-E-eCCcEEEEECCCCceE-EEe-ecCceeeEEcCCCCeEEEE
Q 004971          409 SPLP----------DISLFRFDGSFPSFSPKGDRIAF-V-EFPGVYVVNSDGSNRR-QVY-FKNAFSTVWDPVREAVVYT  474 (721)
Q Consensus       409 ~~~~----------~~~~~~~~~~~~~~SpDG~~la~-~-~~~~l~v~d~~~g~~~-~l~-~~~~~~~~~spdg~~la~~  474 (721)
                      ....          .+.........++|+|++..++. + .++.|.+||+.+++.. .+. ...+..+.|+|||+.|+.+
T Consensus       106 t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~  185 (568)
T PTZ00420        106 HNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGT  185 (568)
T ss_pred             CCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEE
Confidence            3210          11112223456799999987654 3 4789999999887643 232 4567899999999999877


Q ss_pred             ecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCc-----ceEEccCCCEEEEEEeeC-CceeEEEEECCC-Ccc
Q 004971          475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNA-----FPSVSPDGKWIVFRSTRT-GYKNLYIMDAEG-GEG  547 (721)
Q Consensus       475 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~SpDg~~l~~~s~~~-g~~~l~~~d~~~-g~~  547 (721)
                      +       .++.++||++....     ....+..+.+...     ...|++|+++|+..+... ..++|.+||+.. +++
T Consensus       186 s-------~D~~IrIwD~Rsg~-----~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p  253 (568)
T PTZ00420        186 C-------VGKHMHIIDPRKQE-----IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA  253 (568)
T ss_pred             e-------cCCEEEEEECCCCc-----EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc
Confidence            5       46789999876532     4445555543221     124569999988876532 235799999985 332


Q ss_pred             cceEECc--CCCcCceeeEEccC-CCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCC
Q 004971          548 YGLHRLT--EGPWSDTMCNWSPD-GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG  619 (721)
Q Consensus       548 ~~~~~l~--~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG  619 (721)
                        +..+.  .... .-.+.|.++ |..++.+..+.       .|++|++..+....+....+......++|.|+.
T Consensus       254 --l~~~~ld~~~~-~L~p~~D~~tg~l~lsGkGD~-------tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        254 --LVTMSIDNASA-PLIPHYDESTGLIYLIGKGDG-------NCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             --eEEEEecCCcc-ceEEeeeCCCCCEEEEEECCC-------eEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence              33222  2222 223556555 66666665554       899999988766666543233445678888863

>PTZ00421 coronin; Provisional

Probab=99.43  E-value=1.1e-10  Score=125.81  Aligned_cols=259  Identities=13%  Similarity=0.076  Sum_probs=160.7

Q ss_pred             eecCCCCEEEEEEecCCCCeeeEEEEECCCCceEE-eecccCCCCcccCcEEcC-CCCEEEEEEeeCCCCCCCCcceeEE
Q 004971          327 TSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIE-LTRFVSPKTHHLNPFISP-DSSRVGYHKCRGGSTREDGNNQLLL  404 (721)
Q Consensus       327 ~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~-l~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~~~~~~~~l~~  404 (721)
                      ++. +.+++++.-...|+   ...++.-+.|+... .....+|...+..++|+| +++.|+..+.++.         +.+
T Consensus        36 ~~~-n~~~~a~~w~~~gg---~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt---------IkI  102 (493)
T PTZ00421         36 IAC-NDRFIAVPWQQLGS---TAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT---------IMG  102 (493)
T ss_pred             EeE-CCceEEEEEecCCc---eEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE---------EEE
Confidence            455 66777764333222   12333333443211 112345677788999999 8888888776655         444


Q ss_pred             EeccCCC------Cccee---cccCCCCceeCcCC-CEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCe
Q 004971          405 ENIKSPL------PDISL---FRFDGSFPSFSPKG-DRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREA  470 (721)
Q Consensus       405 ~~~~~~~------~~~~~---~~~~~~~~~~SpDG-~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~  470 (721)
                      +++....      ..+..   ....+..++|+|++ ..|+..+ ++.|.+||+.+++.....   ...+..+.|+|||+.
T Consensus       103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~l  182 (493)
T PTZ00421        103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL  182 (493)
T ss_pred             EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCE
Confidence            5543221      11111   12233457899986 4566654 788999999988754333   456889999999999


Q ss_pred             EEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCC-CCcceEEccCCCEEEEEEe-eCCceeEEEEECCCCccc
Q 004971          471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRST-RTGYKNLYIMDAEGGEGY  548 (721)
Q Consensus       471 la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~SpDg~~l~~~s~-~~g~~~l~~~d~~~g~~~  548 (721)
                      |+.++       .++.++||++....     ....+..+.. ......|.+++..|+.... ...+..|.+||+.+... 
T Consensus       183 Latgs-------~Dg~IrIwD~rsg~-----~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~-  249 (493)
T PTZ00421        183 LCTTS-------KDKKLNIIDPRDGT-----IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS-  249 (493)
T ss_pred             EEEec-------CCCEEEEEECCCCc-----EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC-
Confidence            98876       57899999986532     3445555442 3345789999888876653 23467899999976542 


Q ss_pred             ceEECcC-CCcCceeeEEccCCCEEEEEEc-cCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCC
Q 004971          549 GLHRLTE-GPWSDTMCNWSPDGEWIAFASD-RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD  618 (721)
Q Consensus       549 ~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~-~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpD  618 (721)
                      ....... .......+.|++|++.|+.++. ++       .|++||+..++...............++|.|.
T Consensus       250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg-------~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG-------NIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC-------eEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence            1222221 1223456789999998888764 43       89999999887665543222233455666663

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=1.2e-10  Score=108.18  Aligned_cols=269  Identities=11%  Similarity=0.101  Sum_probs=176.1

Q ss_pred             ceeccC-CeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeC--CCCCcccCceeecCCCCEEEEEEecCCCCeee
Q 004971          272 PCWVDE-STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVT--PPGLHAFTPATSPGNNKFIAVATRRPTSSYRH  348 (721)
Q Consensus       272 ~~ws~d-g~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~  348 (721)
                      .+|+|- |.++++  ...+..+.+|.....+..       ..+.+.  .+...++.++||| .|++|+.++     -+..
T Consensus        20 ~awhp~~g~ilAs--cg~Dk~vriw~~~~~~s~-------~ck~vld~~hkrsVRsvAwsp-~g~~La~aS-----FD~t   84 (312)
T KOG0645|consen   20 VAWHPGKGVILAS--CGTDKAVRIWSTSSGDSW-------TCKTVLDDGHKRSVRSVAWSP-HGRYLASAS-----FDAT   84 (312)
T ss_pred             EEeccCCceEEEe--ecCCceEEEEecCCCCcE-------EEEEeccccchheeeeeeecC-CCcEEEEee-----ccce
Confidence            478887 777774  344778888865433322       222222  2355688999999 999998865     4455


Q ss_pred             EEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC-----CcceecccCCCC
Q 004971          349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL-----PDISLFRFDGSF  423 (721)
Q Consensus       349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~  423 (721)
                      +.+|.-..++...+..+++|...+.+++||++|.+|+..+.+..         +|++.+....     .-+.....++..
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKS---------VWiWe~deddEfec~aVL~~HtqDVK~  155 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKS---------VWIWEIDEDDEFECIAVLQEHTQDVKH  155 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCe---------EEEEEecCCCcEEEEeeeccccccccE
Confidence            78888888888788888899999999999999999999887666         6777665331     123334456677


Q ss_pred             ceeCcCCCEEEEEe-CCcEEEEECC-CCc---eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          424 PSFSPKGDRIAFVE-FPGVYVVNSD-GSN---RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       424 ~~~SpDG~~la~~~-~~~l~v~d~~-~g~---~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      ..|+|....|+..+ ++.|.+|.-. +..   ...|.  ..-+...+|.|.|.+|+.++       ++..+.||..-.. 
T Consensus       156 V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s-------dD~tv~Iw~~~~~-  227 (312)
T KOG0645|consen  156 VIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS-------DDGTVSIWRLYTD-  227 (312)
T ss_pred             EEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec-------CCcceEeeeeccC-
Confidence            89999877777765 7888888876 443   22333  33567899999999999986       6789999984321 


Q ss_pred             CCCccceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc-cceEEC----cCCCcCceeeEEccC-C
Q 004971          497 VDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG-YGLHRL----TEGPWSDTMCNWSPD-G  569 (721)
Q Consensus       497 ~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~-~~~~~l----~~~~~~~~~~~~SpD-G  569 (721)
                               ++. +....+.+.|- + ..|+....   +..|.++-...+-. .....+    ..+...++.+.|.|. .
T Consensus       228 ---------~~~~~sr~~Y~v~W~-~-~~IaS~gg---D~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~  293 (312)
T KOG0645|consen  228 ---------LSGMHSRALYDVPWD-N-GVIASGGG---DDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS  293 (312)
T ss_pred             ---------cchhcccceEeeeec-c-cceEeccC---CCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC
Confidence                     111 22345557776 3 34555543   55555554332210 001111    134457889999996 4


Q ss_pred             CEEEEEEccCCCCCCceeEEEEec
Q 004971          570 EWIAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       570 ~~l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                      .+|+.+++++       .|.+|.+
T Consensus       294 ~~L~s~~DDG-------~v~~W~l  310 (312)
T KOG0645|consen  294 NRLASGGDDG-------IVNFWEL  310 (312)
T ss_pred             CceeecCCCc-------eEEEEEe
Confidence            4555555553       5666654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.42  E-value=1.5e-10  Score=119.03  Aligned_cols=154  Identities=16%  Similarity=0.229  Sum_probs=114.2

Q ss_pred             CceeeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC--ccceEEcccCCCCCcceEEccCCC-EEEEEEeeCC
Q 004971          458 NAFSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDG--VSAVRRLTTNGKNNAFPSVSPDGK-WIVFRSTRTG  533 (721)
Q Consensus       458 ~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~SpDg~-~l~~~s~~~g  533 (721)
                      .+.++.|.| |..+|++.+       +++.++||++..++...  ......|+.+...+..+.|+|=-. .|+.++.   
T Consensus       629 ~vtDl~WdPFD~~rLAVa~-------ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy---  698 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVAT-------DDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY---  698 (1012)
T ss_pred             eeeecccCCCChHHeeecc-------cCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc---
Confidence            467889998 788899886       68999999999876421  123456777777888899998433 4445554   


Q ss_pred             ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC-CCCCcCC
Q 004971          534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG-SAGRANH  612 (721)
Q Consensus       534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~  612 (721)
                      +..|.+||+.+++.  -..+..+...+..++|||||++++....++       .|++|+..+++.......+ .+..-..
T Consensus       699 d~Ti~lWDl~~~~~--~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg-------~~rVy~Prs~e~pv~Eg~gpvgtRgAR  769 (1012)
T KOG1445|consen  699 DSTIELWDLANAKL--YSRLVGHTDQIFGIAWSPDGRRIATVCKDG-------TLRVYEPRSREQPVYEGKGPVGTRGAR  769 (1012)
T ss_pred             cceeeeeehhhhhh--hheeccCcCceeEEEECCCCcceeeeecCc-------eEEEeCCCCCCCccccCCCCccCccee
Confidence            67899999998875  456777777889999999999999998886       8999998877543221111 1223346


Q ss_pred             eEECCCCCEEEEEEecCC
Q 004971          613 PYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       613 ~~~SpDG~~l~~~~~~~~  630 (721)
                      +.|.=||++|++...+.-
T Consensus       770 i~wacdgr~viv~Gfdk~  787 (1012)
T KOG1445|consen  770 ILWACDGRIVIVVGFDKS  787 (1012)
T ss_pred             EEEEecCcEEEEeccccc
Confidence            889999999998877653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.42  E-value=3.5e-12  Score=120.58  Aligned_cols=275  Identities=13%  Similarity=0.131  Sum_probs=182.7

Q ss_pred             CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC-CCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEEC
Q 004971          369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP-LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNS  446 (721)
Q Consensus       369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~  446 (721)
                      ..++.+..|||||++|+..+.++-...|.....-...++.-. ...+......+..+.||.|...||... ++.|.+|.+
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence            345667899999999998777665321111000011111100 112222233344568999999888874 889999999


Q ss_pred             CCCceEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCC
Q 004971          447 DGSNRRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG  522 (721)
Q Consensus       447 ~~g~~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg  522 (721)
                      .+|...+-+    ..++..+.||.|+..++.++       -+..++|.-+....     ..+.+..+...+....|++||
T Consensus       293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~s-------fD~tvRiHGlKSGK-----~LKEfrGHsSyvn~a~ft~dG  360 (508)
T KOG0275|consen  293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSAS-------FDQTVRIHGLKSGK-----CLKEFRGHSSYVNEATFTDDG  360 (508)
T ss_pred             ecchHHHHhhhhhccCeeEEEEccCcchhhccc-------ccceEEEeccccch-----hHHHhcCccccccceEEcCCC
Confidence            998753322    56789999999999998876       35566666665433     556666777778889999999


Q ss_pred             CEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCC-CEEEEEEccCCCCCCceeEEEEecCCCceEEe
Q 004971          523 KWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG-EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL  601 (721)
Q Consensus       523 ~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l  601 (721)
                      .+|+..+.   +..+.+|+..+++....-........+..+..-|.. .+++++....       .||++++.+.-.+..
T Consensus       361 ~~iisaSs---DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn-------tv~imn~qGQvVrsf  430 (508)
T KOG0275|consen  361 HHIISASS---DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN-------TVYIMNMQGQVVRSF  430 (508)
T ss_pred             CeEEEecC---CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC-------eEEEEeccceEEeee
Confidence            99999987   789999999988762111112223445566665654 4555555443       899999987555444


Q ss_pred             eecC-CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EEeccCCCCCCCceecCC--c
Q 004971          602 IQSG-SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLTQNSFEDGTPAWGPR--F  677 (721)
Q Consensus       602 ~~~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt~~~~~~~~~~~sp~--~  677 (721)
                      .... ..+.+.....||.|.|+|....+.                 -+|.+...+|++ +.++-+...+...+..|.  .
T Consensus       431 sSGkREgGdFi~~~lSpkGewiYcigED~-----------------vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNl  493 (508)
T KOG0275|consen  431 SSGKREGGDFINAILSPKGEWIYCIGEDG-----------------VLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNL  493 (508)
T ss_pred             ccCCccCCceEEEEecCCCcEEEEEccCc-----------------EEEEEEeecCceeeeeecccccccccccCcccch
Confidence            3211 234556778999999999888765                 399999776654 677777777777777774  4


Q ss_pred             CCccc
Q 004971          678 IRPVD  682 (721)
Q Consensus       678 l~~~~  682 (721)
                      ||.-+
T Consensus       494 lAsYs  498 (508)
T KOG0275|consen  494 LASYS  498 (508)
T ss_pred             hhhhc
Confidence            44443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.41  E-value=1.2e-11  Score=123.49  Aligned_cols=274  Identities=11%  Similarity=0.046  Sum_probs=186.6

Q ss_pred             cceecc-CCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeE
Q 004971          271 WPCWVD-ESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHI  349 (721)
Q Consensus       271 ~~~ws~-dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l  349 (721)
                      ...|.| .+.+++  ....++.+.||.++....        ..+...+|...+..++|+. +|..+..++     .+..|
T Consensus       219 ai~~fp~~~hLlL--S~gmD~~vklW~vy~~~~--------~lrtf~gH~k~Vrd~~~s~-~g~~fLS~s-----fD~~l  282 (503)
T KOG0282|consen  219 AIQWFPKKGHLLL--SGGMDGLVKLWNVYDDRR--------CLRTFKGHRKPVRDASFNN-CGTSFLSAS-----FDRFL  282 (503)
T ss_pred             hhhhccceeeEEE--ecCCCceEEEEEEecCcc--------eehhhhcchhhhhhhhccc-cCCeeeeee-----cceee
Confidence            347888 466666  344489999998887542        4555667777889999999 998877644     45679


Q ss_pred             EEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC--cceecccCCCCceeC
Q 004971          350 ELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFS  427 (721)
Q Consensus       350 ~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~S  427 (721)
                      .+||.++|+...-...   ..-...+.+.||+..++++...+.        +|..+|++.+..  .....-.....+.|-
T Consensus       283 KlwDtETG~~~~~f~~---~~~~~cvkf~pd~~n~fl~G~sd~--------ki~~wDiRs~kvvqeYd~hLg~i~~i~F~  351 (503)
T KOG0282|consen  283 KLWDTETGQVLSRFHL---DKVPTCVKFHPDNQNIFLVGGSDK--------KIRQWDIRSGKVVQEYDRHLGAILDITFV  351 (503)
T ss_pred             eeeccccceEEEEEec---CCCceeeecCCCCCcEEEEecCCC--------cEEEEeccchHHHHHHHhhhhheeeeEEc
Confidence            9999999985443322   444667899999977777654443        467777776521  111111123346788


Q ss_pred             cCCCEEEEE-eCCcEEEEECCCCceEEEe--ec--CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccc
Q 004971          428 PKGDRIAFV-EFPGVYVVNSDGSNRRQVY--FK--NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA  502 (721)
Q Consensus       428 pDG~~la~~-~~~~l~v~d~~~g~~~~l~--~~--~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  502 (721)
                      ++|++.+.. .+..+.+|+...+.+....  ..  ....+...|.+++++..+       .++.+.|+.....-.  ...
T Consensus       352 ~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs-------~dN~i~ifs~~~~~r--~nk  422 (503)
T KOG0282|consen  352 DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS-------MDNYIAIFSTVPPFR--LNK  422 (503)
T ss_pred             cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc-------cCceEEEEecccccc--cCH
Confidence            999988877 4778999998776643332  22  334677899999998876       356666666442211  012


Q ss_pred             eEEcccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCC-EEEEEEccC
Q 004971          503 VRRLTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE-WIAFASDRD  579 (721)
Q Consensus       503 ~~~l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~  579 (721)
                      .++...+.  +....+.|||||++|+..+.   +..+++||..+-+.  +..+..+...+....|.|-.. .++.++.++
T Consensus       423 kK~feGh~vaGys~~v~fSpDG~~l~SGds---dG~v~~wdwkt~kl--~~~lkah~~~ci~v~wHP~e~Skvat~~w~G  497 (503)
T KOG0282|consen  423 KKRFEGHSVAGYSCQVDFSPDGRTLCSGDS---DGKVNFWDWKTTKL--VSKLKAHDQPCIGVDWHPVEPSKVATCGWDG  497 (503)
T ss_pred             hhhhcceeccCceeeEEEcCCCCeEEeecC---CccEEEeechhhhh--hhccccCCcceEEEEecCCCcceeEecccCc
Confidence            33344443  45566899999999998876   78999999987664  666777777778899999754 566666554


Q ss_pred             CCCCCceeEEEEe
Q 004971          580 NPGSGSFEMYLIH  592 (721)
Q Consensus       580 ~~~~~~~~i~~~d  592 (721)
                             .|++|+
T Consensus       498 -------~Ikiwd  503 (503)
T KOG0282|consen  498 -------LIKIWD  503 (503)
T ss_pred             -------eeEecC
Confidence                   788775

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.41  E-value=3.4e-12  Score=120.65  Aligned_cols=272  Identities=14%  Similarity=0.122  Sum_probs=182.2

Q ss_pred             CcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeeccc------CCCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971          320 LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFV------SPKTHHLNPFISPDSSRVGYHKCRGGS  393 (721)
Q Consensus       320 ~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~------~~~~~~~~~~~Spdg~~l~~~~~~~~~  393 (721)
                      ..+....||| ||++|+.     ++.++-|.+||..+|+.++-....      -....+.++.||.|...|+..+.++. 
T Consensus       214 Sh~EcA~FSP-DgqyLvs-----gSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk-  286 (508)
T KOG0275|consen  214 SHVECARFSP-DGQYLVS-----GSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK-  286 (508)
T ss_pred             cchhheeeCC-CCceEee-----ccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc-
Confidence            3556788999 9999987     445667999999999865432221      12445677899999998888776666 


Q ss_pred             CCCCCcceeEEEeccCCCCcce-ecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceE-EEe--ecCceeeEEcCCC
Q 004971          394 TREDGNNQLLLENIKSPLPDIS-LFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRR-QVY--FKNAFSTVWDPVR  468 (721)
Q Consensus       394 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~-~l~--~~~~~~~~~spdg  468 (721)
                            ..+|......-..++. ........+.||.|++.|...+ +..+.+-.+.+|+.. ...  ...+....|++||
T Consensus       287 ------IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG  360 (508)
T KOG0275|consen  287 ------IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDG  360 (508)
T ss_pred             ------EEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCC
Confidence                  4444443222122221 2223445679999999988875 667777788887743 222  4567789999999


Q ss_pred             CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC--CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971          469 EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN--GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE  546 (721)
Q Consensus       469 ~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~  546 (721)
                      .++..++       .++.+++|......     ....+...  +..+..+..-|.+---.+..++  .+.+|+++..+.-
T Consensus       361 ~~iisaS-------sDgtvkvW~~Ktte-----C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr--sntv~imn~qGQv  426 (508)
T KOG0275|consen  361 HHIISAS-------SDGTVKVWHGKTTE-----CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR--SNTVYIMNMQGQV  426 (508)
T ss_pred             CeEEEec-------CCccEEEecCcchh-----hhhhccCCCCcccceeEEEcCCCCceEEEEcC--CCeEEEEeccceE
Confidence            9999886       68999999876543     22222222  2344455555654433333443  6789999998543


Q ss_pred             ccceEECcCCC---cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEE
Q 004971          547 GYGLHRLTEGP---WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV  623 (721)
Q Consensus       547 ~~~~~~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~  623 (721)
                         ++.++.+.   +.......||.|.|+++...+.       .+|.+.+.+|+..+.... +...+-.++-.|-...|+
T Consensus       427 ---VrsfsSGkREgGdFi~~~lSpkGewiYcigED~-------vlYCF~~~sG~LE~tl~V-hEkdvIGl~HHPHqNllA  495 (508)
T KOG0275|consen  427 ---VRSFSSGKREGGDFINAILSPKGEWIYCIGEDG-------VLYCFSVLSGKLERTLPV-HEKDVIGLTHHPHQNLLA  495 (508)
T ss_pred             ---EeeeccCCccCCceEEEEecCCCcEEEEEccCc-------EEEEEEeecCceeeeeec-ccccccccccCcccchhh
Confidence               66666542   3335678999999999999885       899999999987765543 556666667677766666


Q ss_pred             EEEecC
Q 004971          624 FTSDYG  629 (721)
Q Consensus       624 ~~~~~~  629 (721)
                      ..+.++
T Consensus       496 sYsEDg  501 (508)
T KOG0275|consen  496 SYSEDG  501 (508)
T ss_pred             hhcccc
Confidence            655554

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.41  E-value=1.8e-11  Score=116.30  Aligned_cols=332  Identities=15%  Similarity=0.132  Sum_probs=195.3

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecC-CCCCccccccCCCCCEEEEEecCCCCCCcccceeee
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTP-YGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLST  249 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~-~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~  249 (721)
                      ||  +|++|+..++.           +|..-|..+-+..+|-. ....... .|+.|..++..+.+..           .
T Consensus        17 Sp--~g~yiAs~~~y-----------rlviRd~~tlq~~qlf~cldki~yi-eW~ads~~ilC~~yk~-----------~   71 (447)
T KOG4497|consen   17 SP--CGNYIASLSRY-----------RLVIRDSETLQLHQLFLCLDKIVYI-EWKADSCHILCVAYKD-----------P   71 (447)
T ss_pred             CC--CCCeeeeeeee-----------EEEEeccchhhHHHHHHHHHHhhhe-eeeccceeeeeeeecc-----------c
Confidence            99  99999987655           67766665555444321 2222333 7889998888766544           3


Q ss_pred             eEEEEEcCCCceeEEE-eccCC--cceeccCCe-EEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCc
Q 004971          250 DIYIFLTRDGTQRVKI-VENGG--WPCWVDEST-LFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTP  325 (721)
Q Consensus       250 ~i~~~d~~~g~~~~l~-~~~~~--~~~ws~dg~-l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (721)
                      .|.+|++..-+-.--. .+..+  ...|||||| ++.  .++-+-.+.+|.+....          -..+......+...
T Consensus        72 ~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~--tseF~lriTVWSL~t~~----------~~~~~~pK~~~kg~  139 (447)
T KOG4497|consen   72 KVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILL--TSEFDLRITVWSLNTQK----------GYLLPHPKTNVKGY  139 (447)
T ss_pred             eEEEEEeecceeEEEeccCCCcceeeeECCCcceEee--eecceeEEEEEEeccce----------eEEecccccCceeE
Confidence            6888888655543322 22333  458999997 444  23335677888554433          22233334455788


Q ss_pred             eeecCCCCEEEEEEecCCCCeeeEEEEECCCCce-EEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEE
Q 004971          326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF-IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLL  404 (721)
Q Consensus       326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~-~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~  404 (721)
                      +|.| ||++.+..+++.-.+..+|.     +-+. ..+.....+..+..++-|||||..|++-..--.       ..++.
T Consensus       140 ~f~~-dg~f~ai~sRrDCkdyv~i~-----~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le-------ykv~a  206 (447)
T KOG4497|consen  140 AFHP-DGQFCAILSRRDCKDYVQIS-----SCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE-------YKVYA  206 (447)
T ss_pred             EECC-CCceeeeeecccHHHHHHHH-----hhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh-------heeee
Confidence            9999 99999987766432222221     1111 112222222344567889999999887432222       22333


Q ss_pred             EeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEEC-------------------------------------
Q 004971          405 ENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNS-------------------------------------  446 (721)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~-------------------------------------  446 (721)
                      +.-..+          ..+.+|||.++.|++.+ +..+.+.+.                                     
T Consensus       207 Ye~~lG----------~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~c  276 (447)
T KOG4497|consen  207 YERGLG----------LKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHC  276 (447)
T ss_pred             eeeccc----------eeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccc
Confidence            221111          23357777777766652 111111000                                     


Q ss_pred             --------CCC--c-----------eEEEe-----------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971          447 --------DGS--N-----------RRQVY-----------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV  494 (721)
Q Consensus       447 --------~~g--~-----------~~~l~-----------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~  494 (721)
                              +-+  .           +..+.           ..++..++||+|..+++...+     .-.+.+.||++..
T Consensus       277 Lsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd-----~~PnalW~Wdlq~  351 (447)
T KOG4497|consen  277 LSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND-----KYPNALWLWDLQN  351 (447)
T ss_pred             cccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC-----CCCceEEEEechh
Confidence                    000  0           00000           124567899999999988753     1234455665543


Q ss_pred             cCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEE
Q 004971          495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF  574 (721)
Q Consensus       495 ~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~  574 (721)
                      -      ++..+-.....+..+.|.|.--+|++...   ..+||.|.+.+-.   ........+.+..+.|.-+|..|+.
T Consensus       352 l------~l~avLiQk~piraf~WdP~~prL~vctg---~srLY~W~psg~~---~V~vP~~GF~i~~l~W~~~g~~i~l  419 (447)
T KOG4497|consen  352 L------KLHAVLIQKHPIRAFEWDPGRPRLVVCTG---KSRLYFWAPSGPR---VVGVPKKGFNIQKLQWLQPGEFIVL  419 (447)
T ss_pred             h------hhhhhhhhccceeEEEeCCCCceEEEEcC---CceEEEEcCCCce---EEecCCCCceeeeEEecCCCcEEEE
Confidence            2      33333333456788999999999988876   6789999998644   5556655577889999999999998


Q ss_pred             EEccC
Q 004971          575 ASDRD  579 (721)
Q Consensus       575 ~~~~~  579 (721)
                      .+.+.
T Consensus       420 ~~kDa  424 (447)
T KOG4497|consen  420 CGKDA  424 (447)
T ss_pred             EcCCc
Confidence            88763

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.41  E-value=1e-10  Score=136.46  Aligned_cols=282  Identities=9%  Similarity=0.057  Sum_probs=177.7

Q ss_pred             ceeccCCeEEEEeccCCCCcEEEEEEecC--CCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeE
Q 004971          272 PCWVDESTLFFHRKSEEDDWISVYKVILP--QTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHI  349 (721)
Q Consensus       272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l  349 (721)
                      .+|++||+++++  ...++.+.||.....  ...    ....+.........+..++|+|.++.+|+...     .++.|
T Consensus       489 i~fs~dg~~lat--gg~D~~I~iwd~~~~~~~~~----~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~-----~Dg~v  557 (793)
T PLN00181        489 IGFDRDGEFFAT--AGVNKKIKIFECESIIKDGR----DIHYPVVELASRSKLSGICWNSYIKSQVASSN-----FEGVV  557 (793)
T ss_pred             EEECCCCCEEEE--EeCCCEEEEEECCccccccc----ccccceEEecccCceeeEEeccCCCCEEEEEe-----CCCeE
Confidence            489999987764  334789999964321  100    00001111111224567788772356666533     35569


Q ss_pred             EEEECCCCceEEeecccCCCCcccCcEEcC-CCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee-cccCCCCcee-
Q 004971          350 ELFDLVKNKFIELTRFVSPKTHHLNPFISP-DSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL-FRFDGSFPSF-  426 (721)
Q Consensus       350 ~l~dl~tg~~~~l~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~-  426 (721)
                      .+||+.+++  .+.....|...+..++|+| ++..|+..+.++.         +.++++..+...... .......+.| 
T Consensus       558 ~lWd~~~~~--~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~---------v~iWd~~~~~~~~~~~~~~~v~~v~~~  626 (793)
T PLN00181        558 QVWDVARSQ--LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS---------VKLWSINQGVSIGTIKTKANICCVQFP  626 (793)
T ss_pred             EEEECCCCe--EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCE---------EEEEECCCCcEEEEEecCCCeEEEEEe
Confidence            999999876  3344456677788999997 6777777665544         555666543211111 1112233566 


Q ss_pred             CcCCCEEEEEe-CCcEEEEECCCCce--EEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC-Cc
Q 004971          427 SPKGDRIAFVE-FPGVYVVNSDGSNR--RQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD-GV  500 (721)
Q Consensus       427 SpDG~~la~~~-~~~l~v~d~~~g~~--~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~-~~  500 (721)
                      +++|..|++.+ ++.|++||+..+..  ..+.  ...+..+.|. ++..|+.++       .++.+.||++...... ..
T Consensus       627 ~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s-------~D~~ikiWd~~~~~~~~~~  698 (793)
T PLN00181        627 SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS-------TDNTLKLWDLSMSISGINE  698 (793)
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE-------CCCEEEEEeCCCCccccCC
Confidence            56788888874 78999999976542  2232  4467788887 777887775       5788999998643110 01


Q ss_pred             cceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE-----------CcCCCcCceeeEEccCC
Q 004971          501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR-----------LTEGPWSDTMCNWSPDG  569 (721)
Q Consensus       501 ~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~-----------l~~~~~~~~~~~~SpDG  569 (721)
                      .....+..+......++|+|++++|+..+.   +..|++|+...........           +..+...+..++|+|+|
T Consensus       699 ~~l~~~~gh~~~i~~v~~s~~~~~lasgs~---D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~  775 (793)
T PLN00181        699 TPLHSFMGHTNVKNFVGLSVSDGYIATGSE---TNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS  775 (793)
T ss_pred             cceEEEcCCCCCeeEEEEcCCCCEEEEEeC---CCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence            244566666656677899999999999887   7889999976543200000           11122346789999999


Q ss_pred             CEEEEEEccCCCCCCceeEEEEec
Q 004971          570 EWIAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       570 ~~l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                      +.|+.+..++       .|.+|++
T Consensus       776 ~~lva~~~dG-------~I~i~~~  792 (793)
T PLN00181        776 STLVAANSTG-------NIKILEM  792 (793)
T ss_pred             CeEEEecCCC-------cEEEEec
Confidence            9998888775       7888875

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.41  E-value=1.6e-11  Score=123.37  Aligned_cols=268  Identities=15%  Similarity=0.118  Sum_probs=171.7

Q ss_pred             CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec-------ccCCCCceeCcCCCEEEEE-eCCc
Q 004971          369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF-------RFDGSFPSFSPKGDRIAFV-EFPG  440 (721)
Q Consensus       369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~SpDG~~la~~-~~~~  440 (721)
                      ...+...++.|.|-+++..+.+..         +..+++.+-...+..+       ......++||+.|..|+++ +..+
T Consensus       167 tk~Vsal~~Dp~GaR~~sGs~Dy~---------v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq  237 (641)
T KOG0772|consen  167 TKIVSALAVDPSGARFVSGSLDYT---------VKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ  237 (641)
T ss_pred             ceEEEEeeecCCCceeeeccccce---------EEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence            344566788999999987666554         4555654431111111       1234568999999988777 5778


Q ss_pred             EEEEECCCCceEEEe------------e---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE
Q 004971          441 VYVVNSDGSNRRQVY------------F---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR  505 (721)
Q Consensus       441 l~v~d~~~g~~~~l~------------~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  505 (721)
                      ..++|-+|-+.....            .   ..+....|.|+.+..+.++      ..++.++||.++-...    ....
T Consensus       238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~------s~DgtlRiWdv~~~k~----q~qV  307 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC------SYDGTLRIWDVNNTKS----QLQV  307 (641)
T ss_pred             eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe------cCCCcEEEEecCCchh----heeE
Confidence            888888876654332            1   1345678999999888887      4789999999986543    3333


Q ss_pred             cccC---C--CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC---cCCCcCceeeEEccCCCEEEEEEc
Q 004971          506 LTTN---G--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL---TEGPWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       506 l~~~---~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l---~~~~~~~~~~~~SpDG~~l~~~~~  577 (721)
                      +...   .  ..+..++|+|||++|+....   +..|.+|+..+........+   ......++.++||+||++|+..+.
T Consensus       308 ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~---DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~  384 (641)
T KOG0772|consen  308 IKTKPAGGKRVPVTSCAWNRDGKLIAAGCL---DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF  384 (641)
T ss_pred             EeeccCCCcccCceeeecCCCcchhhhccc---CCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccC
Confidence            3221   1  35567899999999998887   78899999743321111111   122336789999999999998887


Q ss_pred             cCCCCCCceeEEEEecCCCceEEeeec--CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971          578 RDNPGSGSFEMYLIHPNGTGLRKLIQS--GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       578 ~~~~~~~~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                      +.       .|.+||+..-+.-.....  .........+||||.+.|+....-....           ..+.|+.+|..+
T Consensus       385 D~-------tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~-----------~~g~L~f~d~~t  446 (641)
T KOG0772|consen  385 DD-------TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGM-----------TAGTLFFFDRMT  446 (641)
T ss_pred             CC-------ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCC-----------CCceEEEEeccc
Confidence            75       899999976432211111  1223446789999999887655432211           123577777655


Q ss_pred             CC-eEEeccCCCCCCCceecCC
Q 004971          656 SD-LKRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       656 ~~-~~~lt~~~~~~~~~~~sp~  676 (721)
                      =. +..|--....+-...|.|-
T Consensus       447 ~d~v~ki~i~~aSvv~~~Whpk  468 (641)
T KOG0772|consen  447 LDTVYKIDISTASVVRCLWHPK  468 (641)
T ss_pred             eeeEEEecCCCceEEEEeecch
Confidence            33 3344333444556778873

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.38  E-value=2.8e-09  Score=108.49  Aligned_cols=251  Identities=13%  Similarity=0.114  Sum_probs=134.1

Q ss_pred             eeecCCCCEEEEEEe-----cCCCCeeeEEEEECCCCceEE-eecccC----CCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971          326 ATSPGNNKFIAVATR-----RPTSSYRHIELFDLVKNKFIE-LTRFVS----PKTHHLNPFISPDSSRVGYHKCRGGSTR  395 (721)
Q Consensus       326 ~~sp~dG~~la~~~~-----~~g~~~~~l~l~dl~tg~~~~-l~~~~~----~~~~~~~~~~Spdg~~l~~~~~~~~~~~  395 (721)
                      .+|| ||+.|+.+..     ..|.....|.+||+++.+... +.....    .......+++||||++|++......   
T Consensus        52 ~~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~---  127 (352)
T TIGR02658        52 VVAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPS---  127 (352)
T ss_pred             eECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCC---
Confidence            4999 9999987654     123345569999999988542 221111    0222347899999999998766644   


Q ss_pred             CCCcceeEEEeccCCCCcceecccC-CCCceeCcCCCEEEEEeCCcEEEEECC-CCceE----EEeec----CceeeEEc
Q 004971          396 EDGNNQLLLENIKSPLPDISLFRFD-GSFPSFSPKGDRIAFVEFPGVYVVNSD-GSNRR----QVYFK----NAFSTVWD  465 (721)
Q Consensus       396 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~SpDG~~la~~~~~~l~v~d~~-~g~~~----~l~~~----~~~~~~~s  465 (721)
                          ..+.+.|+..... +...... ...+-.+.+.+.++.+.++.+..+.++ .|+..    .++..    ....+.++
T Consensus       128 ----~~V~VvD~~~~kv-v~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~  202 (352)
T TIGR02658       128 ----PAVGVVDLEGKAF-VRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYS  202 (352)
T ss_pred             ----CEEEEEECCCCcE-EEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceE
Confidence                4566777665421 1111100 010111111112222223333332222 11111    11111    01233556


Q ss_pred             C-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC----C---CCCcceEEccCCCEEEEEEee------
Q 004971          466 P-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN----G---KNNAFPSVSPDGKWIVFRSTR------  531 (721)
Q Consensus       466 p-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~----~---~~~~~~~~SpDg~~l~~~s~~------  531 (721)
                      + ||++++++.        .+++.+.++..+..........++..    .   +.....+++|||++|++....      
T Consensus       203 ~~dg~~~~vs~--------eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~th  274 (352)
T TIGR02658       203 NKSGRLVWPTY--------TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTH  274 (352)
T ss_pred             cCCCcEEEEec--------CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccc
Confidence            6 787666654        24555444322211000011112211    1   112238999999999986431      


Q ss_pred             -CCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCC-EEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971          532 -TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE-WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI  602 (721)
Q Consensus       532 -~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  602 (721)
                       .+..+|+++|..+++.  +..+.-+. ....+++||||+ +|+.+....      ..|.++|+.+++..+-.
T Consensus       275 k~~~~~V~ViD~~t~kv--i~~i~vG~-~~~~iavS~Dgkp~lyvtn~~s------~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       275 KTASRFLFVVDAKTGKR--LRKIELGH-EIDSINVSQDAKPLLYALSTGD------KTLYIFDAETGKELSSV  338 (352)
T ss_pred             cCCCCEEEEEECCCCeE--EEEEeCCC-ceeeEEECCCCCeEEEEeCCCC------CcEEEEECcCCeEEeee
Confidence             2346899999999885  66665443 347899999999 555444332      37999999998765543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.38  E-value=3.8e-11  Score=111.14  Aligned_cols=268  Identities=10%  Similarity=0.060  Sum_probs=171.2

Q ss_pred             eeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEE
Q 004971          273 CWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELF  352 (721)
Q Consensus       273 ~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~  352 (721)
                      .+..+|.++|+.  ..+...++|.. .++ .       ++-...+|...+..+.++- +.++++.     |+.+..+.+|
T Consensus        17 KyN~eGDLlFsc--aKD~~~~vw~s-~nG-e-------rlGty~GHtGavW~~Did~-~s~~liT-----GSAD~t~kLW   79 (327)
T KOG0643|consen   17 KYNREGDLLFSC--AKDSTPTVWYS-LNG-E-------RLGTYDGHTGAVWCCDIDW-DSKHLIT-----GSADQTAKLW   79 (327)
T ss_pred             EecCCCcEEEEe--cCCCCceEEEe-cCC-c-------eeeeecCCCceEEEEEecC-Ccceeee-----ccccceeEEE
Confidence            466688898854  33677788843 333 1       4555566666667777766 7788877     5567779999


Q ss_pred             ECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC------Cccee---cccCCCC
Q 004971          353 DLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL------PDISL---FRFDGSF  423 (721)
Q Consensus       353 dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~---~~~~~~~  423 (721)
                      |+++|+.......   +..+..+.|+++|..+++..+..-..  .  ..+.+.++....      ..+..   .......
T Consensus        80 Dv~tGk~la~~k~---~~~Vk~~~F~~~gn~~l~~tD~~mg~--~--~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~  152 (327)
T KOG0643|consen   80 DVETGKQLATWKT---NSPVKRVDFSFGGNLILASTDKQMGY--T--CFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITS  152 (327)
T ss_pred             EcCCCcEEEEeec---CCeeEEEeeccCCcEEEEEehhhcCc--c--eEEEEEEccCChhhhcccCceEEecCCccceee
Confidence            9999985443332   55677889999999998866543211  1  234444444221      11111   1222345


Q ss_pred             ceeCcCCCEEEEE-eCCcEEEEECCCCceE-EE---eecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971          424 PSFSPKGDRIAFV-EFPGVYVVNSDGSNRR-QV---YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD  498 (721)
Q Consensus       424 ~~~SpDG~~la~~-~~~~l~v~d~~~g~~~-~l---~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~  498 (721)
                      ..|+|-|+.|++. .++.|..||+.+|... ..   ....+.++.+|+|..+++..+       .+.+..++++..-.  
T Consensus       153 a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s-------~Dttakl~D~~tl~--  223 (327)
T KOG0643|consen  153 ALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS-------KDTTAKLVDVRTLE--  223 (327)
T ss_pred             eeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc-------cCccceeeecccee--
Confidence            6899999999888 5889999999987532 22   145788999999999988876       57788888876432  


Q ss_pred             CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc----------cceEECcCCCcCceeeEEccC
Q 004971          499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG----------YGLHRLTEGPWSDTMCNWSPD  568 (721)
Q Consensus       499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~----------~~~~~l~~~~~~~~~~~~SpD  568 (721)
                         ..+..... ..+...+++|-...++.....+ -..+---+...|+.          .++.++..+-+.++.++|+||
T Consensus       224 ---v~Kty~te-~PvN~aaisP~~d~VilgGGqe-A~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd  298 (327)
T KOG0643|consen  224 ---VLKTYTTE-RPVNTAAISPLLDHVILGGGQE-AMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD  298 (327)
T ss_pred             ---eEEEeeec-ccccceecccccceEEecCCce-eeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC
Confidence               22222222 3667789999888887765321 11222222222211          124555666677899999999


Q ss_pred             CCEEEEEEcc
Q 004971          569 GEWIAFASDR  578 (721)
Q Consensus       569 G~~l~~~~~~  578 (721)
                      |+..+.+..+
T Consensus       299 GksYsSGGED  308 (327)
T KOG0643|consen  299 GKSYSSGGED  308 (327)
T ss_pred             CcccccCCCC
Confidence            9965444443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=7.5e-11  Score=126.68  Aligned_cols=238  Identities=15%  Similarity=0.112  Sum_probs=164.9

Q ss_pred             CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECC
Q 004971          369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSD  447 (721)
Q Consensus       369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~  447 (721)
                      ......+.|.|+|+.|+.+..++.       .++|-..-.. ..+-+..........+.-++.+++.. .+..+.+|...
T Consensus        13 t~G~t~i~~d~~gefi~tcgsdg~-------ir~~~~~sd~-e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen   13 TGGLTLICYDPDGEFICTCGSDGD-------IRKWKTNSDE-EEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFP   84 (933)
T ss_pred             cCceEEEEEcCCCCEEEEecCCCc-------eEEeecCCcc-cCCchhhccCceeEEEeecccceEEeeccceEEEeeCC
Confidence            444567899999998888766665       2233221110 11111110112223445555566665 47889999998


Q ss_pred             CCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCE
Q 004971          448 GSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKW  524 (721)
Q Consensus       448 ~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~  524 (721)
                      .++...|.   .-.+...+++-+|++++..+       ++-.+.+..++..+     ..+.+..+.+.+..+.|+|.+..
T Consensus        85 s~~~~~iL~Rftlp~r~~~v~g~g~~iaags-------dD~~vK~~~~~D~s-----~~~~lrgh~apVl~l~~~p~~~f  152 (933)
T KOG1274|consen   85 SGEEDTILARFTLPIRDLAVSGSGKMIAAGS-------DDTAVKLLNLDDSS-----QEKVLRGHDAPVLQLSYDPKGNF  152 (933)
T ss_pred             CCCccceeeeeeccceEEEEecCCcEEEeec-------CceeEEEEeccccc-----hheeecccCCceeeeeEcCCCCE
Confidence            88765333   55788999999999999987       46677777776654     66778888889999999999999


Q ss_pred             EEEEEeeCCceeEEEEECCCCcccceEECcC---C-----CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971          525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE---G-----PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       525 l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~---~-----~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                      ||+.+-   ++.|++|+++++..  ...++.   .     ......++|+|+|..+++...+.       .|.+|+..+.
T Consensus       153 LAvss~---dG~v~iw~~~~~~~--~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-------~Vkvy~r~~w  220 (933)
T KOG1274|consen  153 LAVSSC---DGKVQIWDLQDGIL--SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN-------TVKVYSRKGW  220 (933)
T ss_pred             EEEEec---CceEEEEEcccchh--hhhcccCCccccccccceeeeeeecCCCCeEEeeccCC-------eEEEEccCCc
Confidence            999887   78999999998875  333321   1     22346799999977777777664       8999999888


Q ss_pred             ceEE-eeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971          597 GLRK-LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       597 ~~~~-l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                      +..- |....+...+..++|||.|+||+...-++                 +|-+||.++
T Consensus       221 e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g-----------------~I~vWnv~t  263 (933)
T KOG1274|consen  221 ELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG-----------------QILVWNVDT  263 (933)
T ss_pred             eeheeecccccccceEEEEEcCCCcEEeeeccCC-----------------cEEEEeccc
Confidence            6543 32222333478899999999999877665                 488888775

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.38  E-value=7e-10  Score=115.70  Aligned_cols=316  Identities=14%  Similarity=0.145  Sum_probs=162.4

Q ss_pred             eeEEEEEcCCCceeEEEeccCC---cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCc
Q 004971          249 TDIYIFLTRDGTQRVKIVENGG---WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTP  325 (721)
Q Consensus       249 ~~i~~~d~~~g~~~~l~~~~~~---~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (721)
                      ..|.++|.++.+........+.   ...+++||+.+|..  .+++.+.++++  ....       ...++ ..+.....+
T Consensus        16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~--~rdg~vsviD~--~~~~-------~v~~i-~~G~~~~~i   83 (369)
T PF02239_consen   16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVA--NRDGTVSVIDL--ATGK-------VVATI-KVGGNPRGI   83 (369)
T ss_dssp             TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEE--ETTSEEEEEET--TSSS-------EEEEE-E-SSEEEEE
T ss_pred             CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEE--cCCCeEEEEEC--Cccc-------EEEEE-ecCCCcceE
Confidence            6899999988876655443333   24789999966643  34676666543  2221       23333 334466789


Q ss_pred             eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC-----CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS-----PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~-----~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      ++|+ ||++++......+    .+.++|.++.+.........     ....+..+.-+|.....++...+.        .
T Consensus        84 ~~s~-DG~~~~v~n~~~~----~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~--------~  150 (369)
T PF02239_consen   84 AVSP-DGKYVYVANYEPG----TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT--------G  150 (369)
T ss_dssp             EE---TTTEEEEEEEETT----EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT--------T
T ss_pred             EEcC-CCCEEEEEecCCC----ceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC--------C
Confidence            9999 9999987654433    49999999887543221110     112233455677777655543332        4


Q ss_pred             eeEEEeccCCCCcc-eecc--cCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe-ecC-----ceeeEEcCCCC
Q 004971          401 QLLLENIKSPLPDI-SLFR--FDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY-FKN-----AFSTVWDPVRE  469 (721)
Q Consensus       401 ~l~~~~~~~~~~~~-~~~~--~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~-~~~-----~~~~~~spdg~  469 (721)
                      ++++.+........ ....  .......|+|||++++..  ....|.++|..+++...+. .+.     ...-...|..-
T Consensus       151 ~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g  230 (369)
T PF02239_consen  151 EIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFG  230 (369)
T ss_dssp             EEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTE
T ss_pred             eEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcc
Confidence            67888765442111 1111  112235899999988776  4678999999887755433 111     00101122222


Q ss_pred             eEEEEecCCCCCCCCCcEEEEEEEccC---CCCccceEEcccCCCCCcceEEccCCCEEEEEEee-CCceeEEEEECCCC
Q 004971          470 AVVYTSGGPEFASESSEVDIISINVDD---VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR-TGYKNLYIMDAEGG  545 (721)
Q Consensus       470 ~la~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~-~g~~~l~~~d~~~g  545 (721)
                      .+......     ....+-+.--+...   ......++.+...+.. ..+..+||+++|++.... .....|.++|.++-
T Consensus       231 ~vw~~~~~-----~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl  304 (369)
T PF02239_consen  231 PVWATSGL-----GYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL  304 (369)
T ss_dssp             EEEEEEBS-----SSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred             eEEeeccc-----cceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc
Confidence            22221100     00000111111100   0011234455544433 778889999999987211 12568999999987


Q ss_pred             cccceEECcCCCc-CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971          546 EGYGLHRLTEGPW-SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI  602 (721)
Q Consensus       546 ~~~~~~~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  602 (721)
                      +.  ...+..... ...++.|++||++++++..+.+     ..|.+||..+.+..+..
T Consensus       305 ~~--~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~-----~~i~v~D~~Tl~~~~~i  355 (369)
T PF02239_consen  305 KV--VKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN-----GAIVVYDAKTLKEKKRI  355 (369)
T ss_dssp             EE--EE-HHHHHT--EEEEEE-TTSSEEEEEEE--T-----TEEEEEETTTTEEEEEE
T ss_pred             ce--eEEEeccCCCcEeccEECCCCCEEEEEEecCC-----CEEEEEECCCcEEEEEE
Confidence            53  555553322 3578999999999999888741     18999999998766544

...

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.38  E-value=7.1e-11  Score=118.74  Aligned_cols=294  Identities=14%  Similarity=0.120  Sum_probs=178.6

Q ss_pred             eEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCc-----eEEeecccCCCCcccCcEEcCCCCEEEE
Q 004971          312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNK-----FIELTRFVSPKTHHLNPFISPDSSRVGY  386 (721)
Q Consensus       312 ~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~-----~~~l~~~~~~~~~~~~~~~Spdg~~l~~  386 (721)
                      ..++..+.-.+..+++.| .|.+++.     |+.+..+..||+..-.     .++|...+  ...+....||+.|..|+.
T Consensus       160 Ei~l~hgtk~Vsal~~Dp-~GaR~~s-----Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E--~h~i~sl~ys~Tg~~iLv  231 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDP-SGARFVS-----GSLDYTVKFWDFQGMDASMRSFRQLQPCE--THQINSLQYSVTGDQILV  231 (641)
T ss_pred             eEeccCCceEEEEeeecC-CCceeee-----ccccceEEEEecccccccchhhhccCccc--ccccceeeecCCCCeEEE
Confidence            445555555667888999 9988876     5567779999987432     22333222  233567899999999887


Q ss_pred             EEeeCCCC--CCCC-------cceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCc-eEEE
Q 004971          387 HKCRGGST--REDG-------NNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSN-RRQV  454 (721)
Q Consensus       387 ~~~~~~~~--~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~-~~~l  454 (721)
                      ++......  .+++       +...|+.++..-...    ........|+|+.+..+..  .++.+.+|++...+ ..++
T Consensus       232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGH----ia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV  307 (641)
T KOG0772|consen  232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGH----IAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV  307 (641)
T ss_pred             EecCcceeEEccCCceeeeeeccchhhhhhhccCCc----eeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE
Confidence            76544321  1111       011122222100000    0112235899998765554  48899999997544 2333


Q ss_pred             e--------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEE
Q 004971          455 Y--------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV  526 (721)
Q Consensus       455 ~--------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~  526 (721)
                      .        .-.+...+|+|||+.||..+       .++.+.+|.......-....++.-...+..+..+.||+||++|+
T Consensus       308 ik~k~~~g~Rv~~tsC~~nrdg~~iAagc-------~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll  380 (641)
T KOG0772|consen  308 IKTKPAGGKRVPVTSCAWNRDGKLIAAGC-------LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL  380 (641)
T ss_pred             EeeccCCCcccCceeeecCCCcchhhhcc-------cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh
Confidence            2        12466899999999998876       68999999974322100011111112224678899999999999


Q ss_pred             EEEeeCCceeEEEEECCCCcccceEECc--CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec
Q 004971          527 FRSTRTGYKNLYIMDAEGGEGYGLHRLT--EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS  604 (721)
Q Consensus       527 ~~s~~~g~~~l~~~d~~~g~~~~~~~l~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~  604 (721)
                      ..+.   +..|.+||+..-+. .+...+  ...+......||||.+.|+.+..-.+. .....|+.+|..+-....-...
T Consensus       381 SRg~---D~tLKvWDLrq~kk-pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~-~~~g~L~f~d~~t~d~v~ki~i  455 (641)
T KOG0772|consen  381 SRGF---DDTLKVWDLRQFKK-PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNG-MTAGTLFFFDRMTLDTVYKIDI  455 (641)
T ss_pred             hccC---CCceeeeecccccc-chhhhcCCCccCCCCccccCCCceEEEecccccCC-CCCceEEEEeccceeeEEEecC
Confidence            8776   88999999986442 111111  123344678999999877776553322 2334799999776544332222


Q ss_pred             CCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          605 GSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       605 ~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                       ....+....|.|-=..|...+.+++
T Consensus       456 -~~aSvv~~~WhpkLNQi~~gsgdG~  480 (641)
T KOG0772|consen  456 -STASVVRCLWHPKLNQIFAGSGDGT  480 (641)
T ss_pred             -CCceEEEEeecchhhheeeecCCCc
Confidence             3445667788887666666666654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.37  E-value=4.7e-11  Score=112.93  Aligned_cols=173  Identities=14%  Similarity=0.183  Sum_probs=114.0

Q ss_pred             eeeEEcCCCCeEEEEecCC---CCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCce
Q 004971          460 FSTVWDPVREAVVYTSGGP---EFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYK  535 (721)
Q Consensus       460 ~~~~~spdg~~la~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~  535 (721)
                      -.+.|+|+|+.|++.....   .-....+...||.++..+.    ....+.... +.+..++|+|+|+++++..... ..
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~----~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~-~~   83 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI----PVESIELKKEGPIHDVAWSPNGNEFAVIYGSM-PA   83 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC----ccceeeccCCCceEEEEECcCCCEEEEEEccC-Cc
Confidence            4567888888887766411   1111235678888877654    444444332 4588999999999998775422 34


Q ss_pred             eEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEE
Q 004971          536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF  615 (721)
Q Consensus       536 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~  615 (721)
                      .+.+||++...   +..+..  .....+.|||+|++|++++...    ....|.+||+...+.....   .......+.|
T Consensus        84 ~v~lyd~~~~~---i~~~~~--~~~n~i~wsP~G~~l~~~g~~n----~~G~l~~wd~~~~~~i~~~---~~~~~t~~~W  151 (194)
T PF08662_consen   84 KVTLYDVKGKK---IFSFGT--QPRNTISWSPDGRFLVLAGFGN----LNGDLEFWDVRKKKKISTF---EHSDATDVEW  151 (194)
T ss_pred             ccEEEcCcccE---eEeecC--CCceEEEECCCCCEEEEEEccC----CCcEEEEEECCCCEEeecc---ccCcEEEEEE
Confidence            89999997333   555543  3346799999999999988652    2347999999865443332   2334678999


Q ss_pred             CCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEE
Q 004971          616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR  660 (721)
Q Consensus       616 SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  660 (721)
                      ||||++|+.+.......           -...+.+|+..|..+.+
T Consensus       152 sPdGr~~~ta~t~~r~~-----------~dng~~Iw~~~G~~l~~  185 (194)
T PF08662_consen  152 SPDGRYLATATTSPRLR-----------VDNGFKIWSFQGRLLYK  185 (194)
T ss_pred             cCCCCEEEEEEecccee-----------ccccEEEEEecCeEeEe
Confidence            99999999877542211           11247888887775543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.36  E-value=6.4e-11  Score=126.52  Aligned_cols=195  Identities=17%  Similarity=0.076  Sum_probs=136.9

Q ss_pred             CCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe--ecCceeeEEcCCC-CeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          421 GSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVR-EAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg-~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      .-.+.||.++ +|... -+..+.+|++...+...++  ...++.++|.|-. ++++..+       -+++++||.+... 
T Consensus       372 ILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGS-------LD~KvRiWsI~d~-  442 (712)
T KOG0283|consen  372 ILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGS-------LDGKVRLWSISDK-  442 (712)
T ss_pred             heecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecc-------cccceEEeecCcC-
Confidence            3357999987 44444 5899999999988876666  7789999999954 4444443       6899999999753 


Q ss_pred             CCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC------CcCceeeEEccC-C
Q 004971          497 VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG------PWSDTMCNWSPD-G  569 (721)
Q Consensus       497 ~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~------~~~~~~~~~SpD-G  569 (721)
                           ++.....-...+..++|+|||+..++.+.   ++.+++|+..+-+...-..+...      ...++.+.|.|- -
T Consensus       443 -----~Vv~W~Dl~~lITAvcy~PdGk~avIGt~---~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~  514 (712)
T KOG0283|consen  443 -----KVVDWNDLRDLITAVCYSPDGKGAVIGTF---NGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDP  514 (712)
T ss_pred             -----eeEeehhhhhhheeEEeccCCceEEEEEe---ccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCC
Confidence                 44555555568889999999999999887   67777888776543212222111      124778888763 3


Q ss_pred             CEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCC-CCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccE
Q 004971          570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA-GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI  648 (721)
Q Consensus       570 ~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  648 (721)
                      ..|++++++.       +|.+||.....+......... .......|+.||++|+.++.+.                 .+
T Consensus       515 ~~vLVTSnDS-------rIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs-----------------~V  570 (712)
T KOG0283|consen  515 DEVLVTSNDS-------RIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS-----------------WV  570 (712)
T ss_pred             CeEEEecCCC-------ceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc-----------------eE
Confidence            3688888774       899999866554444332122 2335678999999999999655                 49


Q ss_pred             EEEEcCCC
Q 004971          649 FKIKLDGS  656 (721)
Q Consensus       649 ~~~d~~~~  656 (721)
                      |+|+.+..
T Consensus       571 YiW~~~~~  578 (712)
T KOG0283|consen  571 YIWKNDSF  578 (712)
T ss_pred             EEEeCCCC
Confidence            99997443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=7.9e-10  Score=112.37  Aligned_cols=323  Identities=16%  Similarity=0.220  Sum_probs=192.7

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcc----eEeecCCCCCccccccCCCCCEEEEEecCCC--CCCccc
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGL----TRRLTPYGVADFSPAVSPSGKYTAVASYGNK--GWDGEV  244 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~----~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~--~w~~~~  244 (721)
                      ||  -|.+|+....+|         ..||     ||+    .+++ .|+..... .|||..+||+.-+....  .|.   
T Consensus       219 SP--~GTYL~t~Hk~G---------I~lW-----GG~~f~r~~RF-~Hp~Vq~i-dfSP~EkYLVT~s~~p~~~~~~---  277 (698)
T KOG2314|consen  219 SP--KGTYLVTFHKQG---------IALW-----GGESFDRIQRF-YHPGVQFI-DFSPNEKYLVTYSPEPIIVEED---  277 (698)
T ss_pred             cC--CceEEEEEeccc---------eeee-----cCccHHHHHhc-cCCCceee-ecCCccceEEEecCCccccCcc---
Confidence            99  999888766553         3555     443    4455 67777777 89999999996443211  111   


Q ss_pred             ceeeeeEEEEEcCCCceeEEEec-cC---Ccc--eeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCC-
Q 004971          245 EMLSTDIYIFLTRDGTQRVKIVE-NG---GWP--CWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP-  317 (721)
Q Consensus       245 ~~~~~~i~~~d~~~g~~~~l~~~-~~---~~~--~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~-  317 (721)
                      ......|.+||+.+|...+-... .+   .+|  .||.|++.++ ++.  ...+.||....-          .+..... 
T Consensus       278 d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~A-rm~--~~sisIyEtpsf----------~lld~Ksl  344 (698)
T KOG2314|consen  278 DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFA-RMT--GNSISIYETPSF----------MLLDKKSL  344 (698)
T ss_pred             cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeE-Eec--cceEEEEecCce----------eeeccccc
Confidence            11247899999999987765422 12   244  8999977544 333  245566632211          0100000 


Q ss_pred             CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCC
Q 004971          318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRED  397 (721)
Q Consensus       318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~  397 (721)
                      .-..+....||| .+..|||-+........++-++.+.+++......+  .......+-|-.+|++|.+-..+-..    
T Consensus       345 ki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nl--fnVsDckLhWQk~gdyLcvkvdR~tK----  417 (698)
T KOG2314|consen  345 KISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNL--FNVSDCKLHWQKSGDYLCVKVDRHTK----  417 (698)
T ss_pred             CCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccc--eeeeccEEEeccCCcEEEEEEEeecc----
Confidence            112457889999 99999997665555556678888877763332221  22333345677777777664332220    


Q ss_pred             CcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCc--eEEEe-ecCceeeEEcCCCCeEEEE
Q 004971          398 GNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSN--RRQVY-FKNAFSTVWDPVREAVVYT  474 (721)
Q Consensus       398 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~--~~~l~-~~~~~~~~~spdg~~la~~  474 (721)
                                 .+..           -.++            .+-++.+....  ...+. ...+..++|-|.|.++++.
T Consensus       418 -----------~~~~-----------g~f~------------n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi  463 (698)
T KOG2314|consen  418 -----------SKVK-----------GQFS------------NLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVI  463 (698)
T ss_pred             -----------cccc-----------ceEe------------eEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEE
Confidence                       0000           0111            12222222211  11222 4677899999999999998


Q ss_pred             ecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC
Q 004971          475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL  553 (721)
Q Consensus       475 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l  553 (721)
                      +..    ....++.+|.+.....    ....+..-+ .....+.|||.|++++++...+....|+.+|.+-...+ ....
T Consensus       464 ~g~----~~k~tvsfY~~e~~~~----~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k-~~~~  534 (698)
T KOG2314|consen  464 SGN----TVKNTVSFYAVETNIK----KPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLK-DTAS  534 (698)
T ss_pred             Ecc----ccccceeEEEeecCCC----chhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhh-hccC
Confidence            743    2367888998886443    333332222 45667899999999999987766778999998743311 1112


Q ss_pred             cCCCcCceeeEEccCCCEEEEEEcc
Q 004971          554 TEGPWSDTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       554 ~~~~~~~~~~~~SpDG~~l~~~~~~  578 (721)
                      ..+ ...+.+.|.|.|++++.++.-
T Consensus       535 ~eh-~~at~veWDPtGRYvvT~ss~  558 (698)
T KOG2314|consen  535 PEH-FAATEVEWDPTGRYVVTSSSS  558 (698)
T ss_pred             ccc-cccccceECCCCCEEEEeeeh
Confidence            222 234678999999999887753

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=5.6e-09  Score=111.79  Aligned_cols=436  Identities=10%  Similarity=0.125  Sum_probs=251.8

Q ss_pred             eeEEeccCCCCCCCCceeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeecC-CceeE
Q 004971           44 FDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNG-TSNIY  122 (721)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~  122 (721)
                      -.+|.+....     ...+.-.|.+++.+..|.|++-                             +|++.-|. ..+||
T Consensus        33 IQlWDYRM~t-----li~rFdeHdGpVRgv~FH~~qp-----------------------------lFVSGGDDykIkVW   78 (1202)
T KOG0292|consen   33 IQLWDYRMGT-----LIDRFDEHDGPVRGVDFHPTQP-----------------------------LFVSGGDDYKIKVW   78 (1202)
T ss_pred             eeeehhhhhh-----HHhhhhccCCccceeeecCCCC-----------------------------eEEecCCccEEEEE
Confidence            4688885522     2455678999999999999864                             66665443 67899


Q ss_pred             EeeeecCcccccccchhhh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccceEEEE
Q 004971          123 YDAVYYDTRRNTRSRTALE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYST  201 (721)
Q Consensus       123 ~~~~~~g~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v  201 (721)
                      .+.         .+|-..| .++   .+.|.  .+       .|     ++  .=-+|+-++++..        .+||..
T Consensus        79 nYk---------~rrclftL~GH---lDYVR--t~-------~F-----Hh--eyPWIlSASDDQT--------IrIWNw  122 (1202)
T KOG0292|consen   79 NYK---------TRRCLFTLLGH---LDYVR--TV-------FF-----HH--EYPWILSASDDQT--------IRIWNW  122 (1202)
T ss_pred             ecc---------cceehhhhccc---cceeE--Ee-------ec-----cC--CCceEEEccCCCe--------EEEEec
Confidence            986         2331122 221   22222  11       34     55  3446777666632        467766


Q ss_pred             eCCCc-ceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCcee------------------
Q 004971          202 ELKTG-LTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQR------------------  262 (721)
Q Consensus       202 ~~~~g-~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~------------------  262 (721)
                      .  ++ ...-||.|.+......|.|....|+.++-+            ..|.+||..+-..+                  
T Consensus       123 q--sr~~iavltGHnHYVMcAqFhptEDlIVSaSLD------------QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~  188 (1202)
T KOG0292|consen  123 Q--SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLD------------QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNS  188 (1202)
T ss_pred             c--CCceEEEEecCceEEEeeccCCccceEEEeccc------------ceEEEEeecchhccCCCCCCchhhhhccccch
Confidence            4  44 345688999888888999988899987744            34666665332111                  


Q ss_pred             -----------EEEeccC---CcceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceee
Q 004971          263 -----------VKIVENG---GWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATS  328 (721)
Q Consensus       263 -----------~l~~~~~---~~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  328 (721)
                                 .+.....   ++.+|.|.--++++  ..+|..+.+|++.....+       +....-+|-..+..+-|.
T Consensus       189 dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS--G~DDRqVKlWrmnetKaW-------EvDtcrgH~nnVssvlfh  259 (1202)
T KOG0292|consen  189 DLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS--GADDRQVKLWRMNETKAW-------EVDTCRGHYNNVSSVLFH  259 (1202)
T ss_pred             hhcCCcCeeeeeeecccccccceEEecCCcceEEe--cCCcceeeEEEeccccce-------eehhhhcccCCcceEEec
Confidence                       1111111   14466665445552  333788899988766644       333334555577888999


Q ss_pred             cCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEecc
Q 004971          329 PGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK  408 (721)
Q Consensus       329 p~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  408 (721)
                      | ..+.|+.     .+++..|++||+...+..+..  .......+.++..|..+.++. ..+.+       ..++...  
T Consensus       260 p-~q~lIlS-----nsEDksirVwDm~kRt~v~tf--rrendRFW~laahP~lNLfAA-gHDsG-------m~VFkle--  321 (1202)
T KOG0292|consen  260 P-HQDLILS-----NSEDKSIRVWDMTKRTSVQTF--RRENDRFWILAAHPELNLFAA-GHDSG-------MIVFKLE--  321 (1202)
T ss_pred             C-ccceeEe-----cCCCccEEEEecccccceeee--eccCCeEEEEEecCCcceeee-ecCCc-------eEEEEEc--
Confidence            8 8776665     235677999999876643332  222444555666776665443 33333       2222221  


Q ss_pred             CCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe----e----cCceeeEEcCCCCeEEEEecCCCC
Q 004971          409 SPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY----F----KNAFSTVWDPVREAVVYTSGGPEF  480 (721)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~----~----~~~~~~~~spdg~~la~~~~~~~~  480 (721)
                                  -..+++.-.+..|.|+.+..|+.+|+.+.+-..+.    .    ....++.++|....+.++++    
T Consensus       322 ------------RErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~----  385 (1202)
T KOG0292|consen  322 ------------RERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSN----  385 (1202)
T ss_pred             ------------ccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEec----
Confidence                        11234434466799998999999999875533332    1    34567899998888888764    


Q ss_pred             CCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCc
Q 004971          481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD  560 (721)
Q Consensus       481 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~  560 (721)
                       .+.+...++.+..+.... .........  .-....|-.-+++.++...   ..++.+-++.+..   .+.+... ...
T Consensus       386 -~~n~~y~L~~ipk~~~~~-~~~~~~~k~--tG~~a~fvarNrfavl~k~---~~~v~ik~l~N~v---tkkl~~~-~~~  454 (1202)
T KOG0292|consen  386 -LDNGEYELVQIPKDSDGV-SDGKDVKKG--TGEGALFVARNRFAVLDKS---NEQVVIKNLKNKV---TKKLLLP-EST  454 (1202)
T ss_pred             -cCCCeEEEEEecCccccc-CCchhhhcC--CCCceEEEEecceEEEEec---CcceEEecccchh---hhcccCc-ccc
Confidence             356788888887653200 010111111  1122334444444444433   3455555665443   2333221 112


Q ss_pred             eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      ..+-+.-+|..| ..+.+        .|-++|+..++..--.   .-..+..+.||+|+.++++.+...
T Consensus       455 ~~IF~ag~g~ll-l~~~~--------~v~lfdvQq~~~~~si---~~s~vkyvvws~dm~~vAll~Kh~  511 (1202)
T KOG0292|consen  455 DDIFYAGTGNLL-LRSPD--------SVTLFDVQQKKKVGSI---KVSKVKYVVWSNDMSRVALLSKHT  511 (1202)
T ss_pred             cceeeccCccEE-EEcCC--------eEEEEEeecceEEEEE---ecCceeEEEEcCccchhhhcccce
Confidence            345555566533 33333        6888998776543332   234567789999999988877653

>PTZ00420 coronin; Provisional

Probab=99.34  E-value=8.6e-10  Score=119.70  Aligned_cols=218  Identities=13%  Similarity=0.052  Sum_probs=143.4

Q ss_pred             CCCceeCcC-CCEEEEEe-CCcEEEEECCCCce---------EEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcE
Q 004971          421 GSFPSFSPK-GDRIAFVE-FPGVYVVNSDGSNR---------RQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEV  487 (721)
Q Consensus       421 ~~~~~~SpD-G~~la~~~-~~~l~v~d~~~g~~---------~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  487 (721)
                      ...++|+|+ +..|+..+ ++.|.+|++..+..         ..+.  ...+..+.|+|++..+++++      ..++.+
T Consensus        77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg------S~DgtI  150 (568)
T PTZ00420         77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS------GFDSFV  150 (568)
T ss_pred             EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE------eCCCeE
Confidence            345799997 67777774 88999999975421         1222  45678999999998876544      257899


Q ss_pred             EEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCc-----ee
Q 004971          488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD-----TM  562 (721)
Q Consensus       488 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~-----~~  562 (721)
                      .||++....     ....+. +...+..++|+|||+.|+..+.   +..|.+||+.+++.  +..+..+.+..     ..
T Consensus       151 rIWDl~tg~-----~~~~i~-~~~~V~SlswspdG~lLat~s~---D~~IrIwD~Rsg~~--i~tl~gH~g~~~s~~v~~  219 (568)
T PTZ00420        151 NIWDIENEK-----RAFQIN-MPKKLSSLKWNIKGNLLSGTCV---GKHMHIIDPRKQEI--ASSFHIHDGGKNTKNIWI  219 (568)
T ss_pred             EEEECCCCc-----EEEEEe-cCCcEEEEEECCCCCEEEEEec---CCEEEEEECCCCcE--EEEEecccCCceeEEEEe
Confidence            999986543     333343 3346788999999999988775   67899999998875  44554444322     12


Q ss_pred             eEEccCCCEEEEEEccCCCCCCceeEEEEecCC-CceEEeeecCCCCCcCCeEECCC-CCEEEEEEecCCCcCCCCCCCC
Q 004971          563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG-TGLRKLIQSGSAGRANHPYFSPD-GKSIVFTSDYGGISAEPISTPH  640 (721)
Q Consensus       563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~-~~~~~l~~~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~~~~~~~  640 (721)
                      ..|++|+++|+.++.+.   ...+.|.+||+.. +++............-.+.|.++ |.+++....+.           
T Consensus       220 ~~fs~d~~~IlTtG~d~---~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~-----------  285 (568)
T PTZ00420        220 DGLGGDDNYILSTGFSK---NNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG-----------  285 (568)
T ss_pred             eeEcCCCCEEEEEEcCC---CCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC-----------
Confidence            24579999998877653   2335799999984 44433322111112223455555 66555544444           


Q ss_pred             CCCCCccEEEEEcCCCCeEEeccCCC--CCCCceecC
Q 004971          641 QYQPYGEIFKIKLDGSDLKRLTQNSF--EDGTPAWGP  675 (721)
Q Consensus       641 ~~~~~~~l~~~d~~~~~~~~lt~~~~--~~~~~~~sp  675 (721)
                            .|++|++..+....|..+..  .....+|.|
T Consensus       286 ------tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~P  316 (568)
T PTZ00420        286 ------NCRYYQHSLGSIRKVNEYKSCSPFRSFGFLP  316 (568)
T ss_pred             ------eEEEEEccCCcEEeecccccCCCccceEEcc
Confidence                  39999998888888876432  235678888

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.34  E-value=2.7e-10  Score=118.75  Aligned_cols=283  Identities=16%  Similarity=0.167  Sum_probs=152.3

Q ss_pred             EEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-c
Q 004971          335 IAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-D  413 (721)
Q Consensus       335 la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~  413 (721)
                      |+++..+   ....|.++|.++.+...  .............++|||++++..+.+         ..+.+.|+.+... .
T Consensus         7 l~~V~~~---~~~~v~viD~~t~~~~~--~i~~~~~~h~~~~~s~Dgr~~yv~~rd---------g~vsviD~~~~~~v~   72 (369)
T PF02239_consen    7 LFYVVER---GSGSVAVIDGATNKVVA--RIPTGGAPHAGLKFSPDGRYLYVANRD---------GTVSVIDLATGKVVA   72 (369)
T ss_dssp             EEEEEEG---GGTEEEEEETTT-SEEE--EEE-STTEEEEEE-TT-SSEEEEEETT---------SEEEEEETTSSSEEE
T ss_pred             EEEEEec---CCCEEEEEECCCCeEEE--EEcCCCCceeEEEecCCCCEEEEEcCC---------CeEEEEECCcccEEE
Confidence            4444443   33459999999887432  222212224457899999998886532         2467777765521 1


Q ss_pred             ceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceE-EEee---------cCceeeEEcCCCCeEEEEecCCCCC
Q 004971          414 ISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRR-QVYF---------KNAFSTVWDPVREAVVYTSGGPEFA  481 (721)
Q Consensus       414 ~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~-~l~~---------~~~~~~~~spdg~~la~~~~~~~~~  481 (721)
                      ..........+++|+||++++..  ..+.+.++|..+.++. .+..         ..+..+.-+|....+++...     
T Consensus        73 ~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk-----  147 (369)
T PF02239_consen   73 TIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK-----  147 (369)
T ss_dssp             EEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET-----
T ss_pred             EEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc-----
Confidence            11122334567999999999887  4789999999887754 4431         12345667888886666542     


Q ss_pred             CCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc-------------
Q 004971          482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY-------------  548 (721)
Q Consensus       482 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~-------------  548 (721)
                         ..-+||.++.... .....+.+. .........|+|||++++.+.+.  ...|-++|..+++..             
T Consensus       148 ---d~~~I~vVdy~d~-~~~~~~~i~-~g~~~~D~~~dpdgry~~va~~~--sn~i~viD~~~~k~v~~i~~g~~p~~~~  220 (369)
T PF02239_consen  148 ---DTGEIWVVDYSDP-KNLKVTTIK-VGRFPHDGGFDPDGRYFLVAANG--SNKIAVIDTKTGKLVALIDTGKKPHPGP  220 (369)
T ss_dssp             ---TTTEEEEEETTTS-SCEEEEEEE---TTEEEEEE-TTSSEEEEEEGG--GTEEEEEETTTTEEEEEEE-SSSBEETT
T ss_pred             ---cCCeEEEEEeccc-cccceeeec-ccccccccccCcccceeeecccc--cceeEEEeeccceEEEEeeccccccccc
Confidence               2346666665432 001122222 23355678999999999886543  224444444433210             


Q ss_pred             ----------------------------------------ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeE
Q 004971          549 ----------------------------------------GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM  588 (721)
Q Consensus       549 ----------------------------------------~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i  588 (721)
                                                              .++++..... ...+..+||+++|++...-.   .....|
T Consensus       221 ~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~-glFi~thP~s~~vwvd~~~~---~~~~~v  296 (369)
T PF02239_consen  221 GANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGG-GLFIKTHPDSRYVWVDTFLN---PDADTV  296 (369)
T ss_dssp             EEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSS-S--EE--TT-SEEEEE-TT----SSHT-E
T ss_pred             cccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCC-cceeecCCCCccEEeeccCC---CCCceE
Confidence                                                    0111111111 13456699999998873222   134589


Q ss_pred             EEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EEec
Q 004971          589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLT  662 (721)
Q Consensus       589 ~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt  662 (721)
                      .++|..+-+...-..........++.|++||++++++..+.+.               .|.++|.++.++ ++|+
T Consensus       297 ~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~---------------~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  297 QVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNG---------------AIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TT---------------EEEEEETTTTEEEEEEE
T ss_pred             EEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCC---------------EEEEEECCCcEEEEEEE
Confidence            9999988754433222122347789999999999887776542               499999988765 4665

...

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.34  E-value=5.5e-09  Score=111.37  Aligned_cols=217  Identities=14%  Similarity=0.116  Sum_probs=136.0

Q ss_pred             CeeeEEEEECCCCce--EEeec--ccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce-----
Q 004971          345 SYRHIELFDLVKNKF--IELTR--FVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS-----  415 (721)
Q Consensus       345 ~~~~l~l~dl~tg~~--~~l~~--~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----  415 (721)
                      ++..++.|+......  ..+..  +.........++.|+.|+..+.....+.         |-+.++.++...-.     
T Consensus       420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~---------Id~fNmQSGi~r~sf~~~~  490 (910)
T KOG1539|consen  420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGT---------IDRFNMQSGIHRKSFGDSP  490 (910)
T ss_pred             CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCe---------EEEEEcccCeeecccccCc
Confidence            345577888765432  11111  1112345667888999987766544443         44445555432111     


Q ss_pred             ecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceE-EEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971          416 LFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRR-QVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI  492 (721)
Q Consensus       416 ~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~-~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~  492 (721)
                      ........++...-++.++.+ ..+-+..||...+... .+. ...+..+.++.....++...       ++-.+.++++
T Consensus       491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~-------ddf~I~vvD~  563 (910)
T KOG1539|consen  491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL-------DDFSIRVVDV  563 (910)
T ss_pred             cccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc-------CceeEEEEEc
Confidence            111222223333333445555 4778899999877632 222 34555666666666666654       3455666665


Q ss_pred             EccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEE
Q 004971          493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWI  572 (721)
Q Consensus       493 ~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l  572 (721)
                      ....     .++.+..+...+..+.||||||||+.++.   +..|++||+.++..  +..+. -......+.|||+|.+|
T Consensus       564 ~t~k-----vvR~f~gh~nritd~~FS~DgrWlisasm---D~tIr~wDlpt~~l--ID~~~-vd~~~~sls~SPngD~L  632 (910)
T KOG1539|consen  564 VTRK-----VVREFWGHGNRITDMTFSPDGRWLISASM---DSTIRTWDLPTGTL--IDGLL-VDSPCTSLSFSPNGDFL  632 (910)
T ss_pred             hhhh-----hhHHhhccccceeeeEeCCCCcEEEEeec---CCcEEEEeccCcce--eeeEe-cCCcceeeEECCCCCEE
Confidence            4432     45667777888999999999999999998   88999999999884  33332 23345789999999999


Q ss_pred             EEEEccCCCCCCceeEEEEecC
Q 004971          573 AFASDRDNPGSGSFEMYLIHPN  594 (721)
Q Consensus       573 ~~~~~~~~~~~~~~~i~~~d~~  594 (721)
                      |....+.      ..||+|.-.
T Consensus       633 AT~Hvd~------~gIylWsNk  648 (910)
T KOG1539|consen  633 ATVHVDQ------NGIYLWSNK  648 (910)
T ss_pred             EEEEecC------ceEEEEEch
Confidence            9999775      479999743

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.33  E-value=4.2e-11  Score=131.18  Aligned_cols=222  Identities=18%  Similarity=0.126  Sum_probs=158.6

Q ss_pred             CceeCcCCCEEEEEe---CCcEEEEECCCC----------ceEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCC
Q 004971          423 FPSFSPKGDRIAFVE---FPGVYVVNSDGS----------NRRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASES  484 (721)
Q Consensus       423 ~~~~SpDG~~la~~~---~~~l~v~d~~~g----------~~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~  484 (721)
                      .+..+|||.+++..+   ++.+.+|+.+.=          .+..+.     .+.+..+.|||||++||+.+       ++
T Consensus        18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS-------DD   90 (942)
T KOG0973|consen   18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS-------DD   90 (942)
T ss_pred             EEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc-------Cc
Confidence            357788988877763   445556664421          011222     45677899999999999997       56


Q ss_pred             CcEEEEEEEccCC-------------CCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE
Q 004971          485 SEVDIISINVDDV-------------DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH  551 (721)
Q Consensus       485 ~~~~i~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~  551 (721)
                      .-+.||.....+.             ........+..|...+..+.|+||+.+|+..+.   +..|.+|+..+.+.  ++
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~---DnsViiwn~~tF~~--~~  165 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSL---DNSVIIWNAKTFEL--LK  165 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecc---cceEEEEcccccee--ee
Confidence            7788898873110             011244556677788889999999999999988   88999999998764  77


Q ss_pred             ECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC-----CCCCcCCeEECCCCCEEEEEE
Q 004971          552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG-----SAGRANHPYFSPDGKSIVFTS  626 (721)
Q Consensus       552 ~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-----~~~~~~~~~~SpDG~~l~~~~  626 (721)
                      .+..+..-+-.++|.|-|++|+..+++.       .|.+|....-...+.+...     ....+..+.|||||++|+...
T Consensus       166 vl~~H~s~VKGvs~DP~Gky~ASqsdDr-------tikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  166 VLRGHQSLVKGVSWDPIGKYFASQSDDR-------TLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN  238 (942)
T ss_pred             eeecccccccceEECCccCeeeeecCCc-------eEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence            7777877788999999999999999885       8999997654444433221     223456789999999998765


Q ss_pred             ecCCCcCCCCCCCCCCCCCccEEEEEcCCCC-eEEeccCCCCCCCceecCC
Q 004971          627 DYGGISAEPISTPHQYQPYGEIFKIKLDGSD-LKRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       627 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~lt~~~~~~~~~~~sp~  676 (721)
                      .-++.             .+-+-+++.++-+ ...|-.|.....-..|.|.
T Consensus       239 A~n~~-------------~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~  276 (942)
T KOG0973|consen  239 AVNGG-------------KSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK  276 (942)
T ss_pred             hccCC-------------cceeEEEecCCceeeeeeecCCCceEEEEeChH
Confidence            53321             1247777776655 4577777777777888884

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=2.9e-10  Score=122.27  Aligned_cols=260  Identities=15%  Similarity=0.121  Sum_probs=175.5

Q ss_pred             ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCc--eEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971          322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNK--FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN  399 (721)
Q Consensus       322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~--~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~  399 (721)
                      ...+++.| +|++|+...     .++.|.+|+.-+..  +..+..   .+..+  ..+.-++.+++..+.++.       
T Consensus        16 ~t~i~~d~-~gefi~tcg-----sdg~ir~~~~~sd~e~P~ti~~---~g~~v--~~ia~~s~~f~~~s~~~t-------   77 (933)
T KOG1274|consen   16 LTLICYDP-DGEFICTCG-----SDGDIRKWKTNSDEEEPETIDI---SGELV--SSIACYSNHFLTGSEQNT-------   77 (933)
T ss_pred             eEEEEEcC-CCCEEEEec-----CCCceEEeecCCcccCCchhhc---cCcee--EEEeecccceEEeeccce-------
Confidence            46789999 999776632     34458888765442  111110   11112  334445667777666655       


Q ss_pred             ceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceE-EEe--ecCceeeEEcCCCCeEEE
Q 004971          400 NQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRR-QVY--FKNAFSTVWDPVREAVVY  473 (721)
Q Consensus       400 ~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~-~l~--~~~~~~~~~spdg~~la~  473 (721)
                        +.++.+..+..  -+..+....+.++++.+|+++|+.+ +..|.+++....... .+.  .+.+..+.|+|.+..||+
T Consensus        78 --v~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAv  155 (933)
T KOG1274|consen   78 --VLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAV  155 (933)
T ss_pred             --EEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEE
Confidence              44555554422  3444445567789999999999985 778899998765543 333  678899999999999999


Q ss_pred             EecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC--------CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCC
Q 004971          474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN--------GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG  545 (721)
Q Consensus       474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g  545 (721)
                      .+       -++.+.||.++...     ....++.-        ......++|+|+|..+++...   +..+.+|+.++.
T Consensus       156 ss-------~dG~v~iw~~~~~~-----~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~---d~~Vkvy~r~~w  220 (933)
T KOG1274|consen  156 SS-------CDGKVQIWDLQDGI-----LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV---DNTVKVYSRKGW  220 (933)
T ss_pred             Ee-------cCceEEEEEcccch-----hhhhcccCCccccccccceeeeeeecCCCCeEEeecc---CCeEEEEccCCc
Confidence            86       57999999998543     22222221        123456899999777777766   678999999988


Q ss_pred             cccceEECcCC--CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEE
Q 004971          546 EGYGLHRLTEG--PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV  623 (721)
Q Consensus       546 ~~~~~~~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~  623 (721)
                      +.  ...+...  ......++|||.|++||....++       .|.+||+++-+. ..    ....+...+|-|++..|-
T Consensus       221 e~--~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g-------~I~vWnv~t~~~-~~----~~~~Vc~~aw~p~~n~it  286 (933)
T KOG1274|consen  221 EL--QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG-------QILVWNVDTHER-HE----FKRAVCCEAWKPNANAIT  286 (933)
T ss_pred             ee--heeecccccccceEEEEEcCCCcEEeeeccCC-------cEEEEecccchh-cc----ccceeEEEecCCCCCeeE
Confidence            75  3333322  22257899999999999999886       899999987322 11    334677889999988887


Q ss_pred             EEEecCC
Q 004971          624 FTSDYGG  630 (721)
Q Consensus       624 ~~~~~~~  630 (721)
                      +......
T Consensus       287 ~~~~~g~  293 (933)
T KOG1274|consen  287 LITALGT  293 (933)
T ss_pred             EEeeccc
Confidence            6665543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.32  E-value=2.1e-11  Score=119.38  Aligned_cols=274  Identities=15%  Similarity=0.093  Sum_probs=181.1

Q ss_pred             eCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971          315 VTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST  394 (721)
Q Consensus       315 ~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~  394 (721)
                      +..+...++.+.|-+ +...++.     ++.+..|.+|+...++...+..+.+..+.+....+.+++++++..+.++.  
T Consensus       171 ld~h~gev~~v~~l~-~sdtlat-----gg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~--  242 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLR-NSDTLAT-----GGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKN--  242 (459)
T ss_pred             hhccccccceeEEcc-Ccchhhh-----cchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCc--
Confidence            334455667788887 7666665     44566799999987775555556666677888999999999988777766  


Q ss_pred             CCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceE-EEe-ecCceeeEEcCCCCeE
Q 004971          395 REDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRR-QVY-FKNAFSTVWDPVREAV  471 (721)
Q Consensus       395 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~-~l~-~~~~~~~~~spdg~~l  471 (721)
                           .++|-.+-......+.........+.|.-...+++.. .+..|..||+..+... .+. ...+.++..+    ..
T Consensus       243 -----~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~----~~  313 (459)
T KOG0288|consen  243 -----LRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS----IS  313 (459)
T ss_pred             -----eeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec----ce
Confidence                 3344333211122233222233334444444443333 3677889998776532 222 3344444444    12


Q ss_pred             EEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE
Q 004971          472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH  551 (721)
Q Consensus       472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~  551 (721)
                      .+.+.     -.+.++++|++....     ....+..+ +.+.++..++||..|...+.   +..|-++|+.+.+   +.
T Consensus       314 ~~~Sg-----H~DkkvRfwD~Rs~~-----~~~sv~~g-g~vtSl~ls~~g~~lLsssR---Ddtl~viDlRt~e---I~  376 (459)
T KOG0288|consen  314 DVISG-----HFDKKVRFWDIRSAD-----KTRSVPLG-GRVTSLDLSMDGLELLSSSR---DDTLKVIDLRTKE---IR  376 (459)
T ss_pred             eeeec-----ccccceEEEeccCCc-----eeeEeecC-cceeeEeeccCCeEEeeecC---CCceeeeeccccc---EE
Confidence            22222     136779999976643     33444444 48889999999999988765   6789999999887   44


Q ss_pred             ECcCC-----CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCC-CcCCeEECCCCCEEEEE
Q 004971          552 RLTEG-----PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG-RANHPYFSPDGKSIVFT  625 (721)
Q Consensus       552 ~l~~~-----~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~-~~~~~~~SpDG~~l~~~  625 (721)
                      .....     ..+.+...||||+++++.++.++       .||+|++.++++.......+.. .+..++|+|-|+.|+.+
T Consensus       377 ~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg-------sv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa  449 (459)
T KOG0288|consen  377 QTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG-------SVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA  449 (459)
T ss_pred             EEeeccccccccccceeEECCCCceeeeccCCC-------cEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence            43321     22356789999999999999886       8999999999988776543333 58899999999999876


Q ss_pred             EecC
Q 004971          626 SDYG  629 (721)
Q Consensus       626 ~~~~  629 (721)
                      +...
T Consensus       450 dk~~  453 (459)
T KOG0288|consen  450 DKQK  453 (459)
T ss_pred             cCCc
Confidence            6644

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.30  E-value=1.7e-10  Score=108.86  Aligned_cols=281  Identities=12%  Similarity=0.111  Sum_probs=194.9

Q ss_pred             ceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCC------------Cce----EEeecccCCCCcccC
Q 004971          311 SIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVK------------NKF----IELTRFVSPKTHHLN  374 (721)
Q Consensus       311 ~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~t------------g~~----~~l~~~~~~~~~~~~  374 (721)
                      +...++.+...++..+||| ||..++.     |+.+..|.++|++.            |..    -.+..+.+|...+..
T Consensus       104 Et~ylt~HK~~cR~aafs~-DG~lvAT-----GsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~  177 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSP-DGSLVAT-----GSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVND  177 (430)
T ss_pred             ceEEEeecccceeeeeeCC-CCcEEEc-----cCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccc
Confidence            3445666766778889999 9998877     56777899999871            110    122334455666788


Q ss_pred             cEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC-CC---cceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCC
Q 004971          375 PFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP-LP---DISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGS  449 (721)
Q Consensus       375 ~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~---~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g  449 (721)
                      +.|.|....|+..+.++.         +-+.++... .+   .+.......+.+.|+|.|.+|++. ....+.+||+++-
T Consensus       178 l~FHPre~ILiS~srD~t---------vKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~  248 (430)
T KOG0640|consen  178 LDFHPRETILISGSRDNT---------VKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY  248 (430)
T ss_pred             eeecchhheEEeccCCCe---------EEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccce
Confidence            899999988887666655         333343221 11   112223345678999999999888 4778999999876


Q ss_pred             ceEEEe------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-CC-CCCcceEEccC
Q 004971          450 NRRQVY------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-NG-KNNAFPSVSPD  521 (721)
Q Consensus       450 ~~~~l~------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~SpD  521 (721)
                      +.-.-.      .+.+..+.+|+.|+..+..+       .++.++||+--.+.     .++.+.. ++ ..+.+..|+.+
T Consensus       249 QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-------kDG~IklwDGVS~r-----Cv~t~~~AH~gsevcSa~Ftkn  316 (430)
T KOG0640|consen  249 QCFVSANPDDQHTGAITQVRYSSTGSLYVTAS-------KDGAIKLWDGVSNR-----CVRTIGNAHGGSEVCSAVFTKN  316 (430)
T ss_pred             eEeeecCcccccccceeEEEecCCccEEEEec-------cCCcEEeeccccHH-----HHHHHHhhcCCceeeeEEEccC
Confidence            532211      45788999999998766665       68999999854432     3444433 22 45677899999


Q ss_pred             CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCC-----cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971          522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP-----WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       522 g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~-----~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                      ||+|+....   +..+++|.+.+|+.  +...+...     .......|.-...+++|-....      ..+..||..++
T Consensus       317 ~kyiLsSG~---DS~vkLWEi~t~R~--l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas------~slcsWdaRta  385 (430)
T KOG0640|consen  317 GKYILSSGK---DSTVKLWEISTGRM--LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS------NSLCSWDARTA  385 (430)
T ss_pred             CeEEeecCC---cceeeeeeecCCce--EEEEecCCcccchhhhhhhhhcCccceEEcccccc------Cceeeccccch
Confidence            999997776   77899999999985  55444321     1124567777777777766543      37999999888


Q ss_pred             ceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       597 ~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      ..+.+...+|.+.+..+.-||.+--++..+.+-
T Consensus       386 dr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~  418 (430)
T KOG0640|consen  386 DRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF  418 (430)
T ss_pred             hhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence            777777777888888999999998777666654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.29  E-value=1.1e-10  Score=116.90  Aligned_cols=267  Identities=13%  Similarity=0.083  Sum_probs=184.9

Q ss_pred             CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceE-Eee--cccCCCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971          317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFI-ELT--RFVSPKTHHLNPFISPDSSRVGYHKCRGGS  393 (721)
Q Consensus       317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~-~l~--~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~  393 (721)
                      .++..+..+.+|. ..++++.  ..    .+.|.+||+.....+ .+.  .....+..++...++|||+.|++..+.   
T Consensus       417 ~HGEvVcAvtIS~-~trhVyT--gG----kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea---  486 (705)
T KOG0639|consen  417 AHGEVVCAVTISN-PTRHVYT--GG----KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA---  486 (705)
T ss_pred             ccCcEEEEEEecC-CcceeEe--cC----CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc---
Confidence            4455566677777 7777765  22    344999999643211 111  112235567889999999999986653   


Q ss_pred             CCCCCcceeEEEeccCCCCcceec----ccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCce-EEEe--ecCceeeEE
Q 004971          394 TREDGNNQLLLENIKSPLPDISLF----RFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNR-RQVY--FKNAFSTVW  464 (721)
Q Consensus       394 ~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~-~~l~--~~~~~~~~~  464 (721)
                            ..+-++|+..+...+...    ...-..++.|||.+ ++|.  +++.|.+||+..... +++.  ......+..
T Consensus       487 ------stlsiWDLAapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi  559 (705)
T KOG0639|consen  487 ------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI  559 (705)
T ss_pred             ------ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe
Confidence                  347778887764433221    11223578899985 5555  699999999988764 4444  567889999


Q ss_pred             cCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEEC
Q 004971          465 DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA  542 (721)
Q Consensus       465 spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~  542 (721)
                      |+||.+|....       -++.++.|++...        +++..++  ..+..+..+|.+.||++.-.   +.++++...
T Consensus       560 s~dGtklWTGG-------lDntvRcWDlreg--------rqlqqhdF~SQIfSLg~cP~~dWlavGMe---ns~vevlh~  621 (705)
T KOG0639|consen  560 SKDGTKLWTGG-------LDNTVRCWDLREG--------RQLQQHDFSSQIFSLGYCPTGDWLAVGME---NSNVEVLHT  621 (705)
T ss_pred             cCCCceeecCC-------Cccceeehhhhhh--------hhhhhhhhhhhheecccCCCccceeeecc---cCcEEEEec
Confidence            99999998764       5788999988643        3444444  46778899999999999887   778888888


Q ss_pred             CCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEE
Q 004971          543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI  622 (721)
Q Consensus       543 ~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l  622 (721)
                      .+.+   --++..+..-+-++.|++-|+|++.+..+.       -|-.|..--|..  ++.......+.+...|-|.++|
T Consensus       622 skp~---kyqlhlheScVLSlKFa~cGkwfvStGkDn-------lLnawrtPyGas--iFqskE~SsVlsCDIS~ddkyI  689 (705)
T KOG0639|consen  622 SKPE---KYQLHLHESCVLSLKFAYCGKWFVSTGKDN-------LLNAWRTPYGAS--IFQSKESSSVLSCDISFDDKYI  689 (705)
T ss_pred             CCcc---ceeecccccEEEEEEecccCceeeecCchh-------hhhhccCccccc--eeeccccCcceeeeeccCceEE
Confidence            7655   566777777788999999999999888764       455555544422  2222233456666788899999


Q ss_pred             EEEEecCC
Q 004971          623 VFTSDYGG  630 (721)
Q Consensus       623 ~~~~~~~~  630 (721)
                      +..+.+..
T Consensus       690 VTGSGdkk  697 (705)
T KOG0639|consen  690 VTGSGDKK  697 (705)
T ss_pred             EecCCCcc
Confidence            98887754

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.28  E-value=2.4e-10  Score=108.11  Aligned_cols=157  Identities=18%  Similarity=0.233  Sum_probs=108.1

Q ss_pred             CceeCcCCCEEEEEe-------------CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCc
Q 004971          423 FPSFSPKGDRIAFVE-------------FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSE  486 (721)
Q Consensus       423 ~~~~SpDG~~la~~~-------------~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~  486 (721)
                      .+.|+|+|++|++..             ...|+.++..+.....+.   .+.+.+++|+|+|+.++++..     .....
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g-----~~~~~   84 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYG-----SMPAK   84 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEc-----cCCcc
Confidence            368999999988761             245777777766655554   346899999999999988752     13457


Q ss_pred             EEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEc
Q 004971          487 VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS  566 (721)
Q Consensus       487 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~S  566 (721)
                      +.||++...      ....+..  .....+.|||+|++|++++..+-...|.+||..+.+.  +... .+ .....+.||
T Consensus        85 v~lyd~~~~------~i~~~~~--~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~--i~~~-~~-~~~t~~~Ws  152 (194)
T PF08662_consen   85 VTLYDVKGK------KIFSFGT--QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK--ISTF-EH-SDATDVEWS  152 (194)
T ss_pred             cEEEcCccc------EeEeecC--CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE--eecc-cc-CcEEEEEEc
Confidence            888888521      3344432  3455689999999999987654456799999996552  3222 22 235789999


Q ss_pred             cCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971          567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTG  597 (721)
Q Consensus       567 pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~  597 (721)
                      |||++|+.+..... ......+.+|+..+..
T Consensus       153 PdGr~~~ta~t~~r-~~~dng~~Iw~~~G~~  182 (194)
T PF08662_consen  153 PDGRYLATATTSPR-LRVDNGFKIWSFQGRL  182 (194)
T ss_pred             CCCCEEEEEEeccc-eeccccEEEEEecCeE
Confidence            99999998875311 0123467788877643

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.27  E-value=2.1e-09  Score=108.47  Aligned_cols=270  Identities=16%  Similarity=0.222  Sum_probs=161.9

Q ss_pred             CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCC--EEEEEEeeCCCCCCCCcce
Q 004971          324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSS--RVGYHKCRGGSTREDGNNQ  401 (721)
Q Consensus       324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~--~l~~~~~~~~~~~~~~~~~  401 (721)
                      .+.||- |.+++|....      ..|+++++ ++...+.....-....+..+.|||.|.  .|+|-.-...  .......
T Consensus       136 ~~k~s~-~D~y~ARvv~------~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~--~kpa~~~  205 (561)
T COG5354         136 VLKFSI-DDKYVARVVG------SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKL--NKPAMVR  205 (561)
T ss_pred             eeeeee-cchhhhhhcc------CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccC--CCCcEEE
Confidence            456777 8888776532      23888887 554333221111134567889999754  3444332222  1222233


Q ss_pred             eEEEeccCCCCcceecccCCCCceeCcCCCEEEEE------------eCCcEEEEECCCCceEEE-e-ecCceeeEEcCC
Q 004971          402 LLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV------------EFPGVYVVNSDGSNRRQV-Y-FKNAFSTVWDPV  467 (721)
Q Consensus       402 l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~------------~~~~l~v~d~~~g~~~~l-~-~~~~~~~~~spd  467 (721)
                      ++..........-+....+.-.+.|.+.|++|.+.            +...||++++........ . .+.+.++.|+|+
T Consensus       206 i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~  285 (561)
T COG5354         206 ILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPL  285 (561)
T ss_pred             EEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeeccc
Confidence            44444333333444555566678999999998776            246799999985554333 2 678999999999


Q ss_pred             CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc
Q 004971          468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG  547 (721)
Q Consensus       468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~  547 (721)
                      ++.+++++.     .....+.++.+..       .++-. .....-..+.|||.++++++..-..-...+-+||..+.-.
T Consensus       286 S~~F~vi~g-----~~pa~~s~~~lr~-------Nl~~~-~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~  352 (561)
T COG5354         286 SSRFAVISG-----YMPASVSVFDLRG-------NLRFY-FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK  352 (561)
T ss_pred             CCceeEEec-----ccccceeeccccc-------ceEEe-cCCcccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence            999999872     1233444544432       22222 2223445678999999999987665566888999985431


Q ss_pred             cceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEe
Q 004971          548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD  627 (721)
Q Consensus       548 ~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~  627 (721)
                       .+..+..  .......|||||+.+........ ......+-+||+.+.+.-.+         ..+.|.|.|++.-..+.
T Consensus       353 -~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k-~~~Dn~i~l~~v~g~~~fel---------~~~~W~p~~~~~ttsSs  419 (561)
T COG5354         353 -VAGAFNG--LNTSYCDWSPDGQFYDTDTTSEK-LRVDNSIKLWDVYGAKVFEL---------TNITWDPSGQYVTTSSS  419 (561)
T ss_pred             -EEEEeec--CCceEeeccCCceEEEecCCCcc-cccCcceEEEEecCchhhhh---------hhccccCCcccceeecc
Confidence             1212221  12245689999997766544321 12345788888877544333         34678888887655554


Q ss_pred             cC
Q 004971          628 YG  629 (721)
Q Consensus       628 ~~  629 (721)
                      ..
T Consensus       420 ~~  421 (561)
T COG5354         420 CP  421 (561)
T ss_pred             CC
Confidence            43

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.27  E-value=2.1e-09  Score=108.49  Aligned_cols=314  Identities=16%  Similarity=0.121  Sum_probs=199.9

Q ss_pred             CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC---
Q 004971          318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST---  394 (721)
Q Consensus       318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~---  394 (721)
                      ..+.+...++|| .|.++++....      .|.+|.-....  .+....  ...+....|||.+++|..-.......   
T Consensus        31 ~~~p~~~~~~SP-~G~~l~~~~~~------~V~~~~g~~~~--~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~   99 (561)
T COG5354          31 ENWPVAYVSESP-LGTYLFSEHAA------GVECWGGPSKA--KLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEI   99 (561)
T ss_pred             cCcchhheeecC-cchheehhhcc------ceEEccccchh--heeeee--cCCceecccCcccceeeeeccCCccChhh
Confidence            455667889999 99998874322      38888766554  333322  33466788999999998765544311   


Q ss_pred             ---CCCCcceeEEEeccCCCCcc----eecccCCC-CceeCcCCCEEEEEeCCcEEEEECCCCceEEE-----eecCcee
Q 004971          395 ---REDGNNQLLLENIKSPLPDI----SLFRFDGS-FPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQV-----YFKNAFS  461 (721)
Q Consensus       395 ---~~~~~~~l~~~~~~~~~~~~----~~~~~~~~-~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l-----~~~~~~~  461 (721)
                         ......++.++++.++.--.    ...+..+. .+.||-|.+++|.+....|+++++ ++...+.     ....+..
T Consensus       100 e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~d  178 (561)
T COG5354         100 EISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILD  178 (561)
T ss_pred             ccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceee
Confidence               11111357777777662100    00111122 468899999998888889999997 4443222     2567889


Q ss_pred             eEEcCCC--CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC-------
Q 004971          462 TVWDPVR--EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT-------  532 (721)
Q Consensus       462 ~~~spdg--~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~-------  532 (721)
                      +.|||.|  ..|++-..  +.......+.||.+..+.     .+..-+........+.|.+.|++|++...+.       
T Consensus       179 FsisP~~n~~~la~~tP--Ek~~kpa~~~i~sIp~~s-----~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsy  251 (561)
T COG5354         179 FSISPEGNHDELAYWTP--EKLNKPAMVRILSIPKNS-----VLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSY  251 (561)
T ss_pred             EEecCCCCCceEEEEcc--ccCCCCcEEEEEEccCCC-----eeeeeeeEeecccEEEEecCCceEEEEEEEeeecccce
Confidence            9999964  44555542  222346778899888543     2222222223445689999999999876542       


Q ss_pred             -CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcC
Q 004971          533 -GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN  611 (721)
Q Consensus       533 -g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~  611 (721)
                       |...||++++.....   .....-...+....|+|+++.+++.+.-.     ...+-.+|+.+. ++-..   ....-.
T Consensus       252 fgesnLyl~~~~e~~i---~V~~~~~~pVhdf~W~p~S~~F~vi~g~~-----pa~~s~~~lr~N-l~~~~---Pe~~rN  319 (561)
T COG5354         252 FGESNLYLLRITERSI---PVEKDLKDPVHDFTWEPLSSRFAVISGYM-----PASVSVFDLRGN-LRFYF---PEQKRN  319 (561)
T ss_pred             eccceEEEEeeccccc---ceeccccccceeeeecccCCceeEEeccc-----ccceeecccccc-eEEec---CCcccc
Confidence             456899999985542   22213345678999999999999988542     347888898876 33332   344567


Q ss_pred             CeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971          612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       612 ~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~  676 (721)
                      .+.|||.+++++++..++..              +++-++|..+....-=+-.+..-.-..|||+
T Consensus       320 T~~fsp~~r~il~agF~nl~--------------gni~i~~~~~rf~~~~~~~~~n~s~~~wspd  370 (561)
T COG5354         320 TIFFSPHERYILFAGFDNLQ--------------GNIEIFDPAGRFKVAGAFNGLNTSYCDWSPD  370 (561)
T ss_pred             cccccCcccEEEEecCCccc--------------cceEEeccCCceEEEEEeecCCceEeeccCC
Confidence            78999999999998776542              3577888776533221111222344678885

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.27  E-value=1e-09  Score=101.78  Aligned_cols=276  Identities=13%  Similarity=0.062  Sum_probs=183.8

Q ss_pred             eEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeC
Q 004971          312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRG  391 (721)
Q Consensus       312 ~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~  391 (721)
                      +..+.+|...+..+.+.. +|+.|.. ..    .+...-+|--.+|+  .|....+|.+.++++.++-+.++++..+.+.
T Consensus         3 pi~l~GHERplTqiKyN~-eGDLlFs-ca----KD~~~~vw~s~nGe--rlGty~GHtGavW~~Did~~s~~liTGSAD~   74 (327)
T KOG0643|consen    3 PILLQGHERPLTQIKYNR-EGDLLFS-CA----KDSTPTVWYSLNGE--RLGTYDGHTGAVWCCDIDWDSKHLITGSADQ   74 (327)
T ss_pred             ccccccCccccceEEecC-CCcEEEE-ec----CCCCceEEEecCCc--eeeeecCCCceEEEEEecCCcceeeeccccc
Confidence            344556666677888888 9986544 22    23345677666777  7777788899999999999999999877666


Q ss_pred             CCCCCCCcceeEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEe------CCcEEEEECC-------CCc-eEEEe-
Q 004971          392 GSTREDGNNQLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVE------FPGVYVVNSD-------GSN-RRQVY-  455 (721)
Q Consensus       392 ~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~------~~~l~v~d~~-------~g~-~~~l~-  455 (721)
                      .         +.+++...+.. .....+..+....|+++|..+++..      ...|.++|+.       +.+ ...|. 
T Consensus        75 t---------~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t  145 (327)
T KOG0643|consen   75 T---------AKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT  145 (327)
T ss_pred             e---------eEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC
Confidence            5         34455554422 1222334456678999999888873      3567888876       233 23333 


Q ss_pred             -ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCc
Q 004971          456 -FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY  534 (721)
Q Consensus       456 -~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~  534 (721)
                       ...+....|+|-++.|+..-       +++.+.+|++.....    .+.....+...+..+.+|||..+++..+.   +
T Consensus       146 ~~skit~a~Wg~l~~~ii~Gh-------e~G~is~~da~~g~~----~v~s~~~h~~~Ind~q~s~d~T~FiT~s~---D  211 (327)
T KOG0643|consen  146 PDSKITSALWGPLGETIIAGH-------EDGSISIYDARTGKE----LVDSDEEHSSKINDLQFSRDRTYFITGSK---D  211 (327)
T ss_pred             CccceeeeeecccCCEEEEec-------CCCcEEEEEcccCce----eeechhhhccccccccccCCcceEEeccc---C
Confidence             55678899999999999875       678999998875431    22333345567888999999999998887   6


Q ss_pred             eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE-----ee------e
Q 004971          535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK-----LI------Q  603 (721)
Q Consensus       535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~-----l~------~  603 (721)
                      ..-.++|..+-+.  ++.... ...++..+++|--.+++......     -..+-.-+...|+-..     ++      -
T Consensus       212 ttakl~D~~tl~v--~Kty~t-e~PvN~aaisP~~d~VilgGGqe-----A~dVTTT~~r~GKFEArFyh~i~eEEigrv  283 (327)
T KOG0643|consen  212 TTAKLVDVRTLEV--LKTYTT-ERPVNTAAISPLLDHVILGGGQE-----AMDVTTTSTRAGKFEARFYHLIFEEEIGRV  283 (327)
T ss_pred             ccceeeeccceee--EEEeee-cccccceecccccceEEecCCce-----eeeeeeecccccchhhhHHHHHHHHHhccc
Confidence            7788889887553  333332 33457889999888888776652     1233322222232110     00      0


Q ss_pred             cCCCCCcCCeEECCCCCEEEEEE
Q 004971          604 SGSAGRANHPYFSPDGKSIVFTS  626 (721)
Q Consensus       604 ~~~~~~~~~~~~SpDG~~l~~~~  626 (721)
                      .+|-+.++.++|+|||+......
T Consensus       284 kGHFGPINsvAfhPdGksYsSGG  306 (327)
T KOG0643|consen  284 KGHFGPINSVAFHPDGKSYSSGG  306 (327)
T ss_pred             cccccCcceeEECCCCcccccCC
Confidence            13778899999999999654433

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.26  E-value=8.1e-09  Score=107.99  Aligned_cols=213  Identities=8%  Similarity=0.039  Sum_probs=142.9

Q ss_pred             CceeCcCCCEEEEEe-CCcEEEEECCCCce-EEEe--ecCceeeEEcCC--C-CeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971          423 FPSFSPKGDRIAFVE-FPGVYVVNSDGSNR-RQVY--FKNAFSTVWDPV--R-EAVVYTSGGPEFASESSEVDIISINVD  495 (721)
Q Consensus       423 ~~~~SpDG~~la~~~-~~~l~v~d~~~g~~-~~l~--~~~~~~~~~spd--g-~~la~~~~~~~~~~~~~~~~i~~~~~~  495 (721)
                      .+++||||++||... .+.|.++++..-+. ..+.  ...+..+.||.-  + +.||..+       .+.-++||++..+
T Consensus       464 ~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas-------rdRlIHV~Dv~rn  536 (1080)
T KOG1408|consen  464 ALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS-------RDRLIHVYDVKRN  536 (1080)
T ss_pred             EEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc-------CCceEEEEecccc
Confidence            468999999999984 67899999875442 1222  445556666532  2 3333333       4667888887765


Q ss_pred             CCCCccceEEcccCCCCCcceEEccCC--CEEEEEEeeCCceeEE-EEECCCCcccceEECc-----CCCcCceeeEEcc
Q 004971          496 DVDGVSAVRRLTTNGKNNAFPSVSPDG--KWIVFRSTRTGYKNLY-IMDAEGGEGYGLHRLT-----EGPWSDTMCNWSP  567 (721)
Q Consensus       496 ~~~~~~~~~~l~~~~~~~~~~~~SpDg--~~l~~~s~~~g~~~l~-~~d~~~g~~~~~~~l~-----~~~~~~~~~~~Sp  567 (721)
                      -.    ....|..+...+..+.|.-.|  .+++....   +..|+ +..-..+.   ....+     ........++..|
T Consensus       537 y~----l~qtld~HSssITsvKFa~~gln~~MiscGA---DksimFr~~qk~~~---g~~f~r~t~t~~ktTlYDm~Vdp  606 (1080)
T KOG1408|consen  537 YD----LVQTLDGHSSSITSVKFACNGLNRKMISCGA---DKSIMFRVNQKASS---GRLFPRHTQTLSKTTLYDMAVDP  606 (1080)
T ss_pred             cc----hhhhhcccccceeEEEEeecCCceEEEeccC---chhhheehhccccC---ceeccccccccccceEEEeeeCC
Confidence            43    555666766677778887766  33333322   22222 22221121   11111     1233457889999


Q ss_pred             CCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC--CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCC
Q 004971          568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG--SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY  645 (721)
Q Consensus       568 DG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~  645 (721)
                      ..++++....+.       .|.++++.+|+.++.+...  +.+..--+...|.|-||+....+.+               
T Consensus       607 ~~k~v~t~cQDr-------nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt---------------  664 (1080)
T KOG1408|consen  607 TSKLVVTVCQDR-------NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT---------------  664 (1080)
T ss_pred             CcceEEEEeccc-------ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc---------------
Confidence            999999888774       8999999999998888642  2344455788999999998887764               


Q ss_pred             ccEEEEEcCCCCe-EEeccCCCCCCCceecCC
Q 004971          646 GEIFKIKLDGSDL-KRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       646 ~~l~~~d~~~~~~-~~lt~~~~~~~~~~~sp~  676 (721)
                        |-++|.-+|+. .+.+.|...+....|+++
T Consensus       665 --l~~~Df~sgEcvA~m~GHsE~VTG~kF~nD  694 (1080)
T KOG1408|consen  665 --LCFVDFVSGECVAQMTGHSEAVTGVKFLND  694 (1080)
T ss_pred             --eEEEEeccchhhhhhcCcchheeeeeeccc
Confidence              88899888874 699999999999999984

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.26  E-value=1.9e-10  Score=115.24  Aligned_cols=263  Identities=14%  Similarity=0.121  Sum_probs=173.3

Q ss_pred             eeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCC--CCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          273 CWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP--PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       273 ~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      ..|...+.+|   ....|.+.||.+..++..      ....++.-  .+..++...++| ||+.|+.     |++...|-
T Consensus       426 tIS~~trhVy---TgGkgcVKVWdis~pg~k------~PvsqLdcl~rdnyiRSckL~p-dgrtLiv-----GGeastls  490 (705)
T KOG0639|consen  426 TISNPTRHVY---TGGKGCVKVWDISQPGNK------SPVSQLDCLNRDNYIRSCKLLP-DGRTLIV-----GGEASTLS  490 (705)
T ss_pred             EecCCcceeE---ecCCCeEEEeeccCCCCC------CccccccccCcccceeeeEecC-CCceEEe-----ccccceee
Confidence            3444434444   233688899987665433      11222221  244677889999 9999988     45567799


Q ss_pred             EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC--CCcceecccCCCCceeCc
Q 004971          351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSP  428 (721)
Q Consensus       351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~Sp  428 (721)
                      +||+++...+.-............++.|||.+..+....++.         |.++|+...  ...+....-....+.+|+
T Consensus       491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGn---------I~vwDLhnq~~VrqfqGhtDGascIdis~  561 (705)
T KOG0639|consen  491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGN---------IAVWDLHNQTLVRQFQGHTDGASCIDISK  561 (705)
T ss_pred             eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCc---------EEEEEcccceeeecccCCCCCceeEEecC
Confidence            999998765433322222334566889999976655444444         556666543  223333333445678999


Q ss_pred             CCCEEEEEe-CCcEEEEECCCCce-EEE-eecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE
Q 004971          429 KGDRIAFVE-FPGVYVVNSDGSNR-RQV-YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR  505 (721)
Q Consensus       429 DG~~la~~~-~~~l~v~d~~~g~~-~~l-~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  505 (721)
                      ||.+|...+ +..+.-||+..+.. .+- +...++++.+.|.+.+|++..       .+++  ++.+...+.    ...+
T Consensus       562 dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGM-------ens~--vevlh~skp----~kyq  628 (705)
T KOG0639|consen  562 DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGM-------ENSN--VEVLHTSKP----EKYQ  628 (705)
T ss_pred             CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeec-------ccCc--EEEEecCCc----ccee
Confidence            999888775 88999999987653 222 256788999999999999986       2344  444554443    5567


Q ss_pred             cccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971          506 LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       506 l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~  578 (721)
                      |..++..+..+.|++-|+|++....   ++-|-.|..--|..  +.+..+. ..+.....|-|.++|+.++.+
T Consensus       629 lhlheScVLSlKFa~cGkwfvStGk---DnlLnawrtPyGas--iFqskE~-SsVlsCDIS~ddkyIVTGSGd  695 (705)
T KOG0639|consen  629 LHLHESCVLSLKFAYCGKWFVSTGK---DNLLNAWRTPYGAS--IFQSKES-SSVLSCDISFDDKYIVTGSGD  695 (705)
T ss_pred             ecccccEEEEEEecccCceeeecCc---hhhhhhccCccccc--eeecccc-CcceeeeeccCceEEEecCCC
Confidence            7778778889999999999998775   55555665544542  4444443 345677889999999988876

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.25  E-value=2.7e-10  Score=104.52  Aligned_cols=270  Identities=14%  Similarity=0.121  Sum_probs=174.6

Q ss_pred             CCCcccCceee---cCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971          318 PGLHAFTPATS---PGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST  394 (721)
Q Consensus       318 ~~~~~~~~~~s---p~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~  394 (721)
                      +...+..++||   | +|-+|+.++.+     +.-.+.+-++|.  -+..+++|.+.++...+..+..+.+....+-.  
T Consensus        13 htrpvvdl~~s~itp-~g~flisa~kd-----~~pmlr~g~tgd--wigtfeghkgavw~~~l~~na~~aasaaadft--   82 (334)
T KOG0278|consen   13 HTRPVVDLAFSPITP-DGYFLISASKD-----GKPMLRNGDTGD--WIGTFEGHKGAVWSATLNKNATRAASAAADFT--   82 (334)
T ss_pred             CCcceeEEeccCCCC-CceEEEEeccC-----CCchhccCCCCC--cEEeeeccCcceeeeecCchhhhhhhhcccch--
Confidence            33344455554   5 77555554322     223456667776  55666777777766666666555444333333  


Q ss_pred             CCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCc--eEEEe--ecCceeeEEcCCCC
Q 004971          395 REDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSN--RRQVY--FKNAFSTVWDPVRE  469 (721)
Q Consensus       395 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~--~~~l~--~~~~~~~~~spdg~  469 (721)
                           ..+|-.- .+....-.....-+...+|+.|.++|+..+ ..-|.++|++..+  +..+.  .+.+..+-|-...+
T Consensus        83 -----akvw~a~-tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~  156 (334)
T KOG0278|consen   83 -----AKVWDAV-TGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK  156 (334)
T ss_pred             -----hhhhhhh-hhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc
Confidence                 2222211 111111111223345679999999888875 4557778876554  33444  56788888877777


Q ss_pred             eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccc
Q 004971          470 AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG  549 (721)
Q Consensus       470 ~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~  549 (721)
                      .|+..+       +++.+++|+.....     .+..|.... .+.++.+|+||+.|..+.    ...|..||..+=.   
T Consensus       157 ~iLSSa-------dd~tVRLWD~rTgt-----~v~sL~~~s-~VtSlEvs~dG~ilTia~----gssV~Fwdaksf~---  216 (334)
T KOG0278|consen  157 CILSSA-------DDKTVRLWDHRTGT-----EVQSLEFNS-PVTSLEVSQDGRILTIAY----GSSVKFWDAKSFG---  216 (334)
T ss_pred             eEEeec-------cCCceEEEEeccCc-----EEEEEecCC-CCcceeeccCCCEEEEec----CceeEEecccccc---
Confidence            777654       57899999998765     455554433 678899999999887766    4678899988655   


Q ss_pred             eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       550 ~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      +..-...+..+.+.+++|+-..++.+..+       ..+|.||-.+|+.+.....++.+.+..+.|||||...+..+.++
T Consensus       217 ~lKs~k~P~nV~SASL~P~k~~fVaGged-------~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG  289 (334)
T KOG0278|consen  217 LLKSYKMPCNVESASLHPKKEFFVAGGED-------FKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDG  289 (334)
T ss_pred             ceeeccCccccccccccCCCceEEecCcc-------eEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCc
Confidence            22223345566788999998655555555       38999999999877765445788899999999999777666666


Q ss_pred             C
Q 004971          630 G  630 (721)
Q Consensus       630 ~  630 (721)
                      +
T Consensus       290 T  290 (334)
T KOG0278|consen  290 T  290 (334)
T ss_pred             e
Confidence            4

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.25  E-value=1.1e-09  Score=108.14  Aligned_cols=254  Identities=11%  Similarity=0.072  Sum_probs=175.1

Q ss_pred             CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCC
Q 004971          343 TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGS  422 (721)
Q Consensus       343 g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  422 (721)
                      |+.+..+.++|..+++  .+..+.++...+....++|+...++..+.+..       ..+|...+......+......+.
T Consensus       237 GG~d~~av~~d~~s~q--~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~-------i~vws~~~~s~~~~~~~h~~~V~  307 (506)
T KOG0289|consen  237 GGEDKTAVLFDKPSNQ--ILATLKGHTKKITSVKFHKDLDTVITASADEI-------IRVWSVPLSSEPTSSRPHEEPVT  307 (506)
T ss_pred             cCCCCceEEEecchhh--hhhhccCcceEEEEEEeccchhheeecCCcce-------EEeeccccccCccccccccccce
Confidence            4456568899988876  44455677777888899999887776655444       33444433333333333444566


Q ss_pred             CceeCcCCCEEEEEe-CCcEEEEECCCCceE-EEee----cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          423 FPSFSPKGDRIAFVE-FPGVYVVNSDGSNRR-QVYF----KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       423 ~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~-~l~~----~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      ++..+|.|.+++..+ ++.....|+.++... .+..    -.....+|.|||-.+....       .++.++||++....
T Consensus       308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt-------~d~~vkiwdlks~~  380 (506)
T KOG0289|consen  308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT-------PDGVVKIWDLKSQT  380 (506)
T ss_pred             eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC-------CCceEEEEEcCCcc
Confidence            788899999999886 444555667766532 2221    2467899999997766554       57899999998765


Q ss_pred             CCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC-CcCceeeEEccCCCEEEEE
Q 004971          497 VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-PWSDTMCNWSPDGEWIAFA  575 (721)
Q Consensus       497 ~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~-~~~~~~~~~SpDG~~l~~~  575 (721)
                           ...++..+.+.+..++|+-+|-||++..+   +..+.+||+..-+.  ...+... ...+..+.|.+.|++|+..
T Consensus       381 -----~~a~Fpght~~vk~i~FsENGY~Lat~ad---d~~V~lwDLRKl~n--~kt~~l~~~~~v~s~~fD~SGt~L~~~  450 (506)
T KOG0289|consen  381 -----NVAKFPGHTGPVKAISFSENGYWLATAAD---DGSVKLWDLRKLKN--FKTIQLDEKKEVNSLSFDQSGTYLGIA  450 (506)
T ss_pred             -----ccccCCCCCCceeEEEeccCceEEEEEec---CCeEEEEEehhhcc--cceeeccccccceeEEEcCCCCeEEee
Confidence                 56677777788999999999999999997   66699999986543  3333322 2346789999999999988


Q ss_pred             EccCCCCCCceeEEEEecCCCceEEeeec-CCCCCcCCeEECCCCCEEEEEEecC
Q 004971          576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQS-GSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       576 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      +.+       -+||+++-.+..-+.+... .+.+....+.|..+-++++..+.+.
T Consensus       451 g~~-------l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~  498 (506)
T KOG0289|consen  451 GSD-------LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDA  498 (506)
T ss_pred             cce-------eEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchh
Confidence            655       3777777555544333211 1445667788888888877766654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.25  E-value=9.8e-09  Score=110.80  Aligned_cols=264  Identities=15%  Similarity=0.155  Sum_probs=168.2

Q ss_pred             CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC--CCCCcce
Q 004971          324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST--REDGNNQ  401 (721)
Q Consensus       324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~--~~~~~~~  401 (721)
                      ...+|| ||++++|.....|++...|+++|+++|+...-. +.  ......+.|++|++.++|...+....  ......+
T Consensus       128 ~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  128 GFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-cc--ccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            567899 999999999998999999999999999743211 11  11222389999999999988766422  0111267


Q ss_pred             eEEEeccCCCCc-ceeccc-C-CC---CceeCcCCCEEEEE----eC-CcEEEEECCCC-----ceEEEeec-CceeeEE
Q 004971          402 LLLENIKSPLPD-ISLFRF-D-GS---FPSFSPKGDRIAFV----EF-PGVYVVNSDGS-----NRRQVYFK-NAFSTVW  464 (721)
Q Consensus       402 l~~~~~~~~~~~-~~~~~~-~-~~---~~~~SpDG~~la~~----~~-~~l~v~d~~~g-----~~~~l~~~-~~~~~~~  464 (721)
                      ++.+.+.++... ...+.. . ..   .+..|+||++|++.    .. ..+++.++..+     ..+.+... .......
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence            888888776443 222211 1 11   35679999998776    23 67999999875     45666532 2222223


Q ss_pred             cCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC-
Q 004971          465 DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE-  543 (721)
Q Consensus       465 spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~-  543 (721)
                      ...|..+++.++     .......|+.++++..........+..+.....--.++..+++|++....++..+|+++++. 
T Consensus       284 ~~~~~~~yi~Tn-----~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~  358 (414)
T PF02897_consen  284 DHHGDRLYILTN-----DDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDD  358 (414)
T ss_dssp             EEETTEEEEEE------TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-
T ss_pred             EccCCEEEEeeC-----CCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCC
Confidence            333777777765     24567888888887642111222444444333445667778999999988889999999999 


Q ss_pred             CCcccceEECcC-CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971          544 GGEGYGLHRLTE-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI  602 (721)
Q Consensus       544 ~g~~~~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  602 (721)
                      +..   ...+.. ..+.+......+++..+.|.....   .....+|.+|+.+++...+.
T Consensus       359 ~~~---~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~---~~P~~~y~~d~~t~~~~~~k  412 (414)
T PF02897_consen  359 GKE---SREIPLPEAGSVSGVSGDFDSDELRFSYSSF---TTPPTVYRYDLATGELTLLK  412 (414)
T ss_dssp             TEE---EEEEESSSSSEEEEEES-TT-SEEEEEEEET---TEEEEEEEEETTTTCEEEEE
T ss_pred             CcE---EeeecCCcceEEeccCCCCCCCEEEEEEeCC---CCCCEEEEEECCCCCEEEEE
Confidence            444   333332 223345556667888888877654   35679999999999887764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=6.7e-08  Score=99.99  Aligned_cols=373  Identities=12%  Similarity=0.087  Sum_probs=210.2

Q ss_pred             CCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEE
Q 004971          176 GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFL  255 (721)
Q Consensus       176 g~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d  255 (721)
                      -++++..+++..        .++|.++. ..+...+..|.......+..|.--++..++++-.          -.+|.|+
T Consensus        67 knWiv~GsDD~~--------IrVfnynt-~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~----------iKlW~we  127 (794)
T KOG0276|consen   67 KNWIVTGSDDMQ--------IRVFNYNT-GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMT----------IKLWDWE  127 (794)
T ss_pred             cceEEEecCCce--------EEEEeccc-ceeeEEeeccccceeeeeecCCCCeEEecCCccE----------EEEeecc
Confidence            567777666641        46666652 3456677677777777789998889988775543          4455544


Q ss_pred             cCCCceeEEEe-ccCC---cceeccCCe-EEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecC
Q 004971          256 TRDGTQRVKIV-ENGG---WPCWVDEST-LFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPG  330 (721)
Q Consensus       256 ~~~g~~~~l~~-~~~~---~~~ws~dg~-l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~  330 (721)
                        .+-...-++ ....   ..+|.|... .+.+  ..-|.++.+|.+..+.         ....+.+|...+..+.+-+ 
T Consensus       128 --~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS--~sLDrTVKVWslgs~~---------~nfTl~gHekGVN~Vdyy~-  193 (794)
T KOG0276|consen  128 --NEWACEQTFEGHEHYVMQVAFNPKDPNTFAS--ASLDRTVKVWSLGSPH---------PNFTLEGHEKGVNCVDYYT-  193 (794)
T ss_pred             --CceeeeeEEcCcceEEEEEEecCCCccceee--eeccccEEEEEcCCCC---------CceeeeccccCcceEEecc-
Confidence              333222222 2222   347887644 3342  2337899999765554         3445556666677777777 


Q ss_pred             CCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCC------------C
Q 004971          331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRED------------G  398 (721)
Q Consensus       331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~------------~  398 (721)
                      .|+.=+..+   |.++..|.+||.++...  +..+++|...+....|.|.=..|+..++++..+.|.            +
T Consensus       194 ~gdkpylIs---gaDD~tiKvWDyQtk~C--V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g  268 (794)
T KOG0276|consen  194 GGDKPYLIS---GADDLTIKVWDYQTKSC--VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG  268 (794)
T ss_pred             CCCcceEEe---cCCCceEEEeecchHHH--HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC
Confidence            564333332   56788899999998874  344466677777788888877777777776632111            0


Q ss_pred             cceeEEEeccCCCCccee--------cccCCCCc--eeCcCCCEEEEEeCCcEEEEECCC---------CceEEEe----
Q 004971          399 NNQLLLENIKSPLPDISL--------FRFDGSFP--SFSPKGDRIAFVEFPGVYVVNSDG---------SNRRQVY----  455 (721)
Q Consensus       399 ~~~l~~~~~~~~~~~~~~--------~~~~~~~~--~~SpDG~~la~~~~~~l~v~d~~~---------g~~~~l~----  455 (721)
                      ..++|-.....+...+..        ....-..|  ..++.| +|++...+.|...++.+         |+...+.    
T Consensus       269 leRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~g-KIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeL  347 (794)
T KOG0276|consen  269 LERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNG-KIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKEL  347 (794)
T ss_pred             CceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCc-cEEEEcCceeeeeeceeccCcccccCCccccchhhhc
Confidence            012222111011111110        00111123  334445 36666555555555432         2222222    


Q ss_pred             ---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-CCCCCcceEEccCCCEEEEEEee
Q 004971          456 ---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTR  531 (721)
Q Consensus       456 ---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~  531 (721)
                         .-.+..++-||+|+.++++.        +++..||.-=.           +.. .-+....+.|++|....++... 
T Consensus       348 gs~eiyPq~L~hsPNGrfV~Vcg--------dGEyiIyTala-----------~RnK~fG~~~eFvw~~dsne~avRes-  407 (794)
T KOG0276|consen  348 GSVEIYPQTLAHSPNGRFVVVCG--------DGEYIIYTALA-----------LRNKAFGSGLEFVWAADSNEFAVRES-  407 (794)
T ss_pred             cccccchHHhccCCCCcEEEEec--------CccEEEEEeee-----------hhhcccccceeEEEcCCCCeEEEEec-
Confidence               11234678899999999875        56677765211           111 1134566899999776666643 


Q ss_pred             CCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcC
Q 004971          532 TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN  611 (721)
Q Consensus       532 ~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~  611 (721)
                        ...|.++  .+.+.  .+.+... .. ..-.|+  |..|.+.+.+        .++.||-++++..+-..    ....
T Consensus       408 --~~~vki~--knfke--~ksi~~~-~~-~e~i~g--g~Llg~~ss~--------~~~fydW~~~~lVrrI~----v~~k  465 (794)
T KOG0276|consen  408 --NGNVKIF--KNFKE--HKSIRPD-MS-AEGIFG--GPLLGVRSSD--------FLCFYDWESGELVRRIE----VTSK  465 (794)
T ss_pred             --CCceEEE--eccee--ccccccc-cc-eeeecC--CceEEEEeCC--------eEEEEEcccceEEEEEe----eccc
Confidence              4455555  22321  2223221 11 112232  5556666655        68888988887665443    2456


Q ss_pred             CeEECCCCCEEEEEEecC
Q 004971          612 HPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       612 ~~~~SpDG~~l~~~~~~~  629 (721)
                      ++.|+-||..++..+.++
T Consensus       466 ~v~w~d~g~lVai~~d~S  483 (794)
T KOG0276|consen  466 HVYWSDNGELVAIAGDDS  483 (794)
T ss_pred             eeEEecCCCEEEEEecCc
Confidence            799999999888877765

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.23  E-value=5.1e-08  Score=98.37  Aligned_cols=413  Identities=13%  Similarity=0.153  Sum_probs=223.5

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeee
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTD  250 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~  250 (721)
                      -|  .|+.++|+..-          ..+|.++  ....+-...|........++||--++|.....+.. .+   .....
T Consensus        74 lp--tgE~vyfvA~V----------~Vl~n~e--e~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~-g~---~~~ph  135 (626)
T KOG2106|consen   74 LP--TGELVYFVAAV----------GVLYNWE--ERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTS-GR---PLQPH  135 (626)
T ss_pred             cc--CccEEEEeccE----------EEEEeeh--hhhcccccCCCCceEEEeecCCceeeccCcccccC-CC---cCCCe
Confidence            67  78888887543          2566553  22222233444444444789987777753322210 01   12356


Q ss_pred             EEEEEcCCCceeEEEe--ccC-CcceeccC--CeEEEEeccCC-CCcEEEEEEecCCCcceeccccceEEeCCCCCcccC
Q 004971          251 IYIFLTRDGTQRVKIV--ENG-GWPCWVDE--STLFFHRKSEE-DDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFT  324 (721)
Q Consensus       251 i~~~d~~~g~~~~l~~--~~~-~~~~ws~d--g~l~~~~~~~~-~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (721)
                      +.+||..+-....+..  +.+ ...+||+-  |.++.. .++. +....+|+= ..+.        +.-.+......+..
T Consensus       136 vriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~-vD~s~~h~lSVWdW-qk~~--------~~~~vk~sne~v~~  205 (626)
T KOG2106|consen  136 VRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCA-VDDSNPHMLSVWDW-QKKA--------KLGPVKTSNEVVFL  205 (626)
T ss_pred             eeecccccceeeeeeccccccceeeeecccCCCceEEE-ecCCCccccchhhc-hhhh--------ccCcceeccceEEE
Confidence            7777754433322321  222 14578843  333332 2321 233355521 1110        11222222334567


Q ss_pred             ceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEee-cccCC-CCcccCcEEcCCCCEEEEEEeeCCCCCCCCccee
Q 004971          325 PATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELT-RFVSP-KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQL  402 (721)
Q Consensus       325 ~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~-~~~~~-~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l  402 (721)
                      ..|.| .+..+.... .    .+.|+.|+++++...+-. .++.+ ...+.++.|.++|+.|-  .+ .+       ..+
T Consensus       206 a~FHP-td~nliit~-G----k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT--gD-S~-------G~i  269 (626)
T KOG2106|consen  206 ATFHP-TDPNLIITC-G----KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT--GD-SG-------GNI  269 (626)
T ss_pred             EEecc-CCCcEEEEe-C----CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe--ec-CC-------ceE
Confidence            78999 665555432 2    245999999988643321 12221 24477889999998652  22 22       235


Q ss_pred             EEEeccCC--CCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeEEEEe
Q 004971          403 LLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVYTS  475 (721)
Q Consensus       403 ~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~~~  475 (721)
                      .++...+.  .+++...+.....+..-.||..|. . .+..|..||-+=.+.+.+.    .+.++.++  +.+.-|++..
T Consensus       270 ~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~--e~~~di~vGT  346 (626)
T KOG2106|consen  270 LIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVA--EGKGDILVGT  346 (626)
T ss_pred             EEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEe--cCCCcEEEee
Confidence            55554332  111122233334455566775544 4 3667888884333333332    22333322  2222254443


Q ss_pred             cCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC
Q 004971          476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE  555 (721)
Q Consensus       476 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~  555 (721)
                      .         ...|..-.+...    -......+......++..|+...++..+.   +.++.+|+  ..++ .-..+..
T Consensus       347 t---------rN~iL~Gt~~~~----f~~~v~gh~delwgla~hps~~q~~T~gq---dk~v~lW~--~~k~-~wt~~~~  407 (626)
T KOG2106|consen  347 T---------RNFILQGTLENG----FTLTVQGHGDELWGLATHPSKNQLLTCGQ---DKHVRLWN--DHKL-EWTKIIE  407 (626)
T ss_pred             c---------cceEEEeeecCC----ceEEEEecccceeeEEcCCChhheeeccC---cceEEEcc--CCce-eEEEEec
Confidence            1         122332233221    11222233346678899999998888876   78899998  2231 1233333


Q ss_pred             CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCC
Q 004971          556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP  635 (721)
Q Consensus       556 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~  635 (721)
                      .+  .....|.|.| .|+.+...+       ..+++|..+.....+-.  .......+.|||||.+|+..+.++-.    
T Consensus       408 d~--~~~~~fhpsg-~va~Gt~~G-------~w~V~d~e~~~lv~~~~--d~~~ls~v~ysp~G~~lAvgs~d~~i----  471 (626)
T KOG2106|consen  408 DP--AECADFHPSG-VVAVGTATG-------RWFVLDTETQDLVTIHT--DNEQLSVVRYSPDGAFLAVGSHDNHI----  471 (626)
T ss_pred             Cc--eeEeeccCcc-eEEEeeccc-------eEEEEecccceeEEEEe--cCCceEEEEEcCCCCEEEEecCCCeE----
Confidence            32  3678999999 888888775       78999998866555543  25567889999999999999988743    


Q ss_pred             CCCCCCCCCCccEEEEEcCCCCeEEeccCC-CCCCCceecCC
Q 004971          636 ISTPHQYQPYGEIFKIKLDGSDLKRLTQNS-FEDGTPAWGPR  676 (721)
Q Consensus       636 ~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~-~~~~~~~~sp~  676 (721)
                                 -||.++.++.+..++-... ....+..||++
T Consensus       472 -----------yiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D  502 (626)
T KOG2106|consen  472 -----------YIYRVSANGRKYSRVGKCSGSPITHLDWSSD  502 (626)
T ss_pred             -----------EEEEECCCCcEEEEeeeecCceeEEeeecCC
Confidence                       2666666666655555433 34567889986

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.22  E-value=3.9e-10  Score=108.96  Aligned_cols=261  Identities=13%  Similarity=0.090  Sum_probs=175.1

Q ss_pred             eccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEE
Q 004971          274 WVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFD  353 (721)
Q Consensus       274 ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~d  353 (721)
                      +.|+-.+.+  ...+++.+.+|+.....         -..-+-++.-.+..+.|+. .|++|+..+     .+..+.+||
T Consensus       116 ~hp~~~~v~--~as~d~tikv~D~~tg~---------~e~~LrGHt~sv~di~~~a-~Gk~l~tcS-----sDl~~~LWd  178 (406)
T KOG0295|consen  116 FHPSEALVV--SASEDATIKVFDTETGE---------LERSLRGHTDSVFDISFDA-SGKYLATCS-----SDLSAKLWD  178 (406)
T ss_pred             eccCceEEE--EecCCceEEEEEccchh---------hhhhhhccccceeEEEEec-CccEEEecC-----Cccchhhee
Confidence            445644544  23347788787432221         2222334444577889998 998887743     334488999


Q ss_pred             CCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC--CCcceecccCCCCceeCcCCC
Q 004971          354 LVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGD  431 (721)
Q Consensus       354 l~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~  431 (721)
                      .++- ...+....++...+..+.|-|-|.+|+..+.+...         ..+++..+  ...+...+.-.+.++.+.||.
T Consensus       179 ~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~ti---------k~We~~tg~cv~t~~~h~ewvr~v~v~~DGt  248 (406)
T KOG0295|consen  179 FDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTI---------KAWECDTGYCVKTFPGHSEWVRMVRVNQDGT  248 (406)
T ss_pred             HHHH-HHHHHHhcCcccceeeEEEEecCCeeeecccccce---------eEEecccceeEEeccCchHhEEEEEecCCee
Confidence            8763 22344344556677889999999999988777763         33343333  222222233345578889998


Q ss_pred             EEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCC---------------CeEEEEecCCCCCCCCCcEEEEEE
Q 004971          432 RIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVR---------------EAVVYTSGGPEFASESSEVDIISI  492 (721)
Q Consensus       432 ~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg---------------~~la~~~~~~~~~~~~~~~~i~~~  492 (721)
                      .+|..+ +..|.+|-+.++..+.+.   ...+..++|.|..               +.+...       ..++.+++|++
T Consensus       249 i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~-------SrDktIk~wdv  321 (406)
T KOG0295|consen  249 IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG-------SRDKTIKIWDV  321 (406)
T ss_pred             EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee-------cccceEEEEec
Confidence            888774 778999999888433222   2233344444322               233333       35789999999


Q ss_pred             EccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEE
Q 004971          493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWI  572 (721)
Q Consensus       493 ~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l  572 (721)
                      .+..     .+-.|..+...+...+|+|.|++|+...+   +..|.+||+.+++.  ++.+..++..+..+.|..+--++
T Consensus       322 ~tg~-----cL~tL~ghdnwVr~~af~p~Gkyi~ScaD---Dktlrvwdl~~~~c--mk~~~ah~hfvt~lDfh~~~p~V  391 (406)
T KOG0295|consen  322 STGM-----CLFTLVGHDNWVRGVAFSPGGKYILSCAD---DKTLRVWDLKNLQC--MKTLEAHEHFVTSLDFHKTAPYV  391 (406)
T ss_pred             cCCe-----EEEEEecccceeeeeEEcCCCeEEEEEec---CCcEEEEEecccee--eeccCCCcceeEEEecCCCCceE
Confidence            8854     67788888888999999999999999887   88999999998886  77777777777888888777666


Q ss_pred             EEEEcc
Q 004971          573 AFASDR  578 (721)
Q Consensus       573 ~~~~~~  578 (721)
                      +.++-+
T Consensus       392 vTGsVd  397 (406)
T KOG0295|consen  392 VTGSVD  397 (406)
T ss_pred             Eecccc
Confidence            666554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=2.4e-09  Score=101.57  Aligned_cols=267  Identities=12%  Similarity=0.111  Sum_probs=168.6

Q ss_pred             ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcce
Q 004971          322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQ  401 (721)
Q Consensus       322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~  401 (721)
                      .....||+ -|.+||...     .++++.+||+.|-....+  +..|-..+.+++||+||+.|+..+.+..         
T Consensus        26 a~~~~Fs~-~G~~lAvGc-----~nG~vvI~D~~T~~iar~--lsaH~~pi~sl~WS~dgr~LltsS~D~s---------   88 (405)
T KOG1273|consen   26 AECCQFSR-WGDYLAVGC-----ANGRVVIYDFDTFRIARM--LSAHVRPITSLCWSRDGRKLLTSSRDWS---------   88 (405)
T ss_pred             cceEEecc-Ccceeeeec-----cCCcEEEEEccccchhhh--hhccccceeEEEecCCCCEeeeecCCce---------
Confidence            56788999 999999843     556699999998763222  3445556788999999999998776665         


Q ss_pred             eEEEeccCCC-CcceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEeec-------CceeeEEcCCCCeE
Q 004971          402 LLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFK-------NAFSTVWDPVREAV  471 (721)
Q Consensus       402 l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~~~-------~~~~~~~spdg~~l  471 (721)
                      +.++++..+. ..-..+........|+|-.+..+++  -+..-++.++..+..+.|...       ......|.+.|+++
T Consensus        89 i~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yI  168 (405)
T KOG1273|consen   89 IKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYI  168 (405)
T ss_pred             eEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEE
Confidence            4555654442 1112233445567888866554444  355567777766665555511       12234588899999


Q ss_pred             EEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCC----Ccc
Q 004971          472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG----GEG  547 (721)
Q Consensus       472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~----g~~  547 (721)
                      +...       ..+.+.+|+...-.-   ....+++.. ..+.+..++..|++|++.+.   ++-|+.|++..    |+.
T Consensus       169 itGt-------sKGkllv~~a~t~e~---vas~rits~-~~IK~I~~s~~g~~liiNts---DRvIR~ye~~di~~~~r~  234 (405)
T KOG1273|consen  169 ITGT-------SKGKLLVYDAETLEC---VASFRITSV-QAIKQIIVSRKGRFLIINTS---DRVIRTYEISDIDDEGRD  234 (405)
T ss_pred             EEec-------CcceEEEEecchhee---eeeeeechh-eeeeEEEEeccCcEEEEecC---CceEEEEehhhhcccCcc
Confidence            8875       456677766554320   111223321 35667899999999999887   77788887641    110


Q ss_pred             cceEECcC-----CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEE
Q 004971          548 YGLHRLTE-----GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI  622 (721)
Q Consensus       548 ~~~~~l~~-----~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l  622 (721)
                      ..+.....     +...-....||-||.+|+.++...      -.||+|.-..|.+.++.....+...-.+.|.|-.-.|
T Consensus       235 ~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~a------HaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i  308 (405)
T KOG1273|consen  235 GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARA------HALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPII  308 (405)
T ss_pred             CCcChhHHHHHHHhhhhhhheeecCCccEEEeccccc------eeEEEEecCCcceeeeecCCchhheeecccccceeee
Confidence            00111100     011124578999999998877553      3899999999999888753222344567788865544


Q ss_pred             EEE
Q 004971          623 VFT  625 (721)
Q Consensus       623 ~~~  625 (721)
                      +..
T Consensus       309 ~si  311 (405)
T KOG1273|consen  309 ASI  311 (405)
T ss_pred             eec
Confidence            433

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.20  E-value=5e-09  Score=99.51  Aligned_cols=257  Identities=12%  Similarity=0.068  Sum_probs=164.6

Q ss_pred             ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCC
Q 004971          372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDG  448 (721)
Q Consensus       372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~  448 (721)
                      ..+..||+.|.+|+....++.         +.++++.+-  ...+.........++||+||+.|...+ +..+.+||+..
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~---------vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~   96 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGR---------VVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK   96 (405)
T ss_pred             cceEEeccCcceeeeeccCCc---------EEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence            457899999999998766555         455555432  222222223345689999999998885 78899999987


Q ss_pred             Cce-EEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC--CCCc---ceEEccC
Q 004971          449 SNR-RQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG--KNNA---FPSVSPD  521 (721)
Q Consensus       449 g~~-~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~--~~~~---~~~~SpD  521 (721)
                      |.+ +++. +..+....|.|-.+..++++.      -+....+..++..      ....|....  ....   ...|.+-
T Consensus        97 gs~l~rirf~spv~~~q~hp~k~n~~va~~------~~~sp~vi~~s~~------~h~~Lp~d~d~dln~sas~~~fdr~  164 (405)
T KOG1273|consen   97 GSPLKRIRFDSPVWGAQWHPRKRNKCVATI------MEESPVVIDFSDP------KHSVLPKDDDGDLNSSASHGVFDRR  164 (405)
T ss_pred             CCceeEEEccCccceeeeccccCCeEEEEE------ecCCcEEEEecCC------ceeeccCCCccccccccccccccCC
Confidence            774 4444 778889999997776666652      1222333333321      333443332  1222   2358899


Q ss_pred             CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC------
Q 004971          522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG------  595 (721)
Q Consensus       522 g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~------  595 (721)
                      |++|+....   .+.|.++|..+-+...-.+++. ...+.++.++-.|+.|++-..+.       .|..|++..      
T Consensus       165 g~yIitGts---KGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDR-------vIR~ye~~di~~~~r  233 (405)
T KOG1273|consen  165 GKYIITGTS---KGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDR-------VIRTYEISDIDDEGR  233 (405)
T ss_pred             CCEEEEecC---cceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCc-------eEEEEehhhhcccCc
Confidence            999998876   6789999988766422223332 23457889999999999988774       788887641      


Q ss_pred             -CceEEeee---cCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCC--CC
Q 004971          596 -TGLRKLIQ---SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE--DG  669 (721)
Q Consensus       596 -~~~~~l~~---~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~--~~  669 (721)
                       +++...-.   .-..-.-....||.||.|++..+.+..                .||+|....|.+.++-.+..+  -.
T Consensus       234 ~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aH----------------aLYIWE~~~GsLVKILhG~kgE~l~  297 (405)
T KOG1273|consen  234 DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAH----------------ALYIWEKSIGSLVKILHGTKGEELL  297 (405)
T ss_pred             cCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccce----------------eEEEEecCCcceeeeecCCchhhee
Confidence             11111000   000112245789999999987775443                499999988988766654432  24


Q ss_pred             CceecCC
Q 004971          670 TPAWGPR  676 (721)
Q Consensus       670 ~~~~sp~  676 (721)
                      +..|.|.
T Consensus       298 DV~whp~  304 (405)
T KOG1273|consen  298 DVNWHPV  304 (405)
T ss_pred             ecccccc
Confidence            5778885

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=6.3e-08  Score=99.32  Aligned_cols=312  Identities=15%  Similarity=0.167  Sum_probs=195.7

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC-CCCCc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST-REDGN  399 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~-~~~~~  399 (721)
                      .+...++|+ +|+.++|...      ..+++++..++. ..+...   ......+.|||-|.+|..-....... .....
T Consensus        36 ~~~v~~~S~-~G~lfA~~~~------~~v~i~~~~~~~-~~lt~~---~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~  104 (566)
T KOG2315|consen   36 PCNVFAYSN-NGRLFAYSDN------QVVKVFEIATLK-VVLCVE---LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASN  104 (566)
T ss_pred             cceeEEEcC-CCcEEEEEcC------CeEEEEEccCCc-EEEEec---cceeeeeeecccccccccccccccccCCCCCC
Confidence            356778999 9999998542      238899988875 233322   22667889999999886532211111 11111


Q ss_pred             ceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCc--eEEEeecCceeeEEcCCCCeEEEEe
Q 004971          400 NQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSN--RRQVYFKNAFSTVWDPVREAVVYTS  475 (721)
Q Consensus       400 ~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~--~~~l~~~~~~~~~~spdg~~la~~~  475 (721)
                      ..+.+++..+...  .+..-...+..+.||+|....+....+.++.+++.+-.  ...|....+..+.+||-+..-.++.
T Consensus       105 pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAv  184 (566)
T KOG2315|consen  105 PNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAV  184 (566)
T ss_pred             CceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEE
Confidence            3344444443211  11111122357899999987777788899999987633  2344466788899998765444433


Q ss_pred             cCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC---CCCcceEEccCCCEEEEEEeeC---------CceeEEEEECC
Q 004971          476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG---KNNAFPSVSPDGKWIVFRSTRT---------GYKNLYIMDAE  543 (721)
Q Consensus       476 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~SpDg~~l~~~s~~~---------g~~~l~~~d~~  543 (721)
                      .-+.-......++||.+...+.     -..+....   ..-..+.|.+-|.-|++....+         |...||+++.+
T Consensus       185 yvPe~kGaPa~vri~~~~~~~~-----~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~  259 (566)
T KOG2315|consen  185 YVPEKKGAPASVRIYKYPEEGQ-----HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ  259 (566)
T ss_pred             EccCCCCCCcEEEEeccccccc-----cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec
Confidence            3333334456788888874331     11121111   1223468998888777664321         56789999998


Q ss_pred             CCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEE
Q 004971          544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV  623 (721)
Q Consensus       544 ~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~  623 (721)
                      +.+.  ...|. ..+.+.++.|+|+|+.+++...-.     ...+-++|+.+.-...+    ..+.-+.+.|+|.|++|+
T Consensus       260 g~s~--~V~L~-k~GPVhdv~W~~s~~EF~VvyGfM-----PAkvtifnlr~~~v~df----~egpRN~~~fnp~g~ii~  327 (566)
T KOG2315|consen  260 GESV--SVPLL-KEGPVHDVTWSPSGREFAVVYGFM-----PAKVTIFNLRGKPVFDF----PEGPRNTAFFNPHGNIIL  327 (566)
T ss_pred             CceE--EEecC-CCCCceEEEECCCCCEEEEEEecc-----cceEEEEcCCCCEeEeC----CCCCccceEECCCCCEEE
Confidence            4442  44444 345678999999999998888653     34888999877432222    456678899999999999


Q ss_pred             EEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCC-CCCceecCC
Q 004971          624 FTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE-DGTPAWGPR  676 (721)
Q Consensus       624 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~-~~~~~~sp~  676 (721)
                      +++..+-              .+++-+||..+  .+.|...... -.-..|+|+
T Consensus       328 lAGFGNL--------------~G~mEvwDv~n--~K~i~~~~a~~tt~~eW~Pd  365 (566)
T KOG2315|consen  328 LAGFGNL--------------PGDMEVWDVPN--RKLIAKFKAANTTVFEWSPD  365 (566)
T ss_pred             EeecCCC--------------CCceEEEeccc--hhhccccccCCceEEEEcCC
Confidence            9887652              35799999877  3344443322 245799997

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.16  E-value=5.4e-10  Score=109.73  Aligned_cols=261  Identities=13%  Similarity=0.093  Sum_probs=161.9

Q ss_pred             ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEE
Q 004971          272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIEL  351 (721)
Q Consensus       272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l  351 (721)
                      ..|.++...+++  ...+..+.+|.+......       ....+.+....+..+.+.+ ++++++..++     +..+++
T Consensus       181 v~~l~~sdtlat--gg~Dr~Ik~W~v~~~k~~-------~~~tLaGs~g~it~~d~d~-~~~~~iAas~-----d~~~r~  245 (459)
T KOG0288|consen  181 VEFLRNSDTLAT--GGSDRIIKLWNVLGEKSE-------LISTLAGSLGNITSIDFDS-DNKHVIAASN-----DKNLRL  245 (459)
T ss_pred             eEEccCcchhhh--cchhhhhhhhhcccchhh-------hhhhhhccCCCcceeeecC-CCceEEeecC-----CCceee
Confidence            356666444442  233567778865444321       2333444455678889999 9998877543     344899


Q ss_pred             EECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec-ccCCCCceeCcCC
Q 004971          352 FDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF-RFDGSFPSFSPKG  430 (721)
Q Consensus       352 ~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~SpDG  430 (721)
                      |++...+  ....+.+|...+....|.-...+++..+.+...         -.+++....-.-+.+ ......+..+  +
T Consensus       246 Wnvd~~r--~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRti---------K~WDl~k~~C~kt~l~~S~cnDI~~~--~  312 (459)
T KOG0288|consen  246 WNVDSLR--LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTI---------KLWDLQKAYCSKTVLPGSQCNDIVCS--I  312 (459)
T ss_pred             eeccchh--hhhhhcccccceeeehhhccccceeeccccchh---------hhhhhhhhheeccccccccccceEec--c
Confidence            9998776  445556677777777777665555554444442         233332221000000 0111122222  1


Q ss_pred             CEEEEE--eCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc
Q 004971          431 DRIAFV--EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL  506 (721)
Q Consensus       431 ~~la~~--~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l  506 (721)
                       ..++.  .+..|..||..++......  .+.+.++..+++|..|...+       .+..+.+.++....     ....+
T Consensus       313 -~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsss-------RDdtl~viDlRt~e-----I~~~~  379 (459)
T KOG0288|consen  313 -SDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSS-------RDDTLKVIDLRTKE-----IRQTF  379 (459)
T ss_pred             -eeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeec-------CCCceeeeeccccc-----EEEEe
Confidence             12222  3677999998877754433  67889999999999999886       45667776665432     22223


Q ss_pred             ccCC----CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC--CCcCceeeEEccCCCEEEEEEcc
Q 004971          507 TTNG----KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE--GPWSDTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       507 ~~~~----~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~--~~~~~~~~~~SpDG~~l~~~~~~  578 (721)
                      +...    .......||||+.|++..+.   +..||+|++.+++.  ...+..  ....+..++|+|-|+.|+.++.+
T Consensus       380 sA~g~k~asDwtrvvfSpd~~YvaAGS~---dgsv~iW~v~tgKl--E~~l~~s~s~~aI~s~~W~~sG~~Llsadk~  452 (459)
T KOG0288|consen  380 SAEGFKCASDWTRVVFSPDGSYVAAGSA---DGSVYIWSVFTGKL--EKVLSLSTSNAAITSLSWNPSGSGLLSADKQ  452 (459)
T ss_pred             eccccccccccceeEECCCCceeeeccC---CCcEEEEEccCceE--EEEeccCCCCcceEEEEEcCCCchhhcccCC
Confidence            3222    23455899999999999887   88999999999985  333332  23247899999999999887765

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.16  E-value=1.4e-08  Score=106.30  Aligned_cols=148  Identities=16%  Similarity=0.125  Sum_probs=102.5

Q ss_pred             ceEEcccCCCCCcceEEccCCCEEEEEEeeC--CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971          502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT--GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD  579 (721)
Q Consensus       502 ~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~--g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~  579 (721)
                      +.++|-.|...++.++.||+|+.|+......  ....|++|+..+-..  ...|..+...++.++|||||++|+..+.+.
T Consensus       517 Ev~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~--~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR  594 (764)
T KOG1063|consen  517 EVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ--VQELEGHSLTVTRLAFSPDGRYLLSVSRDR  594 (764)
T ss_pred             hhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh--hheecccceEEEEEEECCCCcEEEEeecCc
Confidence            5667778888889999999999998775432  456899999876553  556788888899999999999999988774


Q ss_pred             CCCCCceeEEEEecCCCceE--E--eeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971          580 NPGSGSFEMYLIHPNGTGLR--K--LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       580 ~~~~~~~~i~~~d~~~~~~~--~--l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                             .+-+|.......-  .  ... .|..-+....|+||+++++.++.+..                 +.+|....
T Consensus       595 -------t~sl~~~~~~~~~e~~fa~~k-~HtRIIWdcsW~pde~~FaTaSRDK~-----------------VkVW~~~~  649 (764)
T KOG1063|consen  595 -------TVSLYEVQEDIKDEFRFACLK-AHTRIIWDCSWSPDEKYFATASRDKK-----------------VKVWEEPD  649 (764)
T ss_pred             -------eEEeeeeecccchhhhhcccc-ccceEEEEcccCcccceeEEecCCce-----------------EEEEeccC
Confidence                   6666665332111  1  011 25555677889999999888877764                 66666544


Q ss_pred             CCeEEec-----cCCCCCCCceecCC
Q 004971          656 SDLKRLT-----QNSFEDGTPAWGPR  676 (721)
Q Consensus       656 ~~~~~lt-----~~~~~~~~~~~sp~  676 (721)
                      ...+.+.     ..+..+++.+|.|.
T Consensus       650 ~~d~~i~~~a~~~~~~aVTAv~~~~~  675 (764)
T KOG1063|consen  650 LRDKYISRFACLKFSLAVTAVAYLPV  675 (764)
T ss_pred             chhhhhhhhchhccCCceeeEEeecc
Confidence            4222222     24455666677663

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.13  E-value=1.6e-07  Score=98.52  Aligned_cols=323  Identities=13%  Similarity=0.100  Sum_probs=188.1

Q ss_pred             CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCC-EEEEEEeeCCCCCCCCccee
Q 004971          324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSS-RVGYHKCRGGSTREDGNNQL  402 (721)
Q Consensus       324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~~~~~~~~l  402 (721)
                      .+++.| +.+.++.+.   |+.+..|.++--.+++...+....+|...+..++|..-+. .++.++...+..     .+|
T Consensus       150 cL~~~~-~~~~~lla~---Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~y-----IRi  220 (764)
T KOG1063|consen  150 CLAALK-NNKTFLLAC---GGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRY-----IRI  220 (764)
T ss_pred             HHhhhc-cCCcEEEEe---cCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceE-----EEE
Confidence            445566 666555543   4455556777655666677777888899999999988766 555444433321     455


Q ss_pred             EEEeccCCCC---------------------cce----------ecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCc
Q 004971          403 LLENIKSPLP---------------------DIS----------LFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSN  450 (721)
Q Consensus       403 ~~~~~~~~~~---------------------~~~----------~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~  450 (721)
                      |...+.+...                     .+.          ...--+..+.|+|++..|... .+..+.+|..+...
T Consensus       221 W~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~t  300 (764)
T KOG1063|consen  221 WRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENT  300 (764)
T ss_pred             EEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCcc
Confidence            5544433111                     000          000012246899999666555 57888888876543


Q ss_pred             e--E---EEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc
Q 004971          451 R--R---QVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP  520 (721)
Q Consensus       451 ~--~---~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp  520 (721)
                      -  .   ++-     .++-....|+|++..++.-+       ..+..++|. +.+.. .......+..+-..+..++|+|
T Consensus       301 GiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g-------~~Gg~hlWk-t~d~~-~w~~~~~iSGH~~~V~dv~W~p  371 (764)
T KOG1063|consen  301 GIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHG-------RTGGFHLWK-TKDKT-FWTQEPVISGHVDGVKDVDWDP  371 (764)
T ss_pred             ceEEEEEEeecccccccceeeEEEcCCCCEEEEec-------ccCcEEEEe-ccCcc-ceeeccccccccccceeeeecC
Confidence            1  1   121     12234678999997776654       457888888 22211 1112223344446788899999


Q ss_pred             CCCEEEEEEeeCC-----------------ceeE--------------------------EEEEC---------------
Q 004971          521 DGKWIVFRSTRTG-----------------YKNL--------------------------YIMDA---------------  542 (721)
Q Consensus       521 Dg~~l~~~s~~~g-----------------~~~l--------------------------~~~d~---------------  542 (721)
                      .|.+|+.++.+..                 ..+|                          ++++.               
T Consensus       372 sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~  451 (764)
T KOG1063|consen  372 SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKC  451 (764)
T ss_pred             CCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCcc
Confidence            9999887764310                 0000                          00000               


Q ss_pred             ----------------------------CCCcc----c---------------------------ceEECcCCCcCceee
Q 004971          543 ----------------------------EGGEG----Y---------------------------GLHRLTEGPWSDTMC  563 (721)
Q Consensus       543 ----------------------------~~g~~----~---------------------------~~~~l~~~~~~~~~~  563 (721)
                                                  ++|..    .                           ++..|..+.+.+..+
T Consensus       452 ~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l  531 (764)
T KOG1063|consen  452 FKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYAL  531 (764)
T ss_pred             ccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEE
Confidence                                        00100    0                           011122334456778


Q ss_pred             EEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCC
Q 004971          564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQ  643 (721)
Q Consensus       564 ~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~  643 (721)
                      +.||+|+.||.+.....  .....|++|+..+-...+... +|.-.+..++|||||++|+..+.+....           
T Consensus       532 ~~s~~gnliASaCKS~~--~ehAvI~lw~t~~W~~~~~L~-~HsLTVT~l~FSpdg~~LLsvsRDRt~s-----------  597 (764)
T KOG1063|consen  532 AISPTGNLIASACKSSL--KEHAVIRLWNTANWLQVQELE-GHSLTVTRLAFSPDGRYLLSVSRDRTVS-----------  597 (764)
T ss_pred             EecCCCCEEeehhhhCC--ccceEEEEEeccchhhhheec-ccceEEEEEEECCCCcEEEEeecCceEE-----------
Confidence            99999998887654321  245689999987765555333 3777889999999999999888876542           


Q ss_pred             CCccEEEEEcCCCCe---EEeccCCCCCCCceecCCcCCccc
Q 004971          644 PYGEIFKIKLDGSDL---KRLTQNSFEDGTPAWGPRFIRPVD  682 (721)
Q Consensus       644 ~~~~l~~~d~~~~~~---~~lt~~~~~~~~~~~sp~~l~~~~  682 (721)
                          ||-.--+-...   ..+..|..-+.+..|+|+-..++.
T Consensus       598 ----l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaT  635 (764)
T KOG1063|consen  598 ----LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFAT  635 (764)
T ss_pred             ----eeeeecccchhhhhccccccceEEEEcccCcccceeEE
Confidence                54432111111   235556666788999997544443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=3.1e-08  Score=101.50  Aligned_cols=332  Identities=14%  Similarity=0.126  Sum_probs=193.1

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeee
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTD  250 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~  250 (721)
                      ++  +|+.+++..+.           .++..+...+. ..++......+...|||-|.+|..=... .-+... ......
T Consensus        43 S~--~G~lfA~~~~~-----------~v~i~~~~~~~-~~lt~~~~~~~~L~fSP~g~yL~T~e~~-~i~~~~-~~~~pn  106 (566)
T KOG2315|consen   43 SN--NGRLFAYSDNQ-----------VVKVFEIATLK-VVLCVELKKTYDLLFSPKGNYLLTWEPW-AIYGPK-NASNPN  106 (566)
T ss_pred             cC--CCcEEEEEcCC-----------eEEEEEccCCc-EEEEeccceeeeeeeccccccccccccc-ccccCC-CCCCCc
Confidence            78  89988886554           45555544443 3333332345555899999998752210 001111 112356


Q ss_pred             EEEEEcCCCceeEEEe--ccC-CcceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCcee
Q 004971          251 IYIFLTRDGTQRVKIV--ENG-GWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPAT  327 (721)
Q Consensus       251 i~~~d~~~g~~~~l~~--~~~-~~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (721)
                      +-+|+.+++..+--..  ... -.++|+.|..+.+ +..  .+.+.+|......+        ....+.  ...+....+
T Consensus       107 ~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv--~nev~f~~~~~f~~--------~~~kl~--~~~i~~f~l  173 (566)
T KOG2315|consen  107 VLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLV--SNEVQFYDLGSFKT--------IQHKLS--VSGITMLSL  173 (566)
T ss_pred             eeeeeeccceehhheehhhhcCcccccccchhhhh-hhh--cceEEEEecCCccc--------eeeeee--ccceeeEEe
Confidence            6677777754332221  111 2568998854322 222  34455664333221        122222  224467778


Q ss_pred             ecCCC--CEEEEEEecCCCCeeeEEEEECCCCceEEee-cccCCCCcccCcEEcCCCCEEEEEEeeCC---CCCCCCcce
Q 004971          328 SPGNN--KFIAVATRRPTSSYRHIELFDLVKNKFIELT-RFVSPKTHHLNPFISPDSSRVGYHKCRGG---STREDGNNQ  401 (721)
Q Consensus       328 sp~dG--~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~-~~~~~~~~~~~~~~Spdg~~l~~~~~~~~---~~~~~~~~~  401 (721)
                      || .+  .+|++.....++....+++|...-+...... ...--......+.|.+-|..|+......-   ..-.-+...
T Consensus       174 Sp-gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~  252 (566)
T KOG2315|consen  174 SP-GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQT  252 (566)
T ss_pred             cC-CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccce
Confidence            88 53  4666665666667778888876532221211 11111233446789998887665433221   112223367


Q ss_pred             eEEEeccCCCCcceec-ccCCCCceeCcCCCEEEEE---eCCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecC
Q 004971          402 LLLENIKSPLPDISLF-RFDGSFPSFSPKGDRIAFV---EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGG  477 (721)
Q Consensus       402 l~~~~~~~~~~~~~~~-~~~~~~~~~SpDG~~la~~---~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~  477 (721)
                      +++..+.+....+.+. .+.+..+.|+|+|+.++++   -...+.++|+.+...-.+..+.-..+.|+|.|+.|+++.-+
T Consensus       253 Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFG  332 (566)
T KOG2315|consen  253 LYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFG  332 (566)
T ss_pred             EEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecC
Confidence            8888887543333333 2334568999999988877   25678889987755444446667789999999999999854


Q ss_pred             CCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeC---CceeEEEEECCC
Q 004971          478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRT---GYKNLYIMDAEG  544 (721)
Q Consensus       478 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~---g~~~l~~~d~~~  544 (721)
                          .-.+.+.||++...        +.|.... .....+.|+|||++++.+....   -++.+.+|+..+
T Consensus       333 ----NL~G~mEvwDv~n~--------K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  333 ----NLPGDMEVWDVPNR--------KLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             ----CCCCceEEEeccch--------hhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence                36789999998642        2333332 3445689999999999886521   244566777653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.13  E-value=5.7e-08  Score=104.85  Aligned_cols=304  Identities=13%  Similarity=0.074  Sum_probs=178.2

Q ss_pred             CCCEEEEEEecCCCCeeeEEEEECC--CCce-EEeecccC---CC--CcccCcEEcCCCCEEEEEEeeCCCCCCCCccee
Q 004971          331 NNKFIAVATRRPTSSYRHIELFDLV--KNKF-IELTRFVS---PK--THHLNPFISPDSSRVGYHKCRGGSTREDGNNQL  402 (721)
Q Consensus       331 dG~~la~~~~~~g~~~~~l~l~dl~--tg~~-~~l~~~~~---~~--~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l  402 (721)
                      .|.+.+|.....+.....+++....  .++. +.+.....   ..  .......+||||++|+|....++...    ..+
T Consensus        77 ~g~~~y~~~~~~~~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~----~~l  152 (414)
T PF02897_consen   77 RGGYYYYSRNQGGKNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEW----YTL  152 (414)
T ss_dssp             ETTEEEEEEE-SS-SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSE----EEE
T ss_pred             ECCeEEEEEEcCCCceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCce----EEE
Confidence            5566776555544444445555554  2332 33322111   11  12235789999999999877766432    567


Q ss_pred             EEEeccCCCCccee-cccCCCCceeCcCCCEEEEEe------------CCcEEEEECCCCce--EEEe--ec--C-ceee
Q 004971          403 LLENIKSPLPDISL-FRFDGSFPSFSPKGDRIAFVE------------FPGVYVVNSDGSNR--RQVY--FK--N-AFST  462 (721)
Q Consensus       403 ~~~~~~~~~~~~~~-~~~~~~~~~~SpDG~~la~~~------------~~~l~v~d~~~g~~--~~l~--~~--~-~~~~  462 (721)
                      ++.++.++...... .......+.|++||+.++|..            ...|+.+.+.+...  ..|.  ..  . ...+
T Consensus       153 ~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~  232 (414)
T PF02897_consen  153 RVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSV  232 (414)
T ss_dssp             EEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEE
T ss_pred             EEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEE
Confidence            88888776221111 111222389999999999982            33489999877754  3555  12  2 3478


Q ss_pred             EEcCCCCeEEEEecCCCCCCCCC-cEEEEEEEccCC-CCccceEEcccCCCCCcceEEccCCCEEEEEEeeC-CceeEEE
Q 004971          463 VWDPVREAVVYTSGGPEFASESS-EVDIISINVDDV-DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT-GYKNLYI  539 (721)
Q Consensus       463 ~~spdg~~la~~~~~~~~~~~~~-~~~i~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~-g~~~l~~  539 (721)
                      ..|+|+++|++.+.      ... ...+|.++.... ......+.+...........-.. |..+++.++.+ ...+|+.
T Consensus       233 ~~s~d~~~l~i~~~------~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~  305 (414)
T PF02897_consen  233 SRSKDGRYLFISSS------SGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVA  305 (414)
T ss_dssp             EE-TTSSEEEEEEE------SSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEE
T ss_pred             EecCcccEEEEEEE------ccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEE
Confidence            89999999998764      223 478888887652 00124555555432222222222 66777776654 4569999


Q ss_pred             EECCCCcccceE-ECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC-CCceEEeeecCCCCCcCCeEECC
Q 004971          540 MDAEGGEGYGLH-RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN-GTGLRKLIQSGSAGRANHPYFSP  617 (721)
Q Consensus       540 ~d~~~g~~~~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~-~~~~~~l~~~~~~~~~~~~~~Sp  617 (721)
                      ++++........ .+........--.++..+++|++.....    +...|+++++. +.....+... ..+.+......+
T Consensus       306 ~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~----~~~~l~v~~~~~~~~~~~~~~p-~~g~v~~~~~~~  380 (414)
T PF02897_consen  306 VDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN----GSSRLRVYDLDDGKESREIPLP-EAGSVSGVSGDF  380 (414)
T ss_dssp             EETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET----TEEEEEEEETT-TEEEEEEESS-SSSEEEEEES-T
T ss_pred             ecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEEC----CccEEEEEECCCCcEEeeecCC-cceEEeccCCCC
Confidence            999877632122 3444333223345566788899888874    78899999999 6555555432 334445556667


Q ss_pred             CCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          618 DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       618 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      ++..+.+....-..             ++.+|.+|+++++.+.+..
T Consensus       381 ~~~~~~~~~ss~~~-------------P~~~y~~d~~t~~~~~~k~  413 (414)
T PF02897_consen  381 DSDELRFSYSSFTT-------------PPTVYRYDLATGELTLLKQ  413 (414)
T ss_dssp             T-SEEEEEEEETTE-------------EEEEEEEETTTTCEEEEEE
T ss_pred             CCCEEEEEEeCCCC-------------CCEEEEEECCCCCEEEEEe
Confidence            88888776654433             4679999999999887753

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=1.3e-08  Score=109.08  Aligned_cols=267  Identities=11%  Similarity=0.061  Sum_probs=180.0

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      ..+|+|..-.+.  .+-+.|.+++|+.....         -+.++..|...++.+.|.| .+...+.     |+++..|.
T Consensus        14 glsFHP~rPwIL--tslHsG~IQlWDYRM~t---------li~rFdeHdGpVRgv~FH~-~qplFVS-----GGDDykIk   76 (1202)
T KOG0292|consen   14 GLSFHPKRPWIL--TSLHSGVIQLWDYRMGT---------LIDRFDEHDGPVRGVDFHP-TQPLFVS-----GGDDYKIK   76 (1202)
T ss_pred             ceecCCCCCEEE--EeecCceeeeehhhhhh---------HHhhhhccCCccceeeecC-CCCeEEe-----cCCccEEE
Confidence            457888733444  24457999999554333         4566677788899999999 8875443     66788899


Q ss_pred             EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCC
Q 004971          351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKG  430 (721)
Q Consensus       351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG  430 (721)
                      +|+.++.+  .+..+.+|-..++...|.+.=-+|+.++++..       .++|-+..+.....++....-+-..+|+|..
T Consensus        77 VWnYk~rr--clftL~GHlDYVRt~~FHheyPWIlSASDDQT-------IrIWNwqsr~~iavltGHnHYVMcAqFhptE  147 (1202)
T KOG0292|consen   77 VWNYKTRR--CLFTLLGHLDYVRTVFFHHEYPWILSASDDQT-------IRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE  147 (1202)
T ss_pred             EEecccce--ehhhhccccceeEEeeccCCCceEEEccCCCe-------EEEEeccCCceEEEEecCceEEEeeccCCcc
Confidence            99998766  55666777888899999999999998887776       4455544332222222221112235889988


Q ss_pred             CEEEEEe-CCcEEEEECCCCceEE-----------------------------Ee---ecCceeeEEcCCCCeEEEEecC
Q 004971          431 DRIAFVE-FPGVYVVNSDGSNRRQ-----------------------------VY---FKNAFSTVWDPVREAVVYTSGG  477 (721)
Q Consensus       431 ~~la~~~-~~~l~v~d~~~g~~~~-----------------------------l~---~~~~~~~~~spdg~~la~~~~~  477 (721)
                      ..|+.++ +..|.+||+.+-+.+.                             +.   +.++...+|.|.-..|+..+  
T Consensus       148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~--  225 (1202)
T KOG0292|consen  148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA--  225 (1202)
T ss_pred             ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC--
Confidence            7787775 8889999987532111                             11   22455677777766666554  


Q ss_pred             CCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCC
Q 004971          478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP  557 (721)
Q Consensus       478 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~  557 (721)
                           ++..+.+|+++....   -++.....|-.++..+-|+|....|+..++   +..|.+||....+.  +...-...
T Consensus       226 -----DDRqVKlWrmnetKa---WEvDtcrgH~nnVssvlfhp~q~lIlSnsE---DksirVwDm~kRt~--v~tfrren  292 (1202)
T KOG0292|consen  226 -----DDRQVKLWRMNETKA---WEVDTCRGHYNNVSSVLFHPHQDLILSNSE---DKSIRVWDMTKRTS--VQTFRREN  292 (1202)
T ss_pred             -----CcceeeEEEeccccc---eeehhhhcccCCcceEEecCccceeEecCC---CccEEEEecccccc--eeeeeccC
Confidence                 678999999986442   123334455578888999999888887776   78999999986654  44443333


Q ss_pred             cCceeeEEccCCCEEEEEEcc
Q 004971          558 WSDTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       558 ~~~~~~~~SpDG~~l~~~~~~  578 (721)
                      ...+-++-.|..+.++.+.+.
T Consensus       293 dRFW~laahP~lNLfAAgHDs  313 (1202)
T KOG0292|consen  293 DRFWILAAHPELNLFAAGHDS  313 (1202)
T ss_pred             CeEEEEEecCCcceeeeecCC
Confidence            334667888988866665544

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.11  E-value=9.1e-09  Score=99.34  Aligned_cols=271  Identities=14%  Similarity=0.071  Sum_probs=185.1

Q ss_pred             CCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971          316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR  395 (721)
Q Consensus       316 ~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~  395 (721)
                      ..+...+..+++.| .+++++.     |+.++.|.+||+++|+.+.  ...++-..+..+++|+--.+|+.+..++.   
T Consensus       148 ~gHlgWVr~vavdP-~n~wf~t-----gs~DrtikIwDlatg~Lkl--tltGhi~~vr~vavS~rHpYlFs~gedk~---  216 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDP-GNEWFAT-----GSADRTIKIWDLATGQLKL--TLTGHIETVRGVAVSKRHPYLFSAGEDKQ---  216 (460)
T ss_pred             hhccceEEEEeeCC-CceeEEe-----cCCCceeEEEEcccCeEEE--eecchhheeeeeeecccCceEEEecCCCe---
Confidence            34555778889999 8888776     5567789999999998543  23455667888999998888887666554   


Q ss_pred             CCCcceeEEEeccCCCCcceec---ccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe---ecCceeeEEcCCC
Q 004971          396 EDGNNQLLLENIKSPLPDISLF---RFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVR  468 (721)
Q Consensus       396 ~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg  468 (721)
                            +--+|+.... -+..+   -..+..+..+|.-..|+.. .+..+.+||+.+.......   ...+..+.+.|-.
T Consensus       217 ------VKCwDLe~nk-vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d  289 (460)
T KOG0285|consen  217 ------VKCWDLEYNK-VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD  289 (460)
T ss_pred             ------eEEEechhhh-hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC
Confidence                  3334443221 11111   1123345677777666666 4788999999887755444   4466778888777


Q ss_pred             CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc
Q 004971          469 EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY  548 (721)
Q Consensus       469 ~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~  548 (721)
                      -.++..+       .+..+++|++....     ....++.+...+..++..|.-..++.++    ...|..|++..|+. 
T Consensus       290 pqvit~S-------~D~tvrlWDl~agk-----t~~tlt~hkksvral~lhP~e~~fASas----~dnik~w~~p~g~f-  352 (460)
T KOG0285|consen  290 PQVITGS-------HDSTVRLWDLRAGK-----TMITLTHHKKSVRALCLHPKENLFASAS----PDNIKQWKLPEGEF-  352 (460)
T ss_pred             CceEEec-------CCceEEEeeeccCc-----eeEeeecccceeeEEecCCchhhhhccC----CccceeccCCccch-
Confidence            7777765       68999999998765     6678888888888899999877776655    46788999988875 


Q ss_pred             ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee----ecC---CCCCcCCeEECCCCCE
Q 004971          549 GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI----QSG---SAGRANHPYFSPDGKS  621 (721)
Q Consensus       549 ~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~----~~~---~~~~~~~~~~SpDG~~  621 (721)
                       +..+..+...+..++...||- ++.+++.+       .|+.||..+|-..+-.    ..+   ....+...+|...|..
T Consensus       353 -~~nlsgh~~iintl~~nsD~v-~~~G~dng-------~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~r  423 (460)
T KOG0285|consen  353 -LQNLSGHNAIINTLSVNSDGV-LVSGGDNG-------SIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSR  423 (460)
T ss_pred             -hhccccccceeeeeeeccCce-EEEcCCce-------EEEEEecCcCcccccccccccCCccccccceeEEeecccCce
Confidence             556677777777888877763 33444332       7999999887533322    111   1223345567778888


Q ss_pred             EEEEEecCC
Q 004971          622 IVFTSDYGG  630 (721)
Q Consensus       622 l~~~~~~~~  630 (721)
                      |+....+.+
T Consensus       424 lit~eadKt  432 (460)
T KOG0285|consen  424 LITGEADKT  432 (460)
T ss_pred             EEeccCCcc
Confidence            877666654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=9.2e-09  Score=94.95  Aligned_cols=281  Identities=12%  Similarity=0.060  Sum_probs=176.7

Q ss_pred             CCcccCceeecCCCCEEEEEEe--cCCCCeeeEEEEECCCCc-eEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971          319 GLHAFTPATSPGNNKFIAVATR--RPTSSYRHIELFDLVKNK-FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR  395 (721)
Q Consensus       319 ~~~~~~~~~sp~dG~~la~~~~--~~g~~~~~l~l~dl~tg~-~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~  395 (721)
                      ++.-.++.|||.-..+|+.+..  ..-...++|++.++..++ ..+... ........+++||+.-..++++...++   
T Consensus         8 gf~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s-~d~~D~LfdV~Wse~~e~~~~~a~GDG---   83 (311)
T KOG0277|consen    8 GFHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQS-YDTEDGLFDVAWSENHENQVIAASGDG---   83 (311)
T ss_pred             CcccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEe-eecccceeEeeecCCCcceEEEEecCc---
Confidence            3444678888843445655442  222345679999996443 333322 233556778999998776666544333   


Q ss_pred             CCCcceeEEEeccCCCCcceecc---cCCCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe---ecCceeeEEcCC
Q 004971          396 EDGNNQLLLENIKSPLPDISLFR---FDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPV  467 (721)
Q Consensus       396 ~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~---~~~~~~~~~spd  467 (721)
                           .+.+.++..+..++..+.   .++..+.|++-.++....+  ++.|.+|+..-++..+-+   ...+....|||-
T Consensus        84 -----SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~  158 (311)
T KOG0277|consen   84 -----SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPH  158 (311)
T ss_pred             -----eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCC
Confidence                 245555544444443332   3344567777666665553  889999998766644444   345778999996


Q ss_pred             CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc
Q 004971          468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG  547 (721)
Q Consensus       468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~  547 (721)
                      -.-++...      ..++..+||++...+     +...+..+........|+.-...+++.+..  +..|+.||+..-+ 
T Consensus       159 ~~nlfas~------Sgd~~l~lwdvr~~g-----k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v--d~~vr~wDir~~r-  224 (311)
T KOG0277|consen  159 IPNLFASA------SGDGTLRLWDVRSPG-----KFMSIEAHNSEILCCDWSKYNHNVLATGGV--DNLVRGWDIRNLR-  224 (311)
T ss_pred             CCCeEEEc------cCCceEEEEEecCCC-----ceeEEEeccceeEeecccccCCcEEEecCC--CceEEEEehhhcc-
Confidence            55554443      368999999998876     344466666667778899877777776543  6789999998654 


Q ss_pred             cceEECcCCCcCceeeEEccCCCEEE-EEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCC-CCEEEEE
Q 004971          548 YGLHRLTEGPWSDTMCNWSPDGEWIA-FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD-GKSIVFT  625 (721)
Q Consensus       548 ~~~~~l~~~~~~~~~~~~SpDG~~l~-~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpD-G~~l~~~  625 (721)
                      ..+..|..+...+..+.|||--.-|+ .++.+       ..+.+||...+....-+-..|...+..+.||+- +.+++-.
T Consensus       225 ~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD-------mT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~  297 (311)
T KOG0277|consen  225 TPLFELNGHGLAVRKVKFSPHHASLLASASYD-------MTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAST  297 (311)
T ss_pred             ccceeecCCceEEEEEecCcchhhHhhhcccc-------ceEEecccccchhhhhhhhccceEEeccccccccCceeeec
Confidence            23566777778889999999865544 44444       378889886543221111115555667777764 4556655


Q ss_pred             EecC
Q 004971          626 SDYG  629 (721)
Q Consensus       626 ~~~~  629 (721)
                      +-+.
T Consensus       298 gWDe  301 (311)
T KOG0277|consen  298 GWDE  301 (311)
T ss_pred             cccc
Confidence            4444

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.10  E-value=2.7e-08  Score=90.88  Aligned_cols=269  Identities=11%  Similarity=0.061  Sum_probs=172.5

Q ss_pred             EEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971          313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG  392 (721)
Q Consensus       313 ~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~  392 (721)
                      ..+......+..+.+.- ||++.+..     +.+..+++||+..|.  .+....+|+..+...+.+-|...++....+  
T Consensus        11 ~~l~~~qgaV~avryN~-dGnY~ltc-----GsdrtvrLWNp~rg~--liktYsghG~EVlD~~~s~Dnskf~s~GgD--   80 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNV-DGNYCLTC-----GSDRTVRLWNPLRGA--LIKTYSGHGHEVLDAALSSDNSKFASCGGD--   80 (307)
T ss_pred             eeecccccceEEEEEcc-CCCEEEEc-----CCCceEEeecccccc--eeeeecCCCceeeeccccccccccccCCCC--
Confidence            33344455667788888 99987762     356679999999887  555667778888888888888877654332  


Q ss_pred             CCCCCCcceeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe-----ecCceeeEE
Q 004971          393 STREDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY-----FKNAFSTVW  464 (721)
Q Consensus       393 ~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~-----~~~~~~~~~  464 (721)
                             ..+++++..++  ...+.........+.|..+.+.++..+ +..+.+||-.+....++.     ...+.++..
T Consensus        81 -------k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v  153 (307)
T KOG0316|consen   81 -------KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV  153 (307)
T ss_pred             -------ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe
Confidence                   23666676655  223333344455678887776555554 788999999776644443     334555544


Q ss_pred             cCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCC
Q 004971          465 DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG  544 (721)
Q Consensus       465 spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~  544 (721)
                      +  +..|+..+       .+++++.|++.....       .....+..+....||+||+.++..+.   +..|.++|-.+
T Consensus       154 ~--~heIvaGS-------~DGtvRtydiR~G~l-------~sDy~g~pit~vs~s~d~nc~La~~l---~stlrLlDk~t  214 (307)
T KOG0316|consen  154 A--EHEIVAGS-------VDGTVRTYDIRKGTL-------SSDYFGHPITSVSFSKDGNCSLASSL---DSTLRLLDKET  214 (307)
T ss_pred             c--ccEEEeec-------cCCcEEEEEeeccee-------ehhhcCCcceeEEecCCCCEEEEeec---cceeeecccch
Confidence            3  33444443       578899998876431       11112246778899999999998887   78999999999


Q ss_pred             CcccceEECcCCCc--CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCC-cCCeEECCCCCE
Q 004971          545 GEGYGLHRLTEGPW--SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR-ANHPYFSPDGKS  621 (721)
Q Consensus       545 g~~~~~~~l~~~~~--~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~~~SpDG~~  621 (721)
                      |+.  +.....+..  .-....++....+++.++.++       .+|.||+...+...-+.. +... +.++.+.|.-..
T Consensus       215 Gkl--L~sYkGhkn~eykldc~l~qsdthV~sgSEDG-------~Vy~wdLvd~~~~sk~~~-~~~v~v~dl~~hp~~~~  284 (307)
T KOG0316|consen  215 GKL--LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG-------KVYFWDLVDETQISKLSV-VSTVIVTDLSCHPTMDD  284 (307)
T ss_pred             hHH--HHHhcccccceeeeeeeecccceeEEeccCCc-------eEEEEEeccceeeeeecc-CCceeEEeeecccCccc
Confidence            984  322222221  113455666566666666664       899999987654433332 2222 567777777655


Q ss_pred             EEEEEe
Q 004971          622 IVFTSD  627 (721)
Q Consensus       622 l~~~~~  627 (721)
                      ++.+..
T Consensus       285 f~~A~~  290 (307)
T KOG0316|consen  285 FITATG  290 (307)
T ss_pred             eeEecC
Confidence            554443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.10  E-value=9.1e-08  Score=86.63  Aligned_cols=272  Identities=14%  Similarity=0.100  Sum_probs=167.3

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEE----EEECCCCce-------EEeecccCCCCcccCcEEcCCCCEEEEEEe
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIE----LFDLVKNKF-------IELTRFVSPKTHHLNPFISPDSSRVGYHKC  389 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~----l~dl~tg~~-------~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~  389 (721)
                      .+..++|.| .|...++.++.   ..-+|-    +.|+..+-.       ....+...+.+.+.+.+|||+|+.|+..+.
T Consensus        34 airav~fhp-~g~lyavgsns---kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn  109 (350)
T KOG0641|consen   34 AIRAVAFHP-AGGLYAVGSNS---KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN  109 (350)
T ss_pred             heeeEEecC-CCceEEeccCC---ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence            457889999 99866664332   222222    234422211       111223445777889999999999998766


Q ss_pred             eCCCCCCCCcceeEEEecc-------CCCCcceecccCCCCceeCcC----CCEEEEE--eCCcEEEEECCCCceEEEee
Q 004971          390 RGGSTREDGNNQLLLENIK-------SPLPDISLFRFDGSFPSFSPK----GDRIAFV--EFPGVYVVNSDGSNRRQVYF  456 (721)
Q Consensus       390 ~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~SpD----G~~la~~--~~~~l~v~d~~~g~~~~l~~  456 (721)
                      +...         -+..+.       ++..++.......+.++|-.|    |..|+..  ++..||+-|...|+.-+...
T Consensus       110 dk~i---------k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s  180 (350)
T KOG0641|consen  110 DKTI---------KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS  180 (350)
T ss_pred             CceE---------EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence            6552         222221       222233333344455555322    3334444  46778988887777544432


Q ss_pred             ---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-------CCCcceEEccCCCEEE
Q 004971          457 ---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-------KNNAFPSVSPDGKWIV  526 (721)
Q Consensus       457 ---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~SpDg~~l~  526 (721)
                         +.+. .-++-+|-.++..+       .+..+++|++..+.     .+..+....       ..+..++..|.|+.|+
T Consensus       181 ghtghil-alyswn~~m~~sgs-------qdktirfwdlrv~~-----~v~~l~~~~~~~glessavaav~vdpsgrll~  247 (350)
T KOG0641|consen  181 GHTGHIL-ALYSWNGAMFASGS-------QDKTIRFWDLRVNS-----CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA  247 (350)
T ss_pred             CCcccEE-EEEEecCcEEEccC-------CCceEEEEeeeccc-----eeeeccCcccCCCcccceeEEEEECCCcceee
Confidence               2222 22333555555443       57899999998765     444443321       2455678999999888


Q ss_pred             EEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee---
Q 004971          527 FRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ---  603 (721)
Q Consensus       527 ~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~---  603 (721)
                      ....   +....+||+.+++.  +.....+...+..+.|||..-+|+.++.+.       .|.+-|+.+.-..++..   
T Consensus       248 sg~~---dssc~lydirg~r~--iq~f~phsadir~vrfsp~a~yllt~syd~-------~ikltdlqgdla~el~~~vv  315 (350)
T KOG0641|consen  248 SGHA---DSSCMLYDIRGGRM--IQRFHPHSADIRCVRFSPGAHYLLTCSYDM-------KIKLTDLQGDLAHELPIMVV  315 (350)
T ss_pred             eccC---CCceEEEEeeCCce--eeeeCCCccceeEEEeCCCceEEEEecccc-------eEEEeecccchhhcCceEEE
Confidence            7765   67888999999886  666777777888999999999999998875       89999998764333221   


Q ss_pred             cCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          604 SGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       604 ~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      ..+........|.|..-.++.++.+.+
T Consensus       316 ~ehkdk~i~~rwh~~d~sfisssadkt  342 (350)
T KOG0641|consen  316 AEHKDKAIQCRWHPQDFSFISSSADKT  342 (350)
T ss_pred             EeccCceEEEEecCccceeeeccCcce
Confidence            125555566788887655555555443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.09  E-value=9.5e-09  Score=103.37  Aligned_cols=265  Identities=16%  Similarity=0.119  Sum_probs=177.6

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEE-eecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIE-LTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN  399 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~-l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~  399 (721)
                      .+.+++|||.+-..++..+.      .++.+|+..+-.... +..+   ...+....|-.||+.++.....+-       
T Consensus        28 ~vssl~fsp~~P~d~aVt~S------~rvqly~~~~~~~~k~~srF---k~~v~s~~fR~DG~LlaaGD~sG~-------   91 (487)
T KOG0310|consen   28 SVSSLCFSPKHPYDFAVTSS------VRVQLYSSVTRSVRKTFSRF---KDVVYSVDFRSDGRLLAAGDESGH-------   91 (487)
T ss_pred             cceeEecCCCCCCceEEecc------cEEEEEecchhhhhhhHHhh---ccceeEEEeecCCeEEEccCCcCc-------
Confidence            45678888833334554332      238889887765333 3333   445667788889987776433333       


Q ss_pred             ceeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEE-e-CCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeE
Q 004971          400 NQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFV-E-FPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAV  471 (721)
Q Consensus       400 ~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~-~-~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~l  471 (721)
                        +.+.+..+.  ...+...........|+|++..++.. + +..+.+||++++.. ++.    ...+...+|+|-...+
T Consensus        92 --V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hi  168 (487)
T KOG0310|consen   92 --VKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHI  168 (487)
T ss_pred             --EEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeE
Confidence              333343321  11112222234456889888776655 3 56678889988875 433    5688899999999988


Q ss_pred             EEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE
Q 004971          472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH  551 (721)
Q Consensus       472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~  551 (721)
                      +++.      .-++.+++|+....+.    ....+ .++..+....+-|.|..|+.++    .+.+.+||+-+|.. .+.
T Consensus       169 vvtG------sYDg~vrl~DtR~~~~----~v~el-nhg~pVe~vl~lpsgs~iasAg----Gn~vkVWDl~~G~q-ll~  232 (487)
T KOG0310|consen  169 VVTG------SYDGKVRLWDTRSLTS----RVVEL-NHGCPVESVLALPSGSLIASAG----GNSVKVWDLTTGGQ-LLT  232 (487)
T ss_pred             EEec------CCCceEEEEEeccCCc----eeEEe-cCCCceeeEEEcCCCCEEEEcC----CCeEEEEEecCCce-ehh
Confidence            8876      3689999999987643    33334 3445777888999999998776    57899999986542 133


Q ss_pred             ECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       552 ~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      ....+.-.++.+.+..|++.|+.++-+.       ++.+||..+-+..--..  -.+.+-+++.|||+..++..-.++
T Consensus       233 ~~~~H~KtVTcL~l~s~~~rLlS~sLD~-------~VKVfd~t~~Kvv~s~~--~~~pvLsiavs~dd~t~viGmsnG  301 (487)
T KOG0310|consen  233 SMFNHNKTVTCLRLASDSTRLLSGSLDR-------HVKVFDTTNYKVVHSWK--YPGPVLSIAVSPDDQTVVIGMSNG  301 (487)
T ss_pred             hhhcccceEEEEEeecCCceEeeccccc-------ceEEEEccceEEEEeee--cccceeeEEecCCCceEEEecccc
Confidence            3334666788999999999999999885       78888866544332222  456778899999999988766554

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=6.3e-09  Score=96.01  Aligned_cols=229  Identities=12%  Similarity=0.167  Sum_probs=163.0

Q ss_pred             CCCceeCcC-CCEEEEE--------eCCcEEEEECCCC-ceEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCc
Q 004971          421 GSFPSFSPK-GDRIAFV--------EFPGVYVVNSDGS-NRRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSE  486 (721)
Q Consensus       421 ~~~~~~SpD-G~~la~~--------~~~~l~v~d~~~g-~~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~  486 (721)
                      +..+.|||= ..+|+++        +.+.|++.++..+ ..+.+.    ....+.++||+.-..++++.      ..++.
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a------~GDGS   84 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAA------SGDGS   84 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEE------ecCce
Confidence            445667762 2345544        5789999999643 333332    56788999999988888777      36899


Q ss_pred             EEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEc
Q 004971          487 VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS  566 (721)
Q Consensus       487 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~S  566 (721)
                      ++||+......    .+..+..+...+.++.|++-.++.+..+.=  +..|.+|+..-+..  +.....+...+...+||
T Consensus        85 Lrl~d~~~~s~----Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSW--D~TiKLW~~~r~~S--v~Tf~gh~~~Iy~a~~s  156 (311)
T KOG0277|consen   85 LRLFDLTMPSK----PIHKFKEHKREVYSVDWNTVRRRIFLTSSW--DGTIKLWDPNRPNS--VQTFNGHNSCIYQAAFS  156 (311)
T ss_pred             EEEeccCCCCc----chhHHHhhhhheEEeccccccceeEEeecc--CCceEeecCCCCcc--eEeecCCccEEEEEecC
Confidence            99999766553    666777787788889999876666555421  66899998876654  66677777778899999


Q ss_pred             cC-CCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCC
Q 004971          567 PD-GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY  645 (721)
Q Consensus       567 pD-G~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~  645 (721)
                      |. +..++.++.+.       .+.+||+........+.. |...+....|+.-...+++++..++               
T Consensus       157 p~~~nlfas~Sgd~-------~l~lwdvr~~gk~~~i~a-h~~Eil~cdw~ky~~~vl~Tg~vd~---------------  213 (311)
T KOG0277|consen  157 PHIPNLFASASGDG-------TLRLWDVRSPGKFMSIEA-HNSEILCCDWSKYNHNVLATGGVDN---------------  213 (311)
T ss_pred             CCCCCeEEEccCCc-------eEEEEEecCCCceeEEEe-ccceeEeecccccCCcEEEecCCCc---------------
Confidence            96 55666666664       888899865544444332 6666777789887777777666554               


Q ss_pred             ccEEEEEcCCCC--eEEeccCCCCCCCceecCC---cCCccccc-ccc
Q 004971          646 GEIFKIKLDGSD--LKRLTQNSFEDGTPAWGPR---FIRPVDVE-EVK  687 (721)
Q Consensus       646 ~~l~~~d~~~~~--~~~lt~~~~~~~~~~~sp~---~l~~~~~~-~~~  687 (721)
                       .|+.||+..=+  +-.|..|+..+....|||.   .||..+.| .++
T Consensus       214 -~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r  260 (311)
T KOG0277|consen  214 -LVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVR  260 (311)
T ss_pred             -eEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence             39999987643  4577778888999999994   77887777 444

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.08  E-value=5.7e-09  Score=111.91  Aligned_cols=208  Identities=14%  Similarity=0.058  Sum_probs=133.4

Q ss_pred             EEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCE-EEEEe-
Q 004971          360 IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR-IAFVE-  437 (721)
Q Consensus       360 ~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~-la~~~-  437 (721)
                      +.+..+.+|.+.+.++.||.++ .|+..+.+..       .+||-..-+..... -...--+..++|+|-..+ ++..+ 
T Consensus       360 kP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKT-------VRLWh~~~~~CL~~-F~HndfVTcVaFnPvDDryFiSGSL  430 (712)
T KOG0283|consen  360 KPFCEFKGHTADILDLSWSKNN-FLLSSSMDKT-------VRLWHPGRKECLKV-FSHNDFVTCVAFNPVDDRYFISGSL  430 (712)
T ss_pred             cchhhhhccchhheecccccCC-eeEecccccc-------EEeecCCCcceeeE-EecCCeeEEEEecccCCCcEeeccc
Confidence            3566677888899999999765 6777777776       44554332222111 111112345788885544 44443 


Q ss_pred             CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC----CC
Q 004971          438 FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN----GK  511 (721)
Q Consensus       438 ~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~----~~  511 (721)
                      ++.+.+|++...+...-.  ...++.+.|+|||+..++.+       -++..++|......- .......+...    ..
T Consensus       431 D~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt-------~~G~C~fY~t~~lk~-~~~~~I~~~~~Kk~~~~  502 (712)
T KOG0283|consen  431 DGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGT-------FNGYCRFYDTEGLKL-VSDFHIRLHNKKKKQGK  502 (712)
T ss_pred             ccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEE-------eccEEEEEEccCCeE-EEeeeEeeccCccccCc
Confidence            899999999887655544  57899999999999999987       357777776543210 00000111111    12


Q ss_pred             CCcceEEccC-CCEEEEEEeeCCceeEEEEECCCCcccceEECcC--CCcCceeeEEccCCCEEEEEEccCCCCCCceeE
Q 004971          512 NNAFPSVSPD-GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE--GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM  588 (721)
Q Consensus       512 ~~~~~~~SpD-g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i  588 (721)
                      .+..+.|.|- -..|+++++   +.+|.++|..+...  +..+-.  .........|+.||++|++++.+.       .|
T Consensus       503 rITG~Q~~p~~~~~vLVTSn---DSrIRI~d~~~~~l--v~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs-------~V  570 (712)
T KOG0283|consen  503 RITGLQFFPGDPDEVLVTSN---DSRIRIYDGRDKDL--VHKFKGFRNTSSQISASFSSDGKHIVSASEDS-------WV  570 (712)
T ss_pred             eeeeeEecCCCCCeEEEecC---CCceEEEeccchhh--hhhhcccccCCcceeeeEccCCCEEEEeecCc-------eE
Confidence            5677777763 335777877   88999999976553  222221  122235678999999999999775       89


Q ss_pred             EEEecCCC
Q 004971          589 YLIHPNGT  596 (721)
Q Consensus       589 ~~~d~~~~  596 (721)
                      |+|+.+.-
T Consensus       571 YiW~~~~~  578 (712)
T KOG0283|consen  571 YIWKNDSF  578 (712)
T ss_pred             EEEeCCCC
Confidence            99998543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.06  E-value=3.9e-09  Score=97.03  Aligned_cols=217  Identities=16%  Similarity=0.058  Sum_probs=146.7

Q ss_pred             CeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC---CCcceecccCC
Q 004971          345 SYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP---LPDISLFRFDG  421 (721)
Q Consensus       345 ~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~  421 (721)
                      .+-.-.+||.-+|.  .|..+ .|.--+..++|+.|.++|+......-         +.+.++..+   ...+...+...
T Consensus        79 adftakvw~a~tgd--elhsf-~hkhivk~~af~~ds~~lltgg~ekl---------lrvfdln~p~App~E~~ghtg~I  146 (334)
T KOG0278|consen   79 ADFTAKVWDAVTGD--ELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKL---------LRVFDLNRPKAPPKEISGHTGGI  146 (334)
T ss_pred             ccchhhhhhhhhhh--hhhhh-hhhheeeeEEecccchhhhccchHHH---------hhhhhccCCCCCchhhcCCCCcc
Confidence            34446799998887  44432 23445678999999999987655443         223333333   33333334444


Q ss_pred             CCceeCcCCCEEEE-EeCCcEEEEECCCCceE-EEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971          422 SFPSFSPKGDRIAF-VEFPGVYVVNSDGSNRR-QVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD  498 (721)
Q Consensus       422 ~~~~~SpDG~~la~-~~~~~l~v~d~~~g~~~-~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~  498 (721)
                      +.+-|-...+.|.. ..+..+.+||..++... .|. +..+.++.+++||++|..+-        ...+..|+.+.-+  
T Consensus       147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~--------gssV~Fwdaksf~--  216 (334)
T KOG0278|consen  147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY--------GSSVKFWDAKSFG--  216 (334)
T ss_pred             eeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec--------CceeEEecccccc--
Confidence            55566555555555 46889999999988754 455 77899999999999988763        4678888776432  


Q ss_pred             CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC-cCCCcCceeeEEccCCCEEEEEEc
Q 004971          499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL-TEGPWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l-~~~~~~~~~~~~SpDG~~l~~~~~  577 (721)
                         .++. ...+..+.+.+.+|+...++...+   +..+|.+|..+|+.  +... ..+.+.+..+.|||||..-+.++.
T Consensus       217 ---~lKs-~k~P~nV~SASL~P~k~~fVaGge---d~~~~kfDy~TgeE--i~~~nkgh~gpVhcVrFSPdGE~yAsGSE  287 (334)
T KOG0278|consen  217 ---LLKS-YKMPCNVESASLHPKKEFFVAGGE---DFKVYKFDYNTGEE--IGSYNKGHFGPVHCVRFSPDGELYASGSE  287 (334)
T ss_pred             ---ceee-ccCccccccccccCCCceEEecCc---ceEEEEEeccCCce--eeecccCCCCceEEEEECCCCceeeccCC
Confidence               1221 123346777899999877776666   78999999999985  3332 455667889999999987666666


Q ss_pred             cCCCCCCceeEEEEecCCCceE
Q 004971          578 RDNPGSGSFEMYLIHPNGTGLR  599 (721)
Q Consensus       578 ~~~~~~~~~~i~~~d~~~~~~~  599 (721)
                      ++       .|.+|.+.-++..
T Consensus       288 DG-------TirlWQt~~~~~~  302 (334)
T KOG0278|consen  288 DG-------TIRLWQTTPGKTY  302 (334)
T ss_pred             Cc-------eEEEEEecCCCch
Confidence            64       7888877665543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.05  E-value=4.7e-08  Score=94.80  Aligned_cols=253  Identities=13%  Similarity=0.124  Sum_probs=150.2

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      ....++|.+   ..++|+.   ...+..|++||-.+.....+...  ....+..++|-|.+...+....+.+       .
T Consensus       100 dlr~~aWhq---H~~~fav---a~nddvVriy~ksst~pt~Lks~--sQrnvtclawRPlsaselavgCr~g-------I  164 (445)
T KOG2139|consen  100 DLRGVAWHQ---HIIAFAV---ATNDDVVRIYDKSSTCPTKLKSV--SQRNVTCLAWRPLSASELAVGCRAG-------I  164 (445)
T ss_pred             ceeeEeech---hhhhhhh---hccCcEEEEeccCCCCCceecch--hhcceeEEEeccCCcceeeeeecce-------e
Confidence            345566655   3333332   12344588888776554444422  2456778999998766555555555       2


Q ss_pred             eeEEEeccCCCC-----------cceecc--cCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe---ecCceee
Q 004971          401 QLLLENIKSPLP-----------DISLFR--FDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY---FKNAFST  462 (721)
Q Consensus       401 ~l~~~~~~~~~~-----------~~~~~~--~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~---~~~~~~~  462 (721)
                      -+|..+......           ++...+  ..+.+++|.+||..++..  ++..|.+||.+++....|.   .+.+..+
T Consensus       165 ciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slL  244 (445)
T KOG2139|consen  165 CIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLL  244 (445)
T ss_pred             EEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeE
Confidence            233322211111           111111  113457999999998887  4788999999999877776   5677789


Q ss_pred             EEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEEC
Q 004971          463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA  542 (721)
Q Consensus       463 ~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~  542 (721)
                      .|||||.+|+.++       -+....+|.....-     ...+.....+.+....|+|+|++|+|+...  ...||....
T Consensus       245 kwSPdgd~lfaAt-------~davfrlw~e~q~w-----t~erw~lgsgrvqtacWspcGsfLLf~~sg--sp~lysl~f  310 (445)
T KOG2139|consen  245 KWSPDGDVLFAAT-------CDAVFRLWQENQSW-----TKERWILGSGRVQTACWSPCGSFLLFACSG--SPRLYSLTF  310 (445)
T ss_pred             EEcCCCCEEEEec-------ccceeeeehhcccc-----eecceeccCCceeeeeecCCCCEEEEEEcC--CceEEEEee
Confidence            9999999998876       45677788544322     222333344588889999999999998753  445665543


Q ss_pred             CCCcc--------cc---eEECc-----CC----CcCceeeEEccCCCEEEEEEccCCC-CCCceeEEEEecCCCceEEe
Q 004971          543 EGGEG--------YG---LHRLT-----EG----PWSDTMCNWSPDGEWIAFASDRDNP-GSGSFEMYLIHPNGTGLRKL  601 (721)
Q Consensus       543 ~~g~~--------~~---~~~l~-----~~----~~~~~~~~~SpDG~~l~~~~~~~~~-~~~~~~i~~~d~~~~~~~~l  601 (721)
                      .+...        +.   +..|.     .+    -+....++|.|.|.+|++.....+- ......|-+||....-...+
T Consensus       311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel  390 (445)
T KOG2139|consen  311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL  390 (445)
T ss_pred             cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence            32110        00   00110     11    2335679999999999998765421 11233456666544444433


Q ss_pred             e
Q 004971          602 I  602 (721)
Q Consensus       602 ~  602 (721)
                      .
T Consensus       391 s  391 (445)
T KOG2139|consen  391 S  391 (445)
T ss_pred             E
Confidence            3

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.04  E-value=1.8e-08  Score=99.85  Aligned_cols=210  Identities=14%  Similarity=0.100  Sum_probs=147.1

Q ss_pred             ceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971          424 PSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG  499 (721)
Q Consensus       424 ~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~  499 (721)
                      ..++|+...++.. .+..|++|.........+.   ...+......|.|.+|+.++       +++.+-+.++....   
T Consensus       267 v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs-------~d~~w~Fsd~~~g~---  336 (506)
T KOG0289|consen  267 VKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSAS-------NDGTWAFSDISSGS---  336 (506)
T ss_pred             EEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEec-------CCceEEEEEccCCc---
Confidence            4677777666555 3677888887554433332   66788899999999999987       45556666665543   


Q ss_pred             ccceEEcccC--CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971          500 VSAVRRLTTN--GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       500 ~~~~~~l~~~--~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~  577 (721)
                        ........  +-.....+|+|||-.+.....   +..|.+||+.++..  +..+..+.+.+..++||.+|=||+.+.+
T Consensus       337 --~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~---d~~vkiwdlks~~~--~a~Fpght~~vk~i~FsENGY~Lat~ad  409 (506)
T KOG0289|consen  337 --QLTVVSDETSDVEYTSAAFHPDGLIFGTGTP---DGVVKIWDLKSQTN--VAKFPGHTGPVKAISFSENGYWLATAAD  409 (506)
T ss_pred             --EEEEEeeccccceeEEeeEcCCceEEeccCC---CceEEEEEcCCccc--cccCCCCCCceeEEEeccCceEEEEEec
Confidence              44444442  234667899999987776665   78899999988764  7777788888999999999999999998


Q ss_pred             cCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971          578 RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       578 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  657 (721)
                      +.       .|.+||+..-+..+-........+..+.|.+.|++|+..+.+-                 .||+++-.++.
T Consensus       410 d~-------~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l-----------------~Vy~~~k~~k~  465 (506)
T KOG0289|consen  410 DG-------SVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDL-----------------QVYICKKKTKS  465 (506)
T ss_pred             CC-------eEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeeccee-----------------EEEEEeccccc
Confidence            85       6999999776543333322334578899999999998874432                 47877777766


Q ss_pred             eEEec---cCCCCCCCceec
Q 004971          658 LKRLT---QNSFEDGTPAWG  674 (721)
Q Consensus       658 ~~~lt---~~~~~~~~~~~s  674 (721)
                      .+.+.   .+.+-.....|.
T Consensus       466 W~~~~~~~~~sg~st~v~Fg  485 (506)
T KOG0289|consen  466 WTEIKELADHSGLSTGVRFG  485 (506)
T ss_pred             ceeeehhhhcccccceeeec
Confidence            55443   344333344443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.03  E-value=1e-08  Score=97.11  Aligned_cols=267  Identities=12%  Similarity=0.096  Sum_probs=175.5

Q ss_pred             CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEecc-----CCC---------------CcceecccCCCCceeC
Q 004971          368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK-----SPL---------------PDISLFRFDGSFPSFS  427 (721)
Q Consensus       368 ~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~-----~~~---------------~~~~~~~~~~~~~~~S  427 (721)
                      |....+..+|||||..++..+.+...+         +.+..     ...               ..+.........+.|+
T Consensus       111 HK~~cR~aafs~DG~lvATGsaD~SIK---------ildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH  181 (430)
T KOG0640|consen  111 HKSPCRAAAFSPDGSLVATGSADASIK---------ILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH  181 (430)
T ss_pred             cccceeeeeeCCCCcEEEccCCcceEE---------EeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence            355567789999999988876655522         22211     000               0111112234567999


Q ss_pred             cCCCEEEEE-eCCcEEEEECCCCceEE----Ee-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCcc
Q 004971          428 PKGDRIAFV-EFPGVYVVNSDGSNRRQ----VY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVS  501 (721)
Q Consensus       428 pDG~~la~~-~~~~l~v~d~~~g~~~~----l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  501 (721)
                      |..+.|+.. .+..|.++|......++    +. ...+..+.|.|.|.+|++..       +....++|+++.-.-    
T Consensus       182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT-------dHp~~rlYdv~T~Qc----  250 (430)
T KOG0640|consen  182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT-------DHPTLRLYDVNTYQC----  250 (430)
T ss_pred             chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec-------CCCceeEEeccceeE----
Confidence            998877777 47889999986543322    22 45788999999999999987       457889998875321    


Q ss_pred             ceEEcc--cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC--CCcCceeeEEccCCCEEEEEEc
Q 004971          502 AVRRLT--TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE--GPWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       502 ~~~~l~--~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~--~~~~~~~~~~SpDG~~l~~~~~  577 (721)
                      -+....  .+.+.+..+.+|+.|+..+..+.   +..|.+||--+++.  ++.+..  +...+.+..|+.+|++|+....
T Consensus       251 fvsanPd~qht~ai~~V~Ys~t~~lYvTaSk---DG~IklwDGVS~rC--v~t~~~AH~gsevcSa~Ftkn~kyiLsSG~  325 (430)
T KOG0640|consen  251 FVSANPDDQHTGAITQVRYSSTGSLYVTASK---DGAIKLWDGVSNRC--VRTIGNAHGGSEVCSAVFTKNGKYILSSGK  325 (430)
T ss_pred             eeecCcccccccceeEEEecCCccEEEEecc---CCcEEeeccccHHH--HHHHHhhcCCceeeeEEEccCCeEEeecCC
Confidence            111111  12256777899999997777776   77899999877765  555542  3445788999999999988877


Q ss_pred             cCCCCCCceeEEEEecCCCceEEeeec-CCCCC---cCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEc
Q 004971          578 RDNPGSGSFEMYLIHPNGTGLRKLIQS-GSAGR---ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL  653 (721)
Q Consensus       578 ~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~---~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~  653 (721)
                      +.       .+++|.+.+++..+.... +..+.   -....|.....++++-....+                .+-.||.
T Consensus       326 DS-------~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~----------------slcsWda  382 (430)
T KOG0640|consen  326 DS-------TVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASN----------------SLCSWDA  382 (430)
T ss_pred             cc-------eeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccC----------------ceeeccc
Confidence            64       899999999976654432 11122   234667777778777666554                4888998


Q ss_pred             CCCCeEEec--cCCCCCCCceecCCcCCccc
Q 004971          654 DGSDLKRLT--QNSFEDGTPAWGPRFIRPVD  682 (721)
Q Consensus       654 ~~~~~~~lt--~~~~~~~~~~~sp~~l~~~~  682 (721)
                      .++..+.|-  +|.+.......||..-+++.
T Consensus       383 Rtadr~~l~slgHn~a~R~i~HSP~~p~FmT  413 (430)
T KOG0640|consen  383 RTADRVALLSLGHNGAVRWIVHSPVEPAFMT  413 (430)
T ss_pred             cchhhhhhcccCCCCCceEEEeCCCCCceee
Confidence            776544333  24445555666887655554

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.03  E-value=3.6e-09  Score=102.32  Aligned_cols=249  Identities=11%  Similarity=0.085  Sum_probs=157.0

Q ss_pred             CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCC
Q 004971          343 TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGS  422 (721)
Q Consensus       343 g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  422 (721)
                      |+.++.+.+||++..+.  +..+..+.+-+.++.++.  ..++++..+..       ...|-.+.  +...  .+-+...
T Consensus        85 Gs~DG~VkiWnlsqR~~--~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKt-------vK~wk~~~--~p~~--tilg~s~  149 (433)
T KOG0268|consen   85 GSCDGEVKIWNLSQREC--IRTFKAHEGLVRGICVTQ--TSFFTVGDDKT-------VKQWKIDG--PPLH--TILGKSV  149 (433)
T ss_pred             cccCceEEEEehhhhhh--hheeecccCceeeEEecc--cceEEecCCcc-------eeeeeccC--Ccce--eeecccc
Confidence            55677899999988663  334455677777888875  56666666665       33343322  2111  1111111


Q ss_pred             CceeCcCC-CEEEEEeCCcEEEEECCCCceE-EEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971          423 FPSFSPKG-DRIAFVEFPGVYVVNSDGSNRR-QVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD  498 (721)
Q Consensus       423 ~~~~SpDG-~~la~~~~~~l~v~d~~~g~~~-~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~  498 (721)
                      ...++.-. ..+..+....|.+||..-..+. .+.  ...+..+.|+|--..|+.++      ..+..+.||++..+.  
T Consensus       150 ~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~------~sDrsIvLyD~R~~~--  221 (433)
T KOG0268|consen  150 YLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC------ASDRSIVLYDLRQAS--  221 (433)
T ss_pred             ccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeee------ccCCceEEEecccCC--
Confidence            11111111 1111223456889998655543 333  34567899999888887766      357888888887765  


Q ss_pred             CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC-cCCCcCceeeEEccCCCEEEEEEc
Q 004971          499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL-TEGPWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l-~~~~~~~~~~~~SpDG~~l~~~~~  577 (721)
                         .++.+.... ....++|+|.+--++.+++   +..||.+|...-+.  +..+ ..+...+.++.|||-|+.++.++.
T Consensus       222 ---Pl~KVi~~m-RTN~IswnPeafnF~~a~E---D~nlY~~DmR~l~~--p~~v~~dhvsAV~dVdfsptG~Efvsgsy  292 (433)
T KOG0268|consen  222 ---PLKKVILTM-RTNTICWNPEAFNFVAANE---DHNLYTYDMRNLSR--PLNVHKDHVSAVMDVDFSPTGQEFVSGSY  292 (433)
T ss_pred             ---ccceeeeec-cccceecCccccceeeccc---cccceehhhhhhcc--cchhhcccceeEEEeccCCCcchhccccc
Confidence               444444333 4567899995544444444   77899999875432  2222 244556788999999999999998


Q ss_pred             cCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          578 RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       578 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      +.       .|.++.+..+..+.+.-..--..+..+.||-|.++|+..+++.+
T Consensus       293 Dk-------sIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~n  338 (433)
T KOG0268|consen  293 DK-------SIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGN  338 (433)
T ss_pred             cc-------eEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcc
Confidence            85       89999998887776642212235678999999999987777664

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.03  E-value=9.7e-08  Score=95.02  Aligned_cols=227  Identities=19%  Similarity=0.214  Sum_probs=140.6

Q ss_pred             CcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeC-cCCCEEEEEeCCcEEEEECCCCceE
Q 004971          374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFS-PKGDRIAFVEFPGVYVVNSDGSNRR  452 (721)
Q Consensus       374 ~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~S-pDG~~la~~~~~~l~v~d~~~g~~~  452 (721)
                      ++.|.+....|+++....        .+|+..+..+....+..... ...+++. ++ ..++++....+.++|+.+++.+
T Consensus         4 gp~~d~~~g~l~~~D~~~--------~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~-g~l~v~~~~~~~~~d~~~g~~~   73 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPG--------GRIYRVDPDTGEVEVIDLPG-PNGMAFDRPD-GRLYVADSGGIAVVDPDTGKVT   73 (246)
T ss_dssp             EEEEETTTTEEEEEETTT--------TEEEEEETTTTEEEEEESSS-EEEEEEECTT-SEEEEEETTCEEEEETTTTEEE
T ss_pred             ceEEECCCCEEEEEEcCC--------CEEEEEECCCCeEEEEecCC-CceEEEEccC-CEEEEEEcCceEEEecCCCcEE
Confidence            478888777888764433        35777776665333222222 3335666 55 4677777788888899999876


Q ss_pred             EEee--------cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCE
Q 004971          453 QVYF--------KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKW  524 (721)
Q Consensus       453 ~l~~--------~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~  524 (721)
                      .+..        .....+++.|+|+ |+++............-.||+++.++     +...+...-.....++|+|||+.
T Consensus        74 ~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~-----~~~~~~~~~~~pNGi~~s~dg~~  147 (246)
T PF08450_consen   74 VLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDG-----KVTVVADGLGFPNGIAFSPDGKT  147 (246)
T ss_dssp             EEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS-----EEEEEEEEESSEEEEEEETTSSE
T ss_pred             EEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCC-----eEEEEecCcccccceEECCcchh
Confidence            6651        1234789999998 66665432211111127899998873     44555444456678999999999


Q ss_pred             EEEEEeeCCceeEEEEECC--CCccc---ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971          525 IVFRSTRTGYKNLYIMDAE--GGEGY---GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR  599 (721)
Q Consensus       525 l~~~s~~~g~~~l~~~d~~--~g~~~---~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~  599 (721)
                      |++....  ...|+.++++  +++..   ....+.........+++..+|+ |+++....      ..|++++.+ |+..
T Consensus       148 lyv~ds~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~------~~I~~~~p~-G~~~  217 (246)
T PF08450_consen  148 LYVADSF--NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGG------GRIVVFDPD-GKLL  217 (246)
T ss_dssp             EEEEETT--TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETT------TEEEEEETT-SCEE
T ss_pred             eeecccc--cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCC------CEEEEECCC-ccEE
Confidence            9887653  5579998885  33221   1222333332356789999997 44454332      289999998 4544


Q ss_pred             EeeecCCCCCcCCeEE-CCCCCEEEEEEe
Q 004971          600 KLIQSGSAGRANHPYF-SPDGKSIVFTSD  627 (721)
Q Consensus       600 ~l~~~~~~~~~~~~~~-SpDG~~l~~~~~  627 (721)
                      ..... ......+++| -+|.+.|++++.
T Consensus       218 ~~i~~-p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  218 REIEL-PVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             EEEE--SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             EEEcC-CCCCEEEEEEECCCCCEEEEEeC
Confidence            43333 2346788899 588898888764

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.01  E-value=2.2e-08  Score=95.57  Aligned_cols=261  Identities=13%  Similarity=0.054  Sum_probs=153.8

Q ss_pred             cCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC----------ccee-cccC--CCCcee-------CcCCCE
Q 004971          373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP----------DISL-FRFD--GSFPSF-------SPKGDR  432 (721)
Q Consensus       373 ~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~-~~~~--~~~~~~-------SpDG~~  432 (721)
                      .+..|||||.-|+..+.++..       ++|-........          .... ....  .....|       -|+...
T Consensus        53 kgckWSPDGSciL~~sedn~l-------~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l  125 (406)
T KOG2919|consen   53 KGCKWSPDGSCILSLSEDNCL-------NCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNL  125 (406)
T ss_pred             ccceeCCCCceEEeecccCee-------eEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccce
Confidence            467899999999988887773       333322211000          0000 0000  001122       255555


Q ss_pred             EEEE-eCCcEEEEECCCCceEEEe--------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccce
Q 004971          433 IAFV-EFPGVYVVNSDGSNRRQVY--------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAV  503 (721)
Q Consensus       433 la~~-~~~~l~v~d~~~g~~~~l~--------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  503 (721)
                      ++.. .+.-|.+||.-+|+.+--.        -....++.|||||..|+..        .+..+++++....+..- ...
T Consensus       126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG--------ykrcirvFdt~RpGr~c-~vy  196 (406)
T KOG2919|consen  126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG--------YKRCIRVFDTSRPGRDC-PVY  196 (406)
T ss_pred             eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec--------ccceEEEeeccCCCCCC-cch
Confidence            5554 3677999999999876544        1245689999999999875        35678888875544310 011


Q ss_pred             EEcccC----CCCCcceEEccCCC-EEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971          504 RRLTTN----GKNNAFPSVSPDGK-WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       504 ~~l~~~----~~~~~~~~~SpDg~-~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~  578 (721)
                      ..++.+    .+.....+|||-.. .+++.+-   ..++=++.-.++++  +..+..+.+.++++.|.+||.+|+.++..
T Consensus       197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY---~q~~giy~~~~~~p--l~llggh~gGvThL~~~edGn~lfsGaRk  271 (406)
T KOG2919|consen  197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSY---GQRVGIYNDDGRRP--LQLLGGHGGGVTHLQWCEDGNKLFSGARK  271 (406)
T ss_pred             hhhhcccccccceeeeeeccCCCCcceeeecc---cceeeeEecCCCCc--eeeecccCCCeeeEEeccCcCeecccccC
Confidence            122221    13456679999554 6666654   33343444444554  55566777889999999999999887765


Q ss_pred             CCCCCCceeEEEEecCCCceEEeeecCCCC-CcCC--eEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971          579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAG-RANH--PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       579 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~-~~~~--~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                      .      ..|..||+...+.-......+.+ .-..  +...|+|++|+..+.++                 .|.+||+++
T Consensus       272 ~------dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG-----------------~V~vwdlk~  328 (406)
T KOG2919|consen  272 D------DKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG-----------------SVRVWDLKD  328 (406)
T ss_pred             C------CeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc-----------------cEEEEecCC
Confidence            4      38999999654211111011111 1112  34578899888665554                 389999988


Q ss_pred             -CCeEEecc-CCCCCCCceecCCc
Q 004971          656 -SDLKRLTQ-NSFEDGTPAWGPRF  677 (721)
Q Consensus       656 -~~~~~lt~-~~~~~~~~~~sp~~  677 (721)
                       ++...++. +.-.....++.|.|
T Consensus       329 ~gn~~sv~~~~sd~vNgvslnP~m  352 (406)
T KOG2919|consen  329 LGNEVSVTGNYSDTVNGVSLNPIM  352 (406)
T ss_pred             CCCcccccccccccccceecCccc
Confidence             66444443 34445667777863

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.00  E-value=9.6e-08  Score=87.32  Aligned_cols=259  Identities=12%  Similarity=0.067  Sum_probs=160.8

Q ss_pred             eeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEE
Q 004971          273 CWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELF  352 (721)
Q Consensus       273 ~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~  352 (721)
                      .|..||....+  ...+..+.+|.. ..+ .       -++...+++..+..++.+. |...++.     ++.+..+++|
T Consensus        24 ryN~dGnY~lt--cGsdrtvrLWNp-~rg-~-------liktYsghG~EVlD~~~s~-Dnskf~s-----~GgDk~v~vw   86 (307)
T KOG0316|consen   24 RYNVDGNYCLT--CGSDRTVRLWNP-LRG-A-------LIKTYSGHGHEVLDAALSS-DNSKFAS-----CGGDKAVQVW   86 (307)
T ss_pred             EEccCCCEEEE--cCCCceEEeecc-ccc-c-------eeeeecCCCceeeeccccc-ccccccc-----CCCCceEEEE
Confidence            56678886663  333678888832 222 1       4455566777778888888 8887765     4467789999


Q ss_pred             ECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC-CCcceecc---cCCCCceeCc
Q 004971          353 DLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP-LPDISLFR---FDGSFPSFSP  428 (721)
Q Consensus       353 dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~---~~~~~~~~Sp  428 (721)
                      |+.+|+  .+.++.+|.+.+..+.|..+...++..+.+..         +..++-++. .+++..+.   -....+.++ 
T Consensus        87 DV~TGk--v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s---------~r~wDCRS~s~ePiQildea~D~V~Si~v~-  154 (307)
T KOG0316|consen   87 DVNTGK--VDRRFRGHLAQVNTVRFNEESSVVASGSFDSS---------VRLWDCRSRSFEPIQILDEAKDGVSSIDVA-  154 (307)
T ss_pred             EcccCe--eeeecccccceeeEEEecCcceEEEeccccce---------eEEEEcccCCCCccchhhhhcCceeEEEec-
Confidence            999998  66777888888999999988887776655554         333343322 12222221   111122222 


Q ss_pred             CCCEEEEE-eCCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc
Q 004971          429 KGDRIAFV-EFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL  506 (721)
Q Consensus       429 DG~~la~~-~~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l  506 (721)
                       +..|+.. .++.+..||+.-|....-. ...+..+.||+||+.++..+       -+..+++.+-+...     .+...
T Consensus       155 -~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~-------l~stlrLlDk~tGk-----lL~sY  221 (307)
T KOG0316|consen  155 -EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASS-------LDSTLRLLDKETGK-----LLKSY  221 (307)
T ss_pred             -ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEee-------ccceeeecccchhH-----HHHHh
Confidence             3333333 4788999999877643322 56788999999999988876       35666665544322     22222


Q ss_pred             ccCCCC--CcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcC-ceeeEEccCCCEEEEEEcc
Q 004971          507 TTNGKN--NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS-DTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       507 ~~~~~~--~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~-~~~~~~SpDG~~l~~~~~~  578 (721)
                      ..+...  -....++..-..++..++   +..+|.||+..+..  +..+...... +..+++.|.-..++.+...
T Consensus       222 kGhkn~eykldc~l~qsdthV~sgSE---DG~Vy~wdLvd~~~--~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~  291 (307)
T KOG0316|consen  222 KGHKNMEYKLDCCLNQSDTHVFSGSE---DGKVYFWDLVDETQ--ISKLSVVSTVIVTDLSCHPTMDDFITATGH  291 (307)
T ss_pred             cccccceeeeeeeecccceeEEeccC---CceEEEEEecccee--eeeeccCCceeEEeeecccCccceeEecCC
Confidence            233211  223455554455555555   78899999987664  4445443332 5778888887666666554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.00  E-value=3.8e-08  Score=93.79  Aligned_cols=232  Identities=16%  Similarity=0.132  Sum_probs=153.4

Q ss_pred             CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCC--EEEEEEeeCCCCCC
Q 004971          319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSS--RVGYHKCRGGSTRE  396 (721)
Q Consensus       319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~--~l~~~~~~~~~~~~  396 (721)
                      ...+..+++   +|.+++.     |+.+..|++||+....  ++.....|.+.+..+.|+++-.  .|+...+++.    
T Consensus        43 ~~sitavAV---s~~~~aS-----GssDetI~IYDm~k~~--qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~----  108 (362)
T KOG0294|consen   43 AGSITALAV---SGPYVAS-----GSSDETIHIYDMRKRK--QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH----  108 (362)
T ss_pred             ccceeEEEe---cceeEec-----cCCCCcEEEEeccchh--hhcceeccccceEEEEecCCcchhheeeecCCCc----
Confidence            334455566   7788776     5566779999998776  5555566778888888888775  6776665555    


Q ss_pred             CCcceeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeE
Q 004971          397 DGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAV  471 (721)
Q Consensus       397 ~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~l  471 (721)
                           +.+++...-  ...+......+..++.+|.|+....+ ++..+.+||+-.|+...+.  ......+.|+|.|.++
T Consensus       109 -----i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F  183 (362)
T KOG0294|consen  109 -----IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHF  183 (362)
T ss_pred             -----EEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEE
Confidence                 333333222  11222233446678999999754444 5888999999877654443  4556679999999998


Q ss_pred             EEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE
Q 004971          472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH  551 (721)
Q Consensus       472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~  551 (721)
                      ++..        ...+.||.++...     ....+... .......|- ++..|++..+   +..|..+|-+++.+  +.
T Consensus       184 ~v~~--------~~~i~i~q~d~A~-----v~~~i~~~-~r~l~~~~l-~~~~L~vG~d---~~~i~~~D~ds~~~--~~  243 (362)
T KOG0294|consen  184 VVSG--------RNKIDIYQLDNAS-----VFREIENP-KRILCATFL-DGSELLVGGD---NEWISLKDTDSDTP--LT  243 (362)
T ss_pred             EEEe--------ccEEEEEecccHh-----Hhhhhhcc-ccceeeeec-CCceEEEecC---CceEEEeccCCCcc--ce
Confidence            8875        4678888887643     22222222 123333343 5666777665   67899999987664  66


Q ss_pred             ECcCCCcCceeeE--EccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971          552 RLTEGPWSDTMCN--WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       552 ~l~~~~~~~~~~~--~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                      .+..+...+-.+.  -.|++.+|+.++.++       .|.+||++..
T Consensus       244 ~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG-------~I~vWd~~~~  283 (362)
T KOG0294|consen  244 EFLAHENRVKDIASYTNPEHEYLVTASSDG-------FIKVWDIDME  283 (362)
T ss_pred             eeecchhheeeeEEEecCCceEEEEeccCc-------eEEEEEcccc
Confidence            6666766655554  367888898888885       7888888654

>PRK10115 protease 2; Provisional

Probab=98.97  E-value=9.1e-07  Score=100.27  Aligned_cols=256  Identities=13%  Similarity=0.103  Sum_probs=157.9

Q ss_pred             ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce--EEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971          322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF--IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN  399 (721)
Q Consensus       322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~--~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~  399 (721)
                      .....+|| ||++|+|.....|.+...|++.|+.+|+.  ..+.     ... ..++|++|++.|+|...+...   ...
T Consensus       129 l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-----~~~-~~~~w~~D~~~~~y~~~~~~~---~~~  198 (686)
T PRK10115        129 LGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-----NVE-PSFVWANDSWTFYYVRKHPVT---LLP  198 (686)
T ss_pred             EeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-----Ccc-eEEEEeeCCCEEEEEEecCCC---CCC
Confidence            44677899 99999999988899999999999998862  2221     112 358999999999998875321   011


Q ss_pred             ceeEEEeccCCCCcc-eeccc-CCC---CceeCcCCCEEEEE----eCCcEEEEEC--CCCceEEEe-ecCceeeEEcCC
Q 004971          400 NQLLLENIKSPLPDI-SLFRF-DGS---FPSFSPKGDRIAFV----EFPGVYVVNS--DGSNRRQVY-FKNAFSTVWDPV  467 (721)
Q Consensus       400 ~~l~~~~~~~~~~~~-~~~~~-~~~---~~~~SpDG~~la~~----~~~~l~v~d~--~~g~~~~l~-~~~~~~~~~spd  467 (721)
                      .++|..++.++.... ..+.. ...   ....+.|++++++.    ..+.+++++.  ..++.+.+. ......+.....
T Consensus       199 ~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (686)
T PRK10115        199 YQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHY  278 (686)
T ss_pred             CEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeC
Confidence            578999988773221 12221 111   11235588887754    2467888884  334433333 111122233344


Q ss_pred             CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC-C-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCC
Q 004971          468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN-G-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG  545 (721)
Q Consensus       468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g  545 (721)
                      +..+++.++.     +..+..|+.++....   ...+.+... . .....+.++  +++|++.....+...|++++..++
T Consensus       279 ~~~ly~~tn~-----~~~~~~l~~~~~~~~---~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~  348 (686)
T PRK10115        279 QHRFYLRSNR-----HGKNFGLYRTRVRDE---QQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTR  348 (686)
T ss_pred             CCEEEEEEcC-----CCCCceEEEecCCCc---ccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCC
Confidence            5677777642     345667777776531   133444444 2 234445555  678999888888889999998765


Q ss_pred             cccceEECc-CCCcCceeeEEc--cCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971          546 EGYGLHRLT-EGPWSDTMCNWS--PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ  603 (721)
Q Consensus       546 ~~~~~~~l~-~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  603 (721)
                      .   +..+. ........+.++  +++..+++.....   .....+|.+|+.+++.+.+..
T Consensus       349 ~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~---~~P~~~y~~d~~~~~~~~l~~  403 (686)
T PRK10115        349 E---VIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSM---TTPDTLFELDMDTGERRVLKQ  403 (686)
T ss_pred             c---eEEecCCCCceEeeecccCCCCCceEEEEEecC---CCCCEEEEEECCCCcEEEEEe
Confidence            5   55554 222222233344  5666666655543   355699999999887666654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=5e-08  Score=100.46  Aligned_cols=260  Identities=13%  Similarity=0.110  Sum_probs=158.3

Q ss_pred             CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCC
Q 004971          318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRED  397 (721)
Q Consensus       318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~  397 (721)
                      +...+..+.+.| .|.+|+.     |++++.+++|.+.||.......+   ...+.+++|+|.++.-+.+...+.     
T Consensus       399 Htg~Vr~iSvdp-~G~wlas-----GsdDGtvriWEi~TgRcvr~~~~---d~~I~~vaw~P~~~~~vLAvA~~~-----  464 (733)
T KOG0650|consen  399 HTGLVRSISVDP-SGEWLAS-----GSDDGTVRIWEIATGRCVRTVQF---DSEIRSVAWNPLSDLCVLAVAVGE-----  464 (733)
T ss_pred             cCCeEEEEEecC-Ccceeee-----cCCCCcEEEEEeecceEEEEEee---cceeEEEEecCCCCceeEEEEecC-----
Confidence            344566788899 9999887     66778899999999986544433   567889999999876444433333     


Q ss_pred             CcceeEEEeccCCCCcceecccCC---CCc-eeCcCCCEEEEEeCCcEEEEECC------CCceEEEe-ecCceeeEEcC
Q 004971          398 GNNQLLLENIKSPLPDISLFRFDG---SFP-SFSPKGDRIAFVEFPGVYVVNSD------GSNRRQVY-FKNAFSTVWDP  466 (721)
Q Consensus       398 ~~~~l~~~~~~~~~~~~~~~~~~~---~~~-~~SpDG~~la~~~~~~l~v~d~~------~g~~~~l~-~~~~~~~~~sp  466 (721)
                        . +.+.+..-+. .+.......   ..+ .=.||+         .+..|.-.      .+....|. ...+.++.|..
T Consensus       465 --~-~~ivnp~~G~-~~e~~~t~ell~~~~~~~~p~~---------~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr  531 (733)
T KOG0650|consen  465 --C-VLIVNPIFGD-RLEVGPTKELLASAPNESEPDA---------AVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR  531 (733)
T ss_pred             --c-eEEeCccccc-hhhhcchhhhhhcCCCccCCcc---------cceeechhhhhhhccceEEEEecCCccceeeeec
Confidence              1 3333221110 000000000   000 011222         23333222      11122333 56788999999


Q ss_pred             CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971          467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE  546 (721)
Q Consensus       467 dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~  546 (721)
                      +|.+|+.++..    .....+.|+.+....     ....+....+.+....|+|-.-+|++++    ...|.+||+...+
T Consensus       532 kGDYlatV~~~----~~~~~VliHQLSK~~-----sQ~PF~kskG~vq~v~FHPs~p~lfVaT----q~~vRiYdL~kqe  598 (733)
T KOG0650|consen  532 KGDYLATVMPD----SGNKSVLIHQLSKRK-----SQSPFRKSKGLVQRVKFHPSKPYLFVAT----QRSVRIYDLSKQE  598 (733)
T ss_pred             CCceEEEeccC----CCcceEEEEeccccc-----ccCchhhcCCceeEEEecCCCceEEEEe----ccceEEEehhHHH
Confidence            99999998731    233455555554432     1233434446778889999999998888    4789999998766


Q ss_pred             ccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC-ceEEeeecCCCCCcCCeE----------E
Q 004971          547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT-GLRKLIQSGSAGRANHPY----------F  615 (721)
Q Consensus       547 ~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~-~~~~l~~~~~~~~~~~~~----------~  615 (721)
                      .  ++.+..+...+..++.+|.|..|++++.+.       .+..+|++-+ ++.+-+.. |...+.+++          -
T Consensus       599 l--vKkL~tg~kwiS~msihp~GDnli~gs~d~-------k~~WfDldlsskPyk~lr~-H~~avr~Va~H~ryPLfas~  668 (733)
T KOG0650|consen  599 L--VKKLLTGSKWISSMSIHPNGDNLILGSYDK-------KMCWFDLDLSSKPYKTLRL-HEKAVRSVAFHKRYPLFASG  668 (733)
T ss_pred             H--HHHHhcCCeeeeeeeecCCCCeEEEecCCC-------eeEEEEcccCcchhHHhhh-hhhhhhhhhhccccceeeee
Confidence            4  666776766778999999999999999885       6777777544 22222211 333333333          4


Q ss_pred             CCCCCEEEEEEe
Q 004971          616 SPDGKSIVFTSD  627 (721)
Q Consensus       616 SpDG~~l~~~~~  627 (721)
                      |+||..++|...
T Consensus       669 sdDgtv~Vfhg~  680 (733)
T KOG0650|consen  669 SDDGTVIVFHGM  680 (733)
T ss_pred             cCCCcEEEEeee
Confidence            667777666554

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.95  E-value=1.3e-06  Score=86.79  Aligned_cols=294  Identities=13%  Similarity=0.093  Sum_probs=161.3

Q ss_pred             CEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEee--CCCCCCCCcceeEEEeccCC
Q 004971          333 KFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCR--GGSTREDGNNQLLLENIKSP  410 (721)
Q Consensus       333 ~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~--~~~~~~~~~~~l~~~~~~~~  410 (721)
                      ++++.....-..-..+++++|.++++..-...    .+....+..||||+.++...--  ....+... .-+.+++..+-
T Consensus         3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~----~g~~~~~~~spdgk~~y~a~T~~sR~~rG~Rt-Dvv~~~D~~TL   77 (342)
T PF06433_consen    3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMID----TGFLGNVALSPDGKTIYVAETFYSRGTRGERT-DVVEIWDTQTL   77 (342)
T ss_dssp             TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEE----EESSEEEEE-TTSSEEEEEEEEEEETTEEEEE-EEEEEEETTTT
T ss_pred             cEEEEECCccccccceEEEEECCCCcEEEEee----cccCCceeECCCCCEEEEEEEEEeccccccce-eEEEEEecCcC
Confidence            45555433111123579999999887432221    3344568899999999864321  11110000 12334443332


Q ss_pred             --CCcceecc-------cCCCCceeCcCCCEEEEEe---CCcEEEEECCCCce-EEEeecCceeeEEcCCCCeEEEEecC
Q 004971          411 --LPDISLFR-------FDGSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNR-RQVYFKNAFSTVWDPVREAVVYTSGG  477 (721)
Q Consensus       411 --~~~~~~~~-------~~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~-~~l~~~~~~~~~~spdg~~la~~~~~  477 (721)
                        ..++.+..       ......++|.||+++++.+   ...|.++|++.++. ..+....+..+--++.. .++..+  
T Consensus        78 ~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~-~F~~lC--  154 (342)
T PF06433_consen   78 SPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNR-GFSMLC--  154 (342)
T ss_dssp             EEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETT-EEEEEE--
T ss_pred             cccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCC-ceEEEe--
Confidence              11111111       1123468999999988873   67899999998874 34443333333223332 344444  


Q ss_pred             CCCCCCCCcEEEEEEEccCCCCccceEEccc---CC--CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE
Q 004971          478 PEFASESSEVDIISINVDDVDGVSAVRRLTT---NG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR  552 (721)
Q Consensus       478 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~---~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~  552 (721)
                           .++...-+.++.++.    ..++.+.   ..  .....++++.++.+++|.+-   ...||-.|+.+...+....
T Consensus       155 -----~DGsl~~v~Ld~~Gk----~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy---~G~v~~~dlsg~~~~~~~~  222 (342)
T PF06433_consen  155 -----GDGSLLTVTLDADGK----EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY---EGNVYSADLSGDSAKFGKP  222 (342)
T ss_dssp             -----TTSCEEEEEETSTSS----EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBT---TSEEEEEEETTSSEEEEEE
T ss_pred             -----cCCceEEEEECCCCC----EeEeeccccCCCCcccccccceECCCCeEEEEec---CCEEEEEeccCCcccccCc
Confidence                 467777777776664    2222211   11  12245678888888999887   7889999998766322222


Q ss_pred             CcC-------C---CcCceeeEEccCCCEEEEEEccCCC---CCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCC
Q 004971          553 LTE-------G---PWSDTMCNWSPDGEWIAFASDRDNP---GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG  619 (721)
Q Consensus       553 l~~-------~---~~~~~~~~~SpDG~~l~~~~~~~~~---~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG  619 (721)
                      +..       .   ++....+++++..++|++....+..   ......||.+|+++++...-..  ....+.+++.|.|.
T Consensus       223 ~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~--l~~~~~Si~Vsqd~  300 (342)
T PF06433_consen  223 WSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP--LEHPIDSIAVSQDD  300 (342)
T ss_dssp             EESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE--EEEEESEEEEESSS
T ss_pred             ccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe--CCCccceEEEccCC
Confidence            211       1   1223457888888888876654322   3456899999999987544333  22346689999999


Q ss_pred             CEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          620 KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       620 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      +=++|+-....               ..|+++|..+|+..+-..
T Consensus       301 ~P~L~~~~~~~---------------~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  301 KPLLYALSAGD---------------GTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             S-EEEEEETTT---------------TEEEEEETTT--EEEEE-
T ss_pred             CcEEEEEcCCC---------------CeEEEEeCcCCcEEeehh
Confidence            87776654432               259999998887654433

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.95  E-value=6.6e-08  Score=96.71  Aligned_cols=277  Identities=16%  Similarity=0.053  Sum_probs=168.8

Q ss_pred             EEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceE--Eeec-------------c-cCCCCcccCcE
Q 004971          313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFI--ELTR-------------F-VSPKTHHLNPF  376 (721)
Q Consensus       313 ~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~--~l~~-------------~-~~~~~~~~~~~  376 (721)
                      ..+-.|...+..++++| |+++++-++     .+..|.-|+..+|+..  .+..             . ..|...+...+
T Consensus       136 ~~~~~H~~s~~~vals~-d~~~~fsas-----k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~a  209 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSP-DDKRVFSAS-----KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLA  209 (479)
T ss_pred             eeeccccCcceEEEeec-cccceeecC-----CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEE
Confidence            33445556677889999 998877643     3346888888887632  1110             0 13445567889


Q ss_pred             EcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCce-E
Q 004971          377 ISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNR-R  452 (721)
Q Consensus       377 ~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~-~  452 (721)
                      .|+||++|++...+.-         +.+++..+.  ...+...+..+..++|-..-..++.. .+..+.+|+++.-.. .
T Consensus       210 vS~Dgkylatgg~d~~---------v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve  280 (479)
T KOG0299|consen  210 VSSDGKYLATGGRDRH---------VQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE  280 (479)
T ss_pred             EcCCCcEEEecCCCce---------EEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH
Confidence            9999999998544333         445554433  33333344444556665444455555 477889998875432 2


Q ss_pred             EEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-CCCCCcceEEccCCCEEEEEE
Q 004971          453 QVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRS  529 (721)
Q Consensus       453 ~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s  529 (721)
                      .++  ...+..+.-..-++-+-+.       ..+..+++|.+....       +.+.. +.+....++|-.| ..++..+
T Consensus       281 tlyGHqd~v~~IdaL~reR~vtVG-------grDrT~rlwKi~ees-------qlifrg~~~sidcv~~In~-~HfvsGS  345 (479)
T KOG0299|consen  281 TLYGHQDGVLGIDALSRERCVTVG-------GRDRTVRLWKIPEES-------QLIFRGGEGSIDCVAFIND-EHFVSGS  345 (479)
T ss_pred             HHhCCccceeeechhcccceEEec-------cccceeEEEeccccc-------eeeeeCCCCCeeeEEEecc-cceeecc
Confidence            222  3344455544444444333       257899999995432       22222 2234555566544 4566666


Q ss_pred             eeCCceeEEEEECCCCcccceEECcCC----------CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC--c
Q 004971          530 TRTGYKNLYIMDAEGGEGYGLHRLTEG----------PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT--G  597 (721)
Q Consensus       530 ~~~g~~~l~~~d~~~g~~~~~~~l~~~----------~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~--~  597 (721)
                      +   +..|++|++...++--..++..+          +..++.++..|....++.++.++       .|.+|-+..+  .
T Consensus       346 d---nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G-------~vrLW~i~~g~r~  415 (479)
T KOG0299|consen  346 D---NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSG-------CVRLWKIEDGLRA  415 (479)
T ss_pred             C---CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCC-------ceEEEEecCCccc
Confidence            6   78999999987765222222211          12457788889888887777764       7888888776  3


Q ss_pred             eEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       598 ~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      ...+......+.++.++|+++|++|+......
T Consensus       416 i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkE  447 (479)
T KOG0299|consen  416 INLLYSLSLVGFVNSLAFSNSGKRIVAGIGKE  447 (479)
T ss_pred             cceeeecccccEEEEEEEccCCCEEEEecccc
Confidence            44444444567889999999999887765443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=98.95  E-value=6.5e-08  Score=97.35  Aligned_cols=198  Identities=11%  Similarity=0.094  Sum_probs=136.1

Q ss_pred             CCcEEEEECCCCceE-EEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCC
Q 004971          438 FPGVYVVNSDGSNRR-QVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNN  513 (721)
Q Consensus       438 ~~~l~v~d~~~g~~~-~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~  513 (721)
                      .+.+.+||+...... .+.  ...+..+.+.-...+||.++       ..+.+.|..+..+.     ....++... ..+
T Consensus       100 ~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs-------~gGdiiih~~~t~~-----~tt~f~~~sgqsv  167 (673)
T KOG4378|consen  100 SGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVS-------DGGDIIIHGTKTKQ-----KTTTFTIDSGQSV  167 (673)
T ss_pred             CceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEec-------cCCcEEEEecccCc-----cccceecCCCCeE
Confidence            567899999854332 222  34567788888899999887       34677776665543     334454443 355


Q ss_pred             cceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971          514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       514 ~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                      ..+.|||-.+.|+.....  +..+.+||+.+..+ .......+......+.|||-...|++.-.-.      ..|++||.
T Consensus       168 Rll~ys~skr~lL~~asd--~G~VtlwDv~g~sp-~~~~~~~HsAP~~gicfspsne~l~vsVG~D------kki~~yD~  238 (673)
T KOG4378|consen  168 RLLRYSPSKRFLLSIASD--KGAVTLWDVQGMSP-IFHASEAHSAPCRGICFSPSNEALLVSVGYD------KKINIYDI  238 (673)
T ss_pred             EEeecccccceeeEeecc--CCeEEEEeccCCCc-ccchhhhccCCcCcceecCCccceEEEeccc------ceEEEeec
Confidence            678999999988776543  56788999986553 1122223444556789999877666554322      48999999


Q ss_pred             CCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC--eEEeccCCCCCCCc
Q 004971          594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD--LKRLTQNSFEDGTP  671 (721)
Q Consensus       594 ~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~lt~~~~~~~~~  671 (721)
                      ...+......  .......++|+++|.+|+....++                 +|+.||+.+.+  ++.+..|...+...
T Consensus       239 ~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G-----------------~~i~YD~R~~k~Pv~v~sah~~sVt~v  299 (673)
T KOG4378|consen  239 RSQASTDRLT--YSHPLSTVAFSECGTYLCAGNSKG-----------------ELIAYDMRSTKAPVAVRSAHDASVTRV  299 (673)
T ss_pred             ccccccceee--ecCCcceeeecCCceEEEeecCCc-----------------eEEEEecccCCCCceEeeecccceeEE
Confidence            8765443322  345678899999999998766654                 59999998754  46777788888888


Q ss_pred             eecC
Q 004971          672 AWGP  675 (721)
Q Consensus       672 ~~sp  675 (721)
                      +|-|
T Consensus       300 afq~  303 (673)
T KOG4378|consen  300 AFQP  303 (673)
T ss_pred             Eeee
Confidence            8855

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.94  E-value=6.4e-08  Score=95.31  Aligned_cols=278  Identities=15%  Similarity=0.132  Sum_probs=156.4

Q ss_pred             cCceeecCCCC-EEEEEEecCCCCeeeEEEEECCCC-------ceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971          323 FTPATSPGNNK-FIAVATRRPTSSYRHIELFDLVKN-------KFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST  394 (721)
Q Consensus       323 ~~~~~sp~dG~-~la~~~~~~g~~~~~l~l~dl~tg-------~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~  394 (721)
                      ..+.|.+ +.. .++.     ++.+..|++|-+..+       +..-+..+..|...+..+.|+|+|..|+...+.+.  
T Consensus        17 ~s~dfq~-n~~~~laT-----~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~--   88 (434)
T KOG1009|consen   17 YSVDFQK-NSLNKLAT-----AGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE--   88 (434)
T ss_pred             EEEEecc-Ccccceec-----ccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce--
Confidence            4445555 443 4444     223444666654432       22334445566777888999999999987655444  


Q ss_pred             CCCCcceeEEEe------ccC-----CCC-----cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--
Q 004971          395 REDGNNQLLLEN------IKS-----PLP-----DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--  455 (721)
Q Consensus       395 ~~~~~~~l~~~~------~~~-----~~~-----~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--  455 (721)
                           .-+|...      -++     ++.     .+.....+...++|+||+..+++.+ +..+++||+..|....+.  
T Consensus        89 -----v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d  163 (434)
T KOG1009|consen   89 -----VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD  163 (434)
T ss_pred             -----EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc
Confidence                 2233222      011     000     0111223455689999999998884 889999999988876665  


Q ss_pred             -ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC---------------CCCccceEEcccCC---CCCcce
Q 004971          456 -FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD---------------VDGVSAVRRLTTNG---KNNAFP  516 (721)
Q Consensus       456 -~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~---------------~~~~~~~~~l~~~~---~~~~~~  516 (721)
                       ...+..++|.|-+++++..+..+       +.+.+.+....               ....+...+|...+   .....+
T Consensus       164 h~~yvqgvawDpl~qyv~s~s~dr-------~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl  236 (434)
T KOG1009|consen  164 HEHYVQGVAWDPLNQYVASKSSDR-------HPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL  236 (434)
T ss_pred             cccccceeecchhhhhhhhhccCc-------ccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence             45677899999999998765321       12222221111               00112223333322   233457


Q ss_pred             EEccCCCEEEEEEeeC---C---ceeEEEEECCCCcccceEECcCCCcCceeeEEc------------------cCCCEE
Q 004971          517 SVSPDGKWIVFRSTRT---G---YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS------------------PDGEWI  572 (721)
Q Consensus       517 ~~SpDg~~l~~~s~~~---g---~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~S------------------pDG~~l  572 (721)
                      +|+|||..|+.-+..-   +   .+.-|+++-..-+ +...++....-....+.|+                  |-+-.+
T Consensus       237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~-rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf  315 (434)
T KOG1009|consen  237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK-RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF  315 (434)
T ss_pred             ccCCCCcEEEcccceeeeCCceeeceeEeecccccc-CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEE
Confidence            9999999887654321   1   2244555433211 1133333222111222222                  222223


Q ss_pred             EEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          573 AFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      +++..+        .+|+||.+.-++..+...-|...+..++||+||..|+.++.++
T Consensus       316 aiAt~~--------svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DG  364 (434)
T KOG1009|consen  316 AIATKN--------SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDG  364 (434)
T ss_pred             EEeecc--------eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCC
Confidence            333333        7999998776655554444777889999999999999888776

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.94  E-value=1.6e-08  Score=104.95  Aligned_cols=263  Identities=11%  Similarity=0.096  Sum_probs=161.8

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      .+.+++|.| ||..++.+..      .++.+||...|.  .+....+|...+..++||.||++++....+..       .
T Consensus        14 ci~d~afkP-DGsqL~lAAg------~rlliyD~ndG~--llqtLKgHKDtVycVAys~dGkrFASG~aDK~-------V   77 (1081)
T KOG1538|consen   14 CINDIAFKP-DGTQLILAAG------SRLLVYDTSDGT--LLQPLKGHKDTVYCVAYAKDGKRFASGSADKS-------V   77 (1081)
T ss_pred             chheeEECC-CCceEEEecC------CEEEEEeCCCcc--cccccccccceEEEEEEccCCceeccCCCcee-------E
Confidence            467899999 9999988542      349999999887  55556777888899999999999876544443       2


Q ss_pred             eeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCC
Q 004971          401 QLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPE  479 (721)
Q Consensus       401 ~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~  479 (721)
                      .+|...+.+-.+  ....-...-+.|.|-...|+..+-++.-+|..+......-. ...+...+|..||++++...    
T Consensus        78 I~W~~klEG~Lk--YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~----  151 (1081)
T KOG1538|consen   78 IIWTSKLEGILK--YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGM----  151 (1081)
T ss_pred             EEecccccceee--eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEec----
Confidence            233322221100  00111123357777777777775555555655443322211 34567889999999999875    


Q ss_pred             CCCCCCcEEEEEEEccCCCCccceEEccc---CCCCCcceEEccCCC-----EEEEEEeeCCceeEEEEECCCCcccceE
Q 004971          480 FASESSEVDIISINVDDVDGVSAVRRLTT---NGKNNAFPSVSPDGK-----WIVFRSTRTGYKNLYIMDAEGGEGYGLH  551 (721)
Q Consensus       480 ~~~~~~~~~i~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~SpDg~-----~l~~~s~~~g~~~l~~~d~~~g~~~~~~  551 (721)
                         .++++.|-  +..+.    +...+..   ....+.+.+|+|...     .+++...   ...|-.+.+++..   +.
T Consensus       152 ---~nGTIsiR--Nk~gE----ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW---~qTLSFy~LsG~~---Ig  216 (1081)
T KOG1538|consen  152 ---FNGTISIR--NKNGE----EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW---GQTLSFYQLSGKQ---IG  216 (1081)
T ss_pred             ---cCceEEee--cCCCC----cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec---cceeEEEEeccee---ec
Confidence               45666665  22221    2233333   224567778888633     3444444   4455555565332   21


Q ss_pred             ECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec-CCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS-GSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       552 ~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      .-..-.+...-+++-|+|.+++.+..+.       .+.++.-++   .++-.. .....++.++..|++++++....+++
T Consensus       217 k~r~L~FdP~CisYf~NGEy~LiGGsdk-------~L~~fTR~G---vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGT  286 (1081)
T KOG1538|consen  217 KDRALNFDPCCISYFTNGEYILLGGSDK-------QLSLFTRDG---VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGT  286 (1081)
T ss_pred             ccccCCCCchhheeccCCcEEEEccCCC-------ceEEEeecC---eEEeeccccceeEEEEEEccCCceEEEEEccCe
Confidence            1111123345678889999999998874       566665444   333221 13456778899999999998888875

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.94  E-value=3.4e-08  Score=95.72  Aligned_cols=188  Identities=18%  Similarity=0.207  Sum_probs=123.1

Q ss_pred             CCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCe-EEEEecCCCCCCCCCcEEEEEEEc
Q 004971          420 DGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREA-VVYTSGGPEFASESSEVDIISINV  494 (721)
Q Consensus       420 ~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~-la~~~~~~~~~~~~~~~~i~~~~~  494 (721)
                      ..+.++|++-=-.+++. .+..|.+|+-....+..|.   ...+..++|-|.+.. |++.+        ..-+-||..+.
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgC--------r~gIciW~~s~  171 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGC--------RAGICIWSDSR  171 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeee--------cceeEEEEcCc
Confidence            34567888732223333 4777889988776666666   567889999997654 55554        35677777664


Q ss_pred             cCCCC-------ccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEE
Q 004971          495 DDVDG-------VSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNW  565 (721)
Q Consensus       495 ~~~~~-------~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~  565 (721)
                      .....       ......+...+ ..+..++|.+||..++.++-.  +..|.+||+++|..   .+|. .+.+....+.|
T Consensus       172 tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~g--sssi~iWdpdtg~~---~pL~~~glgg~slLkw  246 (445)
T KOG2139|consen  172 TLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFG--SSSIMIWDPDTGQK---IPLIPKGLGGFSLLKW  246 (445)
T ss_pred             ccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccC--cceEEEEcCCCCCc---ccccccCCCceeeEEE
Confidence            33200       00111111111 356778999999999888753  67899999999884   3443 44555678999


Q ss_pred             ccCCCEEEEEEccCCCCCCceeEEEEecC-CCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          566 SPDGEWIAFASDRDNPGSGSFEMYLIHPN-GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       566 SpDG~~l~~~~~~~~~~~~~~~i~~~d~~-~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      ||||.+|+.+.-+.       ...+|... .....+...  ..+.+....|||+|++|+|+....
T Consensus       247 SPdgd~lfaAt~da-------vfrlw~e~q~wt~erw~l--gsgrvqtacWspcGsfLLf~~sgs  302 (445)
T KOG2139|consen  247 SPDGDVLFAATCDA-------VFRLWQENQSWTKERWIL--GSGRVQTACWSPCGSFLLFACSGS  302 (445)
T ss_pred             cCCCCEEEEecccc-------eeeeehhcccceecceec--cCCceeeeeecCCCCEEEEEEcCC
Confidence            99999998888763       45556332 222222222  345888899999999999988755

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.94  E-value=6.7e-08  Score=106.34  Aligned_cols=191  Identities=14%  Similarity=0.069  Sum_probs=125.1

Q ss_pred             EEEEeCCcEEEEECCCCceEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc
Q 004971          433 IAFVEFPGVYVVNSDGSNRRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT  507 (721)
Q Consensus       433 la~~~~~~l~v~d~~~g~~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~  507 (721)
                      ++...++.|..++  ++....+.     ...+..++.||||++++|+..... ...+....||..+..+     ..+.++
T Consensus       323 ~~~v~~G~l~~~~--~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~-~~~d~~s~Lwv~~~gg-----~~~~lt  394 (591)
T PRK13616        323 LHALVDGSLVSVD--GQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGR-GAPDPASSLWVGPLGG-----VAVQVL  394 (591)
T ss_pred             ceEEECCeEEEec--CCCeeeCCCccccccCcccceECCCCCEEEEEEeecC-CCCCcceEEEEEeCCC-----cceeee
Confidence            3344466666553  33333333     235678999999999999874222 1234567888888644     346666


Q ss_pred             cCCCCCcceEEccCCCEEEEEEee---------CCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971          508 TNGKNNAFPSVSPDGKWIVFRSTR---------TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       508 ~~~~~~~~~~~SpDg~~l~~~s~~---------~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~  578 (721)
                      ... ....|.|||||++|+|..+.         .+..+|+++++++++.   ..  .....+..+.|||||++|+|....
T Consensus       395 ~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~---~~--~~~g~Issl~wSpDG~RiA~i~~g  468 (591)
T PRK13616        395 EGH-SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV---AS--RVPGPISELQLSRDGVRAAMIIGG  468 (591)
T ss_pred             cCC-CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchh---hh--ccCCCcCeEEECCCCCEEEEEECC
Confidence            555 47889999999999888643         2445788888887773   32  223347899999999999998842


Q ss_pred             CCCCCCceeEEE---EecCCCceEEeee-----cCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEE
Q 004971          579 DNPGSGSFEMYL---IHPNGTGLRKLIQ-----SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK  650 (721)
Q Consensus       579 ~~~~~~~~~i~~---~d~~~~~~~~l~~-----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  650 (721)
                              +||+   ....+|+ ..++.     ........++.|..|++.+ ........               .+|.
T Consensus       469 --------~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~---------------~v~~  523 (591)
T PRK13616        469 --------KVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEH---------------PVWY  523 (591)
T ss_pred             --------EEEEEEEEeCCCCc-eeecccEEeecccCCccccceEecCCEEE-EEecCCCC---------------ceEE
Confidence                    6877   5555665 33421     1122234778999999954 44443332               4999


Q ss_pred             EEcCCCCeEEec
Q 004971          651 IKLDGSDLKRLT  662 (721)
Q Consensus       651 ~d~~~~~~~~lt  662 (721)
                      ++++|...+.+.
T Consensus       524 v~vDG~~~~~~~  535 (591)
T PRK13616        524 VNLDGSNSDALP  535 (591)
T ss_pred             EecCCccccccC
Confidence            999988766543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.93  E-value=1.2e-08  Score=97.94  Aligned_cols=252  Identities=14%  Similarity=0.061  Sum_probs=163.1

Q ss_pred             CCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC
Q 004971          288 EDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS  367 (721)
Q Consensus       288 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~  367 (721)
                      .+..+.||+.....         ....++++...+.-+.+   |.+.|+.     |+.+..+.+||..+|+  .+.....
T Consensus       215 rDnTikiWD~n~~~---------c~~~L~GHtGSVLCLqy---d~rviis-----GSSDsTvrvWDv~tge--~l~tlih  275 (499)
T KOG0281|consen  215 RDNTIKIWDKNSLE---------CLKILTGHTGSVLCLQY---DERVIVS-----GSSDSTVRVWDVNTGE--PLNTLIH  275 (499)
T ss_pred             ccCceEEeccccHH---------HHHhhhcCCCcEEeeec---cceEEEe-----cCCCceEEEEeccCCc--hhhHHhh
Confidence            47788999654433         45566777665555556   7664444     5677889999999998  4444445


Q ss_pred             CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee------cccCCCCceeCcCCCEEEEE-eCCc
Q 004971          368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL------FRFDGSFPSFSPKGDRIAFV-EFPG  440 (721)
Q Consensus       368 ~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~SpDG~~la~~-~~~~  440 (721)
                      |-..+..+.|+  ..+++..+.+..         +.++++..+. .++.      ....+..+.  -|.++|+.+ ++..
T Consensus       276 HceaVLhlrf~--ng~mvtcSkDrs---------iaVWdm~sps-~it~rrVLvGHrAaVNvVd--fd~kyIVsASgDRT  341 (499)
T KOG0281|consen  276 HCEAVLHLRFS--NGYMVTCSKDRS---------IAVWDMASPT-DITLRRVLVGHRAAVNVVD--FDDKYIVSASGDRT  341 (499)
T ss_pred             hcceeEEEEEe--CCEEEEecCCce---------eEEEeccCch-HHHHHHHHhhhhhheeeec--cccceEEEecCCce
Confidence            56667778887  456666555444         4455555442 1111      111222233  356677776 5889


Q ss_pred             EEEEECCCCceEEEeecCceeeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEc
Q 004971          441 VYVVNSDGSNRRQVYFKNAFSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVS  519 (721)
Q Consensus       441 l~v~d~~~g~~~~l~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S  519 (721)
                      |.+|+..+++..++..+.-..++--. .|+.++..+       .+..++||++....     .++.|..++.-+....| 
T Consensus       342 ikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGS-------SDntIRlwdi~~G~-----cLRvLeGHEeLvRciRF-  408 (499)
T KOG0281|consen  342 IKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGS-------SDNTIRLWDIECGA-----CLRVLEGHEELVRCIRF-  408 (499)
T ss_pred             EEEEeccceeeehhhhcccccceehhccCeEEEecC-------CCceEEEEeccccH-----HHHHHhchHHhhhheee-
Confidence            99999999986655534333333333 344444443       67899999998754     67778888766777777 


Q ss_pred             cCCCEEEEEEeeCCceeEEEEECCCCccc-------ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEe
Q 004971          520 PDGKWIVFRSTRTGYKNLYIMDAEGGEGY-------GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH  592 (721)
Q Consensus       520 pDg~~l~~~s~~~g~~~l~~~d~~~g~~~-------~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d  592 (721)
                       |.++|+...-   +..|.+||+..+...       .+..+..+.+.+..+.|.  ..+|+.++.+.       .|.+||
T Consensus       409 -d~krIVSGaY---DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHdd-------tILiWd  475 (499)
T KOG0281|consen  409 -DNKRIVSGAY---DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDD-------TILIWD  475 (499)
T ss_pred             -cCceeeeccc---cceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCC-------eEEEEE
Confidence             5788987776   788999999877531       122334556667778874  56777776664       899999


Q ss_pred             cCCCce
Q 004971          593 PNGTGL  598 (721)
Q Consensus       593 ~~~~~~  598 (721)
                      ...+..
T Consensus       476 Fl~~~~  481 (499)
T KOG0281|consen  476 FLNGPP  481 (499)
T ss_pred             cCCCCc
Confidence            877643

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=98.93  E-value=1.2e-07  Score=90.71  Aligned_cols=181  Identities=13%  Similarity=0.099  Sum_probs=121.9

Q ss_pred             CceeCcCCCEEEEEeCCcEEEEECC-CCceE----EEe------ecCceeeEEcCCCC-eEEEEecCCCCCCCCCcEEEE
Q 004971          423 FPSFSPKGDRIAFVEFPGVYVVNSD-GSNRR----QVY------FKNAFSTVWDPVRE-AVVYTSGGPEFASESSEVDII  490 (721)
Q Consensus       423 ~~~~SpDG~~la~~~~~~l~v~d~~-~g~~~----~l~------~~~~~~~~~spdg~-~la~~~~~~~~~~~~~~~~i~  490 (721)
                      .++|||||.+|+..-+..|.++|+. .|...    .++      .+.+..++++|-.. .+++.+.       ...+.||
T Consensus       163 sL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY-------~q~~giy  235 (406)
T KOG2919|consen  163 SLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSY-------GQRVGIY  235 (406)
T ss_pred             eEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecc-------cceeeeE
Confidence            4799999999988888899999983 34311    111      34567899999655 6666653       3456666


Q ss_pred             EEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCc-Cc--eeeEEcc
Q 004971          491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW-SD--TMCNWSP  567 (721)
Q Consensus       491 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~-~~--~~~~~Sp  567 (721)
                      .-+..+     ....+..+.+.+.++.|.+||.+|+..+..  +..|..||+..-.. .+-.|..+.. ..  ..+...|
T Consensus       236 ~~~~~~-----pl~llggh~gGvThL~~~edGn~lfsGaRk--~dkIl~WDiR~~~~-pv~~L~rhv~~TNQRI~FDld~  307 (406)
T KOG2919|consen  236 NDDGRR-----PLQLLGGHGGGVTHLQWCEDGNKLFSGARK--DDKILCWDIRYSRD-PVYALERHVGDTNQRILFDLDP  307 (406)
T ss_pred             ecCCCC-----ceeeecccCCCeeeEEeccCcCeecccccC--CCeEEEEeehhccc-hhhhhhhhccCccceEEEecCC
Confidence            655433     556666777889999999999999877654  56899999875331 1222322222 11  2345579


Q ss_pred             CCCEEEEEEccCCCCCCceeEEEEecCC-CceEEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971          568 DGEWIAFASDRDNPGSGSFEMYLIHPNG-TGLRKLIQSGSAGRANHPYFSPDGKSIVFTS  626 (721)
Q Consensus       568 DG~~l~~~~~~~~~~~~~~~i~~~d~~~-~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~  626 (721)
                      +|++|+.+..++       .|.+||+++ |....++.. +..-++.+++.|--..++.++
T Consensus       308 ~~~~LasG~tdG-------~V~vwdlk~~gn~~sv~~~-~sd~vNgvslnP~mpilatss  359 (406)
T KOG2919|consen  308 KGEILASGDTDG-------SVRVWDLKDLGNEVSVTGN-YSDTVNGVSLNPIMPILATSS  359 (406)
T ss_pred             CCceeeccCCCc-------cEEEEecCCCCCccccccc-ccccccceecCcccceeeecc
Confidence            999998887775       899999987 554444432 455567788888755555444

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.93  E-value=4.5e-08  Score=98.61  Aligned_cols=258  Identities=14%  Similarity=0.051  Sum_probs=170.8

Q ss_pred             CcccCcEEcCCCCE-EEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECC
Q 004971          370 THHLNPFISPDSSR-VGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSD  447 (721)
Q Consensus       370 ~~~~~~~~Spdg~~-l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~  447 (721)
                      ..+..+.|||..-+ ++.++. ..       .+||........+.+..+........|-.||+.++... .+.+.++|..
T Consensus        27 ~~vssl~fsp~~P~d~aVt~S-~r-------vqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k   98 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPYDFAVTSS-VR-------VQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK   98 (487)
T ss_pred             CcceeEecCCCCCCceEEecc-cE-------EEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence            34567788885433 333222 22       33444333333333333444455678889998888774 6789999966


Q ss_pred             CCce-EEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCE
Q 004971          448 GSNR-RQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKW  524 (721)
Q Consensus       448 ~g~~-~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~  524 (721)
                      +... +.+.  ...+....|+|++..++...      .++..+.+|+++...     ....+..+...+...+|+|-...
T Consensus        99 ~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~------sDd~v~k~~d~s~a~-----v~~~l~~htDYVR~g~~~~~~~h  167 (487)
T KOG0310|consen   99 SRVILRQLYAHQAPVHVTKFSPQDNTMLVSG------SDDKVVKYWDLSTAY-----VQAELSGHTDYVRCGDISPANDH  167 (487)
T ss_pred             cHHHHHHHhhccCceeEEEecccCCeEEEec------CCCceEEEEEcCCcE-----EEEEecCCcceeEeeccccCCCe
Confidence            5332 2222  45667788999988888776      367778888887643     23466777778888999999998


Q ss_pred             EEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec
Q 004971          525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS  604 (721)
Q Consensus       525 l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~  604 (721)
                      |++...-  +..|.+||...... .+..+. +...+..+.+-|.|..|+.++..        .+.+||+.+|........
T Consensus       168 ivvtGsY--Dg~vrl~DtR~~~~-~v~eln-hg~pVe~vl~lpsgs~iasAgGn--------~vkVWDl~~G~qll~~~~  235 (487)
T KOG0310|consen  168 IVVTGSY--DGKVRLWDTRSLTS-RVVELN-HGCPVESVLALPSGSLIASAGGN--------SVKVWDLTTGGQLLTSMF  235 (487)
T ss_pred             EEEecCC--CceEEEEEeccCCc-eeEEec-CCCceeeEEEcCCCCEEEEcCCC--------eEEEEEecCCceehhhhh
Confidence            8887654  55788899876531 133343 34456788899999988877765        799999985543221111


Q ss_pred             CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecC
Q 004971          605 GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP  675 (721)
Q Consensus       605 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp  675 (721)
                      .|...++++.+.-|++.|+..+-+.                 ++-++|+..=++..=-...+.+.+.+.||
T Consensus       236 ~H~KtVTcL~l~s~~~rLlS~sLD~-----------------~VKVfd~t~~Kvv~s~~~~~pvLsiavs~  289 (487)
T KOG0310|consen  236 NHNKTVTCLRLASDSTRLLSGSLDR-----------------HVKVFDTTNYKVVHSWKYPGPVLSIAVSP  289 (487)
T ss_pred             cccceEEEEEeecCCceEeeccccc-----------------ceEEEEccceEEEEeeecccceeeEEecC
Confidence            2667788999999999998877765                 47777855544443334566677777787

>PRK10115 protease 2; Provisional

Probab=98.89  E-value=3.3e-06  Score=95.81  Aligned_cols=255  Identities=12%  Similarity=0.094  Sum_probs=151.8

Q ss_pred             ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-------CCcEEEE
Q 004971          372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-------FPGVYVV  444 (721)
Q Consensus       372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-------~~~l~v~  444 (721)
                      +..+.|||||++|++....++...    ..+++.++.++.............++|++||+.|+|..       ...||++
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~----~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQ----YGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEE----EEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            456789999999999876665332    56788888765311122111123489999999999982       1479999


Q ss_pred             ECCCC--ceEEEeec---Cce-eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceE
Q 004971          445 NSDGS--NRRQVYFK---NAF-STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPS  517 (721)
Q Consensus       445 d~~~g--~~~~l~~~---~~~-~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~  517 (721)
                      ++.++  +.+.|...   ... ....+.|++++++.+..    ..+..+.++..+....    ....+.... ....  .
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~----~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~--~  274 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLAS----ATTSEVLLLDAELADA----EPFVFLPRRKDHEY--S  274 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEEC----CccccEEEEECcCCCC----CceEEEECCCCCEE--E
Confidence            99888  44555521   122 23335599988866532    1234555555434322    223333322 2222  2


Q ss_pred             EccCCCEEEEEEeeC-CceeEEEEECCC-CcccceEECcCC--CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971          518 VSPDGKWIVFRSTRT-GYKNLYIMDAEG-GEGYGLHRLTEG--PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       518 ~SpDg~~l~~~s~~~-g~~~l~~~d~~~-g~~~~~~~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                      +...+..+++.++.+ ....|..+++.+ ++   .+.+...  ...+..+.++  +++|++...+.    +...|++++.
T Consensus       275 ~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~---~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~----g~~~l~~~~~  345 (686)
T PRK10115        275 LDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQ---WEELIPPRENIMLEGFTLF--TDWLVVEERQR----GLTSLRQINR  345 (686)
T ss_pred             EEeCCCEEEEEEcCCCCCceEEEecCCCccc---CeEEECCCCCCEEEEEEEE--CCEEEEEEEeC----CEEEEEEEcC
Confidence            223356777777653 455788888873 33   3344433  2345566666  66888888774    7788999998


Q ss_pred             CCCceEEeeecCCCCCcCCeEEC--CCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          594 NGTGLRKLIQSGSAGRANHPYFS--PDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       594 ~~~~~~~l~~~~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      .+++.+.+... .......+.++  +++..+++....-..             +.++|.+|+++++.+.|+.
T Consensus       346 ~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ss~~~-------------P~~~y~~d~~~~~~~~l~~  403 (686)
T PRK10115        346 KTREVIGIAFD-DPAYVTWIAYNPEPETSRLRYGYSSMTT-------------PDTLFELDMDTGERRVLKQ  403 (686)
T ss_pred             CCCceEEecCC-CCceEeeecccCCCCCceEEEEEecCCC-------------CCEEEEEECCCCcEEEEEe
Confidence            77666665421 11222223344  556666555443332             3579999999988888876

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.87  E-value=9.5e-07  Score=86.81  Aligned_cols=220  Identities=18%  Similarity=0.153  Sum_probs=145.3

Q ss_pred             CCCceeCc-CCCEEEEEe--CCcEEEEECCCCceEEEe---ecCc--eeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971          421 GSFPSFSP-KGDRIAFVE--FPGVYVVNSDGSNRRQVY---FKNA--FSTVWDPVREAVVYTSGGPEFASESSEVDIISI  492 (721)
Q Consensus       421 ~~~~~~Sp-DG~~la~~~--~~~l~v~d~~~g~~~~l~---~~~~--~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~  492 (721)
                      +..++.+| ++..++|..  ..-+.++|..+++..+..   .+..  ..-.||+||++|+.+.+  +++...+.+-||+.
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEn--d~~~g~G~IgVyd~   84 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEN--DYETGRGVIGVYDA   84 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecc--ccCCCcEEEEEEEC
Confidence            44567888 455566664  456888999988865443   2222  36899999999998754  45566778888887


Q ss_pred             EccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEee------CC---------ceeEEEEECCCCcccceEECcC--
Q 004971          493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR------TG---------YKNLYIMDAEGGEGYGLHRLTE--  555 (721)
Q Consensus       493 ~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~------~g---------~~~l~~~d~~~g~~~~~~~l~~--  555 (721)
                      ...-    ..+..+..+.-....+.+.|||+.|+++...      .|         ...|..+|..+|+......+..  
T Consensus        85 ~~~~----~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~  160 (305)
T PF07433_consen   85 ARGY----RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL  160 (305)
T ss_pred             cCCc----EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence            7221    2445566666566778999999999987632      11         3468888999998622233532  


Q ss_pred             CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec-----CCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS-----GSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       556 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      +...+.++++++||.-++-...++.......-|.+++... ..+.+...     ...+++.++++++||.+++.++.+.+
T Consensus       161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg  239 (305)
T PF07433_consen  161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG  239 (305)
T ss_pred             cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence            4456789999999985554444433222334455555433 22222211     12456788999999999999998886


Q ss_pred             CcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          631 ISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       631 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      .                +.+||.++++......
T Consensus       240 ~----------------~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  240 R----------------VAVWDAATGRLLGSVP  256 (305)
T ss_pred             E----------------EEEEECCCCCEeeccc
Confidence            3                8899999988765543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=3.9e-07  Score=91.52  Aligned_cols=217  Identities=10%  Similarity=0.013  Sum_probs=148.4

Q ss_pred             cCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971          419 FDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV  494 (721)
Q Consensus       419 ~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~  494 (721)
                      .....++-+|+|.+|+.. -.+.||+|.+.+|....+.   -..++.+.|+-||..|+..+       .++.+.+|.+..
T Consensus        82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgs-------kDg~V~vW~l~~  154 (476)
T KOG0646|consen   82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGS-------KDGAVLVWLLTD  154 (476)
T ss_pred             cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecC-------CCccEEEEEEEe
Confidence            334556789999888777 5889999999999854333   35688999999999998876       689999997753


Q ss_pred             cC----CCCccceEEcccCCCCCcceEEccC--CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccC
Q 004971          495 DD----VDGVSAVRRLTTNGKNNAFPSVSPD--GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD  568 (721)
Q Consensus       495 ~~----~~~~~~~~~l~~~~~~~~~~~~SpD--g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD  568 (721)
                      --    .........+..|.-.+..+...+.  ..+|+.++.   +..+.+||+..|..  +..+.. +..+..++.+|-
T Consensus       155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~---D~t~k~wdlS~g~L--Llti~f-p~si~av~lDpa  228 (476)
T KOG0646|consen  155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE---DRTIKLWDLSLGVL--LLTITF-PSSIKAVALDPA  228 (476)
T ss_pred             ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC---CceEEEEEecccee--eEEEec-CCcceeEEEccc
Confidence            11    0011233445555544555544443  456777777   88999999999985  444443 345688999999


Q ss_pred             CCEEEEEEccCCCCCCceeEEEEecCCCc----------------eEEeeecCCCC--CcCCeEECCCCCEEEEEEecCC
Q 004971          569 GEWIAFASDRDNPGSGSFEMYLIHPNGTG----------------LRKLIQSGSAG--RANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       569 G~~l~~~~~~~~~~~~~~~i~~~d~~~~~----------------~~~l~~~~~~~--~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      ++.++++..++       .||+.++.+-.                ..+... ++.+  .+..++.+-||..|+..+.++ 
T Consensus       229 e~~~yiGt~~G-------~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~-Gh~~~~~ITcLais~DgtlLlSGd~dg-  299 (476)
T KOG0646|consen  229 ERVVYIGTEEG-------KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV-GHENESAITCLAISTDGTLLLSGDEDG-  299 (476)
T ss_pred             ccEEEecCCcc-------eEEeeehhcCCcccccccccccccccceeeeec-cccCCcceeEEEEecCccEEEeeCCCC-
Confidence            99888888775       67766653321                111111 2444  678899999999888766655 


Q ss_pred             CcCCCCCCCCCCCCCccEEEEEcCCCCe-EEeccCCCCCCCcee
Q 004971          631 ISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLTQNSFEDGTPAW  673 (721)
Q Consensus       631 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt~~~~~~~~~~~  673 (721)
                                      .+-+||..+.+. +.++...+.+....+
T Consensus       300 ----------------~VcvWdi~S~Q~iRtl~~~kgpVtnL~i  327 (476)
T KOG0646|consen  300 ----------------KVCVWDIYSKQCIRTLQTSKGPVTNLQI  327 (476)
T ss_pred             ----------------CEEEEecchHHHHHHHhhhccccceeEe
Confidence                            388899888764 555544455566666

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=98.86  E-value=1.2e-06  Score=85.73  Aligned_cols=271  Identities=15%  Similarity=0.084  Sum_probs=166.0

Q ss_pred             CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEc-CCC--CEEEEEEeeCCCC
Q 004971          318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFIS-PDS--SRVGYHKCRGGST  394 (721)
Q Consensus       318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~S-pdg--~~l~~~~~~~~~~  394 (721)
                      +.-.+..+..   .+++|+..     .+++.+++||++.....++   .++...+..++|- ++.  ..++.++.+..  
T Consensus       104 hdDWVSsv~~---~~~~Iltg-----sYDg~~riWd~~Gk~~~~~---~Ght~~ik~v~~v~~n~~~~~fvsas~Dqt--  170 (423)
T KOG0313|consen  104 HDDWVSSVKG---ASKWILTG-----SYDGTSRIWDLKGKSIKTI---VGHTGPIKSVAWVIKNSSSCLFVSASMDQT--  170 (423)
T ss_pred             chhhhhhhcc---cCceEEEe-----ecCCeeEEEecCCceEEEE---ecCCcceeeeEEEecCCccceEEEecCCce--
Confidence            3334555555   34788764     3556699999875433333   4556666655552 222  23555444444  


Q ss_pred             CCCCcceeEEEeccCCCCcce----ecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCce------------------
Q 004971          395 REDGNNQLLLENIKSPLPDIS----LFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNR------------------  451 (721)
Q Consensus       395 ~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~------------------  451 (721)
                           ..+|..+.........    .....+..+...+||.+++..+ +..|-+|+......                  
T Consensus       171 -----l~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~  245 (423)
T KOG0313|consen  171 -----LRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREK  245 (423)
T ss_pred             -----EEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhh
Confidence                 3444444322211111    1222334567789998888775 77888888321110                  


Q ss_pred             -----EE---Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC
Q 004971          452 -----RQ---VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD  521 (721)
Q Consensus       452 -----~~---l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD  521 (721)
                           ..   |.  .+.+.++.|++ ...++.++       -+..++.|++.+.+     ....++... ......++|.
T Consensus       246 ~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~S-------wDHTIk~WDletg~-----~~~~~~~~k-sl~~i~~~~~  311 (423)
T KOG0313|consen  246 EGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVS-------WDHTIKVWDLETGG-----LKSTLTTNK-SLNCISYSPL  311 (423)
T ss_pred             cccccCceEEecccccceeeEEEcC-CCceEeec-------ccceEEEEEeeccc-----ceeeeecCc-ceeEeecccc
Confidence                 00   11  24567889988 33444443       57899999999876     444444433 5667889999


Q ss_pred             CCEEEEEEeeCCceeEEEEECCCCcccce-EECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE
Q 004971          522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGL-HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK  600 (721)
Q Consensus       522 g~~l~~~s~~~g~~~l~~~d~~~g~~~~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~  600 (721)
                      .+.|+..+.   +..|.+||+.++.-..+ ..+..+...+..+.|+|-..++++.....      ..+.+||+.+.+.-.
T Consensus       312 ~~Ll~~gss---dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D------~t~klWDvRS~k~pl  382 (423)
T KOG0313|consen  312 SKLLASGSS---DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD------NTVKLWDVRSTKAPL  382 (423)
T ss_pred             cceeeecCC---CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecC------CeEEEEEeccCCCcc
Confidence            999998887   88999999987753222 34556666788999999887666555432      389999997765222


Q ss_pred             eeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       601 l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      ....++...+-.+.|. +|..|+..+.+..
T Consensus       383 ydI~~h~DKvl~vdW~-~~~~IvSGGaD~~  411 (423)
T KOG0313|consen  383 YDIAGHNDKVLSVDWN-EGGLIVSGGADNK  411 (423)
T ss_pred             eeeccCCceEEEEecc-CCceEEeccCcce
Confidence            2223366777788887 6777777766654

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=98.85  E-value=4.2e-07  Score=95.49  Aligned_cols=238  Identities=13%  Similarity=0.139  Sum_probs=153.1

Q ss_pred             CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCC--CCEEEEEEeeCCCC
Q 004971          317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD--SSRVGYHKCRGGST  394 (721)
Q Consensus       317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~~  394 (721)
                      +....++.+++|| ||++|+...     --+.|+++++..-+  .+...+.|...+.++.+|.-  +..|+....++   
T Consensus       457 d~r~G~R~~~vSp-~gqhLAsGD-----r~GnlrVy~Lq~l~--~~~~~eAHesEilcLeyS~p~~~~kLLASasrd---  525 (1080)
T KOG1408|consen  457 DSRFGFRALAVSP-DGQHLASGD-----RGGNLRVYDLQELE--YTCFMEAHESEILCLEYSFPVLTNKLLASASRD---  525 (1080)
T ss_pred             CcccceEEEEECC-CcceecccC-----ccCceEEEEehhhh--hhhheecccceeEEEeecCchhhhHhhhhccCC---
Confidence            3455678899999 999998742     22349999998654  33444556666766666632  22222211111   


Q ss_pred             CCCCcceeEEEeccCCC---CcceecccCCCCceeCcCC--CEEEEEeCCcEEEEECCC--CceEE-------EeecCce
Q 004971          395 REDGNNQLLLENIKSPL---PDISLFRFDGSFPSFSPKG--DRIAFVEFPGVYVVNSDG--SNRRQ-------VYFKNAF  460 (721)
Q Consensus       395 ~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~SpDG--~~la~~~~~~l~v~d~~~--g~~~~-------l~~~~~~  460 (721)
                           .-|.+.+....-   ..+.........+.|.-.|  .+++..+......++...  +..+.       +...-..
T Consensus       526 -----RlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlY  600 (1080)
T KOG1408|consen  526 -----RLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLY  600 (1080)
T ss_pred             -----ceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEE
Confidence                 124444443321   1122122223345555555  444444433333333322  11111       1144567


Q ss_pred             eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC---CCCCcceEEccCCCEEEEEEeeCCceeE
Q 004971          461 STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN---GKNNAFPSVSPDGKWIVFRSTRTGYKNL  537 (721)
Q Consensus       461 ~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~SpDg~~l~~~s~~~g~~~l  537 (721)
                      +++..|..++++.++       .+.+++||.+....     ..+.+...   ++....+...|.|-||+....   +..|
T Consensus       601 Dm~Vdp~~k~v~t~c-------QDrnirif~i~sgK-----q~k~FKgs~~~eG~lIKv~lDPSgiY~atScs---dktl  665 (1080)
T KOG1408|consen  601 DMAVDPTSKLVVTVC-------QDRNIRIFDIESGK-----QVKSFKGSRDHEGDLIKVILDPSGIYLATSCS---DKTL  665 (1080)
T ss_pred             EeeeCCCcceEEEEe-------cccceEEEeccccc-----eeeeecccccCCCceEEEEECCCccEEEEeec---CCce
Confidence            899999999999987       57899999987653     33333322   244455788999999999887   7899


Q ss_pred             EEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971          538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN  594 (721)
Q Consensus       538 ~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~  594 (721)
                      .++|..+|+.  +.+++.+...++.+.|++|-++|+..+.++       .||+|.+.
T Consensus       666 ~~~Df~sgEc--vA~m~GHsE~VTG~kF~nDCkHlISvsgDg-------CIFvW~lp  713 (1080)
T KOG1408|consen  666 CFVDFVSGEC--VAQMTGHSEAVTGVKFLNDCKHLISVSGDG-------CIFVWKLP  713 (1080)
T ss_pred             EEEEeccchh--hhhhcCcchheeeeeecccchhheeecCCc-------eEEEEECc
Confidence            9999999997  888888888889999999999999988875       89999874

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=8.3e-08  Score=95.23  Aligned_cols=186  Identities=14%  Similarity=0.078  Sum_probs=128.6

Q ss_pred             CceeCcCCCEEEEE-eCCcEEEEECCCCc-eEEE-e-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971          423 FPSFSPKGDRIAFV-EFPGVYVVNSDGSN-RRQV-Y-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD  498 (721)
Q Consensus       423 ~~~~SpDG~~la~~-~~~~l~v~d~~~g~-~~~l-~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~  498 (721)
                      .++++.||+.|+.. .++.+++|+...-. .... . ...+.++.|||||+.|++.+       .+ ..+||..+...  
T Consensus       149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig-------~d-~~~VW~~~~g~--  218 (398)
T KOG0771|consen  149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIG-------AD-SARVWSVNTGA--  218 (398)
T ss_pred             EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEec-------CC-ceEEEEeccCc--
Confidence            36899999999988 48889999944322 1111 1 56788999999999999986       23 88999988753  


Q ss_pred             CccceEEcccCC--CCCcceEEccCC---CEEEEEEeeC-Cc---eeEEEEECCCCcccceEECcCCCcCceeeEEccCC
Q 004971          499 GVSAVRRLTTNG--KNNAFPSVSPDG---KWIVFRSTRT-GY---KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG  569 (721)
Q Consensus       499 ~~~~~~~l~~~~--~~~~~~~~SpDg---~~l~~~s~~~-g~---~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG  569 (721)
                         .+...+..+  .....+.|+-|+   ...+++.... +.   .++.+|+-.  ..-+.++.......+..++.|+||
T Consensus       219 ---~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~--~~l~~~~~~~~~~siSsl~VS~dG  293 (398)
T KOG0771|consen  219 ---ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS--NFLRLRKKIKRFKSISSLAVSDDG  293 (398)
T ss_pred             ---hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc--cccchhhhhhccCcceeEEEcCCC
Confidence               444555322  455668899887   3333333222 11   233344332  111133333334456899999999


Q ss_pred             CEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       570 ~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      +.++.+..++       .|-+++..+-+...+.+..|...+..+.|+||.++++-.+.+..
T Consensus       294 kf~AlGT~dG-------sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~  347 (398)
T KOG0771|consen  294 KFLALGTMDG-------SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE  347 (398)
T ss_pred             cEEEEeccCC-------cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc
Confidence            9999999976       78999988777777776668888999999999999988776654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=98.84  E-value=1.9e-06  Score=78.23  Aligned_cols=216  Identities=14%  Similarity=0.101  Sum_probs=140.1

Q ss_pred             CceeCcCCCEEEEEe-CCcEEEEECCCCc------eEEEe--ecCceeeEEcCC---CCeEEEEecCCCCCCCCCcEEEE
Q 004971          423 FPSFSPKGDRIAFVE-FPGVYVVNSDGSN------RRQVY--FKNAFSTVWDPV---REAVVYTSGGPEFASESSEVDII  490 (721)
Q Consensus       423 ~~~~SpDG~~la~~~-~~~l~v~d~~~g~------~~~l~--~~~~~~~~~spd---g~~la~~~~~~~~~~~~~~~~i~  490 (721)
                      ..+|||+|+.|+..+ +..|.++......      ...+.  ++.+..++|-.|   |..|+...       ..+...||
T Consensus        94 c~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~-------gagdc~iy  166 (350)
T KOG0641|consen   94 CTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA-------GAGDCKIY  166 (350)
T ss_pred             EEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec-------CCCcceEE
Confidence            469999999888874 5667666554221      12222  566777777533   33333332       34667777


Q ss_pred             EEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC-------CcCceee
Q 004971          491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-------PWSDTMC  563 (721)
Q Consensus       491 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~-------~~~~~~~  563 (721)
                      ..+-..+   .....+..+.+.+.. -++=+|-.++..+.   +..|..||+.-...  +..+...       ...+..+
T Consensus       167 ~tdc~~g---~~~~a~sghtghila-lyswn~~m~~sgsq---dktirfwdlrv~~~--v~~l~~~~~~~glessavaav  237 (350)
T KOG0641|consen  167 ITDCGRG---QGFHALSGHTGHILA-LYSWNGAMFASGSQ---DKTIRFWDLRVNSC--VNTLDNDFHDGGLESSAVAAV  237 (350)
T ss_pred             EeecCCC---CcceeecCCcccEEE-EEEecCcEEEccCC---CceEEEEeeeccce--eeeccCcccCCCcccceeEEE
Confidence            7776554   244566666543333 23334666666655   77899999875543  4444321       1346778


Q ss_pred             EEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCC
Q 004971          564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQ  643 (721)
Q Consensus       564 ~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~  643 (721)
                      +..|.|+.|+.+..+.       ...+||+.+++..+-... +...+..+.|||...|++..+.+..             
T Consensus       238 ~vdpsgrll~sg~~ds-------sc~lydirg~r~iq~f~p-hsadir~vrfsp~a~yllt~syd~~-------------  296 (350)
T KOG0641|consen  238 AVDPSGRLLASGHADS-------SCMLYDIRGGRMIQRFHP-HSADIRCVRFSPGAHYLLTCSYDMK-------------  296 (350)
T ss_pred             EECCCcceeeeccCCC-------ceEEEEeeCCceeeeeCC-CccceeEEEeCCCceEEEEecccce-------------
Confidence            9999999988877764       788899999988776654 7788899999999898888887763             


Q ss_pred             CCccEEEEEcCCCCeEEec-----cCCCCCCCceecCCcCC
Q 004971          644 PYGEIFKIKLDGSDLKRLT-----QNSFEDGTPAWGPRFIR  679 (721)
Q Consensus       644 ~~~~l~~~d~~~~~~~~lt-----~~~~~~~~~~~sp~~l~  679 (721)
                          |.+-|++|.-.++|.     .|..-.....|.|.-+.
T Consensus       297 ----ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~s  333 (350)
T KOG0641|consen  297 ----IKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFS  333 (350)
T ss_pred             ----EEEeecccchhhcCceEEEEeccCceEEEEecCccce
Confidence                778888876444433     33333455778885333

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=98.80  E-value=1.9e-06  Score=81.59  Aligned_cols=273  Identities=12%  Similarity=0.090  Sum_probs=157.8

Q ss_pred             CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEE----e-------e--cccCCCCcccCcEEcCCCCE
Q 004971          317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIE----L-------T--RFVSPKTHHLNPFISPDSSR  383 (721)
Q Consensus       317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~----l-------~--~~~~~~~~~~~~~~Spdg~~  383 (721)
                      .++..+..+.+.++.|++++.     |+.++.|.+||++.....+    +       .  ....|...+....|-|=..-
T Consensus        41 ~HgGsvNsL~id~tegrymlS-----Ggadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG  115 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLS-----GGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG  115 (397)
T ss_pred             cCCCccceeeeccccceEEee-----cCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence            455566777777756777665     5677789999997543110    0       0  01122333455566664444


Q ss_pred             EEEEEeeCCCCCCCCcceeEEEeccCCCCcce-ecccCCCCceeCcCCC--EEEEE--eCCcEEEEECCCCceEEEe---
Q 004971          384 VGYHKCRGGSTREDGNNQLLLENIKSPLPDIS-LFRFDGSFPSFSPKGD--RIAFV--EFPGVYVVNSDGSNRRQVY---  455 (721)
Q Consensus       384 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~SpDG~--~la~~--~~~~l~v~d~~~g~~~~l~---  455 (721)
                      ++..+.-+        -.+-+++..+-..... .....+...+|||=..  .|+.+  .+.+|.+.|+.+|....+.   
T Consensus       116 mFtssSFD--------htlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH  187 (397)
T KOG4283|consen  116 MFTSSSFD--------HTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH  187 (397)
T ss_pred             eeeccccc--------ceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccc
Confidence            43322211        1233444333211111 1122233456776442  33333  4778999999999876655   


Q ss_pred             ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc--------------cCCCCCcceEEccC
Q 004971          456 FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT--------------TNGKNNAFPSVSPD  521 (721)
Q Consensus       456 ~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~--------------~~~~~~~~~~~SpD  521 (721)
                      .+.+..+.|||...+++++.      ..++.+++|++....+    ..+.+.              .+.+.+..++|+.|
T Consensus       188 r~~vlaV~Wsp~~e~vLatg------saDg~irlWDiRrasg----cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd  257 (397)
T KOG4283|consen  188 RDGVLAVEWSPSSEWVLATG------SADGAIRLWDIRRASG----CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD  257 (397)
T ss_pred             cCceEEEEeccCceeEEEec------CCCceEEEEEeecccc----eeEEeecccCccCccccccccccceeeeeeeccc
Confidence            56788999999999999886      4689999999987643    333222              22245677899999


Q ss_pred             CCEEEEEEeeCCceeEEEEECCCCcccce--EECcCCC--cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971          522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGL--HRLTEGP--WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG  597 (721)
Q Consensus       522 g~~l~~~s~~~g~~~l~~~d~~~g~~~~~--~~l~~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~  597 (721)
                      |++++....   +.++.+|+..+|+....  .++..+.  ....... +.+...+++.-.+.       .++++++-.+.
T Consensus       258 ~~~l~~~gt---d~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~-------~lall~~~sgs  326 (397)
T KOG4283|consen  258 ARYLASCGT---DDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDG-------SLALLNLLEGS  326 (397)
T ss_pred             chhhhhccC---ccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCC-------eEEEEEccCce
Confidence            999998776   77899999988863111  1111111  0001122 44544444444433       78888887776


Q ss_pred             eEEeeecCCCCCcCCeEECCCCCEEEE
Q 004971          598 LRKLIQSGSAGRANHPYFSPDGKSIVF  624 (721)
Q Consensus       598 ~~~l~~~~~~~~~~~~~~SpDG~~l~~  624 (721)
                      ..++... +...+...++.||-+..+.
T Consensus       327 ~ir~l~~-h~k~i~c~~~~~~fq~~~t  352 (397)
T KOG4283|consen  327 FVRRLST-HLKRINCAAYRPDFEQCFT  352 (397)
T ss_pred             EEEeeec-ccceeeEEeecCchhhhhc
Confidence            5555443 4444555566666555443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.79  E-value=8.8e-07  Score=88.13  Aligned_cols=209  Identities=19%  Similarity=0.304  Sum_probs=129.5

Q ss_pred             CceeCcCCCEEEEEe--CCcEEEEECCCCceEEEeecCceeeEEc-CCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971          423 FPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVYFKNAFSTVWD-PVREAVVYTSGGPEFASESSEVDIISINVDDVDG  499 (721)
Q Consensus       423 ~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~~~~~~~~~~s-pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~  499 (721)
                      .+.|.+....|+++.  .+.|+.++..+++...+.......+.+. ++ ..|+++..        ....++  +..++  
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~-g~l~v~~~--------~~~~~~--d~~~g--   70 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPD-GRLYVADS--------GGIAVV--DPDTG--   70 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTT-SEEEEEET--------TCEEEE--ETTTT--
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccC-CEEEEEEc--------CceEEE--ecCCC--
Confidence            478888666788884  7889999999988776663446677777 56 55555542        333333  54443  


Q ss_pred             ccceEEcccC------CCCCcceEEccCCCEEEEEEeeCC----c--eeEEEEECCCCcccceEECcCCCcCceeeEEcc
Q 004971          500 VSAVRRLTTN------GKNNAFPSVSPDGKWIVFRSTRTG----Y--KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP  567 (721)
Q Consensus       500 ~~~~~~l~~~------~~~~~~~~~SpDg~~l~~~s~~~g----~--~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~Sp  567 (721)
                        +.+.+...      ......+++.|||+ |++......    .  ..||+++.+ ++   +..+...-...+.++|+|
T Consensus        71 --~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~---~~~~~~~~~~pNGi~~s~  143 (246)
T PF08450_consen   71 --KVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK---VTVVADGLGFPNGIAFSP  143 (246)
T ss_dssp             --EEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE---EEEEEEEESSEEEEEEET
T ss_pred             --cEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce---EEEEecCcccccceEECC
Confidence              33333322      13455689999999 666654321    1  679999998 66   444444434457899999


Q ss_pred             CCCEEEEEEccCCCCCCceeEEEEecCCCc--e--EEeeecCCC--CCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCC
Q 004971          568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTG--L--RKLIQSGSA--GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQ  641 (721)
Q Consensus       568 DG~~l~~~~~~~~~~~~~~~i~~~d~~~~~--~--~~l~~~~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~  641 (721)
                      ||+.|+++....      ..|+.++++...  .  +++......  +....+++..+|+ |+++....+           
T Consensus       144 dg~~lyv~ds~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~-----------  205 (246)
T PF08450_consen  144 DGKTLYVADSFN------GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGG-----------  205 (246)
T ss_dssp             TSSEEEEEETTT------TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTT-----------
T ss_pred             cchheeeccccc------ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCC-----------
Confidence            999998877653      379999885322  1  222211122  2356789999997 444444332           


Q ss_pred             CCCCccEEEEEcCCCCeEEeccCCCCCCCceec
Q 004971          642 YQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWG  674 (721)
Q Consensus       642 ~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~s  674 (721)
                           .|++++.+|.....+.-......+++|.
T Consensus       206 -----~I~~~~p~G~~~~~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  206 -----RIVVFDPDGKLLREIELPVPRPTNCAFG  233 (246)
T ss_dssp             -----EEEEEETTSCEEEEEE-SSSSEEEEEEE
T ss_pred             -----EEEEECCCccEEEEEcCCCCCEEEEEEE
Confidence                 5999999966556666543455667773

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=98.79  E-value=1.8e-07  Score=90.55  Aligned_cols=239  Identities=13%  Similarity=0.078  Sum_probs=174.2

Q ss_pred             cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee--cccCCCCceeCcCCCEEEEEe-CCcEE
Q 004971          366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL--FRFDGSFPSFSPKGDRIAFVE-FPGVY  442 (721)
Q Consensus       366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~SpDG~~la~~~-~~~l~  442 (721)
                      .+|.+.+.++++.|-..+++..+.+..         +-++|+.++...+++  .....+.+++|+---+|..++ +..+.
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs~Drt---------ikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGSADRT---------IKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecCCCce---------eEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence            345667778888888887776655554         556677776443333  233456788998777777764 78899


Q ss_pred             EEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEc
Q 004971          443 VVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVS  519 (721)
Q Consensus       443 v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S  519 (721)
                      -||+...+..+-.   -..+..++..|.-+.|+..+       .+..++||++....     .+..+..+...+..+.+.
T Consensus       219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~g-------rDst~RvWDiRtr~-----~V~~l~GH~~~V~~V~~~  286 (460)
T KOG0285|consen  219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGG-------RDSTIRVWDIRTRA-----SVHVLSGHTNPVASVMCQ  286 (460)
T ss_pred             EEechhhhhHHHhccccceeEEEeccccceeEEecC-------CcceEEEeeecccc-----eEEEecCCCCcceeEEee
Confidence            9999877644333   34567788888888888775       57899999998865     677888888888888888


Q ss_pred             cCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971          520 PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR  599 (721)
Q Consensus       520 pDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~  599 (721)
                      |-.-+++..+.   +..|.+||+..|+.  +..++.+.-.+..++..|+...++.++.+        .|..|++..|+..
T Consensus       287 ~~dpqvit~S~---D~tvrlWDl~agkt--~~tlt~hkksvral~lhP~e~~fASas~d--------nik~w~~p~g~f~  353 (460)
T KOG0285|consen  287 PTDPQVITGSH---DSTVRLWDLRAGKT--MITLTHHKKSVRALCLHPKENLFASASPD--------NIKQWKLPEGEFL  353 (460)
T ss_pred             cCCCceEEecC---CceEEEeeeccCce--eEeeecccceeeEEecCCchhhhhccCCc--------cceeccCCccchh
Confidence            87778888887   78999999998886  77888888878889999987766666555        6899998877644


Q ss_pred             EeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971          600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       600 ~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  657 (721)
                      .-. .++...+..++...||-  +++..+++                .|+.||-.+|.
T Consensus       354 ~nl-sgh~~iintl~~nsD~v--~~~G~dng----------------~~~fwdwksg~  392 (460)
T KOG0285|consen  354 QNL-SGHNAIINTLSVNSDGV--LVSGGDNG----------------SIMFWDWKSGH  392 (460)
T ss_pred             hcc-ccccceeeeeeeccCce--EEEcCCce----------------EEEEEecCcCc
Confidence            332 23555666676666654  44555554                38888887763

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=4.7e-07  Score=83.46  Aligned_cols=223  Identities=12%  Similarity=0.075  Sum_probs=140.2

Q ss_pred             CCEEEEEEeeCCCCCCCCcceeEEEeccCCCC---cceecccCCCCceeCc--CCCEEEEEe-CCcEEEEECCCCceEEE
Q 004971          381 SSRVGYHKCRGGSTREDGNNQLLLENIKSPLP---DISLFRFDGSFPSFSP--KGDRIAFVE-FPGVYVVNSDGSNRRQV  454 (721)
Q Consensus       381 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~Sp--DG~~la~~~-~~~l~v~d~~~g~~~~l  454 (721)
                      |++|+.++.+..       .+|+-..-.++..   .++........++|..  -|..||..+ ++.+.+|.-.+|.-.++
T Consensus        23 gkrlATcsSD~t-------VkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~   95 (299)
T KOG1332|consen   23 GKRLATCSSDGT-------VKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA   95 (299)
T ss_pred             cceeeeecCCcc-------EEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhh
Confidence            788888777666       3333332222211   1111122223345543  588888885 88999999988865444


Q ss_pred             e-----ecCceeeEEcCCCC--eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC---C--
Q 004971          455 Y-----FKNAFSTVWDPVRE--AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD---G--  522 (721)
Q Consensus       455 ~-----~~~~~~~~~spdg~--~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD---g--  522 (721)
                      .     ...+..++|.|.+-  .|+..+       .++++.|..++.++.  ....+....+.-.+..+.|.|-   |  
T Consensus        96 ~e~~~h~~SVNsV~wapheygl~Lacas-------SDG~vsvl~~~~~g~--w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   96 YEHAAHSASVNSVAWAPHEYGLLLACAS-------SDGKVSVLTYDSSGG--WTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             hhhhhhcccceeecccccccceEEEEee-------CCCcEEEEEEcCCCC--ccchhhhhccccccceeeecCcCCCccc
Confidence            3     56778889988754  444444       689999999988742  1222333445566777888886   5  


Q ss_pred             ---------CEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCC----CEEEEEEccCCCCCCceeEE
Q 004971          523 ---------KWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG----EWIAFASDRDNPGSGSFEMY  589 (721)
Q Consensus       523 ---------~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG----~~l~~~~~~~~~~~~~~~i~  589 (721)
                               ++|+....   +..+.+|+.+.++-.....|..+...+..++|.|.-    ..|+.++.++       ++.
T Consensus       167 ~~~~~~~~~krlvSgGc---Dn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg-------~vi  236 (299)
T KOG1332|consen  167 VDQGPAAKVKRLVSGGC---DNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG-------TVI  236 (299)
T ss_pred             cccCcccccceeeccCC---ccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC-------cEE
Confidence                     55665554   667778887776433234466777778889999974    3667666663       566


Q ss_pred             EEecC--CCce-EEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          590 LIHPN--GTGL-RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       590 ~~d~~--~~~~-~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      +|..+  .++- .++... .......+.||+.|..|++...++.
T Consensus       237 Iwt~~~e~e~wk~tll~~-f~~~~w~vSWS~sGn~LaVs~GdNk  279 (299)
T KOG1332|consen  237 IWTKDEEYEPWKKTLLEE-FPDVVWRVSWSLSGNILAVSGGDNK  279 (299)
T ss_pred             EEEecCccCccccccccc-CCcceEEEEEeccccEEEEecCCcE
Confidence            65543  2221 122222 3455788999999999998877764

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.76  E-value=5.3e-06  Score=98.35  Aligned_cols=199  Identities=14%  Similarity=0.182  Sum_probs=121.5

Q ss_pred             CCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEee-------------------cCceeeEEcCCCCeEEEEecCCCC
Q 004971          422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVYF-------------------KNAFSTVWDPVREAVVYTSGGPEF  480 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~~-------------------~~~~~~~~spdg~~la~~~~~~~~  480 (721)
                      ..+++++++..|+++.  ...|.++|+.++..+.+..                   .....++++|++..++++..    
T Consensus       627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~----  702 (1057)
T PLN02919        627 QGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA----  702 (1057)
T ss_pred             cEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC----
Confidence            4468888888777773  5678999988877665531                   12346889998778877642    


Q ss_pred             CCCCCcEEEEEEEccCCCCccceEEcccC---------------CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCC
Q 004971          481 ASESSEVDIISINVDDVDGVSAVRRLTTN---------------GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG  545 (721)
Q Consensus       481 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~---------------~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g  545 (721)
                        .+..+  +.++...+    ....+...               -.....++++|||++|+++...  +.+|++||++++
T Consensus       703 --~~~~I--~v~d~~~g----~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~--n~~Irv~D~~tg  772 (1057)
T PLN02919        703 --GQHQI--WEYNISDG----VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE--SSSIRALDLKTG  772 (1057)
T ss_pred             --CCCeE--EEEECCCC----eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--CCeEEEEECCCC
Confidence              23344  44443322    11111110               0234568999999998887653  568999999876


Q ss_pred             cccceE-----------ECcCC--------CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC
Q 004971          546 EGYGLH-----------RLTEG--------PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS  606 (721)
Q Consensus       546 ~~~~~~-----------~l~~~--------~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~  606 (721)
                      ....+.           .+...        -.....+++++||+ |+++....      ..|.+||.+++....+...+.
T Consensus       773 ~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N------~rIrviD~~tg~v~tiaG~G~  845 (1057)
T PLN02919        773 GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYN------HKIKKLDPATKRVTTLAGTGK  845 (1057)
T ss_pred             cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCC------CEEEEEECCCCeEEEEeccCC
Confidence            521110           00000        00124678999997 55554332      389999998887665543211


Q ss_pred             C------------CCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe
Q 004971          607 A------------GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL  658 (721)
Q Consensus       607 ~------------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  658 (721)
                      .            .....+++++||+ |+++...++                .|.+||+++++.
T Consensus       846 ~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn----------------~Irvid~~~~~~  892 (1057)
T PLN02919        846 AGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNS----------------LIRYLDLNKGEA  892 (1057)
T ss_pred             cCCCCCcccccccCCceEEEEeCCCC-EEEEECCCC----------------EEEEEECCCCcc
Confidence            0            1345679999997 444444332                499999988865

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=5.1e-08  Score=108.02  Aligned_cols=247  Identities=12%  Similarity=0.083  Sum_probs=165.8

Q ss_pred             CcccCceeecCCCCE---EEEEEecCCCCeeeEEEEECCC----CceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971          320 LHAFTPATSPGNNKF---IAVATRRPTSSYRHIELFDLVK----NKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG  392 (721)
Q Consensus       320 ~~~~~~~~sp~dG~~---la~~~~~~g~~~~~l~l~dl~t----g~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~  392 (721)
                      .....++|++ .|..   |+.    .|.+++.|.+||...    ++...+.....|.+.+..+.|++.+.-++.... +.
T Consensus        65 ~rF~kL~W~~-~g~~~~GlIa----GG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa-~~  138 (1049)
T KOG0307|consen   65 NRFNKLAWGS-YGSHSHGLIA----GGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGA-DD  138 (1049)
T ss_pred             ccceeeeecc-cCCCccceee----ccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccC-CC
Confidence            3456788988 8876   222    245667799999865    233345556677888999999999885444332 22


Q ss_pred             CCCCCCcceeEEEeccCCCCccee----cccCCCCceeCcCCCEEEEE-e-CCcEEEEECCCCce-EEEe----ecCcee
Q 004971          393 STREDGNNQLLLENIKSPLPDISL----FRFDGSFPSFSPKGDRIAFV-E-FPGVYVVNSDGSNR-RQVY----FKNAFS  461 (721)
Q Consensus       393 ~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~SpDG~~la~~-~-~~~l~v~d~~~g~~-~~l~----~~~~~~  461 (721)
                             .+|+++|+.......+.    ...++..++|...-++|... + .+...+||+...++ ..+.    ......
T Consensus       139 -------geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~  211 (1049)
T KOG0307|consen  139 -------GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV  211 (1049)
T ss_pred             -------CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceee
Confidence                   45899998765444333    22334456776544444333 3 56899999987643 2232    123568


Q ss_pred             eEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEE
Q 004971          462 TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD  541 (721)
Q Consensus       462 ~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d  541 (721)
                      +.|.||...-+++..+.   .....+.+|++.....    ..+.++.|...+..+.|.+.+..++..+.+  +.+|++|+
T Consensus       212 l~WhP~~aTql~~As~d---d~~PviqlWDlR~ass----P~k~~~~H~~GilslsWc~~D~~lllSsgk--D~~ii~wN  282 (1049)
T KOG0307|consen  212 LAWHPDHATQLLVASGD---DSAPVIQLWDLRFASS----PLKILEGHQRGILSLSWCPQDPRLLLSSGK--DNRIICWN  282 (1049)
T ss_pred             eeeCCCCceeeeeecCC---CCCceeEeecccccCC----chhhhcccccceeeeccCCCCchhhhcccC--CCCeeEec
Confidence            99999987655554321   2456788999887664    677788888888999999988777777665  67899999


Q ss_pred             CCCCcccceEECcCCCcCceeeEEccCCC-EEEEEEccCCCCCCceeEEEEecCCCc
Q 004971          542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGE-WIAFASDRDNPGSGSFEMYLIHPNGTG  597 (721)
Q Consensus       542 ~~~g~~~~~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~i~~~d~~~~~  597 (721)
                      .++|+.  +..+.........+.|.|-.- .++.++.++       .|-+|.+.+..
T Consensus       283 ~~tgEv--l~~~p~~~nW~fdv~w~pr~P~~~A~asfdg-------kI~I~sl~~~~  330 (1049)
T KOG0307|consen  283 PNTGEV--LGELPAQGNWCFDVQWCPRNPSVMAAASFDG-------KISIYSLQGTD  330 (1049)
T ss_pred             CCCceE--eeecCCCCcceeeeeecCCCcchhhhheecc-------ceeeeeeecCC
Confidence            999986  777776555568899999765 666666664       56666665543

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.74  E-value=2.4e-06  Score=94.30  Aligned_cols=165  Identities=10%  Similarity=0.030  Sum_probs=105.4

Q ss_pred             CcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe------------
Q 004971          370 THHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE------------  437 (721)
Q Consensus       370 ~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~------------  437 (721)
                      ..+..+++||||+.++|........ ......||+.+..+....++... ....+.|||||++|+|+.            
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~-~d~~s~Lwv~~~gg~~~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGA-PDPASSLWVGPLGGVAVQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCC-CCcceEEEEEeCCCcceeeecCC-CCCCceECCCCCceEEEecCcceEEEeccC
Confidence            3567899999999999987533311 11236789888654444443222 356799999999888873            


Q ss_pred             -CCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC--ccceEEcccCCC-CC
Q 004971          438 -FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG--VSAVRRLTTNGK-NN  513 (721)
Q Consensus       438 -~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~l~~~~~-~~  513 (721)
                       .+++++.++++++...-..+.+..+.|||||++|+|...        +++.+-.+.....+.  ....+.+..... ..
T Consensus       428 ~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~--------g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~  499 (591)
T PRK13616        428 ATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIG--------GKVYLAVVEQTEDGQYALTNPREVGPGLGDTA  499 (591)
T ss_pred             CCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEEC--------CEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence             235677777776655422567999999999999999872        455554444332200  011122333222 24


Q ss_pred             cceEEccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971          514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE  546 (721)
Q Consensus       514 ~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~  546 (721)
                      ..+.|..|++ |++... .++..+|.+++++..
T Consensus       500 ~~l~W~~~~~-L~V~~~-~~~~~v~~v~vDG~~  530 (591)
T PRK13616        500 VSLDWRTGDS-LVVGRS-DPEHPVWYVNLDGSN  530 (591)
T ss_pred             ccceEecCCE-EEEEec-CCCCceEEEecCCcc
Confidence            6789999998 554433 456679999998655

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.74  E-value=6.7e-06  Score=80.94  Aligned_cols=227  Identities=14%  Similarity=0.082  Sum_probs=138.7

Q ss_pred             ccccCC-CCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEec-cCC----cceeccCCeEEEEeccCC---CC
Q 004971          220 SPAVSP-SGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVE-NGG----WPCWVDESTLFFHRKSEE---DD  290 (721)
Q Consensus       220 ~p~~SP-DG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~-~~~----~~~ws~dg~l~~~~~~~~---~g  290 (721)
                      ..+.+| ++..++|+. +.+          .-++++|..+|+..+.... .+.    +-.||+||+++|+..++.   .|
T Consensus         9 ~~a~~p~~~~avafaR-RPG----------~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G   77 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFAR-RPG----------TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRG   77 (305)
T ss_pred             ceeeCCCCCeEEEEEe-CCC----------cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcE
Confidence            346788 556666754 444          5788999999997765533 332    559999999877654432   45


Q ss_pred             cEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEec------CC-------CCeeeEEEEECCCC
Q 004971          291 WISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRR------PT-------SSYRHIELFDLVKN  357 (721)
Q Consensus       291 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~------~g-------~~~~~l~l~dl~tg  357 (721)
                      .+-||++.  .+.      .+...+..++...+.+.+.| ||+.|+++.-.      .|       .-...|..+|..+|
T Consensus        78 ~IgVyd~~--~~~------~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG  148 (305)
T PF07433_consen   78 VIGVYDAA--RGY------RRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG  148 (305)
T ss_pred             EEEEEECc--CCc------EEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence            66778554  221      25556667788888999999 99999886410      01       12345778888999


Q ss_pred             ceEEeecc--cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce-------ecccCCCCceeCc
Q 004971          358 KFIELTRF--VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS-------LFRFDGSFPSFSP  428 (721)
Q Consensus       358 ~~~~l~~~--~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~Sp  428 (721)
                      +...-..+  ..+...+..+++.+||..++-....+...  ....-+.+.........+.       .+..-...+++++
T Consensus       149 ~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~--~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~  226 (305)
T PF07433_consen  149 ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPG--DAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADR  226 (305)
T ss_pred             ceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCC--ccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeC
Confidence            85443333  33456788999999997665544444321  1112222332222111111       1111123578999


Q ss_pred             CCCEEEEEe--CCcEEEEECCCCceEEEe-ecCceeeEEcCCC
Q 004971          429 KGDRIAFVE--FPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVR  468 (721)
Q Consensus       429 DG~~la~~~--~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg  468 (721)
                      +|..++..+  .+.+.+||..+++..... -..+-.++..+++
T Consensus       227 ~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~  269 (305)
T PF07433_consen  227 DGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG  269 (305)
T ss_pred             CCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc
Confidence            999998884  678999999999865544 2233344444555

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.74  E-value=9e-06  Score=77.50  Aligned_cols=271  Identities=10%  Similarity=0.058  Sum_probs=158.9

Q ss_pred             CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCC-CceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCC
Q 004971          319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVK-NKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRED  397 (721)
Q Consensus       319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~t-g~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~  397 (721)
                      .-.+..++||| --+.++.+    ++-+..+++|+++. |.... .....+.+.+....||.||..++....++.     
T Consensus        27 ~DsIS~l~FSP-~~~~~~~A----~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~-----   95 (347)
T KOG0647|consen   27 EDSISALAFSP-QADNLLAA----GSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ-----   95 (347)
T ss_pred             ccchheeEecc-ccCceEEe----cccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCc-----
Confidence            33567899999 66656543    33456699999976 33222 223345677889999999998888776665     


Q ss_pred             CcceeEEEeccCC-CCcceecccCCCCceeCcCCC--EEEEEe-CCcEEEEECCCCceE-EEe-ecCceeeEEcCCCCeE
Q 004971          398 GNNQLLLENIKSP-LPDISLFRFDGSFPSFSPKGD--RIAFVE-FPGVYVVNSDGSNRR-QVY-FKNAFSTVWDPVREAV  471 (721)
Q Consensus       398 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~SpDG~--~la~~~-~~~l~v~d~~~g~~~-~l~-~~~~~~~~~spdg~~l  471 (721)
                          +.++++.++ ...+...........|-+...  .|+..+ +..|..||.....+. .+. ++.+..+..-  -..+
T Consensus        96 ----~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~  169 (347)
T KOG0647|consen   96 ----AKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMA  169 (347)
T ss_pred             ----eEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--Ccee
Confidence                456666655 223344444455566654443  334444 788999998766542 222 3333322221  1223


Q ss_pred             EEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC-CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce
Q 004971          472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN-GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL  550 (721)
Q Consensus       472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~  550 (721)
                      ++..       .+..+.+|.+.-...    +.+++... ......++..+|.+..+..+-   ..++.+..++.+.++.-
T Consensus       170 vVat-------a~r~i~vynL~n~~t----e~k~~~SpLk~Q~R~va~f~d~~~~alGsi---EGrv~iq~id~~~~~~n  235 (347)
T KOG0647|consen  170 VVAT-------AERHIAVYNLENPPT----EFKRIESPLKWQTRCVACFQDKDGFALGSI---EGRVAIQYIDDPNPKDN  235 (347)
T ss_pred             EEEe-------cCCcEEEEEcCCCcc----hhhhhcCcccceeeEEEEEecCCceEeeee---cceEEEEecCCCCccCc
Confidence            3332       345666666543221    23333322 245666777788777776665   44555555544321100


Q ss_pred             EEC--------cCC-CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCE
Q 004971          551 HRL--------TEG-PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS  621 (721)
Q Consensus       551 ~~l--------~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~  621 (721)
                      -.+        ... -+.++.++|.|.=..|+....++       .+-.||-+... +..+...+...+..-.|+.+|+.
T Consensus       236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDG-------tf~FWDkdar~-kLk~s~~~~qpItcc~fn~~G~i  307 (347)
T KOG0647|consen  236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDG-------TFSFWDKDART-KLKTSETHPQPITCCSFNRNGSI  307 (347)
T ss_pred             eeEEEeccCCCCCCceEEecceEeecccceEEEecCCc-------eEEEecchhhh-hhhccCcCCCccceeEecCCCCE
Confidence            000        111 34567899999877888888875       77788866542 22222225667888899999999


Q ss_pred             EEEEEec
Q 004971          622 IVFTSDY  628 (721)
Q Consensus       622 l~~~~~~  628 (721)
                      ++|+...
T Consensus       308 faYA~gY  314 (347)
T KOG0647|consen  308 FAYALGY  314 (347)
T ss_pred             EEEEeec
Confidence            9887654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=98.74  E-value=1e-06  Score=88.89  Aligned_cols=174  Identities=11%  Similarity=0.129  Sum_probs=124.2

Q ss_pred             CceeCcCCCEEEEEe-CCcEEEEECCCCceE-EEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971          423 FPSFSPKGDRIAFVE-FPGVYVVNSDGSNRR-QVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV  497 (721)
Q Consensus       423 ~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~-~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~  497 (721)
                      .+.+.-...+||.++ .++|.+..+.++... .+.   ...+..+.|||-.+.++...      .+++.+.+|++.....
T Consensus       126 ~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~a------sd~G~VtlwDv~g~sp  199 (673)
T KOG4378|consen  126 YVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIA------SDKGAVTLWDVQGMSP  199 (673)
T ss_pred             EEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEee------ccCCeEEEEeccCCCc
Confidence            345555667888885 678999988877643 333   23456789999999998876      4689999999886552


Q ss_pred             CCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971          498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       498 ~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~  577 (721)
                          .......|......++|||-+..|++.-..  +.+|++||......  ...|+.. .....++|+++|.+|+.+..
T Consensus       200 ----~~~~~~~HsAP~~gicfspsne~l~vsVG~--Dkki~~yD~~s~~s--~~~l~y~-~Plstvaf~~~G~~L~aG~s  270 (673)
T KOG4378|consen  200 ----IFHASEAHSAPCRGICFSPSNEALLVSVGY--DKKINIYDIRSQAS--TDRLTYS-HPLSTVAFSECGTYLCAGNS  270 (673)
T ss_pred             ----ccchhhhccCCcCcceecCCccceEEEecc--cceEEEeecccccc--cceeeec-CCcceeeecCCceEEEeecC
Confidence                333344556677889999988877665433  67899999986553  4555532 23468999999999998888


Q ss_pred             cCCCCCCceeEEEEecCCCc-eEEeeecCCCCCcCCeEECCCC
Q 004971          578 RDNPGSGSFEMYLIHPNGTG-LRKLIQSGSAGRANHPYFSPDG  619 (721)
Q Consensus       578 ~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~~~SpDG  619 (721)
                      ++       .|+.||+.+.+ +..+.. .+...+..++|-|.-
T Consensus       271 ~G-------~~i~YD~R~~k~Pv~v~s-ah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  271 KG-------ELIAYDMRSTKAPVAVRS-AHDASVTRVAFQPSP  305 (673)
T ss_pred             Cc-------eEEEEecccCCCCceEee-ecccceeEEEeeecc
Confidence            76       89999997754 344433 266678888886653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=3.1e-07  Score=91.21  Aligned_cols=201  Identities=15%  Similarity=0.059  Sum_probs=126.7

Q ss_pred             cCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCce-
Q 004971          373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNR-  451 (721)
Q Consensus       373 ~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~-  451 (721)
                      ..+++++||..|+....++.       .+++-+.-............+...+.|||||+.|++++.....+|+.++|.. 
T Consensus       148 k~vaf~~~gs~latgg~dg~-------lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~  220 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGT-------LRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAAL  220 (398)
T ss_pred             eEEEEcCCCCEeeeccccce-------EEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchh
Confidence            45889999999988766665       4444432212222222334456779999999999999877999999998842 


Q ss_pred             EEEe----ecCceeeEEcCCC---CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCE
Q 004971          452 RQVY----FKNAFSTVWDPVR---EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKW  524 (721)
Q Consensus       452 ~~l~----~~~~~~~~~spdg---~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~  524 (721)
                      ...+    +.......|+.|+   ...+++..     ...+.+..+++...........++.......+..++.|+||++
T Consensus       221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~-----~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf  295 (398)
T KOG0771|consen  221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQ-----FPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF  295 (398)
T ss_pred             hhcCCcccchhhhhceecccCCCceEEEEEec-----CCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence            2222    2344567777776   33333332     1345566666655432111122333333346788999999999


Q ss_pred             EEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971          525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       525 l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      ++..+.   +..+-+++..+-+.  +..+. .|...++.+.|+||.++++-.+.+     ....|....++.
T Consensus       296 ~AlGT~---dGsVai~~~~~lq~--~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~-----~~~~v~~l~vd~  357 (398)
T KOG0771|consen  296 LALGTM---DGSVAIYDAKSLQR--LQYVKEAHLGFVTGLTFSPDSRYLASVSSD-----NEAAVTKLAVDK  357 (398)
T ss_pred             EEEecc---CCcEEEEEeceeee--eEeehhhheeeeeeEEEcCCcCcccccccC-----CceeEEEEeecc
Confidence            999988   67788888775442  22222 345578999999999999886665     334555555433

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.72  E-value=3.9e-07  Score=92.79  Aligned_cols=167  Identities=16%  Similarity=0.178  Sum_probs=120.2

Q ss_pred             CCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971          422 SFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD  498 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~  498 (721)
                      ....|+|||.-|..++ ++.|.+|.-.|--...+.  ...+...+|.|+...++|+.        .+.+.|-.+..+.  
T Consensus       108 ~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~--------g~h~~IKpL~~n~--  177 (737)
T KOG1524|consen  108 SSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ--------GGHISIKPLAANS--  177 (737)
T ss_pred             hhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec--------CCeEEEeeccccc--
Confidence            3458999999888885 788999986553222222  45788999999999999985        3555555555543  


Q ss_pred             CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971          499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~  578 (721)
                         ++.+...+++.+..+.|+|.+..|+...+   +.+..+||..+..   +-.-..+.+.+++++|.|| +.+++.+..
T Consensus       178 ---k~i~WkAHDGiiL~~~W~~~s~lI~sgGE---D~kfKvWD~~G~~---Lf~S~~~ey~ITSva~npd-~~~~v~S~n  247 (737)
T KOG1524|consen  178 ---KIIRWRAHDGLVLSLSWSTQSNIIASGGE---DFRFKIWDAQGAN---LFTSAAEEYAITSVAFNPE-KDYLLWSYN  247 (737)
T ss_pred             ---ceeEEeccCcEEEEeecCccccceeecCC---ceeEEeecccCcc---cccCChhccceeeeeeccc-cceeeeeee
Confidence               67778888889999999999998887776   7889999988544   4444456778899999999 444444433


Q ss_pred             CCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEec
Q 004971          579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY  628 (721)
Q Consensus       579 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~  628 (721)
                              .+.           +..+ ..+.+..++||+||..++.....
T Consensus       248 --------t~R-----------~~~p-~~GSifnlsWS~DGTQ~a~gt~~  277 (737)
T KOG1524|consen  248 --------TAR-----------FSSP-RVGSIFNLSWSADGTQATCGTST  277 (737)
T ss_pred             --------eee-----------ecCC-CccceEEEEEcCCCceeeccccC
Confidence                    222           2111 34567788999999988765543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.72  E-value=6.8e-07  Score=91.25  Aligned_cols=158  Identities=18%  Similarity=0.207  Sum_probs=100.4

Q ss_pred             CCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEeecCceeeEE--cCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          421 GSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFKNAFSTVW--DPVREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~~~~~~~~~~--spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      ...+.|-|.+..+..+  ..+.+|++|..      + ......+.|  -+++..+.+...              .-....
T Consensus       222 vT~ikWvpg~~~~Fl~a~~sGnlyly~~~------~-~~~~t~p~~~~~k~~~~f~i~t~--------------ksk~~r  280 (636)
T KOG2394|consen  222 VTCIKWVPGSDSLFLVAHASGNLYLYDKE------I-VCGATAPSYQALKDGDQFAILTS--------------KSKKTR  280 (636)
T ss_pred             eEEEEEEeCCCceEEEEEecCceEEeecc------c-cccCCCCcccccCCCCeeEEeee--------------eccccC
Confidence            3456777655544433  57888988762      1 122222222  345555544321              111111


Q ss_pred             CCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC-CcCceeeEEccCCCEEEEE
Q 004971          497 VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-PWSDTMCNWSPDGEWIAFA  575 (721)
Q Consensus       497 ~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~-~~~~~~~~~SpDG~~l~~~  575 (721)
                          ..+.++....+.+..++|||||++||.++.   +.-|.++|.++.+   +.-+... -+...-+.||||||+|+.+
T Consensus       281 ----NPv~~w~~~~g~in~f~FS~DG~~LA~VSq---DGfLRvF~fdt~e---Llg~mkSYFGGLLCvcWSPDGKyIvtG  350 (636)
T KOG2394|consen  281 ----NPVARWHIGEGSINEFAFSPDGKYLATVSQ---DGFLRIFDFDTQE---LLGVMKSYFGGLLCVCWSPDGKYIVTG  350 (636)
T ss_pred             ----CccceeEeccccccceeEcCCCceEEEEec---CceEEEeeccHHH---HHHHHHhhccceEEEEEcCCccEEEec
Confidence                134445555557788999999999999998   7889999988766   3333321 2234678999999999999


Q ss_pred             EccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC
Q 004971          576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP  617 (721)
Q Consensus       576 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp  617 (721)
                      ..++       -|-+|.+..+++..--. +|..++..++|.|
T Consensus       351 GEDD-------LVtVwSf~erRVVARGq-GHkSWVs~VaFDp  384 (636)
T KOG2394|consen  351 GEDD-------LVTVWSFEERRVVARGQ-GHKSWVSVVAFDP  384 (636)
T ss_pred             CCcc-------eEEEEEeccceEEEecc-ccccceeeEeecc
Confidence            9885       67888887765544433 3777888899986

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=1.1e-06  Score=90.81  Aligned_cols=188  Identities=14%  Similarity=0.116  Sum_probs=120.6

Q ss_pred             CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC--CcceecccCCCCceeCcCCCEEEEEeCCcEEEEE
Q 004971          368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL--PDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVN  445 (721)
Q Consensus       368 ~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d  445 (721)
                      +...+..+.|..+|.+|+.+...+..      ..+++.++.-..  ..+...........|+|---+++++....|.+||
T Consensus       520 ~~k~i~~vtWHrkGDYlatV~~~~~~------~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYd  593 (733)
T KOG0650|consen  520 HPKSIRQVTWHRKGDYLATVMPDSGN------KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYD  593 (733)
T ss_pred             cCCccceeeeecCCceEEEeccCCCc------ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEe
Confidence            35567789999999999987766553      356777664332  2222233344567899988889888999999999


Q ss_pred             CCCCce-EEE-e-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEE----
Q 004971          446 SDGSNR-RQV-Y-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV----  518 (721)
Q Consensus       446 ~~~g~~-~~l-~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----  518 (721)
                      +..++. +.+ + ...+..++.+|.|..|+..+       .++++-.+++++.+.    ..+.+..+...+..++|    
T Consensus       594 L~kqelvKkL~tg~kwiS~msihp~GDnli~gs-------~d~k~~WfDldlssk----Pyk~lr~H~~avr~Va~H~ry  662 (733)
T KOG0650|consen  594 LSKQELVKKLLTGSKWISSMSIHPNGDNLILGS-------YDKKMCWFDLDLSSK----PYKTLRLHEKAVRSVAFHKRY  662 (733)
T ss_pred             hhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec-------CCCeeEEEEcccCcc----hhHHhhhhhhhhhhhhhcccc
Confidence            987653 222 2 34678899999999999986       467777788888764    44555555444444444    


Q ss_pred             ------ccCCCEEEEEEeeCCceeEEEEEC-CCCcccceEECcCCC----cCceeeEEccCCCEEEEEEccC
Q 004971          519 ------SPDGKWIVFRSTRTGYKNLYIMDA-EGGEGYGLHRLTEGP----WSDTMCNWSPDGEWIAFASDRD  579 (721)
Q Consensus       519 ------SpDg~~l~~~s~~~g~~~l~~~d~-~~g~~~~~~~l~~~~----~~~~~~~~SpDG~~l~~~~~~~  579 (721)
                            |+||..++|-..      +|- |+ ++.....++.|..+.    ..+-...|.|..-||+.+..++
T Consensus       663 PLfas~sdDgtv~Vfhg~------VY~-Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~  727 (733)
T KOG0650|consen  663 PLFASGSDDGTVIVFHGM------VYN-DLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADG  727 (733)
T ss_pred             ceeeeecCCCcEEEEeee------eeh-hhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCc
Confidence                  455555554432      111 11 111222244454442    2356678999999998887764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=98.71  E-value=8.8e-07  Score=86.71  Aligned_cols=217  Identities=18%  Similarity=0.104  Sum_probs=151.2

Q ss_pred             CCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEc-CCCC--eEEEEecCCCCCCCCCcEEEEEEEccCCCCccce
Q 004971          430 GDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWD-PVRE--AVVYTSGGPEFASESSEVDIISINVDDVDGVSAV  503 (721)
Q Consensus       430 G~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~s-pdg~--~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  503 (721)
                      +++|.... ++.+.+||..|....++.  .+.+...+|- ++..  .++.++       .+..+.+|.++....    ..
T Consensus       115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas-------~Dqtl~Lw~~~~~~~----~~  183 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS-------MDQTLRLWKWNVGEN----KV  183 (423)
T ss_pred             CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEec-------CCceEEEEEecCchh----hh
Confidence            55666664 788999999988777776  4556656653 3332  244443       578899999987653    22


Q ss_pred             EEc---ccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCc-----------------------ccceEECcCCC
Q 004971          504 RRL---TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE-----------------------GYGLHRLTEGP  557 (721)
Q Consensus       504 ~~l---~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~-----------------------~~~~~~l~~~~  557 (721)
                      ..+   ..|...+..++..+||.+++..+.   +..|-+|+....+                       ..++..+..+.
T Consensus       184 ~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~---D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt  260 (423)
T KOG0313|consen  184 KALKVCRGHKRSVDSVSVDSSGTRFCSGSW---DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT  260 (423)
T ss_pred             hHHhHhcccccceeEEEecCCCCeEEeecc---cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc
Confidence            221   245567778899999999999988   7788888832111                       01233444556


Q ss_pred             cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCC
Q 004971          558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPIS  637 (721)
Q Consensus       558 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~  637 (721)
                      ..+..+.|++ ...++..+.++       .|..||+.+++...-..  .......+..+|.-+.|+..+.+.        
T Consensus       261 ~~Vs~V~w~d-~~v~yS~SwDH-------TIk~WDletg~~~~~~~--~~ksl~~i~~~~~~~Ll~~gssdr--------  322 (423)
T KOG0313|consen  261 EPVSSVVWSD-ATVIYSVSWDH-------TIKVWDLETGGLKSTLT--TNKSLNCISYSPLSKLLASGSSDR--------  322 (423)
T ss_pred             cceeeEEEcC-CCceEeecccc-------eEEEEEeecccceeeee--cCcceeEeecccccceeeecCCCC--------
Confidence            6678899997 55677777776       89999998886543322  455678899999988888776654        


Q ss_pred             CCCCCCCCccEEEEEcCCCC----eEEeccCCCCCCCceecCC---cCCccccc-ccc
Q 004971          638 TPHQYQPYGEIFKIKLDGSD----LKRLTQNSFEDGTPAWGPR---FIRPVDVE-EVK  687 (721)
Q Consensus       638 ~~~~~~~~~~l~~~d~~~~~----~~~lt~~~~~~~~~~~sp~---~l~~~~~~-~~~  687 (721)
                               +|.+||+.++.    ..++..|.+.+.+..|+|.   ++..++.| .++
T Consensus       323 ---------~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k  371 (423)
T KOG0313|consen  323 ---------HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK  371 (423)
T ss_pred             ---------ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence                     48889986652    3578888999999999994   66667666 444

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.70  E-value=3.9e-06  Score=79.90  Aligned_cols=267  Identities=10%  Similarity=0.049  Sum_probs=160.1

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      ..+|||....++. ...-++.+++|.+...+..       ..+....+...+..++|+. ||..++...     .+.++.
T Consensus        32 ~l~FSP~~~~~~~-A~SWD~tVR~wevq~~g~~-------~~ka~~~~~~PvL~v~Wsd-dgskVf~g~-----~Dk~~k   97 (347)
T KOG0647|consen   32 ALAFSPQADNLLA-AGSWDGTVRIWEVQNSGQL-------VPKAQQSHDGPVLDVCWSD-DGSKVFSGG-----CDKQAK   97 (347)
T ss_pred             eeEeccccCceEE-ecccCCceEEEEEecCCcc-------cchhhhccCCCeEEEEEcc-CCceEEeec-----cCCceE
Confidence            4589984333332 2334899999977665322       2333334455677899999 998776643     455699


Q ss_pred             EEECCCCceEEeecccCCCCcccCcEEcCCCC--EEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCc
Q 004971          351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSS--RVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP  428 (721)
Q Consensus       351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Sp  428 (721)
                      +||+++++..++.   .|...+..+.|-+...  -|+..+.+..         |..+|.+... .+.......+  .+.-
T Consensus        98 ~wDL~S~Q~~~v~---~Hd~pvkt~~wv~~~~~~cl~TGSWDKT---------lKfWD~R~~~-pv~t~~LPeR--vYa~  162 (347)
T KOG0647|consen   98 LWDLASGQVSQVA---AHDAPVKTCHWVPGMNYQCLVTGSWDKT---------LKFWDTRSSN-PVATLQLPER--VYAA  162 (347)
T ss_pred             EEEccCCCeeeee---ecccceeEEEEecCCCcceeEecccccc---------eeecccCCCC-eeeeeeccce--eeeh
Confidence            9999999866664   3466677777776655  5566666665         3344444331 1111111111  1112


Q ss_pred             CC--CEEEEE-eCCcEEEEECCCCce--EEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc
Q 004971          429 KG--DRIAFV-EFPGVYVVNSDGSNR--RQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV  500 (721)
Q Consensus       429 DG--~~la~~-~~~~l~v~d~~~g~~--~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~  500 (721)
                      |=  ..+++. .+..|.+++|..+..  +.+.   .-.++.++.-+|.+..++.+       -.+.+.|..++.......
T Consensus       163 Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs-------iEGrv~iq~id~~~~~~n  235 (347)
T KOG0647|consen  163 DVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS-------IEGRVAIQYIDDPNPKDN  235 (347)
T ss_pred             hccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee-------ecceEEEEecCCCCccCc
Confidence            21  123333 578899999976542  2332   34566777777777777765       346777777765311000


Q ss_pred             cce--EEc---ccC-CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEE
Q 004971          501 SAV--RRL---TTN-GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF  574 (721)
Q Consensus       501 ~~~--~~l---~~~-~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~  574 (721)
                      ...  .+-   ... -+.+..++|.|.-..|+.+..   +..+..||-+....  ++........+.-..|+-+|+.++|
T Consensus       236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs---DGtf~FWDkdar~k--Lk~s~~~~qpItcc~fn~~G~ifaY  310 (347)
T KOG0647|consen  236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS---DGTFSFWDKDARTK--LKTSETHPQPITCCSFNRNGSIFAY  310 (347)
T ss_pred             eeEEEeccCCCCCCceEEecceEeecccceEEEecC---CceEEEecchhhhh--hhccCcCCCccceeEecCCCCEEEE
Confidence            000  110   111 145567899998888888876   78888999875432  4444445566778899999999998


Q ss_pred             EEcc
Q 004971          575 ASDR  578 (721)
Q Consensus       575 ~~~~  578 (721)
                      +...
T Consensus       311 A~gY  314 (347)
T KOG0647|consen  311 ALGY  314 (347)
T ss_pred             Eeec
Confidence            8753

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=1.1e-06  Score=80.94  Aligned_cols=238  Identities=15%  Similarity=0.090  Sum_probs=152.1

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce-EEeecccCCCCcccCcEEcC--CCCEEEEEEeeCCCCCCC
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF-IELTRFVSPKTHHLNPFISP--DSSRVGYHKCRGGSTRED  397 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~-~~l~~~~~~~~~~~~~~~Sp--dg~~l~~~~~~~~~~~~~  397 (721)
                      .++++...= -|++|+..+     .+..|.++....+.. ..+..+.+|.+.+..++|..  -|..|+.++.++.     
T Consensus        13 ~IHda~lDy-ygkrlATcs-----SD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk-----   81 (299)
T KOG1332|consen   13 MIHDAQLDY-YGKRLATCS-----SDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK-----   81 (299)
T ss_pred             hhhHhhhhh-hcceeeeec-----CCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce-----
Confidence            344444444 789998854     345589998876553 66777788888888888876  6888888877776     


Q ss_pred             CcceeEEEeccCC----CCcceecccCCCCceeCcCCCE--EEEE-eCCcEEEEECCCC-c--eEEEe---ecCceeeEE
Q 004971          398 GNNQLLLENIKSP----LPDISLFRFDGSFPSFSPKGDR--IAFV-EFPGVYVVNSDGS-N--RRQVY---FKNAFSTVW  464 (721)
Q Consensus       398 ~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~SpDG~~--la~~-~~~~l~v~d~~~g-~--~~~l~---~~~~~~~~~  464 (721)
                          +.++.-.++    .............++|.|.+--  |+.. +++.|.+++.++. .  ...|.   ...+..+.|
T Consensus        82 ----VIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw  157 (299)
T KOG1332|consen   82 ----VIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW  157 (299)
T ss_pred             ----EEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence                344433333    1112223344566788777543  4444 5788888777543 1  22222   456788899


Q ss_pred             cCC---C-----------CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCC----CEEE
Q 004971          465 DPV---R-----------EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG----KWIV  526 (721)
Q Consensus       465 spd---g-----------~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg----~~l~  526 (721)
                      .|-   |           ++|+...       .+..+.||..+.+.-   ...+.|..+...+..++|.|.-    .+|+
T Consensus       158 apa~~~g~~~~~~~~~~~krlvSgG-------cDn~VkiW~~~~~~w---~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA  227 (299)
T KOG1332|consen  158 APASAPGSLVDQGPAAKVKRLVSGG-------CDNLVKIWKFDSDSW---KLERTLEGHKDWVRDVAWAPSVGLPKSTIA  227 (299)
T ss_pred             cCcCCCccccccCcccccceeeccC-------CccceeeeecCCcch---hhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence            886   4           3344332       478899999987642   2334577888888899999964    3455


Q ss_pred             EEEeeCCceeEEEEECCC-CcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971          527 FRSTRTGYKNLYIMDAEG-GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       527 ~~s~~~g~~~l~~~d~~~-g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                      ..+.   +.++.+|..+. .+.-+.+.+...+..+..++||+.|..|+++..+.       .+.+|.-
T Consensus       228 S~Sq---Dg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN-------kvtlwke  285 (299)
T KOG1332|consen  228 SCSQ---DGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN-------KVTLWKE  285 (299)
T ss_pred             EecC---CCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCc-------EEEEEEe
Confidence            5554   56677765542 12222333444445568899999999999988774       6666654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.68  E-value=2.4e-07  Score=95.97  Aligned_cols=187  Identities=16%  Similarity=0.177  Sum_probs=126.9

Q ss_pred             CCceeCc-CCCEEEEE-eCCcEEEEECCCCce--------EEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEE
Q 004971          422 SFPSFSP-KGDRIAFV-EFPGVYVVNSDGSNR--------RQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDI  489 (721)
Q Consensus       422 ~~~~~Sp-DG~~la~~-~~~~l~v~d~~~g~~--------~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i  489 (721)
                      ..+.|.| |.++||+. .++.|.+|.+..+..        ..|+  ...+..+.|.|=-.-++.++      ..+..++|
T Consensus       631 tDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~a------syd~Ti~l  704 (1012)
T KOG1445|consen  631 TDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVA------SYDSTIEL  704 (1012)
T ss_pred             eecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhh------hccceeee
Confidence            3468876 56788887 477888888754321        2233  45677888888544333332      25688999


Q ss_pred             EEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCc----CceeeEE
Q 004971          490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW----SDTMCNW  565 (721)
Q Consensus       490 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~----~~~~~~~  565 (721)
                      |++....     ...++..+...+..++|||||++++....   +..|+++...+++.    .+.++.+    .-..+.|
T Consensus       705 WDl~~~~-----~~~~l~gHtdqIf~~AWSpdGr~~AtVcK---Dg~~rVy~Prs~e~----pv~Eg~gpvgtRgARi~w  772 (1012)
T KOG1445|consen  705 WDLANAK-----LYSRLVGHTDQIFGIAWSPDGRRIATVCK---DGTLRVYEPRSREQ----PVYEGKGPVGTRGARILW  772 (1012)
T ss_pred             eehhhhh-----hhheeccCcCceeEEEECCCCcceeeeec---CceEEEeCCCCCCC----ccccCCCCccCcceeEEE
Confidence            9987654     45677788888999999999999999997   88999999987763    3443322    2356889


Q ss_pred             ccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC--CCCCcCCeEECCCCCEEEEEEecC
Q 004971          566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG--SAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       566 SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      .-||+.|++...+.   ...++|.+||..+-..+.+....  .....--+.+.+|...|+.+...+
T Consensus       773 acdgr~viv~Gfdk---~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD  835 (1012)
T KOG1445|consen  773 ACDGRIVIVVGFDK---SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGD  835 (1012)
T ss_pred             EecCcEEEEecccc---cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCC
Confidence            99999999888765   46678888987654322222110  122334567888887766655433

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=98.68  E-value=5.2e-06  Score=90.29  Aligned_cols=258  Identities=12%  Similarity=0.042  Sum_probs=164.9

Q ss_pred             CCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCC
Q 004971          344 SSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSF  423 (721)
Q Consensus       344 ~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  423 (721)
                      ..+..|.+||..++... ...+.+|.+.+..+++..-+..|+..+.+..         +.+++...+.-.-.........
T Consensus       225 s~~~tl~~~~~~~~~~i-~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t---------~rvWd~~sg~C~~~l~gh~stv  294 (537)
T KOG0274|consen  225 SDDSTLHLWDLNNGYLI-LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKT---------ERVWDCSTGECTHSLQGHTSSV  294 (537)
T ss_pred             CCCceeEEeecccceEE-EeeccCCCCCceeEEEecCCCEEEEEecCCc---------EEeEecCCCcEEEEecCCCceE
Confidence            35566899999988742 2336788888888888875666766665555         4444554442211111111111


Q ss_pred             ceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971          424 PSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG  499 (721)
Q Consensus       424 ~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~  499 (721)
                      ..++-.+..++.. .+..|.+|++.++....+.   .+.+..+...  +..++.++       .++.+.+|++....   
T Consensus       295 ~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs-------~d~~v~VW~~~~~~---  362 (537)
T KOG0274|consen  295 RCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGS-------YDGTVKVWDPRTGK---  362 (537)
T ss_pred             EEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEe-------cCceEEEEEhhhce---
Confidence            1233333233332 4788999999988876665   3455566665  77777776       46799999998543   


Q ss_pred             ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCC-cccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971          500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG-EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       500 ~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g-~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~  578 (721)
                        .++.+..+...+..+.+.+. ..++-.+.   +..|.+||+.++ +.  +..+..+...+..+  ...++.|+....+
T Consensus       363 --cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~---D~~IkvWdl~~~~~c--~~tl~~h~~~v~~l--~~~~~~Lvs~~aD  432 (537)
T KOG0274|consen  363 --CLKSLSGHTGRVYSLIVDSE-NRLLSGSL---DTTIKVWDLRTKRKC--IHTLQGHTSLVSSL--LLRDNFLVSSSAD  432 (537)
T ss_pred             --eeeeecCCcceEEEEEecCc-ceEEeeee---ccceEeecCCchhhh--hhhhcCCccccccc--ccccceeEecccc
Confidence              77888888877777766554 66776666   678999999988 43  55555555444333  3457788888877


Q ss_pred             CCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe
Q 004971          579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL  658 (721)
Q Consensus       579 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  658 (721)
                      +       .|.+||...++..+.....+.+.+..+++.   +..++.+.+.+                .+.+||+..++.
T Consensus       433 ~-------~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~----------------~~~l~dl~~~~~  486 (537)
T KOG0274|consen  433 G-------TIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDG----------------SVKLWDLRSGTL  486 (537)
T ss_pred             c-------cEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCC----------------eeEEEecccCch
Confidence            4       899999999988877653222333444443   34444554443                388889988865


Q ss_pred             E
Q 004971          659 K  659 (721)
Q Consensus       659 ~  659 (721)
                      .
T Consensus       487 ~  487 (537)
T KOG0274|consen  487 I  487 (537)
T ss_pred             h
Confidence            4

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.67  E-value=3.3e-05  Score=76.98  Aligned_cols=253  Identities=11%  Similarity=0.031  Sum_probs=142.9

Q ss_pred             cCceeecCCCCEEEEEEe-----cCCCCeeeEEEEECCCCceE---Eeecc-c-CCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971          323 FTPATSPGNNKFIAVATR-----RPTSSYRHIELFDLVKNKFI---ELTRF-V-SPKTHHLNPFISPDSSRVGYHKCRGG  392 (721)
Q Consensus       323 ~~~~~sp~dG~~la~~~~-----~~g~~~~~l~l~dl~tg~~~---~l~~~-~-~~~~~~~~~~~Spdg~~l~~~~~~~~  392 (721)
                      .++.+|| ||+.++.+..     ..|.-..-|.+||.++-..+   .|... . .........++|.||+++++......
T Consensus        39 ~~~~~sp-dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa  117 (342)
T PF06433_consen   39 GNVALSP-DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA  117 (342)
T ss_dssp             EEEEE-T-TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred             CceeECC-CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence            4577899 9999886542     12333445889999986532   22211 0 01123456799999999999887776


Q ss_pred             CCCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEeCCcEEEEECC-CCceEEE----e---ec-Ccee
Q 004971          393 STREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSD-GSNRRQV----Y---FK-NAFS  461 (721)
Q Consensus       393 ~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~-~g~~~~l----~---~~-~~~~  461 (721)
                             ..+-+.|+....-  .+....|..-+|  +++......+.++.+..+.++ .|+..+-    +   .. ....
T Consensus       118 -------~SVtVVDl~~~kvv~ei~~PGC~~iyP--~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~  188 (342)
T PF06433_consen  118 -------TSVTVVDLAAKKVVGEIDTPGCWLIYP--SGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEH  188 (342)
T ss_dssp             -------EEEEEEETTTTEEEEEEEGTSEEEEEE--EETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S-
T ss_pred             -------CeEEEEECCCCceeeeecCCCEEEEEe--cCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccc
Confidence                   6678888766521  111111111111  222234444567888887776 4554321    1   11 2236


Q ss_pred             eEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-------CC---CCCcceEEccCCCEEEEEEee
Q 004971          462 TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-------NG---KNNAFPSVSPDGKWIVFRSTR  531 (721)
Q Consensus       462 ~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-------~~---~~~~~~~~SpDg~~l~~~s~~  531 (721)
                      ++++.++.+++|.+.         +-.||.+++.+.. ......+..       ..   +.....++++..++|++.-..
T Consensus       189 ~~~~~~~~~~~F~Sy---------~G~v~~~dlsg~~-~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~  258 (342)
T PF06433_consen  189 PAYSRDGGRLYFVSY---------EGNVYSADLSGDS-AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQ  258 (342)
T ss_dssp             -EEETTTTEEEEEBT---------TSEEEEEEETTSS-EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE
T ss_pred             cceECCCCeEEEEec---------CCEEEEEeccCCc-ccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecC
Confidence            677778888888762         3456666665531 011111211       11   223347888888888876543


Q ss_pred             C-------CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971          532 T-------GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ  603 (721)
Q Consensus       532 ~-------g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  603 (721)
                      .       +...||.+|+.+++.  +.++... ..+.+++.|.|.+-++|+....     ...|+++|..+|+......
T Consensus       259 g~~gsHKdpgteVWv~D~~t~kr--v~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~-----~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  259 GGEGSHKDPGTEVWVYDLKTHKR--VARIPLE-HPIDSIAVSQDDKPLLYALSAG-----DGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             --TT-TTS-EEEEEEEETTTTEE--EEEEEEE-EEESEEEEESSSS-EEEEEETT-----TTEEEEEETTT--EEEEE-
T ss_pred             CCCCCccCCceEEEEEECCCCeE--EEEEeCC-CccceEEEccCCCcEEEEEcCC-----CCeEEEEeCcCCcEEeehh
Confidence            2       345899999999886  6666632 2245889999999777765432     2389999999998766543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.67  E-value=5.4e-07  Score=93.97  Aligned_cols=237  Identities=8%  Similarity=0.044  Sum_probs=153.0

Q ss_pred             CCCEEEEEEecCCCCeeeEEEEECCCCce---EE-eecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEe
Q 004971          331 NNKFIAVATRRPTSSYRHIELFDLVKNKF---IE-LTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLEN  406 (721)
Q Consensus       331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~---~~-l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~  406 (721)
                      .+++|+.     ++.++.|++|+......   .. +...+.|...+..++...+|+.|+.++.+..       ..+|-..
T Consensus        36 ~~ryLfT-----gGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtT-------VK~W~~~  103 (735)
T KOG0308|consen   36 NGRYLFT-----GGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTT-------VKVWNAH  103 (735)
T ss_pred             CCceEEe-----cCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCce-------EEEeecc
Confidence            5555544     34566799998764332   11 3344556667777888888998888877776       3333322


Q ss_pred             ccC--CCCcceecccCCCCcee-CcCCCEEEEEe-CCcEEEEECCCCceEEE------e--------ecCceeeEEcCCC
Q 004971          407 IKS--PLPDISLFRFDGSFPSF-SPKGDRIAFVE-FPGVYVVNSDGSNRRQV------Y--------FKNAFSTVWDPVR  468 (721)
Q Consensus       407 ~~~--~~~~~~~~~~~~~~~~~-SpDG~~la~~~-~~~l~v~d~~~g~~~~l------~--------~~~~~~~~~spdg  468 (721)
                      ...  -...+....--+..+++ .++...+|..+ +..|++||+.++..+.+      +        ...+.+++-.+.|
T Consensus       104 ~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~  183 (735)
T KOG0308|consen  104 KDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG  183 (735)
T ss_pred             cCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc
Confidence            111  01111111111223444 45555555554 88999999998744221      1        1245566777777


Q ss_pred             CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc
Q 004971          469 EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY  548 (721)
Q Consensus       469 ~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~  548 (721)
                      ..++-..       ..+.+++|+.....     +..+|..|..++..+..++||++++.++.   +..|.+||+...+. 
T Consensus       184 t~ivsGg-------tek~lr~wDprt~~-----kimkLrGHTdNVr~ll~~dDGt~~ls~sS---DgtIrlWdLgqQrC-  247 (735)
T KOG0308|consen  184 TIIVSGG-------TEKDLRLWDPRTCK-----KIMKLRGHTDNVRVLLVNDDGTRLLSASS---DGTIRLWDLGQQRC-  247 (735)
T ss_pred             eEEEecC-------cccceEEecccccc-----ceeeeeccccceEEEEEcCCCCeEeecCC---CceEEeeeccccce-
Confidence            4443332       46788999887754     66777788888899999999999999987   88999999975544 


Q ss_pred             ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC-ceEEeee
Q 004971          549 GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT-GLRKLIQ  603 (721)
Q Consensus       549 ~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~-~~~~l~~  603 (721)
                       +..+.-+...++.+.-+|+=++++++..++       .||+-|+.+. +.+.+..
T Consensus       248 -l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~-------~i~~Tdl~n~~~~tlick  295 (735)
T KOG0308|consen  248 -LATYIVHKEGVWALQSSPSFTHVYSGGRDG-------NIYRTDLRNPAKSTLICK  295 (735)
T ss_pred             -eeeEEeccCceEEEeeCCCcceEEecCCCC-------cEEecccCCchhheEeec
Confidence             555555555578888889888888888775       8999999884 4444443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.66  E-value=1.7e-07  Score=90.27  Aligned_cols=251  Identities=13%  Similarity=0.044  Sum_probs=155.2

Q ss_pred             CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC--CCcceecccC
Q 004971          343 TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP--LPDISLFRFD  420 (721)
Q Consensus       343 g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~  420 (721)
                      |..+..|.+||..+-.  -+..+.+|.+.+.+..+.  .+.|+..+.+.         .+.+++..++  .+.+......
T Consensus       213 GlrDnTikiWD~n~~~--c~~~L~GHtGSVLCLqyd--~rviisGSSDs---------TvrvWDv~tge~l~tlihHcea  279 (499)
T KOG0281|consen  213 GLRDNTIKIWDKNSLE--CLKILTGHTGSVLCLQYD--ERVIVSGSSDS---------TVRVWDVNTGEPLNTLIHHCEA  279 (499)
T ss_pred             ccccCceEEeccccHH--HHHhhhcCCCcEEeeecc--ceEEEecCCCc---------eEEEEeccCCchhhHHhhhcce
Confidence            4456679999987765  333446677777666665  44444433333         3555555544  3333323233


Q ss_pred             CCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEE
Q 004971          421 GSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN  493 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~  493 (721)
                      +-.+.|+. | +++.. .+..+.+||+.......+.      -..+..+.|  |.++++.++       .+..+++|.++
T Consensus       280 VLhlrf~n-g-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsAS-------gDRTikvW~~s  348 (499)
T KOG0281|consen  280 VLHLRFSN-G-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS-------GDRTIKVWSTS  348 (499)
T ss_pred             eEEEEEeC-C-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEec-------CCceEEEEecc
Confidence            33455653 3 55555 4778999999865522211      123444555  566777665       67899999987


Q ss_pred             ccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEE
Q 004971          494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIA  573 (721)
Q Consensus       494 ~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~  573 (721)
                      .-.     .++.+..+...+.-  .--.|+.++..+.   +..|.+||+..|..  ++.|..++.-+..+.|  |.+.|+
T Consensus       349 t~e-----fvRtl~gHkRGIAC--lQYr~rlvVSGSS---DntIRlwdi~~G~c--LRvLeGHEeLvRciRF--d~krIV  414 (499)
T KOG0281|consen  349 TCE-----FVRTLNGHKRGIAC--LQYRDRLVVSGSS---DNTIRLWDIECGAC--LRVLEGHEELVRCIRF--DNKRIV  414 (499)
T ss_pred             cee-----eehhhhccccccee--hhccCeEEEecCC---CceEEEEeccccHH--HHHHhchHHhhhheee--cCceee
Confidence            643     55666666533332  3335777766665   78999999999986  6666666655666777  467899


Q ss_pred             EEEccCCCCCCceeEEEEecCCCceE-Ee-------eecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCC
Q 004971          574 FASDRDNPGSGSFEMYLIHPNGTGLR-KL-------IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY  645 (721)
Q Consensus       574 ~~~~~~~~~~~~~~i~~~d~~~~~~~-~l-------~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~  645 (721)
                      .+..++       .|.+||+..+.-- ..       +...+.+.+..+.|  |...|+..+.+++               
T Consensus       415 SGaYDG-------kikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddt---------------  470 (499)
T KOG0281|consen  415 SGAYDG-------KIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDT---------------  470 (499)
T ss_pred             eccccc-------eEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCe---------------
Confidence            888886       8999999776422 11       11125567777777  4556766666653               


Q ss_pred             ccEEEEEcCCCC
Q 004971          646 GEIFKIKLDGSD  657 (721)
Q Consensus       646 ~~l~~~d~~~~~  657 (721)
                        |-+||...+.
T Consensus       471 --ILiWdFl~~~  480 (499)
T KOG0281|consen  471 --ILIWDFLNGP  480 (499)
T ss_pred             --EEEEEcCCCC
Confidence              8889876653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=2.1e-06  Score=89.21  Aligned_cols=231  Identities=10%  Similarity=0.080  Sum_probs=170.1

Q ss_pred             CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECC
Q 004971          369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSD  447 (721)
Q Consensus       369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~  447 (721)
                      ...+.++.+.|...+++..-..+.       ..||-++...-.+.+.......+...|-+--++++.. .+..|.+++..
T Consensus        13 SdRVKsVd~HPtePw~la~LynG~-------V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn   85 (794)
T KOG0276|consen   13 SDRVKSVDFHPTEPWILAALYNGD-------VQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN   85 (794)
T ss_pred             CCceeeeecCCCCceEEEeeecCe-------eEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence            344556778888888877766666       4555554443344444444445666776666788777 47899999999


Q ss_pred             CCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc-CCC
Q 004971          448 GSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP-DGK  523 (721)
Q Consensus       448 ~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp-Dg~  523 (721)
                      +++....+   ...++.++..|.--+++..+       ++-.+++|+.+..=    ...+.+..|...+..++|.| |..
T Consensus        86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsS-------DDm~iKlW~we~~w----a~~qtfeGH~HyVMqv~fnPkD~n  154 (794)
T KOG0276|consen   86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSS-------DDMTIKLWDWENEW----ACEQTFEGHEHYVMQVAFNPKDPN  154 (794)
T ss_pred             cceeeEEeeccccceeeeeecCCCCeEEecC-------CccEEEEeeccCce----eeeeEEcCcceEEEEEEecCCCcc
Confidence            98865554   67889999999999998876       57889999987643    26667777887888899998 677


Q ss_pred             EEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCC--CEEEEEEccCCCCCCceeEEEEecCCCceEEe
Q 004971          524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG--EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL  601 (721)
Q Consensus       524 ~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l  601 (721)
                      .++..+-   +..+.+|.+.+..+  ...+..+...++.+.+-+-|  -+|+.++++.       .|.+||-.++.+.+.
T Consensus       155 tFaS~sL---DrTVKVWslgs~~~--nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~-------tiKvWDyQtk~CV~T  222 (794)
T KOG0276|consen  155 TFASASL---DRTVKVWSLGSPHP--NFTLEGHEKGVNCVDYYTGGDKPYLISGADDL-------TIKVWDYQTKSCVQT  222 (794)
T ss_pred             ceeeeec---cccEEEEEcCCCCC--ceeeeccccCcceEEeccCCCcceEEecCCCc-------eEEEeecchHHHHHH
Confidence            8888887   78999999976554  66777777777888887655  4676666664       899999999877665


Q ss_pred             eecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          602 IQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       602 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      .. +|...+..+.|.|.=..|+..+.+++
T Consensus       223 Le-GHt~Nvs~v~fhp~lpiiisgsEDGT  250 (794)
T KOG0276|consen  223 LE-GHTNNVSFVFFHPELPIIISGSEDGT  250 (794)
T ss_pred             hh-cccccceEEEecCCCcEEEEecCCcc
Confidence            43 47778888999998777777666665

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=98.65  E-value=1.9e-06  Score=86.70  Aligned_cols=220  Identities=12%  Similarity=0.070  Sum_probs=142.4

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      .+..++-+| +|.+|+-..     ..+.||+|.+.+|+  .|..+..|...+..+.||-||..|+..+.++.       .
T Consensus        83 ~v~al~s~n-~G~~l~ag~-----i~g~lYlWelssG~--LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~-------V  147 (476)
T KOG0646|consen   83 PVHALASSN-LGYFLLAGT-----ISGNLYLWELSSGI--LLNVLSAHYQSITCLKFSDDGSHIITGSKDGA-------V  147 (476)
T ss_pred             ceeeeecCC-CceEEEeec-----ccCcEEEEEecccc--HHHHHHhhccceeEEEEeCCCcEEEecCCCcc-------E
Confidence            456778889 998776531     33459999999998  45555667788889999999999998777776       3


Q ss_pred             eeEEE-eccCC-----CCcceec---ccCCCCceeCcC--CCEEEEEe-CCcEEEEECCCCce-EEE-eecCceeeEEcC
Q 004971          401 QLLLE-NIKSP-----LPDISLF---RFDGSFPSFSPK--GDRIAFVE-FPGVYVVNSDGSNR-RQV-YFKNAFSTVWDP  466 (721)
Q Consensus       401 ~l~~~-~~~~~-----~~~~~~~---~~~~~~~~~SpD--G~~la~~~-~~~l~v~d~~~g~~-~~l-~~~~~~~~~~sp  466 (721)
                      .+|.. ++-..     ...+..+   ......+...+.  ..+|+.++ +..+.+||+..|.. ..+ ++..+..++.+|
T Consensus       148 ~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp  227 (476)
T KOG0646|consen  148 LVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP  227 (476)
T ss_pred             EEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc
Confidence            34432 11111     1111111   111122233322  23455554 78899999999874 223 377888999999


Q ss_pred             CCCeEEEEecCCCCCCCCCcEEEEEEEccCC-----------CCccceEEcccCCC--CCcceEEccCCCEEEEEEeeCC
Q 004971          467 VREAVVYTSGGPEFASESSEVDIISINVDDV-----------DGVSAVRRLTTNGK--NNAFPSVSPDGKWIVFRSTRTG  533 (721)
Q Consensus       467 dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~-----------~~~~~~~~l~~~~~--~~~~~~~SpDg~~l~~~s~~~g  533 (721)
                      -++.+++.+       .++.+.+..+..-.+           ....+...+..+.+  .+..++++-||..|+..+.   
T Consensus       228 ae~~~yiGt-------~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~---  297 (476)
T KOG0646|consen  228 AERVVYIGT-------EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE---  297 (476)
T ss_pred             cccEEEecC-------CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC---
Confidence            999998876       345555444432110           01123334444444  6778999999999988877   


Q ss_pred             ceeEEEEECCCCcccceEECcCCCcCceeeEEcc
Q 004971          534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP  567 (721)
Q Consensus       534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~Sp  567 (721)
                      +..+.+||+.+.+.  ++.+....+.++.+.+.|
T Consensus       298 dg~VcvWdi~S~Q~--iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  298 DGKVCVWDIYSKQC--IRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             CCCEEEEecchHHH--HHHHhhhccccceeEeec
Confidence            78999999998775  666765556667777744

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.64  E-value=1e-05  Score=81.67  Aligned_cols=214  Identities=18%  Similarity=0.228  Sum_probs=130.5

Q ss_pred             CCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971          421 GSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV  497 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~  497 (721)
                      +..+.|.++...|+++  ..+.|+.|+..+++.+.+. +........-.++..|+.+.         ..+.+++.+..+ 
T Consensus        27 gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~---------~g~~~~~~~~~~-   96 (307)
T COG3386          27 GEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE---------HGVRLLDPDTGG-   96 (307)
T ss_pred             ccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc---------cccEEEeccCCc-
Confidence            4568999999999988  4889999999888766665 44455544444444555443         223333332111 


Q ss_pred             CCccceEEcccCC-----CCCcceEEccCCCEEEEEEee------C---CceeEEEEECCCCcccceEECcCCCcCceee
Q 004971          498 DGVSAVRRLTTNG-----KNNAFPSVSPDGKWIVFRSTR------T---GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC  563 (721)
Q Consensus       498 ~~~~~~~~l~~~~-----~~~~~~~~SpDg~~l~~~s~~------~---g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~  563 (721)
                          ..+.+....     .........|||+ ++|....      .   ....||++|..++.   .+.+..+-...+.+
T Consensus        97 ----~~t~~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~---~~l~~~~~~~~NGl  168 (307)
T COG3386          97 ----KITLLAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGGV---VRLLDDDLTIPNGL  168 (307)
T ss_pred             ----eeEEeccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCCCCE---EEeecCcEEecCce
Confidence                112222211     2345578899988 4444333      1   23379999986444   44444434455789


Q ss_pred             EEccCCCEEEEEEccCCCCCCceeEEEEecCC--C---ceE-EeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCC
Q 004971          564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG--T---GLR-KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPIS  637 (721)
Q Consensus       564 ~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~--~---~~~-~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~  637 (721)
                      +|||||+.|+++....      ..|++++.+.  +   ..+ .+......+.....+...||.+.+ .....+.      
T Consensus       169 a~SpDg~tly~aDT~~------~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~-~a~~~g~------  235 (307)
T COG3386         169 AFSPDGKTLYVADTPA------NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWV-AAVWGGG------  235 (307)
T ss_pred             EECCCCCEEEEEeCCC------CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEE-ecccCCc------
Confidence            9999999999988753      3788887752  1   111 121111345666778888888554 3333332      


Q ss_pred             CCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceec
Q 004971          638 TPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWG  674 (721)
Q Consensus       638 ~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~s  674 (721)
                               .|.+++.++.....+.-......+|+|.
T Consensus       236 ---------~v~~~~pdG~l~~~i~lP~~~~t~~~Fg  263 (307)
T COG3386         236 ---------RVVRFNPDGKLLGEIKLPVKRPTNPAFG  263 (307)
T ss_pred             ---------eEEEECCCCcEEEEEECCCCCCccceEe
Confidence                     3899999966666665544667888885

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.63  E-value=3.4e-05  Score=75.77  Aligned_cols=149  Identities=15%  Similarity=0.208  Sum_probs=102.0

Q ss_pred             eeCcCCCEEEEEeCCcEEEEECCCCceE-EEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971          425 SFSPKGDRIAFVEFPGVYVVNSDGSNRR-QVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD  498 (721)
Q Consensus       425 ~~SpDG~~la~~~~~~l~v~d~~~g~~~-~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~  498 (721)
                      ++--+-++|+++-...||++|+..-+.. .|.     ....-.+..++.+.+|+|-..     ...+.+.||+...-.  
T Consensus        92 ~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s-----~t~GdV~l~d~~nl~--  164 (391)
T KOG2110|consen   92 AVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS-----TTSGDVVLFDTINLQ--  164 (391)
T ss_pred             EEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC-----CCCceEEEEEcccce--
Confidence            3434566788876777999999876532 222     112334555556679988643     246777787765432  


Q ss_pred             CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCC--cCceeeEEccCCCEEEEEE
Q 004971          499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP--WSDTMCNWSPDGEWIAFAS  576 (721)
Q Consensus       499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~--~~~~~~~~SpDG~~l~~~~  576 (721)
                         ....+..|.+....++|+|||..||.++++  ..-|+++.+.+|+.  +.++-.+.  ..+.+++||||++.|..++
T Consensus       165 ---~v~~I~aH~~~lAalafs~~G~llATASeK--GTVIRVf~v~~G~k--l~eFRRG~~~~~IySL~Fs~ds~~L~~sS  237 (391)
T KOG2110|consen  165 ---PVNTINAHKGPLAALAFSPDGTLLATASEK--GTVIRVFSVPEGQK--LYEFRRGTYPVSIYSLSFSPDSQFLAASS  237 (391)
T ss_pred             ---eeeEEEecCCceeEEEECCCCCEEEEeccC--ceEEEEEEcCCccE--eeeeeCCceeeEEEEEEECCCCCeEEEec
Confidence               455677788888999999999999999984  34577888888875  55554443  3467899999999988888


Q ss_pred             ccCCCCCCceeEEEEe
Q 004971          577 DRDNPGSGSFEMYLIH  592 (721)
Q Consensus       577 ~~~~~~~~~~~i~~~d  592 (721)
                      +.+     ..+||..+
T Consensus       238 ~Te-----TVHiFKL~  248 (391)
T KOG2110|consen  238 NTE-----TVHIFKLE  248 (391)
T ss_pred             CCC-----eEEEEEec
Confidence            763     34455444

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.62  E-value=5.6e-07  Score=95.70  Aligned_cols=215  Identities=12%  Similarity=0.110  Sum_probs=144.3

Q ss_pred             ceeCc-CCCEEEEE-eCCcEEEEECCCC-ceEEE--e---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971          424 PSFSP-KGDRIAFV-EFPGVYVVNSDGS-NRRQV--Y---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD  495 (721)
Q Consensus       424 ~~~Sp-DG~~la~~-~~~~l~v~d~~~g-~~~~l--~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~  495 (721)
                      +.|+. +.+.||.+ ..+.|.+||+.-. ..+.+  +   ...+..+.|++--..+++..      ..++.+++|++..+
T Consensus        93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG------SQDg~vK~~DlR~~  166 (839)
T KOG0269|consen   93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISG------SQDGTVKCWDLRSK  166 (839)
T ss_pred             cccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEec------CCCceEEEEeeecc
Confidence            45542 34456666 4788999999652 22222  2   45677899999888888776      46899999999887


Q ss_pred             CCCCccceEEcccCCCCCcceEEccC-CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEE
Q 004971          496 DVDGVSAVRRLTTNGKNNAFPSVSPD-GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF  574 (721)
Q Consensus       496 ~~~~~~~~~~l~~~~~~~~~~~~SpD-g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~  574 (721)
                      ..    . .........+..+.|+|- +.+++...+   .+.|.+||+..-. +...+++.+.+.+.-+.|+|++.+||.
T Consensus       167 ~S----~-~t~~~nSESiRDV~fsp~~~~~F~s~~d---sG~lqlWDlRqp~-r~~~k~~AH~GpV~c~nwhPnr~~lAT  237 (839)
T KOG0269|consen  167 KS----K-STFRSNSESIRDVKFSPGYGNKFASIHD---SGYLQLWDLRQPD-RCEKKLTAHNGPVLCLNWHPNREWLAT  237 (839)
T ss_pred             cc----c-ccccccchhhhceeeccCCCceEEEecC---CceEEEeeccCch-hHHHHhhcccCceEEEeecCCCceeee
Confidence            63    2 122223357788999985 444444444   5679999997543 235678888888899999999999999


Q ss_pred             EEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971          575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD  654 (721)
Q Consensus       575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  654 (721)
                      ++.+.       .|.+||+.+++...+........+..+.|-|+-.+.+.+..-...              ..|++||+.
T Consensus       238 GGRDK-------~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~d--------------tsV~VWDvr  296 (839)
T KOG0269|consen  238 GGRDK-------MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVD--------------TSVHVWDVR  296 (839)
T ss_pred             cCCCc-------cEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcccc--------------ceEEEEeec
Confidence            98765       899999987765543322245567889999998775433332211              249999987


Q ss_pred             CCC--eEEeccCCCCCCCceec
Q 004971          655 GSD--LKRLTQNSFEDGTPAWG  674 (721)
Q Consensus       655 ~~~--~~~lt~~~~~~~~~~~s  674 (721)
                      -.=  -..+..|.......+|.
T Consensus       297 RPYIP~~t~~eH~~~vt~i~W~  318 (839)
T KOG0269|consen  297 RPYIPYATFLEHTDSVTGIAWD  318 (839)
T ss_pred             cccccceeeeccCccccceecc
Confidence            652  23444455556666774

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.61  E-value=2.5e-05  Score=92.67  Aligned_cols=238  Identities=11%  Similarity=0.045  Sum_probs=136.3

Q ss_pred             cCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC-----------CCCcccCcEEcCCCCEEEEEEeeC
Q 004971          323 FTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS-----------PKTHHLNPFISPDSSRVGYHKCRG  391 (721)
Q Consensus       323 ~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~-----------~~~~~~~~~~Spdg~~l~~~~~~~  391 (721)
                      ..+++++ ++..|+++...    ..+|+++|..+.....+.....           .-....++++++++..|+++...+
T Consensus       571 ~gvavd~-~~g~lyVaDs~----n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n  645 (1057)
T PLN02919        571 GKLAIDL-LNNRLFISDSN----HNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN  645 (1057)
T ss_pred             ceEEEEC-CCCeEEEEECC----CCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence            3567887 76667765432    3459999987543333321000           011245678999988877754332


Q ss_pred             CCCCCCCcceeEEEeccCCCC-cce-----------------ecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCce
Q 004971          392 GSTREDGNNQLLLENIKSPLP-DIS-----------------LFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNR  451 (721)
Q Consensus       392 ~~~~~~~~~~l~~~~~~~~~~-~~~-----------------~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~  451 (721)
                      .        .+...++.++.. .+.                 ..-.....++++|++..|+++  ....|++++..++..
T Consensus       646 ~--------~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v  717 (1057)
T PLN02919        646 H--------ALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT  717 (1057)
T ss_pred             c--------eEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence            2        233333322210 000                 000112346889966667666  467899999987765


Q ss_pred             EEEe-e----------------cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc-------
Q 004971          452 RQVY-F----------------KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT-------  507 (721)
Q Consensus       452 ~~l~-~----------------~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~-------  507 (721)
                      ..+. .                .....++++|||++|+++..      .++.+++|+++..+      ...+.       
T Consensus       718 ~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs------~n~~Irv~D~~tg~------~~~~~gg~~~~~  785 (1057)
T PLN02919        718 RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS------ESSSIRALDLKTGG------SRLLAGGDPTFS  785 (1057)
T ss_pred             EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC------CCCeEEEEECCCCc------EEEEEecccccC
Confidence            4332 1                12346899999999988752      34566666554321      11110       


Q ss_pred             -------cC--------CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-C-------------Cc
Q 004971          508 -------TN--------GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-G-------------PW  558 (721)
Q Consensus       508 -------~~--------~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~-------------~~  558 (721)
                             ..        -.....+++++||+ |+++..  ++..|.+||.+++.   +..+.. +             -.
T Consensus       786 ~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs--~N~rIrviD~~tg~---v~tiaG~G~~G~~dG~~~~a~l~  859 (1057)
T PLN02919        786 DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADS--YNHKIKKLDPATKR---VTTLAGTGKAGFKDGKALKAQLS  859 (1057)
T ss_pred             cccccccCCCCchhhhhccCCceeeEeCCCc-EEEEEC--CCCEEEEEECCCCe---EEEEeccCCcCCCCCcccccccC
Confidence                   00        01235678999997 444432  26789999998877   333321 1             01


Q ss_pred             CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971          559 SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL  598 (721)
Q Consensus       559 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~  598 (721)
                      ....+++++||+ |+++....      ..|.+||+.+++.
T Consensus       860 ~P~GIavd~dG~-lyVaDt~N------n~Irvid~~~~~~  892 (1057)
T PLN02919        860 EPAGLALGENGR-LFVADTNN------SLIRYLDLNKGEA  892 (1057)
T ss_pred             CceEEEEeCCCC-EEEEECCC------CEEEEEECCCCcc
Confidence            245689999997 55554332      3899999998865

>KOG4328 consensus WD40 protein [Function unknown]

Probab=98.59  E-value=1e-05  Score=81.34  Aligned_cols=287  Identities=14%  Similarity=0.168  Sum_probs=174.1

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce--EEeecccCCCCcccCcEEcCCCC-EEEEEEeeCCCCCCC
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF--IELTRFVSPKTHHLNPFISPDSS-RVGYHKCRGGSTRED  397 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~--~~l~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~~~~  397 (721)
                      .+..++|.|+-.+.++.+.    ...++|-+||+.+.+.  ..+..+..+...+.++.|+|... .|+..+.++.     
T Consensus       188 Rit~l~fHPt~~~~lva~G----dK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt-----  258 (498)
T KOG4328|consen  188 RITSLAFHPTENRKLVAVG----DKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT-----  258 (498)
T ss_pred             ceEEEEecccCcceEEEEc----cCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce-----
Confidence            4567889994443555543    3345599999963321  12233344566788899999764 5555555555     


Q ss_pred             CcceeEEEeccCCCCccee-c---ccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCc--e--EEEeecCceeeEEcCCC
Q 004971          398 GNNQLLLENIKSPLPDISL-F---RFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSN--R--RQVYFKNAFSTVWDPVR  468 (721)
Q Consensus       398 ~~~~l~~~~~~~~~~~~~~-~---~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~--~--~~l~~~~~~~~~~spdg  468 (721)
                          +...++......... .   ...-....++.+...+++.. -+.+.++|+..+.  .  ..+....+..+++.|-.
T Consensus       259 ----iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~  334 (498)
T KOG4328|consen  259 ----IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC  334 (498)
T ss_pred             ----eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC
Confidence                455565544221111 1   01112346666666777763 4467788876443  2  23335688999999998


Q ss_pred             CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC----C
Q 004971          469 EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE----G  544 (721)
Q Consensus       469 ~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~----~  544 (721)
                      .+++.++      ..+....||++..-..... ..-....+...+....|||+|-.|+..+.   +..|.+||..    .
T Consensus       335 p~~laT~------s~D~T~kIWD~R~l~~K~s-p~lst~~HrrsV~sAyFSPs~gtl~TT~~---D~~IRv~dss~~sa~  404 (498)
T KOG4328|consen  335 PWFLATA------SLDQTAKIWDLRQLRGKAS-PFLSTLPHRRSVNSAYFSPSGGTLLTTCQ---DNEIRVFDSSCISAK  404 (498)
T ss_pred             chheeec------ccCcceeeeehhhhcCCCC-cceecccccceeeeeEEcCCCCceEeecc---CCceEEeeccccccc
Confidence            8887776      3678899999864332000 01222334467788899999999998887   7899999983    2


Q ss_pred             CcccceEECcCCC----c-CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE-eeecCCCCCcCCeEECCC
Q 004971          545 GEGYGLHRLTEGP----W-SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK-LIQSGSAGRANHPYFSPD  618 (721)
Q Consensus       545 g~~~~~~~l~~~~----~-~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~~~SpD  618 (721)
                      -++  ...|....    + ......|.||-..|+++....       .|-++|..+++... +-.+....-.....|.|-
T Consensus       405 ~~p--~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r-------~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~  475 (498)
T KOG4328|consen  405 DEP--LGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPR-------PIDVFDGNGGQMVCELHDPESSTIPSVNEFHPM  475 (498)
T ss_pred             CCc--cceeeccCcccccccchhheeCCCccEEEEeccCc-------ceeEEcCCCCEEeeeccCccccccccceeeccc
Confidence            221  22232211    1 123568999988888877653       68888988876332 221101122234679998


Q ss_pred             CCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971          619 GKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       619 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                      +..++..++..+                .||+|.-++
T Consensus       476 ~~~~~aG~~s~G----------------ki~vft~k~  496 (498)
T KOG4328|consen  476 RDTLAAGGNSSG----------------KIYVFTNKK  496 (498)
T ss_pred             ccceeccCCccc----------------eEEEEecCC
Confidence            887776666654                488886544

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.59  E-value=1.7e-06  Score=88.43  Aligned_cols=196  Identities=16%  Similarity=0.172  Sum_probs=121.5

Q ss_pred             CcCCCEEEE-EeCCcEEEEECCCCceEEEe-------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971          427 SPKGDRIAF-VEFPGVYVVNSDGSNRRQVY-------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD  498 (721)
Q Consensus       427 SpDG~~la~-~~~~~l~v~d~~~g~~~~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~  498 (721)
                      .|+|--+.+ ...+++.++|....+...+.       ...++.+.|-|.+..++.++.      ..++..+|....... 
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~------~sGnlyly~~~~~~~-  254 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAH------ASGNLYLYDKEIVCG-  254 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEE------ecCceEEeecccccc-
Confidence            345533333 35677888776544332222       456788999998887777662      345666665422110 


Q ss_pred             CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971          499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~  578 (721)
                                 . .......-+++..+.......      ..   +..+  +.+.......+...+|||||++||..+.+
T Consensus       255 -----------~-t~p~~~~~k~~~~f~i~t~ks------k~---~rNP--v~~w~~~~g~in~f~FS~DG~~LA~VSqD  311 (636)
T KOG2394|consen  255 -----------A-TAPSYQALKDGDQFAILTSKS------KK---TRNP--VARWHIGEGSINEFAFSPDGKYLATVSQD  311 (636)
T ss_pred             -----------C-CCCcccccCCCCeeEEeeeec------cc---cCCc--cceeEeccccccceeEcCCCceEEEEecC
Confidence                       0 111122335666665544311      11   1111  33344444567889999999999999988


Q ss_pred             CCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe
Q 004971          579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL  658 (721)
Q Consensus       579 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  658 (721)
                      +       .|.++|.++.++.-+... --+..-.+.||||||+|+....++-                 |-+|...-+++
T Consensus       312 G-------fLRvF~fdt~eLlg~mkS-YFGGLLCvcWSPDGKyIvtGGEDDL-----------------VtVwSf~erRV  366 (636)
T KOG2394|consen  312 G-------FLRIFDFDTQELLGVMKS-YFGGLLCVCWSPDGKYIVTGGEDDL-----------------VTVWSFEERRV  366 (636)
T ss_pred             c-------eEEEeeccHHHHHHHHHh-hccceEEEEEcCCccEEEecCCcce-----------------EEEEEeccceE
Confidence            6       788888888766555432 3355678999999999998777663                 66666655544


Q ss_pred             -EEeccCCCCCCCceecCCc
Q 004971          659 -KRLTQNSFEDGTPAWGPRF  677 (721)
Q Consensus       659 -~~lt~~~~~~~~~~~sp~~  677 (721)
                       .+=..|..++...+|.|+.
T Consensus       367 VARGqGHkSWVs~VaFDpyt  386 (636)
T KOG2394|consen  367 VARGQGHKSWVSVVAFDPYT  386 (636)
T ss_pred             EEeccccccceeeEeecccc
Confidence             3555577788889999853

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.59  E-value=8.9e-06  Score=77.98  Aligned_cols=225  Identities=11%  Similarity=0.055  Sum_probs=138.2

Q ss_pred             ccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC--CcceecccCCCCceeCcCCC--EEEEE-eCC
Q 004971          365 FVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL--PDISLFRFDGSFPSFSPKGD--RIAFV-EFP  439 (721)
Q Consensus       365 ~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~SpDG~--~la~~-~~~  439 (721)
                      +..|...+..++.+  |.+++..+.+..         |.++|+....  ..+.........+.|.++-+  +|... .++
T Consensus        39 ~~aH~~sitavAVs--~~~~aSGssDet---------I~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG  107 (362)
T KOG0294|consen   39 FSAHAGSITALAVS--GPYVASGSSDET---------IHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG  107 (362)
T ss_pred             ccccccceeEEEec--ceeEeccCCCCc---------EEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCC
Confidence            33445555556665  777776555544         5666664432  22222333344566766654  55555 588


Q ss_pred             cEEEEECCCCceE-EEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcce
Q 004971          440 GVYVVNSDGSNRR-QVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFP  516 (721)
Q Consensus       440 ~l~v~d~~~g~~~-~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~  516 (721)
                      .|.+|+...=+.. .+.  .+.++.++..|.|+..+.+.       .+..+++|.+-....   .....|..   ....+
T Consensus       108 ~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg-------~D~~lr~WNLV~Gr~---a~v~~L~~---~at~v  174 (362)
T KOG0294|consen  108 HIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVG-------GDQVLRTWNLVRGRV---AFVLNLKN---KATLV  174 (362)
T ss_pred             cEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEc-------CCceeeeehhhcCcc---ceeeccCC---cceee
Confidence            9999998654422 222  45689999999998766664       578888887754332   12233332   34458


Q ss_pred             EEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971          517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                      .|+|.|.++++..    ...|-+|.+++...  ...+... -.+..+.|- ++..|+++..+.       .|..+|.+..
T Consensus       175 ~w~~~Gd~F~v~~----~~~i~i~q~d~A~v--~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~-------~i~~~D~ds~  239 (362)
T KOG0294|consen  175 SWSPQGDHFVVSG----RNKIDIYQLDNASV--FREIENP-KRILCATFL-DGSELLVGGDNE-------WISLKDTDSD  239 (362)
T ss_pred             EEcCCCCEEEEEe----ccEEEEEecccHhH--hhhhhcc-ccceeeeec-CCceEEEecCCc-------eEEEeccCCC
Confidence            9999999888877    35566666665442  3333332 222334444 567787777764       7999998876


Q ss_pred             ceEEeeecCCCCCcCCeE--ECCCCCEEEEEEecC
Q 004971          597 GLRKLIQSGSAGRANHPY--FSPDGKSIVFTSDYG  629 (721)
Q Consensus       597 ~~~~l~~~~~~~~~~~~~--~SpDG~~l~~~~~~~  629 (721)
                      .+..... +|...+..+.  -.|++.+|+.++.++
T Consensus       240 ~~~~~~~-AH~~RVK~i~~~~~~~~~~lvTaSSDG  273 (362)
T KOG0294|consen  240 TPLTEFL-AHENRVKDIASYTNPEHEYLVTASSDG  273 (362)
T ss_pred             ccceeee-cchhheeeeEEEecCCceEEEEeccCc
Confidence            5444333 2667776665  367788888888776

>KOG4328 consensus WD40 protein [Function unknown]

Probab=98.58  E-value=1.3e-05  Score=80.63  Aligned_cols=286  Identities=12%  Similarity=0.111  Sum_probs=173.0

Q ss_pred             cceeccCCe--EEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeee
Q 004971          271 WPCWVDEST--LFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRH  348 (721)
Q Consensus       271 ~~~ws~dg~--l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~  348 (721)
                      ..+|+|-..  +++  ..+..|.+-+|.......     +.......+.+...+..+.|+|++-.+|+. +.    .++.
T Consensus       191 ~l~fHPt~~~~lva--~GdK~G~VG~Wn~~~~~~-----d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s-sS----yDGt  258 (498)
T KOG4328|consen  191 SLAFHPTENRKLVA--VGDKGGQVGLWNFGTQEK-----DKDGVYLFTPHSGPVSGLKFSPANTSQIYS-SS----YDGT  258 (498)
T ss_pred             EEEecccCcceEEE--EccCCCcEEEEecCCCCC-----ccCceEEeccCCccccceEecCCChhheee-ec----cCce
Confidence            557887633  444  355578899997641111     112556677777788999999944444544 33    3456


Q ss_pred             EEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC-CCcceecccCCCCceeC
Q 004971          349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP-LPDISLFRFDGSFPSFS  427 (721)
Q Consensus       349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~S  427 (721)
                      |++.|++++....+..............++.+...+++...-+.       ..++....... ...+.........+++.
T Consensus       259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~-------f~~iD~R~~~s~~~~~~lh~kKI~sv~~N  331 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGN-------FNVIDLRTDGSEYENLRLHKKKITSVALN  331 (498)
T ss_pred             eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccc-------eEEEEeecCCccchhhhhhhcccceeecC
Confidence            99999998865555443223444566778888888887655443       23333322222 23344444456678888


Q ss_pred             cCCCEEEEE-e-CCcEEEEECCCC--ceE-EEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc-cCC
Q 004971          428 PKGDRIAFV-E-FPGVYVVNSDGS--NRR-QVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV-DDV  497 (721)
Q Consensus       428 pDG~~la~~-~-~~~l~v~d~~~g--~~~-~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~-~~~  497 (721)
                      |--.++... + +..+.+||+..-  +.. .|.    ...+.+..|||+|-.|+.++       .+.+++||+..- ...
T Consensus       332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~-------~D~~IRv~dss~~sa~  404 (498)
T KOG4328|consen  332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC-------QDNEIRVFDSSCISAK  404 (498)
T ss_pred             CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec-------cCCceEEeeccccccc
Confidence            877665444 3 777889998532  221 222    34677899999999988776       578999998841 111


Q ss_pred             CCccceEEcccCC-----CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCC--cCceeeEEccCCC
Q 004971          498 DGVSAVRRLTTNG-----KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP--WSDTMCNWSPDGE  570 (721)
Q Consensus       498 ~~~~~~~~l~~~~-----~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~--~~~~~~~~SpDG~  570 (721)
                      .  .....+....     -.....+|.||-..|++...   ...|-++|..+++.  +..+....  ....-..|.|-+.
T Consensus       405 ~--~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~---~r~IDv~~~~~~q~--v~el~~P~~~tI~~vn~~HP~~~  477 (498)
T KOG4328|consen  405 D--EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY---PRPIDVFDGNGGQM--VCELHDPESSTIPSVNEFHPMRD  477 (498)
T ss_pred             C--CccceeeccCcccccccchhheeCCCccEEEEecc---CcceeEEcCCCCEE--eeeccCccccccccceeeccccc
Confidence            0  0111111111     12344689999888887765   45688888887763  33333222  1223457999888


Q ss_pred             EEEEEEccCCCCCCceeEEEEecCC
Q 004971          571 WIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       571 ~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      .++.+++..      ..||+|--++
T Consensus       478 ~~~aG~~s~------Gki~vft~k~  496 (498)
T KOG4328|consen  478 TLAAGGNSS------GKIYVFTNKK  496 (498)
T ss_pred             ceeccCCcc------ceEEEEecCC
Confidence            676666553      3788776443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=98.57  E-value=2e-05  Score=75.51  Aligned_cols=292  Identities=14%  Similarity=0.058  Sum_probs=166.9

Q ss_pred             CcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971          320 LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN  399 (721)
Q Consensus       320 ~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~  399 (721)
                      ..+..+.|+| .+..|+..+.     ++.|.+||......+...   .+...+...+|.++ ..+++...++.       
T Consensus        14 d~IS~v~f~~-~~~~LLvssW-----DgslrlYdv~~~~l~~~~---~~~~plL~c~F~d~-~~~~~G~~dg~-------   76 (323)
T KOG1036|consen   14 DGISSVKFSP-SSSDLLVSSW-----DGSLRLYDVPANSLKLKF---KHGAPLLDCAFADE-STIVTGGLDGQ-------   76 (323)
T ss_pred             hceeeEEEcC-cCCcEEEEec-----cCcEEEEeccchhhhhhe---ecCCceeeeeccCC-ceEEEeccCce-------
Confidence            3567889999 8888877653     345999999877543332   23556667788764 35555444443       


Q ss_pred             ceeEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecC
Q 004971          400 NQLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGG  477 (721)
Q Consensus       400 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~  477 (721)
                        +...|+.++.. .+.........+..++--..++..+ +..|.+||.......-.....-.-+..+-.|.+|++.+  
T Consensus        77 --vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~--  152 (323)
T KOG1036|consen   77 --VRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGT--  152 (323)
T ss_pred             --EEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEee--
Confidence              55666655432 2222222233345554333444443 78899999875322111112223344455677888865  


Q ss_pred             CCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce-------
Q 004971          478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL-------  550 (721)
Q Consensus       478 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~-------  550 (721)
                           .+..+.+|++..-..   ...++-.........+++-|++.-.+..+-   +.++++=.++..+..+-       
T Consensus       153 -----~~r~v~iyDLRn~~~---~~q~reS~lkyqtR~v~~~pn~eGy~~sSi---eGRVavE~~d~s~~~~skkyaFkC  221 (323)
T KOG1036|consen  153 -----SDRKVLIYDLRNLDE---PFQRRESSLKYQTRCVALVPNGEGYVVSSI---EGRVAVEYFDDSEEAQSKKYAFKC  221 (323)
T ss_pred             -----cCceEEEEEcccccc---hhhhccccceeEEEEEEEecCCCceEEEee---cceEEEEccCCchHHhhhceeEEe
Confidence                 467888888865432   011111122245566788887666666654   45555543433311000       


Q ss_pred             EECcCC----CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971          551 HRLTEG----PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS  626 (721)
Q Consensus       551 ~~l~~~----~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~  626 (721)
                      .+....    ...++.++|+|=-+.||.+..++       -|-+||+...+...-... ....+..++|+-||..|+.++
T Consensus       222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG-------~V~~Wd~~~rKrl~q~~~-~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG-------IVNIWDLFNRKRLKQLAK-YETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             eecccCCceEEEEeceeEeccccceEEecCCCc-------eEEEccCcchhhhhhccC-CCCceEEEEeccCCCeEEEEe
Confidence            011111    23467899999888888888875       899999977653333221 335578899999999999887


Q ss_pred             ecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971          627 DYGGISAEPISTPHQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       627 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~  656 (721)
                      ......+   ..+  -++.+.|++.++..-
T Consensus       294 sy~ye~~---~~~--~~~~~~i~I~~l~d~  318 (323)
T KOG1036|consen  294 SYQYERA---DTP--THERNAIFIRDLTDY  318 (323)
T ss_pred             chhhhcC---CCC--CCCCCceEEEecccc
Confidence            6432110   011  334556887776543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=98.57  E-value=2.8e-05  Score=74.55  Aligned_cols=290  Identities=14%  Similarity=0.085  Sum_probs=158.9

Q ss_pred             ccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCC--cceeccCCeEEEEeccCCCCcEEEE
Q 004971          218 DFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGG--WPCWVDESTLFFHRKSEEDDWISVY  295 (721)
Q Consensus       218 ~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~  295 (721)
                      .+...|||.+..|+.++.++            .|.+|+....+.+........  ..+|.++.+++.   ..-+|.+..|
T Consensus        16 IS~v~f~~~~~~LLvssWDg------------slrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~---G~~dg~vr~~   80 (323)
T KOG1036|consen   16 ISSVKFSPSSSDLLVSSWDG------------SLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVT---GGLDGQVRRY   80 (323)
T ss_pred             eeeEEEcCcCCcEEEEeccC------------cEEEEeccchhhhhheecCCceeeeeccCCceEEE---eccCceEEEE
Confidence            34458999888888866443            466777665554443333332  337888867766   3336777777


Q ss_pred             EEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCc
Q 004971          296 KVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNP  375 (721)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~  375 (721)
                      ++...          ...++-.+...+..+..++..| .++.     |+-+..|.+||.....  ..... .....+.. 
T Consensus        81 Dln~~----------~~~~igth~~~i~ci~~~~~~~-~vIs-----gsWD~~ik~wD~R~~~--~~~~~-d~~kkVy~-  140 (323)
T KOG1036|consen   81 DLNTG----------NEDQIGTHDEGIRCIEYSYEVG-CVIS-----GSWDKTIKFWDPRNKV--VVGTF-DQGKKVYC-  140 (323)
T ss_pred             EecCC----------cceeeccCCCceEEEEeeccCC-eEEE-----cccCccEEEEeccccc--ccccc-ccCceEEE-
Confidence            54332          3455556666667777777334 3444     4456779999987522  11111 11223433 


Q ss_pred             EEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcc----eecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCc
Q 004971          376 FISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI----SLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSN  450 (721)
Q Consensus       376 ~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~  450 (721)
                       .+-.|.+|++...+..         +.+++++.-....    ..+....+.++.-|++.-.+..+ ++.+.+=.++..+
T Consensus       141 -~~v~g~~LvVg~~~r~---------v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~  210 (323)
T KOG1036|consen  141 -MDVSGNRLVVGTSDRK---------VLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSE  210 (323)
T ss_pred             -EeccCCEEEEeecCce---------EEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCch
Confidence             3334777776443333         4555654332111    11223334455555444333332 4444443332221


Q ss_pred             eEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEe
Q 004971          451 RRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRST  530 (721)
Q Consensus       451 ~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~  530 (721)
                      .              ...++.+|-+...   ..++.-.                     -..+..++|+|--+.++....
T Consensus       211 ~--------------~~skkyaFkCHr~---~~~~~~~---------------------~yPVNai~Fhp~~~tfaTgGs  252 (323)
T KOG1036|consen  211 E--------------AQSKKYAFKCHRL---SEKDTEI---------------------IYPVNAIAFHPIHGTFATGGS  252 (323)
T ss_pred             H--------------HhhhceeEEeeec---ccCCceE---------------------EEEeceeEeccccceEEecCC
Confidence            0              0122333322100   0000000                     134566899998888887766


Q ss_pred             eCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCC-----CCCceeEEEEecCC
Q 004971          531 RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP-----GSGSFEMYLIHPNG  595 (721)
Q Consensus       531 ~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~-----~~~~~~i~~~d~~~  595 (721)
                         +.-+-+||+.+.+.  +.++......+..++|+-||..||++..-...     ......|++.++..
T Consensus       253 ---DG~V~~Wd~~~rKr--l~q~~~~~~SI~slsfs~dG~~LAia~sy~ye~~~~~~~~~~~i~I~~l~d  317 (323)
T KOG1036|consen  253 ---DGIVNIWDLFNRKR--LKQLAKYETSISSLSFSMDGSLLAIASSYQYERADTPTHERNAIFIRDLTD  317 (323)
T ss_pred             ---CceEEEccCcchhh--hhhccCCCCceEEEEeccCCCeEEEEechhhhcCCCCCCCCCceEEEeccc
Confidence               77899999987664  77777666667899999999999998753211     11223466666544

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.55  E-value=9.4e-05  Score=74.68  Aligned_cols=233  Identities=20%  Similarity=0.181  Sum_probs=137.0

Q ss_pred             cCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCC-ceeCcCCCEEEEEeCCcEEEEECCCCce
Q 004971          373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSF-PSFSPKGDRIAFVEFPGVYVVNSDGSNR  451 (721)
Q Consensus       373 ~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~SpDG~~la~~~~~~l~v~d~~~g~~  451 (721)
                      .++.|.++...|+++...+.        +++.++...+.......+..... .....+|  .+++....+++++.+.+..
T Consensus        28 EgP~w~~~~~~L~w~DI~~~--------~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g--~Lv~~~~g~~~~~~~~~~~   97 (307)
T COG3386          28 EGPVWDPDRGALLWVDILGG--------RIHRLDPETGKKRVFPSPGGFSSGALIDAGG--RLIACEHGVRLLDPDTGGK   97 (307)
T ss_pred             cCccCcCCCCEEEEEeCCCC--------eEEEecCCcCceEEEECCCCcccceeecCCC--eEEEEccccEEEeccCCce
Confidence            46889999999988655543        56666665443333333222222 2334433  3334466778888776665


Q ss_pred             -EEEe-------ecCceeeEEcCCCCeEEEEecC---CCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc
Q 004971          452 -RQVY-------FKNAFSTVWDPVREAVVYTSGG---PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP  520 (721)
Q Consensus       452 -~~l~-------~~~~~~~~~spdg~~la~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp  520 (721)
                       +.+.       ..........|||+.. |...+   .........-.||+++..+.    ..+.+..+-.....++|||
T Consensus        98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~w-fgt~~~~~~~~~~~~~~G~lyr~~p~g~----~~~l~~~~~~~~NGla~Sp  172 (307)
T COG3386          98 ITLLAEPEDGLPLNRPNDGVVDPDGRIW-FGDMGYFDLGKSEERPTGSLYRVDPDGG----VVRLLDDDLTIPNGLAFSP  172 (307)
T ss_pred             eEEeccccCCCCcCCCCceeEcCCCCEE-EeCCCccccCccccCCcceEEEEcCCCC----EEEeecCcEEecCceEECC
Confidence             4444       1234467888998654 44443   12222333448999996543    4444444345677899999


Q ss_pred             CCCEEEEEEeeCCceeEEEEECCC--Cccc---ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971          521 DGKWIVFRSTRTGYKNLYIMDAEG--GEGY---GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       521 Dg~~l~~~s~~~g~~~l~~~d~~~--g~~~---~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      ||+.|+++...  ...|++++.+.  +...   .........+....++...||..-+....      +...|-+++.++
T Consensus       173 Dg~tly~aDT~--~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~------~g~~v~~~~pdG  244 (307)
T COG3386         173 DGKTLYVADTP--ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW------GGGRVVRFNPDG  244 (307)
T ss_pred             CCCEEEEEeCC--CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc------CCceEEEECCCC
Confidence            99999988753  46788887752  2211   11222223344456677777774332222      224799999984


Q ss_pred             CceEEeeecCCCCCcCCeEE-CCCCCEEEEEEecCC
Q 004971          596 TGLRKLIQSGSAGRANHPYF-SPDGKSIVFTSDYGG  630 (721)
Q Consensus       596 ~~~~~l~~~~~~~~~~~~~~-SpDG~~l~~~~~~~~  630 (721)
                       +....... .......++| .|+.+.|++++.+.+
T Consensus       245 -~l~~~i~l-P~~~~t~~~FgG~~~~~L~iTs~~~~  278 (307)
T COG3386         245 -KLLGEIKL-PVKRPTNPAFGGPDLNTLYITSARSG  278 (307)
T ss_pred             -cEEEEEEC-CCCCCccceEeCCCcCEEEEEecCCC
Confidence             44433332 2255666666 678899998888774

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.54  E-value=3.6e-06  Score=82.86  Aligned_cols=239  Identities=11%  Similarity=0.064  Sum_probs=142.4

Q ss_pred             CCCEEEEEEecCCCCeeeEEEEEC-CCCce-EEeecccCCCCcccCcEEcCCCCEEEE-EEeeCCCCCCCCcceeEEEec
Q 004971          331 NNKFIAVATRRPTSSYRHIELFDL-VKNKF-IELTRFVSPKTHHLNPFISPDSSRVGY-HKCRGGSTREDGNNQLLLENI  407 (721)
Q Consensus       331 dG~~la~~~~~~g~~~~~l~l~dl-~tg~~-~~l~~~~~~~~~~~~~~~Spdg~~l~~-~~~~~~~~~~~~~~~l~~~~~  407 (721)
                      +.++|++.....|+.  .+.+.-+ ++|+. .......+|.+.+...+|.|-...++. .+++..       ..+|...-
T Consensus        43 NPkfiAvi~easgGg--af~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~-------v~vW~IPe  113 (472)
T KOG0303|consen   43 NPKFVAVIIEASGGG--AFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTK-------VMVWQIPE  113 (472)
T ss_pred             CCceEEEEEecCCCc--ceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCce-------EEEEECCC
Confidence            558888866554432  2333333 34432 122333556777888999996655444 333333       22333221


Q ss_pred             cCC-------CCcceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCce-EEEe-ecCceeeEEcCCCCeEEEEec
Q 004971          408 KSP-------LPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNR-RQVY-FKNAFSTVWDPVREAVVYTSG  476 (721)
Q Consensus       408 ~~~-------~~~~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~-~~l~-~~~~~~~~~spdg~~la~~~~  476 (721)
                      .+-       ...+......+..++|+|--..+...  .+..+.+|++.+|+. ..|. +..+.++.|+-||..|+.++ 
T Consensus       114 ~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~Ttc-  192 (472)
T KOG0303|consen  114 NGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTC-  192 (472)
T ss_pred             cccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeec-
Confidence            111       11122222233456888876554444  488999999999884 4444 67889999999999999987 


Q ss_pred             CCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc-cceEECc
Q 004971          477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG-YGLHRLT  554 (721)
Q Consensus       477 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~-~~~~~l~  554 (721)
                            .+.+++||+...+.     .+..-..+. .......|-.+|+.+-..-.+....++-+||...-+. .....|.
T Consensus       193 ------kDKkvRv~dpr~~~-----~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD  261 (472)
T KOG0303|consen  193 ------KDKKVRVIDPRRGT-----VVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD  261 (472)
T ss_pred             ------ccceeEEEcCCCCc-----EeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec
Confidence                  57889999876543     222222333 4556678999999333333445677999999875432 1123333


Q ss_pred             CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971          555 EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG  597 (721)
Q Consensus       555 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~  597 (721)
                      ... .+-.|-|.||.+.||.+...      ...|..|.+....
T Consensus       262 tSn-Gvl~PFyD~dt~ivYl~GKG------D~~IRYyEit~d~  297 (472)
T KOG0303|consen  262 TSN-GVLLPFYDPDTSIVYLCGKG------DSSIRYFEITNEP  297 (472)
T ss_pred             cCC-ceEEeeecCCCCEEEEEecC------CcceEEEEecCCC
Confidence            333 34678899998877766643      2467777765544

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.53  E-value=8.3e-05  Score=80.12  Aligned_cols=250  Identities=13%  Similarity=0.019  Sum_probs=136.5

Q ss_pred             eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEE
Q 004971          326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLE  405 (721)
Q Consensus       326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~  405 (721)
                      =++| ||+.+...    ......+.++|.++.+...-...   ........++|||+++++++......     ..+...
T Consensus       199 Plpn-DGk~l~~~----~ey~~~vSvID~etmeV~~qV~V---dgnpd~v~~spdGk~afvTsyNsE~G-----~tl~em  265 (635)
T PRK02888        199 PLPN-DGKDLDDP----KKYRSLFTAVDAETMEVAWQVMV---DGNLDNVDTDYDGKYAFSTCYNSEEG-----VTLAEM  265 (635)
T ss_pred             ccCC-CCCEeecc----cceeEEEEEEECccceEEEEEEe---CCCcccceECCCCCEEEEeccCcccC-----cceeee
Confidence            3577 88866332    23445577889887653221111   33556789999999999876432211     122222


Q ss_pred             eccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCC----C-c-eEEEe-ecCceeeEEcCCCCeEEEEecCC
Q 004971          406 NIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDG----S-N-RRQVY-FKNAFSTVWDPVREAVVYTSGGP  478 (721)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~----g-~-~~~l~-~~~~~~~~~spdg~~la~~~~~~  478 (721)
                      +..... .+..+.. ....++.+||++..+ ..+.+.++|..+    + + ...|. ...+..+.+||||+++++...  
T Consensus       266 ~a~e~d-~~vvfni-~~iea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank--  340 (635)
T PRK02888        266 MAAERD-WVVVFNI-ARIEEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK--  340 (635)
T ss_pred             ccccCc-eEEEEch-HHHHHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC--
Confidence            221111 1111111 011256778986554 567799999887    3 2 23344 567788999999999999863  


Q ss_pred             CCCCCCCcEEEEEEEccCC-----CC--ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCC------C
Q 004971          479 EFASESSEVDIISINVDDV-----DG--VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG------G  545 (721)
Q Consensus       479 ~~~~~~~~~~i~~~~~~~~-----~~--~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~------g  545 (721)
                          ..+.+.|+++.....     -.  .....++.- +....+.+|.++|+......-   +.+|..|+++.      |
T Consensus       341 ----lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~---dsqv~kwn~~~a~~~~~g  412 (635)
T PRK02888        341 ----LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFL---DSQIVKWNIEAAIRAYKG  412 (635)
T ss_pred             ----CCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEee---cceeEEEehHHHHHHhcc
Confidence                467778877754220     00  001112222 234567799999873333333   67899999875      2


Q ss_pred             cc--cceEECcCCCcCceeeE------EccCCCEEEEEEccCC----C--CCCceeEEEEecCCCceEEee
Q 004971          546 EG--YGLHRLTEGPWSDTMCN------WSPDGEWIAFASDRDN----P--GSGSFEMYLIHPNGTGLRKLI  602 (721)
Q Consensus       546 ~~--~~~~~l~~~~~~~~~~~------~SpDG~~l~~~~~~~~----~--~~~~~~i~~~d~~~~~~~~l~  602 (721)
                      +.  ..+.++.-+ +...++.      -.|||+||+....-..    +  +-....-.++|+.+.+.+.+.
T Consensus       413 ~~~~~v~~k~dV~-y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv~  482 (635)
T PRK02888        413 EKVDPIVQKLDVH-YQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLVH  482 (635)
T ss_pred             ccCCcceecccCC-CccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEEe
Confidence            11  112223221 1112222      3799999986543110    0  112344567788776665554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.53  E-value=0.00047  Score=80.55  Aligned_cols=346  Identities=11%  Similarity=0.075  Sum_probs=172.1

Q ss_pred             cCCEEEEEecCCCCCCCCCccceEEEE----eCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeee
Q 004971          175 SGEYLIYVSTHENPGTPRTSWAAVYST----ELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTD  250 (721)
Q Consensus       175 dg~~l~~~~~~~~~~~~~~~~~~l~~v----~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~  250 (721)
                      |...+.++...|          .|..+    +.......-+..-.......+||||+..||+++..            ..
T Consensus        86 d~~~l~~~~~~G----------di~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~------------~~  143 (928)
T PF04762_consen   86 DSESLCIALASG----------DIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGE------------GN  143 (928)
T ss_pred             CCCcEEEEECCc----------eEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCC------------CE
Confidence            666677766553          77777    66666666665555555666999999999998633            35


Q ss_pred             EEEEEcCCCc--eeEEEecc-CC----cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCccc
Q 004971          251 IYIFLTRDGT--QRVKIVEN-GG----WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAF  323 (721)
Q Consensus       251 i~~~d~~~g~--~~~l~~~~-~~----~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (721)
                      |.++..+=..  +..+.... +.    ...|-...+-+-.  +  .|...--....+.-.  .   .....+. ..-...
T Consensus       144 l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~G--s--~gK~aa~~~~~p~~~--~---~d~~~~s-~dd~~~  213 (928)
T PF04762_consen  144 LLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHG--S--AGKAAARQLRDPTVP--K---VDEGKLS-WDDGRV  213 (928)
T ss_pred             EEEEeccceEEEEeecCccccCCCceeeeccCcccCccCc--c--hhhhhhhhccCCCCC--c---cccCccc-cCCCce
Confidence            6666432111  11121111 11    1234432111110  0  000000000001000  0   0001111 111334


Q ss_pred             CceeecCCCCEEEEEEecCCCC-eeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCccee
Q 004971          324 TPATSPGNNKFIAVATRRPTSS-YRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQL  402 (721)
Q Consensus       324 ~~~~sp~dG~~la~~~~~~g~~-~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l  402 (721)
                      .++|-. ||+++|...-..... .+.|++|+-+ |+.....  +...+-...++|-|.|..|+........      ..+
T Consensus       214 ~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS--E~v~gLe~~l~WrPsG~lIA~~q~~~~~------~~V  283 (928)
T PF04762_consen  214 RISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS--EPVDGLEGALSWRPSGNLIASSQRLPDR------HDV  283 (928)
T ss_pred             EEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc--ccCCCccCCccCCCCCCEEEEEEEcCCC------cEE
Confidence            678888 999998876533333 6789999976 5533332  2223445578999999999987653332      222


Q ss_pred             EEEeccCCCC-ccee----cccCCCCceeCcCCCEEEEEeCCcEEEEECCCCc---eEEEe---ecCceeeEEcCCC-Ce
Q 004971          403 LLENIKSPLP-DISL----FRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSN---RRQVY---FKNAFSTVWDPVR-EA  470 (721)
Q Consensus       403 ~~~~~~~~~~-~~~~----~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~---~~~l~---~~~~~~~~~spdg-~~  470 (721)
                      .+..-.+-.. .+..    .......+.|++|+..||+.-...|.+|....-.   .+.+.   ......+.|+|.. .+
T Consensus       284 vFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~  363 (928)
T PF04762_consen  284 VFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLR  363 (928)
T ss_pred             EEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCE
Confidence            2222111100 1111    1123456899999999999876668888766544   12232   2233458999954 44


Q ss_pred             EEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccc-
Q 004971          471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG-  549 (721)
Q Consensus       471 la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~-  549 (721)
                      |.+.+       ..+.+..+.+....       ..-............--||+.|            .+-++...-..+ 
T Consensus       364 L~v~t-------~~g~~~~~~~~~~v-------~~s~~~~~~D~g~vaVIDG~~l------------llTpf~~a~VPPP  417 (928)
T PF04762_consen  364 LHVLT-------SNGQYEIYDFAWDV-------SRSPGSSPNDNGTVAVIDGNKL------------LLTPFRRAVVPPP  417 (928)
T ss_pred             EEEEe-------cCCcEEEEEEEEEE-------EecCCCCccCceEEEEEeCCeE------------EEecccccCCCch
Confidence            55554       23555555544311       1100111112222333344444            443333222100 


Q ss_pred             --eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971          550 --LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN  594 (721)
Q Consensus       550 --~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~  594 (721)
                        ...+. -+..+..++|++++..+++...++     .-.+|.++..
T Consensus       418 Ms~~~l~-~~~~v~~vaf~~~~~~~avl~~d~-----~l~~~~~~~~  458 (928)
T PF04762_consen  418 MSSYELE-LPSPVNDVAFSPSNSRFAVLTSDG-----SLSIYEWDLK  458 (928)
T ss_pred             HhceEEc-CCCCcEEEEEeCCCCeEEEEECCC-----CEEEEEecCC
Confidence              01121 134568899999998777766653     2345555443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.52  E-value=0.00013  Score=79.58  Aligned_cols=154  Identities=12%  Similarity=0.033  Sum_probs=107.9

Q ss_pred             CCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971          422 SFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV  494 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~  494 (721)
                      ..+..++.|...+.+-...+++|....+......       .......++||.++.++..-       .++++.+|+--.
T Consensus       164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d-------~dGrI~vw~d~~  236 (792)
T KOG1963|consen  164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGD-------SDGRILVWRDFG  236 (792)
T ss_pred             ccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEec-------cCCcEEEEeccc
Confidence            4467788887777777888999988765522211       12356689999999999874       467888886432


Q ss_pred             cCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEE
Q 004971          495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF  574 (721)
Q Consensus       495 ~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~  574 (721)
                      ... .....+.+.=+...+..++||+||.+|+.+..   ..-|.+|.+++++   .+-|+.-...+.++.+|||+...+.
T Consensus       237 ~~~-~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~---E~VLv~Wq~~T~~---kqfLPRLgs~I~~i~vS~ds~~~sl  309 (792)
T KOG1963|consen  237 SSD-DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR---EGVLVLWQLETGK---KQFLPRLGSPILHIVVSPDSDLYSL  309 (792)
T ss_pred             ccc-ccccceEEEecccccceeEEecCCceEeeccc---ceEEEEEeecCCC---cccccccCCeeEEEEEcCCCCeEEE
Confidence            111 11123333334457788999999999998876   6789999999988   4556655666789999999998887


Q ss_pred             EEccCCCCCCceeEEEEecCCC
Q 004971          575 ASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       575 ~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                      ...+.       +|.+..+.+-
T Consensus       310 ~~~DN-------qI~li~~~dl  324 (792)
T KOG1963|consen  310 VLEDN-------QIHLIKASDL  324 (792)
T ss_pred             EecCc-------eEEEEeccch
Confidence            77764       6777666443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=98.52  E-value=2.5e-05  Score=78.63  Aligned_cols=193  Identities=11%  Similarity=0.196  Sum_probs=130.9

Q ss_pred             CCCCceeCcCCCEEEE-E-eCCcEEEEECCCCce-------EEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcE
Q 004971          420 DGSFPSFSPKGDRIAF-V-EFPGVYVVNSDGSNR-------RQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEV  487 (721)
Q Consensus       420 ~~~~~~~SpDG~~la~-~-~~~~l~v~d~~~g~~-------~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  487 (721)
                      .+..+.|++.-.-... . .+..+.+||+.....       +.++   ...+..++|.+-...|+...      .+++.+
T Consensus       179 eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv------~dd~~L  252 (422)
T KOG0264|consen  179 EGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV------GDDGKL  252 (422)
T ss_pred             cccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee------cCCCeE
Confidence            3566788876543222 2 588999999864322       2233   44677899999777666554      367899


Q ss_pred             EEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEcc
Q 004971          488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP  567 (721)
Q Consensus       488 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~Sp  567 (721)
                      .||+......   ........+...+..++|.|=+.+|+.+...  +.+|.+||+.+-.. .+..+..+...+..+.|||
T Consensus       253 ~iwD~R~~~~---~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~--D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSP  326 (422)
T KOG0264|consen  253 MIWDTRSNTS---KPSHSVKAHSAEVNCVAFNPFNEFILATGSA--DKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSP  326 (422)
T ss_pred             EEEEcCCCCC---CCcccccccCCceeEEEeCCCCCceEEeccC--CCcEEEeechhccc-CceeccCCCcceEEEEeCC
Confidence            9999886321   1334455566788889999977766655432  67899999986542 3556667777789999999


Q ss_pred             CCCEEEEEEccCCCCCCceeEEEEecCCCceEE------------ee-ecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK------------LI-QSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       568 DG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~------------l~-~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      +-..|+.++...      ..+.+||+..-...+            ++ ..+|...+..+.|.|..-+++.+..+++
T Consensus       327 h~etvLASSg~D------~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN  396 (422)
T KOG0264|consen  327 HNETVLASSGTD------RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN  396 (422)
T ss_pred             CCCceeEecccC------CcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCc
Confidence            987776665532      378889985422221            22 2245567788999999999887776664

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.52  E-value=6.3e-06  Score=82.87  Aligned_cols=290  Identities=13%  Similarity=-0.020  Sum_probs=165.6

Q ss_pred             CCCcccCcEEcCCCCEEEEEEeeCCCCCCCC---cceeEEEec----cCCCCcce----ecccCCCCceeCcCCCEEEEE
Q 004971          368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDG---NNQLLLENI----KSPLPDIS----LFRFDGSFPSFSPKGDRIAFV  436 (721)
Q Consensus       368 ~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~---~~~l~~~~~----~~~~~~~~----~~~~~~~~~~~SpDG~~la~~  436 (721)
                      |...+.+++++||+++++.++.++....|..   ...-+++.-    ...-..+.    ......-.+++|+||++|++.
T Consensus       141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatg  220 (479)
T KOG0299|consen  141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATG  220 (479)
T ss_pred             ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEec
Confidence            4455667888888888876655443221110   000011111    00100000    111122246899999999999


Q ss_pred             e-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCC
Q 004971          437 E-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKN  512 (721)
Q Consensus       437 ~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~  512 (721)
                      + +..+.+|+.++.+....+   .+.+...+|-..-..|+.++       .+..+.+|.++..+     -+..+-.+...
T Consensus       221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s-------~Drsvkvw~~~~~s-----~vetlyGHqd~  288 (479)
T KOG0299|consen  221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSAS-------ADRSVKVWSIDQLS-----YVETLYGHQDG  288 (479)
T ss_pred             CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeee-------cCCceEEEehhHhH-----HHHHHhCCccc
Confidence            6 566779999999877664   45677888877777777776       57889999988644     34455555555


Q ss_pred             CcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEE
Q 004971          513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI  591 (721)
Q Consensus       513 ~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~  591 (721)
                      +..+....-++ ++.+..+  +..+.+|++.. +   .+.+. .+...+..++|-. ..+++.++.++       .|++|
T Consensus       289 v~~IdaL~reR-~vtVGgr--DrT~rlwKi~e-e---sqlifrg~~~sidcv~~In-~~HfvsGSdnG-------~IaLW  353 (479)
T KOG0299|consen  289 VLGIDALSRER-CVTVGGR--DRTVRLWKIPE-E---SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNG-------SIALW  353 (479)
T ss_pred             eeeechhcccc-eEEeccc--cceeEEEeccc-c---ceeeeeCCCCCeeeEEEec-ccceeeccCCc-------eEEEe
Confidence            55554444444 4455444  56677777742 2   22222 2334455667764 45778888775       89999


Q ss_pred             ecCCCceEEeeecCCC-----------CCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC--Ce
Q 004971          592 HPNGTGLRKLIQSGSA-----------GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS--DL  658 (721)
Q Consensus       592 d~~~~~~~~l~~~~~~-----------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~  658 (721)
                      ++...++.-+....|.           ..+.+++..|....++..+.++.                 |.+|-...+  ..
T Consensus       354 s~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-----------------vrLW~i~~g~r~i  416 (479)
T KOG0299|consen  354 SLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-----------------VRLWKIEDGLRAI  416 (479)
T ss_pred             eecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-----------------eEEEEecCCcccc
Confidence            9988876544433221           14456677776666665555443                 555555544  33


Q ss_pred             EEecc--CCCCCCCceecCCc--CCccccccccccccccccccceeeccCCCCc
Q 004971          659 KRLTQ--NSFEDGTPAWGPRF--IRPVDVEEVKNEQCAFEDCHWLNETPNQRDW  708 (721)
Q Consensus       659 ~~lt~--~~~~~~~~~~sp~~--l~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~  708 (721)
                      ..|..  ..+.+...+|+++.  +..+-       --..+...|........-+
T Consensus       417 ~~l~~ls~~GfVNsl~f~~sgk~ivagi-------GkEhRlGRW~~~k~~~~~~  463 (479)
T KOG0299|consen  417 NLLYSLSLVGFVNSLAFSNSGKRIVAGI-------GKEHRLGRWWCLKSGKNSG  463 (479)
T ss_pred             ceeeecccccEEEEEEEccCCCEEEEec-------ccccccceeeEeecccccc
Confidence            34433  23456677777752  22221       1123345677776655544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.50  E-value=5.5e-06  Score=81.62  Aligned_cols=151  Identities=17%  Similarity=0.246  Sum_probs=110.8

Q ss_pred             ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC--CccceEEcccCCCCCcceEEccCCCEEEEEEeeCC
Q 004971          456 FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD--GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG  533 (721)
Q Consensus       456 ~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g  533 (721)
                      .+.+.++.|.|-...++...      .++.++.||.+..++..  -...+..|..|...+..++|+|--.-+++++.  +
T Consensus        81 t~~vLDi~w~PfnD~vIASg------SeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag--~  152 (472)
T KOG0303|consen   81 TAPVLDIDWCPFNDCVIASG------SEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG--S  152 (472)
T ss_pred             cccccccccCccCCceeecC------CCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc--C
Confidence            45678899999665554443      36889999999876531  11245567777778888999998776665543  2


Q ss_pred             ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCC-CcCC
Q 004971          534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG-RANH  612 (721)
Q Consensus       534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~-~~~~  612 (721)
                      +..+.+|++.+|+.  +..+. ++..+.++.|+-||.+|+.+..+.       .|.+||..+++....-. .|.+ ....
T Consensus       153 Dn~v~iWnv~tgea--li~l~-hpd~i~S~sfn~dGs~l~TtckDK-------kvRv~dpr~~~~v~e~~-~heG~k~~R  221 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEA--LITLD-HPDMVYSMSFNRDGSLLCTTCKDK-------KVRVIDPRRGTVVSEGV-AHEGAKPAR  221 (472)
T ss_pred             CceEEEEeccCCce--eeecC-CCCeEEEEEeccCCceeeeecccc-------eeEEEcCCCCcEeeecc-cccCCCcce
Confidence            78999999999986  55666 777788999999999999988875       89999999987665542 2433 3456


Q ss_pred             eEECCCCCEEEEEE
Q 004971          613 PYFSPDGKSIVFTS  626 (721)
Q Consensus       613 ~~~SpDG~~l~~~~  626 (721)
                      ..|-.+|+ |+.+.
T Consensus       222 aifl~~g~-i~tTG  234 (472)
T KOG0303|consen  222 AIFLASGK-IFTTG  234 (472)
T ss_pred             eEEeccCc-eeeec
Confidence            77888999 44443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.49  E-value=7.7e-07  Score=86.54  Aligned_cols=210  Identities=11%  Similarity=0.080  Sum_probs=130.0

Q ss_pred             CCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc
Q 004971          422 SFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV  500 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~  500 (721)
                      ..+.++. +..+....+..|..|.+++.....+. ......+.-..-+..+         ......+.||+...+.    
T Consensus       113 ~Gi~v~~-~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~F---------aTcGe~i~IWD~~R~~----  178 (433)
T KOG0268|consen  113 RGICVTQ-TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVF---------ATCGEQIDIWDEQRDN----  178 (433)
T ss_pred             eeEEecc-cceEEecCCcceeeeeccCCcceeeeccccccccccccccccc---------cccCceeeecccccCC----
Confidence            3445554 33344445778888887775333333 2222222222222222         2234679999987654    


Q ss_pred             cceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCC
Q 004971          501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN  580 (721)
Q Consensus       501 ~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~  580 (721)
                       .+..++-+......+.|+|-...|+.....  +..|+++|+..+.+  ++.+... ...+.++|+|.+--++.+..+  
T Consensus       179 -Pv~smswG~Dti~svkfNpvETsILas~~s--DrsIvLyD~R~~~P--l~KVi~~-mRTN~IswnPeafnF~~a~ED--  250 (433)
T KOG0268|consen  179 -PVSSMSWGADSISSVKFNPVETSILASCAS--DRSIVLYDLRQASP--LKKVILT-MRTNTICWNPEAFNFVAANED--  250 (433)
T ss_pred             -ccceeecCCCceeEEecCCCcchheeeecc--CCceEEEecccCCc--cceeeee-ccccceecCccccceeecccc--
Confidence             455555544566778999988877766533  67899999998886  5544432 223679999944333333333  


Q ss_pred             CCCCceeEEEEecCCCc-eEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971          581 PGSGSFEMYLIHPNGTG-LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK  659 (721)
Q Consensus       581 ~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  659 (721)
                           ..||.+|+..-+ +..+.. ++...+.++.|||-|+.++..+.+..                 |.++....+..+
T Consensus       251 -----~nlY~~DmR~l~~p~~v~~-dhvsAV~dVdfsptG~EfvsgsyDks-----------------IRIf~~~~~~SR  307 (433)
T KOG0268|consen  251 -----HNLYTYDMRNLSRPLNVHK-DHVSAVMDVDFSPTGQEFVSGSYDKS-----------------IRIFPVNHGHSR  307 (433)
T ss_pred             -----ccceehhhhhhcccchhhc-ccceeEEEeccCCCcchhccccccce-----------------EEEeecCCCcch
Confidence                 489999986532 222322 25556778999999999999998875                 777777777777


Q ss_pred             EeccCC--CCCCCceecCC
Q 004971          660 RLTQNS--FEDGTPAWGPR  676 (721)
Q Consensus       660 ~lt~~~--~~~~~~~~sp~  676 (721)
                      .+....  ..+....||-+
T Consensus       308 diYhtkRMq~V~~Vk~S~D  326 (433)
T KOG0268|consen  308 DIYHTKRMQHVFCVKYSMD  326 (433)
T ss_pred             hhhhHhhhheeeEEEEecc
Confidence            666432  23566788876

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.48  E-value=0.00011  Score=79.23  Aligned_cols=141  Identities=16%  Similarity=0.142  Sum_probs=79.4

Q ss_pred             CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc----------cceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971          510 GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG----------YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD  579 (721)
Q Consensus       510 ~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~----------~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~  579 (721)
                      +.....+.+||||+++++.+..  ...+-++|+++.+.          ....++.-+.+ ..+.+|+++|.  +|++.- 
T Consensus       320 GKsPHGV~vSPDGkylyVankl--S~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~--aytslf-  393 (635)
T PRK02888        320 PKNPHGVNTSPDGKYFIANGKL--SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGN--AYTTLF-  393 (635)
T ss_pred             CCCccceEECCCCCEEEEeCCC--CCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCC--EEEeEe-
Confidence            3477889999999999988764  45788888876431          01222222222 24678999987  343332 


Q ss_pred             CCCCCceeEEEEecCC------C-ceEEeee-cCCCCCcCC------eEECCCCCEEEEEEecCCCcCCCCCCCCCCCCC
Q 004971          580 NPGSGSFEMYLIHPNG------T-GLRKLIQ-SGSAGRANH------PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY  645 (721)
Q Consensus       580 ~~~~~~~~i~~~d~~~------~-~~~~l~~-~~~~~~~~~------~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~  645 (721)
                          -..+|-.|+++.      | +...+.. ..-.....+      -.-.|||+||+....-+..++-+ .+|.+   +
T Consensus       394 ----~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~-vgpl~---p  465 (635)
T PRK02888        394 ----LDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLP-VGPLH---P  465 (635)
T ss_pred             ----ecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccC-CCCCC---C
Confidence                124899999875      1 1112221 001111222      23489999998766544322111 11111   1


Q ss_pred             ccEEEEEcCCCCeEEeccC
Q 004971          646 GEIFKIKLDGSDLKRLTQN  664 (721)
Q Consensus       646 ~~l~~~d~~~~~~~~lt~~  664 (721)
                      ..-.++|+.|.+++.|.++
T Consensus       466 en~qlidIsgdkM~lv~d~  484 (635)
T PRK02888        466 ENDQLIDISGDKMKLVHDG  484 (635)
T ss_pred             CcceeEEccCCeeEEEecC
Confidence            1234568888888888764

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=9.7e-07  Score=98.20  Aligned_cols=234  Identities=12%  Similarity=0.051  Sum_probs=149.8

Q ss_pred             CcccCcEEcCCCCE----EEEEEeeCCCCCCCCcceeEEEec--cCCC----CcceecccCCCCceeCcCCC-EEEEE-e
Q 004971          370 THHLNPFISPDSSR----VGYHKCRGGSTREDGNNQLLLENI--KSPL----PDISLFRFDGSFPSFSPKGD-RIAFV-E  437 (721)
Q Consensus       370 ~~~~~~~~Spdg~~----l~~~~~~~~~~~~~~~~~l~~~~~--~~~~----~~~~~~~~~~~~~~~SpDG~-~la~~-~  437 (721)
                      .....++|++.|..    |+-..+++.       ..+|..+-  ....    .....+.+.+..+.|++.+. .||.. +
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~-------I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~  137 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGN-------IVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGAD  137 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCc-------eEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCC
Confidence            34556899988877    443333333       23332221  1111    11222334455688998877 56665 5


Q ss_pred             CCcEEEEECCCCce-EEE----eecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC--
Q 004971          438 FPGVYVVNSDGSNR-RQV----YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG--  510 (721)
Q Consensus       438 ~~~l~v~d~~~g~~-~~l----~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~--  510 (721)
                      +++|++||+..-+. -..    ....+..++|...-.+|+...      ...+...||++..+.     .+..+..+.  
T Consensus       138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~------s~sg~~~iWDlr~~~-----pii~ls~~~~~  206 (1049)
T KOG0307|consen  138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASG------SPSGRAVIWDLRKKK-----PIIKLSDTPGR  206 (1049)
T ss_pred             CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhcc------CCCCCceeccccCCC-----cccccccCCCc
Confidence            89999999976331 111    145678889987766665544      246789999998764     455555554  


Q ss_pred             CCCcceEEccCCC-EEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEE
Q 004971          511 KNNAFPSVSPDGK-WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY  589 (721)
Q Consensus       511 ~~~~~~~~SpDg~-~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~  589 (721)
                      .....++|+||+. +|+++++.+....|-+||+.--.. .++.+..|...+..+.|++.+..+++++...      .+|+
T Consensus       207 ~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass-P~k~~~~H~~GilslsWc~~D~~lllSsgkD------~~ii  279 (1049)
T KOG0307|consen  207 MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS-PLKILEGHQRGILSLSWCPQDPRLLLSSGKD------NRII  279 (1049)
T ss_pred             cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC-chhhhcccccceeeeccCCCCchhhhcccCC------CCee
Confidence            2356789999876 566677766777899999764331 2455566777788999999886666666543      3899


Q ss_pred             EEecCCCceEEeeecCCCCCcCCeEECCCCC-EEEEEEecC
Q 004971          590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGK-SIVFTSDYG  629 (721)
Q Consensus       590 ~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~-~l~~~~~~~  629 (721)
                      .|+..+++..--... .......+.|.|..- .++.++.++
T Consensus       280 ~wN~~tgEvl~~~p~-~~nW~fdv~w~pr~P~~~A~asfdg  319 (1049)
T KOG0307|consen  280 CWNPNTGEVLGELPA-QGNWCFDVQWCPRNPSVMAAASFDG  319 (1049)
T ss_pred             EecCCCceEeeecCC-CCcceeeeeecCCCcchhhhheecc
Confidence            999999876543332 345677899999775 445555544

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=98.47  E-value=2.5e-05  Score=78.64  Aligned_cols=248  Identities=11%  Similarity=0.082  Sum_probs=149.1

Q ss_pred             CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEe--------ecccCCCCcccCcEEcCCCCEEEEEE
Q 004971          317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIEL--------TRFVSPKTHHLNPFISPDSSRVGYHK  388 (721)
Q Consensus       317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l--------~~~~~~~~~~~~~~~Spdg~~l~~~~  388 (721)
                      .+...+..+..-| -...|+....    ....+++||......+..        ..+.+|.....++.|++...-.....
T Consensus       122 ~h~gEVnRaRymP-Qnp~iVAt~t----~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~  196 (422)
T KOG0264|consen  122 NHDGEVNRARYMP-QNPNIVATKT----SSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG  196 (422)
T ss_pred             cCCccchhhhhCC-CCCcEEEecC----CCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence            3344455555556 5444443221    233478888764321111        12233444455688888765433322


Q ss_pred             eeCCCCCCCCcceeEEEeccCCCC------cceec---ccCCCCceeCcCCCEE-EEE-eCCcEEEEECCCC--ceEEEe
Q 004971          389 CRGGSTREDGNNQLLLENIKSPLP------DISLF---RFDGSFPSFSPKGDRI-AFV-EFPGVYVVNSDGS--NRRQVY  455 (721)
Q Consensus       389 ~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~---~~~~~~~~~SpDG~~l-a~~-~~~~l~v~d~~~g--~~~~l~  455 (721)
                      ...        ..+.++++.....      ....+   ...+...+|++-...+ +++ .++.|.+||+.++  +.....
T Consensus       197 ~~d--------~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~  268 (422)
T KOG0264|consen  197 SDD--------HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV  268 (422)
T ss_pred             cCC--------CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc
Confidence            222        2356666543211      11111   1223456787755443 334 4788999999853  222222


Q ss_pred             ---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC
Q 004971          456 ---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT  532 (721)
Q Consensus       456 ---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~  532 (721)
                         .+.+..++|+|-+..|+.+.      ..++.+.||++.--..    .+..+..+...+..+.|||....++..+.. 
T Consensus       269 ~ah~~~vn~~~fnp~~~~ilAT~------S~D~tV~LwDlRnL~~----~lh~~e~H~dev~~V~WSPh~etvLASSg~-  337 (422)
T KOG0264|consen  269 KAHSAEVNCVAFNPFNEFILATG------SADKTVALWDLRNLNK----PLHTFEGHEDEVFQVEWSPHNETVLASSGT-  337 (422)
T ss_pred             cccCCceeEEEeCCCCCceEEec------cCCCcEEEeechhccc----CceeccCCCcceEEEEeCCCCCceeEeccc-
Confidence               56788999999887777665      3689999998864443    667778888889999999999988877654 


Q ss_pred             CceeEEEEECCCCcc---------cceEECc---CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971          533 GYKNLYIMDAEGGEG---------YGLHRLT---EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       533 g~~~l~~~d~~~g~~---------~~~~~l~---~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                       +.++.+||+..-..         .++..+.   .+...+..+.|.|...|++.+..+.      ..|.+|.+..
T Consensus       338 -D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD------N~LqIW~~s~  405 (422)
T KOG0264|consen  338 -DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED------NILQIWQMAE  405 (422)
T ss_pred             -CCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC------ceEEEeeccc
Confidence             66788888753211         1122222   2344578899999999988887764      3677787753

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.47  E-value=9.4e-06  Score=82.99  Aligned_cols=173  Identities=12%  Similarity=0.065  Sum_probs=115.4

Q ss_pred             cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC--CcceecccCCCCceeCcCCCEEEEEeCCcEEE
Q 004971          366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL--PDISLFRFDGSFPSFSPKGDRIAFVEFPGVYV  443 (721)
Q Consensus       366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v  443 (721)
                      ..|.+.+....|+|||.-|+.+.+++-       ..+|..   ++.  ..+.+........+|.|+...++|+..+.+++
T Consensus       101 ~AH~~A~~~gRW~~dGtgLlt~GEDG~-------iKiWSr---sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~I  170 (737)
T KOG1524|consen  101 SAHAAAISSGRWSPDGAGLLTAGEDGV-------IKIWSR---SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISI  170 (737)
T ss_pred             hhhhhhhhhcccCCCCceeeeecCCce-------EEEEec---cchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEE
Confidence            345667778899999999998877776       445543   221  12233334456689999999999998889998


Q ss_pred             EECCCCc-eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc
Q 004971          444 VNSDGSN-RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP  520 (721)
Q Consensus       444 ~d~~~g~-~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp  520 (721)
                      -.+.-.. +.+-.  ++.+....|++....++...       ++-+..||+-.-.      .+..-..++..+.+.+|.|
T Consensus       171 KpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG-------ED~kfKvWD~~G~------~Lf~S~~~ey~ITSva~np  237 (737)
T KOG1524|consen  171 KPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG-------EDFRFKIWDAQGA------NLFTSAAEEYAITSVAFNP  237 (737)
T ss_pred             eecccccceeEEeccCcEEEEeecCccccceeecC-------CceeEEeecccCc------ccccCChhccceeeeeecc
Confidence            8875432 22222  77888999999999888764       5667778764321      2333334557788899999


Q ss_pred             CCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971          521 DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD  579 (721)
Q Consensus       521 Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~  579 (721)
                      | +-+++.+    ...+++=.             ...+.+..++|||||.+++.+...+
T Consensus       238 d-~~~~v~S----~nt~R~~~-------------p~~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  238 E-KDYLLWS----YNTARFSS-------------PRVGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             c-cceeeee----eeeeeecC-------------CCccceEEEEEcCCCceeeccccCc
Confidence            9 4333333    22232111             1234567899999999999887654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=98.46  E-value=3e-05  Score=73.65  Aligned_cols=218  Identities=14%  Similarity=0.113  Sum_probs=134.4

Q ss_pred             CCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe--ecCceeeEEcCCCC-e-EEEEecCCCCCCCCCcEEEEEEEcc
Q 004971          422 SFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVRE-A-VVYTSGGPEFASESSEVDIISINVD  495 (721)
Q Consensus       422 ~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~-~-la~~~~~~~~~~~~~~~~i~~~~~~  495 (721)
                      ..+.|-|-..-+...  .+..|.+||..+-+....+  ++.+..-+|||-.. . |+.+.      .++.++++.++...
T Consensus       105 ss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~g------tr~~~VrLCDi~SG  178 (397)
T KOG4283|consen  105 SSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAG------TRDVQVRLCDIASG  178 (397)
T ss_pred             eeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEe------cCCCcEEEEeccCC
Confidence            344555543333333  3778999999887655544  67788889998654 2 22222      35678888888765


Q ss_pred             CCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCC--Ccc-----------cceEECcCCCcCcee
Q 004971          496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG--GEG-----------YGLHRLTEGPWSDTM  562 (721)
Q Consensus       496 ~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~--g~~-----------~~~~~l~~~~~~~~~  562 (721)
                      .     ....|..+...+..+.|||...++++...-  +..|.+||+..  |-.           ..++.-+.+.+.++.
T Consensus       179 s-----~sH~LsGHr~~vlaV~Wsp~~e~vLatgsa--Dg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvng  251 (397)
T KOG4283|consen  179 S-----FSHTLSGHRDGVLAVEWSPSSEWVLATGSA--DGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNG  251 (397)
T ss_pred             c-----ceeeeccccCceEEEEeccCceeEEEecCC--CceEEEEEeecccceeEEeecccCccCccccccccccceeee
Confidence            4     667888888889999999999999887654  45677777642  210           001112233445688


Q ss_pred             eEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee--cCCCCCcCCeEE---CCCCCEEEEEEecCCCcCCCCC
Q 004971          563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ--SGSAGRANHPYF---SPDGKSIVFTSDYGGISAEPIS  637 (721)
Q Consensus       563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~~~~~~~~~~---SpDG~~l~~~~~~~~~~~~~~~  637 (721)
                      ++|+.||++++....+.       .+.+|+...|+-.....  ..+. .-.++++   +-+...+++.-+++        
T Consensus       252 la~tSd~~~l~~~gtd~-------r~r~wn~~~G~ntl~~~g~~~~n-~~~~~~~~~~~~~s~vfv~~p~~~--------  315 (397)
T KOG4283|consen  252 LAWTSDARYLASCGTDD-------RIRVWNMESGRNTLREFGPIIHN-QTTSFAVHIQSMDSDVFVLFPNDG--------  315 (397)
T ss_pred             eeecccchhhhhccCcc-------ceEEeecccCccccccccccccc-ccccceEEEeecccceEEEEecCC--------
Confidence            99999999999888875       89999998875332211  0011 0111211   33444444444332        


Q ss_pred             CCCCCCCCccEEEEEcCC-CCeEEeccCCCCCCCceecCCc
Q 004971          638 TPHQYQPYGEIFKIKLDG-SDLKRLTQNSFEDGTPAWGPRF  677 (721)
Q Consensus       638 ~~~~~~~~~~l~~~d~~~-~~~~~lt~~~~~~~~~~~sp~~  677 (721)
                               .|+++++-. ..++.+..+.......+|.|++
T Consensus       316 ---------~lall~~~sgs~ir~l~~h~k~i~c~~~~~~f  347 (397)
T KOG4283|consen  316 ---------SLALLNLLEGSFVRRLSTHLKRINCAAYRPDF  347 (397)
T ss_pred             ---------eEEEEEccCceEEEeeecccceeeEEeecCch
Confidence                     377777544 4566777665555566666754

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.45  E-value=5.2e-06  Score=86.87  Aligned_cols=196  Identities=15%  Similarity=0.045  Sum_probs=132.8

Q ss_pred             CceeCcCCCEEEEE-eCCcEEEEECCCCc---eEEEe--ecCceeeEE-cCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971          423 FPSFSPKGDRIAFV-EFPGVYVVNSDGSN---RRQVY--FKNAFSTVW-DPVREAVVYTSGGPEFASESSEVDIISINVD  495 (721)
Q Consensus       423 ~~~~SpDG~~la~~-~~~~l~v~d~~~g~---~~~l~--~~~~~~~~~-spdg~~la~~~~~~~~~~~~~~~~i~~~~~~  495 (721)
                      .++...+|+.|+.+ .+..|.+|+...+.   ...|.  ...+..+++ .++...+|..       .-+.++.||+++..
T Consensus        78 DiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSg-------GLD~~IflWDin~~  150 (735)
T KOG0308|consen   78 DIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASG-------GLDRKIFLWDINTG  150 (735)
T ss_pred             hHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEec-------CCCccEEEEEccCc
Confidence            34556678777777 58899999986553   12222  556777777 4444444433       25789999999864


Q ss_pred             CC-----CCccceEEcc-cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCC
Q 004971          496 DV-----DGVSAVRRLT-TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG  569 (721)
Q Consensus       496 ~~-----~~~~~~~~l~-~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG  569 (721)
                      ..     ........+. .....+++++-.+.|..|+..+.   ...|.+||..+++.  +..|-.+...+..+..++||
T Consensus       151 ~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt---ek~lr~wDprt~~k--imkLrGHTdNVr~ll~~dDG  225 (735)
T KOG0308|consen  151 TATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT---EKDLRLWDPRTCKK--IMKLRGHTDNVRVLLVNDDG  225 (735)
T ss_pred             chhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc---ccceEEeccccccc--eeeeeccccceEEEEEcCCC
Confidence            21     0000111222 12245667777788855554444   67899999998875  77777787778889999999


Q ss_pred             CEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEE
Q 004971          570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF  649 (721)
Q Consensus       570 ~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  649 (721)
                      ++++.++.++       .|.+||+.-.++..-... |...++...-+|+-+++|+.+.+.                 .||
T Consensus       226 t~~ls~sSDg-------tIrlWdLgqQrCl~T~~v-H~e~VWaL~~~~sf~~vYsG~rd~-----------------~i~  280 (735)
T KOG0308|consen  226 TRLLSASSDG-------TIRLWDLGQQRCLATYIV-HKEGVWALQSSPSFTHVYSGGRDG-----------------NIY  280 (735)
T ss_pred             CeEeecCCCc-------eEEeeeccccceeeeEEe-ccCceEEEeeCCCcceEEecCCCC-----------------cEE
Confidence            9999999886       899999977655443333 556678888888888887765554                 388


Q ss_pred             EEEcCC
Q 004971          650 KIKLDG  655 (721)
Q Consensus       650 ~~d~~~  655 (721)
                      +-|+.+
T Consensus       281 ~Tdl~n  286 (735)
T KOG0308|consen  281 RTDLRN  286 (735)
T ss_pred             ecccCC
Confidence            888777

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.44  E-value=1.2e-05  Score=76.86  Aligned_cols=267  Identities=13%  Similarity=0.080  Sum_probs=162.1

Q ss_pred             CeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEec--cCC----------CC
Q 004971          345 SYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI--KSP----------LP  412 (721)
Q Consensus       345 ~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~--~~~----------~~  412 (721)
                      .+....+|.+++|+  -|....+|.+.+..+.|++.+..++..+.+...       .||....  ..+          +.
T Consensus       168 ADhTA~iWs~Esg~--CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta-------HIW~~av~~~vP~~~a~~~hSsEe  238 (481)
T KOG0300|consen  168 ADHTARIWSLESGA--CLATYTGHTGSVNSIKFHNSGLLLLTASGDETA-------HIWKAAVNWEVPSNNAPSDHSSEE  238 (481)
T ss_pred             cccceeEEeecccc--ceeeecccccceeeEEeccccceEEEccCCcch-------HHHHHhhcCcCCCCCCCCCCCchh
Confidence            34456799999998  555667888889999999999888877766663       3333111  111          00


Q ss_pred             cceecccCCCC--ceeCcCCCEEEEEeCCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEE
Q 004971          413 DISLFRFDGSF--PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDII  490 (721)
Q Consensus       413 ~~~~~~~~~~~--~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~  490 (721)
                      ++.........  -..+.||..|-      +=++.+.+-      .+.+....|-..|+.++..+       -+....+|
T Consensus       239 E~e~sDe~~~d~d~~~~sD~~tiR------vPl~~ltgH------~~vV~a~dWL~gg~Q~vTaS-------WDRTAnlw  299 (481)
T KOG0300|consen  239 EEEHSDEHNRDTDSSEKSDGHTIR------VPLMRLTGH------RAVVSACDWLAGGQQMVTAS-------WDRTANLW  299 (481)
T ss_pred             hhhcccccccccccccccCCceee------eeeeeeecc------ccceEehhhhcCcceeeeee-------ccccceee
Confidence            11100000000  01112222111      111111110      23445667878888888776       46778899


Q ss_pred             EEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCC
Q 004971          491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE  570 (721)
Q Consensus       491 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~  570 (721)
                      ++....     .+..|+.++....+..-.|..+.++..+.   +....+||... ....+..+..+...+.+..|.-|.+
T Consensus       300 DVEtge-----~v~~LtGHd~ELtHcstHptQrLVvTsSr---DtTFRLWDFRe-aI~sV~VFQGHtdtVTS~vF~~dd~  370 (481)
T KOG0300|consen  300 DVETGE-----VVNILTGHDSELTHCSTHPTQRLVVTSSR---DTTFRLWDFRE-AIQSVAVFQGHTDTVTSVVFNTDDR  370 (481)
T ss_pred             eeccCc-----eeccccCcchhccccccCCcceEEEEecc---CceeEeccchh-hcceeeeecccccceeEEEEecCCc
Confidence            998754     66778888877778888888765555544   66778888762 2222333445566678899988765


Q ss_pred             EEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEE
Q 004971          571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK  650 (721)
Q Consensus       571 ~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  650 (721)
                       ++.++++.       .|.+||+..-..-.-+. .....++.++.|..++.|+.-..                 ++++.+
T Consensus       371 -vVSgSDDr-------TvKvWdLrNMRsplATI-RtdS~~NRvavs~g~~iIAiPhD-----------------NRqvRl  424 (481)
T KOG0300|consen  371 -VVSGSDDR-------TVKVWDLRNMRSPLATI-RTDSPANRVAVSKGHPIIAIPHD-----------------NRQVRL  424 (481)
T ss_pred             -eeecCCCc-------eEEEeeeccccCcceee-ecCCccceeEeecCCceEEeccC-----------------CceEEE
Confidence             66666553       89999997754322222 14556778888877776665332                 247999


Q ss_pred             EEcCCCCeEEecc-----CCCCCCCceec
Q 004971          651 IKLDGSDLKRLTQ-----NSFEDGTPAWG  674 (721)
Q Consensus       651 ~d~~~~~~~~lt~-----~~~~~~~~~~s  674 (721)
                      +|+.|..+.+|..     |...+...+|+
T Consensus       425 fDlnG~RlaRlPrtsRqgHrRMV~c~AW~  453 (481)
T KOG0300|consen  425 FDLNGNRLARLPRTSRQGHRRMVTCCAWL  453 (481)
T ss_pred             EecCCCccccCCcccccccceeeeeeecc
Confidence            9999998888874     23334556665

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=0.001  Score=70.44  Aligned_cols=244  Identities=16%  Similarity=0.181  Sum_probs=156.7

Q ss_pred             cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec---c-cCCCCceeCcCCCEEEEEe--CCcEEEE
Q 004971          371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF---R-FDGSFPSFSPKGDRIAFVE--FPGVYVV  444 (721)
Q Consensus       371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~-~~~~~~~~SpDG~~la~~~--~~~l~v~  444 (721)
                      ........++|..++........        +...+..  .......   . .......++++|.+++...  ...+.++
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~--------~~~~~~~--~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vi  101 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSND--------VSVIDAT--SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVI  101 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCce--------eeecccc--cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEE
Confidence            44567788888777775543331        1111111  0011110   0 2234568889998877774  6789999


Q ss_pred             ECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCC
Q 004971          445 NSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG  522 (721)
Q Consensus       445 d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg  522 (721)
                      |..+.+.....  ......++++|+++.++++..+      .....++.++..+.    .+.............+++|+|
T Consensus       102 d~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~------~~~~~vsvid~~t~----~~~~~~~vG~~P~~~a~~p~g  171 (381)
T COG3391         102 DTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAG------NGNNTVSVIDAATN----KVTATIPVGNTPTGVAVDPDG  171 (381)
T ss_pred             cCcccceeeEeeeccCCceEEECCCCCEEEEEecc------cCCceEEEEeCCCC----eEEEEEecCCCcceEEECCCC
Confidence            97665543322  3367789999999999998631      14566777776654    222222222234788999999


Q ss_pred             CEEEEEEeeCCceeEEEEECCCCcccceEE------CcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971          523 KWIVFRSTRTGYKNLYIMDAEGGEGYGLHR------LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       523 ~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~------l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                      ++++....  ....|.++|.++..   +.+      +..+ .....+.++|||+.++......    ....+...|..++
T Consensus       172 ~~vyv~~~--~~~~v~vi~~~~~~---v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~----~~~~v~~id~~~~  241 (381)
T COG3391         172 NKVYVTNS--DDNTVSVIDTSGNS---VVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGS----GSNNVLKIDTATG  241 (381)
T ss_pred             CeEEEEec--CCCeEEEEeCCCcc---eeccccccccccC-CCCceEEECCCCCEEEEEeccC----CCceEEEEeCCCc
Confidence            99988873  36789999987665   332      2222 2236789999999888777653    2358999999888


Q ss_pred             ceEEeeec-CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEe
Q 004971          597 GLRKLIQS-GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL  661 (721)
Q Consensus       597 ~~~~l~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l  661 (721)
                      ........ ... ....+..+|+|++++......+                .+++.|..+..+...
T Consensus       242 ~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~----------------~V~vid~~~~~v~~~  290 (381)
T COG3391         242 NVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGG----------------TVSVIDGATDRVVKT  290 (381)
T ss_pred             eEEEeccccccC-CCCceeECCCCCEEEEEecCCC----------------eEEEEeCCCCceeee
Confidence            76655221 122 5677899999999988766643                488888877665543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.43  E-value=0.00046  Score=75.39  Aligned_cols=326  Identities=11%  Similarity=0.069  Sum_probs=175.5

Q ss_pred             ccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccC-------CcceeccCCeEEEEeccCCCCcEEE
Q 004971          222 AVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENG-------GWPCWVDESTLFFHRKSEEDDWISV  294 (721)
Q Consensus       222 ~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~-------~~~~ws~dg~l~~~~~~~~~g~~~l  294 (721)
                      .+++-|.+.+.+.             ...++.|....+..........       ...+++|.++++.+  .+.+|.+.+
T Consensus       167 ~~~~~ge~~~i~~-------------~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa--~d~dGrI~v  231 (792)
T KOG1963|consen  167 VDNNSGEFKGIVH-------------MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAA--GDSDGRILV  231 (792)
T ss_pred             EEcCCceEEEEEE-------------eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEE--eccCCcEEE
Confidence            5677776665543             3567777776655221111111       12478899887774  344788999


Q ss_pred             EEEec-CCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCccc
Q 004971          295 YKVIL-PQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHL  373 (721)
Q Consensus       295 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~  373 (721)
                      |+-.. .+..      ...+.+--|...+..++||+ ||.+|+.     |+....+.+|.+++++.+-|.+.   +..+.
T Consensus       232 w~d~~~~~~~------~t~t~lHWH~~~V~~L~fS~-~G~~LlS-----GG~E~VLv~Wq~~T~~kqfLPRL---gs~I~  296 (792)
T KOG1963|consen  232 WRDFGSSDDS------ETCTLLHWHHDEVNSLSFSS-DGAYLLS-----GGREGVLVLWQLETGKKQFLPRL---GSPIL  296 (792)
T ss_pred             Eecccccccc------ccceEEEecccccceeEEec-CCceEee-----cccceEEEEEeecCCCccccccc---CCeeE
Confidence            95322 1111      13344444445678899999 9998876     34445699999999986556655   66688


Q ss_pred             CcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEec---cCC--CCcceec--------ccCCCCceeCcCCCEEEEE-eCC
Q 004971          374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI---KSP--LPDISLF--------RFDGSFPSFSPKGDRIAFV-EFP  439 (721)
Q Consensus       374 ~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~---~~~--~~~~~~~--------~~~~~~~~~SpDG~~la~~-~~~  439 (721)
                      ++.+|||+........++.         +.+...   ...  ...+...        ..-...+.++|--+.+++. ..+
T Consensus       297 ~i~vS~ds~~~sl~~~DNq---------I~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g  367 (792)
T KOG1963|consen  297 HIVVSPDSDLYSLVLEDNQ---------IHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPG  367 (792)
T ss_pred             EEEEcCCCCeEEEEecCce---------EEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCc
Confidence            8999999998887776665         222221   111  1111110        1112345677744455665 366


Q ss_pred             cEEEEECCCCc-eEEEe-------ec------CceeeEEcCCCCeEEEEecCCCC---CCCCCcEEEEEEEccCCCCccc
Q 004971          440 GVYVVNSDGSN-RRQVY-------FK------NAFSTVWDPVREAVVYTSGGPEF---ASESSEVDIISINVDDVDGVSA  502 (721)
Q Consensus       440 ~l~v~d~~~g~-~~~l~-------~~------~~~~~~~spdg~~la~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~  502 (721)
                      .|..||+-+.+ ...+.       ++      .+...+.+-.|.+++......+.   .......++|..+.+.. ...-
T Consensus       368 ~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k-t~~L  446 (792)
T KOG1963|consen  368 HVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSK-TFIL  446 (792)
T ss_pred             eEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcc-eeEE
Confidence            77788875443 22211       11      23456667778888876532111   11134567787776542 0000


Q ss_pred             eEEcc-cCCCCCcceEE-ccCCC-EEEEEEeeCCceeEEEEECCCC----cc-cceEECc-CCCcCceeeEEccCCCEEE
Q 004971          503 VRRLT-TNGKNNAFPSV-SPDGK-WIVFRSTRTGYKNLYIMDAEGG----EG-YGLHRLT-EGPWSDTMCNWSPDGEWIA  573 (721)
Q Consensus       503 ~~~l~-~~~~~~~~~~~-SpDg~-~l~~~s~~~g~~~l~~~d~~~g----~~-~~~~~l~-~~~~~~~~~~~SpDG~~l~  573 (721)
                      ...+. .++.......+ +|-.. +.++++. ++.-.||.+.-+..    .. -....+. .+...+..++||-||+.|+
T Consensus       447 ~T~I~~PH~~~~vat~~~~~~rs~~~vta~~-dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla  525 (792)
T KOG1963|consen  447 NTKINNPHGNAFVATIFLNPTRSVRCVTASV-DGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA  525 (792)
T ss_pred             EEEEecCCCceeEEEEEecCcccceeEEecc-CCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE
Confidence            11111 12212222233 33333 4555544 33344554421111    00 0011111 1234467899999998777


Q ss_pred             EEEccCCCCCCceeEEEEecCCC
Q 004971          574 FASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       574 ~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                      .+..+        .|-+||..+.
T Consensus       526 ~s~~~--------~Itiwd~~~~  540 (792)
T KOG1963|consen  526 VSFDD--------TITIWDYDTK  540 (792)
T ss_pred             EecCC--------EEEEecCCCh
Confidence            66665        7999998773

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=98.42  E-value=3.1e-05  Score=74.76  Aligned_cols=211  Identities=15%  Similarity=0.163  Sum_probs=123.8

Q ss_pred             eeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe------ecCceeeEEcCCCCe
Q 004971          401 QLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY------FKNAFSTVWDPVREA  470 (721)
Q Consensus       401 ~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~------~~~~~~~~~spdg~~  470 (721)
                      .|++.+....  ...+.........+.+.|+...|+..  .+..|.+|++.+....-+.      .+.+.++.|++||.+
T Consensus       116 vIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~  195 (385)
T KOG1034|consen  116 VIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDR  195 (385)
T ss_pred             EEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCe
Confidence            3566665433  23344444455667888988666555  4788999999998877776      245779999999999


Q ss_pred             EEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc---ccCC-------CCCcceEEc-cC------------CCEEEE
Q 004971          471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL---TTNG-------KNNAFPSVS-PD------------GKWIVF  527 (721)
Q Consensus       471 la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l---~~~~-------~~~~~~~~S-pD------------g~~l~~  527 (721)
                      |+...       .+..+.+|+++...-  ...++..   ....       .....|.|| .|            |.+++.
T Consensus       196 i~ScG-------mDhslk~W~l~~~~f--~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilS  266 (385)
T KOG1034|consen  196 IASCG-------MDHSLKLWRLNVKEF--KNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILS  266 (385)
T ss_pred             eeccC-------CcceEEEEecChhHH--hhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheee
Confidence            88775       578999999985321  0000000   0000       011122221 11            222221


Q ss_pred             EEeeCCceeEEEEECC-CCcc-----------cceEECcCCCcCcee--eEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971          528 RSTRTGYKNLYIMDAE-GGEG-----------YGLHRLTEGPWSDTM--CNWSPDGEWIAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       528 ~s~~~g~~~l~~~d~~-~g~~-----------~~~~~l~~~~~~~~~--~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                         .+..+.|..|-.. =++.           ..+..+.-....+..  .+|.|-+++||.+...+       .+|+||+
T Consensus       267 ---kscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g-------~v~vwdL  336 (385)
T KOG1034|consen  267 ---KSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSG-------KVYVWDL  336 (385)
T ss_pred             ---cccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCC-------cEEEEEC
Confidence               1235577777661 1110           001111111222333  45667788888877664       8999999


Q ss_pred             CCCce---EEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          594 NGTGL---RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       594 ~~~~~---~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      +..++   .+++.......+...+||-||..|++...+..
T Consensus       337 ~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~  376 (385)
T KOG1034|consen  337 DNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGT  376 (385)
T ss_pred             CCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCc
Confidence            87765   33443323456788999999999988777663

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.42  E-value=1.2e-05  Score=84.22  Aligned_cols=190  Identities=12%  Similarity=0.134  Sum_probs=121.3

Q ss_pred             CCCceeCcCCCEEEEEeCCcEEEEECCCCc-eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971          421 GSFPSFSPKGDRIAFVEFPGVYVVNSDGSN-RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV  497 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~~~~~l~v~d~~~g~-~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~  497 (721)
                      ...++|-|||+.|+.+.+..++++|...|. .+.+.  ..-+..++||.||++++..+       .+..+.||.-...+.
T Consensus        15 i~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~-------aDK~VI~W~~klEG~   87 (1081)
T KOG1538|consen   15 INDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGS-------ADKSVIIWTSKLEGI   87 (1081)
T ss_pred             hheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCC-------CceeEEEecccccce
Confidence            345799999999999999999999997665 45555  56788999999999998765       466777777665542


Q ss_pred             CCc---cce---------------------------EEcccC--CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCC
Q 004971          498 DGV---SAV---------------------------RRLTTN--GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG  545 (721)
Q Consensus       498 ~~~---~~~---------------------------~~l~~~--~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g  545 (721)
                      ...   ...                           +.+..+  .......+|..||++++..-.   +..|-+-+.. |
T Consensus        88 LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~---nGTIsiRNk~-g  163 (1081)
T KOG1538|consen   88 LKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMF---NGTISIRNKN-G  163 (1081)
T ss_pred             eeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEecc---CceEEeecCC-C
Confidence            000   000                           000011  123445789999999988765   5667666544 4


Q ss_pred             cccc-eEECcCCCcCceeeEEccCC-----CEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCC
Q 004971          546 EGYG-LHRLTEGPWSDTMCNWSPDG-----EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG  619 (721)
Q Consensus       546 ~~~~-~~~l~~~~~~~~~~~~SpDG-----~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG  619 (721)
                      +++. +.+-......+.+++|+|..     ..+++....       .++-.+.+++....+--.  .+.....+++-++|
T Consensus       164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~-------qTLSFy~LsG~~Igk~r~--L~FdP~CisYf~NG  234 (1081)
T KOG1538|consen  164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWG-------QTLSFYQLSGKQIGKDRA--LNFDPCCISYFTNG  234 (1081)
T ss_pred             CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecc-------ceeEEEEecceeeccccc--CCCCchhheeccCC
Confidence            4321 11222234557788888863     245555544       367777776643221111  23445678888999


Q ss_pred             CEEEEEEecCC
Q 004971          620 KSIVFTSDYGG  630 (721)
Q Consensus       620 ~~l~~~~~~~~  630 (721)
                      .++.....+..
T Consensus       235 Ey~LiGGsdk~  245 (1081)
T KOG1538|consen  235 EYILLGGSDKQ  245 (1081)
T ss_pred             cEEEEccCCCc
Confidence            99998877764

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.41  E-value=2.9e-05  Score=76.21  Aligned_cols=167  Identities=14%  Similarity=0.139  Sum_probs=107.4

Q ss_pred             cEEEEECCCCc-eEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC---CCCc
Q 004971          440 GVYVVNSDGSN-RRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG---KNNA  514 (721)
Q Consensus       440 ~l~v~d~~~g~-~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~---~~~~  514 (721)
                      .+.+++...+. .-.+. +..+..+.+  +-++|++.-        ...+.||++..-.     .+..+...+   ....
T Consensus        69 ~Lkv~~~Kk~~~ICe~~fpt~IL~Vrm--Nr~RLvV~L--------ee~IyIydI~~Mk-----lLhTI~t~~~n~~gl~  133 (391)
T KOG2110|consen   69 KLKVVHFKKKTTICEIFFPTSILAVRM--NRKRLVVCL--------EESIYIYDIKDMK-----LLHTIETTPPNPKGLC  133 (391)
T ss_pred             eEEEEEcccCceEEEEecCCceEEEEE--ccceEEEEE--------cccEEEEecccce-----eehhhhccCCCccceE
Confidence            46666665433 22232 445555555  345666664        2347777765322     233333331   2233


Q ss_pred             ceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971          515 FPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN  594 (721)
Q Consensus       515 ~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~  594 (721)
                      .+++++++.+|+|-+.++ ..+|++||..+-++  +..+..|.+.+..++|+|||..||.++.++      .-|.++.+.
T Consensus       134 AlS~n~~n~ylAyp~s~t-~GdV~l~d~~nl~~--v~~I~aH~~~lAalafs~~G~llATASeKG------TVIRVf~v~  204 (391)
T KOG2110|consen  134 ALSPNNANCYLAYPGSTT-SGDVVLFDTINLQP--VNTINAHKGPLAALAFSPDGTLLATASEKG------TVIRVFSVP  204 (391)
T ss_pred             eeccCCCCceEEecCCCC-CceEEEEEccccee--eeEEEecCCceeEEEECCCCCEEEEeccCc------eEEEEEEcC
Confidence            344555666999986543 56899999987654  666777888889999999999999999875      467888887


Q ss_pred             CCceEEeeecC-CCCCcCCeEECCCCCEEEEEEecCC
Q 004971          595 GTGLRKLIQSG-SAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       595 ~~~~~~l~~~~-~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      .|+...-..-+ ....+.+++|+||+++|..+++..+
T Consensus       205 ~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT  241 (391)
T KOG2110|consen  205 EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET  241 (391)
T ss_pred             CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe
Confidence            77543333211 1234678999999999988887665

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=98.38  E-value=0.0012  Score=70.81  Aligned_cols=260  Identities=12%  Similarity=0.098  Sum_probs=159.3

Q ss_pred             ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcce
Q 004971          322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQ  401 (721)
Q Consensus       322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~  401 (721)
                      ...++.|| |.+.++|+.+..|.+.-.|++.|+++|+.  +....  ..-...++|.+|++.++|++.+....    ..+
T Consensus       131 Lg~~~~s~-D~~~la~s~D~~G~e~y~lr~kdL~tg~~--~~d~i--~~~~~~~~Wa~d~~~lfYt~~d~~~r----p~k  201 (682)
T COG1770         131 LGAASISP-DHNLLAYSVDVLGDEQYTLRFKDLATGEE--LPDEI--TNTSGSFAWAADGKTLFYTRLDENHR----PDK  201 (682)
T ss_pred             eeeeeeCC-CCceEEEEEecccccEEEEEEEecccccc--cchhh--cccccceEEecCCCeEEEEEEcCCCC----cce
Confidence            34678899 99999999999999999999999999973  32211  22355789999999999998876632    146


Q ss_pred             eEEEeccCCCC--cceecccCC-CCc--eeCcCCCEEEEE----eCCcEEEEECCCCc--eEEEee-cCceeeEEcCCCC
Q 004971          402 LLLENIKSPLP--DISLFRFDG-SFP--SFSPKGDRIAFV----EFPGVYVVNSDGSN--RRQVYF-KNAFSTVWDPVRE  469 (721)
Q Consensus       402 l~~~~~~~~~~--~~~~~~~~~-~~~--~~SpDG~~la~~----~~~~l~v~d~~~g~--~~~l~~-~~~~~~~~spdg~  469 (721)
                      ++...+.++..  .+.-...+. .++  .-+.+.++|+..    ..+++++++.+...  ++.+.. .....+....-|.
T Consensus       202 v~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d  281 (682)
T COG1770         202 VWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGD  281 (682)
T ss_pred             EEEEecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCc
Confidence            77777776422  211111111 111  224555666655    25678888876544  444442 2233344445577


Q ss_pred             eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccc
Q 004971          470 AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG  549 (721)
Q Consensus       470 ~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~  549 (721)
                      ++++.++.     ...+..|+.......  ....+.+..+.....--.++-=.++|+......+-..|++++..+++.  
T Consensus       282 ~f~i~sN~-----~gknf~l~~ap~~~~--~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~--  352 (682)
T COG1770         282 RFYILSNA-----DGKNFKLVRAPVSAD--KSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEE--  352 (682)
T ss_pred             EEEEEecC-----CCcceEEEEccCCCC--hhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCce--
Confidence            77777752     235677777665110  113344445543444445666678898888777888999999988873  


Q ss_pred             eEECcCCC-cCceeeEEc--cCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971          550 LHRLTEGP-WSDTMCNWS--PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ  603 (721)
Q Consensus       550 ~~~l~~~~-~~~~~~~~S--pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  603 (721)
                       ..+.-.. .....+..+  ++...|-+.....   ....++|-+|+.+++.+.+..
T Consensus       353 -~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~---ttP~~~~~~dm~t~er~~Lkq  405 (682)
T COG1770         353 -RGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSM---TTPATLFDYDMATGERTLLKQ  405 (682)
T ss_pred             -eeEEecchhhhccccCCCCCCCccEEEEeecc---cccceeEEeeccCCcEEEEEe
Confidence             3333221 111222222  3445555554432   245699999999998776654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=98.34  E-value=0.00013  Score=72.35  Aligned_cols=187  Identities=19%  Similarity=0.200  Sum_probs=109.3

Q ss_pred             CCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          421 GSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      ...+++|+||+.+|++.    ...|++....+.....+.......+.|+++|...++..       ......++.....+
T Consensus        26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~-------~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDD-------GSGGVRVVRDSASG   98 (253)
T ss_pred             ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEc-------CCCceEEEEecCCC
Confidence            45689999999999985    45677776554444444556788999999966555543       23334444322222


Q ss_pred             CCCccceEEcccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEECC---CCccc---ceEECc-CCCcCceeeEEcc
Q 004971          497 VDGVSAVRRLTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE---GGEGY---GLHRLT-EGPWSDTMCNWSP  567 (721)
Q Consensus       497 ~~~~~~~~~l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~---~g~~~---~~~~l~-~~~~~~~~~~~Sp  567 (721)
                      .   .....+....  ..+..+.+||||.++++.....+..+|++--+.   .|...   ....+. .....+..++|.+
T Consensus        99 ~---~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~  175 (253)
T PF10647_consen   99 T---GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD  175 (253)
T ss_pred             c---ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence            1   1222333322  267789999999999999987777888886543   23110   111222 2233457899999


Q ss_pred             CCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEE
Q 004971          568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF  624 (721)
Q Consensus       568 DG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~  624 (721)
                      +++.++......    . .....+.++++....+..  ........+...+...++.
T Consensus       176 ~~~L~V~~~~~~----~-~~~~~v~~dG~~~~~l~~--~~~~~~v~a~~~~~~~~~~  225 (253)
T PF10647_consen  176 DSTLVVLGRSAG----G-PVVRLVSVDGGPSTPLPS--VNLGVPVVAVAASPSTVYV  225 (253)
T ss_pred             CCEEEEEeCCCC----C-ceeEEEEccCCcccccCC--CCCCcceEEeeCCCcEEEE
Confidence            998666655543    2 122247777777666632  2223334444444444433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.32  E-value=0.00027  Score=68.21  Aligned_cols=170  Identities=12%  Similarity=0.112  Sum_probs=111.4

Q ss_pred             CcEEEEECCCC-ceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcce
Q 004971          439 PGVYVVNSDGS-NRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFP  516 (721)
Q Consensus       439 ~~l~v~d~~~g-~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~  516 (721)
                      ..|.+||=.-. ....+. ...+..+.+++|  +|+++.        ..++.||....+-.    ..+.+........-.
T Consensus        75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl--------~~~I~VytF~~n~k----~l~~~et~~NPkGlC  140 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVL--------ENKIYVYTFPDNPK----LLHVIETRSNPKGLC  140 (346)
T ss_pred             ceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEe--------cCeEEEEEcCCChh----heeeeecccCCCceE
Confidence            45889983222 223333 667778888665  566654        36677777664321    333333322222234


Q ss_pred             EEccC--CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971          517 SVSPD--GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN  594 (721)
Q Consensus       517 ~~SpD--g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~  594 (721)
                      +..|-  ...|||-+..  .++|.+.|+...+...+..+..+...+.-++.+-+|..||.++..+      .-|.++|..
T Consensus       141 ~~~~~~~k~~LafPg~k--~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG------TLIRIFdt~  212 (346)
T KOG2111|consen  141 SLCPTSNKSLLAFPGFK--TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG------TLIRIFDTE  212 (346)
T ss_pred             eecCCCCceEEEcCCCc--cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc------EEEEEEEcC
Confidence            55553  3455555544  4678888987655322466777888888999999999999998875      468899999


Q ss_pred             CCceEEeeecC-CCCCcCCeEECCCCCEEEEEEecCC
Q 004971          595 GTGLRKLIQSG-SAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       595 ~~~~~~l~~~~-~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      +|+..+-...+ ....+..++||||+.+|+.+++.++
T Consensus       213 ~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT  249 (346)
T KOG2111|consen  213 DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT  249 (346)
T ss_pred             CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe
Confidence            88766544332 2345678999999999999888775

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.31  E-value=6.9e-06  Score=81.35  Aligned_cols=153  Identities=13%  Similarity=0.156  Sum_probs=108.4

Q ss_pred             ceeeEEcCCCC-eEEEEecCCCCCCCCCcEEEEEEEccCCCCc-cc---eEEcccCCCCCcceEEccCCCEEEEEEeeCC
Q 004971          459 AFSTVWDPVRE-AVVYTSGGPEFASESSEVDIISINVDDVDGV-SA---VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG  533 (721)
Q Consensus       459 ~~~~~~spdg~-~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~---~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g  533 (721)
                      +..+.|.+++. +++...       .+.+++||.+.....++. ..   ...|+.+...+..+.|+|+|..|+...+   
T Consensus        16 v~s~dfq~n~~~~laT~G-------~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D---   85 (434)
T KOG1009|consen   16 VYSVDFQKNSLNKLATAG-------GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD---   85 (434)
T ss_pred             eEEEEeccCcccceeccc-------CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC---
Confidence            34444555544 444442       578899999886543221 12   2345666778888999999999998776   


Q ss_pred             ceeEEEEECC--------C-----Ccc-cceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971          534 YKNLYIMDAE--------G-----GEG-YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR  599 (721)
Q Consensus       534 ~~~l~~~d~~--------~-----g~~-~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~  599 (721)
                      ...+++|-..        +     .+. ...+.+..+...+..++|+||+..+++++.+.       .+++||+..|...
T Consensus        86 ~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dn-------s~~l~Dv~~G~l~  158 (434)
T KOG1009|consen   86 GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDN-------SVRLWDVHAGQLL  158 (434)
T ss_pred             CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccc-------eEEEEEeccceeE
Confidence            6677777654        2     111 11222334455678899999999999999875       8999999999887


Q ss_pred             EeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       600 ~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      ..... +...+..++|.|-+++++..+.+.
T Consensus       159 ~~~~d-h~~yvqgvawDpl~qyv~s~s~dr  187 (434)
T KOG1009|consen  159 AILDD-HEHYVQGVAWDPLNQYVASKSSDR  187 (434)
T ss_pred             eeccc-cccccceeecchhhhhhhhhccCc
Confidence            77654 778889999999999998877655

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.31  E-value=5.2e-05  Score=73.08  Aligned_cols=242  Identities=13%  Similarity=0.176  Sum_probs=148.8

Q ss_pred             ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCc-eEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNK-FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~-~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      +..-+|++ |+..++...     .+..+.+|...... .+....+..|...+..+.|+|...+|+....+.+.       
T Consensus        13 itchAwn~-drt~iAv~~-----~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drna-------   79 (361)
T KOG1523|consen   13 ITCHAWNS-DRTQIAVSP-----NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNA-------   79 (361)
T ss_pred             eeeeeecC-CCceEEecc-----CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCc-------
Confidence            45567899 999888843     33457888777666 55666677788888899999999999998777662       


Q ss_pred             eeEEEec-cCC--CCcceec--ccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCce----EEEe---ecCceeeEEcCC
Q 004971          401 QLLLENI-KSP--LPDISLF--RFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNR----RQVY---FKNAFSTVWDPV  467 (721)
Q Consensus       401 ~l~~~~~-~~~--~~~~~~~--~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~----~~l~---~~~~~~~~~spd  467 (721)
                        |++.. .++  ...+.+.  ......+.|||.+..+|+.+ ...|-++-.+..+-    ++|.   ..-+..+.|.|+
T Consensus        80 --yVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn  157 (361)
T KOG1523|consen   80 --YVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN  157 (361)
T ss_pred             --cccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence              33332 121  1122222  22345689999999998884 45566666655442    1222   245678999999


Q ss_pred             CCeEEEEecCCCCCCCCCcEEEEEEEccCCC------Cc------cc-eEEcccCCCCCcceEEccCCCEEEEEEeeCCc
Q 004971          468 REAVVYTSGGPEFASESSEVDIISINVDDVD------GV------SA-VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY  534 (721)
Q Consensus       468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~------~~------~~-~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~  534 (721)
                      +-.|+..+       .+.+.+++..-..+-+      ..      +. ........+.+....|||+|..|++...   +
T Consensus       158 nVLlaaGs-------~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H---d  227 (361)
T KOG1523|consen  158 NVLLAAGS-------TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH---D  227 (361)
T ss_pred             cceecccc-------cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC---C
Confidence            99988876       4566666654332210      00      00 0111122356677899999999999998   7


Q ss_pred             eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971          535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      ..+.+.|..+...+ +..+.........+.|-.+.. ++.+..+     ....+|..+-++
T Consensus       228 s~v~~~da~~p~~~-v~~~~~~~lP~ls~~~ise~~-vv~ag~~-----c~P~lf~~~~~~  281 (361)
T KOG1523|consen  228 STVSFVDAAGPSER-VQSVATAQLPLLSVSWISENS-VVAAGYD-----CGPVLFVTDEEG  281 (361)
T ss_pred             CceEEeecCCCchh-ccchhhccCCceeeEeecCCc-eeecCCC-----CCceEEEecccc
Confidence            78999998876522 222222223334566655544 3333332     223677766543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.31  E-value=2.5e-05  Score=75.21  Aligned_cols=205  Identities=14%  Similarity=0.172  Sum_probs=130.9

Q ss_pred             CCceeCcCCCEEEEEe-CCcEEEEECCCCc-eEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971          422 SFPSFSPKGDRIAFVE-FPGVYVVNSDGSN-RRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV  494 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~-~~~l~v~d~~~g~-~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~  494 (721)
                      ...+|++|++.+|... ..++.+|...+.. .+...     +..+..+.|+|...+|+..+       .+.+.++|....
T Consensus        14 tchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs-------~drnayVw~~~~   86 (361)
T KOG1523|consen   14 TCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCS-------HDRNAYVWTQPS   86 (361)
T ss_pred             eeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEcc-------CCCCccccccCC
Confidence            3469999999999984 5688888887776 33222     45677899999999999886       567788887743


Q ss_pred             cCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc-cceEECcC-CCcCceeeEEccCCCEE
Q 004971          495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG-YGLHRLTE-GPWSDTMCNWSPDGEWI  572 (721)
Q Consensus       495 ~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~-~~~~~l~~-~~~~~~~~~~SpDG~~l  572 (721)
                      ++.  ....-.|.........+.|+|.+.++++.+.   ...|-++-.+..+- -.-+.+-. ....+..+.|.|++-.|
T Consensus        87 ~~~--WkptlvLlRiNrAAt~V~WsP~enkFAVgSg---ar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl  161 (361)
T KOG1523|consen   87 GGT--WKPTLVLLRINRAATCVKWSPKENKFAVGSG---ARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL  161 (361)
T ss_pred             CCe--eccceeEEEeccceeeEeecCcCceEEeccC---ccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence            331  1222334444456678899999999998875   34444443332210 00011111 12346789999999888


Q ss_pred             EEEEccCCCCCCceeEEEEecCCCceEE----------eeec--CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCC
Q 004971          573 AFASDRDNPGSGSFEMYLIHPNGTGLRK----------LIQS--GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPH  640 (721)
Q Consensus       573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~----------l~~~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~  640 (721)
                      +.++.+..  -.-...|+-+++.+....          +..+  ...+.+..+.|||+|..|+|...+..          
T Consensus       162 aaGs~D~k--~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~----------  229 (361)
T KOG1523|consen  162 AAGSTDGK--CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST----------  229 (361)
T ss_pred             cccccCcc--eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc----------
Confidence            88776631  011234555555432100          0000  14567788999999999999998875          


Q ss_pred             CCCCCccEEEEEcCCCC
Q 004971          641 QYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       641 ~~~~~~~l~~~d~~~~~  657 (721)
                             +++.|..+..
T Consensus       230 -------v~~~da~~p~  239 (361)
T KOG1523|consen  230 -------VSFVDAAGPS  239 (361)
T ss_pred             -------eEEeecCCCc
Confidence                   7777777664

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=98.30  E-value=5.2e-05  Score=79.45  Aligned_cols=268  Identities=12%  Similarity=0.091  Sum_probs=153.7

Q ss_pred             CCCEEEEEEecCCCCeeeEEEEECCCCce----EEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEe
Q 004971          331 NNKFIAVATRRPTSSYRHIELFDLVKNKF----IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLEN  406 (721)
Q Consensus       331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~----~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~  406 (721)
                      +-++|++..+..|    .|.++|...-..    .++..+..|...+.+..|-| |+..++ +..++       ..+..++
T Consensus        62 n~eHiLavadE~G----~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lV-sasGD-------sT~r~Wd  128 (720)
T KOG0321|consen   62 NKEHILAVADEDG----GIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLV-SASGD-------STIRPWD  128 (720)
T ss_pred             CccceEEEecCCC----ceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEE-EccCC-------ceeeeee
Confidence            5577777655544    388888765432    23455566777888999999 544433 33333       3345555


Q ss_pred             ccCCC-Cc---ceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCc---------------------eEEEe----
Q 004971          407 IKSPL-PD---ISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSN---------------------RRQVY----  455 (721)
Q Consensus       407 ~~~~~-~~---~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~---------------------~~~l~----  455 (721)
                      +.+.. ..   ...........+|+|+..-+...  .++.+.+||+.-..                     .+++.    
T Consensus       129 vk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~  208 (720)
T KOG0321|consen  129 VKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR  208 (720)
T ss_pred             eccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence            54431 11   11223345567899988765555  37888888863111                     00111    


Q ss_pred             -----ecCcee---eEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceE---EcccCC---CCCcceEEccC
Q 004971          456 -----FKNAFS---TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVR---RLTTNG---KNNAFPSVSPD  521 (721)
Q Consensus       456 -----~~~~~~---~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~l~~~~---~~~~~~~~SpD  521 (721)
                           ...+..   ..+..|...|+.++      ..++.+++|++......-..+..   .+..+.   .....+....-
T Consensus       209 k~kA~s~ti~ssvTvv~fkDe~tlaSag------a~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss  282 (720)
T KOG0321|consen  209 KWKAASNTIFSSVTVVLFKDESTLASAG------AADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS  282 (720)
T ss_pred             ccccccCceeeeeEEEEEeccceeeecc------CCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence                 112233   56677888888776      24789999999865420000111   111111   12223444455


Q ss_pred             CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCc---CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971          522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW---SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL  598 (721)
Q Consensus       522 g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~---~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~  598 (721)
                      |.+|+....   +..||.|++.+-... +..+..+..   ....-..|||+.+|+.++.+.       +.|+|.++.-+.
T Consensus       283 Gt~L~AsCt---D~sIy~ynm~s~s~s-P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~-------~ayiw~vs~~e~  351 (720)
T KOG0321|consen  283 GTYLFASCT---DNSIYFYNMRSLSIS-PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDE-------QAYIWVVSSPEA  351 (720)
T ss_pred             CCeEEEEec---CCcEEEEeccccCcC-chhhccCcccceeeeeeecCCCCceEeccCCCc-------ceeeeeecCccC
Confidence            689988887   789999999865521 222222211   112235699999999998886       889998877654


Q ss_pred             EEeeecCCCCCcCCeEECCC--CCEEEEEEecC
Q 004971          599 RKLIQSGSAGRANHPYFSPD--GKSIVFTSDYG  629 (721)
Q Consensus       599 ~~l~~~~~~~~~~~~~~SpD--G~~l~~~~~~~  629 (721)
                      -.....++...+..+.|.|.  +. ++..+.+.
T Consensus       352 ~~~~l~Ght~eVt~V~w~pS~~t~-v~TcSdD~  383 (720)
T KOG0321|consen  352 PPALLLGHTREVTTVRWLPSATTP-VATCSDDF  383 (720)
T ss_pred             ChhhhhCcceEEEEEeeccccCCC-ceeeccCc
Confidence            33333346666777888654  44 34445444

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.27  E-value=4.8e-05  Score=81.49  Aligned_cols=176  Identities=9%  Similarity=0.063  Sum_probs=123.9

Q ss_pred             CceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971          423 FPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV  497 (721)
Q Consensus       423 ~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~  497 (721)
                      .+.|++-.-.|+..  .++.|..||+........+   ...++++.|+|--...+++.      .+.+.+.+|++.....
T Consensus       138 ~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~------~dsG~lqlWDlRqp~r  211 (839)
T KOG0269|consen  138 KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI------HDSGYLQLWDLRQPDR  211 (839)
T ss_pred             eeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEe------cCCceEEEeeccCchh
Confidence            46777766666665  3788999999877655555   56788999999655444444      3678999999987654


Q ss_pred             CCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971          498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       498 ~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~  577 (721)
                          ...+++.|.+.+..+.|+|++.+||..+.   +..+.+||..+++......+- ....+..+.|-|+-++.+.+..
T Consensus       212 ----~~~k~~AH~GpV~c~nwhPnr~~lATGGR---DK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcs  283 (839)
T KOG0269|consen  212 ----CEKKLTAHNGPVLCLNWHPNREWLATGGR---DKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCS  283 (839)
T ss_pred             ----HHHHhhcccCceEEEeecCCCceeeecCC---CccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhh
Confidence                66788889899999999999999998874   778999999877643333332 2344678999999765444333


Q ss_pred             cCCCCCCceeEEEEecCCCc-eEEeeecCCCCCcCCeEECC
Q 004971          578 RDNPGSGSFEMYLIHPNGTG-LRKLIQSGSAGRANHPYFSP  617 (721)
Q Consensus       578 ~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~~~Sp  617 (721)
                      -.    ....|++||+.-.= +..... .|...+..++|..
T Consensus       284 mv----~dtsV~VWDvrRPYIP~~t~~-eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  284 MV----VDTSVHVWDVRRPYIPYATFL-EHTDSVTGIAWDS  319 (839)
T ss_pred             cc----ccceEEEEeeccccccceeee-ccCccccceeccC
Confidence            21    44689999996542 222222 2666777888865

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.26  E-value=0.00015  Score=68.90  Aligned_cols=201  Identities=9%  Similarity=0.094  Sum_probs=128.8

Q ss_pred             CCCcccCceeecCCCCEEEEEEecCCC--CeeeEEEEECCCCce-------EEeeccc-CCCCcccCcEEcCCCCEEEEE
Q 004971          318 PGLHAFTPATSPGNNKFIAVATRRPTS--SYRHIELFDLVKNKF-------IELTRFV-SPKTHHLNPFISPDSSRVGYH  387 (721)
Q Consensus       318 ~~~~~~~~~~sp~dG~~la~~~~~~g~--~~~~l~l~dl~tg~~-------~~l~~~~-~~~~~~~~~~~Spdg~~l~~~  387 (721)
                      +...+..++-+|.|.+.++...++.+.  ....+.+|.+.....       ..+..+. ..-+.+.++.|-|++.+++..
T Consensus        62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm  141 (370)
T KOG1007|consen   62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM  141 (370)
T ss_pred             CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe
Confidence            345677888888444544444443221  123466777653211       1111110 112356788999999999876


Q ss_pred             EeeCCCCCCCCcceeEEEeccCCCCcceecc--------cCCCCceeCc--CCCEEEEEeCCcEEEEECCCCce-EEEe-
Q 004971          388 KCRGGSTREDGNNQLLLENIKSPLPDISLFR--------FDGSFPSFSP--KGDRIAFVEFPGVYVVNSDGSNR-RQVY-  455 (721)
Q Consensus       388 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~Sp--DG~~la~~~~~~l~v~d~~~g~~-~~l~-  455 (721)
                      ..          ..|.++++....+.+....        ..-...+|||  ||..++..++..++-||+.+-.. ..|. 
T Consensus       142 ~d----------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~d  211 (370)
T KOG1007|consen  142 DD----------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIED  211 (370)
T ss_pred             cc----------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhh
Confidence            52          3355666554432111111        1112358887  89999999999999999986543 2232 


Q ss_pred             --ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCC
Q 004971          456 --FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG  533 (721)
Q Consensus       456 --~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g  533 (721)
                        ...+.++.|.|+-+.+++++      .+++.++||+....+.    .+..+..+...+..+.|.|--..|+.....  
T Consensus       212 AHgq~vrdlDfNpnkq~~lvt~------gDdgyvriWD~R~tk~----pv~el~~HsHWvW~VRfn~~hdqLiLs~~S--  279 (370)
T KOG1007|consen  212 AHGQRVRDLDFNPNKQHILVTC------GDDGYVRIWDTRKTKF----PVQELPGHSHWVWAVRFNPEHDQLILSGGS--  279 (370)
T ss_pred             hhcceeeeccCCCCceEEEEEc------CCCccEEEEeccCCCc----cccccCCCceEEEEEEecCccceEEEecCC--
Confidence              34578999999999999887      4789999999877654    677788888888899999988888877654  


Q ss_pred             ceeEEEE
Q 004971          534 YKNLYIM  540 (721)
Q Consensus       534 ~~~l~~~  540 (721)
                      +..+.++
T Consensus       280 Ds~V~Ls  286 (370)
T KOG1007|consen  280 DSAVNLS  286 (370)
T ss_pred             CceeEEE
Confidence            3344444

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.26  E-value=1.8e-06  Score=91.35  Aligned_cols=183  Identities=15%  Similarity=0.136  Sum_probs=128.7

Q ss_pred             cCCCCceeCcCCCEEEEEe-CCcEEEEECCCCc-eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971          419 FDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSN-RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV  494 (721)
Q Consensus       419 ~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~-~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~  494 (721)
                      .....+.|+++...|+... .+.|.+||+..++ .+.|+  ...+..+.|+|-|.+.+-.+       .+.+..+|++..
T Consensus        71 spIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gS-------tdtd~~iwD~Rk  143 (825)
T KOG0267|consen   71 SPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGS-------TDTDLKIWDIRK  143 (825)
T ss_pred             CcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccc-------ccccceehhhhc
Confidence            3345678888776666664 6689999998766 44555  44667888999998885543       578889998876


Q ss_pred             cCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEE
Q 004971          495 DDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF  574 (721)
Q Consensus       495 ~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~  574 (721)
                      .+     .......+...+..++|+|||++++...+   +..+.+||+..|+.  +.....+...+..+.|.|..-.++-
T Consensus       144 ~G-----c~~~~~s~~~vv~~l~lsP~Gr~v~~g~e---d~tvki~d~~agk~--~~ef~~~e~~v~sle~hp~e~Lla~  213 (825)
T KOG0267|consen  144 KG-----CSHTYKSHTRVVDVLRLSPDGRWVASGGE---DNTVKIWDLTAGKL--SKEFKSHEGKVQSLEFHPLEVLLAP  213 (825)
T ss_pred             cC-----ceeeecCCcceeEEEeecCCCceeeccCC---cceeeeeccccccc--ccccccccccccccccCchhhhhcc
Confidence            54     55555556666777899999999997776   78899999988874  4455556666677778887655555


Q ss_pred             EEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971          575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS  626 (721)
Q Consensus       575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~  626 (721)
                      ++.+       ..+..||+.+-+..--... ....+....|+|||+.++...
T Consensus       214 Gs~d-------~tv~f~dletfe~I~s~~~-~~~~v~~~~fn~~~~~~~~G~  257 (825)
T KOG0267|consen  214 GSSD-------RTVRFWDLETFEVISSGKP-ETDGVRSLAFNPDGKIVLSGE  257 (825)
T ss_pred             CCCC-------ceeeeeccceeEEeeccCC-ccCCceeeeecCCceeeecCc
Confidence            5555       3899999876332211111 234567889999999776543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=98.26  E-value=5e-05  Score=74.65  Aligned_cols=163  Identities=11%  Similarity=0.089  Sum_probs=107.3

Q ss_pred             cCceeeEEcC--CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCc
Q 004971          457 KNAFSTVWDP--VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY  534 (721)
Q Consensus       457 ~~~~~~~~sp--dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~  534 (721)
                      +..+.+.|||  .|+.+ . .      .-...+++|.....+-  ......++.+...+..++|||..+-+++...-  +
T Consensus       212 ~EGy~LdWSp~~~g~Ll-s-G------Dc~~~I~lw~~~~g~W--~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~--D  279 (440)
T KOG0302|consen  212 GEGYGLDWSPIKTGRLL-S-G------DCVKGIHLWEPSTGSW--KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC--D  279 (440)
T ss_pred             ccceeeecccccccccc-c-C------ccccceEeeeeccCce--eecCccccccccchhhhccCCccCceEEeeec--C
Confidence            4456789998  23222 1 1      1245677777766332  01223455566778889999998877776543  5


Q ss_pred             eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC---CceEEeeecCCCCCcC
Q 004971          535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG---TGLRKLIQSGSAGRAN  611 (721)
Q Consensus       535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~---~~~~~l~~~~~~~~~~  611 (721)
                      ..|.+||+..+..+.......+...++-++|+-+-..|+++.+++       .+.+||+..   +++...... |...+.
T Consensus       280 gsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdG-------t~~iwDLR~~~~~~pVA~fk~-Hk~pIt  351 (440)
T KOG0302|consen  280 GSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDG-------TLSIWDLRQFKSGQPVATFKY-HKAPIT  351 (440)
T ss_pred             ceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCc-------eEEEEEhhhccCCCcceeEEe-ccCCee
Confidence            689999998874322222245667888999998888777777765       899999854   344444443 778899


Q ss_pred             CeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971          612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       612 ~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                      ++.|+|....++.++..+.                +|-+||+.-
T Consensus       352 sieW~p~e~s~iaasg~D~----------------QitiWDlsv  379 (440)
T KOG0302|consen  352 SIEWHPHEDSVIAASGEDN----------------QITIWDLSV  379 (440)
T ss_pred             EEEeccccCceEEeccCCC----------------cEEEEEeec
Confidence            9999998766554444332                588888754

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.24  E-value=5.6e-05  Score=72.41  Aligned_cols=172  Identities=12%  Similarity=0.095  Sum_probs=116.0

Q ss_pred             CceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971          423 FPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD  498 (721)
Q Consensus       423 ~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~  498 (721)
                      ...|-..|+.++..+ +....+||+++|++..+.   +.......-.|..+.++..+       .+...++|++...-  
T Consensus       277 a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsS-------rDtTFRLWDFReaI--  347 (481)
T KOG0300|consen  277 ACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSS-------RDTTFRLWDFREAI--  347 (481)
T ss_pred             ehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEec-------cCceeEeccchhhc--
Confidence            346666788887775 677889999999977665   33445556666665555443       57889999987432  


Q ss_pred             CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971          499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~  578 (721)
                        ..+..+..+...+....|.-|.+ ++..++   +..+.+||+.+-.. .+..+-. ...++.++.|.-++.|++-.+.
T Consensus       348 --~sV~VFQGHtdtVTS~vF~~dd~-vVSgSD---DrTvKvWdLrNMRs-plATIRt-dS~~NRvavs~g~~iIAiPhDN  419 (481)
T KOG0300|consen  348 --QSVAVFQGHTDTVTSVVFNTDDR-VVSGSD---DRTVKVWDLRNMRS-PLATIRT-DSPANRVAVSKGHPIIAIPHDN  419 (481)
T ss_pred             --ceeeeecccccceeEEEEecCCc-eeecCC---CceEEEeeeccccC-cceeeec-CCccceeEeecCCceEEeccCC
Confidence              14455556666777888887755 666665   78999999986542 1333332 2345778888777777766654


Q ss_pred             CCCCCCceeEEEEecCCCceEEeeec---CCCCCcCCeEECCC
Q 004971          579 DNPGSGSFEMYLIHPNGTGLRKLIQS---GSAGRANHPYFSPD  618 (721)
Q Consensus       579 ~~~~~~~~~i~~~d~~~~~~~~l~~~---~~~~~~~~~~~SpD  618 (721)
                             .+|.++|+.+..+-++...   +|...+...+|+.+
T Consensus       420 -------RqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee  455 (481)
T KOG0300|consen  420 -------RQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE  455 (481)
T ss_pred             -------ceEEEEecCCCccccCCcccccccceeeeeeecccc
Confidence                   3899999999877666522   24556677778755

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.23  E-value=0.00019  Score=74.45  Aligned_cols=268  Identities=10%  Similarity=0.062  Sum_probs=158.4

Q ss_pred             CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCc-ccCcEEcCCCCEEEEEEeeCCCCCC
Q 004971          318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTH-HLNPFISPDSSRVGYHKCRGGSTRE  396 (721)
Q Consensus       318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~-~~~~~~Spdg~~l~~~~~~~~~~~~  396 (721)
                      .......+..|| ||+|+...    |-...+|.+||+..-..+- ...  -... +.-.-+|-|=..+++...+..+.  
T Consensus        50 ~p~ast~ik~s~-DGqY~lAt----G~YKP~ikvydlanLSLKF-ERh--lDae~V~feiLsDD~SK~v~L~~DR~Ie--  119 (703)
T KOG2321|consen   50 MPTASTRIKVSP-DGQYLLAT----GTYKPQIKVYDLANLSLKF-ERH--LDAEVVDFEILSDDYSKSVFLQNDRTIE--  119 (703)
T ss_pred             CccccceeEecC-CCcEEEEe----cccCCceEEEEcccceeee-eec--ccccceeEEEeccchhhheEeecCceee--
Confidence            344456788999 99998764    3456679999997543211 111  1122 22233455555566655444321  


Q ss_pred             CCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCce-EEEe--ecCceeeEEcCCCCeEE
Q 004971          397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNR-RQVY--FKNAFSTVWDPVREAVV  472 (721)
Q Consensus       397 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~-~~l~--~~~~~~~~~spdg~~la  472 (721)
                             +.. ..+...-+-.+..++.+.++.-..-|+++ ....||.++++.|.. ..+.  .+.+..+..++-...|+
T Consensus       120 -------fHa-k~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla  191 (703)
T KOG2321|consen  120 -------FHA-KYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLA  191 (703)
T ss_pred             -------ehh-hcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEE
Confidence                   110 11111111122234444443223234444 678999999998873 3333  46777888888888888


Q ss_pred             EEecCCCCCCCCCcEEEEEEEccCCCCccce---EEcccCC-----CCCcceEEccCCCEEEEEEeeCCceeEEEEECCC
Q 004971          473 YTSGGPEFASESSEVDIISINVDDVDGVSAV---RRLTTNG-----KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG  544 (721)
Q Consensus       473 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~l~~~~-----~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~  544 (721)
                      +.+       .++.+..|+......  .+.+   ..+..+.     ..+..+.|+-||-.+++...   ...++++|+.+
T Consensus       192 ~Gt-------~~g~VEfwDpR~ksr--v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts---~G~v~iyDLRa  259 (703)
T KOG2321|consen  192 CGT-------EDGVVEFWDPRDKSR--VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS---TGSVLIYDLRA  259 (703)
T ss_pred             ecc-------cCceEEEecchhhhh--heeeecccccCCCccccccCcceEEEecCCceeEEeecc---CCcEEEEEccc
Confidence            775       467888887765432  0011   1122222     23677899999999999887   78999999998


Q ss_pred             CcccceEECcCC--CcCceeeEEccC--CCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCC
Q 004971          545 GEGYGLHRLTEG--PWSDTMCNWSPD--GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK  620 (721)
Q Consensus       545 g~~~~~~~l~~~--~~~~~~~~~SpD--G~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~  620 (721)
                      .++   ..+..+  ...+..+.|-+.  +..|+.....        .+.+||-.+|+.-....  ....+..+++-|++-
T Consensus       260 ~~p---l~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~--------~~kiWd~~~Gk~~asiE--pt~~lND~C~~p~sG  326 (703)
T KOG2321|consen  260 SKP---LLVKDHGYELPIKKLDWQDTDQQNKVVSMDKR--------ILKIWDECTGKPMASIE--PTSDLNDFCFVPGSG  326 (703)
T ss_pred             CCc---eeecccCCccceeeecccccCCCceEEecchH--------HhhhcccccCCceeecc--ccCCcCceeeecCCc
Confidence            773   333332  334566778554  3444444333        78999999998766554  334588899999887


Q ss_pred             EEEEEEecC
Q 004971          621 SIVFTSDYG  629 (721)
Q Consensus       621 ~l~~~~~~~  629 (721)
                      .+++ ++++
T Consensus       327 m~f~-Ane~  334 (703)
T KOG2321|consen  327 MFFT-ANES  334 (703)
T ss_pred             eEEE-ecCC
Confidence            6554 4443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=98.22  E-value=0.00027  Score=74.98  Aligned_cols=265  Identities=12%  Similarity=0.071  Sum_probs=152.2

Q ss_pred             EeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccC-cEEcC-CCCEEEEEEeeC
Q 004971          314 RVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLN-PFISP-DSSRVGYHKCRG  391 (721)
Q Consensus       314 ~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~-~~~Sp-dg~~l~~~~~~~  391 (721)
                      .+..|..++..+++.+  +..++-.     +.++.+.+|+...++....+...++.+.+.. ..+-+ |+.+|++.+.+.
T Consensus         9 ~l~gH~~DVr~v~~~~--~~~i~s~-----sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~   81 (745)
T KOG0301|consen    9 ELEGHKSDVRAVAVTD--GVCIISG-----SRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT   81 (745)
T ss_pred             EeccCccchheeEecC--CeEEeec-----CCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence            3445555556665543  3344432     2334488998876665554444444333322 33332 344455544444


Q ss_pred             CCCCCCCcceeEEEeccCCCCcceecccCCCCceeC--cCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcC
Q 004971          392 GSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFS--PKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDP  466 (721)
Q Consensus       392 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~S--pDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~sp  466 (721)
                      .         +.+..+.+...-.++......-.+.|  .++. ++..+ +..+.+|....-... +.  ...+..+..-|
T Consensus        82 ~---------i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~-l~gH~asVWAv~~l~  150 (745)
T KOG0301|consen   82 T---------IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYS-LQGHTASVWAVASLP  150 (745)
T ss_pred             e---------EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcc-cCCcchheeeeeecC
Confidence            3         34444443322222222222223333  3443 33333 677778865322111 11  33455666677


Q ss_pred             CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971          467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE  546 (721)
Q Consensus       467 dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~  546 (721)
                      ++ .++..+       .+..+++|.-+.       ..+.+..|...+.++++-|++.+|-+ ++   +..|.+|++++..
T Consensus       151 e~-~~vTgs-------aDKtIklWk~~~-------~l~tf~gHtD~VRgL~vl~~~~flSc-sN---Dg~Ir~w~~~ge~  211 (745)
T KOG0301|consen  151 EN-TYVTGS-------ADKTIKLWKGGT-------LLKTFSGHTDCVRGLAVLDDSHFLSC-SN---DGSIRLWDLDGEV  211 (745)
T ss_pred             CC-cEEecc-------CcceeeeccCCc-------hhhhhccchhheeeeEEecCCCeEee-cC---CceEEEEeccCce
Confidence            77 333332       578899987532       66777788888899999999876554 44   7899999996444


Q ss_pred             ccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971          547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS  626 (721)
Q Consensus       547 ~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~  626 (721)
                         +.+...+...+..++...+++.|+.++.+.       ++.+|+.+  ++.+.... ....++++.+-++|. |++.+
T Consensus       212 ---l~~~~ghtn~vYsis~~~~~~~Ivs~gEDr-------tlriW~~~--e~~q~I~l-PttsiWsa~~L~NgD-Ivvg~  277 (745)
T KOG0301|consen  212 ---LLEMHGHTNFVYSISMALSDGLIVSTGEDR-------TLRIWKKD--ECVQVITL-PTTSIWSAKVLLNGD-IVVGG  277 (745)
T ss_pred             ---eeeeeccceEEEEEEecCCCCeEEEecCCc-------eEEEeecC--ceEEEEec-CccceEEEEEeeCCC-EEEec
Confidence               777777776677788778888888888775       89999865  55555442 233566777766776 34444


Q ss_pred             ecC
Q 004971          627 DYG  629 (721)
Q Consensus       627 ~~~  629 (721)
                      .++
T Consensus       278 SDG  280 (745)
T KOG0301|consen  278 SDG  280 (745)
T ss_pred             cCc
Confidence            444

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.20  E-value=0.00068  Score=64.59  Aligned_cols=215  Identities=14%  Similarity=0.169  Sum_probs=135.3

Q ss_pred             eeeEEEEECCCCceEEee-cccCCCCcccCcEEcCCCCEEEEEEeeCC-CCCCCCcceeEEEeccCCCCc-----c---e
Q 004971          346 YRHIELFDLVKNKFIELT-RFVSPKTHHLNPFISPDSSRVGYHKCRGG-STREDGNNQLLLENIKSPLPD-----I---S  415 (721)
Q Consensus       346 ~~~l~l~dl~tg~~~~l~-~~~~~~~~~~~~~~Spdg~~l~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~-----~---~  415 (721)
                      +.++.+++++.+....+. .+..+.+.++.++-+|-.++|+.+..... ..+......||  .+..+...     +   .
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw--~ipe~~~~S~~~tlE~v~  116 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIW--QIPEPLGQSNSSTLECVA  116 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEE--ecccccCccccchhhHhh
Confidence            355777776655433332 23445677888889998877766544422 11111112333  33222111     1   1


Q ss_pred             ecc----cCCCCceeCcCCCEEEEEeCCcEEEEECCCCce--EEEe-e------cCceeeEEcC--CCCeEEEEecCCCC
Q 004971          416 LFR----FDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNR--RQVY-F------KNAFSTVWDP--VREAVVYTSGGPEF  480 (721)
Q Consensus       416 ~~~----~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~--~~l~-~------~~~~~~~~sp--dg~~la~~~~~~~~  480 (721)
                      ..+    +....+.|.|++.+++...+..|.+|+++.+..  ..+. .      ...+.-+|||  ||..++.++     
T Consensus       117 ~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-----  191 (370)
T KOG1007|consen  117 SLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-----  191 (370)
T ss_pred             cCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-----
Confidence            111    122457899999999999999999999986654  2222 1      1334678998  899998875     


Q ss_pred             CCCCCcEEEEEEEccCCCCccceEEcc-cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcC
Q 004971          481 ASESSEVDIISINVDDVDGVSAVRRLT-TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS  559 (721)
Q Consensus       481 ~~~~~~~~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~  559 (721)
                         +.++..|++....     +.-.+. .+...+..+.|.|+-+.+++....  +..|.+||...-+ ..+..+..+...
T Consensus       192 ---d~tl~~~D~RT~~-----~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gD--dgyvriWD~R~tk-~pv~el~~HsHW  260 (370)
T KOG1007|consen  192 ---DSTLQFWDLRTMK-----KNNSIEDAHGQRVRDLDFNPNKQHILVTCGD--DGYVRIWDTRKTK-FPVQELPGHSHW  260 (370)
T ss_pred             ---CCcEEEEEccchh-----hhcchhhhhcceeeeccCCCCceEEEEEcCC--CccEEEEeccCCC-ccccccCCCceE
Confidence               5778888877543     222222 244567888999998888877665  5578899987543 236677777777


Q ss_pred             ceeeEEccCCCEEEEEEcc
Q 004971          560 DTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       560 ~~~~~~SpDG~~l~~~~~~  578 (721)
                      +..+.|.|-=.+|+.+...
T Consensus       261 vW~VRfn~~hdqLiLs~~S  279 (370)
T KOG1007|consen  261 VWAVRFNPEHDQLILSGGS  279 (370)
T ss_pred             EEEEEecCccceEEEecCC
Confidence            8889999877677666554

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=98.19  E-value=0.0016  Score=73.57  Aligned_cols=286  Identities=21%  Similarity=0.211  Sum_probs=157.2

Q ss_pred             ccCceeecCCCCEEEEEEecC----CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCC
Q 004971          322 AFTPATSPGNNKFIAVATRRP----TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRED  397 (721)
Q Consensus       322 ~~~~~~sp~dG~~la~~~~~~----g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~  397 (721)
                      +..+.++| +++.+++.....    ......+++.|...  ...    .........+.|+|||+.+++....+...   
T Consensus        15 ~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~--~~~----~~~~~~~~~~~~spdg~~~~~~~~~~~~~---   84 (620)
T COG1506          15 VSDPRVSP-PGGRLAYILTGLDFLKPLYKSSLWVSDGKT--VRL----LTFGGGVSELRWSPDGSVLAFVSTDGGRV---   84 (620)
T ss_pred             ccCcccCC-CCceeEEeeccccccccccccceEEEeccc--ccc----cccCCcccccccCCCCCEEEEEeccCCCc---
Confidence            34567788 888888876531    12334577766544  111    22355667889999999999987343321   


Q ss_pred             CcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-------eC---------------------CcEEEEECCCC
Q 004971          398 GNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-------EF---------------------PGVYVVNSDGS  449 (721)
Q Consensus       398 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-------~~---------------------~~l~v~d~~~g  449 (721)
                        .++++.+.. +  .+...........|+|+|+.+++.       .+                     ..++++|..+ 
T Consensus        85 --~~l~l~~~~-g--~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~-  158 (620)
T COG1506          85 --AQLYLVDVG-G--LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES-  158 (620)
T ss_pred             --ceEEEEecC-C--ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCc-
Confidence              567777655 2  333334456668999999999884       01                     1233333322 


Q ss_pred             ceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEE-ccCCCCccceEEcccCCCCCcceEEccCCCEEE
Q 004971          450 NRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN-VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV  526 (721)
Q Consensus       450 ~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~  526 (721)
                      ....+.  ...+..+.+.++++.++.......   .+..+.-+.+. ...    ..+..++........+.|.+||+.++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~gk~~~  231 (620)
T COG1506         159 KLIKLGLGNLDVVSFATDGDGRLVASIRLDDD---ADPWVTNLYVLIEGN----GELESLTPGEGSISKLAFDADGKSIA  231 (620)
T ss_pred             ccccccCCCCceeeeeeCCCCceeEEeeeccc---cCCceEeeEEEecCC----CceEEEcCCCceeeeeeeCCCCCeeE
Confidence            111111  233445666666777776653211   11222222221 112    26666666666788899999999888


Q ss_pred             EEEeeCC-----ceeEEEEECCCCcccceEE-CcCCC--cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971          527 FRSTRTG-----YKNLYIMDAEGGEGYGLHR-LTEGP--WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL  598 (721)
Q Consensus       527 ~~s~~~g-----~~~l~~~d~~~g~~~~~~~-l~~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~  598 (721)
                      +......     ...+++++.+.++   ... +....  .......+.-++..+++...+.   .+...++..+..++..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~l~~~~~~~~~~  305 (620)
T COG1506         232 LLGTESDRGLAEGDFILLLDGELGE---VDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDG---GGSSPLFRVDDLGGGV  305 (620)
T ss_pred             EeccCCccCccccceEEEEeccccc---cceeeccCCcccCcHHhccccCCCcEEEEEecC---CCceEEEEEeccCCce
Confidence            8876543     2356666644444   222 11111  1112223334566666666652   1444555555434332


Q ss_pred             EEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEc
Q 004971          599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL  653 (721)
Q Consensus       599 ~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~  653 (721)
                      ..+.    ........|+.+|+.+++.......+             +++|+++.
T Consensus       306 ~~~~----~~~~~v~~f~~~~~~~~~~~s~~~~p-------------~~i~~~~~  343 (620)
T COG1506         306 EGLS----GDDGGVPGFDVDGRKLALAYSSPTEP-------------PEIYLYDR  343 (620)
T ss_pred             eeec----CCCceEEEEeeCCCEEEEEecCCCCc-------------cceEEEcC
Confidence            2222    12233455666999998877665543             57999987

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.15  E-value=0.00042  Score=66.06  Aligned_cols=219  Identities=15%  Similarity=0.089  Sum_probs=131.8

Q ss_pred             CCCceeCcCCC-EEEEEe--CCcEEEEECCCCce-EEEe--ecC--ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971          421 GSFPSFSPKGD-RIAFVE--FPGVYVVNSDGSNR-RQVY--FKN--AFSTVWDPVREAVVYTSGGPEFASESSEVDIISI  492 (721)
Q Consensus       421 ~~~~~~SpDG~-~la~~~--~~~l~v~d~~~g~~-~~l~--~~~--~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~  492 (721)
                      ...++++|--. .++|..  ..-.+++|..++.. +.+.  .+.  -..-.|||||++||.+.++  +....+-+-||+.
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd--fd~~rGViGvYd~  147 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND--FDPNRGVIGVYDA  147 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCC--CCCCCceEEEEec
Confidence            34467777654 456664  34567788887764 3333  222  2356899999999987643  4556677888888


Q ss_pred             EccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEee------CC---------ceeEEEEECCCCcccceEECc--C
Q 004971          493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR------TG---------YKNLYIMDAEGGEGYGLHRLT--E  555 (721)
Q Consensus       493 ~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~------~g---------~~~l~~~d~~~g~~~~~~~l~--~  555 (721)
                      ...-.    .+-.+..++-....+.|.+||+.|+.....      .+         ...|.++|..+|+.-+...|.  .
T Consensus       148 r~~fq----rvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l  223 (366)
T COG3490         148 REGFQ----RVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL  223 (366)
T ss_pred             ccccc----eecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh
Confidence            74322    344455555556778999999999987641      11         347888887788752222333  2


Q ss_pred             CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC------CCCCcCCeEECCCCCEEEEEEecC
Q 004971          556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG------SAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       556 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~------~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      ....+.++...+||+.++-+...+.. +...-|.-.-..+ +..+.....      ....+.+++..-+-.+++.++.++
T Consensus       224 ~~lSiRHld~g~dgtvwfgcQy~G~~-~d~ppLvg~~~~g-~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~G  301 (366)
T COG3490         224 RQLSIRHLDIGRDGTVWFGCQYRGPR-NDLPPLVGHFRKG-EPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRG  301 (366)
T ss_pred             hhcceeeeeeCCCCcEEEEEEeeCCC-ccCCcceeeccCC-CcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCC
Confidence            23456788999999855544444321 1222233233333 333322211      123456677777777777777666


Q ss_pred             CCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      +                ...+||+++|.+.....
T Consensus       302 N----------------~~vi~da~tG~vv~~a~  319 (366)
T COG3490         302 N----------------RAVIWDAATGAVVSEAA  319 (366)
T ss_pred             C----------------eEEEEEcCCCcEEeccc
Confidence            4                38899999998765543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.14  E-value=0.0002  Score=74.27  Aligned_cols=258  Identities=9%  Similarity=0.019  Sum_probs=151.0

Q ss_pred             CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcc-eeccc-CCCCceeCcCCCEEEEEeCCcEEEEEC
Q 004971          369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI-SLFRF-DGSFPSFSPKGDRIAFVEFPGVYVVNS  446 (721)
Q Consensus       369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~-~~~~~~~SpDG~~la~~~~~~l~v~d~  446 (721)
                      ......+..||||++++.+..-.        ..|.++++..-...+ ..... .+.+.-+|.|=+.+++.....-.-+..
T Consensus        51 p~ast~ik~s~DGqY~lAtG~YK--------P~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa  122 (703)
T KOG2321|consen   51 PTASTRIKVSPDGQYLLATGTYK--------PQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA  122 (703)
T ss_pred             ccccceeEecCCCcEEEEecccC--------CceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehh
Confidence            44456688999999998754333        345555554321111 11111 122334555655666653332222333


Q ss_pred             CCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEE
Q 004971          447 DGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI  525 (721)
Q Consensus       447 ~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l  525 (721)
                      ..|....+. +....++.++.-..-|+++.         ....||++++..+   .-+..+....+....+..++-...|
T Consensus       123 k~G~hy~~RIP~~GRDm~y~~~scDly~~g---------sg~evYRlNLEqG---rfL~P~~~~~~~lN~v~in~~hgLl  190 (703)
T KOG2321|consen  123 KYGRHYRTRIPKFGRDMKYHKPSCDLYLVG---------SGSEVYRLNLEQG---RFLNPFETDSGELNVVSINEEHGLL  190 (703)
T ss_pred             hcCeeeeeecCcCCccccccCCCccEEEee---------cCcceEEEEcccc---ccccccccccccceeeeecCccceE
Confidence            344332222 33445566655444555554         3467889988764   2344444444567778888888888


Q ss_pred             EEEEeeCCceeEEEEECCCCcccceEECc------CCCc-----CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971          526 VFRSTRTGYKNLYIMDAEGGEGYGLHRLT------EGPW-----SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN  594 (721)
Q Consensus       526 ~~~s~~~g~~~l~~~d~~~g~~~~~~~l~------~~~~-----~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~  594 (721)
                      ++...   +..+-.||....+.  +..|.      ..++     .++.+.|+-||-.++++...+       .+|+||+.
T Consensus       191 a~Gt~---~g~VEfwDpR~ksr--v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G-------~v~iyDLR  258 (703)
T KOG2321|consen  191 ACGTE---DGVVEFWDPRDKSR--VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG-------SVLIYDLR  258 (703)
T ss_pred             Eeccc---CceEEEecchhhhh--heeeecccccCCCccccccCcceEEEecCCceeEEeeccCC-------cEEEEEcc
Confidence            88876   67888899877654  22221      2222     268899999999999998876       89999999


Q ss_pred             CCceEEeeecCCCCCcCCeEECCC--CCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCce
Q 004971          595 GTGLRKLIQSGSAGRANHPYFSPD--GKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPA  672 (721)
Q Consensus       595 ~~~~~~l~~~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~  672 (721)
                      +.++..+-.....-.+..+.|-+.  +..|+..  +..                -+.+||..+|+.-..........+.|
T Consensus       259 a~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~--Dk~----------------~~kiWd~~~Gk~~asiEpt~~lND~C  320 (703)
T KOG2321|consen  259 ASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM--DKR----------------ILKIWDECTGKPMASIEPTSDLNDFC  320 (703)
T ss_pred             cCCceeecccCCccceeeecccccCCCceEEec--chH----------------HhhhcccccCCceeeccccCCcCcee
Confidence            887665543222233456677554  3444433  322                27788987776543333344467778


Q ss_pred             ecCC
Q 004971          673 WGPR  676 (721)
Q Consensus       673 ~sp~  676 (721)
                      +-|+
T Consensus       321 ~~p~  324 (703)
T KOG2321|consen  321 FVPG  324 (703)
T ss_pred             eecC
Confidence            8775

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=98.11  E-value=0.0001  Score=72.53  Aligned_cols=156  Identities=13%  Similarity=0.119  Sum_probs=108.1

Q ss_pred             cCCCCceeCc--CCCEEEEE-eCCcEEEEECCCCceEE----Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEE
Q 004971          419 FDGSFPSFSP--KGDRIAFV-EFPGVYVVNSDGSNRRQ----VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDI  489 (721)
Q Consensus       419 ~~~~~~~~Sp--DG~~la~~-~~~~l~v~d~~~g~~~~----l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i  489 (721)
                      ..+..+.|||  .|+ |+.. ....|++|...+|..+.    +.  ...+..+.|||.-+.+++.+      .-++.++|
T Consensus       212 ~EGy~LdWSp~~~g~-LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaSc------S~DgsIrI  284 (440)
T KOG0302|consen  212 GEGYGLDWSPIKTGR-LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASC------SCDGSIRI  284 (440)
T ss_pred             ccceeeecccccccc-cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEee------ecCceEEE
Confidence            3466789998  232 3332 36789999988776432    22  45677899999998888877      36899999


Q ss_pred             EEEEccCCCCccceEEc-ccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc-cceEECcCCCcCceeeEEcc
Q 004971          490 ISINVDDVDGVSAVRRL-TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG-YGLHRLTEGPWSDTMCNWSP  567 (721)
Q Consensus       490 ~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~-~~~~~l~~~~~~~~~~~~Sp  567 (721)
                      |++.....    +...+ ..+...+..+.|+.+-..|++..+   +..+.+||+..-+. ..+..+..+...++.+.|+|
T Consensus       285 WDiRs~~~----~~~~~~kAh~sDVNVISWnr~~~lLasG~D---dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p  357 (440)
T KOG0302|consen  285 WDIRSGPK----KAAVSTKAHNSDVNVISWNRREPLLASGGD---DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHP  357 (440)
T ss_pred             EEecCCCc----cceeEeeccCCceeeEEccCCcceeeecCC---CceEEEEEhhhccCCCcceeEEeccCCeeEEEecc
Confidence            99987642    22222 345566777899988887777776   77899999875332 12556667778889999999


Q ss_pred             CCCEE-EEEEccCCCCCCceeEEEEecCC
Q 004971          568 DGEWI-AFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       568 DG~~l-~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      ....+ +.++.+.       +|-+||+.-
T Consensus       358 ~e~s~iaasg~D~-------QitiWDlsv  379 (440)
T KOG0302|consen  358 HEDSVIAASGEDN-------QITIWDLSV  379 (440)
T ss_pred             ccCceEEeccCCC-------cEEEEEeec
Confidence            76544 4444443       899999854

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=98.11  E-value=0.016  Score=62.70  Aligned_cols=260  Identities=12%  Similarity=0.092  Sum_probs=150.8

Q ss_pred             ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe------CCcEEEEE
Q 004971          372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE------FPGVYVVN  445 (721)
Q Consensus       372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~------~~~l~v~d  445 (721)
                      ...+..|||.+.++++.+..+...    ..+.+.++.++..............+|.+|++.+.|+.      ...|+...
T Consensus       131 Lg~~~~s~D~~~la~s~D~~G~e~----y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~  206 (682)
T COG1770         131 LGAASISPDHNLLAYSVDVLGDEQ----YTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR  206 (682)
T ss_pred             eeeeeeCCCCceEEEEEecccccE----EEEEEEecccccccchhhcccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence            567889999999999776655321    45677777776443333333355679999999999983      24577777


Q ss_pred             CCC--CceEEEee--cC--ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEc
Q 004971          446 SDG--SNRRQVYF--KN--AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVS  519 (721)
Q Consensus       446 ~~~--g~~~~l~~--~~--~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S  519 (721)
                      +.+  ..-+.|..  ..  -..+.-+...++|++...      +..+.+++.++.+...  ...+.+.... ........
T Consensus       207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~------~~~tsE~~ll~a~~p~--~~p~vv~pr~-~g~eY~~e  277 (682)
T COG1770         207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLG------SHITSEVRLLDADDPE--AEPKVVLPRE-NGVEYSVE  277 (682)
T ss_pred             cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcC------CCcceeEEEEecCCCC--CceEEEEEcC-CCcEEeee
Confidence            766  44455551  11  223445667777777652      3344556666554421  1334333322 11112222


Q ss_pred             cCCCEEEEEEeeCC-ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971          520 PDGKWIVFRSTRTG-YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL  598 (721)
Q Consensus       520 pDg~~l~~~s~~~g-~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~  598 (721)
                      .-|.++++.++..+ +..|+...+...+ ..-+.+..+.....--.++-=.++|+....+.    +-..|++++..+++.
T Consensus       278 h~~d~f~i~sN~~gknf~l~~ap~~~~~-~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~----glp~v~v~~~~~~~~  352 (682)
T COG1770         278 HGGDRFYILSNADGKNFKLVRAPVSADK-SNWRELIPHREDVRLEGVDLFADHLVLLERQE----GLPRVVVRDRKTGEE  352 (682)
T ss_pred             ecCcEEEEEecCCCcceEEEEccCCCCh-hcCeeeeccCCCceeeeeeeeccEEEEEeccc----CCceEEEEecCCCce
Confidence            34778888888776 5577766551111 11233444443334445555667888887764    667899999988877


Q ss_pred             EEeeecCCCCCcCCeEECC--CCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          599 RKLIQSGSAGRANHPYFSP--DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       599 ~~l~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      ..+... ..........++  +...|-+.-..-+.             +.+++-+|+.+++.+.|.+
T Consensus       353 ~~i~f~-~~ay~~~l~~~~e~~s~~lR~~ysS~tt-------------P~~~~~~dm~t~er~~Lkq  405 (682)
T COG1770         353 RGIAFD-DEAYSAGLSGNPEFDSDRLRYSYSSMTT-------------PATLFDYDMATGERTLLKQ  405 (682)
T ss_pred             eeEEec-chhhhccccCCCCCCCccEEEEeecccc-------------cceeEEeeccCCcEEEEEe
Confidence            765432 122222222222  23344443332222             3579999999998887776

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.11  E-value=0.0014  Score=76.74  Aligned_cols=188  Identities=16%  Similarity=0.262  Sum_probs=117.3

Q ss_pred             ceeCcCCCEEEEE-eCCcEEEE----ECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc--
Q 004971          424 PSFSPKGDRIAFV-EFPGVYVV----NSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV--  494 (721)
Q Consensus       424 ~~~SpDG~~la~~-~~~~l~v~----d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~--  494 (721)
                      +.+-+|...++++ ..+.|.++    +........+.  +.++..++||||+..|++++..       +++-+...+.  
T Consensus        81 ~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~-------~~l~~mt~~fd~  153 (928)
T PF04762_consen   81 FQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGE-------GNLLLMTRDFDP  153 (928)
T ss_pred             EEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCC-------CEEEEEeccceE
Confidence            4556666666666 57888888    55555554444  6789999999999999999732       2222221111  


Q ss_pred             ------cCCC---------Cccc-eEE-------------------------cccCCCCCcceEEccCCCEEEEEEe--e
Q 004971          495 ------DDVD---------GVSA-VRR-------------------------LTTNGKNNAFPSVSPDGKWIVFRST--R  531 (721)
Q Consensus       495 ------~~~~---------~~~~-~~~-------------------------l~~~~~~~~~~~~SpDg~~l~~~s~--~  531 (721)
                            ...+         ++++ .++                         +. .......++|=.||+++|+.+-  .
T Consensus       154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~  232 (928)
T PF04762_consen  154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPE  232 (928)
T ss_pred             EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcC
Confidence                  1000         0000 001                         11 1113344689999999999876  3


Q ss_pred             CC-ceeEEEEECCCCcccceEECcCC-CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec--CCC
Q 004971          532 TG-YKNLYIMDAEGGEGYGLHRLTEG-PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS--GSA  607 (721)
Q Consensus       532 ~g-~~~l~~~d~~~g~~~~~~~l~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~--~~~  607 (721)
                      .+ .+.|.+|+-+ |+   +.-..+. .+-...++|-|.|..||......    +...|-.+.-+|-+-......  ...
T Consensus       233 ~~~~R~iRVy~Re-G~---L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~----~~~~VvFfErNGLrhgeF~l~~~~~~  304 (928)
T PF04762_consen  233 TGSRRVIRVYSRE-GE---LQSTSEPVDGLEGALSWRPSGNLIASSQRLP----DRHDVVFFERNGLRHGEFTLRFDPEE  304 (928)
T ss_pred             CCceeEEEEECCC-ce---EEeccccCCCccCCccCCCCCCEEEEEEEcC----CCcEEEEEecCCcEeeeEecCCCCCC
Confidence            34 5789999887 55   3333322 22235789999999999888643    556788888666443332211  134


Q ss_pred             CCcCCeEECCCCCEEEEEEe
Q 004971          608 GRANHPYFSPDGKSIVFTSD  627 (721)
Q Consensus       608 ~~~~~~~~SpDG~~l~~~~~  627 (721)
                      ..+..+.|++|+..|++.-.
T Consensus       305 ~~v~~l~Wn~ds~iLAv~~~  324 (928)
T PF04762_consen  305 EKVIELAWNSDSEILAVWLE  324 (928)
T ss_pred             ceeeEEEECCCCCEEEEEec
Confidence            56788999999999988664

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.11  E-value=0.0019  Score=61.77  Aligned_cols=209  Identities=13%  Similarity=0.094  Sum_probs=119.5

Q ss_pred             ccCCC-CCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEE-eccCC----cceeccCCeEEEEeccCC---CCcE
Q 004971          222 AVSPS-GKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKI-VENGG----WPCWVDESTLFFHRKSEE---DDWI  292 (721)
Q Consensus       222 ~~SPD-G~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~-~~~~~----~~~ws~dg~l~~~~~~~~---~g~~  292 (721)
                      +++|- .+-++|+. +.+          .-.+++|..++...++. ...+.    +-.||+||+++|+..++.   .|.+
T Consensus        74 ~~~p~~~ravafAR-rPG----------tf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGVi  142 (366)
T COG3490          74 AFHPALPRAVAFAR-RPG----------TFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVI  142 (366)
T ss_pred             ecCCCCcceEEEEe-cCC----------ceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceE
Confidence            67774 45666764 333          46677888777655544 33332    459999999877654433   3566


Q ss_pred             EEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEe------cCC-------CCeeeEEEEECCCCce
Q 004971          293 SVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATR------RPT-------SSYRHIELFDLVKNKF  359 (721)
Q Consensus       293 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~------~~g-------~~~~~l~l~dl~tg~~  359 (721)
                      -||+..  .+.      .+.-....++...+.+.+.+ ||+.|+.+.-      .-+       .-..++.++|..+|+.
T Consensus       143 GvYd~r--~~f------qrvgE~~t~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~l  213 (366)
T COG3490         143 GVYDAR--EGF------QRVGEFSTHGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNL  213 (366)
T ss_pred             EEEecc--ccc------ceecccccCCcCcceeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccch
Confidence            778544  211      24444556677778999999 9999988642      001       1234678888888874


Q ss_pred             EEeeccc--CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccC----------CCCceeC
Q 004971          360 IELTRFV--SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFD----------GSFPSFS  427 (721)
Q Consensus       360 ~~l~~~~--~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~S  427 (721)
                      .+-....  ...-.+..++..+||+.++-+...+.....   ..+.-...++.  .+......          ...++..
T Consensus       214 iekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~---ppLvg~~~~g~--~l~~~~~pee~~~~~anYigsiA~n  288 (366)
T COG3490         214 IEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDL---PPLVGHFRKGE--PLEFLDLPEEQTAAFANYIGSIAAN  288 (366)
T ss_pred             hhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccC---CcceeeccCCC--cCcccCCCHHHHHHHHhhhhheeec
Confidence            3322221  234457788999999766655555543211   11111111121  11111111          1134555


Q ss_pred             cCCCEEEEEe--CCcEEEEECCCCceEEEe
Q 004971          428 PKGDRIAFVE--FPGVYVVNSDGSNRRQVY  455 (721)
Q Consensus       428 pDG~~la~~~--~~~l~v~d~~~g~~~~l~  455 (721)
                      .+...++.++  .+...+||.++|......
T Consensus       289 ~~~glV~lTSP~GN~~vi~da~tG~vv~~a  318 (366)
T COG3490         289 RRDGLVALTSPRGNRAVIWDAATGAVVSEA  318 (366)
T ss_pred             ccCCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence            5455666663  567889999999865443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=98.09  E-value=0.00021  Score=69.19  Aligned_cols=237  Identities=12%  Similarity=0.087  Sum_probs=128.7

Q ss_pred             ceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEee-cccCCCCcccCcEEcCCCCEEEEEEe
Q 004971          311 SIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELT-RFVSPKTHHLNPFISPDSSRVGYHKC  389 (721)
Q Consensus       311 ~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~-~~~~~~~~~~~~~~Spdg~~l~~~~~  389 (721)
                      -...+-+++..+..+.+.| +.-.++...    +.+..|++||+.+.....+. ..++|...+..+.|+++|.+|+....
T Consensus       127 ~~~~~~ghG~sINeik~~p-~~~qlvls~----SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGm  201 (385)
T KOG1034|consen  127 CSKNYRGHGGSINEIKFHP-DRPQLVLSA----SKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGM  201 (385)
T ss_pred             hccceeccCccchhhhcCC-CCCcEEEEe----cCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCC
Confidence            3444566777888999999 775555532    35667999999998865553 44567777889999999999887655


Q ss_pred             eCCCCCCCCcceeEEEeccCCC--CcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe---ecCceeeEE
Q 004971          390 RGGSTREDGNNQLLLENIKSPL--PDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY---FKNAFSTVW  464 (721)
Q Consensus       390 ~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~---~~~~~~~~~  464 (721)
                      +-.         |-++.+..+.  ..+      .....|+|++...-|... .....+..+.....-.   ......+.+
T Consensus       202 Dhs---------lk~W~l~~~~f~~~l------E~s~~~~~~~t~~pfpt~-~~~fp~fst~diHrnyVDCvrw~gd~il  265 (385)
T KOG1034|consen  202 DHS---------LKLWRLNVKEFKNKL------ELSITYSPNKTTRPFPTP-KTHFPDFSTTDIHRNYVDCVRWFGDFIL  265 (385)
T ss_pred             cce---------EEEEecChhHHhhhh------hhhcccCCCCccCcCCcc-ccccccccccccccchHHHHHHHhhhee
Confidence            544         4444444221  111      112456666654333210 0111111111000000   000112222


Q ss_pred             cCCCCeEEEEecCCCCCCCCCcEEEEEE-EccCC-----CCccceEEcccCC---CCCc--ceEEccCCCEEEEEEeeCC
Q 004971          465 DPVREAVVYTSGGPEFASESSEVDIISI-NVDDV-----DGVSAVRRLTTNG---KNNA--FPSVSPDGKWIVFRSTRTG  533 (721)
Q Consensus       465 spdg~~la~~~~~~~~~~~~~~~~i~~~-~~~~~-----~~~~~~~~l~~~~---~~~~--~~~~SpDg~~l~~~s~~~g  533 (721)
                      |..+               ++.+..|.. .....     -.......+....   ....  ..+|.|=++.||....   
T Consensus       266 Sksc---------------enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq---  327 (385)
T KOG1034|consen  266 SKSC---------------ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ---  327 (385)
T ss_pred             eccc---------------CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC---
Confidence            2111               122223322 11000     0000111111111   1122  2466677888887776   


Q ss_pred             ceeEEEEECCCCcccceEECcCC--CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971          534 YKNLYIMDAEGGEGYGLHRLTEG--PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       534 ~~~l~~~d~~~g~~~~~~~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                      ...+|+||++..++....+++..  ...+...+||-||..|++..++.       .|++||.
T Consensus       328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~-------~Vwrwdr  382 (385)
T KOG1034|consen  328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDG-------TVWRWDR  382 (385)
T ss_pred             CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCC-------cEEEEEe
Confidence            67899999998775333444432  34567899999999999888875       8999985

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.08  E-value=0.0051  Score=65.82  Aligned_cols=267  Identities=18%  Similarity=0.214  Sum_probs=153.1

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCc--eEEeecccCCCCcccCcEE-cCCCCEEEEEEeeCCCCCCC
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNK--FIELTRFVSPKTHHLNPFI-SPDSSRVGYHKCRGGSTRED  397 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~--~~~l~~~~~~~~~~~~~~~-Spdg~~l~~~~~~~~~~~~~  397 (721)
                      .+....+.+ ++..++...     .+..+.+|+...+.  ...+...  ....+....+ ++++..++.......     
T Consensus        67 ~i~~~~~~~-~~~~~~~~~-----~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d-----  133 (466)
T COG2319          67 SITSIAFSP-DGELLLSGS-----SDGTIKLWDLDNGEKLIKSLEGL--HDSSVSKLALSSPDGNSILLASSSLD-----  133 (466)
T ss_pred             eEEEEEECC-CCcEEEEec-----CCCcEEEEEcCCCceeEEEEecc--CCCceeeEEEECCCcceEEeccCCCC-----
Confidence            445667777 777666543     34458899987764  2222211  1123334444 777773333222212     


Q ss_pred             CcceeEEEeccC--C-CCcceecccCCCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe---ecCceeeEEcCCCC
Q 004971          398 GNNQLLLENIKS--P-LPDISLFRFDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVRE  469 (721)
Q Consensus       398 ~~~~l~~~~~~~--~-~~~~~~~~~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~  469 (721)
                        ..+.+++...  . ...+.........+.|+|+++.++...  +..+.+|++..+......   ...+..+.|+|++.
T Consensus       134 --~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  211 (466)
T COG2319         134 --GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG  211 (466)
T ss_pred             --ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc
Confidence              2344444443  1 111111222233579999999766664  788999999875544433   35678899999998


Q ss_pred             eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceE-EcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc
Q 004971          470 AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVR-RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY  548 (721)
Q Consensus       470 ~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~  548 (721)
                      .++...      ..++.+.+|+..  ..   .... .+..+.... ...|+|++..++..+.   +..+.+|+...... 
T Consensus       212 ~~~~~~------~~d~~i~~wd~~--~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~-  275 (466)
T COG2319         212 LLIASG------SSDGTIRLWDLS--TG---KLLRSTLSGHSDSV-VSSFSPDGSLLASGSS---DGTIRLWDLRSSSS-  275 (466)
T ss_pred             eEEEEe------cCCCcEEEEECC--CC---cEEeeecCCCCcce-eEeECCCCCEEEEecC---CCcEEEeeecCCCc-
Confidence            444442      256778888443  21   1222 244443332 2389999977774444   67888998876552 


Q ss_pred             ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee-cCCCCCcCCeEECCCCCEEEEE
Q 004971          549 GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ-SGSAGRANHPYFSPDGKSIVFT  625 (721)
Q Consensus       549 ~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~~~SpDG~~l~~~  625 (721)
                      ....+..+...+....|+|++..++....+.       .+.+|+..+........ ..+...+..+.|++++..++..
T Consensus       276 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (466)
T COG2319         276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDG-------TVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG  346 (466)
T ss_pred             EEEEEecCCccEEEEEECCCCCEEEEeeCCC-------cEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEe
Confidence            1222223345567789999998888854442       47778887776444432 1244446677774443555555

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.07  E-value=0.00097  Score=63.65  Aligned_cols=263  Identities=11%  Similarity=0.068  Sum_probs=147.4

Q ss_pred             CCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeec--CCCCCccccccCCCCC-----EEEEEecCCCCCCcccceee
Q 004971          176 GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLT--PYGVADFSPAVSPSGK-----YTAVASYGNKGWDGEVEMLS  248 (721)
Q Consensus       176 g~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt--~~~~~~~~p~~SPDG~-----~la~~~~~~~~w~~~~~~~~  248 (721)
                      +.+|+..+-.+...+    ..+|..++.++++.....  +++.......|.||.+     .||..+            ..
T Consensus        59 ~~rla~gS~~Ee~~N----kvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~------------D~  122 (364)
T KOG0290|consen   59 KFRLAVGSFIEEYNN----KVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS------------DF  122 (364)
T ss_pred             ceeEEEeeeccccCC----eeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc------------Ce
Confidence            445665543333222    256777777777665432  4555555557888753     455533            12


Q ss_pred             eeEEEEEcCCCceeEE---EeccCC---cc----eecc-CCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCC
Q 004971          249 TDIYIFLTRDGTQRVK---IVENGG---WP----CWVD-ESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP  317 (721)
Q Consensus       249 ~~i~~~d~~~g~~~~l---~~~~~~---~~----~ws~-dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~  317 (721)
                      -.||.+..+.++....   ..+...   .|    .|.. |-+++-  .+.-+.+..||.+.....+      -...++..
T Consensus       123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~ig--tSSiDTTCTiWdie~~~~~------~vkTQLIA  194 (364)
T KOG0290|consen  123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIG--TSSIDTTCTIWDIETGVSG------TVKTQLIA  194 (364)
T ss_pred             EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeE--eecccCeEEEEEEeecccc------ceeeEEEe
Confidence            3455554433332211   111111   22    4552 223333  2333678889987654211      14567777


Q ss_pred             CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCC--CCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971          318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSP--KTHHLNPFISPDSSRVGYHKCRGGSTR  395 (721)
Q Consensus       318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~--~~~~~~~~~Spdg~~l~~~~~~~~~~~  395 (721)
                      |.-.+..++|+. ++..++....    .++.++++|+..-+...+.. +.+  ......++|++..-.++.+-..+.   
T Consensus       195 HDKEV~DIaf~~-~s~~~FASvg----aDGSvRmFDLR~leHSTIIY-E~p~~~~pLlRLswnkqDpnymATf~~dS---  265 (364)
T KOG0290|consen  195 HDKEVYDIAFLK-GSRDVFASVG----ADGSVRMFDLRSLEHSTIIY-EDPSPSTPLLRLSWNKQDPNYMATFAMDS---  265 (364)
T ss_pred             cCcceeEEEecc-CccceEEEec----CCCcEEEEEecccccceEEe-cCCCCCCcceeeccCcCCchHHhhhhcCC---
Confidence            877889999998 8876654332    45669999998766444432 222  223344566655433322222222   


Q ss_pred             CCCcceeEEEeccCCC---CcceecccCCCCceeCcCCCE-EEEE-eCCcEEEEECCCCceEE----Ee----ecCceee
Q 004971          396 EDGNNQLLLENIKSPL---PDISLFRFDGSFPSFSPKGDR-IAFV-EFPGVYVVNSDGSNRRQ----VY----FKNAFST  462 (721)
Q Consensus       396 ~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~SpDG~~-la~~-~~~~l~v~d~~~g~~~~----l~----~~~~~~~  462 (721)
                          .++.+.+++-+.   .++......+..++|.|..+. |..+ .+.+.-+||+..-....    +.    .+.+..+
T Consensus       266 ----~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi  341 (364)
T KOG0290|consen  266 ----NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQI  341 (364)
T ss_pred             ----ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeee
Confidence                456777776553   344445566778899997654 5554 47788999997532211    11    5678899


Q ss_pred             EEcC-CCCeEEEEe
Q 004971          463 VWDP-VREAVVYTS  475 (721)
Q Consensus       463 ~~sp-dg~~la~~~  475 (721)
                      .|++ .+.+++++.
T Consensus       342 ~Ws~~~~Dwiai~~  355 (364)
T KOG0290|consen  342 QWSSSQPDWIAICF  355 (364)
T ss_pred             eecccCCCEEEEEe
Confidence            9995 577888775

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=98.07  E-value=0.0021  Score=63.71  Aligned_cols=191  Identities=17%  Similarity=0.160  Sum_probs=106.4

Q ss_pred             cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEE-ECCC
Q 004971          371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVV-NSDG  448 (721)
Q Consensus       371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~-d~~~  448 (721)
                      ....+++|+||+.+++.....+.      ..++.....+....+. .......|.|+++|...++.. .....++ +...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~------~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~   97 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGG------RSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS   97 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCC------CEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence            56789999999999998732221      4567766544433222 223455689999976555543 3333333 3334


Q ss_pred             CceEE--Ee---e-cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC---CccceEEcccC-CCCCcceEE
Q 004971          449 SNRRQ--VY---F-KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD---GVSAVRRLTTN-GKNNAFPSV  518 (721)
Q Consensus       449 g~~~~--l~---~-~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~l~~~-~~~~~~~~~  518 (721)
                      +....  +.   . +.+..+.+||||.++++....    ...+++.|-.+..+...   .......+... ......+.|
T Consensus        98 g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~----~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W  173 (253)
T PF10647_consen   98 GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVED----GGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW  173 (253)
T ss_pred             CcceeEEecccccCCceEEEEECCCCcEEEEEEec----CCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence            44333  33   1 267899999999999999742    13466666666655431   00111122211 235567899


Q ss_pred             ccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEE
Q 004971          519 SPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS  576 (721)
Q Consensus       519 SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~  576 (721)
                      .++++.++.....++.... .+..+++.   ...+..........+...+...++...
T Consensus       174 ~~~~~L~V~~~~~~~~~~~-~v~~dG~~---~~~l~~~~~~~~v~a~~~~~~~~~~t~  227 (253)
T PF10647_consen  174 SDDSTLVVLGRSAGGPVVR-LVSVDGGP---STPLPSVNLGVPVVAVAASPSTVYVTD  227 (253)
T ss_pred             cCCCEEEEEeCCCCCceeE-EEEccCCc---ccccCCCCCCcceEEeeCCCcEEEEEC
Confidence            9999866665543332222 46777665   445533333223344444444444333

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=98.04  E-value=0.00025  Score=74.58  Aligned_cols=220  Identities=13%  Similarity=0.121  Sum_probs=138.8

Q ss_pred             CCceeCcCCCEE-EEE-eCCcEEEEECCCCceEEE--e---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971          422 SFPSFSPKGDRI-AFV-EFPGVYVVNSDGSNRRQV--Y---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV  494 (721)
Q Consensus       422 ~~~~~SpDG~~l-a~~-~~~~l~v~d~~~g~~~~l--~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~  494 (721)
                      ..+.|.| |+.. +.. ++..+..||+++++..-.  .   .+.+..++|.|+..-++++.      ..++.+.||++..
T Consensus       104 fDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tG------gRDg~illWD~R~  176 (720)
T KOG0321|consen  104 FDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTG------GRDGEILLWDCRC  176 (720)
T ss_pred             EeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeec------cCCCcEEEEEEec
Confidence            3468899 5544 444 688999999998875433  2   56677899999998888776      3689999999987


Q ss_pred             cCCC---------------CccceEEccc-------CCCCCcc---eEEccCCCEEEEEEeeCCceeEEEEECCCCcc--
Q 004971          495 DDVD---------------GVSAVRRLTT-------NGKNNAF---PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG--  547 (721)
Q Consensus       495 ~~~~---------------~~~~~~~l~~-------~~~~~~~---~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~--  547 (721)
                      .+.+               +......+..       ....+..   ..+..|...|+..+.  .+..|.+||+.....  
T Consensus       177 n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga--~D~~iKVWDLRk~~~~~  254 (720)
T KOG0321|consen  177 NGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA--ADSTIKVWDLRKNYTAY  254 (720)
T ss_pred             cchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccC--CCcceEEEeeccccccc
Confidence            6521               0001111111       1112222   456678888887765  467899999975432  


Q ss_pred             ----cceEECcCC---CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCC-----cCCeEE
Q 004971          548 ----YGLHRLTEG---PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR-----ANHPYF  615 (721)
Q Consensus       548 ----~~~~~l~~~---~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~-----~~~~~~  615 (721)
                          .....+..+   ...+..+....-|.+|+....+.       .||.|++.+-....+..  ..+.     ..--..
T Consensus       255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~-------sIy~ynm~s~s~sP~~~--~sg~~~~sf~vks~l  325 (720)
T KOG0321|consen  255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN-------SIYFYNMRSLSISPVAE--FSGKLNSSFYVKSEL  325 (720)
T ss_pred             ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC-------cEEEEeccccCcCchhh--ccCcccceeeeeeec
Confidence                001111111   12234566666689998887775       89999997754443322  1111     112346


Q ss_pred             CCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC--CeEEeccCCCCCCCceecCC
Q 004971          616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS--DLKRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       616 SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~lt~~~~~~~~~~~sp~  676 (721)
                      |||+.+|+..+.+.                 +.|+|.++.-  .+..+..|...+...+|.|.
T Consensus       326 Spd~~~l~SgSsd~-----------------~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS  371 (720)
T KOG0321|consen  326 SPDDCSLLSGSSDE-----------------QAYIWVVSSPEAPPALLLGHTREVTTVRWLPS  371 (720)
T ss_pred             CCCCceEeccCCCc-----------------ceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence            99999998877765                 3677776664  34667777777888899884

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=98.03  E-value=0.001  Score=72.75  Aligned_cols=253  Identities=12%  Similarity=0.029  Sum_probs=144.7

Q ss_pred             CCcEEEEEEecCCCcceeccccceEE-eCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC
Q 004971          289 DDWISVYKVILPQTGLVSTESVSIQR-VTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS  367 (721)
Q Consensus       289 ~g~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~  367 (721)
                      +..+.+|......         .... +.++...+..+++.. -+.+++.     |+.+..+++||..+|+.....  .+
T Consensus       227 ~~tl~~~~~~~~~---------~i~~~l~GH~g~V~~l~~~~-~~~~lvs-----gS~D~t~rvWd~~sg~C~~~l--~g  289 (537)
T KOG0274|consen  227 DSTLHLWDLNNGY---------LILTRLVGHFGGVWGLAFPS-GGDKLVS-----GSTDKTERVWDCSTGECTHSL--QG  289 (537)
T ss_pred             CceeEEeecccce---------EEEeeccCCCCCceeEEEec-CCCEEEE-----EecCCcEEeEecCCCcEEEEe--cC
Confidence            5666777432221         2333 566666777788854 3666665     335667999999999865554  23


Q ss_pred             CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec---ccCCCCceeCcCCCEEEEEe-CCcEEE
Q 004971          368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF---RFDGSFPSFSPKGDRIAFVE-FPGVYV  443 (721)
Q Consensus       368 ~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~SpDG~~la~~~-~~~l~v  443 (721)
                      +...+..+  +-....++..+.+         ..+.++++..+.. +...   ...+.  +..-++..++..+ ++.|.+
T Consensus       290 h~stv~~~--~~~~~~~~sgs~D---------~tVkVW~v~n~~~-l~l~~~h~~~V~--~v~~~~~~lvsgs~d~~v~V  355 (537)
T KOG0274|consen  290 HTSSVRCL--TIDPFLLVSGSRD---------NTVKVWDVTNGAC-LNLLRGHTGPVN--CVQLDEPLLVSGSYDGTVKV  355 (537)
T ss_pred             CCceEEEE--EccCceEeeccCC---------ceEEEEeccCcce-EEEeccccccEE--EEEecCCEEEEEecCceEEE
Confidence            33333222  2223333322222         2355555554421 1111   11222  2333466666664 668999


Q ss_pred             EECCCCceE-EEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc
Q 004971          444 VNSDGSNRR-QVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP  520 (721)
Q Consensus       444 ~d~~~g~~~-~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp  520 (721)
                      |++..++.. .+.  .+.+..+.+.+. ..++-.+       .++.+++|++.....    ....+..+...+  .....
T Consensus       356 W~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs-------~D~~IkvWdl~~~~~----c~~tl~~h~~~v--~~l~~  421 (537)
T KOG0274|consen  356 WDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS-------LDTTIKVWDLRTKRK----CIHTLQGHTSLV--SSLLL  421 (537)
T ss_pred             EEhhhceeeeeecCCcceEEEEEecCc-ceEEeee-------eccceEeecCCchhh----hhhhhcCCcccc--ccccc
Confidence            999977743 333  344555555443 6666655       468899999876521    445555555433  33445


Q ss_pred             CCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971          521 DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR  599 (721)
Q Consensus       521 Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~  599 (721)
                      .++.|+..+.   +..|.+||..+++.  +..+.. +...+..+.+.  ...++....+.       .+.+||+..++..
T Consensus       422 ~~~~Lvs~~a---D~~Ik~WD~~~~~~--~~~~~~~~~~~v~~l~~~--~~~il~s~~~~-------~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  422 RDNFLVSSSA---DGTIKLWDAEEGEC--LRTLEGRHVGGVSALALG--KEEILCSSDDG-------SVKLWDLRSGTLI  487 (537)
T ss_pred             ccceeEeccc---cccEEEeecccCce--eeeeccCCcccEEEeecC--cceEEEEecCC-------eeEEEecccCchh
Confidence            5777877776   67899999999885  555554 23445555554  23444444443       7899999888755


Q ss_pred             E
Q 004971          600 K  600 (721)
Q Consensus       600 ~  600 (721)
                      +
T Consensus       488 ~  488 (537)
T KOG0274|consen  488 R  488 (537)
T ss_pred             h
Confidence            4

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.0073  Score=63.98  Aligned_cols=246  Identities=15%  Similarity=0.139  Sum_probs=151.1

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      ....+...| +|..+++.....  .  .+...+............  ......+.+.++++.+++....+..        
T Consensus        32 ~~~~v~~~~-~g~~~~v~~~~~--~--~~~~~~~~~n~~~~~~~~--g~~~p~~i~v~~~~~~vyv~~~~~~--------   96 (381)
T COG3391          32 GPGGVAVNP-DGTQVYVANSGS--N--DVSVIDATSNTVTQSLSV--GGVYPAGVAVNPAGNKVYVTTGDSN--------   96 (381)
T ss_pred             CCceeEEcC-ccCEEEEEeecC--c--eeeecccccceeeeeccC--CCccccceeeCCCCCeEEEecCCCC--------
Confidence            345667788 887777654332  1  356665553222221111  1134557789999998877654432        


Q ss_pred             eeEEEeccCCC-CcceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEE-Ee-ecCceeeEEcCCCCeEEE
Q 004971          401 QLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQ-VY-FKNAFSTVWDPVREAVVY  473 (721)
Q Consensus       401 ~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~-l~-~~~~~~~~~spdg~~la~  473 (721)
                      .+...+..... ............++++|+++.+++..    ...+.+.|..++.... +. ......++++|+|++++.
T Consensus        97 ~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv  176 (381)
T COG3391          97 TVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYV  176 (381)
T ss_pred             eEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEE
Confidence            34444432221 11111122455689999999988883    3678888887776433 33 223578999999999998


Q ss_pred             EecCCCCCCCCCcEEEEEEEccCCCCccceEE-----cccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc
Q 004971          474 TSGGPEFASESSEVDIISINVDDVDGVSAVRR-----LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY  548 (721)
Q Consensus       474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~  548 (721)
                      +..      .++.+.+..  ....    ...+     ............++|||++++.....+.+..+.++|..++.. 
T Consensus       177 ~~~------~~~~v~vi~--~~~~----~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v-  243 (381)
T COG3391         177 TNS------DDNTVSVID--TSGN----SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV-  243 (381)
T ss_pred             Eec------CCCeEEEEe--CCCc----ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE-
Confidence            852      344455444  3332    2222     111123556789999999999888754446899999998873 


Q ss_pred             ceEEC--cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971          549 GLHRL--TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI  602 (721)
Q Consensus       549 ~~~~l--~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  602 (721)
                        ...  ............+|+|+.+++.....      ..+++.|..+.......
T Consensus       244 --~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~------~~V~vid~~~~~v~~~~  291 (381)
T COG3391         244 --TATDLPVGSGAPRGVAVDPAGKAAYVANSQG------GTVSVIDGATDRVVKTG  291 (381)
T ss_pred             --EEeccccccCCCCceeECCCCCEEEEEecCC------CeEEEEeCCCCceeeee
Confidence              332  22221345789999999988886653      37999998887665544

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.00  E-value=0.0023  Score=61.14  Aligned_cols=234  Identities=11%  Similarity=0.061  Sum_probs=141.0

Q ss_pred             CCCCCcccCceeecCCCC-----EEEEEEecCCCCeeeEEEEECCC--CceEEeecc-----cCCCCcccCcEEcCC-CC
Q 004971          316 TPPGLHAFTPATSPGNNK-----FIAVATRRPTSSYRHIELFDLVK--NKFIELTRF-----VSPKTHHLNPFISPD-SS  382 (721)
Q Consensus       316 ~~~~~~~~~~~~sp~dG~-----~la~~~~~~g~~~~~l~l~dl~t--g~~~~l~~~-----~~~~~~~~~~~~Spd-g~  382 (721)
                      +++.+.+..+.|.| |.+     .||..       ...|++|.+..  .+......+     .........+.|..- -+
T Consensus        93 fd~~YP~tK~~wiP-d~~g~~pdlLATs-------~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~  164 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIP-DSKGVYPDLLATS-------SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN  164 (364)
T ss_pred             CCCCCCccceEecC-CccccCcchhhcc-------cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc
Confidence            45667777888998 764     23331       12377777653  222111111     112233556677653 34


Q ss_pred             EEEEEEeeCCCCCCCCcceeEEEeccCC-----CCcceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe
Q 004971          383 RVGYHKCRGGSTREDGNNQLLLENIKSP-----LPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY  455 (721)
Q Consensus       383 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~  455 (721)
                      +|...+.+..       -.+  +++..+     .+++.....++..++|+.+|..+...  .++.+.++|+..-+...|.
T Consensus       165 ~igtSSiDTT-------CTi--Wdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII  235 (364)
T KOG0290|consen  165 LIGTSSIDTT-------CTI--WDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII  235 (364)
T ss_pred             eeEeecccCe-------EEE--EEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE
Confidence            5555444444       333  444433     23445556667778999877655443  4899999999877754444


Q ss_pred             -e-----cCceeeEEcCCCC-eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEE
Q 004971          456 -F-----KNAFSTVWDPVRE-AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFR  528 (721)
Q Consensus       456 -~-----~~~~~~~~spdg~-~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~  528 (721)
                       .     .....++|++..- ++|...      -+..++.|.++.....    .+.+|..|...+...+|.|-.+.-++.
T Consensus       236 YE~p~~~~pLlRLswnkqDpnymATf~------~dS~~V~iLDiR~P~t----pva~L~~H~a~VNgIaWaPhS~~hict  305 (364)
T KOG0290|consen  236 YEDPSPSTPLLRLSWNKQDPNYMATFA------MDSNKVVILDIRVPCT----PVARLRNHQASVNGIAWAPHSSSHICT  305 (364)
T ss_pred             ecCCCCCCcceeeccCcCCchHHhhhh------cCCceEEEEEecCCCc----ceehhhcCcccccceEecCCCCceeee
Confidence             2     2334677776543 344322      2467788888887775    788899999999999999987655544


Q ss_pred             EeeCCceeEEEEECCCCcc-cceEEC--cCCCcCceeeEEcc-CCCEEEEEEcc
Q 004971          529 STRTGYKNLYIMDAEGGEG-YGLHRL--TEGPWSDTMCNWSP-DGEWIAFASDR  578 (721)
Q Consensus       529 s~~~g~~~l~~~d~~~g~~-~~~~~l--~~~~~~~~~~~~Sp-DG~~l~~~~~~  578 (721)
                      ...  +.+..+||+..--. .....+  ......++.+.|+| .+.||+++.+.
T Consensus       306 aGD--D~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  306 AGD--DCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             cCC--cceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecC
Confidence            432  67888999875321 001111  12345678999995 46799988875

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=97.99  E-value=0.0036  Score=66.93  Aligned_cols=178  Identities=20%  Similarity=0.249  Sum_probs=115.1

Q ss_pred             CcCCCEEEEE--e-CCcEEEEECCC-Cc-eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971          427 SPKGDRIAFV--E-FPGVYVVNSDG-SN-RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG  499 (721)
Q Consensus       427 SpDG~~la~~--~-~~~l~v~d~~~-g~-~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~  499 (721)
                      ++++..++..  . +..+.+|+..+ .. ...+.  ...+..+.|+|+++.++....      .++.+.+|.+....   
T Consensus       119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---  189 (466)
T COG2319         119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS------LDGTIKLWDLRTGK---  189 (466)
T ss_pred             CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC------CCCceEEEEcCCCc---
Confidence            7778733333  2 66899999987 33 33333  456678999999996666531      36788888876522   


Q ss_pred             ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE-ECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971          500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH-RLTEGPWSDTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       500 ~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~  578 (721)
                        ....+..+...+...+|+|+++.++.....  +..|.+||...+..  .. .+..+.... ...|+|++..++....+
T Consensus       190 --~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--d~~i~~wd~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d  262 (466)
T COG2319         190 --PLSTLAGHTDPVSSLAFSPDGGLLIASGSS--DGTIRLWDLSTGKL--LRSTLSGHSDSV-VSSFSPDGSLLASGSSD  262 (466)
T ss_pred             --eEEeeccCCCceEEEEEcCCcceEEEEecC--CCcEEEEECCCCcE--EeeecCCCCcce-eEeECCCCCEEEEecCC
Confidence              444555556678889999999844444122  56677888776553  33 244333322 22799999777755555


Q ss_pred             CCCCCCceeEEEEecCCCce-EEeeecCCCCCcCCeEECCCCCEEEEEEec
Q 004971          579 DNPGSGSFEMYLIHPNGTGL-RKLIQSGSAGRANHPYFSPDGKSIVFTSDY  628 (721)
Q Consensus       579 ~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~  628 (721)
                      .       .+.+|++..... .... ..+...+....|+|++..++..+.+
T Consensus       263 ~-------~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d  305 (466)
T COG2319         263 G-------TIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSD  305 (466)
T ss_pred             C-------cEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCC
Confidence            3       799999876653 2222 2355667788999999988875544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=97.92  E-value=0.0012  Score=70.33  Aligned_cols=209  Identities=9%  Similarity=-0.017  Sum_probs=129.4

Q ss_pred             CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCC
Q 004971          343 TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGS  422 (721)
Q Consensus       343 g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  422 (721)
                      |+.+..+.+|.+.+.+  .+..+.+|...+.+.....++. |+..+.+..       ..+|..  ..-...+..+...+.
T Consensus        77 g~~D~~i~v~~~~~~~--P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~T-------akvW~~--~~l~~~l~gH~asVW  144 (745)
T KOG0301|consen   77 GGMDTTIIVFKLSQAE--PLYTLKGHKSNVCSLSIGEDGT-LISGSWDST-------AKVWRI--GELVYSLQGHTASVW  144 (745)
T ss_pred             ecccceEEEEecCCCC--chhhhhccccceeeeecCCcCc-eEecccccc-------eEEecc--hhhhcccCCcchhee
Confidence            3455668899988776  5555667777787777777776 666665555       344432  111111121222233


Q ss_pred             CceeCcCCCEEEEEeCCcEEEEECCCCce-EEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971          423 FPSFSPKGDRIAFVEFPGVYVVNSDGSNR-RQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG  499 (721)
Q Consensus       423 ~~~~SpDG~~la~~~~~~l~v~d~~~g~~-~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~  499 (721)
                      .+..-|++.++--..+..|++|.-  ++. +.+.  ...++.+++-+++.+|-..        .++.+++|.++.  .  
T Consensus       145 Av~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScs--------NDg~Ir~w~~~g--e--  210 (745)
T KOG0301|consen  145 AVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCS--------NDGSIRLWDLDG--E--  210 (745)
T ss_pred             eeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeec--------CCceEEEEeccC--c--
Confidence            334456664333335888999964  333 2332  4567788888887666443        578899998843  2  


Q ss_pred             ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971          500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD  579 (721)
Q Consensus       500 ~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~  579 (721)
                        .+.+...+...++.....+++..|+..++   +++|.+|+..  +.  ...++-....++...+-++|. |+++..++
T Consensus       211 --~l~~~~ghtn~vYsis~~~~~~~Ivs~gE---DrtlriW~~~--e~--~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG  280 (745)
T KOG0301|consen  211 --VLLEMHGHTNFVYSISMALSDGLIVSTGE---DRTLRIWKKD--EC--VQVITLPTTSIWSAKVLLNGD-IVVGGSDG  280 (745)
T ss_pred             --eeeeeeccceEEEEEEecCCCCeEEEecC---CceEEEeecC--ce--EEEEecCccceEEEEEeeCCC-EEEeccCc
Confidence              56666666666777777778888887777   7899999876  43  333443333556777777887 66666664


Q ss_pred             CCCCCceeEEEEecC
Q 004971          580 NPGSGSFEMYLIHPN  594 (721)
Q Consensus       580 ~~~~~~~~i~~~d~~  594 (721)
                             .||+|..+
T Consensus       281 -------~VrVfT~~  288 (745)
T KOG0301|consen  281 -------RVRVFTVD  288 (745)
T ss_pred             -------eEEEEEec
Confidence                   67776654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.91  E-value=1.8e-05  Score=83.97  Aligned_cols=149  Identities=20%  Similarity=0.203  Sum_probs=107.8

Q ss_pred             ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCce
Q 004971          456 FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK  535 (721)
Q Consensus       456 ~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~  535 (721)
                      ...+..+.|+++...|+..+       .++.+++|++....     .++.|+.+......+.|+|-|.+.+-.+.   +.
T Consensus        70 espIeSl~f~~~E~Llaags-------asgtiK~wDleeAk-----~vrtLtgh~~~~~sv~f~P~~~~~a~gSt---dt  134 (825)
T KOG0267|consen   70 ESPIESLTFDTSERLLAAGS-------ASGTIKVWDLEEAK-----IVRTLTGHLLNITSVDFHPYGEFFASGST---DT  134 (825)
T ss_pred             CCcceeeecCcchhhhcccc-------cCCceeeeehhhhh-----hhhhhhccccCcceeeeccceEEeccccc---cc
Confidence            34566777877777776654       57899999998654     67788888877888899999998865554   67


Q ss_pred             eEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEE
Q 004971          536 NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF  615 (721)
Q Consensus       536 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~  615 (721)
                      ++.+||.....+  ......+.+.+..+.|+|||+|++....+.       .+.+||+..|+...-+.. +.+.+..+.|
T Consensus       135 d~~iwD~Rk~Gc--~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~-------tvki~d~~agk~~~ef~~-~e~~v~sle~  204 (825)
T KOG0267|consen  135 DLKIWDIRKKGC--SHTYKSHTRVVDVLRLSPDGRWVASGGEDN-------TVKIWDLTAGKLSKEFKS-HEGKVQSLEF  204 (825)
T ss_pred             cceehhhhccCc--eeeecCCcceeEEEeecCCCceeeccCCcc-------eeeeeccccccccccccc-cccccccccc
Confidence            899999874332  444445666677899999999998887764       899999988776544443 5666777777


Q ss_pred             CCCCCEEEEEEecC
Q 004971          616 SPDGKSIVFTSDYG  629 (721)
Q Consensus       616 SpDG~~l~~~~~~~  629 (721)
                      .|-.-.++-.+.+.
T Consensus       205 hp~e~Lla~Gs~d~  218 (825)
T KOG0267|consen  205 HPLEVLLAPGSSDR  218 (825)
T ss_pred             CchhhhhccCCCCc
Confidence            77655444444443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.91  E-value=0.0038  Score=60.56  Aligned_cols=154  Identities=18%  Similarity=0.233  Sum_probs=100.8

Q ss_pred             CCCCceeCcCCCEEEEEeCCcEEEEECCCCc--eEEEe--ecCceeeEEcCCC--CeEEEEecCCCCCCCCCcEEEEEEE
Q 004971          420 DGSFPSFSPKGDRIAFVEFPGVYVVNSDGSN--RRQVY--FKNAFSTVWDPVR--EAVVYTSGGPEFASESSEVDIISIN  493 (721)
Q Consensus       420 ~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~--~~~l~--~~~~~~~~~spdg--~~la~~~~~~~~~~~~~~~~i~~~~  493 (721)
                      ....+.+++  .+|+++-...|++|.....-  ...+.  ...-.-.+..|..  ..|+|-+      ..-+.++|.++.
T Consensus        96 ~I~~V~l~r--~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg------~k~GqvQi~dL~  167 (346)
T KOG2111|consen   96 EIKAVKLRR--DRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG------FKTGQVQIVDLA  167 (346)
T ss_pred             ceeeEEEcC--CeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC------CccceEEEEEhh
Confidence            344556664  47888889999999886332  22222  1111233444433  3344322      234777777776


Q ss_pred             ccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC--CcCceeeEEccCCCE
Q 004971          494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG--PWSDTMCNWSPDGEW  571 (721)
Q Consensus       494 ~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~--~~~~~~~~~SpDG~~  571 (721)
                      ....   +.+..+..|...+.-++.+-+|..||.++..  ..=|++||..+|+.  +..+-.+  ...+..++||||+++
T Consensus       168 ~~~~---~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStk--GTLIRIFdt~~g~~--l~E~RRG~d~A~iy~iaFSp~~s~  240 (346)
T KOG2111|consen  168 STKP---NAPSIINAHDSDIACVALNLQGTLVATASTK--GTLIRIFDTEDGTL--LQELRRGVDRADIYCIAFSPNSSW  240 (346)
T ss_pred             hcCc---CCceEEEcccCceeEEEEcCCccEEEEeccC--cEEEEEEEcCCCcE--eeeeecCCchheEEEEEeCCCccE
Confidence            5432   2346677788788889999999999999873  34688899999986  5555443  335678999999999


Q ss_pred             EEEEEccCCCCCCceeEEEEecCC
Q 004971          572 IAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       572 l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      |+++++.+       +|.++.+..
T Consensus       241 LavsSdKg-------TlHiF~l~~  257 (346)
T KOG2111|consen  241 LAVSSDKG-------TLHIFSLRD  257 (346)
T ss_pred             EEEEcCCC-------eEEEEEeec
Confidence            99999874       555555533

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=97.91  E-value=0.0011  Score=74.02  Aligned_cols=242  Identities=15%  Similarity=0.180  Sum_probs=130.5

Q ss_pred             EEEEEecCCCCCCCCCccceEEEEeCCCcceEee-cCCCCCccccccCCCCCEEEE-EecCC--CCCCcccceeeeeEEE
Q 004971          178 YLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRL-TPYGVADFSPAVSPSGKYTAV-ASYGN--KGWDGEVEMLSTDIYI  253 (721)
Q Consensus       178 ~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~l-t~~~~~~~~p~~SPDG~~la~-~~~~~--~~w~~~~~~~~~~i~~  253 (721)
                      +|+|+.+..+         +|...|.++..++.+ +........|.|||||++||| ++..+  +         ...||+
T Consensus       320 kiAfv~~~~~---------~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g---------~s~vYv  381 (912)
T TIGR02171       320 KLAFRNDVTG---------NLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPG---------KSSVYV  381 (912)
T ss_pred             eEEEEEcCCC---------eEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCC---------CceEEE
Confidence            4888876432         899999999999988 777888899999999999999 55544  3         467999


Q ss_pred             EEcCCCc--eeEEEeccCCcceec--cCCe--EEEEeccC---CCCc---EEEEEEecCCCcceeccccceEEeCCCCCc
Q 004971          254 FLTRDGT--QRVKIVENGGWPCWV--DEST--LFFHRKSE---EDDW---ISVYKVILPQTGLVSTESVSIQRVTPPGLH  321 (721)
Q Consensus       254 ~d~~~g~--~~~l~~~~~~~~~ws--~dg~--l~~~~~~~---~~g~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (721)
                      .++.+..  ..+|-.+....|.|.  .+|.  |.|.....   .+..   ..-|.+.-..++     +++++++....+ 
T Consensus       382 ~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gk-----fg~p~kl~dga~-  455 (912)
T TIGR02171       382 RNLNASGSGLVKLPVENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGK-----FGTPKKLFDGAY-  455 (912)
T ss_pred             EehhccCCCceEeecccccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCC-----CCCchhhhcccc-
Confidence            9987644  344444555688887  4443  54422111   0111   234655554443     468888876543 


Q ss_pred             ccCceeecCCCCEEEEEEecCCCCeeeEEEE--ECCCCceEEeecccCCCCcccCcEEcCCCC-EEEEEEeeCCCC----
Q 004971          322 AFTPATSPGNNKFIAVATRRPTSSYRHIELF--DLVKNKFIELTRFVSPKTHHLNPFISPDSS-RVGYHKCRGGST----  394 (721)
Q Consensus       322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~--dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~----  394 (721)
                        +--+|. |.+ +++...+.    -+.++.  ++.+++...--.    +....+..++.||. +-+|....+...    
T Consensus       456 --hggvs~-~~~-lavtga~l----lr~~~~~~~~~~~~~~vwyn----~eqacn~sl~~d~~~rt~fldfgg~tg~~fv  523 (912)
T TIGR02171       456 --HGGVSE-DLN-LAVSGARL----LRAHVANEDVDNGKDDVWYN----GEQACNASLAKDGSKRTLFLDFGGSTGQAFV  523 (912)
T ss_pred             --cccccc-CCc-eeeehhhH----hhhhhcccccccCccceeec----chhccchhhhccCCcceEEEecCCccchhhc
Confidence              222344 554 44322111    112222  223333211111    22344566766763 444544333211    


Q ss_pred             C--CCCcceeEEEeccCCCCcceecccC--CCCceeCcCCCEEEEE-------eCCcEEEEECCCCceEEEe
Q 004971          395 R--EDGNNQLLLENIKSPLPDISLFRFD--GSFPSFSPKGDRIAFV-------EFPGVYVVNSDGSNRRQVY  455 (721)
Q Consensus       395 ~--~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~SpDG~~la~~-------~~~~l~v~d~~~g~~~~l~  455 (721)
                      +  .....++.+.|-.+...+-...+..  -.+..|-.+.+.++++       ....|.++++..++...|.
T Consensus       524 g~~y~~he~~lvads~gklv~~v~ap~gytfdh~ew~~~~~~~~vatl~n~~g~h~ki~lv~~~~~~i~~l~  595 (912)
T TIGR02171       524 GQKYGVHERLLVADSKGKLVRAVAAPAGYTFDHTEWVTGRSNLAVATLTNVNGAHKKIALINLSDSKVTELV  595 (912)
T ss_pred             cccccceeEEEEecCCCchhhhccCCCCccccchhhhcCCCceEEEEeecCCCccceEEEEEcCCCceEEee
Confidence            1  1122456666655442211111100  0122354433344443       2567999999988877776

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.90  E-value=0.0088  Score=60.63  Aligned_cols=288  Identities=11%  Similarity=0.022  Sum_probs=163.8

Q ss_pred             CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEE-------cCCCCEEEEEEeeCCCCCC
Q 004971          324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFI-------SPDSSRVGYHKCRGGSTRE  396 (721)
Q Consensus       324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~-------Spdg~~l~~~~~~~~~~~~  396 (721)
                      ...+-| +...|+.+....+-..-.+|+|+-.......-+...- .....+..|       ...|++++....+..    
T Consensus       130 e~~V~p-sDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~il-pafPLC~ewld~~~~~~~~gNyvAiGtmdp~----  203 (463)
T KOG0270|consen  130 EEQVKP-SDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFIL-PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPE----  203 (463)
T ss_pred             cceecc-CCcEEEEeeccCCceEEEEEEEcCCCcceeEecceec-cCcchhhhhhhcCCCCCCCcceEEEeccCce----
Confidence            455666 6666666655555556667888765433211110000 111112222       123567777666655    


Q ss_pred             CCcceeEEEeccCCCCcceecc----------------c-----CCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEE
Q 004971          397 DGNNQLLLENIKSPLPDISLFR----------------F-----DGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQ  453 (721)
Q Consensus       397 ~~~~~l~~~~~~~~~~~~~~~~----------------~-----~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~  453 (721)
                         ..||-.++.....+...+.                .     .+-.+.|..+-+.|.+.  .+..|.+||+++|++..
T Consensus       204 ---IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~  280 (463)
T KOG0270|consen  204 ---IEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS  280 (463)
T ss_pred             ---eEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce
Confidence               3455444433322211111                0     00134555555555554  37899999999999876


Q ss_pred             Ee---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEe
Q 004971          454 VY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRST  530 (721)
Q Consensus       454 l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~  530 (721)
                      +.   .+.+..+.|.|....+....      ..++.+.|++....+.    ....+.. .+.+-.++|.|-....++.+.
T Consensus       281 s~~~~~k~Vq~l~wh~~~p~~LLsG------s~D~~V~l~D~R~~~~----s~~~wk~-~g~VEkv~w~~~se~~f~~~t  349 (463)
T KOG0270|consen  281 SITHHGKKVQTLEWHPYEPSVLLSG------SYDGTVALKDCRDPSN----SGKEWKF-DGEVEKVAWDPHSENSFFVST  349 (463)
T ss_pred             ehhhcCCceeEEEecCCCceEEEec------cccceEEeeeccCccc----cCceEEe-ccceEEEEecCCCceeEEEec
Confidence            65   56788999999776666554      3578888888764221    1122222 235566889888877777765


Q ss_pred             eCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec-CCCCC
Q 004971          531 RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS-GSAGR  609 (721)
Q Consensus       531 ~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~  609 (721)
                      .  ++.||-+|..... +.+..+-.+...+..+.+++.-..++.+....      ..+.+|++.....+.+-.. ..-+.
T Consensus       350 d--dG~v~~~D~R~~~-~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d------~~Vklw~~~~~~~~~v~~~~~~~~r  420 (463)
T KOG0270|consen  350 D--DGTVYYFDIRNPG-KPVWTLKAHDDEISGLSVNIQTPGLLSTASTD------KVVKLWKFDVDSPKSVKEHSFKLGR  420 (463)
T ss_pred             C--CceEEeeecCCCC-CceeEEEeccCCcceEEecCCCCcceeecccc------ceEEEEeecCCCCcccccccccccc
Confidence            4  5679999987542 23667777777888999988766655554322      3778887765544322210 01123


Q ss_pred             cCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971          610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       610 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~  656 (721)
                      ..+.++-|+-..++..+...+                .+.+||+.+.
T Consensus       421 l~c~~~~~~~a~~la~GG~k~----------------~~~vwd~~~~  451 (463)
T KOG0270|consen  421 LHCFALDPDVAFTLAFGGEKA----------------VLRVWDIFTN  451 (463)
T ss_pred             eeecccCCCcceEEEecCccc----------------eEEEeecccC
Confidence            455666777655444443332                3778887654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.89  E-value=0.038  Score=58.75  Aligned_cols=293  Identities=13%  Similarity=0.097  Sum_probs=135.8

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcce-EeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeee
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT-RRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLST  249 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~-~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~  249 (721)
                      +|.+++++|++.+..+          .|+.++..+|+. .+..........|..  ++..+++...            ..
T Consensus        60 ~p~v~~~~v~v~~~~g----------~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~------------~g  115 (377)
T TIGR03300        60 QPAVAGGKVYAADADG----------TVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTE------------KG  115 (377)
T ss_pred             ceEEECCEEEEECCCC----------eEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcC------------CC
Confidence            5666788777655432          799999876664 343222222233333  5666666432            25


Q ss_pred             eEEEEEcCCCceeEEEeccCC---cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCC-----c
Q 004971          250 DIYIFLTRDGTQRVKIVENGG---WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGL-----H  321 (721)
Q Consensus       250 ~i~~~d~~~g~~~~l~~~~~~---~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  321 (721)
                      .||.+|.++|+..--....+.   .|.. .++++++.  . .++.  ++.++...+.       ...+......     .
T Consensus       116 ~l~ald~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~--~-~~g~--l~a~d~~tG~-------~~W~~~~~~~~~~~~~  182 (377)
T TIGR03300       116 EVIALDAEDGKELWRAKLSSEVLSPPLV-ANGLVVVR--T-NDGR--LTALDAATGE-------RLWTYSRVTPALTLRG  182 (377)
T ss_pred             EEEEEECCCCcEeeeeccCceeecCCEE-ECCEEEEE--C-CCCe--EEEEEcCCCc-------eeeEEccCCCceeecC
Confidence            799999988885432211111   2222 23455552  1 1333  3322322222       2222211110     0


Q ss_pred             ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCC---------cccCcEEcCCCCEEEEEEeeCC
Q 004971          322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKT---------HHLNPFISPDSSRVGYHKCRGG  392 (721)
Q Consensus       322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~---------~~~~~~~Spdg~~l~~~~~~~~  392 (721)
                      ...+.+ . + ..+++..     .+..++.+|+++|+..--........         ....+.+.  +..+++....+ 
T Consensus       183 ~~sp~~-~-~-~~v~~~~-----~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~~~vy~~~~~g-  251 (377)
T TIGR03300       183 SASPVI-A-D-GGVLVGF-----AGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--GGQVYAVSYQG-  251 (377)
T ss_pred             CCCCEE-E-C-CEEEEEC-----CCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE--CCEEEEEEcCC-
Confidence            122333 2 3 3454422     23358899998887432111110000         01123332  44666544332 


Q ss_pred             CCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe----ecCceeeEEcCC
Q 004971          393 STREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY----FKNAFSTVWDPV  467 (721)
Q Consensus       393 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~----~~~~~~~~~spd  467 (721)
                              .++..+..++.............+.  .++.+|++. .++.|+.+|..+|+...-.    ......+..  .
T Consensus       252 --------~l~a~d~~tG~~~W~~~~~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~  319 (377)
T TIGR03300       252 --------RVAALDLRSGRVLWKRDASSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--V  319 (377)
T ss_pred             --------EEEEEECCCCcEEEeeccCCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--E
Confidence                    2555555544221111111111222  345566666 4788999999888754222    111222333  4


Q ss_pred             CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEE
Q 004971          468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIM  540 (721)
Q Consensus       468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~  540 (721)
                      +..|++.+       .++.  |+.++..++   ....++..+. .....|.+..  ..|++.+.   +..||.+
T Consensus       320 g~~l~~~~-------~~G~--l~~~d~~tG---~~~~~~~~~~~~~~~sp~~~~--~~l~v~~~---dG~l~~~  376 (377)
T TIGR03300       320 GGYLVVGD-------FEGY--LHWLSREDG---SFVARLKTDGSGIASPPVVVG--DGLLVQTR---DGDLYAF  376 (377)
T ss_pred             CCEEEEEe-------CCCE--EEEEECCCC---CEEEEEEcCCCccccCCEEEC--CEEEEEeC---CceEEEe
Confidence            56777664       3444  444444432   1333443333 2344555543  34776665   5667654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=97.88  E-value=0.00069  Score=62.92  Aligned_cols=219  Identities=11%  Similarity=-0.027  Sum_probs=116.8

Q ss_pred             ceeCcCCCEEEEE-eCCcEEEEECCC---C------ceEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEE
Q 004971          424 PSFSPKGDRIAFV-EFPGVYVVNSDG---S------NRRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDI  489 (721)
Q Consensus       424 ~~~SpDG~~la~~-~~~~l~v~d~~~---g------~~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i  489 (721)
                      -+|||.+++++.. ..++|.+..+.+   +      +...++    ++.+..++|.  .+.|+..        .++.++=
T Consensus        16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~--------gdG~V~g   85 (325)
T KOG0649|consen   16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG--------GDGLVYG   85 (325)
T ss_pred             HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec--------cCceEEE
Confidence            4889999887776 477888887653   1      112222    4555666665  2334333        2455555


Q ss_pred             EEEEccCCC-Ccc------ceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCc
Q 004971          490 ISINVDDVD-GVS------AVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSD  560 (721)
Q Consensus       490 ~~~~~~~~~-~~~------~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~  560 (721)
                      |........ ...      .+.+....+ -.+..+...|....|+++..   +..||.||+++|+   +++.. .+...+
T Consensus        86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG---D~~~y~~dlE~G~---i~r~~rGHtDYv  159 (325)
T KOG0649|consen   86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG---DGVIYQVDLEDGR---IQREYRGHTDYV  159 (325)
T ss_pred             eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC---CeEEEEEEecCCE---EEEEEcCCccee
Confidence            555432110 000      000110111 13455667788888888874   8999999999999   44444 454445


Q ss_pred             eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCC
Q 004971          561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPH  640 (721)
Q Consensus       561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~  640 (721)
                      ..++--.-..+|+.++.++       .+.+||..+++..+....-.......|.   .|++|-....+...- -+..   
T Consensus       160 H~vv~R~~~~qilsG~EDG-------tvRvWd~kt~k~v~~ie~yk~~~~lRp~---~g~wigala~~edWl-vCGg---  225 (325)
T KOG0649|consen  160 HSVVGRNANGQILSGAEDG-------TVRVWDTKTQKHVSMIEPYKNPNLLRPD---WGKWIGALAVNEDWL-VCGG---  225 (325)
T ss_pred             eeeeecccCcceeecCCCc-------cEEEEeccccceeEEeccccChhhcCcc---cCceeEEEeccCceE-EecC---
Confidence            5555522334577777775       8999999999887765421111111111   244443332221100 0000   


Q ss_pred             CCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971          641 QYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       641 ~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~  676 (721)
                          -+.+-+|.+...+.+++..-...+....|--+
T Consensus       226 ----Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d  257 (325)
T KOG0649|consen  226 ----GPKLSLWHLRSSESTCVFPIPARVHLVDFVDD  257 (325)
T ss_pred             ----CCceeEEeccCCCceEEEecccceeEeeeecc
Confidence                01367777777776666554444555555443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=0.0014  Score=65.10  Aligned_cols=194  Identities=10%  Similarity=0.051  Sum_probs=126.4

Q ss_pred             CCCEEEEEeCCcEEEEECCC-----CceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccc
Q 004971          429 KGDRIAFVEFPGVYVVNSDG-----SNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA  502 (721)
Q Consensus       429 DG~~la~~~~~~l~v~d~~~-----g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  502 (721)
                      ||..+...+.+.+.+|....     .....+. ......+.-.+....++.... .   ..-....||++.....  .-.
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GG-k---e~~n~lkiwdle~~~q--iw~  188 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGG-K---ENINELKIWDLEQSKQ--IWS  188 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCc-h---hcccceeeeeccccee--eee
Confidence            46555555788899988873     3344444 333444555555555554321 0   1235677888765320  000


Q ss_pred             eEEcccCC------CCCcceEEccC--CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEE
Q 004971          503 VRRLTTNG------KNNAFPSVSPD--GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF  574 (721)
Q Consensus       503 ~~~l~~~~------~~~~~~~~SpD--g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~  574 (721)
                      .+.+....      -......|-++  ...++..+.   ..++.+||...++ +++..+......+.+....|+|+.|++
T Consensus       189 aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~---~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~  264 (412)
T KOG3881|consen  189 AKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITR---YHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYT  264 (412)
T ss_pred             ccCCCCccccceeeeeeccceecCCCCCceEEEEec---ceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEE
Confidence            01111111      12344577776  777777776   7899999998655 456667666677788999999999988


Q ss_pred             EEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971          575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD  654 (721)
Q Consensus       575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  654 (721)
                      +....       +|..+|..+++.......+..+.+.++...|.+++|+..+-+.                 .|.++|++
T Consensus       265 gn~~g-------~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDR-----------------yvRIhD~k  320 (412)
T KOG3881|consen  265 GNTKG-------QLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDR-----------------YVRIHDIK  320 (412)
T ss_pred             ecccc-------hhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccce-----------------eEEEeecc
Confidence            88775       8999999998765553334567889999999999998877654                 38888888


Q ss_pred             CC
Q 004971          655 GS  656 (721)
Q Consensus       655 ~~  656 (721)
                      +.
T Consensus       321 tr  322 (412)
T KOG3881|consen  321 TR  322 (412)
T ss_pred             cc
Confidence            73

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.85  E-value=0.041  Score=58.53  Aligned_cols=94  Identities=12%  Similarity=0.138  Sum_probs=55.6

Q ss_pred             cCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971          520 PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL  598 (721)
Q Consensus       520 pDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~  598 (721)
                      .++.+|++.+.   +..|+.+|..+|+.  +-.... .......|..  .|..|++...++       .|+.+|..+|+.
T Consensus       277 ~~~~~vyv~~~---~G~l~~~d~~tG~~--~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G-------~l~~~d~~tG~~  342 (377)
T TIGR03300       277 VDDNRLYVTDA---DGVVVALDRRSGSE--LWKNDELKYRQLTAPAV--VGGYLVVGDFEG-------YLHWLSREDGSF  342 (377)
T ss_pred             EeCCEEEEECC---CCeEEEEECCCCcE--EEccccccCCccccCEE--ECCEEEEEeCCC-------EEEEEECCCCCE
Confidence            35677777764   67899999998873  222211 1112233443  466787777664       899999988876


Q ss_pred             EEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       599 ~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      .--...........|.+. ++ .|++.+.++
T Consensus       343 ~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG  371 (377)
T TIGR03300       343 VARLKTDGSGIASPPVVV-GD-GLLVQTRDG  371 (377)
T ss_pred             EEEEEcCCCccccCCEEE-CC-EEEEEeCCc
Confidence            543332121234556655 33 466666554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.80  E-value=8.3e-05  Score=75.10  Aligned_cols=211  Identities=10%  Similarity=0.037  Sum_probs=145.9

Q ss_pred             CCCCceeCcCCCEEEEEe-CCcEEEEECCCCceE-EEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          420 DGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRR-QVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       420 ~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~-~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      .+..+.++.+|+.|++.+ .+.|-.+|..++... .+. ...+.++.|-.+.+++|++.          +-++|.++-.+
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ----------K~y~yvYD~~G  200 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQ----------KKYVYVYDNNG  200 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhh----------hceEEEecCCC
Confidence            345578899999999984 788999998887743 333 56678889988888888863          34555566655


Q ss_pred             CCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEE
Q 004971          497 VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS  576 (721)
Q Consensus       497 ~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~  576 (721)
                      .    ++..|.... .+..+.|-|--=.|+.++.   ...|.-.|+.+|+.  +..+..+.+....+.-.|-...|-.+.
T Consensus       201 t----ElHClk~~~-~v~rLeFLPyHfLL~~~~~---~G~L~Y~DVS~Gkl--Va~~~t~~G~~~vm~qNP~NaVih~Gh  270 (545)
T KOG1272|consen  201 T----ELHCLKRHI-RVARLEFLPYHFLLVAASE---AGFLKYQDVSTGKL--VASIRTGAGRTDVMKQNPYNAVIHLGH  270 (545)
T ss_pred             c----EEeehhhcC-chhhhcccchhheeeeccc---CCceEEEeechhhh--hHHHHccCCccchhhcCCccceEEEcC
Confidence            4    666666655 6677888887555554444   55688889999986  555655556556667777766555555


Q ss_pred             ccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971          577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       577 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~  656 (721)
                      ..+       .|-+|.....++..-..+ |.+.+.++++.++|+|++.+..+.                 .+-+||+.+-
T Consensus       271 snG-------tVSlWSP~skePLvKiLc-H~g~V~siAv~~~G~YMaTtG~Dr-----------------~~kIWDlR~~  325 (545)
T KOG1272|consen  271 SNG-------TVSLWSPNSKEPLVKILC-HRGPVSSIAVDRGGRYMATTGLDR-----------------KVKIWDLRNF  325 (545)
T ss_pred             CCc-------eEEecCCCCcchHHHHHh-cCCCcceEEECCCCcEEeeccccc-----------------ceeEeeeccc
Confidence            543       899999988764322222 788999999999999999887765                 3888898664


Q ss_pred             C-eEEeccCCCCCCCceecCC
Q 004971          657 D-LKRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       657 ~-~~~lt~~~~~~~~~~~sp~  676 (721)
                      . +..+.. .......++|-.
T Consensus       326 ~ql~t~~t-p~~a~~ls~Sqk  345 (545)
T KOG1272|consen  326 YQLHTYRT-PHPASNLSLSQK  345 (545)
T ss_pred             cccceeec-CCCccccccccc
Confidence            3 222222 233455666653

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=0.011  Score=57.17  Aligned_cols=239  Identities=14%  Similarity=0.103  Sum_probs=136.1

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCC--CceEEeecccCCCCcccCcEEcCC--CCEEEEEEeeCCCCCC
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVK--NKFIELTRFVSPKTHHLNPFISPD--SSRVGYHKCRGGSTRE  396 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~t--g~~~~l~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~~~~  396 (721)
                      -++.+.|.+ -|++++.-     +.+..+.+||...  ++...-.....+.+.+..+.|.+-  |+.|+.++.+..    
T Consensus        15 lihdVs~D~-~GRRmAtC-----SsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt----   84 (361)
T KOG2445|consen   15 LIHDVSFDF-YGRRMATC-----SSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT----   84 (361)
T ss_pred             eeeeeeecc-cCceeeec-----cCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc----
Confidence            456778888 99999883     3556699999643  344344445566777878888654  888888888877    


Q ss_pred             CCcceeEEEec---cCCCC------cceecccCCCCceeCcC--CCEEEEE-eCCcEEEEECCC-CceEE---------E
Q 004971          397 DGNNQLLLENI---KSPLP------DISLFRFDGSFPSFSPK--GDRIAFV-EFPGVYVVNSDG-SNRRQ---------V  454 (721)
Q Consensus       397 ~~~~~l~~~~~---~~~~~------~~~~~~~~~~~~~~SpD--G~~la~~-~~~~l~v~d~~~-g~~~~---------l  454 (721)
                         ..||--..   +.+..      .+...+.....+.|+|.  |-.||.+ .++.|.+|+.-. ....+         +
T Consensus        85 ---v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~  161 (361)
T KOG2445|consen   85 ---VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV  161 (361)
T ss_pred             ---eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence               34443321   11111      11111223334566664  4455555 467777777532 11111         1


Q ss_pred             e------ecCceeeEEcCC---CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC-CC-
Q 004971          455 Y------FKNAFSTVWDPV---REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD-GK-  523 (721)
Q Consensus       455 ~------~~~~~~~~~spd---g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD-g~-  523 (721)
                      .      ......+.|+|.   ...|++.++.  -...-+++.||..+.++. .......|..+...+..++|+|. |+ 
T Consensus       162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e--~a~~~~~~~Iye~~e~~r-Kw~kva~L~d~~dpI~di~wAPn~Gr~  238 (361)
T KOG2445|consen  162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDE--DAPHLNKVKIYEYNENGR-KWLKVAELPDHTDPIRDISWAPNIGRS  238 (361)
T ss_pred             cCCcccccCcceEEeeccccccCceEEEEccc--CCccccceEEEEecCCcc-eeeeehhcCCCCCcceeeeeccccCCc
Confidence            1      123456788763   4567777653  112346788998887663 11233345555567888999997 33 


Q ss_pred             --EEEEEEeeCCceeEEEEECCCCc------------------ccceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971          524 --WIVFRSTRTGYKNLYIMDAEGGE------------------GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD  579 (721)
Q Consensus       524 --~l~~~s~~~g~~~l~~~d~~~g~------------------~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~  579 (721)
                        .|++++.   ++ |++|.+....                  ...+..+..+...+..+.|.--|..|..++.++
T Consensus       239 y~~lAvA~k---Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG  310 (361)
T KOG2445|consen  239 YHLLAVATK---DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDG  310 (361)
T ss_pred             eeeEEEeec---Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCc
Confidence              3444443   32 6666665211                  011223344555667777777777666666653

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=97.67  E-value=0.0044  Score=67.42  Aligned_cols=264  Identities=14%  Similarity=0.072  Sum_probs=146.1

Q ss_pred             cEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeec----cc
Q 004971          291 WISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTR----FV  366 (721)
Q Consensus       291 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~----~~  366 (721)
                      ..-+|.+..+.         .+.........+..+.|+| ....++..    |..+++|.+||+..+.......    ..
T Consensus       223 ~~~vW~~~~p~---------~Pe~~~~~~s~v~~~~f~p-~~p~ll~g----G~y~GqV~lWD~~~~~~~~~s~ls~~~~  288 (555)
T KOG1587|consen  223 VLLVWSLKNPN---------TPELVLESPSEVTCLKFCP-FDPNLLAG----GCYNGQVVLWDLRKGSDTPPSGLSALEV  288 (555)
T ss_pred             eEEEEecCCCC---------CceEEEecCCceeEEEecc-CCcceEEe----eccCceEEEEEccCCCCCCCcccccccc
Confidence            34566555443         4555544445567788888 55445443    3455669999998776421111    12


Q ss_pred             CCCCcccCcEEcCCC--CEEEEEEeeCCCCCCCCcceeEEEec-cCCCCccee-----------cccCCCCceeCcCCCE
Q 004971          367 SPKTHHLNPFISPDS--SRVGYHKCRGGSTREDGNNQLLLENI-KSPLPDISL-----------FRFDGSFPSFSPKGDR  432 (721)
Q Consensus       367 ~~~~~~~~~~~Spdg--~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~-----------~~~~~~~~~~SpDG~~  432 (721)
                      .|...+..+.|-.+-  ..++..+.++..       ..|..+. ..+...+..           .......+.|.+..-.
T Consensus       289 sh~~~v~~vvW~~~~~~~~f~s~ssDG~i-------~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~  361 (555)
T KOG1587|consen  289 SHSEPVTAVVWLQNEHNTEFFSLSSDGSI-------CSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN  361 (555)
T ss_pred             cCCcCeEEEEEeccCCCCceEEEecCCcE-------eeeeccccccchhhcccccccccccccccccceeeEeeccCCCc
Confidence            233444455564433  336655555542       2221111 111000000           0011223445443322


Q ss_pred             -EEEE-eCCcEEEEECCCCceEE------Ee-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971          433 -IAFV-EFPGVYVVNSDGSNRRQ------VY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG  499 (721)
Q Consensus       433 -la~~-~~~~l~v~d~~~g~~~~------l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~  499 (721)
                       +++. ..+.|+...-.+.+...      +.     .+.+..+.++|=+..++.++       .+-.++||.-.....  
T Consensus       362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~-------gDW~vriWs~~~~~~--  432 (555)
T KOG1587|consen  362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV-------GDWTVRIWSEDVIAS--  432 (555)
T ss_pred             eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeee-------ccceeEeccccCCCC--
Confidence             2222 35666665544433222      11     56677888999888887775       467889998774332  


Q ss_pred             ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971          500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD  579 (721)
Q Consensus       500 ~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~  579 (721)
                        ....+......+...+|||---.+.+..+.  ++.|.+||+.......+..............|++.|+.|+++...+
T Consensus       433 --Pl~~~~~~~~~v~~vaWSptrpavF~~~d~--~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G  508 (555)
T KOG1587|consen  433 --PLLSLDSSPDYVTDVAWSPTRPAVFATVDG--DGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANG  508 (555)
T ss_pred             --cchhhhhccceeeeeEEcCcCceEEEEEcC--CCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCC
Confidence              333333333457789999986666655543  5679999987554322333322233446788999999999888875


Q ss_pred             CCCCCceeEEEEecCC
Q 004971          580 NPGSGSFEMYLIHPNG  595 (721)
Q Consensus       580 ~~~~~~~~i~~~d~~~  595 (721)
                             +++++++..
T Consensus       509 -------~~~~~~l~~  517 (555)
T KOG1587|consen  509 -------TTHILKLSE  517 (555)
T ss_pred             -------cEEEEEcCc
Confidence                   788888754

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=97.66  E-value=0.017  Score=53.92  Aligned_cols=145  Identities=14%  Similarity=0.193  Sum_probs=85.7

Q ss_pred             CCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe---ecCceeeEE-cCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          422 SFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFSTVW-DPVREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       422 ~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~~~-spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      ..+.+.|....|.++ +++.+|.||+++|+.++..   ...+..++- +..++ ++..       .+++.++||+.....
T Consensus       118 Nam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-ilsG-------~EDGtvRvWd~kt~k  189 (325)
T KOG0649|consen  118 NAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-ILSG-------AEDGTVRVWDTKTQK  189 (325)
T ss_pred             ceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc-eeec-------CCCccEEEEeccccc
Confidence            345667777777777 6889999999999987766   334444444 33333 3333       268999999998765


Q ss_pred             CCCccceEEcccCC-CCCcce-------EEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccC
Q 004971          497 VDGVSAVRRLTTNG-KNNAFP-------SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD  568 (721)
Q Consensus       497 ~~~~~~~~~l~~~~-~~~~~~-------~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD  568 (721)
                           .+..+.... .....|       +..-+..||++..    ...+-+|++...+.   ..+..-+..+..+.|-.|
T Consensus       190 -----~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg----Gp~lslwhLrsse~---t~vfpipa~v~~v~F~~d  257 (325)
T KOG0649|consen  190 -----HVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG----GPKLSLWHLRSSES---TCVFPIPARVHLVDFVDD  257 (325)
T ss_pred             -----eeEEeccccChhhcCcccCceeEEEeccCceEEecC----CCceeEEeccCCCc---eEEEecccceeEeeeecc
Confidence                 444444322 122222       2333455555544    57899999998885   333333344466777644


Q ss_pred             CCEEEEEEccCCCCCCceeEEEEecCC
Q 004971          569 GEWIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       569 G~~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                        .++.....       +.+-.|.+.+
T Consensus       258 --~vl~~G~g-------~~v~~~~l~G  275 (325)
T KOG0649|consen  258 --CVLIGGEG-------NHVQSYTLNG  275 (325)
T ss_pred             --eEEEeccc-------cceeeeeecc
Confidence              44444422       2566666644

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.66  E-value=0.13  Score=55.15  Aligned_cols=94  Identities=16%  Similarity=0.213  Sum_probs=54.1

Q ss_pred             cCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971          520 PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL  598 (721)
Q Consensus       520 pDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~  598 (721)
                      .++.+|++.+.   +..|+.+|..+|+.  +-.... .......|...  +..|++...++       .|+.+|.++|+.
T Consensus       292 ~~~~~vy~~~~---~g~l~ald~~tG~~--~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G-------~l~~ld~~tG~~  357 (394)
T PRK11138        292 VDGGRIYLVDQ---NDRVYALDTRGGVE--LWSQSDLLHRLLTAPVLY--NGYLVVGDSEG-------YLHWINREDGRF  357 (394)
T ss_pred             EECCEEEEEcC---CCeEEEEECCCCcE--EEcccccCCCcccCCEEE--CCEEEEEeCCC-------EEEEEECCCCCE
Confidence            35677887775   67899999999873  211111 11122344443  45677777664       799999999876


Q ss_pred             EEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       599 ~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      .--...........|.+. + ..|++.+.++
T Consensus       358 ~~~~~~~~~~~~s~P~~~-~-~~l~v~t~~G  386 (394)
T PRK11138        358 VAQQKVDSSGFLSEPVVA-D-DKLLIQARDG  386 (394)
T ss_pred             EEEEEcCCCcceeCCEEE-C-CEEEEEeCCc
Confidence            533322112233445553 3 3666665544

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=97.64  E-value=0.017  Score=65.43  Aligned_cols=215  Identities=18%  Similarity=0.222  Sum_probs=123.2

Q ss_pred             ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-----CCcEEEEEC
Q 004971          372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-----FPGVYVVNS  446 (721)
Q Consensus       372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-----~~~l~v~d~  446 (721)
                      +..+.++|+++.+++...............+|+.+...  ............+.|||||+.+++..     ...+++++.
T Consensus        15 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~   92 (620)
T COG1506          15 VSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT--VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDV   92 (620)
T ss_pred             ccCcccCCCCceeEEeeccccccccccccceEEEeccc--ccccccCCcccccccCCCCCEEEEEeccCCCcceEEEEec
Confidence            34567788888888876542222122224466654332  11222233455689999999999985     456888887


Q ss_pred             CCCceEEEeecCceeeEEcCCCCeEEEEecCCCC-----------------CCCC-CcEEEEEEEccCCCCccceEEccc
Q 004971          447 DGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEF-----------------ASES-SEVDIISINVDDVDGVSAVRRLTT  508 (721)
Q Consensus       447 ~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~-----------------~~~~-~~~~i~~~~~~~~~~~~~~~~l~~  508 (721)
                      . + ........+....|+|+|+.+++.......                 .... ....+|.++..+     ....+..
T Consensus        93 ~-g-~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~-----~~~~~~~  165 (620)
T COG1506          93 G-G-LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES-----KLIKLGL  165 (620)
T ss_pred             C-C-ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCc-----ccccccC
Confidence            7 4 223335677889999999999994311100                 0111 234444444321     2222333


Q ss_pred             CCCCCcceEEccCCCEEEEEEeeCC----ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCC-CCC
Q 004971          509 NGKNNAFPSVSPDGKWIVFRSTRTG----YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN-PGS  583 (721)
Q Consensus       509 ~~~~~~~~~~SpDg~~l~~~s~~~g----~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~-~~~  583 (721)
                      .......+.+.++++.++.......    ....+++...++.   +..++.....+..+.|.+||+.+++...... ...
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~  242 (620)
T COG1506         166 GNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGE---LESLTPGEGSISKLAFDADGKSIALLGTESDRGLA  242 (620)
T ss_pred             CCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCc---eEEEcCCCceeeeeeeCCCCCeeEEeccCCccCcc
Confidence            3344455666666777766654332    1233344334555   6777777666788999999998888776543 222


Q ss_pred             CceeEEEEecCCCce
Q 004971          584 GSFEMYLIHPNGTGL  598 (721)
Q Consensus       584 ~~~~i~~~d~~~~~~  598 (721)
                      ....+++++...++.
T Consensus       243 ~~~~~~~~~~~~~~~  257 (620)
T COG1506         243 EGDFILLLDGELGEV  257 (620)
T ss_pred             ccceEEEEecccccc
Confidence            344566766334433

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=97.60  E-value=0.0063  Score=68.36  Aligned_cols=142  Identities=10%  Similarity=0.156  Sum_probs=85.8

Q ss_pred             CceEEEEeecCCCcceeEEeccCCCCCCCCceeee-ccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCc
Q 004971           29 RSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKI-TDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPL  107 (721)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (721)
                      ...|+|+..-+    +.|.+.+.++    .+++.+ +.+...+..|+|||||+                           
T Consensus       318 ~tkiAfv~~~~----~~L~~~D~dG----~n~~~ve~~~~~~i~sP~~SPDG~---------------------------  362 (912)
T TIGR02171       318 KAKLAFRNDVT----GNLAYIDYTK----GASRAVEIEDTISVYHPDISPDGK---------------------------  362 (912)
T ss_pred             eeeEEEEEcCC----CeEEEEecCC----CCceEEEecCCCceecCcCCCCCC---------------------------
Confidence            35788886522    2789998888    889989 88889999999999999                           


Q ss_pred             eEEE-Eeeec--CCceeEEeeeecCcccccccchhhhccccccccceeeccccccccCCceeeeeecccccCCEEEEEec
Q 004971          108 QLIY-VTERN--GTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVST  184 (721)
Q Consensus       108 ~~~~-~~~~~--g~~~v~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~  184 (721)
                      +|+| ++-..  |.+.||+.++.....  ..-+  |.-..    .-++           .| .+++.-   .-.|+|+++
T Consensus       363 ~vAY~ts~e~~~g~s~vYv~~L~t~~~--~~vk--l~ve~----aaip-----------rw-rv~e~g---dt~ivyv~~  419 (912)
T TIGR02171       363 KVAFCTGIEGLPGKSSVYVRNLNASGS--GLVK--LPVEN----AAIP-----------RW-RVLENG---DTVIVYVSD  419 (912)
T ss_pred             EEEEEEeecCCCCCceEEEEehhccCC--CceE--eeccc----cccc-----------ce-EecCCC---CeEEEEEcC
Confidence            9999 65554  688899988764330  0222  33111    1111           57 444333   234788887


Q ss_pred             CCCCCCC-CCccceEEEEeCCC---cceEeecCCCCCccccccCCCCCEEE
Q 004971          185 HENPGTP-RTSWAAVYSTELKT---GLTRRLTPYGVADFSPAVSPSGKYTA  231 (721)
Q Consensus       185 ~~~~~~~-~~~~~~l~~v~~~~---g~~~~lt~~~~~~~~p~~SPDG~~la  231 (721)
                      .+.+... .......|.|.-..   |+++.|-. +..+.  -+|.|.+..+
T Consensus       420 a~nn~d~~~~~~~stw~v~f~~gkfg~p~kl~d-ga~hg--gvs~~~~lav  467 (912)
T TIGR02171       420 ASNNKDDATFAAYSTWQVPFANGKFGTPKKLFD-GAYHG--GVSEDLNLAV  467 (912)
T ss_pred             CCCCcchhhhhhcceEEEEecCCCCCCchhhhc-ccccc--ccccCCceee
Confidence            7664421 00123567777554   45666632 22222  3565554433

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.59  E-value=0.016  Score=58.77  Aligned_cols=235  Identities=12%  Similarity=0.088  Sum_probs=138.4

Q ss_pred             CCCEEEEEEecCCCCeeeEEEEECCCCce----EEeec---------------ccCCCCcccCcEEcCCCCEEEEEEeeC
Q 004971          331 NNKFIAVATRRPTSSYRHIELFDLVKNKF----IELTR---------------FVSPKTHHLNPFISPDSSRVGYHKCRG  391 (721)
Q Consensus       331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~----~~l~~---------------~~~~~~~~~~~~~Spdg~~l~~~~~~~  391 (721)
                      .|+++|..+.     +..|.+||+.--..    ..|..               ..+|...+..++|...-+.|++.....
T Consensus       191 ~gNyvAiGtm-----dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD  265 (463)
T KOG0270|consen  191 AGNYVAIGTM-----DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD  265 (463)
T ss_pred             CcceEEEecc-----CceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC
Confidence            4678888543     34699999863211    11110               011222234566766666665533322


Q ss_pred             CCCCCCCcceeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEE-e-CCcEEEEECCCCc--eEEE-eecCceeeEE
Q 004971          392 GSTREDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFV-E-FPGVYVVNSDGSN--RRQV-YFKNAFSTVW  464 (721)
Q Consensus       392 ~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~-~-~~~l~v~d~~~g~--~~~l-~~~~~~~~~~  464 (721)
                              ..+.++++..+  ...+......+..+.|+|..-.+... + ++.+.+.|.....  .... +.+.+..+.|
T Consensus       266 --------~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w  337 (463)
T KOG0270|consen  266 --------KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAW  337 (463)
T ss_pred             --------ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEe
Confidence                    24666676655  33344445556778998876555444 3 7888888886311  1222 2678889999


Q ss_pred             cCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCC
Q 004971          465 DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG  544 (721)
Q Consensus       465 spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~  544 (721)
                      .|.....++++      .+++.++-+++...+.    .+..+..|...+..+.+++.-..++.....  +..+.+|++..
T Consensus       338 ~~~se~~f~~~------tddG~v~~~D~R~~~~----~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~--d~~Vklw~~~~  405 (463)
T KOG0270|consen  338 DPHSENSFFVS------TDDGTVYYFDIRNPGK----PVWTLKAHDDEISGLSVNIQTPGLLSTAST--DKVVKLWKFDV  405 (463)
T ss_pred             cCCCceeEEEe------cCCceEEeeecCCCCC----ceeEEEeccCCcceEEecCCCCcceeeccc--cceEEEEeecC
Confidence            99999888887      4677777777766554    677788888888999998887776665433  55666666654


Q ss_pred             CcccceEECcCCCcCceeeEEccCCCEE-EEEEccCCCCCCceeEEEEecCCCc
Q 004971          545 GEGYGLHRLTEGPWSDTMCNWSPDGEWI-AFASDRDNPGSGSFEMYLIHPNGTG  597 (721)
Q Consensus       545 g~~~~~~~l~~~~~~~~~~~~SpDG~~l-~~~~~~~~~~~~~~~i~~~d~~~~~  597 (721)
                      ..++.+..-...-+.....++.|+--.+ +++...       ..+.+||+.+..
T Consensus       406 ~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k-------~~~~vwd~~~~~  452 (463)
T KOG0270|consen  406 DSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEK-------AVLRVWDIFTNS  452 (463)
T ss_pred             CCCcccccccccccceeecccCCCcceEEEecCcc-------ceEEEeecccCh
Confidence            4421111111111223445666765433 333333       268899987654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.59  E-value=0.042  Score=53.05  Aligned_cols=164  Identities=13%  Similarity=0.093  Sum_probs=89.5

Q ss_pred             CCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEeec---------CceeeEEcC-----C-CCeEEEEecCCCCCCCCC
Q 004971          422 SFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVYFK---------NAFSTVWDP-----V-REAVVYTSGGPEFASESS  485 (721)
Q Consensus       422 ~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~~~---------~~~~~~~sp-----d-g~~la~~~~~~~~~~~~~  485 (721)
                      +.++||||+..||++ +.+.|.++|+.+.+...|...         .+..+.|-+     + ...|++..       -.+
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~-------Y~G  119 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN-------YRG  119 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEe-------ccc
Confidence            347999999999999 688999999998776555411         111222211     1 11222221       234


Q ss_pred             cEEEEEEEccCCCCccceEEccc---CCCCCcceEEccCCCEEEEEEeeCCc--------eeEEEEECCCCccc------
Q 004971          486 EVDIISINVDDVDGVSAVRRLTT---NGKNNAFPSVSPDGKWIVFRSTRTGY--------KNLYIMDAEGGEGY------  548 (721)
Q Consensus       486 ~~~i~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~SpDg~~l~~~s~~~g~--------~~l~~~d~~~g~~~------  548 (721)
                      .++-|.+.........+...+.-   ....+....|+|.-+.|++++.....        ..|..|.+-++.+.      
T Consensus       120 ~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~  199 (282)
T PF15492_consen  120 QLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTS  199 (282)
T ss_pred             eeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccc
Confidence            44444443321111112222222   23456678899988877776543211        13444433222210      


Q ss_pred             ------------ceEECc---------CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971          549 ------------GLHRLT---------EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR  599 (721)
Q Consensus       549 ------------~~~~l~---------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~  599 (721)
                                  ...++.         .....+..+..||||+.|+.....+       .|.+|++-+-..+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG-------~lsLW~iPsL~~~  264 (282)
T PF15492_consen  200 SEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSG-------SLSLWEIPSLRLQ  264 (282)
T ss_pred             cCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCC-------eEEEEecCcchhh
Confidence                        001111         1122356789999999999999886       8999998765433

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.53  E-value=0.013  Score=62.15  Aligned_cols=140  Identities=12%  Similarity=0.165  Sum_probs=93.1

Q ss_pred             CCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCc--EEEEEEEccCCCCccceEEcc--c-
Q 004971          438 FPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSE--VDIISINVDDVDGVSAVRRLT--T-  508 (721)
Q Consensus       438 ~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~l~--~-  508 (721)
                      ...+.++.+.+++...+.    ........||-...+.+++.....-..+...  ..+|.+..+      +++++.  . 
T Consensus       183 raNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~------klqrvsvtsi  256 (545)
T PF11768_consen  183 RANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRN------KLQRVSVTSI  256 (545)
T ss_pred             hccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecC------ceeEEEEEEE
Confidence            456888888887766554    5667788888744444444321111112223  344544432      233222  1 


Q ss_pred             -CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCcee
Q 004971          509 -NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFE  587 (721)
Q Consensus       509 -~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~  587 (721)
                       ....+...+++|+.++|+....   ++.|.+||...+.    ............++|.|||..+++++.++       .
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~---DgSiiLyD~~~~~----t~~~ka~~~P~~iaWHp~gai~~V~s~qG-------e  322 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCE---DGSIILYDTTRGV----TLLAKAEFIPTLIAWHPDGAIFVVGSEQG-------E  322 (545)
T ss_pred             ecCCcceEEecCcccceEEEEec---CCeEEEEEcCCCe----eeeeeecccceEEEEcCCCcEEEEEcCCc-------e
Confidence             2246777899999999999998   8899999997653    44445555668899999999999998876       8


Q ss_pred             EEEEecCCCc
Q 004971          588 MYLIHPNGTG  597 (721)
Q Consensus       588 i~~~d~~~~~  597 (721)
                      |.+||++-+.
T Consensus       323 lQ~FD~ALsp  332 (545)
T PF11768_consen  323 LQCFDMALSP  332 (545)
T ss_pred             EEEEEeecCc
Confidence            9999987654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=0.033  Score=54.00  Aligned_cols=239  Identities=12%  Similarity=0.059  Sum_probs=132.9

Q ss_pred             CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcc------eecccCCCCceeC-c-CCCEEEEEe-CC
Q 004971          369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI------SLFRFDGSFPSFS-P-KGDRIAFVE-FP  439 (721)
Q Consensus       369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~S-p-DG~~la~~~-~~  439 (721)
                      ..-+.++.|.+-|++++..+.+..       ..+|  ++..+....      .......-.+.|. | =|+.+|.++ +.
T Consensus        13 ~DlihdVs~D~~GRRmAtCSsDq~-------vkI~--d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr   83 (361)
T KOG2445|consen   13 KDLIHDVSFDFYGRRMATCSSDQT-------VKIW--DSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR   83 (361)
T ss_pred             cceeeeeeecccCceeeeccCCCc-------EEEE--eccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence            334556788888999998877766       3333  432221111      1111222224453 2 277788875 77


Q ss_pred             cEEEEECC-----C--CceEEEe-----ecCceeeEEcCC--CCeEEEEecCCCCCCCCCcEEEEEEEccCCC----Ccc
Q 004971          440 GVYVVNSD-----G--SNRRQVY-----FKNAFSTVWDPV--REAVVYTSGGPEFASESSEVDIISINVDDVD----GVS  501 (721)
Q Consensus       440 ~l~v~d~~-----~--g~~~~l~-----~~~~~~~~~spd--g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~  501 (721)
                      .+.+|.-.     .  .+-...+     ...+.++.|.|-  |-.|+.++       .++.++||....-...    -..
T Consensus        84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~-------aDG~lRIYEA~dp~nLs~W~Lq~  156 (361)
T KOG2445|consen   84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS-------ADGILRIYEAPDPMNLSQWTLQH  156 (361)
T ss_pred             ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEec-------cCcEEEEEecCCccccccchhhh
Confidence            88888652     1  1111121     356778888885  55566554       5788999876432210    000


Q ss_pred             ceEEcccC----CCCCcceEEccC---CCEEEEEEeeC----CceeEEEEECCCCcccceEECcCCCcCceeeEEccC-C
Q 004971          502 AVRRLTTN----GKNNAFPSVSPD---GKWIVFRSTRT----GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD-G  569 (721)
Q Consensus       502 ~~~~l~~~----~~~~~~~~~SpD---g~~l~~~s~~~----g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD-G  569 (721)
                      +...+...    ......+.|.|.   ...|++.++.+    +...||-++-.+.+...+..|......+..++|+|. |
T Consensus       157 Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~G  236 (361)
T KOG2445|consen  157 EIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIG  236 (361)
T ss_pred             hhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccC
Confidence            11111111    123344577753   34677777642    234566666555454446667777777899999997 4


Q ss_pred             C---EEEEEEccCCCCCCceeEEEEecCCC------------------ceEEee-ecCCCCCcCCeEECCCCCEEEEEEe
Q 004971          570 E---WIAFASDRDNPGSGSFEMYLIHPNGT------------------GLRKLI-QSGSAGRANHPYFSPDGKSIVFTSD  627 (721)
Q Consensus       570 ~---~l~~~~~~~~~~~~~~~i~~~d~~~~------------------~~~~l~-~~~~~~~~~~~~~SpDG~~l~~~~~  627 (721)
                      +   .||++..+        .|++|.+...                  ...++. ...|.+.+..+.|.--|..|..++.
T Consensus       237 r~y~~lAvA~kD--------gv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd  308 (361)
T KOG2445|consen  237 RSYHLLAVATKD--------GVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD  308 (361)
T ss_pred             CceeeEEEeecC--------cEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence            4   45555544        2666665421                  011111 1136677888899888998887777


Q ss_pred             cCCC
Q 004971          628 YGGI  631 (721)
Q Consensus       628 ~~~~  631 (721)
                      ++..
T Consensus       309 DG~V  312 (361)
T KOG2445|consen  309 DGCV  312 (361)
T ss_pred             Ccee
Confidence            7653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.48  E-value=0.034  Score=54.70  Aligned_cols=110  Identities=17%  Similarity=0.142  Sum_probs=64.7

Q ss_pred             EEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcC---------ceeeEEccCCCEEEEEEccCCCCCCcee
Q 004971          517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS---------DTMCNWSPDGEWIAFASDRDNPGSGSFE  587 (721)
Q Consensus       517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~---------~~~~~~SpDG~~l~~~~~~~~~~~~~~~  587 (721)
                      ....+++.+++...   ...|+.+|+.+|+..-...+......         ...+.++ ++ .+++...+.       .
T Consensus       117 ~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g-------~  184 (238)
T PF13360_consen  117 SPAVDGDRLYVGTS---SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDG-------R  184 (238)
T ss_dssp             EEEEETTEEEEEET---CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTS-------S
T ss_pred             CceEecCEEEEEec---cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCC-------e
Confidence            44445788887775   67899999999985111223221110         1223333 44 666666553       3


Q ss_pred             EEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971          588 MYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK  659 (721)
Q Consensus       588 i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  659 (721)
                      ++.+|+.+++.. ...  .... .......++..|++.+ ..+                .|+++|+.+|+..
T Consensus       185 ~~~~d~~tg~~~-w~~--~~~~-~~~~~~~~~~~l~~~~-~~~----------------~l~~~d~~tG~~~  235 (238)
T PF13360_consen  185 VVAVDLATGEKL-WSK--PISG-IYSLPSVDGGTLYVTS-SDG----------------RLYALDLKTGKVV  235 (238)
T ss_dssp             EEEEETTTTEEE-EEE--CSS--ECECEECCCTEEEEEE-TTT----------------EEEEEETTTTEEE
T ss_pred             EEEEECCCCCEE-EEe--cCCC-ccCCceeeCCEEEEEe-CCC----------------EEEEEECCCCCEE
Confidence            666799998744 222  1111 1222567888888877 332                5999999999764

...

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.46  E-value=0.00012  Score=48.80  Aligned_cols=36  Identities=17%  Similarity=0.359  Sum_probs=30.4

Q ss_pred             eeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeec--CCceeEE
Q 004971           61 IKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERN--GTSNIYY  123 (721)
Q Consensus        61 ~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~v~~  123 (721)
                      +|++.....+..|.|||||+                           +|+|++.+.  |..+||.
T Consensus         2 ~~~t~~~~~~~~p~~SpDGk---------------------------~i~f~s~~~~~g~~diy~   39 (39)
T PF07676_consen    2 KQLTNSPGDDGSPAWSPDGK---------------------------YIYFTSNRNDRGSFDIYV   39 (39)
T ss_dssp             EEES-SSSSEEEEEE-TTSS---------------------------EEEEEEECT--SSEEEEE
T ss_pred             cCcccCCccccCEEEecCCC---------------------------EEEEEecCCCCCCcCEEC
Confidence            57888888889999999999                           999999998  8888885

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.45  E-value=0.00026  Score=47.19  Aligned_cols=36  Identities=39%  Similarity=0.749  Sum_probs=28.6

Q ss_pred             EEcccCCCCCcceEEccCCCEEEEEEeeC--CceeEEE
Q 004971          504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRT--GYKNLYI  539 (721)
Q Consensus       504 ~~l~~~~~~~~~~~~SpDg~~l~~~s~~~--g~~~l~~  539 (721)
                      ++++........++|||||++|+|.+.+.  +..+||+
T Consensus         2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~   39 (39)
T PF07676_consen    2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV   39 (39)
T ss_dssp             EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred             cCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence            45666666788899999999999999988  7778875

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.41  E-value=0.00094  Score=67.74  Aligned_cols=214  Identities=11%  Similarity=0.017  Sum_probs=133.7

Q ss_pred             ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCc
Q 004971          372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSN  450 (721)
Q Consensus       372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~  450 (721)
                      ...+.++.+|++|++....+-         +-..|..+... .-......+..+.|-.+.+++|++...-+|+||-.|-+
T Consensus       132 PY~~~ytrnGrhlllgGrKGH---------lAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE  202 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGH---------LAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE  202 (545)
T ss_pred             CeeeeecCCccEEEecCCccc---------eeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcE
Confidence            345778899999988654443         22222222210 00111223455677777888888888899999988876


Q ss_pred             eEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEE
Q 004971          451 RRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS  529 (721)
Q Consensus       451 ~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s  529 (721)
                      ..-|. ...+..+.|-|--=.|+.++       ..+...-.++....     .+..+....+....+.-.|-+.-+-...
T Consensus       203 lHClk~~~~v~rLeFLPyHfLL~~~~-------~~G~L~Y~DVS~Gk-----lVa~~~t~~G~~~vm~qNP~NaVih~Gh  270 (545)
T KOG1272|consen  203 LHCLKRHIRVARLEFLPYHFLLVAAS-------EAGFLKYQDVSTGK-----LVASIRTGAGRTDVMKQNPYNAVIHLGH  270 (545)
T ss_pred             EeehhhcCchhhhcccchhheeeecc-------cCCceEEEeechhh-----hhHHHHccCCccchhhcCCccceEEEcC
Confidence            65554 45666777777654444443       33444444444432     3333444444444555566555444333


Q ss_pred             eeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCC
Q 004971          530 TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGR  609 (721)
Q Consensus       530 ~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~  609 (721)
                      .   +..+-+|.+...++  +..+..+.+.+.++++.++|++++.+..+.       .+.+||+..-.  ++........
T Consensus       271 s---nGtVSlWSP~skeP--LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr-------~~kIWDlR~~~--ql~t~~tp~~  336 (545)
T KOG1272|consen  271 S---NGTVSLWSPNSKEP--LVKILCHRGPVSSIAVDRGGRYMATTGLDR-------KVKIWDLRNFY--QLHTYRTPHP  336 (545)
T ss_pred             C---CceEEecCCCCcch--HHHHHhcCCCcceEEECCCCcEEeeccccc-------ceeEeeecccc--ccceeecCCC
Confidence            3   67899999998876  777778888899999999999999999885       89999997643  2221112234


Q ss_pred             cCCeEECCCCC
Q 004971          610 ANHPYFSPDGK  620 (721)
Q Consensus       610 ~~~~~~SpDG~  620 (721)
                      ...+++|.-|-
T Consensus       337 a~~ls~Sqkgl  347 (545)
T KOG1272|consen  337 ASNLSLSQKGL  347 (545)
T ss_pred             ccccccccccc
Confidence            56678886543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.40  E-value=0.059  Score=51.30  Aligned_cols=156  Identities=9%  Similarity=0.029  Sum_probs=104.4

Q ss_pred             CCCceeCcCCCEEEEEe-CCcEEEEECCCCc--eEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEE
Q 004971          421 GSFPSFSPKGDRIAFVE-FPGVYVVNSDGSN--RRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN  493 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~--~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~  493 (721)
                      ...+++|+|+++++.++ ..+++.|.++...  ...+.    ....+...||.....+|++.       .++...||++.
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~-------Qdg~~~I~DVR  233 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF-------QDGTCAIYDVR  233 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe-------cCCcEEEEEec
Confidence            44579999999999985 5678888886443  22233    34566788999998888886       57999999997


Q ss_pred             ccCCCCccceEEcc----cCCCCCcceEEccCCC-EEEEEEeeCCceeEEEEECCCCcccceEECcCCC------cCcee
Q 004971          494 VDDVDGVSAVRRLT----TNGKNNAFPSVSPDGK-WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP------WSDTM  562 (721)
Q Consensus       494 ~~~~~~~~~~~~l~----~~~~~~~~~~~SpDg~-~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~------~~~~~  562 (721)
                      -.+.    .....+    .+.+......|||-|- -|+|.++.  ...+.+.|..++...++..+....      ..+..
T Consensus       234 ~~~t----pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh--fs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifg  307 (344)
T KOG4532|consen  234 NMAT----PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH--FSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFG  307 (344)
T ss_pred             cccc----chhhhcccCCCCCCceEEEEecCCCcceEEEEecC--cceEEEEEcccCceeeEEecCcccccccccccccc
Confidence            6553    222222    2336677789998654 24455442  567888999888754444444332      22455


Q ss_pred             eEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971          563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG  597 (721)
Q Consensus       563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~  597 (721)
                      -.|+.++..+.+....        +++-|++.+..
T Consensus       308 t~f~~~n~s~~v~~e~--------~~ae~ni~srs  334 (344)
T KOG4532|consen  308 TNFNNENESNDVKNEL--------QGAEYNILSRS  334 (344)
T ss_pred             ccccCCCcccccccch--------hhheeeccccc
Confidence            6778788777766655        67778776643

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=97.39  E-value=0.0046  Score=61.95  Aligned_cols=161  Identities=10%  Similarity=0.032  Sum_probs=93.2

Q ss_pred             eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEE
Q 004971          461 STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM  540 (721)
Q Consensus       461 ~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~  540 (721)
                      ....+|.++.||.+.       ......++.+.....  ..+...............+-.+...+.+....+....+.++
T Consensus        67 ~~~~s~~~~llAv~~-------~~K~~~~f~~~~~~~--~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~  137 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVAT-------SSKQRAVFDYRENPK--GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDIL  137 (390)
T ss_pred             ccccCCCceEEEEEe-------CCCceEEEEEecCCC--cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeee
Confidence            445566777777664       234444555444321  00111111222344556666666777666553333455555


Q ss_pred             ECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCC
Q 004971          541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK  620 (721)
Q Consensus       541 d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~  620 (721)
                      ....+.   ...+..+...+..++||||+++|+++..++       .|++-....--...-...+|...+..++.-++ .
T Consensus       138 s~~~~~---~~~~lGhvSml~dVavS~D~~~IitaDRDE-------kIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~  206 (390)
T KOG3914|consen  138 SADSGR---CEPILGHVSMLLDVAVSPDDQFIITADRDE-------KIRVSRYPATFVIESFCLGHKEFVSTISLTDN-Y  206 (390)
T ss_pred             cccccC---cchhhhhhhhhheeeecCCCCEEEEecCCc-------eEEEEecCcccchhhhccccHhheeeeeeccC-c
Confidence            555454   556666767788999999999998888775       66665543322222222246677888888755 4


Q ss_pred             EEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe
Q 004971          621 SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL  658 (721)
Q Consensus       621 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  658 (721)
                      .|+..+.++                 .|++||..+|+.
T Consensus       207 ~LlS~sGD~-----------------tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  207 LLLSGSGDK-----------------TLRLWDITSGKL  227 (390)
T ss_pred             eeeecCCCC-----------------cEEEEecccCCc
Confidence            455555554                 499999887754

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.34  E-value=0.024  Score=59.73  Aligned_cols=106  Identities=15%  Similarity=0.061  Sum_probs=73.8

Q ss_pred             eEEcccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccC
Q 004971          503 VRRLTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRD  579 (721)
Q Consensus       503 ~~~l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~  579 (721)
                      ...++.+.  +.+....++.+-..|+..+.   +.++..|+...+.   +..+- .....+..+..+|||+.|+.++.  
T Consensus        93 t~~~st~~h~~~v~~~~~~~~~~ciyS~~a---d~~v~~~~~~~~~---~~~~~~~~~~~~~sl~is~D~~~l~~as~--  164 (541)
T KOG4547|consen   93 TAKLSTDKHYGNVNEILDAQRLGCIYSVGA---DLKVVYILEKEKV---IIRIWKEQKPLVSSLCISPDGKILLTASR--  164 (541)
T ss_pred             EEEEecCCCCCcceeeecccccCceEecCC---ceeEEEEecccce---eeeeeccCCCccceEEEcCCCCEEEeccc--
Confidence            34454332  45555566666555655554   7788899988776   33333 33445678999999998887774  


Q ss_pred             CCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCC-----CCEEEE
Q 004971          580 NPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD-----GKSIVF  624 (721)
Q Consensus       580 ~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpD-----G~~l~~  624 (721)
                             +|.+||+.+++...-+. +|.+.+..++|.-+     |+++..
T Consensus       165 -------~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLs  206 (541)
T KOG4547|consen  165 -------QIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLS  206 (541)
T ss_pred             -------eEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeee
Confidence                   69999999988776654 48888899988777     666544

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.28  E-value=0.017  Score=57.67  Aligned_cols=133  Identities=13%  Similarity=0.042  Sum_probs=98.0

Q ss_pred             CcEEEEECCCCceEEEe--------------ecCceeeEEcCC--CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccc
Q 004971          439 PGVYVVNSDGSNRRQVY--------------FKNAFSTVWDPV--REAVVYTSGGPEFASESSEVDIISINVDDVDGVSA  502 (721)
Q Consensus       439 ~~l~v~d~~~g~~~~l~--------------~~~~~~~~~spd--g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  502 (721)
                      ..+.+||+.+.+  ++.              +-.+.++.|-+.  ...++.++       ..+.+++|+...+..    .
T Consensus       173 n~lkiwdle~~~--qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T-------~~hqvR~YDt~~qRR----P  239 (412)
T KOG3881|consen  173 NELKIWDLEQSK--QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT-------RYHQVRLYDTRHQRR----P  239 (412)
T ss_pred             cceeeeecccce--eeeeccCCCCccccceeeeeeccceecCCCCCceEEEEe-------cceeEEEecCcccCc----c
Confidence            578999998773  333              123456677766  66666665       568889998876543    4


Q ss_pred             eEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE-CcCCCcCceeeEEccCCCEEEEEEccCCC
Q 004971          503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR-LTEGPWSDTMCNWSPDGEWIAFASDRDNP  581 (721)
Q Consensus       503 ~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~-l~~~~~~~~~~~~SpDG~~l~~~~~~~~~  581 (721)
                      +..+........+....|+|++|+++..   ..+|..+|+.++..  +.. +..-.+.+..+...|.++.|+.++-+.  
T Consensus       240 V~~fd~~E~~is~~~l~p~gn~Iy~gn~---~g~l~~FD~r~~kl--~g~~~kg~tGsirsih~hp~~~~las~GLDR--  312 (412)
T KOG3881|consen  240 VAQFDFLENPISSTGLTPSGNFIYTGNT---KGQLAKFDLRGGKL--LGCGLKGITGSIRSIHCHPTHPVLASCGLDR--  312 (412)
T ss_pred             eeEeccccCcceeeeecCCCcEEEEecc---cchhheecccCcee--eccccCCccCCcceEEEcCCCceEEeeccce--
Confidence            5555555567788899999999998877   67899999998873  333 233356678899999999999998874  


Q ss_pred             CCCceeEEEEecCCC
Q 004971          582 GSGSFEMYLIHPNGT  596 (721)
Q Consensus       582 ~~~~~~i~~~d~~~~  596 (721)
                           .|.++|+.+.
T Consensus       313 -----yvRIhD~ktr  322 (412)
T KOG3881|consen  313 -----YVRIHDIKTR  322 (412)
T ss_pred             -----eEEEeecccc
Confidence                 8999999883

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.26  E-value=0.057  Score=57.03  Aligned_cols=134  Identities=13%  Similarity=0.138  Sum_probs=89.3

Q ss_pred             eCCcEEEEECCCCceEE-Ee----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCC
Q 004971          437 EFPGVYVVNSDGSNRRQ-VY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK  511 (721)
Q Consensus       437 ~~~~l~v~d~~~g~~~~-l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~  511 (721)
                      ..+.++++++.+|+... +.    .+.+..+.|+.+-..|+.+.       .+..+..|......     ..+.......
T Consensus        78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~-------ad~~v~~~~~~~~~-----~~~~~~~~~~  145 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVG-------ADLKVVYILEKEKV-----IIRIWKEQKP  145 (541)
T ss_pred             CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecC-------CceeEEEEecccce-----eeeeeccCCC
Confidence            47789999998888543 33    34556666666665565543       34555555544321     2233333445


Q ss_pred             CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccC-----CCEEEEEEccCCCCCCce
Q 004971          512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD-----GEWIAFASDRDNPGSGSF  586 (721)
Q Consensus       512 ~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD-----G~~l~~~~~~~~~~~~~~  586 (721)
                      .+....++|||+.|+.++     .+|-+||.++++.  +...+.+...+..++|--+     |++++....-.    ...
T Consensus       146 ~~~sl~is~D~~~l~~as-----~~ik~~~~~~kev--v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~----r~i  214 (541)
T KOG4547|consen  146 LVSSLCISPDGKILLTAS-----RQIKVLDIETKEV--VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAE----RGI  214 (541)
T ss_pred             ccceEEEcCCCCEEEecc-----ceEEEEEccCceE--EEEecCCCcceEEEEEEEeccccccceeeeccccc----cce
Confidence            678899999999998876     4799999999986  7778888888888888776     77776655432    334


Q ss_pred             eEEEEec
Q 004971          587 EMYLIHP  593 (721)
Q Consensus       587 ~i~~~d~  593 (721)
                      .++..+-
T Consensus       215 ~~w~v~~  221 (541)
T KOG4547|consen  215 TVWVVEK  221 (541)
T ss_pred             eEEEEEc
Confidence            5555554

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=97.19  E-value=0.0036  Score=59.13  Aligned_cols=144  Identities=15%  Similarity=0.113  Sum_probs=90.7

Q ss_pred             CCCEEEEE---eCCcEEEEECCCCce-EEEe------------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971          429 KGDRIAFV---EFPGVYVVNSDGSNR-RQVY------------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI  492 (721)
Q Consensus       429 DG~~la~~---~~~~l~v~d~~~g~~-~~l~------------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~  492 (721)
                      +++++...   ..+.+.+||+.++.. .++.            .+.+.++.+.+.-.+=+.       .....+.-.|.+
T Consensus       162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGis-------gga~dkl~~~Sl  234 (323)
T KOG0322|consen  162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGIS-------GGADDKLVMYSL  234 (323)
T ss_pred             ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcC-------CCccccceeeee
Confidence            45554443   477899999988732 1111            233344444322111111       012455666777


Q ss_pred             EccCCC-CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCE
Q 004971          493 NVDDVD-GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW  571 (721)
Q Consensus       493 ~~~~~~-~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~  571 (721)
                      +-..+. .-.....+..  -.+....+-||+|-++.+..   +.+|++++..+..+  +..|..+...++.++|+||-..
T Consensus       235 ~~s~gslq~~~e~~lkn--pGv~gvrIRpD~KIlATAGW---D~RiRVyswrtl~p--LAVLkyHsagvn~vAfspd~~l  307 (323)
T KOG0322|consen  235 NHSTGSLQIRKEITLKN--PGVSGVRIRPDGKILATAGW---DHRIRVYSWRTLNP--LAVLKYHSAGVNAVAFSPDCEL  307 (323)
T ss_pred             ccccCcccccceEEecC--CCccceEEccCCcEEeeccc---CCcEEEEEeccCCc--hhhhhhhhcceeEEEeCCCCch
Confidence            655321 0111122222  24567889999999999988   78899999988886  7777778888899999999888


Q ss_pred             EEEEEccCCCCCCceeEEEEec
Q 004971          572 IAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       572 l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                      +|.++.+.       +|-+|++
T Consensus       308 mAaaskD~-------rISLWkL  322 (323)
T KOG0322|consen  308 MAAASKDA-------RISLWKL  322 (323)
T ss_pred             hhhccCCc-------eEEeeec
Confidence            88888775       7888875

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=97.14  E-value=0.017  Score=64.74  Aligned_cols=178  Identities=15%  Similarity=0.038  Sum_probs=115.3

Q ss_pred             eCcCCCEEEEE-eCCcEEEEECCCCce-EEEe-ec-----CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971          426 FSPKGDRIAFV-EFPGVYVVNSDGSNR-RQVY-FK-----NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV  497 (721)
Q Consensus       426 ~SpDG~~la~~-~~~~l~v~d~~~g~~-~~l~-~~-----~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~  497 (721)
                      +.-+.++++.. ..+.+.++|...+.. ..+. ..     ...-...+++.-+++..+       --+.+.+|....+. 
T Consensus        95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gs-------v~~~iivW~~~~dn-  166 (967)
T KOG0974|consen   95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGS-------VFGEIIVWKPHEDN-  166 (967)
T ss_pred             hhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecc-------ccccEEEEeccccC-
Confidence            34445566665 578889998876542 2222 11     111233445544555443       34678888877433 


Q ss_pred             CCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE-ECcCCCcCceeeEEccCCCEEEEEE
Q 004971          498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH-RLTEGPWSDTMCNWSPDGEWIAFAS  576 (721)
Q Consensus       498 ~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~-~l~~~~~~~~~~~~SpDG~~l~~~~  576 (721)
                          ...++..+.+....+.||-||++++..++   ++.+.+|++++++.  +. ....+...+....|.|.  .|+..+
T Consensus       167 ----~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd---DRsiRlW~i~s~~~--~~~~~fgHsaRvw~~~~~~n--~i~t~g  235 (967)
T KOG0974|consen  167 ----KPIRLKGHEGSIFSIVTSLDGRYIASVSD---DRSIRLWPIDSREV--LGCTGFGHSARVWACCFLPN--RIITVG  235 (967)
T ss_pred             ----CcceecccCCceEEEEEccCCcEEEEEec---Ccceeeeecccccc--cCcccccccceeEEEEeccc--eeEEec
Confidence                44478888999999999999999999998   88999999998874  22 33456667888999998  777777


Q ss_pred             ccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       577 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      .+-       ..++|+.++.+....... ....+..++..++.-.++...++++
T Consensus       236 edc-------tcrvW~~~~~~l~~y~~h-~g~~iw~~~~~~~~~~~vT~g~Ds~  281 (967)
T KOG0974|consen  236 EDC-------TCRVWGVNGTQLEVYDEH-SGKGIWKIAVPIGVIIKVTGGNDST  281 (967)
T ss_pred             cce-------EEEEEecccceehhhhhh-hhcceeEEEEcCCceEEEeeccCcc
Confidence            764       788887776555433221 2234556666655554555455544

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=97.05  E-value=0.1  Score=52.10  Aligned_cols=184  Identities=12%  Similarity=0.075  Sum_probs=104.7

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCC--CCcccCceeecCCCCEEEEEEecCCCCeee
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPP--GLHAFTPATSPGNNKFIAVATRRPTSSYRH  348 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sp~dG~~la~~~~~~g~~~~~  348 (721)
                      ...||.+++.+++  ...+....+|.+...    +...+.++.++..+  ...+..++|.- ..++ +|.    |....+
T Consensus        61 AlqFS~N~~~L~S--GGDD~~~~~W~~de~----~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~-~~S----G~~~~~  128 (609)
T KOG4227|consen   61 ALQFSHNDRFLAS--GGDDMHGRVWNVDEL----MVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRF-LYS----GERWGT  128 (609)
T ss_pred             eeeeccCCeEEee--cCCcceeeeechHHH----HhhcCCCCceeccCccccceEEEEEcc-CCee-Eec----CCCcce
Confidence            3478888887773  333667778855322    11112245555544  34566777865 4444 442    445667


Q ss_pred             EEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee---ccc--CCCC
Q 004971          349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL---FRF--DGSF  423 (721)
Q Consensus       349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~--~~~~  423 (721)
                      +.+.|+++.+..-+.......+.+.....+|-...++..+..+.         +.++++......+..   ...  .-..
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~---------V~~~D~Rd~~~~~~~~~~AN~~~~F~t  199 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKL---------VSFIDNRDRQNPISLVLPANSGKNFYT  199 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCce---------EEEEeccCCCCCCceeeecCCCcccee
Confidence            88999999886555554444567788888998777777665544         444554433211111   111  1122


Q ss_pred             ceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe-------ec---CceeeEEcCCCCeEEEEe
Q 004971          424 PSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY-------FK---NAFSTVWDPVREAVVYTS  475 (721)
Q Consensus       424 ~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~-------~~---~~~~~~~spdg~~la~~~  475 (721)
                      ..|+|-.-.|+.+  ....+-+||..-.....+.       ..   .-....|+|.|..+....
T Consensus       200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR  263 (609)
T KOG4227|consen  200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR  263 (609)
T ss_pred             eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh
Confidence            4677776665555  3566777776433211111       11   114578999999887664

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.04  E-value=0.33  Score=48.05  Aligned_cols=157  Identities=12%  Similarity=0.139  Sum_probs=90.5

Q ss_pred             ceeCcCCCEEEEEeCCcEEEEECCC--Cce--EEEe-------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971          424 PSFSPKGDRIAFVEFPGVYVVNSDG--SNR--RQVY-------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI  492 (721)
Q Consensus       424 ~~~SpDG~~la~~~~~~l~v~d~~~--g~~--~~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~  492 (721)
                      +.+..|++.+..+.+-.|-+|+++-  +..  ..+.       ...+++..|+|.-..+++-+      ...+.++|.++
T Consensus       170 IS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YS------SSKGtIrLcDm  243 (433)
T KOG1354|consen  170 ISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYS------SSKGTIRLCDM  243 (433)
T ss_pred             eeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEe------cCCCcEEEeec
Confidence            4566777776666666677777652  221  2222       23467788999765544443      36789999988


Q ss_pred             EccCC-CCccceEEcccCC----------CCCcceEEccCCCEEEEEEeeCCceeEEEEECCC-CcccceEECcCC----
Q 004971          493 NVDDV-DGVSAVRRLTTNG----------KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG-GEGYGLHRLTEG----  556 (721)
Q Consensus       493 ~~~~~-~~~~~~~~l~~~~----------~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~-g~~~~~~~l~~~----  556 (721)
                      ....- +...+.......+          ..+..+.||++|++|+..+    ...|.+||+.- .++  +....-+    
T Consensus       244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD----yltvk~wD~nme~~p--v~t~~vh~~lr  317 (433)
T KOG1354|consen  244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD----YLTVKLWDLNMEAKP--VETYPVHEYLR  317 (433)
T ss_pred             hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec----cceeEEEeccccCCc--ceEEeehHhHH
Confidence            73221 0000111111111          2456689999999998776    57888999842 222  3222211    


Q ss_pred             -----------CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971          557 -----------PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR  599 (721)
Q Consensus       557 -----------~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~  599 (721)
                                 .+.-....||-+++.+..++...       -..+++++.|..+
T Consensus       318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n-------~frvf~~~~gsk~  364 (433)
T KOG1354|consen  318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNN-------VFRVFNLARGSKE  364 (433)
T ss_pred             HHHHHHhhccchhheeEEEEcCCcceEecccccc-------eEEEecCCCCcce
Confidence                       12235678999998888777653       4556675555433

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=97.03  E-value=0.0011  Score=71.96  Aligned_cols=268  Identities=15%  Similarity=0.104  Sum_probs=141.5

Q ss_pred             EEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971          313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG  392 (721)
Q Consensus       313 ~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~  392 (721)
                      +++..|-..+.-+.|.. .|.+|+.     |.++.-+.+|..+++.  .+....+|.+.+...+.+-+...++..+.+.-
T Consensus       184 krLlgH~naVyca~fDr-tg~~Iit-----gsdd~lvKiwS~et~~--~lAs~rGhs~ditdlavs~~n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDR-TGRYIIT-----GSDDRLVKIWSMETAR--CLASCRGHSGDITDLAVSSNNTMIAAASNDKV  255 (1113)
T ss_pred             HHHHhhhhheeeeeecc-ccceEee-----cCccceeeeeeccchh--hhccCCCCccccchhccchhhhhhhhcccCce
Confidence            33444443455566877 8888877     4456668899987766  66666778888888888877766666554443


Q ss_pred             CCCCCCcceeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEeecCceeeEEcCCCCe
Q 004971          393 STREDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREA  470 (721)
Q Consensus       393 ~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~  470 (721)
                               |.++.+..+  ..-+....+.+..++|||--   ....++.+.+||..-. + .++.  ...+  +++++.
T Consensus       256 ---------IrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~-~-~~y~--prp~--~~~~~~  317 (1113)
T KOG0644|consen  256 ---------IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLE-P-RIYV--PRPL--KFTEKD  317 (1113)
T ss_pred             ---------EEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEecccccc-c-cccC--CCCC--Cccccc
Confidence                     344444433  22233333344556676632   1123556777765410 0 1110  0000  112222


Q ss_pred             EEEE----ecCCCCC--CCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCC
Q 004971          471 VVYT----SGGPEFA--SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG  544 (721)
Q Consensus       471 la~~----~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~  544 (721)
                      ++..    ..+..+.  ..++....|.+..-           .-..........+.|-..++....  .+..+..|++.+
T Consensus       318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l-----------~~~~~~lif~t~ssd~~~~~~~ar--~~~~~~vwnl~~  384 (1113)
T KOG0644|consen  318 LVDSILFENNGDRFLTGSRDGEARNHEFEQL-----------AWRSNLLIFVTRSSDLSSIVVTAR--NDHRLCVWNLYT  384 (1113)
T ss_pred             ceeeeeccccccccccccCCcccccchhhHh-----------hhhccceEEEeccccccccceeee--eeeEeeeeeccc
Confidence            2211    1110000  01222222222110           000001111222223333332221  145788899988


Q ss_pred             CcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEE
Q 004971          545 GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF  624 (721)
Q Consensus       545 g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~  624 (721)
                      |..  ...++.+......+.+.|=...|+......      ....+||+..|.+.+....+ .+....-.||+||+.++.
T Consensus       385 g~l--~H~l~ghsd~~yvLd~Hpfn~ri~msag~d------gst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~l  455 (1113)
T KOG0644|consen  385 GQL--LHNLMGHSDEVYVLDVHPFNPRIAMSAGYD------GSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIAL  455 (1113)
T ss_pred             chh--hhhhcccccceeeeeecCCCcHhhhhccCC------CceEeeecccCCcceeeecc-cceeeccccCCCCceEec
Confidence            874  444555555556788888877777766543      37889999888776665543 345566789999999887


Q ss_pred             EEec
Q 004971          625 TSDY  628 (721)
Q Consensus       625 ~~~~  628 (721)
                      ....
T Consensus       456 sd~h  459 (1113)
T KOG0644|consen  456 SDDH  459 (1113)
T ss_pred             CCCC
Confidence            5443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.03  E-value=0.017  Score=61.94  Aligned_cols=268  Identities=12%  Similarity=0.122  Sum_probs=133.7

Q ss_pred             cCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce----EEe---------ecccCCCCcccCcEEcCCCCEEEEEEe
Q 004971          323 FTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF----IEL---------TRFVSPKTHHLNPFISPDSSRVGYHKC  389 (721)
Q Consensus       323 ~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~----~~l---------~~~~~~~~~~~~~~~Spdg~~l~~~~~  389 (721)
                      .-+.|.. ...+|+.     |+.++-|.+..+.+...    +.+         ..+.+|...+..+.|..+.+.|-. ++
T Consensus        18 ~c~~WNk-e~gyIAc-----gG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt-SD   90 (1189)
T KOG2041|consen   18 HCAEWNK-ESGYIAC-----GGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT-SD   90 (1189)
T ss_pred             EEEEEcc-cCCeEEe-----ccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccc-cC
Confidence            4556766 6667776     34555577766654321    111         122445556666677766666543 22


Q ss_pred             eCCCCCCCCcceeEEEeccCC--CCccee--cccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCce--EEEeecCceee
Q 004971          390 RGGSTREDGNNQLLLENIKSP--LPDISL--FRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNR--RQVYFKNAFST  462 (721)
Q Consensus       390 ~~~~~~~~~~~~l~~~~~~~~--~~~~~~--~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~--~~l~~~~~~~~  462 (721)
                      ..+        -|.++-+-.+  ......  -..-+..+.|..||++|..+ .++.+.+=.++|...  +.+........
T Consensus        91 t~G--------lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv  162 (1189)
T KOG2041|consen   91 TSG--------LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHV  162 (1189)
T ss_pred             CCc--------eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccce
Confidence            222        1333333222  111110  01123457999999999888 577777777776542  23333345688


Q ss_pred             EEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc--cc-----------eEEcccCCCCCcceE-EccCCCEEEEE
Q 004971          463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV--SA-----------VRRLTTNGKNNAFPS-VSPDGKWIVFR  528 (721)
Q Consensus       463 ~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~-----------~~~l~~~~~~~~~~~-~SpDg~~l~~~  528 (721)
                      .||+|.+.++|..       .+++.+||+...+-...-  ..           ..++........... .-||--.|++.
T Consensus       163 ~ws~D~~~~Lf~~-------ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavc  235 (1189)
T KOG2041|consen  163 LWSEDLEQALFKK-------ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVC  235 (1189)
T ss_pred             eecccHHHHHhhh-------cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEE
Confidence            9999999888764       457777776543211000  00           011111110111111 22466666655


Q ss_pred             EeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCC--CCCceeEEEEecCCCceEEeeecCC
Q 004971          529 STRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP--GSGSFEMYLIHPNGTGLRKLIQSGS  606 (721)
Q Consensus       529 s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~--~~~~~~i~~~d~~~~~~~~l~~~~~  606 (721)
                      -. .|..+|.+- .+..+   +..+..+ ..+....|+++|..|+++..+.+.  ......|..|..-+.-...+-.  .
T Consensus       236 y~-nGr~QiMR~-eND~~---Pvv~dtg-m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkv--p  307 (1189)
T KOG2041|consen  236 YA-NGRMQIMRS-ENDPE---PVVVDTG-MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKV--P  307 (1189)
T ss_pred             Ec-Cceehhhhh-cCCCC---CeEEecc-cEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEec--C
Confidence            54 223334332 22223   2333333 445778999999999998876432  1122355555554432222221  2


Q ss_pred             CCCcCCeEECCCCC
Q 004971          607 AGRANHPYFSPDGK  620 (721)
Q Consensus       607 ~~~~~~~~~SpDG~  620 (721)
                      +..+..++|--.|-
T Consensus       308 g~~It~lsWEg~gL  321 (1189)
T KOG2041|consen  308 GSCITGLSWEGTGL  321 (1189)
T ss_pred             CceeeeeEEcCCce
Confidence            23345555544443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=97.01  E-value=0.097  Score=57.23  Aligned_cols=261  Identities=12%  Similarity=0.035  Sum_probs=142.0

Q ss_pred             eEEEEECCCCc-eEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc----ceec----c
Q 004971          348 HIELFDLVKNK-FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD----ISLF----R  418 (721)
Q Consensus       348 ~l~l~dl~tg~-~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~----~  418 (721)
                      .+++|++.... +....   .....+..+.|+|....++......+        ++.++++..+...    +...    +
T Consensus       223 ~~~vW~~~~p~~Pe~~~---~~~s~v~~~~f~p~~p~ll~gG~y~G--------qV~lWD~~~~~~~~~s~ls~~~~sh~  291 (555)
T KOG1587|consen  223 VLLVWSLKNPNTPELVL---ESPSEVTCLKFCPFDPNLLAGGCYNG--------QVVLWDLRKGSDTPPSGLSALEVSHS  291 (555)
T ss_pred             eEEEEecCCCCCceEEE---ecCCceeEEEeccCCcceEEeeccCc--------eEEEEEccCCCCCCCcccccccccCC
Confidence            47899988762 22222   12455777889998877777655554        4677777554321    1110    1


Q ss_pred             cCCCCceeCc--CCCEEEEE-eCCcEEEEECCCCce-EEEe--------------ecCceeeEEcCCCCeEEEEecCCCC
Q 004971          419 FDGSFPSFSP--KGDRIAFV-EFPGVYVVNSDGSNR-RQVY--------------FKNAFSTVWDPVREAVVYTSGGPEF  480 (721)
Q Consensus       419 ~~~~~~~~Sp--DG~~la~~-~~~~l~v~d~~~g~~-~~l~--------------~~~~~~~~~spdg~~la~~~~~~~~  480 (721)
                      .......|-.  .+..++.. .++.|..|+++.-.. ....              ......+.|.+.....+++..    
T Consensus       292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT----  367 (555)
T KOG1587|consen  292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT----  367 (555)
T ss_pred             cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc----
Confidence            1112233422  22223333 477787776653211 1000              123456777775554444431    


Q ss_pred             CCCCCcEEEEEEEccCCCCcc-----ceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC-CCcccceEECc
Q 004971          481 ASESSEVDIISINVDDVDGVS-----AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE-GGEGYGLHRLT  554 (721)
Q Consensus       481 ~~~~~~~~i~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~-~g~~~~~~~l~  554 (721)
                        +.  ..|+.....+.....     .......+.+.+....++|=+..++....   +..+.+|.-. ...+  +..+.
T Consensus       368 --e~--G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g---DW~vriWs~~~~~~P--l~~~~  438 (555)
T KOG1587|consen  368 --EE--GKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG---DWTVRIWSEDVIASP--LLSLD  438 (555)
T ss_pred             --CC--cEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec---cceeEeccccCCCCc--chhhh
Confidence              22  334443332210000     01123334456777788887777766665   7888888765 2221  33333


Q ss_pred             CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec-CCCCCcCCeEECCCCCEEEEEEecCCCcC
Q 004971          555 EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS-GSAGRANHPYFSPDGKSIVFTSDYGGISA  633 (721)
Q Consensus       555 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~  633 (721)
                      .....+..++|||---.++++.+..      ..|++||+.-.....+... ........+.|+++|+.|+.....+    
T Consensus       439 ~~~~~v~~vaWSptrpavF~~~d~~------G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G----  508 (555)
T KOG1587|consen  439 SSPDYVTDVAWSPTRPAVFATVDGD------GNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANG----  508 (555)
T ss_pred             hccceeeeeEEcCcCceEEEEEcCC------CceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCC----
Confidence            3334478899999866555555432      3899999966544333221 1233456788999999998766655    


Q ss_pred             CCCCCCCCCCCCccEEEEEcCC
Q 004971          634 EPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       634 ~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                                   +++++++..
T Consensus       509 -------------~~~~~~l~~  517 (555)
T KOG1587|consen  509 -------------TTHILKLSE  517 (555)
T ss_pred             -------------cEEEEEcCc
Confidence                         488888743

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.98  E-value=0.7  Score=49.41  Aligned_cols=95  Identities=17%  Similarity=0.183  Sum_probs=47.9

Q ss_pred             CCCEEEEE-eCCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccce
Q 004971          429 KGDRIAFV-EFPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAV  503 (721)
Q Consensus       429 DG~~la~~-~~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  503 (721)
                      ++.+|++. .++.|+.+|..+|+...-.    ......+..  .+.+|++..       .++.  |+.++...+   ...
T Consensus       293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~-------~~G~--l~~ld~~tG---~~~  358 (394)
T PRK11138        293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGD-------SEGY--LHWINREDG---RFV  358 (394)
T ss_pred             ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEe-------CCCE--EEEEECCCC---CEE
Confidence            35566666 4788999999888753322    111222332  244566554       2343  444554443   122


Q ss_pred             EEcccC-CCCCcceEEccCCCEEEEEEeeCCceeEEEEEC
Q 004971          504 RRLTTN-GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA  542 (721)
Q Consensus       504 ~~l~~~-~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~  542 (721)
                      .+.... ......|.+.  +.+|++.+.   +..||.+++
T Consensus       359 ~~~~~~~~~~~s~P~~~--~~~l~v~t~---~G~l~~~~~  393 (394)
T PRK11138        359 AQQKVDSSGFLSEPVVA--DDKLLIQAR---DGTVYAITR  393 (394)
T ss_pred             EEEEcCCCcceeCCEEE--CCEEEEEeC---CceEEEEeC
Confidence            222111 1223344543  446777765   667887754

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=96.93  E-value=0.049  Score=53.63  Aligned_cols=180  Identities=12%  Similarity=0.076  Sum_probs=107.1

Q ss_pred             EEEEE-eCCcEEEEECCCCceEEEe---ecCceeeEEcCC-CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE-
Q 004971          432 RIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPV-REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR-  505 (721)
Q Consensus       432 ~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spd-g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-  505 (721)
                      .+|+. +.+.+.+||..++......   +.....+.|..+ +-..+++.      ..++.+++|++.....    ..+. 
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~------ssDG~Vr~wD~Rs~~e----~a~~~  111 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISC------SSDGTVRLWDIRSQAE----SARIS  111 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEe------ccCCeEEEEEeecchh----hhhee
Confidence            34444 7889999999887654444   344456666553 44555544      3689999999998763    2222 


Q ss_pred             cccCCCCCcceEEcc--CCCEEEEEEeeC-CceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCC-EEEEEEccCC
Q 004971          506 LTTNGKNNAFPSVSP--DGKWIVFRSTRT-GYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGE-WIAFASDRDN  580 (721)
Q Consensus       506 l~~~~~~~~~~~~Sp--Dg~~l~~~s~~~-g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~-~l~~~~~~~~  580 (721)
                      .+... ......|.-  .++.++...... .+..|++||+...+. .+..+. .+..+++.+.|.|..- .|+.++-++ 
T Consensus       112 ~~~~~-~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq-~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG-  188 (376)
T KOG1188|consen  112 WTQQS-GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ-LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG-  188 (376)
T ss_pred             ccCCC-CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccc-hhhhhhhhccCcceeEEecCCCCCeEEeecccc-
Confidence            22222 112223332  455666655433 356899999986541 134443 4566789999999765 455555553 


Q ss_pred             CCCCceeEEEEecCCCceE-Eeee-cCCCCCcCCeEECCCC-CEEEEEEecCC
Q 004971          581 PGSGSFEMYLIHPNGTGLR-KLIQ-SGSAGRANHPYFSPDG-KSIVFTSDYGG  630 (721)
Q Consensus       581 ~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~~~~~~~SpDG-~~l~~~~~~~~  630 (721)
                            -+-++|+...... .|.. ..+...+..+.|.-++ +.|+..+...+
T Consensus       189 ------LvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et  235 (376)
T KOG1188|consen  189 ------LVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET  235 (376)
T ss_pred             ------eEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc
Confidence                  6777787554211 1211 1144557788999888 45777777664

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.92  E-value=0.28  Score=47.98  Aligned_cols=191  Identities=16%  Similarity=0.177  Sum_probs=100.1

Q ss_pred             CCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971          421 GSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD  495 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~  495 (721)
                      ...++|.||.+.|+.+.  ...|+.++.++...+.+.   .+....+++.-++++++ +.      ...+.+.++.++..
T Consensus        24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl-~~------Er~~~L~~~~~~~~   96 (248)
T PF06977_consen   24 LSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVL-SE------ERDQRLYIFTIDDD   96 (248)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEE-EE------TTTTEEEEEEE---
T ss_pred             ccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEE-EE------cCCCcEEEEEEecc
Confidence            34579999988887774  667888998766566665   34556788877775444 43      23456666666544


Q ss_pred             CCCC-ccceEEcc--cC---CCCCcceEEccCCCEEEEEEeeCCceeEEEEEC--CCCcccceEE--Cc---CCCcCcee
Q 004971          496 DVDG-VSAVRRLT--TN---GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA--EGGEGYGLHR--LT---EGPWSDTM  562 (721)
Q Consensus       496 ~~~~-~~~~~~l~--~~---~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~--~~g~~~~~~~--l~---~~~~~~~~  562 (721)
                      +... ....+.+.  ..   ....-.++|.|.++.|+++.++. ...||-++.  ..........  +.   ........
T Consensus        97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~-P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~  175 (248)
T PF06977_consen   97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK-PKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG  175 (248)
T ss_dssp             -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESS-SEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred             ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC-ChhhEEEccccCccceeeccccccccccceeccccc
Confidence            3210 01112222  11   12346789999999999887642 346777776  2111100000  11   11233567


Q ss_pred             eEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC--------CCCcCCeEECCCCCEEEEEEe
Q 004971          563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS--------AGRANHPYFSPDGKSIVFTSD  627 (721)
Q Consensus       563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~--------~~~~~~~~~SpDG~~l~~~~~  627 (721)
                      +++.|....|++.+...      ..|..+|.++ ++........        -.....++|.+||+ ||..+.
T Consensus       176 l~~~p~t~~lliLS~es------~~l~~~d~~G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsE  240 (248)
T PF06977_consen  176 LSYDPRTGHLLILSDES------RLLLELDRQG-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSE  240 (248)
T ss_dssp             EEEETTTTEEEEEETTT------TEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEET
T ss_pred             eEEcCCCCeEEEEECCC------CeEEEECCCC-CEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcC
Confidence            88999988888887664      3789999655 4433322111        12356789999995 555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=96.92  E-value=0.0094  Score=62.27  Aligned_cols=241  Identities=12%  Similarity=0.048  Sum_probs=134.1

Q ss_pred             ccCceeecCCCCEEEEEEecCCCCeeeEEEEECC------CCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971          322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLV------KNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR  395 (721)
Q Consensus       322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~------tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~  395 (721)
                      +....|.| ....|+.++     .++.|.+|+++      .....++..+..|.+.+.+++++++++.++....++.   
T Consensus       297 ir~l~~~~-sep~lit~s-----ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~---  367 (577)
T KOG0642|consen  297 IRALAFHP-SEPVLITAS-----EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT---  367 (577)
T ss_pred             hhhhhcCC-CCCeEEEec-----cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce---
Confidence            34556666 555555533     44558889882      2334567777888888899999999999998887776   


Q ss_pred             CCCcceeEEEeccC-------C---CCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe----ecCce
Q 004971          396 EDGNNQLLLENIKS-------P---LPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY----FKNAF  460 (721)
Q Consensus       396 ~~~~~~l~~~~~~~-------~---~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~----~~~~~  460 (721)
                          .+.|-.....       +   ...+..+......+++|....+|+.+ .++.++.|......+....    .+...
T Consensus       368 ----I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  368 ----IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPL  443 (577)
T ss_pred             ----eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcc
Confidence                2333221100       0   01111111222345777777777776 5889999988766652222    22333


Q ss_pred             eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-------CCCcceEEccCCCEEEEEEeeCC
Q 004971          461 STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-------KNNAFPSVSPDGKWIVFRSTRTG  533 (721)
Q Consensus       461 ~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~SpDg~~l~~~s~~~g  533 (721)
                      .+.+....-.+.+++.      ..+...++.+.+..     ....+....       .......+.|.+...+..-.   
T Consensus       444 svd~~ss~~a~~~~s~------~~~~~~~~~~ev~s-----~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he---  509 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASF------RFGYTSIDDMEVVS-----DLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE---  509 (577)
T ss_pred             eEeeccchhHhhhhhc------ccccccchhhhhhh-----heeeccccCCCcccccCccceEEecCCCCeeEeccc---
Confidence            3333211111111110      11222222222211     111111110       12233566676654433333   


Q ss_pred             ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971          534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL  598 (721)
Q Consensus       534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~  598 (721)
                      +..|..+|..+++.  +.....+...+..+++.|+|-+|...+.+.       .+.+|.++...+
T Consensus       510 d~~Ir~~dn~~~~~--l~s~~a~~~svtslai~~ng~~l~s~s~d~-------sv~l~kld~k~~  565 (577)
T KOG0642|consen  510 DRSIRFFDNKTGKI--LHSMVAHKDSVTSLAIDPNGPYLMSGSHDG-------SVRLWKLDVKTC  565 (577)
T ss_pred             CCceeccccccccc--chheeeccceecceeecCCCceEEeecCCc-------eeehhhccchhe
Confidence            67888899888875  444445556678899999999998888775       788887766543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=96.91  E-value=0.018  Score=59.26  Aligned_cols=284  Identities=11%  Similarity=0.062  Sum_probs=148.9

Q ss_pred             eCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCC--CEEEEEEeeCC
Q 004971          315 VTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDS--SRVGYHKCRGG  392 (721)
Q Consensus       315 ~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg--~~l~~~~~~~~  392 (721)
                      +..+..-+..+.|.. .|+.|+.     ++++..+.+||..+++. .+....+|...+....|-|..  +.|+....++.
T Consensus       138 L~~H~GcVntV~FN~-~Gd~l~S-----gSDD~~vv~WdW~~~~~-~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQ-RGDVLAS-----GSDDLQVVVWDWVSGSP-KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             ccCCCCccceeeecc-cCceeec-----cCccceEEeehhhccCc-ccccccccccchhhhhccCCCCCcCceeccccCc
Confidence            444555566778888 8988876     55778899999998864 333334555566666666643  45555444444


Q ss_pred             CCCCCCcceeEEEeccCC---CCcceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe-------e--cC
Q 004971          393 STREDGNNQLLLENIKSP---LPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY-------F--KN  458 (721)
Q Consensus       393 ~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~-------~--~~  458 (721)
                             .++-.....+.   .+.+........-++.-|+..+-.+.  .+..+.-+|+..+.+....       .  -.
T Consensus       211 -------vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~  283 (559)
T KOG1334|consen  211 -------VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVG  283 (559)
T ss_pred             -------eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcccee
Confidence                   22211111111   11222222223334555665444443  3556677777666543322       1  12


Q ss_pred             ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC------CccceEEccc-CCCCCcceEEccCCCEEEEEEee
Q 004971          459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD------GVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTR  531 (721)
Q Consensus       459 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~  531 (721)
                      ...++..|-....+.+..      .+...++|+...-...      ....+..|.. ....+..++|+.|+.-|....+ 
T Consensus       284 L~~Ia~~P~nt~~faVgG------~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-  356 (559)
T KOG1334|consen  284 LYTIAVDPRNTNEFAVGG------SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN-  356 (559)
T ss_pred             eeeEecCCCCccccccCC------hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec-
Confidence            335556665553333321      2334445543321110      0001122222 2256677899988888877766 


Q ss_pred             CCceeEEEEECCCCcc----------cceEECcCCC---cCceee-EEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971          532 TGYKNLYIMDAEGGEG----------YGLHRLTEGP---WSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG  597 (721)
Q Consensus       532 ~g~~~l~~~d~~~g~~----------~~~~~l~~~~---~~~~~~-~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~  597 (721)
                        +..||++...-+..          ..++++..+.   ..+..+ -|-|...+++.+++-+       +||+|+-.+++
T Consensus       357 --De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCG-------hIFiW~K~t~e  427 (559)
T KOG1334|consen  357 --DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCG-------HIFIWDKKTGE  427 (559)
T ss_pred             --ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccc-------eEEEEecchhH
Confidence              67899885432221          0112212221   112233 3678888887777664       89999998887


Q ss_pred             eEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       598 ~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      ..++... ....++.+.-.|---.|+...-+.
T Consensus       428 ii~~Meg-Dr~VVNCLEpHP~~PvLAsSGid~  458 (559)
T KOG1334|consen  428 IIRFMEG-DRHVVNCLEPHPHLPVLASSGIDH  458 (559)
T ss_pred             HHHHhhc-ccceEeccCCCCCCchhhccCCcc
Confidence            7666543 333555555555444555544443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.90  E-value=0.68  Score=53.63  Aligned_cols=230  Identities=10%  Similarity=0.078  Sum_probs=117.4

Q ss_pred             cCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEE
Q 004971          175 SGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIF  254 (721)
Q Consensus       175 dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~  254 (721)
                      |+..|.++...|          .+..+++.+....-++.-.......+||||++++++++.+            ..|+++
T Consensus        79 d~~~i~v~~~~G----------~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~------------~tll~m  136 (1265)
T KOG1920|consen   79 DTNSICVITALG----------DIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGR------------QTLLFM  136 (1265)
T ss_pred             ccceEEEEecCC----------cEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCC------------cEEEEE
Confidence            566677766553          6778888887777776655555666999999999998633            345444


Q ss_pred             EcC--CCceeEEEecc--CC---cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCcee
Q 004971          255 LTR--DGTQRVKIVEN--GG---WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPAT  327 (721)
Q Consensus       255 d~~--~g~~~~l~~~~--~~---~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (721)
                      .-.  -=..+.+-.+.  .+   ...|-...+ -|. .+  .|............        ...++ ...-.-..+.|
T Consensus       137 T~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeT-qfr-gs--~gr~~~~~~~~~ek--------~~~~~-~~~~~~~~IsW  203 (1265)
T KOG1920|consen  137 TKDFEPIAEKPLDADDERKSKFVNVGWGRKET-QFR-GS--EGRQAARQKIEKEK--------ALEQI-EQDDHKTSISW  203 (1265)
T ss_pred             eccccchhccccccccccccccceecccccce-eee-cc--hhhhcccccccccc--------cccch-hhccCCceEEE
Confidence            321  01112221000  00   112322111 110 00  11110000000000        00000 01112245788


Q ss_pred             ecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEec
Q 004971          328 SPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI  407 (721)
Q Consensus       328 sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  407 (721)
                      -- ||++++..........+.|.+||.+ |........  ..+....++|-|.|..++........      ..+.+..-
T Consensus       204 Rg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~--~~~l~~~LsWkPsgs~iA~iq~~~sd------~~IvffEr  273 (1265)
T KOG1920|consen  204 RG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEP--VEGLQHSLSWKPSGSLIAAIQCKTSD------SDIVFFER  273 (1265)
T ss_pred             cc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCc--ccccccceeecCCCCeEeeeeecCCC------CcEEEEec
Confidence            77 9999887554444444779999987 543222211  12334468999999999887666553      22333322


Q ss_pred             cCCCCc-----ceecccCCCCceeCcCCCEEEEE---e-CCcEEEEECCCC
Q 004971          408 KSPLPD-----ISLFRFDGSFPSFSPKGDRIAFV---E-FPGVYVVNSDGS  449 (721)
Q Consensus       408 ~~~~~~-----~~~~~~~~~~~~~SpDG~~la~~---~-~~~l~v~d~~~g  449 (721)
                      .+-...     ..........++|+.++..||..   . ...|.+|....-
T Consensus       274 NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  274 NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            221110     11111124568999999999885   2 445888876543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.88  E-value=0.016  Score=62.08  Aligned_cols=183  Identities=13%  Similarity=0.122  Sum_probs=104.5

Q ss_pred             CceeCcCCCEEEEEe-CCcEEEEECCCCce--EEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          423 FPSFSPKGDRIAFVE-FPGVYVVNSDGSNR--RQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       423 ~~~~SpDG~~la~~~-~~~l~v~d~~~g~~--~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      .+.|..+.+.|.... .+-|.+|-+-.|..  ..+.   ...+.++.|.-||++|.++-       .++.+.+=.++-+.
T Consensus        76 vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvY-------eDGavIVGsvdGNR  148 (1189)
T KOG2041|consen   76 VVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVY-------EDGAVIVGSVDGNR  148 (1189)
T ss_pred             EEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEE-------ccCCEEEEeeccce
Confidence            356776666666553 56677776654431  1111   34567899999999999885       45666555544321


Q ss_pred             CCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce-----EECcCC----CcCceeeEE--
Q 004971          497 VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL-----HRLTEG----PWSDTMCNW--  565 (721)
Q Consensus       497 ~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~-----~~l~~~----~~~~~~~~~--  565 (721)
                      -  .+  +.|.  .....++.||+|.+.++|.-.   +..+.++|.++.-..++     ...+..    +..+..+.|  
T Consensus       149 I--wg--KeLk--g~~l~hv~ws~D~~~~Lf~~a---nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~  219 (1189)
T KOG2041|consen  149 I--WG--KELK--GQLLAHVLWSEDLEQALFKKA---NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNT  219 (1189)
T ss_pred             e--cc--hhcc--hheccceeecccHHHHHhhhc---CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeecc
Confidence            0  00  1111  123347899999999988866   56677777664321000     111110    111222222  


Q ss_pred             ------ccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          566 ------SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       566 ------SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                            -||--.|+++..++     ..+|.+-. ...++..+ .  .+-.+....|+++|..|++...+..
T Consensus       220 g~~~~v~pdrP~lavcy~nG-----r~QiMR~e-ND~~Pvv~-d--tgm~~vgakWnh~G~vLAvcG~~~d  281 (1189)
T KOG2041|consen  220 GPYQPVPPDRPRLAVCYANG-----RMQIMRSE-NDPEPVVV-D--TGMKIVGAKWNHNGAVLAVCGNDSD  281 (1189)
T ss_pred             CccccCCCCCCEEEEEEcCc-----eehhhhhc-CCCCCeEE-e--cccEeecceecCCCcEEEEccCccc
Confidence                  35777888888763     33443322 23333333 2  3456678999999999999887764

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.84  E-value=0.12  Score=59.42  Aligned_cols=192  Identities=14%  Similarity=0.224  Sum_probs=113.4

Q ss_pred             ceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEE-------
Q 004971          424 PSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN-------  493 (721)
Q Consensus       424 ~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~-------  493 (721)
                      +.|-.|+..|.++ ..+.|.+.|..+.....+.  ..++..+.||||++.+++++.+       .++.+...+       
T Consensus        74 ~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~-------~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   74 VQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGR-------QTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             EEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCC-------cEEEEEeccccchhcc
Confidence            3455556566665 5778888888777655554  6788899999999999998742       111111111       


Q ss_pred             -c----cCC-----CCcc-ceEEcccC---------------------CCCCcceEEccCCCEEEEEEeeC--CceeEEE
Q 004971          494 -V----DDV-----DGVS-AVRRLTTN---------------------GKNNAFPSVSPDGKWIVFRSTRT--GYKNLYI  539 (721)
Q Consensus       494 -~----~~~-----~~~~-~~~~l~~~---------------------~~~~~~~~~SpDg~~l~~~s~~~--g~~~l~~  539 (721)
                       +    ...     .+++ +.+++...                     ........|--||+++++..-..  +...|.+
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence             0    000     0000 01111100                     01223478999999999865432  3478999


Q ss_pred             EECCCCcccceEECcCC-CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE--eeecCCCCCcCCeEEC
Q 004971          540 MDAEGGEGYGLHRLTEG-PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK--LIQSGSAGRANHPYFS  616 (721)
Q Consensus       540 ~d~~~g~~~~~~~l~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~--l~~~~~~~~~~~~~~S  616 (721)
                      ||.+ |.   +...... .+-...++|-|.|..|+......    ....|..+.-+|-+-..  +........+..++|.
T Consensus       227 ~drE-g~---Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~----sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wn  298 (1265)
T KOG1920|consen  227 YDRE-GA---LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKT----SDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWN  298 (1265)
T ss_pred             eccc-ch---hhcccCcccccccceeecCCCCeEeeeeecC----CCCcEEEEecCCccccccccCCcccccchheeeec
Confidence            9988 54   2222221 22335799999999999887764    33368888765533221  1111122337889999


Q ss_pred             CCCCEEEEEEecCC
Q 004971          617 PDGKSIVFTSDYGG  630 (721)
Q Consensus       617 pDG~~l~~~~~~~~  630 (721)
                      .++..|+.......
T Consensus       299 s~sdiLAv~~~~~e  312 (1265)
T KOG1920|consen  299 SNSDILAVVTSNLE  312 (1265)
T ss_pred             CCCCceeeeecccc
Confidence            99999988555443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=96.82  E-value=0.0066  Score=57.39  Aligned_cols=63  Identities=17%  Similarity=0.136  Sum_probs=50.2

Q ss_pred             ceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       560 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      +..+..-||+|.+|.+..++       +|.+|+-.+..+..+... |...+..++||||-..++.++.+..
T Consensus       254 v~gvrIRpD~KIlATAGWD~-------RiRVyswrtl~pLAVLky-Hsagvn~vAfspd~~lmAaaskD~r  316 (323)
T KOG0322|consen  254 VSGVRIRPDGKILATAGWDH-------RIRVYSWRTLNPLAVLKY-HSAGVNAVAFSPDCELMAAASKDAR  316 (323)
T ss_pred             ccceEEccCCcEEeecccCC-------cEEEEEeccCCchhhhhh-hhcceeEEEeCCCCchhhhccCCce
Confidence            47788999999999999885       566666677776666654 7788999999999888887777653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.80  E-value=0.063  Score=57.47  Aligned_cols=208  Identities=10%  Similarity=0.027  Sum_probs=96.3

Q ss_pred             cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEE-ECCC
Q 004971          371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVV-NSDG  448 (721)
Q Consensus       371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~-d~~~  448 (721)
                      ....+.++|+|+.++. ..++.         ..+......   .......+..++|++.++ +|+. ....|.++ +++.
T Consensus        34 ~p~~ls~npngr~v~V-~g~ge---------Y~iyt~~~~---r~k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLV-CGDGE---------YEIYTALAW---RNKAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             --SEEEE-TTSSEEEE-EETTE---------EEEEETTTT---EEEEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE
T ss_pred             CCeeEEECCCCCEEEE-EcCCE---------EEEEEccCC---cccccCceeEEEEecCcc-EEEEECCCeEEEEEcCcc
Confidence            3567889999999888 22222         223321111   111123355678998665 4444 46667774 4433


Q ss_pred             CceEEEeec-CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEE
Q 004971          449 SNRRQVYFK-NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF  527 (721)
Q Consensus       449 g~~~~l~~~-~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~  527 (721)
                      ...+.+... .+..+..   |..|.+.+        ++.+.+|++....     .++++.-.  .+..+.||+||+++++
T Consensus       100 ~~~k~i~~~~~~~~If~---G~LL~~~~--------~~~i~~yDw~~~~-----~i~~i~v~--~vk~V~Ws~~g~~val  161 (443)
T PF04053_consen  100 EVVKSIKLPFSVEKIFG---GNLLGVKS--------SDFICFYDWETGK-----LIRRIDVS--AVKYVIWSDDGELVAL  161 (443)
T ss_dssp             -TT-----SS-EEEEE----SSSEEEEE--------TTEEEEE-TTT-------EEEEESS---E-EEEEE-TTSSEEEE
T ss_pred             ccceEEcCCcccceEEc---CcEEEEEC--------CCCEEEEEhhHcc-----eeeEEecC--CCcEEEEECCCCEEEE
Confidence            332333322 1222222   87777765        2346677665432     44555432  2577899999999999


Q ss_pred             EEeeCCceeEEEEECCCC---------cccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971          528 RSTRTGYKNLYIMDAEGG---------EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL  598 (721)
Q Consensus       528 ~s~~~g~~~l~~~d~~~g---------~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~  598 (721)
                      .+.    ..+|+++-+-.         -......+.+-...+.+..|.-|  -++|+...        +|..  +-+|+.
T Consensus       162 ~t~----~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~--------~lkY--l~~Ge~  225 (443)
T PF04053_consen  162 VTK----DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN--------HLKY--LVNGET  225 (443)
T ss_dssp             E-S-----SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT--------EEEE--EETTEE
T ss_pred             EeC----CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC--------eEEE--EEcCCc
Confidence            984    56776654422         11113444432344567888765  66666654        4544  345555


Q ss_pred             EEeeecCCCCCcCCeEECCCCCEEEEEEec
Q 004971          599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDY  628 (721)
Q Consensus       599 ~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~  628 (721)
                      ..+..  ......-+...|....|++...+
T Consensus       226 ~~i~~--ld~~~yllgy~~~~~~ly~~Dr~  253 (443)
T PF04053_consen  226 GIIAH--LDKPLYLLGYLPKENRLYLIDRD  253 (443)
T ss_dssp             EEEEE---SS--EEEEEETTTTEEEEE-TT
T ss_pred             ceEEE--cCCceEEEEEEccCCEEEEEECC
Confidence            44433  12233344455544555544433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.78  E-value=0.11  Score=55.74  Aligned_cols=212  Identities=13%  Similarity=0.164  Sum_probs=102.9

Q ss_pred             CcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971          320 LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN  399 (721)
Q Consensus       320 ~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~  399 (721)
                      .....+.++| +|+.++.  ...+    ...++.....+.+.       .+....+.|++.+++.+. ..  .       
T Consensus        33 ~~p~~ls~np-ngr~v~V--~g~g----eY~iyt~~~~r~k~-------~G~g~~~vw~~~n~yAv~-~~--~-------   88 (443)
T PF04053_consen   33 IYPQSLSHNP-NGRFVLV--CGDG----EYEIYTALAWRNKA-------FGSGLSFVWSSRNRYAVL-ES--S-------   88 (443)
T ss_dssp             S--SEEEE-T-TSSEEEE--EETT----EEEEEETTTTEEEE-------EEE-SEEEE-TSSEEEEE--T--T-------
T ss_pred             cCCeeEEECC-CCCEEEE--EcCC----EEEEEEccCCcccc-------cCceeEEEEecCccEEEE-EC--C-------
Confidence            3456788999 9999887  3222    25566533222211       123345889986653333 22  2       


Q ss_pred             ceeEE-EeccCCC-CcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCce-EEEeecCceeeEEcCCCCeEEEEec
Q 004971          400 NQLLL-ENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNR-RQVYFKNAFSTVWDPVREAVVYTSG  476 (721)
Q Consensus       400 ~~l~~-~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~spdg~~la~~~~  476 (721)
                      ..+.+ .++.... ..+.. +..... -|.  |..|...+...|.+||..+++. +++.-..+..+.||++|+.+++.+ 
T Consensus        89 ~~I~I~kn~~~~~~k~i~~-~~~~~~-If~--G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t-  163 (443)
T PF04053_consen   89 STIKIYKNFKNEVVKSIKL-PFSVEK-IFG--GNLLGVKSSDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVT-  163 (443)
T ss_dssp             S-EEEEETTEE-TT------SS-EEE-EE---SSSEEEEETTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE--
T ss_pred             CeEEEEEcCccccceEEcC-Ccccce-EEc--CcEEEEECCCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEe-
Confidence            22334 4443322 12211 110110 122  7777777777799999998874 444433378999999999999986 


Q ss_pred             CCCCCCCCCcEEEEEEEcc------CCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce
Q 004971          477 GPEFASESSEVDIISINVD------DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL  550 (721)
Q Consensus       477 ~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~  550 (721)
                             +..+.|+..+.+      ..+.......+..-...+.+..|--|  -++|++.   . +|.-  +-+|+...+
T Consensus       164 -------~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~---~-~lkY--l~~Ge~~~i  228 (443)
T PF04053_consen  164 -------KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTS---N-HLKY--LVNGETGII  228 (443)
T ss_dssp             -------S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-T---T-EEEE--EETTEEEEE
T ss_pred             -------CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcC---C-eEEE--EEcCCcceE
Confidence                   467888888875      11011123334432346777888766  6777764   3 6655  345663334


Q ss_pred             EECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971          551 HRLTEGPWSDTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       551 ~~l~~~~~~~~~~~~SpDG~~l~~~~~~  578 (721)
                      ..+..   ...-+...|..+.|++...+
T Consensus       229 ~~ld~---~~yllgy~~~~~~ly~~Dr~  253 (443)
T PF04053_consen  229 AHLDK---PLYLLGYLPKENRLYLIDRD  253 (443)
T ss_dssp             EE-SS-----EEEEEETTTTEEEEE-TT
T ss_pred             EEcCC---ceEEEEEEccCCEEEEEECC
Confidence            44432   23445666666666666655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.75  E-value=0.21  Score=48.78  Aligned_cols=166  Identities=13%  Similarity=0.212  Sum_probs=99.9

Q ss_pred             cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCce
Q 004971          457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYK  535 (721)
Q Consensus       457 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~  535 (721)
                      ..+..+.|+||.+.|+.+.        +....|..++..+.    -++++.... .......|.-+|++++ +.++  ..
T Consensus        86 ~nvS~LTynp~~rtLFav~--------n~p~~iVElt~~Gd----lirtiPL~g~~DpE~Ieyig~n~fvi-~dER--~~  150 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVT--------NKPAAIVELTKEGD----LIRTIPLTGFSDPETIEYIGGNQFVI-VDER--DR  150 (316)
T ss_pred             ccccceeeCCCcceEEEec--------CCCceEEEEecCCc----eEEEecccccCChhHeEEecCCEEEE-Eehh--cc
Confidence            4578999999999999886        35567788888774    566665544 3445578887776554 4444  45


Q ss_pred             eEEEEECCCCcc--c--c-eEECcC--C-CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE-EeeecCC
Q 004971          536 NLYIMDAEGGEG--Y--G-LHRLTE--G-PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR-KLIQSGS  606 (721)
Q Consensus       536 ~l~~~d~~~g~~--~--~-~~~l~~--~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~  606 (721)
                      .|+++.++.+..  .  . ...|..  . +-....++|+|..+.|++...+     ....||.++....... .......
T Consensus       151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr-----~P~~I~~~~~~~~~l~~~~~~~~~  225 (316)
T COG3204         151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER-----NPIGIFEVTQSPSSLSVHASLDPT  225 (316)
T ss_pred             eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc-----CCcEEEEEecCCcccccccccCcc
Confidence            666655543321  0  0 011111  1 2224679999999999999887     3458888874331111 1110000


Q ss_pred             ------CCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe
Q 004971          607 ------AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL  658 (721)
Q Consensus       607 ------~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  658 (721)
                            -..+..+.|.+.-..|++.+..+.                .|..+|++|.-.
T Consensus       226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr----------------~l~Evd~~G~~~  267 (316)
T COG3204         226 ADRDLFVLDVSGLEFNAITNSLLVLSDESR----------------RLLEVDLSGEVI  267 (316)
T ss_pred             cccceEeeccccceecCCCCcEEEEecCCc----------------eEEEEecCCCee
Confidence                  123456777776666766776664                377778777643

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=96.73  E-value=0.16  Score=50.09  Aligned_cols=179  Identities=16%  Similarity=0.157  Sum_probs=103.7

Q ss_pred             eeEEEEECCCCceEEeecccCCCCcccCcEEcCC-CCEEE-EEEeeCCCCCCCCcceeEEEeccCCCC-cceecccCC--
Q 004971          347 RHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD-SSRVG-YHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRFDG--  421 (721)
Q Consensus       347 ~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd-g~~l~-~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~--  421 (721)
                      +.+++||..+++  .+..+..+......+.|.-+ +-..+ .++.++.         +.+++++...+ .........  
T Consensus        50 gsv~lyd~~tg~--~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~---------Vr~wD~Rs~~e~a~~~~~~~~~~  118 (376)
T KOG1188|consen   50 GSVRLYDKGTGQ--LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGT---------VRLWDIRSQAESARISWTQQSGT  118 (376)
T ss_pred             CeEEEEeccchh--hhheecCCCCcccceEEecCCCCCeeEEeccCCe---------EEEEEeecchhhhheeccCCCCC
Confidence            459999999987  44455555666667777653 43444 3333333         34444443211 111111111  


Q ss_pred             CCceeCc--CCCEEEEE-----eCCcEEEEECCCCce--EEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEE
Q 004971          422 SFPSFSP--KGDRIAFV-----EFPGVYVVNSDGSNR--RQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDI  489 (721)
Q Consensus       422 ~~~~~Sp--DG~~la~~-----~~~~l~v~d~~~g~~--~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i  489 (721)
                      .+..+.-  .++.++..     ....|++||+.....  ..+.   ...++.+.|.|...-++.+.      .-++-+.|
T Consensus       119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG------SvDGLvnl  192 (376)
T KOG1188|consen  119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG------SVDGLVNL  192 (376)
T ss_pred             cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee------cccceEEe
Confidence            2223322  34444443     355789999865432  2332   56789999999877776665      35788889


Q ss_pred             EEEEccCCCCccceEEcccCCCCCcceEEccCC-CEEEEEEeeCCceeEEEEECCCCcc
Q 004971          490 ISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG-KWIVFRSTRTGYKNLYIMDAEGGEG  547 (721)
Q Consensus       490 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg-~~l~~~s~~~g~~~l~~~d~~~g~~  547 (721)
                      |++..+..  ...+..+..+...+....|.-++ ++|.+.+.   ...+++|+++.+..
T Consensus       193 fD~~~d~E--eDaL~~viN~~sSI~~igw~~~~ykrI~clTH---~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  193 FDTKKDNE--EDALLHVINHGSSIHLIGWLSKKYKRIMCLTH---METFAIYELEDGSE  246 (376)
T ss_pred             eecCCCcc--hhhHHHhhcccceeeeeeeecCCcceEEEEEc---cCceeEEEccCCCh
Confidence            88876532  11222223344456778899887 45777776   56788888887763

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=96.70  E-value=0.1  Score=49.80  Aligned_cols=145  Identities=10%  Similarity=0.046  Sum_probs=89.4

Q ss_pred             CCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC--CcCc
Q 004971          483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG--PWSD  560 (721)
Q Consensus       483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~--~~~~  560 (721)
                      .+...+++.++.+..     ...+-...-...++++|+|+++++...+   ..++++|.++..... +..+...  ...-
T Consensus       136 ndht~k~~~~~~~s~-----~~~~h~~~~~~ns~~~snd~~~~~~Vgd---s~~Vf~y~id~~sey-~~~~~~a~t~D~g  206 (344)
T KOG4532|consen  136 NDHTGKTMVVSGDSN-----KFAVHNQNLTQNSLHYSNDPSWGSSVGD---SRRVFRYAIDDESEY-IENIYEAPTSDHG  206 (344)
T ss_pred             CCcceeEEEEecCcc-----cceeeccccceeeeEEcCCCceEEEecC---CCcceEEEeCCccce-eeeeEecccCCCc
Confidence            345666666665442     1112121123667899999999999987   678888877654322 2222221  1112


Q ss_pred             eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee----ecCCCCCcCCeEECCCCCE-EEEEEecCCCcCCC
Q 004971          561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI----QSGSAGRANHPYFSPDGKS-IVFTSDYGGISAEP  635 (721)
Q Consensus       561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~----~~~~~~~~~~~~~SpDG~~-l~~~~~~~~~~~~~  635 (721)
                      ...+||.....+|+...++       .+-+||+..-..-..+    ...+.+.+....||+-|-. |+|.+..-      
T Consensus       207 F~~S~s~~~~~FAv~~Qdg-------~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhf------  273 (344)
T KOG4532|consen  207 FYNSFSENDLQFAVVFQDG-------TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHF------  273 (344)
T ss_pred             eeeeeccCcceEEEEecCC-------cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCc------
Confidence            4578998888888888775       7889998654322111    2226778888999987643 44444332      


Q ss_pred             CCCCCCCCCCccEEEEEcCCCCeE
Q 004971          636 ISTPHQYQPYGEIFKIKLDGSDLK  659 (721)
Q Consensus       636 ~~~~~~~~~~~~l~~~d~~~~~~~  659 (721)
                                +.+.++|+.+..-.
T Consensus       274 ----------s~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  274 ----------SRVHVVDTRNYVNH  287 (344)
T ss_pred             ----------ceEEEEEcccCcee
Confidence                      35889998776543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.69  E-value=0.14  Score=50.19  Aligned_cols=165  Identities=14%  Similarity=0.213  Sum_probs=93.7

Q ss_pred             cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCce
Q 004971          457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYK  535 (721)
Q Consensus       457 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~  535 (721)
                      ..+..++|.||.++|+.+.+        ....|+.++.++.    ..+++.-.+ +....+++.-+++ ++..+++  ..
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d--------~~~~i~els~~G~----vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er--~~   86 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQD--------EPGEIYELSLDGK----VLRRIPLDGFGDYEGITYLGNGR-YVLSEER--DQ   86 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEET--------TTTEEEEEETT------EEEEEE-SS-SSEEEEEE-STTE-EEEEETT--TT
T ss_pred             CCccccEEcCCCCeEEEEEC--------CCCEEEEEcCCCC----EEEEEeCCCCCCceeEEEECCCE-EEEEEcC--CC
Confidence            45789999999999998874        3456788888764    556665544 3455678876665 4555554  45


Q ss_pred             eEEEEECCC--Ccc--cceEECc-----CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec--CCCceEEeeec
Q 004971          536 NLYIMDAEG--GEG--YGLHRLT-----EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP--NGTGLRKLIQS  604 (721)
Q Consensus       536 ~l~~~d~~~--g~~--~~~~~l~-----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~--~~~~~~~l~~~  604 (721)
                      +|+++++..  ...  .....+.     .+......++|+|.++.|++...+     ....||.++.  ...........
T Consensus        87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~-----~P~~l~~~~~~~~~~~~~~~~~~  161 (248)
T PF06977_consen   87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER-----KPKRLYEVNGFPGGFDLFVSDDQ  161 (248)
T ss_dssp             EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES-----SSEEEEEEESTT-SS--EEEE-H
T ss_pred             cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC-----CChhhEEEccccCccceeecccc
Confidence            788777732  221  1112222     122335789999999999888765     3457888876  22222111110


Q ss_pred             ------CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971          605 ------GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       605 ------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  657 (721)
                            ..-.....+++.|....|+..+..+.                .|..+|.+|.-
T Consensus       162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~----------------~l~~~d~~G~~  204 (248)
T PF06977_consen  162 DLDDDKLFVRDLSGLSYDPRTGHLLILSDESR----------------LLLELDRQGRV  204 (248)
T ss_dssp             HHH-HT--SS---EEEEETTTTEEEEEETTTT----------------EEEEE-TT--E
T ss_pred             ccccccceeccccceEEcCCCCeEEEEECCCC----------------eEEEECCCCCE
Confidence                  01234567889998888888887764                38888976653

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=96.67  E-value=0.074  Score=53.08  Aligned_cols=194  Identities=11%  Similarity=0.048  Sum_probs=110.4

Q ss_pred             CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEecc--CCC-Ccceecc----cCCCCceeCcCCCEEEEE--e
Q 004971          367 SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK--SPL-PDISLFR----FDGSFPSFSPKGDRIAFV--E  437 (721)
Q Consensus       367 ~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~--~~~-~~~~~~~----~~~~~~~~SpDG~~la~~--~  437 (721)
                      +|.+-+..+.||.++++|+....+..       ..+|-.+-.  ... +.+....    .....++|.-.. +.+|.  .
T Consensus        54 ~H~GCiNAlqFS~N~~~L~SGGDD~~-------~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~  125 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDRFLASGGDDMH-------GRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSGER  125 (609)
T ss_pred             hhccccceeeeccCCeEEeecCCcce-------eeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-eeEecCCC
Confidence            34556777899999998886544333       233322210  111 2222211    122335665434 44444  3


Q ss_pred             CCcEEEEECCCCceEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCC
Q 004971          438 FPGVYVVNSDGSNRRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKN  512 (721)
Q Consensus       438 ~~~l~v~d~~~g~~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~  512 (721)
                      ..++..-|+.+.+...+.     .+.+..+..+|-...+++++       .++.+.+|++.....  ...+..+...+..
T Consensus       126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t-------~~~~V~~~D~Rd~~~--~~~~~~~AN~~~~  196 (609)
T KOG4227|consen  126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT-------RAKLVSFIDNRDRQN--PISLVLPANSGKN  196 (609)
T ss_pred             cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEe-------cCceEEEEeccCCCC--CCceeeecCCCcc
Confidence            677888899888766655     34678889999988888886       567888888765431  1233334444455


Q ss_pred             CcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce-----EECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971          513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL-----HRLTEGPWSDTMCNWSPDGEWIAFASDRD  579 (721)
Q Consensus       513 ~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~-----~~l~~~~~~~~~~~~SpDG~~l~~~~~~~  579 (721)
                      .....|.|..-.|+.+.+..+...  +||.........     .-|......-....|+|.|.++.......
T Consensus       197 F~t~~F~P~~P~Li~~~~~~~G~~--~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~  266 (609)
T KOG4227|consen  197 FYTAEFHPETPALILVNSETGGPN--VFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGK  266 (609)
T ss_pred             ceeeeecCCCceeEEeccccCCCC--ceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccC
Confidence            666789998877777665543333  445442221000     11111111124578999999987766543

>PRK13614 lipoprotein LpqB; Provisional

Probab=96.65  E-value=0.15  Score=56.15  Aligned_cols=163  Identities=15%  Similarity=0.138  Sum_probs=97.9

Q ss_pred             CCCceeCcCCCEEEEEeC--CcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971          421 GSFPSFSPKGDRIAFVEF--PGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV  497 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~~~--~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~  497 (721)
                      ...++.|+||+.+++...  ..+++... ++..+.+. ......+.|+++| ++..+.+       .....|..+...+.
T Consensus       345 ~~s~avS~~g~~~A~~~~~~~~l~~~~~-g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~-------g~~~~vv~~~~~g~  415 (573)
T PRK13614        345 PASPAESPVSQTVAFLNGSRTTLYTVSP-GQPARALTSGSTLTRPSFSPQD-WVWTAGP-------GGNGRIVAYRPTGV  415 (573)
T ss_pred             ccceeecCCCceEEEecCCCcEEEEecC-CCcceeeecCCCccCCcccCCC-CEEEeeC-------CCCceEEEEecCCC
Confidence            446799999999999853  25665554 34444444 4567899999998 6665542       22224444544332


Q ss_pred             CCcc--c--eEEcccCCC-CCcceEEccCCCEEEEEEeeCCceeEEEEEC---CCCcccceEECcCC-----CcCceeeE
Q 004971          498 DGVS--A--VRRLTTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA---EGGEGYGLHRLTEG-----PWSDTMCN  564 (721)
Q Consensus       498 ~~~~--~--~~~l~~~~~-~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~---~~g~~~~~~~l~~~-----~~~~~~~~  564 (721)
                      ....  .  .....-..+ .+..+..|+||-++++....++..+|++--+   ..|+   +..|+..     ......+.
T Consensus       416 ~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~---P~~L~~~~~~~~~~~~~sl~  492 (573)
T PRK13614        416 AEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGT---PRELTAPITLAADSDADTGA  492 (573)
T ss_pred             cccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCC---eEEccCceecccCCCcceeE
Confidence            0000  0  111111122 4788999999999999987766666776332   3444   3333321     23557899


Q ss_pred             EccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971          565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR  599 (721)
Q Consensus       565 ~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~  599 (721)
                      |..+++.++......    ....++++.+..+...
T Consensus       493 W~~~~sl~V~~~~~~----~~~~~~~v~v~~g~~~  523 (573)
T PRK13614        493 WVGDSTVVVTKASAT----SNVVPELLSVDAGQPQ  523 (573)
T ss_pred             EcCCCEEEEEeccCC----CcceEEEEEeCCCCcc
Confidence            998887555554332    4557888888666544

>PRK13613 lipoprotein LpqB; Provisional

Probab=96.63  E-value=0.27  Score=54.72  Aligned_cols=189  Identities=13%  Similarity=0.072  Sum_probs=106.3

Q ss_pred             CCCceeCcCCCEEEEEe--CCcEEEEECCCCce-----EE-EeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971          421 GSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNR-----RQ-VYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI  492 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~-----~~-l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~  492 (721)
                      ...++.|+||+.+|+..  ...+++-.+.++..     +. +.......+.|.++| .+..+ ++    ...+...++.+
T Consensus       365 ~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtv-d~----~~~~~~vl~v~  438 (599)
T PRK13613        365 LRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVV-DR----DPADPRLLWLL  438 (599)
T ss_pred             ccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEe-cC----CCCCceEEEEE
Confidence            34679999999999985  34567666543332     22 334567889999998 55554 21    01122123333


Q ss_pred             EccCCCCccceEEccc--CC-CCCcceEEccCCCEEEEEEeeCCceeEEEEEC---CCCc--ccceEECcCCCcCceeeE
Q 004971          493 NVDDVDGVSAVRRLTT--NG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA---EGGE--GYGLHRLTEGPWSDTMCN  564 (721)
Q Consensus       493 ~~~~~~~~~~~~~l~~--~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~---~~g~--~~~~~~l~~~~~~~~~~~  564 (721)
                      ...+     ....+..  .. ..+..+..|+||.++++.....+..+|++--+   ..|.  ...+..+......+..++
T Consensus       439 ~~~G-----~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~  513 (599)
T PRK13613        439 QGDG-----EPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMS  513 (599)
T ss_pred             cCCC-----cEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeE
Confidence            3222     2222222  11 26788999999999999987666667765432   2232  111233333334467899


Q ss_pred             EccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEE
Q 004971          565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT  625 (721)
Q Consensus       565 ~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~  625 (721)
                      |..+++.++.+....    +...+++.++++......... .-.....++-+.+-+.+++.
T Consensus       514 W~~~~sL~Vlg~~~~----~~~~v~~v~vdG~~~~~~~~~-~v~~~~~ia~~~~~~~~~v~  569 (599)
T PRK13613        514 WAGDSQLVVLGREEG----GVQQARYVQVDGSTPPASAPA-AVTGVESITASEDERLPLVA  569 (599)
T ss_pred             EcCCCEEEEEeccCC----CCcceEEEecCCcCccccccc-CCCCeeEEEecCCCCceEEE
Confidence            998887555454332    345799999987654322111 12233445555554434444

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.58  E-value=0.81  Score=44.50  Aligned_cols=63  Identities=13%  Similarity=0.203  Sum_probs=43.2

Q ss_pred             ceeCcCCCEEEEEeCCcEEEEECCCCce-----EEEe-e--cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEE
Q 004971          424 PSFSPKGDRIAFVEFPGVYVVNSDGSNR-----RQVY-F--KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN  493 (721)
Q Consensus       424 ~~~SpDG~~la~~~~~~l~v~d~~~g~~-----~~l~-~--~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~  493 (721)
                      ++.+.||+.||.+.+..|.+-.....=.     .++. +  ..-+.++||||+..||++.       ..+.++++++-
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~-------S~G~i~vfdl~   73 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAE-------STGTIRVFDLM   73 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEc-------CCCeEEEEecc
Confidence            5778999999999777777665543211     1222 1  2235789999999999985       46777777554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.56  E-value=0.088  Score=55.06  Aligned_cols=238  Identities=12%  Similarity=0.087  Sum_probs=126.3

Q ss_pred             ceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCC-CCEEEEEEe
Q 004971          311 SIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD-SSRVGYHKC  389 (721)
Q Consensus       311 ~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd-g~~l~~~~~  389 (721)
                      ....++++..-+..+.|+. ||.+|+.     |+++.++.+||.-..+..... ..+|...+....|-|. +.+|+. +.
T Consensus        42 lE~eL~GH~GCVN~LeWn~-dG~lL~S-----GSDD~r~ivWd~~~~KllhsI-~TgHtaNIFsvKFvP~tnnriv~-sg  113 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNA-DGELLAS-----GSDDTRLIVWDPFEYKLLHSI-STGHTANIFSVKFVPYTNNRIVL-SG  113 (758)
T ss_pred             hhhhhccccceecceeecC-CCCEEee-----cCCcceEEeecchhcceeeee-ecccccceeEEeeeccCCCeEEE-ec
Confidence            4455677777788899999 9999887     668888999999765533322 2556777888888886 445555 33


Q ss_pred             eCCCCCCCCcceeEEEeccCC---------CCcceecc---cCCCCceeCcCCCEEEEE--eCCcEEEEECCCCce----
Q 004971          390 RGGSTREDGNNQLLLENIKSP---------LPDISLFR---FDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNR----  451 (721)
Q Consensus       390 ~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~---~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~----  451 (721)
                      .++       ..+.+.++...         ........   ..+..++..|++-..+..  .++.|..+|+.....    
T Consensus       114 AgD-------k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~  186 (758)
T KOG1310|consen  114 AGD-------KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD  186 (758)
T ss_pred             cCc-------ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc
Confidence            343       34666666531         11111111   112335666777444333  477888888754211    


Q ss_pred             ----EEEe---e--cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCC
Q 004971          452 ----RQVY---F--KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG  522 (721)
Q Consensus       452 ----~~l~---~--~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg  522 (721)
                          ..+.   .  -....+..||.....+.+.      ..+.-.++|+...       ..+.+.........+ --+++
T Consensus       187 ~~~~~~l~ny~~~lielk~ltisp~rp~~laVG------gsdpfarLYD~Rr-------~lks~~s~~~~~~~p-p~~~~  252 (758)
T KOG1310|consen  187 EDCPSILVNYNPQLIELKCLTISPSRPYYLAVG------GSDPFARLYDRRR-------VLKSFRSDGTMNTCP-PKDCR  252 (758)
T ss_pred             ccccHHHHHhchhhheeeeeeecCCCCceEEec------CCCchhhhhhhhh-------hccCCCCCccccCCC-Ccccc
Confidence                1111   1  1234677888766555443      2345566666321       111111111111111 00111


Q ss_pred             CEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971          523 KWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL  598 (721)
Q Consensus       523 ~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~  598 (721)
                      - +.+-+    ..+|  -+. .|.      +..-....+.++|+|+|..|++.-..+       +||++|+..++.
T Consensus       253 c-v~yf~----p~hl--kn~-~gn------~~~~~~~~t~vtfnpNGtElLvs~~gE-------hVYlfdvn~~~~  307 (758)
T KOG1310|consen  253 C-VRYFS----PGHL--KNS-QGN------LDRYITCCTYVTFNPNGTELLVSWGGE-------HVYLFDVNEDKS  307 (758)
T ss_pred             h-hheec----Cccc--cCc-ccc------cccceeeeEEEEECCCCcEEEEeeCCe-------EEEEEeecCCCC
Confidence            1 11111    1112  011 111      111111236789999999998887664       899999977653

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=96.49  E-value=0.54  Score=51.67  Aligned_cols=94  Identities=9%  Similarity=0.063  Sum_probs=63.4

Q ss_pred             ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCC--CCCceeEEEEecCCCceEEee--ecCCCCC
Q 004971          534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP--GSGSFEMYLIHPNGTGLRKLI--QSGSAGR  609 (721)
Q Consensus       534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~--~~~~~~i~~~d~~~~~~~~l~--~~~~~~~  609 (721)
                      .+.|-++|+.++..  -+.+.-+...+..+.|--..+.+-|+....+.  ..-.+++.+-|+.+|..+..-  +......
T Consensus       446 sGTV~vvdvst~~v--~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~desp  523 (1062)
T KOG1912|consen  446 SGTVDVVDVSTNAV--AASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESP  523 (1062)
T ss_pred             CceEEEEEecchhh--hhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCc
Confidence            56788888888764  33444556667788888777766666554321  123468899999998655443  2223456


Q ss_pred             cCCeEECCCCCEEEEEEecC
Q 004971          610 ANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       610 ~~~~~~SpDG~~l~~~~~~~  629 (721)
                      +..+..|.-|+||+..-.+.
T Consensus       524 I~~irvS~~~~yLai~Fr~~  543 (1062)
T KOG1912|consen  524 IRAIRVSSSGRYLAILFRRE  543 (1062)
T ss_pred             ceeeeecccCceEEEEeccc
Confidence            77788999999998887765

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=96.47  E-value=1.9  Score=47.67  Aligned_cols=71  Identities=6%  Similarity=-0.025  Sum_probs=46.6

Q ss_pred             eEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCC
Q 004971          587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSF  666 (721)
Q Consensus       587 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~  666 (721)
                      .|-++|+.++...+-+.. |...+..+.|.-..+.+-|..+..... .       --..++|.+.|+.+|..+.+-.-..
T Consensus       448 TV~vvdvst~~v~~~fsv-ht~~VkgleW~g~sslvSfsys~~n~~-s-------g~vrN~l~vtdLrtGlsk~fR~l~~  518 (1062)
T KOG1912|consen  448 TVDVVDVSTNAVAASFSV-HTSLVKGLEWLGNSSLVSFSYSHVNSA-S-------GGVRNDLVVTDLRTGLSKRFRGLQK  518 (1062)
T ss_pred             eEEEEEecchhhhhhhcc-cccceeeeeeccceeEEEeeecccccc-c-------cceeeeEEEEEcccccccccccCCC
Confidence            788889888766554443 677888899987777666654433220 0       0112469999999998777764333

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=96.45  E-value=0.019  Score=62.84  Aligned_cols=250  Identities=14%  Similarity=0.117  Sum_probs=128.7

Q ss_pred             CCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCC
Q 004971          289 DDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSP  368 (721)
Q Consensus       289 ~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~  368 (721)
                      +..+.||.+....         ...-+.++...+...+++. +.-.++.++     .+.-|++|-+.++.  .+..+.+|
T Consensus       211 d~lvKiwS~et~~---------~lAs~rGhs~ditdlavs~-~n~~iaaaS-----~D~vIrvWrl~~~~--pvsvLrgh  273 (1113)
T KOG0644|consen  211 DRLVKIWSMETAR---------CLASCRGHSGDITDLAVSS-NNTMIAAAS-----NDKVIRVWRLPDGA--PVSVLRGH  273 (1113)
T ss_pred             cceeeeeeccchh---------hhccCCCCccccchhccch-hhhhhhhcc-----cCceEEEEecCCCc--hHHHHhcc
Confidence            5677888543322         3444456666778888877 666666543     45569999999998  44445677


Q ss_pred             CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE----eCCcEEEE
Q 004971          369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV----EFPGVYVV  444 (721)
Q Consensus       369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~----~~~~l~v~  444 (721)
                      .+.+..++|||--    ..+.++.       ..+|-+++..-   +    ...+-+.  ++++.++..    ....-+.-
T Consensus       274 tgavtaiafsP~~----sss~dgt-------~~~wd~r~~~~---~----y~prp~~--~~~~~~~~s~~~~~~~~~f~T  333 (1113)
T KOG0644|consen  274 TGAVTAIAFSPRA----SSSDDGT-------CRIWDARLEPR---I----YVPRPLK--FTEKDLVDSILFENNGDRFLT  333 (1113)
T ss_pred             ccceeeeccCccc----cCCCCCc-------eEecccccccc---c----cCCCCCC--cccccceeeeecccccccccc
Confidence            8888889998854    1122222       23333221100   0    0011111  122222111    00000000


Q ss_pred             ECCCCceEE-----Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceE
Q 004971          445 NSDGSNRRQ-----VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPS  517 (721)
Q Consensus       445 d~~~g~~~~-----l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~  517 (721)
                      .-.+++...     +.  .........+.|-..+.++.        .....+..+++-.+   .....+..+....+.+.
T Consensus       334 gs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~a--------r~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd  402 (1113)
T KOG0644|consen  334 GSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTA--------RNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLD  402 (1113)
T ss_pred             ccCCcccccchhhHhhhhccceEEEeccccccccceee--------eeeeEeeeeecccc---hhhhhhcccccceeeee
Confidence            001111000     00  00111111222222222221        22333333333322   23455556666677788


Q ss_pred             EccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971          518 VSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG  597 (721)
Q Consensus       518 ~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~  597 (721)
                      ++|=+.+++.....  +....+||+-.|.+  ++....+.+....-.||+||+.+++....+       ++|+....-++
T Consensus       403 ~Hpfn~ri~msag~--dgst~iwdi~eg~p--ik~y~~gh~kl~d~kFSqdgts~~lsd~hg-------ql~i~g~gqs~  471 (1113)
T KOG0644|consen  403 VHPFNPRIAMSAGY--DGSTIIWDIWEGIP--IKHYFIGHGKLVDGKFSQDGTSIALSDDHG-------QLYILGTGQSK  471 (1113)
T ss_pred             ecCCCcHhhhhccC--CCceEeeecccCCc--ceeeecccceeeccccCCCCceEecCCCCC-------ceEEeccCCCc
Confidence            89988888877655  55788999988875  333333445556779999999998877664       78887654443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=96.42  E-value=0.074  Score=53.61  Aligned_cols=153  Identities=11%  Similarity=0.031  Sum_probs=88.4

Q ss_pred             CceeCcCCCEEEEEe-CCcEEEEECCCCc--eEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971          423 FPSFSPKGDRIAFVE-FPGVYVVNSDGSN--RRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD  495 (721)
Q Consensus       423 ~~~~SpDG~~la~~~-~~~l~v~d~~~g~--~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~  495 (721)
                      ....+++|+.||... ....++++.....  .+.+.    ......+.+-.+...+.++-..    .+...+.++..+. 
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dka----gD~~~~di~s~~~-  141 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKA----GDVYSFDILSADS-  141 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeec----CCceeeeeecccc-
Confidence            345677787777773 5555566554433  22222    3344556666666665554310    1222333333332 


Q ss_pred             CCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEE
Q 004971          496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAF  574 (721)
Q Consensus       496 ~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~  574 (721)
                       .    ..+.+..+-.....++||||+++|++...   +.+|++.....-..  +..+. .+...+..++.-++ ..|+.
T Consensus       142 -~----~~~~~lGhvSml~dVavS~D~~~IitaDR---DEkIRvs~ypa~f~--IesfclGH~eFVS~isl~~~-~~LlS  210 (390)
T KOG3914|consen  142 -G----RCEPILGHVSMLLDVAVSPDDQFIITADR---DEKIRVSRYPATFV--IESFCLGHKEFVSTISLTDN-YLLLS  210 (390)
T ss_pred             -c----CcchhhhhhhhhheeeecCCCCEEEEecC---CceEEEEecCcccc--hhhhccccHhheeeeeeccC-ceeee
Confidence             1    44455555567888999999998887765   56777765543221  22222 35556677777754 44565


Q ss_pred             EEccCCCCCCceeEEEEecCCCce
Q 004971          575 ASDRDNPGSGSFEMYLIHPNGTGL  598 (721)
Q Consensus       575 ~~~~~~~~~~~~~i~~~d~~~~~~  598 (721)
                      ++.+.       +|++||..+|+.
T Consensus       211 ~sGD~-------tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  211 GSGDK-------TLRLWDITSGKL  227 (390)
T ss_pred             cCCCC-------cEEEEecccCCc
Confidence            55553       999999988864

>PRK13615 lipoprotein LpqB; Provisional

Probab=96.41  E-value=0.33  Score=53.26  Aligned_cols=159  Identities=15%  Similarity=0.135  Sum_probs=97.3

Q ss_pred             CCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971          422 SFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG  499 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~  499 (721)
                      ..++.|+||+.+++.. ...+++.... +..+.+. ......+.|+++| ++..+.+       .....+......+   
T Consensus       337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~~~~Lt~PS~d~~g-~vWtv~~-------g~~~~l~~~~~~G---  404 (557)
T PRK13615        337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDTRPGLVAPSLDAQG-YVWSTPA-------SDPRGLVAWGPDG---  404 (557)
T ss_pred             ccceEcCCCceEEEEcCCceEEEecCC-CcceeeccCCccccCcCcCCC-CEEEEeC-------CCceEEEEecCCC---
Confidence            4679999999999985 4456555444 3444444 3357899999998 6666542       2234444443332   


Q ss_pred             ccceEEccc---CCCCCcceEEccCCCEEEEEEeeCCceeEEEEE--CCCCcccce----EECcCCCcCceeeEEccCCC
Q 004971          500 VSAVRRLTT---NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD--AEGGEGYGL----HRLTEGPWSDTMCNWSPDGE  570 (721)
Q Consensus       500 ~~~~~~l~~---~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d--~~~g~~~~~----~~l~~~~~~~~~~~~SpDG~  570 (721)
                        ....+..   .+..+..+..|+||-++++..+..+..+|++--  -.++.+..+    ..+.........+.|..+++
T Consensus       405 --~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~  482 (557)
T PRK13615        405 --VGHPVAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELD  482 (557)
T ss_pred             --ceEEeeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCE
Confidence              2222211   124678899999999999998766666777632  233421112    23332333567899999888


Q ss_pred             EEEEEEccCCCCCCceeEEEEecCCCce
Q 004971          571 WIAFASDRDNPGSGSFEMYLIHPNGTGL  598 (721)
Q Consensus       571 ~l~~~~~~~~~~~~~~~i~~~d~~~~~~  598 (721)
                      .++......    ....+++..+.+...
T Consensus       483 laVl~~~~~----~~~~v~~v~v~g~~~  506 (557)
T PRK13615        483 VATLTLAPD----GERQVELHQVGGPSK  506 (557)
T ss_pred             EEEEeccCC----CCceEEEEECCCccc
Confidence            555553332    445789999886543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=96.28  E-value=0.06  Score=60.62  Aligned_cols=100  Identities=19%  Similarity=0.142  Sum_probs=76.6

Q ss_pred             EEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971          517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                      .++++.-++++.+-   ..+|++|++...+.  ...+..+.+.+..+.||-||++|+..+.+.       .+.+|+++++
T Consensus       140 g~s~~~~~i~~gsv---~~~iivW~~~~dn~--p~~l~GHeG~iF~i~~s~dg~~i~s~SdDR-------siRlW~i~s~  207 (967)
T KOG0974|consen  140 GDSAEELYIASGSV---FGEIIVWKPHEDNK--PIRLKGHEGSIFSIVTSLDGRYIASVSDDR-------SIRLWPIDSR  207 (967)
T ss_pred             eccCcEEEEEeccc---cccEEEEeccccCC--cceecccCCceEEEEEccCCcEEEEEecCc-------ceeeeecccc
Confidence            45666667776665   67899998874332  446778888889999999999999999885       8999999998


Q ss_pred             ceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       597 ~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      +....+--+|...+....|.|.  +|+..+.+-.
T Consensus       208 ~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct  239 (967)
T KOG0974|consen  208 EVLGCTGFGHSARVWACCFLPN--RIITVGEDCT  239 (967)
T ss_pred             cccCcccccccceeEEEEeccc--eeEEeccceE
Confidence            7655333347788888999988  7777776654

>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=2.6  Score=48.85  Aligned_cols=111  Identities=22%  Similarity=0.313  Sum_probs=72.3

Q ss_pred             eEEccCCC-EEEEEEeeCC-ceeEEEEECCCCcccceEECcCCCcCce-eeEEccCCCEEEEEEccCCCCCCceeEEEEe
Q 004971          516 PSVSPDGK-WIVFRSTRTG-YKNLYIMDAEGGEGYGLHRLTEGPWSDT-MCNWSPDGEWIAFASDRDNPGSGSFEMYLIH  592 (721)
Q Consensus       516 ~~~SpDg~-~l~~~s~~~g-~~~l~~~d~~~g~~~~~~~l~~~~~~~~-~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d  592 (721)
                      +.++.|+. .+++.....+ ..++..+....+..  +..++.+.+.+. -+.++.|.+.++|......  .+.+++|..+
T Consensus       345 ~~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~~~--~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~--~~~~~ly~i~  420 (755)
T KOG2100|consen  345 PVFSSDGSSYLKVDSVSDGGYNHIAYLKLSNGSE--PRMLTSGNWEVTSILGYDKDSNRIYFDAYEED--PSERHLYSIS  420 (755)
T ss_pred             ceEeecCCceeEEEeeccCCEEEEEEEEcCCCCc--cccccccceEEEEeccccCCCceEEEEecCCC--CCceEEEEEE
Confidence            56788874 4444444444 56777777666632  667777766543 3566788999999887642  3678999999


Q ss_pred             cCCCceEEeeecCC--CCCcCCeEECCCCCEEEEEEecCC
Q 004971          593 PNGTGLRKLIQSGS--AGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       593 ~~~~~~~~l~~~~~--~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      +.+....+++....  .....++.+++..++++.......
T Consensus       421 ~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~  460 (755)
T KOG2100|consen  421 LGSGTVESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPK  460 (755)
T ss_pred             ccccccccccccCCCCcceEEEEecCCcccEEEEEccCCC
Confidence            98877666653211  123346778888888777665544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.21  E-value=0.96  Score=44.26  Aligned_cols=137  Identities=13%  Similarity=0.104  Sum_probs=73.9

Q ss_pred             CCcEEEEECCCCceEEEe--ecCceeeE--EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCC
Q 004971          438 FPGVYVVNSDGSNRRQVY--FKNAFSTV--WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN  513 (721)
Q Consensus       438 ~~~l~v~d~~~g~~~~l~--~~~~~~~~--~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~  513 (721)
                      ++.|..+|+.+|+...-.  ......+.  ..+++.++++..         ....|+.++...+   ...-+... ....
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~~l~~~d~~tG---~~~W~~~~-~~~~   68 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS---------GDGNLYALDAKTG---KVLWRFDL-PGPI   68 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE---------TTSEEEEEETTTS---EEEEEEEC-SSCG
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc---------CCCEEEEEECCCC---CEEEEeec-cccc
Confidence            345777777666643322  11123333  444677777764         3345666665432   12222222 2122


Q ss_pred             cceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC----CcCceeeEEccCCCEEEEEEccCCCCCCceeEE
Q 004971          514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG----PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY  589 (721)
Q Consensus       514 ~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~----~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~  589 (721)
                      .... ..++..+++...   +..|+.+|..+|+.  +-.....    ......+....+++.+++.....       .|+
T Consensus        69 ~~~~-~~~~~~v~v~~~---~~~l~~~d~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~l~  135 (238)
T PF13360_consen   69 SGAP-VVDGGRVYVGTS---DGSLYALDAKTGKV--LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG-------KLV  135 (238)
T ss_dssp             GSGE-EEETTEEEEEET---TSEEEEEETTTSCE--EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS-------EEE
T ss_pred             ccee-eecccccccccc---eeeeEecccCCcce--eeeeccccccccccccccCceEecCEEEEEeccC-------cEE
Confidence            2222 345566776664   45899999999985  3332111    11122344445588888888654       899


Q ss_pred             EEecCCCceEE
Q 004971          590 LIHPNGTGLRK  600 (721)
Q Consensus       590 ~~d~~~~~~~~  600 (721)
                      .+|+.+|+..-
T Consensus       136 ~~d~~tG~~~w  146 (238)
T PF13360_consen  136 ALDPKTGKLLW  146 (238)
T ss_dssp             EEETTTTEEEE
T ss_pred             EEecCCCcEEE
Confidence            99999997643

...

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.21  E-value=0.28  Score=51.76  Aligned_cols=111  Identities=15%  Similarity=0.177  Sum_probs=63.1

Q ss_pred             EEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEE-ECCCC-----cccce-EECcCC----CcCceeeEEccCCCEE
Q 004971          504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM-DAEGG-----EGYGL-HRLTEG----PWSDTMCNWSPDGEWI  572 (721)
Q Consensus       504 ~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~-d~~~g-----~~~~~-~~l~~~----~~~~~~~~~SpDG~~l  572 (721)
                      +.+.........+++.++|  |+++.    ...|+++ |.++.     +.+.+ ..+...    ......+.|.|||+ |
T Consensus        65 ~vfa~~l~~p~Gi~~~~~G--lyV~~----~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-L  137 (367)
T TIGR02604        65 NVFAEELSMVTGLAVAVGG--VYVAT----PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-L  137 (367)
T ss_pred             EEeecCCCCccceeEecCC--EEEeC----CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-E
Confidence            3443333456778999998  55544    3568877 44321     21111 112221    22346799999996 6


Q ss_pred             EEEEccCCC-------------CCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEE
Q 004971          573 AFASDRDNP-------------GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV  623 (721)
Q Consensus       573 ~~~~~~~~~-------------~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~  623 (721)
                      +++......             ......|++++.++++.+.+..  .-.....++|+|+|+.++
T Consensus       138 Yv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~--G~rnp~Gl~~d~~G~l~~  199 (367)
T TIGR02604       138 YFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH--GFQNPYGHSVDSWGDVFF  199 (367)
T ss_pred             EEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec--CcCCCccceECCCCCEEE
Confidence            665442100             0012469999999887665532  233456899999998643

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.17  E-value=1.2  Score=42.05  Aligned_cols=143  Identities=14%  Similarity=0.110  Sum_probs=78.2

Q ss_pred             CceeCcCCCEEEEE----------eCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEE
Q 004971          423 FPSFSPKGDRIAFV----------EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDII  490 (721)
Q Consensus       423 ~~~~SpDG~~la~~----------~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~  490 (721)
                      ....+|+|++.+-.          -.+.||.|-+ +++...+.  -+....++|+.|.+.++|.-      ..+-.+.-|
T Consensus       113 DgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iD------sln~~V~a~  185 (310)
T KOG4499|consen  113 DGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA-GHQVELIWNCVGISNGLAWDSDAKKFYYID------SLNYEVDAY  185 (310)
T ss_pred             cCccCCCCceeeeeeccccccccccccEEEEecc-CCCceeeehhccCCccccccccCcEEEEEc------cCceEEeee
Confidence            35789999884332          1345666654 44444444  34556799999999999874      234455558


Q ss_pred             EEEccCCCCcc--ceEEcccCC----CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeE
Q 004971          491 SINVDDVDGVS--AVRRLTTNG----KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN  564 (721)
Q Consensus       491 ~~~~~~~~~~~--~~~~l~~~~----~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~  564 (721)
                      +++..++....  .+..|....    ......++.-+|+..+..-+   ...++.+|+.+|+.  +..+.-....++..+
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n---g~~V~~~dp~tGK~--L~eiklPt~qitscc  260 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN---GGTVQKVDPTTGKI--LLEIKLPTPQITSCC  260 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec---CcEEEEECCCCCcE--EEEEEcCCCceEEEE
Confidence            87776642111  111222211    12223444445554333333   56899999999986  443333333456677


Q ss_pred             Ec-cCCCEEEEEEc
Q 004971          565 WS-PDGEWIAFASD  577 (721)
Q Consensus       565 ~S-pDG~~l~~~~~  577 (721)
                      |- |+=..++++..
T Consensus       261 FgGkn~d~~yvT~a  274 (310)
T KOG4499|consen  261 FGGKNLDILYVTTA  274 (310)
T ss_pred             ecCCCccEEEEEeh
Confidence            74 32234454444

>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]

Probab=96.14  E-value=2  Score=46.55  Aligned_cols=57  Identities=12%  Similarity=0.017  Sum_probs=38.2

Q ss_pred             CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEE
Q 004971          324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGY  386 (721)
Q Consensus       324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~  386 (721)
                      ....+| +++++++.-+..|++...++.+|++++..  +..   +......+.|-.++..++.
T Consensus       114 Gas~~~-~~~R~l~s~S~gG~D~~~~re~Dlet~~f--v~~---~~f~~~~~~wld~d~~~~~  170 (648)
T COG1505         114 GASVLP-DGTRLLYSLSIGGSDAGITREFDLETGEF--VEE---EGFKFPGISWLDDDGVFVS  170 (648)
T ss_pred             cceeCC-CCCEEEEEecCCCCcceEEEEEEeccccc--ccC---CCccccceEEecCCCEEEe
Confidence            334458 99999998888888888899999999863  221   0111222778777755544

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.07  E-value=1.8  Score=43.18  Aligned_cols=67  Identities=15%  Similarity=0.119  Sum_probs=43.7

Q ss_pred             CCCceeCcCCCEEEEEeCCcEEEEECC--CCceEEEe--------------ec---CceeeEEcCCCCeEEEEecCCCCC
Q 004971          421 GSFPSFSPKGDRIAFVEFPGVYVVNSD--GSNRRQVY--------------FK---NAFSTVWDPVREAVVYTSGGPEFA  481 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~~~~~l~v~d~~--~g~~~~l~--------------~~---~~~~~~~spdg~~la~~~~~~~~~  481 (721)
                      ...+.||++|++|+.-.--.|.+||+.  .+......              ..   .-+...||-++..++..+      
T Consensus       275 ISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGs------  348 (433)
T KOG1354|consen  275 ISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGS------  348 (433)
T ss_pred             hhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccc------
Confidence            345799999999888777889999984  33222222              11   234688999998888765      


Q ss_pred             CCCCcEEEEEEEc
Q 004971          482 SESSEVDIISINV  494 (721)
Q Consensus       482 ~~~~~~~i~~~~~  494 (721)
                       -....+++..+.
T Consensus       349 -y~n~frvf~~~~  360 (433)
T KOG1354|consen  349 -YNNVFRVFNLAR  360 (433)
T ss_pred             -ccceEEEecCCC
Confidence             234555665443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.95  E-value=1.5  Score=41.36  Aligned_cols=157  Identities=11%  Similarity=-0.014  Sum_probs=84.3

Q ss_pred             CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeE
Q 004971          458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL  537 (721)
Q Consensus       458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l  537 (721)
                      ...+...+|+|++.+=+..........-...+|..-.+.     ++..+-..-.....++|+-|.|.++|....  +..+
T Consensus       110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-----~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsl--n~~V  182 (310)
T KOG4499|consen  110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-----QVELIWNCVGISNGLAWDSDAKKFYYIDSL--NYEV  182 (310)
T ss_pred             ccccCccCCCCceeeeeeccccccccccccEEEEeccCC-----CceeeehhccCCccccccccCcEEEEEccC--ceEE
Confidence            345667899999944333211111122223344443332     444444443456678999999999998654  4456


Q ss_pred             --EEEECCCCcccc---eEECcCC----CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCC
Q 004971          538 --YIMDAEGGEGYG---LHRLTEG----PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG  608 (721)
Q Consensus       538 --~~~d~~~g~~~~---~~~l~~~----~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~  608 (721)
                        |-+|..+|....   +-.+...    ......++...+|...+.+-+.       ..|+++|+.+|+..+-... ...
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng-------~~V~~~dp~tGK~L~eikl-Pt~  254 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG-------GTVQKVDPTTGKILLEIKL-PTP  254 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC-------cEEEEECCCCCcEEEEEEc-CCC
Confidence              666688876422   2222221    1112234555566533333333       3899999999986544433 344


Q ss_pred             CcCCeEEC-CCCCEEEEEEecC
Q 004971          609 RANHPYFS-PDGKSIVFTSDYG  629 (721)
Q Consensus       609 ~~~~~~~S-pDG~~l~~~~~~~  629 (721)
                      .+.+.+|- |+=..++++....
T Consensus       255 qitsccFgGkn~d~~yvT~aa~  276 (310)
T KOG4499|consen  255 QITSCCFGGKNLDILYVTTAAK  276 (310)
T ss_pred             ceEEEEecCCCccEEEEEehhc
Confidence            56777774 2223455555443

>PRK13613 lipoprotein LpqB; Provisional

Probab=95.81  E-value=2.9  Score=46.74  Aligned_cols=162  Identities=14%  Similarity=0.114  Sum_probs=94.1

Q ss_pred             cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC----c-ceecccCCCCceeCcCCCEEEEEeC----Cc-
Q 004971          371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP----D-ISLFRFDGSFPSFSPKGDRIAFVEF----PG-  440 (721)
Q Consensus       371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~-~~~~~~~~~~~~~SpDG~~la~~~~----~~-  440 (721)
                      ....++.|+++..+++...++        ..+++-.+..+..    . .......-..|.|.++| ++-.+..    .. 
T Consensus       364 ~~~s~avS~~g~~~A~v~~~~--------~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~v  434 (599)
T PRK13613        364 PLRRVAVSRDESRAAGISADG--------DSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRL  434 (599)
T ss_pred             CccceEEcCCCceEEEEcCCC--------cEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceE
Confidence            456789999999999875322        3466654432211    0 01111223457888888 5544421    22 


Q ss_pred             EEEEECCCCceEEEe----ec-CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC--ccceEEcccCCCCC
Q 004971          441 VYVVNSDGSNRRQVY----FK-NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG--VSAVRRLTTNGKNN  513 (721)
Q Consensus       441 l~v~d~~~g~~~~l~----~~-~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~l~~~~~~~  513 (721)
                      +.+..- +|+...+.    .+ .+..+..|+||.++++....    ...+++.|-.+..+....  -.....+.......
T Consensus       435 l~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~----~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v  509 (599)
T PRK13613        435 LWLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEK----DGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDV  509 (599)
T ss_pred             EEEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEec----CCCcEEEEEEEEeCCCCcEEeeccEEeccCCCcc
Confidence            444443 55544444    23 68899999999999998742    123556666665544311  01112222222346


Q ss_pred             cceEEccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971          514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE  546 (721)
Q Consensus       514 ~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~  546 (721)
                      ..++|..++..++......+...++++++++..
T Consensus       510 ~~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~  542 (599)
T PRK13613        510 TDMSWAGDSQLVVLGREEGGVQQARYVQVDGST  542 (599)
T ss_pred             ceeEEcCCCEEEEEeccCCCCcceEEEecCCcC
Confidence            778999988855545444446789999998655

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.65  E-value=2  Score=45.99  Aligned_cols=45  Identities=16%  Similarity=0.224  Sum_probs=33.2

Q ss_pred             cEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971          440 GVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI  492 (721)
Q Consensus       440 ~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~  492 (721)
                      .|.+++..|.....+.  .+.+..+.|+.+.+.+++.        .++.+.+|++
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~--------~dG~v~vy~~  108 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQ--------SDGTVRVYDL  108 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEE--------cCCEEEEEeC
Confidence            4888888887766665  5678899999876666554        4677888765

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]

Probab=95.53  E-value=3.2  Score=48.03  Aligned_cols=89  Identities=16%  Similarity=0.140  Sum_probs=51.6

Q ss_pred             eEEccCCCEEEEEEccCCCCCCceeEEEEecCCC-ceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCC
Q 004971          563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT-GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQ  641 (721)
Q Consensus       563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~-~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~  641 (721)
                      +.++.|+....+......  .+..++..+....+ .++.++.. .-.....+.++.+.+.++|.+......         
T Consensus       345 ~~~~~d~~~~~~~~~~~~--~~~~hi~~~~~~~~~~~~~lt~g-~w~v~~i~~~~~~~~~i~f~~~~~~~~---------  412 (755)
T KOG2100|consen  345 PVFSSDGSSYLKVDSVSD--GGYNHIAYLKLSNGSEPRMLTSG-NWEVTSILGYDKDSNRIYFDAYEEDPS---------  412 (755)
T ss_pred             ceEeecCCceeEEEeecc--CCEEEEEEEEcCCCCcccccccc-ceEEEEeccccCCCceEEEEecCCCCC---------
Confidence            567778744433333221  11456666655555 44444431 111123345667889999888765221         


Q ss_pred             CCCCccEEEEEcCCCCeEEeccCCC
Q 004971          642 YQPYGEIFKIKLDGSDLKRLTQNSF  666 (721)
Q Consensus       642 ~~~~~~l~~~d~~~~~~~~lt~~~~  666 (721)
                         .++||.+++.+....++|....
T Consensus       413 ---~~~ly~i~~~~~~~~~lt~~~~  434 (755)
T KOG2100|consen  413 ---ERHLYSISLGSGTVESLTCSLI  434 (755)
T ss_pred             ---ceEEEEEEccccccccccccCC
Confidence               3479999999888777887554

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.46  E-value=0.59  Score=50.91  Aligned_cols=100  Identities=16%  Similarity=0.221  Sum_probs=59.8

Q ss_pred             cCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCC--CCccccccCCCCCEEEEEecCCCCCCcccceeeeeEE
Q 004971          175 SGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYG--VADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIY  252 (721)
Q Consensus       175 dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~--~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~  252 (721)
                      .++++++.+..+          .||..+-.++..+.++...  .......+|++..++|+....+-          -.|+
T Consensus        44 t~~~l~~GsS~G----------~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~----------V~v~  103 (726)
T KOG3621|consen   44 TEEYLAMGSSAG----------SVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR----------VSVF  103 (726)
T ss_pred             CCceEEEecccc----------eEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce----------EEee
Confidence            388888877664          8999988888888775532  22344467888888887654332          3444


Q ss_pred             EEEcCCCceeEEEeccC-----C---cceeccCCeEEEEeccCCCCcEEEEEE
Q 004971          253 IFLTRDGTQRVKIVENG-----G---WPCWVDESTLFFHRKSEEDDWISVYKV  297 (721)
Q Consensus       253 ~~d~~~g~~~~l~~~~~-----~---~~~ws~dg~l~~~~~~~~~g~~~l~~~  297 (721)
                      .++. .+...+....+.     .   ...|++|+.-+|  ..+..|.+.+-.+
T Consensus       104 ql~~-~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~y--sGD~~Gkv~~~~L  153 (726)
T KOG3621|consen  104 QLNK-ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLY--SGDSQGKVVLTEL  153 (726)
T ss_pred             hhhc-cCCCcceeeccccccCCceEEEEEecccccEEe--ecCCCceEEEEEe
Confidence            4443 333333332221     1   348999987555  3554666644433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=95.45  E-value=0.052  Score=56.67  Aligned_cols=117  Identities=14%  Similarity=0.122  Sum_probs=78.4

Q ss_pred             ceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccC-CCEEEEEEccC
Q 004971          502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPD-GEWIAFASDRD  579 (721)
Q Consensus       502 ~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpD-G~~l~~~~~~~  579 (721)
                      ....|+.+.+-+..+.|+.||.+|+..++   +.+|.+||.-..+.  +..+. .+...+....|-|- +..|+.+... 
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSD---D~r~ivWd~~~~Kl--lhsI~TgHtaNIFsvKFvP~tnnriv~sgAg-  115 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSD---DTRLIVWDPFEYKL--LHSISTGHTANIFSVKFVPYTNNRIVLSGAG-  115 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCC---cceEEeecchhcce--eeeeecccccceeEEeeeccCCCeEEEeccC-
Confidence            34567788889999999999999999887   88999999985553  44443 45566777888774 4455544432 


Q ss_pred             CCCCCceeEEEEecCCCce----------EEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          580 NPGSGSFEMYLIHPNGTGL----------RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       580 ~~~~~~~~i~~~d~~~~~~----------~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                           ...|+++|++..+.          ..+... +...+..++--|++-..++....++
T Consensus       116 -----Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~c-ht~rVKria~~p~~PhtfwsasEDG  170 (758)
T KOG1310|consen  116 -----DKLIKLFDLDSSKEGGMDHGMEETTRCWSC-HTDRVKRIATAPNGPHTFWSASEDG  170 (758)
T ss_pred             -----cceEEEEecccccccccccCccchhhhhhh-hhhhhhheecCCCCCceEEEecCCc
Confidence                 24899999875221          112222 3445667788888866666655544

>PRK13614 lipoprotein LpqB; Provisional

Probab=95.45  E-value=2.6  Score=46.61  Aligned_cols=159  Identities=15%  Similarity=0.106  Sum_probs=91.9

Q ss_pred             cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeC---CcEEEEECC
Q 004971          371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF---PGVYVVNSD  447 (721)
Q Consensus       371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~---~~l~v~d~~  447 (721)
                      .+..++.|+||+.+++...+.        ..+++...... .........-..+.|.++| ++-.+.+   ..|..+.-.
T Consensus       344 ~~~s~avS~~g~~~A~~~~~~--------~~l~~~~~g~~-~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~  413 (573)
T PRK13614        344 GPASPAESPVSQTVAFLNGSR--------TTLYTVSPGQP-ARALTSGSTLTRPSFSPQD-WVWTAGPGGNGRIVAYRPT  413 (573)
T ss_pred             cccceeecCCCceEEEecCCC--------cEEEEecCCCc-ceeeecCCCccCCcccCCC-CEEEeeCCCCceEEEEecC
Confidence            456789999999999864322        24554443222 1111112223458899888 5555432   245555433


Q ss_pred             C-CceE-----EEe----ec-CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC-----CC
Q 004971          448 G-SNRR-----QVY----FK-NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN-----GK  511 (721)
Q Consensus       448 ~-g~~~-----~l~----~~-~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~-----~~  511 (721)
                      + ++..     .+.    .+ .+..+..|+||.++++....    .....+.|-.+..+..   +..+.|+..     ..
T Consensus       414 g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~----~g~~~V~va~V~R~~~---G~P~~L~~~~~~~~~~  486 (573)
T PRK13614        414 GVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQ----NGKSRVQVAGIVRNED---GTPRELTAPITLAADS  486 (573)
T ss_pred             CCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEe----CCccEEEEEEEEeCCC---CCeEEccCceecccCC
Confidence            2 1111     121    23 48899999999999998731    1123366666655433   233444432     13


Q ss_pred             CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971          512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE  546 (721)
Q Consensus       512 ~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~  546 (721)
                      ....+.|..++..++.....+++..++++.+..|.
T Consensus       487 ~~~sl~W~~~~sl~V~~~~~~~~~~~~~v~v~~g~  521 (573)
T PRK13614        487 DADTGAWVGDSTVVVTKASATSNVVPELLSVDAGQ  521 (573)
T ss_pred             CcceeEEcCCCEEEEEeccCCCcceEEEEEeCCCC
Confidence            56678999998866665544556678888886665

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.39  E-value=3.1  Score=40.96  Aligned_cols=192  Identities=11%  Similarity=0.081  Sum_probs=108.2

Q ss_pred             CCCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971          420 DGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV  494 (721)
Q Consensus       420 ~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~  494 (721)
                      ....+.|+||.+.|..+.  ...|.-++.+|.-.+.+.   -.....+.|.-+|++++.-.       .+..+.++.++.
T Consensus        87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dE-------R~~~l~~~~vd~  159 (316)
T COG3204          87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDE-------RDRALYLFTVDA  159 (316)
T ss_pred             cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEeh-------hcceEEEEEEcC
Confidence            356789999999988874  455666777776666666   33455678888887766542       456667777766


Q ss_pred             cCCCCccc--eEEcccCC---CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC--------CcCce
Q 004971          495 DDVDGVSA--VRRLTTNG---KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG--------PWSDT  561 (721)
Q Consensus       495 ~~~~~~~~--~~~l~~~~---~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~--------~~~~~  561 (721)
                      ++......  ...|....   ..-..++|+|..+.|++..++. ...||.++......  ...+...        -.++.
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~-P~~I~~~~~~~~~l--~~~~~~~~~~~~~~f~~DvS  236 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN-PIGIFEVTQSPSSL--SVHASLDPTADRDLFVLDVS  236 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC-CcEEEEEecCCccc--ccccccCcccccceEeeccc
Confidence            64310001  11122211   2334589999999999998753 34677776332111  1111111        11345


Q ss_pred             eeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC--C-----CCCcCCeEECCCCCEEEEEEec
Q 004971          562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG--S-----AGRANHPYFSPDGKSIVFTSDY  628 (721)
Q Consensus       562 ~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~-----~~~~~~~~~SpDG~~l~~~~~~  628 (721)
                      .+.|.+....|++.+...      ..|...|.++.-...+....  +     -.....++..++|. ||..+..
T Consensus       237 gl~~~~~~~~LLVLS~ES------r~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSEP  303 (316)
T COG3204         237 GLEFNAITNSLLVLSDES------RRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEP  303 (316)
T ss_pred             cceecCCCCcEEEEecCC------ceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEecC
Confidence            677887666666665543      36777887665332222110  1     11234567776665 4444443

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.38  E-value=2.9  Score=40.59  Aligned_cols=148  Identities=13%  Similarity=0.100  Sum_probs=85.0

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCC-CCccccccCCCCCEEEEEecCCCCCCcccceeee
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYG-VADFSPAVSPSGKYTAVASYGNKGWDGEVEMLST  249 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~-~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~  249 (721)
                      +|  ||. +.|.....+         .|=.+|+.+|+..++.-.. ..-.....-|||..-+.-.             ..
T Consensus        70 ap--dG~-VWft~qg~g---------aiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~-------------~~  124 (353)
T COG4257          70 AP--DGA-VWFTAQGTG---------AIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDT-------------GL  124 (353)
T ss_pred             CC--CCc-eEEecCccc---------cceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecC-------------cc
Confidence            56  776 666544432         5667889999988763222 1222225678886544411             13


Q ss_pred             eEEEEEcCCCceeEEEecc--C----CcceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCC--CCCc
Q 004971          250 DIYIFLTRDGTQRVKIVEN--G----GWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP--PGLH  321 (721)
Q Consensus       250 ~i~~~d~~~g~~~~l~~~~--~----~~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~  321 (721)
                      .|.+++.++++.++.....  .    +.+.|.++|.+.|+....--|.     ++ +..        ....+..  .+..
T Consensus       125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGr-----Ld-Pa~--------~~i~vfpaPqG~g  190 (353)
T COG4257         125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGR-----LD-PAR--------NVISVFPAPQGGG  190 (353)
T ss_pred             eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeecccccee-----cC-ccc--------CceeeeccCCCCC
Confidence            7888999899887765221  1    2568999999999543221111     11 111        1111111  2445


Q ss_pred             ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEee
Q 004971          322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELT  363 (721)
Q Consensus       322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~  363 (721)
                      ...++..| ||+ ++|.+...    ..|..+|..++-...+.
T Consensus       191 pyGi~atp-dGs-vwyaslag----naiaridp~~~~aev~p  226 (353)
T COG4257         191 PYGICATP-DGS-VWYASLAG----NAIARIDPFAGHAEVVP  226 (353)
T ss_pred             CcceEECC-CCc-EEEEeccc----cceEEcccccCCcceec
Confidence            56889999 997 66654332    23788888887544444

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.36  E-value=3.3  Score=47.57  Aligned_cols=186  Identities=11%  Similarity=0.031  Sum_probs=106.2

Q ss_pred             ceeCcCCCEEEEEe-CCcEEEEECCCCce-EEEe---ecCceeeEEc-CCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971          424 PSFSPKGDRIAFVE-FPGVYVVNSDGSNR-RQVY---FKNAFSTVWD-PVREAVVYTSGGPEFASESSEVDIISINVDDV  497 (721)
Q Consensus       424 ~~~SpDG~~la~~~-~~~l~v~d~~~g~~-~~l~---~~~~~~~~~s-pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~  497 (721)
                      ..|-....+|+..+ -..|.+||.+.... ..+.   ...++.+.-+ +.|..++...       .++.+++|+......
T Consensus      1171 ~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGf-------aDGsvRvyD~R~a~~ 1243 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGF-------ADGSVRVYDRRMAPP 1243 (1387)
T ss_pred             eehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEee-------cCCceEEeecccCCc
Confidence            35554444555554 45688999876542 2333   1223333222 2356666654       689999999876543


Q ss_pred             CCccceEEcccCCC--CCcceEEccCCCE-EEEEEeeCCceeEEEEECCCCcccc-eEECcCC--CcCceeeEEccCCCE
Q 004971          498 DGVSAVRRLTTNGK--NNAFPSVSPDGKW-IVFRSTRTGYKNLYIMDAEGGEGYG-LHRLTEG--PWSDTMCNWSPDGEW  571 (721)
Q Consensus       498 ~~~~~~~~l~~~~~--~~~~~~~SpDg~~-l~~~s~~~g~~~l~~~d~~~g~~~~-~~~l~~~--~~~~~~~~~SpDG~~  571 (721)
                      +.  .+.....+..  .+.++.+-+.|-. |+.++.   ++.|++||+....... +......  ....+.+...++...
T Consensus      1244 ds--~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~---~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapi 1318 (1387)
T KOG1517|consen 1244 DS--LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ---DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPI 1318 (1387)
T ss_pred             cc--cceeecccCCcccceeEEeecCCCcceeeecc---CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCe
Confidence            10  1222223332  2666777776554 776666   7889999998632211 1112211  123678888999988


Q ss_pred             EEEEEccCCCCCCceeEEEEecCCCceEEeeecC-----CCCCcCCeEECCCCCEEEEEEecC
Q 004971          572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG-----SAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       572 l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-----~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      ||.++..        .|.+|++.+.+...+...+     .-+.+..++|.|---.|+..+.+.
T Consensus      1319 iAsGs~q--------~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1319 IASGSAQ--------LIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADS 1373 (1387)
T ss_pred             eeecCcc--------eEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCc
Confidence            8877763        7999999876543332111     123446678888755556554444

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=95.36  E-value=0.77  Score=49.18  Aligned_cols=69  Identities=14%  Similarity=0.119  Sum_probs=55.9

Q ss_pred             CCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          421 GSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      ....+++|+.++++.. .++.|.+||...+...... .-.+..++|.|+|..+++++       +.+.+.+|++.++.
T Consensus       262 v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s-------~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  262 VICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGS-------EQGELQCFDMALSP  332 (545)
T ss_pred             ceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEc-------CCceEEEEEeecCc
Confidence            3446899999999888 6999999999777544443 44677899999999999986       57899999998865

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=95.35  E-value=4.1  Score=47.62  Aligned_cols=103  Identities=10%  Similarity=0.066  Sum_probs=65.2

Q ss_pred             EEEEE-eCCcEEEEECCCCce-E----EEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE
Q 004971          432 RIAFV-EFPGVYVVNSDGSNR-R----QVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR  505 (721)
Q Consensus       432 ~la~~-~~~~l~v~d~~~g~~-~----~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  505 (721)
                      .|+|. ..+.|..||+..... .    .+..|.+++++.+|-+.+++..+       ..+...+|++....     ....
T Consensus      1165 ~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGt-------s~G~l~lWDLRF~~-----~i~s 1232 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGT-------SRGQLVLWDLRFRV-----PILS 1232 (1431)
T ss_pred             eEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEec-------CCceEEEEEeecCc-----eeec
Confidence            45555 477888998765432 1    12267889999999999999886       56889999998754     2222


Q ss_pred             cccCC-CCCcceE---EccCCCEEEEEEeeCCceeEEEEECCCCcc
Q 004971          506 LTTNG-KNNAFPS---VSPDGKWIVFRSTRTGYKNLYIMDAEGGEG  547 (721)
Q Consensus       506 l~~~~-~~~~~~~---~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~  547 (721)
                      +.... .....+.   +.|....+++++. .+.+.|-+|+..+|..
T Consensus      1233 w~~P~~~~i~~v~~~~~~~~~S~~vs~~~-~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1233 WEHPARAPIRHVWLCPTYPQESVSVSAGS-SSNNEVSTWNMETGLR 1277 (1431)
T ss_pred             ccCcccCCcceEEeeccCCCCceEEEecc-cCCCceeeeecccCcc
Confidence            22211 2233333   3344455555543 2467888999888864

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.31  E-value=1.3  Score=46.75  Aligned_cols=155  Identities=15%  Similarity=0.129  Sum_probs=84.6

Q ss_pred             CCCcceEEccCCCEEEEEEee---------CCceeEEEEECCC--CcccceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971          511 KNNAFPSVSPDGKWIVFRSTR---------TGYKNLYIMDAEG--GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD  579 (721)
Q Consensus       511 ~~~~~~~~SpDg~~l~~~s~~---------~g~~~l~~~d~~~--g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~  579 (721)
                      .....++|.++|+.++.....         ....+|++++-.+  |.....+.+..+......+++.++|  |+++... 
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~-   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP-   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC-
Confidence            355678999999955543211         1123788876542  3322233444433344678999998  5555433 


Q ss_pred             CCCCCceeEEEE-ecCCC-----ceEEeeecC-C-----CCCcCCeEECCCCCEEEEEEecCCCc-CCCCCC--CCCCCC
Q 004971          580 NPGSGSFEMYLI-HPNGT-----GLRKLIQSG-S-----AGRANHPYFSPDGKSIVFTSDYGGIS-AEPIST--PHQYQP  644 (721)
Q Consensus       580 ~~~~~~~~i~~~-d~~~~-----~~~~l~~~~-~-----~~~~~~~~~SpDG~~l~~~~~~~~~~-~~~~~~--~~~~~~  644 (721)
                             .|+++ |.++.     +.+.+.... .     ......+.|.|||+ ||++....+.. ......  ......
T Consensus        91 -------~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~  162 (367)
T TIGR02604        91 -------DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGL  162 (367)
T ss_pred             -------eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCccccc
Confidence                   68776 44321     333343211 1     12356799999997 55544322110 000000  001122


Q ss_pred             CccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971          645 YGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       645 ~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~  676 (721)
                      .+.|++++.++++...+...-......+|+|.
T Consensus       163 ~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~  194 (367)
T TIGR02604       163 GGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSW  194 (367)
T ss_pred             CceEEEEecCCCeEEEEecCcCCCccceECCC
Confidence            35799999999888777654444567889885

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=95.27  E-value=2.6  Score=43.56  Aligned_cols=130  Identities=17%  Similarity=0.212  Sum_probs=71.8

Q ss_pred             ceEEccCCCEEEEEEeeC----CceeEEEEECCCCcccceEECcC-------------CCcCceeeEEccCCCEEEEEEc
Q 004971          515 FPSVSPDGKWIVFRSTRT----GYKNLYIMDAEGGEGYGLHRLTE-------------GPWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       515 ~~~~SpDg~~l~~~s~~~----g~~~l~~~d~~~g~~~~~~~l~~-------------~~~~~~~~~~SpDG~~l~~~~~  577 (721)
                      .+++.++|..+ ++.+..    ....|+.++.+ |+......+..             .......++++|||+.|+....
T Consensus        89 gi~~~~~g~~~-is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen   89 GIAVPPDGSFW-ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             HeEEecCCCEE-EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            56776777644 444431    12789999988 54311111111             1223568999999997776654


Q ss_pred             cCCCCC---------CceeEEEEecCCCc--eEEe-eecC------CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCC
Q 004971          578 RDNPGS---------GSFEMYLIHPNGTG--LRKL-IQSG------SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTP  639 (721)
Q Consensus       578 ~~~~~~---------~~~~i~~~d~~~~~--~~~l-~~~~------~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~  639 (721)
                      ..-...         ....|+.+|..+..  ..+. ....      ....+..+.+-+|++.|+.-......        
T Consensus       167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~--------  238 (326)
T PF13449_consen  167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPG--------  238 (326)
T ss_pred             ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCC--------
Confidence            321101         12568888887622  1221 1111      23456778899999977765542210        


Q ss_pred             CCCCCCccEEEEEcCCC
Q 004971          640 HQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       640 ~~~~~~~~l~~~d~~~~  656 (721)
                        ......||.+++..-
T Consensus       239 --~~~~~ri~~v~l~~a  253 (326)
T PF13449_consen  239 --TGNYKRIYRVDLSDA  253 (326)
T ss_pred             --ccceEEEEEEEcccc
Confidence              111346898887643

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=95.15  E-value=0.11  Score=41.45  Aligned_cols=71  Identities=18%  Similarity=0.227  Sum_probs=48.0

Q ss_pred             eEEccCCCEEEEEEee---------------CCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCC
Q 004971          516 PSVSPDGKWIVFRSTR---------------TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN  580 (721)
Q Consensus       516 ~~~SpDg~~l~~~s~~---------------~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~  580 (721)
                      +.+.+++..|+|+...               ....+|+.+|+.+++   .+.+..+-...+.+++|||++.|+++.... 
T Consensus         3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~---~~vl~~~L~fpNGVals~d~~~vlv~Et~~-   78 (89)
T PF03088_consen    3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKE---TTVLLDGLYFPNGVALSPDESFVLVAETGR-   78 (89)
T ss_dssp             EEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTE---EEEEEEEESSEEEEEE-TTSSEEEEEEGGG-
T ss_pred             eeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCe---EEEehhCCCccCeEEEcCCCCEEEEEeccC-
Confidence            5667775667776542               236789999999998   666666555568899999999999888643 


Q ss_pred             CCCCceeEEEEecCC
Q 004971          581 PGSGSFEMYLIHPNG  595 (721)
Q Consensus       581 ~~~~~~~i~~~d~~~  595 (721)
                           .+|.+|-+++
T Consensus        79 -----~Ri~rywl~G   88 (89)
T PF03088_consen   79 -----YRILRYWLKG   88 (89)
T ss_dssp             -----TEEEEEESSS
T ss_pred             -----ceEEEEEEeC
Confidence                 4788777654

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.13  E-value=1.1  Score=43.72  Aligned_cols=181  Identities=12%  Similarity=0.080  Sum_probs=97.5

Q ss_pred             ceeCcCCCEEEEE---eCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971          424 PSFSPKGDRIAFV---EFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD  498 (721)
Q Consensus       424 ~~~SpDG~~la~~---~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~  498 (721)
                      +.+..||..+-.+   +.+.|..+|+++|+...-.  +...+.--..--+.+|+..+      ...+...+|+.+.  - 
T Consensus        50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLT------Wk~~~~f~yd~~t--l-  120 (264)
T PF05096_consen   50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLT------WKEGTGFVYDPNT--L-  120 (264)
T ss_dssp             EEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEE------SSSSEEEEEETTT--T-
T ss_pred             EEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEE------ecCCeEEEEcccc--c-
Confidence            4555556433333   3568999999999854332  22233222222355666655      2345555555432  1 


Q ss_pred             CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCc---CceeeEEccCCCEEEEE
Q 004971          499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW---SDTMCNWSPDGEWIAFA  575 (721)
Q Consensus       499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~---~~~~~~~SpDG~~l~~~  575 (721)
                        ....++.-. +.-..++  .||+.|+.+..   ..+|+.+|+++-+......++....   ..+.+-|- +|. |+.-
T Consensus       121 --~~~~~~~y~-~EGWGLt--~dg~~Li~SDG---S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyAN  190 (264)
T PF05096_consen  121 --KKIGTFPYP-GEGWGLT--SDGKRLIMSDG---SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYAN  190 (264)
T ss_dssp             --EEEEEEE-S-SS--EEE--ECSSCEEEE-S---SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEE
T ss_pred             --eEEEEEecC-CcceEEE--cCCCEEEEECC---ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEE
Confidence              123333222 2223333  78898887765   7899999998765422223333322   24556665 553 5544


Q ss_pred             EccCCCCCCceeEEEEecCCCceEEeeecC--------------CCCCcCCeEECCCCCEEEEEEecC
Q 004971          576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSG--------------SAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       576 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--------------~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      -...      ..|.+.|..+|++.......              .....+.++|.|+...|+++...-
T Consensus       191 VW~t------d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~W  252 (264)
T PF05096_consen  191 VWQT------DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLW  252 (264)
T ss_dssp             ETTS------SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-
T ss_pred             eCCC------CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCC
Confidence            4432      38999999999987765210              023347799999999998887654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=94.92  E-value=0.56  Score=47.83  Aligned_cols=83  Identities=17%  Similarity=0.189  Sum_probs=58.8

Q ss_pred             ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce--EEeeecCCCCCcC
Q 004971          534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL--RKLIQSGSAGRAN  611 (721)
Q Consensus       534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~  611 (721)
                      ..+|+.||..+.+   .+.|..+-...+.++.|||+..++++....      ..|.+|-+.+.+.  ..+...+..+...
T Consensus       198 ~GRl~~YD~~tK~---~~VLld~L~F~NGlaLS~d~sfvl~~Et~~------~ri~rywi~g~k~gt~EvFa~~LPG~PD  268 (376)
T KOG1520|consen  198 TGRLFRYDPSTKV---TKVLLDGLYFPNGLALSPDGSFVLVAETTT------ARIKRYWIKGPKAGTSEVFAEGLPGYPD  268 (376)
T ss_pred             ccceEEecCcccc---hhhhhhcccccccccCCCCCCEEEEEeecc------ceeeeeEecCCccCchhhHhhcCCCCCc
Confidence            5679999998877   566666666668899999999999988653      3677776666543  1233323456778


Q ss_pred             CeEECCCCCEEEEE
Q 004971          612 HPYFSPDGKSIVFT  625 (721)
Q Consensus       612 ~~~~SpDG~~l~~~  625 (721)
                      ++..+++|.+.+-.
T Consensus       269 NIR~~~~G~fWVal  282 (376)
T KOG1520|consen  269 NIRRDSTGHFWVAL  282 (376)
T ss_pred             ceeECCCCCEEEEE
Confidence            89999999765444

>PRK13615 lipoprotein LpqB; Provisional

Probab=94.90  E-value=6.2  Score=43.58  Aligned_cols=156  Identities=10%  Similarity=-0.037  Sum_probs=90.6

Q ss_pred             ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeC-CcEEEEEC-CCC
Q 004971          372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF-PGVYVVNS-DGS  449 (721)
Q Consensus       372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~-~~l~v~d~-~~g  449 (721)
                      ...++.|+||+.+++...  .       ..+++....+....+ .....-..|.|.++| ++-.+.+ ....+... .+|
T Consensus       336 ~~s~avS~dg~~~A~v~~--~-------~~l~vg~~~~~~~~~-~~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G  404 (557)
T PRK13615        336 ADAATLSADGRQAAVRNA--S-------GVWSVGDGDRDAVLL-DTRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDG  404 (557)
T ss_pred             cccceEcCCCceEEEEcC--C-------ceEEEecCCCcceee-ccCCccccCcCcCCC-CEEEEeCCCceEEEEecCCC
Confidence            357899999999998743  1       234554333221111 111123458898888 5554422 22222222 234


Q ss_pred             ceEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc-------ccCCCCCcceE
Q 004971          450 NRRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL-------TTNGKNNAFPS  517 (721)
Q Consensus       450 ~~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~  517 (721)
                      +...+.     .+.+..+..|+||.++++....    ...+++.|-.+..+++    ....|       .........+.
T Consensus       405 ~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~----~g~~~V~va~V~R~~~----~P~~L~~~p~~l~~~l~~v~sl~  476 (557)
T PRK13615        405 VGHPVAVSWTATGRVVSLEVARDGARVLVQLET----GAGPQLLVASIVRDGG----VPTSLTTTPLELLASPGTPLDAT  476 (557)
T ss_pred             ceEEeeccccCCCeeEEEEeCCCccEEEEEEec----CCCCEEEEEEEEeCCC----cceEeeeccEEcccCcCcceeeE
Confidence            444444     3568899999999999998642    1345676665655332    22333       22224667789


Q ss_pred             EccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971          518 VSPDGKWIVFRSTRTGYKNLYIMDAEGGE  546 (721)
Q Consensus       518 ~SpDg~~l~~~s~~~g~~~l~~~d~~~g~  546 (721)
                      |..+++.++......++..++++.+.+..
T Consensus       477 W~~~~~laVl~~~~~~~~~v~~v~v~g~~  505 (557)
T PRK13615        477 WVDELDVATLTLAPDGERQVELHQVGGPS  505 (557)
T ss_pred             EcCCCEEEEEeccCCCCceEEEEECCCcc
Confidence            99988855554333455788999998554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=94.82  E-value=2.7  Score=49.04  Aligned_cols=201  Identities=9%  Similarity=0.003  Sum_probs=114.4

Q ss_pred             CcCCCEEEEE-eCCcEEEEECCC---C--ce-EEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971          427 SPKGDRIAFV-EFPGVYVVNSDG---S--NR-RQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD  495 (721)
Q Consensus       427 SpDG~~la~~-~~~~l~v~d~~~---g--~~-~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~  495 (721)
                      ++++..++.. .++.+.+|++..   +  .. ..++    ...+..+..-+.|..+|+.+       .++.+++.+++..
T Consensus      1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t-------~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST-------KDGSVRVLRIDHY 1130 (1431)
T ss_pred             CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc-------CCCeEEEEEcccc
Confidence            4444666665 478899999742   1  11 1122    23445566667788888875       6788998888863


Q ss_pred             CCCCc-cceEEcccCC--CCCcc-eEEcc-CCC-EEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCC
Q 004971          496 DVDGV-SAVRRLTTNG--KNNAF-PSVSP-DGK-WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG  569 (721)
Q Consensus       496 ~~~~~-~~~~~l~~~~--~~~~~-~~~Sp-Dg~-~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG  569 (721)
                      ..... ....++....  +.+.. -++.. ++. .|+++..   ...|..||+......-..+.....+.++.++.+|-+
T Consensus      1131 ~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~---~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~ 1207 (1431)
T KOG1240|consen 1131 NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATD---LSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWC 1207 (1431)
T ss_pred             ccccceeeeeecccccCCCceEEeecccccccceeEEEEEe---ccceEEecchhhhhHHhhhcCccccceeEEEecCCc
Confidence            21000 0111111111  11111 12322 333 5666666   678999998765421122223334667899999999


Q ss_pred             CEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEE---CCCCCEEEEEEecCCCcCCCCCCCCCCCCCc
Q 004971          570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF---SPDGKSIVFTSDYGGISAEPISTPHQYQPYG  646 (721)
Q Consensus       570 ~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~---SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~  646 (721)
                      .|++.+..++       .+-+||+.=+.+..-...++...+..+..   .|...++++++....               +
T Consensus      1208 ~WlviGts~G-------~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~---------------n 1265 (1431)
T KOG1240|consen 1208 NWLVIGTSRG-------QLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN---------------N 1265 (1431)
T ss_pred             eEEEEecCCc-------eEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCC---------------C
Confidence            9999999886       79999997655443333223334444443   344456666555332               2


Q ss_pred             cEEEEEcCCCCeE
Q 004971          647 EIFKIKLDGSDLK  659 (721)
Q Consensus       647 ~l~~~d~~~~~~~  659 (721)
                      +|-.|++.+|.-+
T Consensus      1266 evs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQ 1278 (1431)
T ss_pred             ceeeeecccCcce
Confidence            5888888887443

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.61  E-value=4.8  Score=39.16  Aligned_cols=151  Identities=13%  Similarity=0.060  Sum_probs=82.4

Q ss_pred             CCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe------ecCceeeEEcCCCCeEEEEecCC--CCCCCCCcEEEEEEE
Q 004971          422 SFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY------FKNAFSTVWDPVREAVVYTSGGP--EFASESSEVDIISIN  493 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~------~~~~~~~~~spdg~~la~~~~~~--~~~~~~~~~~i~~~~  493 (721)
                      ..+...|||..-+.-....|..+|.++.+.++..      ..+.....|.++|..-+....+-  ++....+.+++|...
T Consensus       107 hgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP  186 (353)
T COG4257         107 HGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP  186 (353)
T ss_pred             ceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC
Confidence            4467788886433333337777887777766554      45667899999996554443221  011112223333322


Q ss_pred             ccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC-CcCceeeEEccCCCEE
Q 004971          494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-PWSDTMCNWSPDGEWI  572 (721)
Q Consensus       494 ~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~-~~~~~~~~~SpDG~~l  572 (721)
                      .               ....+.++..|||. +.|.+-.  .+.|-++|..++....+ ..... ......+.-+|-|+.-
T Consensus       187 q---------------G~gpyGi~atpdGs-vwyasla--gnaiaridp~~~~aev~-p~P~~~~~gsRriwsdpig~~w  247 (353)
T COG4257         187 Q---------------GGGPYGICATPDGS-VWYASLA--GNAIARIDPFAGHAEVV-PQPNALKAGSRRIWSDPIGRAW  247 (353)
T ss_pred             C---------------CCCCcceEECCCCc-EEEEecc--ccceEEcccccCCccee-cCCCcccccccccccCccCcEE
Confidence            1               13566789999998 4444432  56788999888863211 12221 1111233334556532


Q ss_pred             EEEEccCCCCCCceeEEEEecCCCce
Q 004971          573 AFASDRDNPGSGSFEMYLIHPNGTGL  598 (721)
Q Consensus       573 ~~~~~~~~~~~~~~~i~~~d~~~~~~  598 (721)
                      +  +.-     +...++++|.....-
T Consensus       248 i--ttw-----g~g~l~rfdPs~~sW  266 (353)
T COG4257         248 I--TTW-----GTGSLHRFDPSVTSW  266 (353)
T ss_pred             E--ecc-----CCceeeEeCcccccc
Confidence            2  222     334899999876543

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.38  E-value=7.3  Score=40.30  Aligned_cols=125  Identities=16%  Similarity=0.158  Sum_probs=74.3

Q ss_pred             CCCCceeCcCCCEEEEE-eC------CcEEEEECCCCceEEEe-----------------ecCceeeEEcCCCCeEEEEe
Q 004971          420 DGSFPSFSPKGDRIAFV-EF------PGVYVVNSDGSNRRQVY-----------------FKNAFSTVWDPVREAVVYTS  475 (721)
Q Consensus       420 ~~~~~~~SpDG~~la~~-~~------~~l~v~d~~~g~~~~l~-----------------~~~~~~~~~spdg~~la~~~  475 (721)
                      +...+++.++|..++.. ..      ..|+.++.++.....+.                 +.....++++|||+.|+++.
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            34456777777655444 35      78999998844433331                 12345799999999888877


Q ss_pred             cCCCCCCCC-------CcEEEEEEEccCCCCc-cc-eEEccc-----CCCCCcceEEccCCCEEEEEEee----CCceeE
Q 004971          476 GGPEFASES-------SEVDIISINVDDVDGV-SA-VRRLTT-----NGKNNAFPSVSPDGKWIVFRSTR----TGYKNL  537 (721)
Q Consensus       476 ~~~~~~~~~-------~~~~i~~~~~~~~~~~-~~-~~~l~~-----~~~~~~~~~~SpDg~~l~~~s~~----~g~~~l  537 (721)
                      ..+......       ...+|+.++....... .. .-++..     ....+..+.+-+|++.|+.....    ....+|
T Consensus       166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri  245 (326)
T PF13449_consen  166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRI  245 (326)
T ss_pred             CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEE
Confidence            544222211       2377888876542100 11 122222     23456678899999977665442    235589


Q ss_pred             EEEECCC
Q 004971          538 YIMDAEG  544 (721)
Q Consensus       538 ~~~d~~~  544 (721)
                      |.+++..
T Consensus       246 ~~v~l~~  252 (326)
T PF13449_consen  246 YRVDLSD  252 (326)
T ss_pred             EEEEccc
Confidence            9998764

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.33  E-value=0.32  Score=52.84  Aligned_cols=107  Identities=12%  Similarity=0.092  Sum_probs=72.7

Q ss_pred             eeCcCCCEEEEE-eCCcEEEEECCCCceEEEee----cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971          425 SFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVYF----KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG  499 (721)
Q Consensus       425 ~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~~----~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~  499 (721)
                      .++..+++|++. +.+.||+++-.++..+.+..    +.......|++...+|+++       ..+.+.++.++....  
T Consensus        40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt-------~~g~V~v~ql~~~~p--  110 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGT-------ASGRVSVFQLNKELP--  110 (726)
T ss_pred             EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhc-------CCceEEeehhhccCC--
Confidence            455567788887 57889999988888766652    3344567788888887775       467777777766332  


Q ss_pred             ccceEEccc----CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCC
Q 004971          500 VSAVRRLTT----NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG  544 (721)
Q Consensus       500 ~~~~~~l~~----~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~  544 (721)
                       .....++.    +...+..+.||+|++++++...   .+.|....+++
T Consensus       111 -~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~---~Gkv~~~~L~s  155 (726)
T KOG3621|consen  111 -RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS---QGKVVLTELDS  155 (726)
T ss_pred             -CcceeeccccccCCceEEEEEecccccEEeecCC---CceEEEEEech
Confidence             22223332    2346788999999999998875   45566655554

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=94.28  E-value=1.4  Score=46.72  Aligned_cols=189  Identities=10%  Similarity=0.060  Sum_probs=109.6

Q ss_pred             ceeCcCCCEEEEEe-CCcEEEEECC------CCceEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEE
Q 004971          424 PSFSPKGDRIAFVE-FPGVYVVNSD------GSNRRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS  491 (721)
Q Consensus       424 ~~~SpDG~~la~~~-~~~l~v~d~~------~g~~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~  491 (721)
                      ..+.|-...|+.++ ++.|.+|++.      .+...++.     .+.+..+..++.++.++..+       .++.++.|.
T Consensus       300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg-------~Dg~I~~w~  372 (577)
T KOG0642|consen  300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG-------IDGTIRCWN  372 (577)
T ss_pred             hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec-------cCceeeeec
Confidence            44555444555553 6677888872      12233333     56778899999999998875       689999997


Q ss_pred             EEccCCC-C----ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce----------------
Q 004971          492 INVDDVD-G----VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL----------------  550 (721)
Q Consensus       492 ~~~~~~~-~----~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~----------------  550 (721)
                      +..+... .    ......+..+...++.+++|+...+|+..+.   +..++.|+.....+...                
T Consensus       373 ~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~---DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~s  449 (577)
T KOG0642|consen  373 LPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSS---DGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTS  449 (577)
T ss_pred             cCCCCCcccccCcchhccceeccccceeeeeecccccceeeecC---CceEEeeccCCcCccccCCccccCCcceEeecc
Confidence            7643220 0    0112233445556777888888888887766   67788877654432000                


Q ss_pred             -------------------------EECcCC-----C---cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971          551 -------------------------HRLTEG-----P---WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG  597 (721)
Q Consensus       551 -------------------------~~l~~~-----~---~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~  597 (721)
                                               ..+...     .   -.+..+.+.|.+. +.|+....      ..|..+|..+++
T Consensus       450 s~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed------~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  450 SRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHED------RSIRFFDNKTGK  522 (577)
T ss_pred             chhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEecccC------Cceecccccccc
Confidence                                     000000     0   0122334445443 33333221      367777776665


Q ss_pred             eEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       598 ~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      +..-.. .+...+.++++.|+|-+|...+.+..
T Consensus       523 ~l~s~~-a~~~svtslai~~ng~~l~s~s~d~s  554 (577)
T KOG0642|consen  523 ILHSMV-AHKDSVTSLAIDPNGPYLMSGSHDGS  554 (577)
T ss_pred             cchhee-eccceecceeecCCCceEEeecCCce
Confidence            432211 15567788999999999887776653

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=94.07  E-value=0.15  Score=33.45  Aligned_cols=36  Identities=22%  Similarity=0.383  Sum_probs=30.5

Q ss_pred             eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEe
Q 004971          550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH  592 (721)
Q Consensus       550 ~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d  592 (721)
                      +..+..+...+..++|+|+++.|+.++.+.       .|++||
T Consensus         4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~-------~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSPDGNFLASGSSDG-------TIRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEETTSSEEEEEETTS-------EEEEEE
T ss_pred             EEEEcCCCCcEEEEEEecccccceeeCCCC-------EEEEEC
Confidence            556667777889999999999999999885       888886

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=94.01  E-value=4.7  Score=45.00  Aligned_cols=196  Identities=9%  Similarity=0.077  Sum_probs=117.0

Q ss_pred             ceeCcCCCEEEEE--eCCcEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971          424 PSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD  498 (721)
Q Consensus       424 ~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~  498 (721)
                      +.|.--.+++++.  ....|..-.+.+++++.+..   .....++...-++.++++-      ....++.+-.++-.   
T Consensus      1030 idfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtD------S~lD~IevA~LdG~--- 1100 (1289)
T KOG1214|consen 1030 IDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTD------SVLDKIEVALLDGS--- 1100 (1289)
T ss_pred             eecccccceEEEeecCCCccccccccCCCCceeecccCCCccceeeeeccceeeeec------cccchhheeecCCc---
Confidence            3454445555555  35667778888888877772   2233455655677777763      23345555554432   


Q ss_pred             CccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971          499 GVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       499 ~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~  577 (721)
                         ..+.|...+ .+...+...+=+..|++......+..|-..+.++...+  ..+....+-.+.+.|.|..+.|.+...
T Consensus      1101 ---~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrR--ilin~DigLPNGLtfdpfs~~LCWvDA 1175 (1289)
T KOG1214|consen 1101 ---ERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRR--ILINTDIGLPNGLTFDPFSKLLCWVDA 1175 (1289)
T ss_pred             ---eeeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCCccce--EEeecccCCCCCceeCcccceeeEEec
Confidence               333343333 56677888888889999987666777888888755421  112222233467899999998888776


Q ss_pred             cCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971          578 RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       578 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  657 (721)
                      ..      .++-....++...+.+..    ....-++...+++.+|++.-+.+                .|..+++-+++
T Consensus      1176 Gt------~rleC~~p~g~gRR~i~~----~LqYPF~itsy~~~fY~TDWk~n----------------~vvsv~~~~~~ 1229 (1289)
T KOG1214|consen 1176 GT------KRLECTLPDGTGRRVIQN----NLQYPFSITSYADHFYHTDWKRN----------------GVVSVNKHSGQ 1229 (1289)
T ss_pred             CC------cceeEecCCCCcchhhhh----cccCceeeeeccccceeeccccC----------------ceEEeeccccc
Confidence            43      244444443333333322    22344566778888888766553                37778876665


Q ss_pred             eE
Q 004971          658 LK  659 (721)
Q Consensus       658 ~~  659 (721)
                      .+
T Consensus      1230 ~t 1231 (1289)
T KOG1214|consen 1230 FT 1231 (1289)
T ss_pred             cc
Confidence            43

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=93.83  E-value=0.55  Score=37.61  Aligned_cols=66  Identities=14%  Similarity=0.099  Sum_probs=41.4

Q ss_pred             eeEEccCCCEEEEEEccCCC-----------CCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          562 MCNWSPDGEWIAFASDRDNP-----------GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       562 ~~~~SpDG~~l~~~~~~~~~-----------~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      .+..++++..|+|+.....-           ......|+.||+.+++.+.+...  -...+.+++|+|+++|+++....
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~--L~fpNGVals~d~~~vlv~Et~~   78 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG--LYFPNGVALSPDESFVLVAETGR   78 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE--ESSEEEEEE-TTSSEEEEEEGGG
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC--CCccCeEEEcCCCCEEEEEeccC
Confidence            45666775567776653211           12446899999999988777652  24567899999999998877654

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=93.47  E-value=5.1  Score=39.25  Aligned_cols=165  Identities=9%  Similarity=-0.042  Sum_probs=92.3

Q ss_pred             CCCcEEEEEEEccCCCCccceEEcccCC---CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcC
Q 004971          483 ESSEVDIISINVDDVDGVSAVRRLTTNG---KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS  559 (721)
Q Consensus       483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~  559 (721)
                      ..+.+.+|+.+....  ....+.|....   .....+.|++-|..+++...   +.++-.++......+.+..+..+...
T Consensus        93 a~G~i~~~r~~~~~s--s~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s---~G~~~~v~~t~~~le~vq~wk~He~E  167 (339)
T KOG0280|consen   93 ARGQIQLYRNDEDES--SVHLRGLSSKKISVVEALSLDISTSGTKIFVSDS---RGSISGVYETEMVLEKVQTWKVHEFE  167 (339)
T ss_pred             ccceEEEEeecccee--eeeecccchhhhhheeeeEEEeeccCceEEEEcC---CCcEEEEecceeeeeeccccccccee
Confidence            356777777765431  01122222221   12345789999998776654   34444554443332112234445555


Q ss_pred             ceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee-cCCCCCcCCeEECC-CCCEEEEEEecCCCcCCCCC
Q 004971          560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ-SGSAGRANHPYFSP-DGKSIVFTSDYGGISAEPIS  637 (721)
Q Consensus       560 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~  637 (721)
                      ..-..|+-...-|+|...+.      ..|..||+.-.+...... ..|...+.++.-|| ++.+|+..+.+..       
T Consensus       168 ~Wta~f~~~~pnlvytGgDD------~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-------  234 (339)
T KOG0280|consen  168 AWTAKFSDKEPNLVYTGGDD------GSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-------  234 (339)
T ss_pred             eeeeecccCCCceEEecCCC------ceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-------
Confidence            55666765555566666553      378889987333221110 01334455555454 5677777777663       


Q ss_pred             CCCCCCCCccEEEEEcCC-CCeEEeccCCCCCCCceecC
Q 004971          638 TPHQYQPYGEIFKIKLDG-SDLKRLTQNSFEDGTPAWGP  675 (721)
Q Consensus       638 ~~~~~~~~~~l~~~d~~~-~~~~~lt~~~~~~~~~~~sp  675 (721)
                                |.+||+.. +++..=+..+++++...++|
T Consensus       235 ----------i~~~DtRnm~kPl~~~~v~GGVWRi~~~p  263 (339)
T KOG0280|consen  235 ----------IRVLDTRNMGKPLFKAKVGGGVWRIKHHP  263 (339)
T ss_pred             ----------eeeeehhcccCccccCccccceEEEEecc
Confidence                      88888763 55555556677888888888

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.43  E-value=5.9  Score=40.56  Aligned_cols=211  Identities=13%  Similarity=0.052  Sum_probs=105.3

Q ss_pred             eCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971          315 VTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST  394 (721)
Q Consensus       315 ~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~  394 (721)
                      +..++..+.+++||| ..+-|+.....    ...|.++|+++........   ....++..+|.-|....+|+...++  
T Consensus       189 lp~~g~~IrdlafSp-~~~GLl~~asl----~nkiki~dlet~~~vssy~---a~~~~wSC~wDlde~h~IYaGl~nG--  258 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSP-FNEGLLGLASL----GNKIKIMDLETSCVVSSYI---AYNQIWSCCWDLDERHVIYAGLQNG--  258 (463)
T ss_pred             ccccchhhhhhccCc-cccceeeeecc----CceEEEEecccceeeehee---ccCCceeeeeccCCcceeEEeccCc--
Confidence            344455678999999 88744332222    2349999999876333221   1355778899999999999877665  


Q ss_pred             CCCCcceeEEEeccCCCCcceecccCC-CC----------ceeCcCCCEEEEEeCCcEEEEECCC--CceE---EEe-ec
Q 004971          395 REDGNNQLLLENIKSPLPDISLFRFDG-SF----------PSFSPKGDRIAFVEFPGVYVVNSDG--SNRR---QVY-FK  457 (721)
Q Consensus       395 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~----------~~~SpDG~~la~~~~~~l~v~d~~~--g~~~---~l~-~~  457 (721)
                            -+++.|.+.+...+....... ..          ...++-|..|++.. ..+..|....  +...   ++. .+
T Consensus       259 ------~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~l-t~l~f~ei~~s~~~~p~vlele~pG  331 (463)
T KOG1645|consen  259 ------MVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFAL-TVLQFYEIVFSAECLPCVLELEPPG  331 (463)
T ss_pred             ------eEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeee-hhhhhhhhhccccCCCcccccCCCc
Confidence                  367777766543322211100 00          02233344444442 2233333322  2221   222 45


Q ss_pred             CceeeEEcCCCCeEEEEecCCCCCCCCCcEE--EEEEEccCC-CCccceEEcccCC----CCCcceEEccCCCEEEEEEe
Q 004971          458 NAFSTVWDPVREAVVYTSGGPEFASESSEVD--IISINVDDV-DGVSAVRRLTTNG----KNNAFPSVSPDGKWIVFRST  530 (721)
Q Consensus       458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~--i~~~~~~~~-~~~~~~~~l~~~~----~~~~~~~~SpDg~~l~~~s~  530 (721)
                      ...++.+.+-.+.++.+.+..   ......+  +..++...+ -...+.+......    .......-.+|...|+...+
T Consensus       332 ~cismqy~~~snh~l~tyRs~---pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd  408 (463)
T KOG1645|consen  332 ICISMQYHGVSNHLLLTYRSN---PNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD  408 (463)
T ss_pred             ceeeeeecCccceEEEEecCC---CCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecC
Confidence            566777777777777765321   0111111  112221111 0000111111110    00111223567776666554


Q ss_pred             eCCceeEEEEECCCCcc
Q 004971          531 RTGYKNLYIMDAEGGEG  547 (721)
Q Consensus       531 ~~g~~~l~~~d~~~g~~  547 (721)
                        ...+|.++|+.+.+.
T Consensus       409 --~tn~lil~D~~s~ev  423 (463)
T KOG1645|consen  409 --STNELILQDPHSFEV  423 (463)
T ss_pred             --CcceeEEeccchhhe
Confidence              267899999998874

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=93.42  E-value=11  Score=39.21  Aligned_cols=149  Identities=13%  Similarity=0.155  Sum_probs=82.2

Q ss_pred             CEEEEE-eCCcEEEEECCCCceEEEeecCcee----eEEcCCCCe--EEEEecCCCCCCCCCcEEEEEEEccCCCCccce
Q 004971          431 DRIAFV-EFPGVYVVNSDGSNRRQVYFKNAFS----TVWDPVREA--VVYTSGGPEFASESSEVDIISINVDDVDGVSAV  503 (721)
Q Consensus       431 ~~la~~-~~~~l~v~d~~~g~~~~l~~~~~~~----~~~spdg~~--la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  503 (721)
                      +.|+-+ ....|++||+++...+.+..+....    ..|.-.|+.  |++++++.   .....+.+|.++...+    .+
T Consensus        69 SlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~---~g~n~l~~f~id~~~g----~L  141 (381)
T PF02333_consen   69 SLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRS---DGRNSLRLFRIDPDTG----EL  141 (381)
T ss_dssp             -EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-C---CCT-EEEEEEEETTTT----EE
T ss_pred             ceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCc---CCCCeEEEEEecCCCC----cc
Confidence            344444 4678999999999887776333222    122225655  56666421   1135799999986543    55


Q ss_pred             EEcccCC-------CCCcceEE--cc-CCCEEEEEEeeCCceeEEEEE-CCCCcc--cceEECcCCCcCceeeEEccCCC
Q 004971          504 RRLTTNG-------KNNAFPSV--SP-DGKWIVFRSTRTGYKNLYIMD-AEGGEG--YGLHRLTEGPWSDTMCNWSPDGE  570 (721)
Q Consensus       504 ~~l~~~~-------~~~~~~~~--Sp-Dg~~l~~~s~~~g~~~l~~~d-~~~g~~--~~~~~l~~~~~~~~~~~~SpDG~  570 (721)
                      +.+....       ...+.+++  +| +|+..+|...++|...-|.+. -..|..  +.++.+.-. .....++....-.
T Consensus       142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~-sQ~EGCVVDDe~g  220 (381)
T PF02333_consen  142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG-SQPEGCVVDDETG  220 (381)
T ss_dssp             EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S-S-EEEEEEETTTT
T ss_pred             eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC-CcceEEEEecccC
Confidence            5554321       12334444  33 688888888877765555543 333432  224444432 2346788887777


Q ss_pred             EEEEEEccCCCCCCceeEEEEecC
Q 004971          571 WIAFASDRDNPGSGSFEMYLIHPN  594 (721)
Q Consensus       571 ~l~~~~~~~~~~~~~~~i~~~d~~  594 (721)
                      +|+++..+.       .||.|+.+
T Consensus       221 ~LYvgEE~~-------GIW~y~Ae  237 (381)
T PF02333_consen  221 RLYVGEEDV-------GIWRYDAE  237 (381)
T ss_dssp             EEEEEETTT-------EEEEEESS
T ss_pred             CEEEecCcc-------EEEEEecC
Confidence            888888764       89999986

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=93.35  E-value=2.8  Score=42.89  Aligned_cols=110  Identities=16%  Similarity=0.187  Sum_probs=72.0

Q ss_pred             CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCC-----cCceeeEEccCCCEEEEEEccCCC----
Q 004971          511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP-----WSDTMCNWSPDGEWIAFASDRDNP----  581 (721)
Q Consensus       511 ~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~-----~~~~~~~~SpDG~~l~~~~~~~~~----  581 (721)
                      ++...++|...|.-|+++..   ...|+.++..++.   .+.+....     ...+.+..+++| .|+|+.....-    
T Consensus       115 GRPLGl~f~~~ggdL~VaDA---YlGL~~V~p~g~~---a~~l~~~~~G~~~kf~N~ldI~~~g-~vyFTDSSsk~~~rd  187 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADA---YLGLLKVGPEGGL---AELLADEAEGKPFKFLNDLDIDPEG-VVYFTDSSSKYDRRD  187 (376)
T ss_pred             CCcceEEeccCCCeEEEEec---ceeeEEECCCCCc---ceeccccccCeeeeecCceeEcCCC-eEEEeccccccchhh
Confidence            67788999999988888877   7789999999876   33443221     112455666644 35554432100    


Q ss_pred             -------CCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          582 -------GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       582 -------~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                             .....+++.||..++..+.+..  .-...+.++.|||+.+++++....
T Consensus       188 ~~~a~l~g~~~GRl~~YD~~tK~~~VLld--~L~F~NGlaLS~d~sfvl~~Et~~  240 (376)
T KOG1520|consen  188 FVFAALEGDPTGRLFRYDPSTKVTKVLLD--GLYFPNGLALSPDGSFVLVAETTT  240 (376)
T ss_pred             eEEeeecCCCccceEEecCcccchhhhhh--cccccccccCCCCCCEEEEEeecc
Confidence                   0123468899988877666553  234457899999999998876544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=93.33  E-value=0.2  Score=32.90  Aligned_cols=37  Identities=22%  Similarity=0.311  Sum_probs=31.4

Q ss_pred             ceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEE
Q 004971          502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD  541 (721)
Q Consensus       502 ~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d  541 (721)
                      ....+..+...+..++|+|+++.|+..+.   +..|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~---D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSS---DGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEET---TSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCC---CCEEEEEC
Confidence            44566777788999999999999999997   78899986

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.18  E-value=8.5  Score=37.10  Aligned_cols=101  Identities=13%  Similarity=0.064  Sum_probs=50.6

Q ss_pred             CCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC
Q 004971          331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP  410 (721)
Q Consensus       331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  410 (721)
                      -|++++... .    .+.|++.+..+|......  ...+.--..+...+++..|+..+.+..         +|..|.++.
T Consensus        62 vgdfVV~GC-y----~g~lYfl~~~tGs~~w~f--~~~~~vk~~a~~d~~~glIycgshd~~---------~yalD~~~~  125 (354)
T KOG4649|consen   62 VGDFVVLGC-Y----SGGLYFLCVKTGSQIWNF--VILETVKVRAQCDFDGGLIYCGSHDGN---------FYALDPKTY  125 (354)
T ss_pred             ECCEEEEEE-c----cCcEEEEEecchhheeee--eehhhhccceEEcCCCceEEEecCCCc---------EEEeccccc
Confidence            455666543 2    233899999998532221  111222234667788888887666554         444444332


Q ss_pred             CCcceecccCC---CCceeCc-CCCEEEEE-eCCcEEEEECCCC
Q 004971          411 LPDISLFRFDG---SFPSFSP-KGDRIAFV-EFPGVYVVNSDGS  449 (721)
Q Consensus       411 ~~~~~~~~~~~---~~~~~Sp-DG~~la~~-~~~~l~v~d~~~g  449 (721)
                      - -+......+   ..|++.| ++. |+++ ..+.+.....+.+
T Consensus       126 ~-cVykskcgG~~f~sP~i~~g~~s-ly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  126 G-CVYKSKCGGGTFVSPVIAPGDGS-LYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             c-eEEecccCCceeccceecCCCce-EEEEeccceEEEEccCCC
Confidence            1 111111111   2356667 453 4444 4555555555544

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=93.02  E-value=5.1  Score=42.99  Aligned_cols=121  Identities=16%  Similarity=0.098  Sum_probs=65.8

Q ss_pred             EcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-----CCCcCceeeEEccCC------CEEE
Q 004971          505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-----EGPWSDTMCNWSPDG------EWIA  573 (721)
Q Consensus       505 ~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-----~~~~~~~~~~~SpDG------~~l~  573 (721)
                      .+...-.....++|.|||+.|+....   ..+|++++..++....+..+.     .+......++++||=      ++|+
T Consensus        24 ~va~GL~~Pw~maflPDG~llVtER~---~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lY  100 (454)
T TIGR03606        24 VLLSGLNKPWALLWGPDNQLWVTERA---TGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVY  100 (454)
T ss_pred             EEECCCCCceEEEEcCCCeEEEEEec---CCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEE
Confidence            33333346778999999976654442   367999987665422222222     123445678898873      4566


Q ss_pred             EEEccCCCCC---CceeEEEEecCCC-----ceEEeeecC---CCCCcCCeEECCCCCEEEEEEecC
Q 004971          574 FASDRDNPGS---GSFEMYLIHPNGT-----GLRKLIQSG---SAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       574 ~~~~~~~~~~---~~~~i~~~d~~~~-----~~~~l~~~~---~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      +.........   ....|.++.++..     ..+.+....   ....-..+.|.|||+ |+++..+.
T Consensus       101 vsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~  166 (454)
T TIGR03606       101 ISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQ  166 (454)
T ss_pred             EEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCC
Confidence            6543211000   1347877776421     122333211   112345689999997 66655554

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=93.01  E-value=0.12  Score=57.28  Aligned_cols=209  Identities=13%  Similarity=0.089  Sum_probs=119.9

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      ...-++||- +.++|+....     .+.|.++++.+|....-  ...|+..+..+.-|.||..++..+.-....     .
T Consensus      1103 ~fTc~afs~-~~~hL~vG~~-----~Geik~~nv~sG~~e~s--~ncH~SavT~vePs~dgs~~Ltsss~S~Pl-----s 1169 (1516)
T KOG1832|consen 1103 LFTCIAFSG-GTNHLAVGSH-----AGEIKIFNVSSGSMEES--VNCHQSAVTLVEPSVDGSTQLTSSSSSSPL-----S 1169 (1516)
T ss_pred             ceeeEEeec-CCceEEeeec-----cceEEEEEccCcccccc--ccccccccccccccCCcceeeeeccccCch-----H
Confidence            345678888 8899988543     34599999999974332  345667777788888998877654433311     2


Q ss_pred             eeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEE--Ee-----ecCceeeEEcCCCCeEE
Q 004971          401 QLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQ--VY-----FKNAFSTVWDPVREAVV  472 (721)
Q Consensus       401 ~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~--l~-----~~~~~~~~~spdg~~la  472 (721)
                      .+|-..-..+  ....+. ....+.||..-+.-+.. ......+||+.++.+.+  +.     ...-....|||+.+.++
T Consensus      1170 aLW~~~s~~~--~~Hsf~-ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1170 ALWDASSTGG--PRHSFD-EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             HHhccccccC--cccccc-ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            2332221111  111111 12234555433222222 35678899999887432  22     11224578999998776


Q ss_pred             EEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE
Q 004971          473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR  552 (721)
Q Consensus       473 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~  552 (721)
                      .            ..-+|++....     .++++.... ....-.|+|.|..++..+.        +||+.+=+.  +..
T Consensus      1247 n------------dGvLWDvR~~~-----aIh~FD~ft-~~~~G~FHP~g~eVIINSE--------IwD~RTF~l--Lh~ 1298 (1516)
T KOG1832|consen 1247 N------------DGVLWDVRIPE-----AIHRFDQFT-DYGGGGFHPSGNEVIINSE--------IWDMRTFKL--LHS 1298 (1516)
T ss_pred             e------------CceeeeeccHH-----HHhhhhhhe-ecccccccCCCceEEeech--------hhhhHHHHH--Hhc
Confidence            4            23577776542     333333332 3344589999999998886        677765432  333


Q ss_pred             CcCCCcCceeeEEccCCCEEEEE
Q 004971          553 LTEGPWSDTMCNWSPDGEWIAFA  575 (721)
Q Consensus       553 l~~~~~~~~~~~~SpDG~~l~~~  575 (721)
                      ++.-  ....+.|...|..+|..
T Consensus      1299 VP~L--dqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1299 VPSL--DQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             Cccc--cceEEEeccCccchhhh
Confidence            3322  22567777777755443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.87  E-value=11  Score=42.51  Aligned_cols=190  Identities=15%  Similarity=0.090  Sum_probs=99.0

Q ss_pred             eeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCC-cEEEEEEEccCCCC-
Q 004971          425 SFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESS-EVDIISINVDDVDG-  499 (721)
Q Consensus       425 ~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~-~~~i~~~~~~~~~~-  499 (721)
                      .|++.+..+++.+ .+.|+.++-.-...+-..  ...+...-|.-+++.+.++..+. . ..+. -+.||.++...+.. 
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed-~-~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGED-E-QGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeec-C-CCCceEEEEecccccCCCCC
Confidence            6788887888874 777887764322111111  22234445555665555443211 0 1122 57888886542211 


Q ss_pred             ccce--EEcccC-----CCCCcceEEccCCCEEEEEEeeCCceeEEEEECC--CCcccceEECcCCCcCceeeEEccCCC
Q 004971          500 VSAV--RRLTTN-----GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE--GGEGYGLHRLTEGPWSDTMCNWSPDGE  570 (721)
Q Consensus       500 ~~~~--~~l~~~-----~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~--~g~~~~~~~l~~~~~~~~~~~~SpDG~  570 (721)
                      +...  .++...     ......++.|-|=+.+|++-.   ++.|.++.-+  -.+.....-...+...++.+++--|++
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~---nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~  184 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFT---NGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK  184 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEec---CcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence            1112  122221     234455688888777777654   4555555321  111001223334566789999999999


Q ss_pred             EEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971          571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS  626 (721)
Q Consensus       571 ~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~  626 (721)
                      .++|.....       +|..|.+.+..+...+...++.....-++++--..++.+.
T Consensus       185 s~lFv~Tt~-------~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~  233 (933)
T KOG2114|consen  185 SVLFVATTE-------QVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG  233 (933)
T ss_pred             eeEEEEecc-------eeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec
Confidence            877777653       6777777765523222222444555566664322244443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.80  E-value=2.6  Score=45.43  Aligned_cols=110  Identities=16%  Similarity=0.132  Sum_probs=69.5

Q ss_pred             CCCceeCcCC-----CEEEEEeCCcEEEEECC--CCce-EEEe----------ecCceeeEEcCCCCeEEEEecCCCCCC
Q 004971          421 GSFPSFSPKG-----DRIAFVEFPGVYVVNSD--GSNR-RQVY----------FKNAFSTVWDPVREAVVYTSGGPEFAS  482 (721)
Q Consensus       421 ~~~~~~SpDG-----~~la~~~~~~l~v~d~~--~g~~-~~l~----------~~~~~~~~~spdg~~la~~~~~~~~~~  482 (721)
                      +..+.|+|-+     ..||+.....+.+|.+.  +.+. +.+.          +--.....|.|....|++.+       
T Consensus        59 V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT-------  131 (671)
T PF15390_consen   59 VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLT-------  131 (671)
T ss_pred             eeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEe-------
Confidence            3456787653     35666667888888875  2221 1111          11234678999999999886       


Q ss_pred             CCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC
Q 004971          483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE  543 (721)
Q Consensus       483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~  543 (721)
                      .....-++.+..+..    .++.=....+.+....|.+||++|+++-..  .-+-|+||-.
T Consensus       132 ~~dvSV~~sV~~d~s----rVkaDi~~~G~IhCACWT~DG~RLVVAvGS--sLHSyiWd~~  186 (671)
T PF15390_consen  132 ARDVSVLPSVHCDSS----RVKADIKTSGLIHCACWTKDGQRLVVAVGS--SLHSYIWDSA  186 (671)
T ss_pred             cCceeEeeeeeeCCc----eEEEeccCCceEEEEEecCcCCEEEEEeCC--eEEEEEecCc
Confidence            334455666766653    333323444677778999999999988642  3477777754

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=92.59  E-value=19  Score=39.63  Aligned_cols=83  Identities=13%  Similarity=0.162  Sum_probs=43.3

Q ss_pred             ceeEEEEECCCCcccceEECcCCC--------cCc--eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971          534 YKNLYIMDAEGGEGYGLHRLTEGP--------WSD--TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ  603 (721)
Q Consensus       534 ~~~l~~~d~~~g~~~~~~~l~~~~--------~~~--~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  603 (721)
                      ...|+.+|+.+|+.  +-+.....        ...  ..++  -.+..|++.+.++       .||.+|.++|+..--..
T Consensus       365 ~G~l~AlD~~tG~~--~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG-------~l~ald~~tG~~lW~~~  433 (488)
T cd00216         365 KGGLAALDPKTGKV--VWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADG-------YFRAFDATTGKELWKFR  433 (488)
T ss_pred             ceEEEEEeCCCCcE--eeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCC-------eEEEEECCCCceeeEEE
Confidence            45799999999884  22221110        000  1122  2456677766554       89999999997653333


Q ss_pred             cCCCCCcCCeE-ECCCCCEEEEEEecC
Q 004971          604 SGSAGRANHPY-FSPDGKSIVFTSDYG  629 (721)
Q Consensus       604 ~~~~~~~~~~~-~SpDG~~l~~~~~~~  629 (721)
                      . .......|. +..+|+ +|+.....
T Consensus       434 ~-~~~~~a~P~~~~~~g~-~yv~~~~g  458 (488)
T cd00216         434 T-PSGIQATPMTYEVNGK-QYVGVMVG  458 (488)
T ss_pred             C-CCCceEcCEEEEeCCE-EEEEEEec
Confidence            2 222223333 445553 44444433

The alignment model contains an 8-bladed beta-propeller.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.42  E-value=16  Score=38.42  Aligned_cols=189  Identities=12%  Similarity=0.119  Sum_probs=82.1

Q ss_pred             CcCCCEEEEE-------eCCcEEEEECCCCceEEEe------ecCceeeEEcCCCCeEEEEecC------CCCCC-----
Q 004971          427 SPKGDRIAFV-------EFPGVYVVNSDGSNRRQVY------FKNAFSTVWDPVREAVVYTSGG------PEFAS-----  482 (721)
Q Consensus       427 SpDG~~la~~-------~~~~l~v~d~~~g~~~~l~------~~~~~~~~~spdg~~la~~~~~------~~~~~-----  482 (721)
                      -|+|+.++..       ..+.+.++|-++-+.+---      .....++.|.|--+.++.+.-+      ..+..     
T Consensus       138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~  217 (461)
T PF05694_consen  138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA  217 (461)
T ss_dssp             -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred             cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence            4788766665       2467888888765543221      1234578888877776665421      11111     


Q ss_pred             --CCCcEEEEEEEccCCCCccceEEcccCC--CCCcceEE--ccCCCEEEEEEeeCCceeEEEEEC-CCCcc--cceEEC
Q 004971          483 --ESSEVDIISINVDDVDGVSAVRRLTTNG--KNNAFPSV--SPDGKWIVFRSTRTGYKNLYIMDA-EGGEG--YGLHRL  553 (721)
Q Consensus       483 --~~~~~~i~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~--SpDg~~l~~~s~~~g~~~l~~~d~-~~g~~--~~~~~l  553 (721)
                        -...+++|++....     ..+.+.-+.  .....+.|  .|+..+=++...-  ...||+|-. +.++-  +++..+
T Consensus       218 ~~yG~~l~vWD~~~r~-----~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aL--ss~i~~~~k~~~g~W~a~kVi~i  290 (461)
T PF05694_consen  218 GKYGHSLHVWDWSTRK-----LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCAL--SSSIWRFYKDDDGEWAAEKVIDI  290 (461)
T ss_dssp             H-S--EEEEEETTTTE-----EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE----EEEEEEEE-ETTEEEEEEEEEE
T ss_pred             ccccCeEEEEECCCCc-----EeeEEecCCCCCceEEEEecCCCCccceEEEEec--cceEEEEEEcCCCCeeeeEEEEC
Confidence              13456777765432     333343332  23334444  4555554444332  456666644 23321  112222


Q ss_pred             cCC-----------------CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee-c---C-------
Q 004971          554 TEG-----------------PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ-S---G-------  605 (721)
Q Consensus       554 ~~~-----------------~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~-~---~-------  605 (721)
                      ...                 +.-++.+..|.|.++|+++..-.      ..|..||+.....-+++- .   +       
T Consensus       291 p~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~------GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~  364 (461)
T PF05694_consen  291 PAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH------GDVRQYDISDPFNPKLVGQVFLGGSIRKGDH  364 (461)
T ss_dssp             --EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTT------TEEEEEE-SSTTS-EEEEEEE-BTTTT-B--
T ss_pred             CCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccC------CcEEEEecCCCCCCcEEeEEEECcEeccCCC
Confidence            211                 22357889999999999999764      389999997654333321 1   0       


Q ss_pred             -------CCCCcCCeEECCCCCEEEEEEec
Q 004971          606 -------SAGRANHPYFSPDGKSIVFTSDY  628 (721)
Q Consensus       606 -------~~~~~~~~~~SpDG~~l~~~~~~  628 (721)
                             ..+...-+..|-|||+||+++.-
T Consensus       365 ~~v~g~~l~GgPqMvqlS~DGkRlYvTnSL  394 (461)
T PF05694_consen  365 PVVKGKRLRGGPQMVQLSLDGKRLYVTNSL  394 (461)
T ss_dssp             TTS------S----EEE-TTSSEEEEE---
T ss_pred             ccccccccCCCCCeEEEccCCeEEEEEeec
Confidence                   11223567899999999998764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.22  E-value=2  Score=44.52  Aligned_cols=135  Identities=19%  Similarity=0.306  Sum_probs=68.3

Q ss_pred             CcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc-cceEECc----CCCcCceeeEEccC---CCEEEEEEcc--CCCC
Q 004971          513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG-YGLHRLT----EGPWSDTMCNWSPD---GEWIAFASDR--DNPG  582 (721)
Q Consensus       513 ~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~-~~~~~l~----~~~~~~~~~~~SpD---G~~l~~~~~~--~~~~  582 (721)
                      ...++|.|||+.++ +. +  ...|++++.+ +.. ..+..+.    .+......++++|+   ..+|++....  ....
T Consensus         4 P~~~a~~pdG~l~v-~e-~--~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~   78 (331)
T PF07995_consen    4 PRSMAFLPDGRLLV-AE-R--SGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG   78 (331)
T ss_dssp             EEEEEEETTSCEEE-EE-T--TTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred             ceEEEEeCCCcEEE-Ee-C--CceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence            45689999997654 33 2  5789999843 432 2233332    22334567888885   3455554442  1111


Q ss_pred             CCceeEEEEecCCC-----ceEEeeec-CC----CCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEE
Q 004971          583 SGSFEMYLIHPNGT-----GLRKLIQS-GS----AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK  652 (721)
Q Consensus       583 ~~~~~i~~~d~~~~-----~~~~l~~~-~~----~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d  652 (721)
                      .....|.++....+     ..+.+... ..    ......+.|.||| +|+++..+.+.. +..  .......+.|.+++
T Consensus        79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~-~~~--~~~~~~~G~ilri~  154 (331)
T PF07995_consen   79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGND-DNA--QDPNSLRGKILRID  154 (331)
T ss_dssp             SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTG-GGG--CSTTSSTTEEEEEE
T ss_pred             CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCc-ccc--cccccccceEEEec
Confidence            23457887777554     12222211 11    1223458999999 666666555431 000  01122356788888


Q ss_pred             cCCC
Q 004971          653 LDGS  656 (721)
Q Consensus       653 ~~~~  656 (721)
                      .+++
T Consensus       155 ~dG~  158 (331)
T PF07995_consen  155 PDGS  158 (331)
T ss_dssp             TTSS
T ss_pred             ccCc
Confidence            8765

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=92.20  E-value=2.7  Score=48.06  Aligned_cols=127  Identities=16%  Similarity=0.204  Sum_probs=72.8

Q ss_pred             CcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCC-------EEEEEEeeCCceeEEEEECCCCcccceEECcC--
Q 004971          485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGK-------WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE--  555 (721)
Q Consensus       485 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~-------~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~--  555 (721)
                      ..-.||.+|+..+   ..+..+..+. ...-..+.|+.|       ..++.-+   ...|++||+.-...+ +..-..  
T Consensus       502 ~~~~ly~mDLe~G---KVV~eW~~~~-~~~v~~~~p~~K~aqlt~e~tflGls---~n~lfriDpR~~~~k-~v~~~~k~  573 (794)
T PF08553_consen  502 NPNKLYKMDLERG---KVVEEWKVHD-DIPVVDIAPDSKFAQLTNEQTFLGLS---DNSLFRIDPRLSGNK-LVDSQSKQ  573 (794)
T ss_pred             CCCceEEEecCCC---cEEEEeecCC-CcceeEecccccccccCCCceEEEEC---CCceEEeccCCCCCc-eeeccccc
Confidence            4557888888765   2333343333 111234555433       1122222   578999998743211 111111  


Q ss_pred             --CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEec
Q 004971          556 --GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY  628 (721)
Q Consensus       556 --~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~  628 (721)
                        .......++-+.+| +||+++..+       .|.+||--+...+.+++ +.+..+.++..|.||+||+.+...
T Consensus       574 Y~~~~~Fs~~aTt~~G-~iavgs~~G-------~IRLyd~~g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc~t  639 (794)
T PF08553_consen  574 YSSKNNFSCFATTEDG-YIAVGSNKG-------DIRLYDRLGKRAKTALP-GLGDPIIGIDVTADGKWILATCKT  639 (794)
T ss_pred             cccCCCceEEEecCCc-eEEEEeCCC-------cEEeecccchhhhhcCC-CCCCCeeEEEecCCCcEEEEeecc
Confidence              11112345556666 589999886       89999865544444443 246678899999999999876654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.07  E-value=6.7  Score=40.67  Aligned_cols=166  Identities=16%  Similarity=0.192  Sum_probs=79.9

Q ss_pred             CCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe---------ecCceeeEEcCC---CCeEEEEecCCCCCCCCCcEEE
Q 004971          422 SFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY---------FKNAFSTVWDPV---REAVVYTSGGPEFASESSEVDI  489 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~---------~~~~~~~~~spd---g~~la~~~~~~~~~~~~~~~~i  489 (721)
                      ..++|.|||+.++....+.|++++.++.....+.         ......+++.|+   ..+|++...............|
T Consensus         5 ~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v   84 (331)
T PF07995_consen    5 RSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRV   84 (331)
T ss_dssp             EEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEE
T ss_pred             eEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcceee
Confidence            3478999997666556889999994443323332         234467888884   3455544321101112334556


Q ss_pred             EEEEccCCC-CccceEEc----cc---CCCCCcceEEccCCCEEEEEEeeC-----------CceeEEEEECCCCccc--
Q 004971          490 ISINVDDVD-GVSAVRRL----TT---NGKNNAFPSVSPDGKWIVFRSTRT-----------GYKNLYIMDAEGGEGY--  548 (721)
Q Consensus       490 ~~~~~~~~~-~~~~~~~l----~~---~~~~~~~~~~SpDg~~l~~~s~~~-----------g~~~l~~~d~~~g~~~--  548 (721)
                      .++...... .....+.+    ..   .......++|.||| +|++.....           ....|.+++.++.-+.  
T Consensus        85 ~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dn  163 (331)
T PF07995_consen   85 VRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADN  163 (331)
T ss_dssp             EEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTS
T ss_pred             EEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccCcCCCCC
Confidence            666554320 01111222    22   11233458999999 566554322           1347888987643100  


Q ss_pred             --------ceEECcCCCcCceeeEEccC-CCEEEEEEccCCCCCCceeEEEEe
Q 004971          549 --------GLHRLTEGPWSDTMCNWSPD-GEWIAFASDRDNPGSGSFEMYLIH  592 (721)
Q Consensus       549 --------~~~~l~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~~~~i~~~d  592 (721)
                              .......+-.....++|.|. |+ |+......   .....|.+..
T Consensus       164 P~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~-l~~~d~G~---~~~dein~i~  212 (331)
T PF07995_consen  164 PFVGDDGADSEIYAYGLRNPFGLAFDPNTGR-LWAADNGP---DGWDEINRIE  212 (331)
T ss_dssp             TTTTSTTSTTTEEEE--SEEEEEEEETTTTE-EEEEEE-S---SSSEEEEEE-
T ss_pred             ccccCCCceEEEEEeCCCccccEEEECCCCc-EEEEccCC---CCCcEEEEec
Confidence                    01111222233467899998 55 44444322   1334555553

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=91.90  E-value=17  Score=39.11  Aligned_cols=107  Identities=16%  Similarity=0.120  Sum_probs=55.4

Q ss_pred             CCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe----------ecCceeeEEcCCC------CeEEEEecCCCCCCC
Q 004971          421 GSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY----------FKNAFSTVWDPVR------EAVVYTSGGPEFASE  483 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~----------~~~~~~~~~spdg------~~la~~~~~~~~~~~  483 (721)
                      ...++|.|||+.|+.-. .+.|++++..++....+.          .+....++++||=      ++|++......-...
T Consensus        32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~  111 (454)
T TIGR03606        32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKE  111 (454)
T ss_pred             ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCC
Confidence            34578999996555545 589999987665433221          2345678888874      345554311100000


Q ss_pred             -CCcEEEEEEEccCC--CCccceEEcccCC----CCCcceEEccCCCEEEEE
Q 004971          484 -SSEVDIISINVDDV--DGVSAVRRLTTNG----KNNAFPSVSPDGKWIVFR  528 (721)
Q Consensus       484 -~~~~~i~~~~~~~~--~~~~~~~~l~~~~----~~~~~~~~SpDg~~l~~~  528 (721)
                       .....|.++..+..  ........+....    ..-..++|.|||+ |++.
T Consensus       112 ~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs  162 (454)
T TIGR03606       112 LPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYT  162 (454)
T ss_pred             ccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEE
Confidence             02446666654321  0001112222211    2344588999997 5543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=91.76  E-value=15  Score=36.71  Aligned_cols=151  Identities=16%  Similarity=0.184  Sum_probs=87.5

Q ss_pred             CCCEEEEEeCCcEEEEEC-CCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccc----
Q 004971          429 KGDRIAFVEFPGVYVVNS-DGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA----  502 (721)
Q Consensus       429 DG~~la~~~~~~l~v~d~-~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----  502 (721)
                      .+++|++....+||++++ .......+. ...+..+...|+-+.|++.+        ++.+.++.++.-.......    
T Consensus         6 ~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs--------d~~l~~~~L~~l~~~~~~~~~~~   77 (275)
T PF00780_consen    6 WGDRLLVGTEDGLYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS--------DGQLYVYDLDSLEPVSTSAPLAF   77 (275)
T ss_pred             CCCEEEEEECCCEEEEEecCCccceeEeecceEEEEEEecccCEEEEEc--------CCccEEEEchhhccccccccccc
Confidence            477888887778999999 444455544 44588888889888888876        3667777665432100000    


Q ss_pred             ------eEEcccCCCCCcceE---EccCCCEEEEEEeeCCceeEEEEECCC--Ccc-cceEECcCCCcCceeeEEccCCC
Q 004971          503 ------VRRLTTNGKNNAFPS---VSPDGKWIVFRSTRTGYKNLYIMDAEG--GEG-YGLHRLTEGPWSDTMCNWSPDGE  570 (721)
Q Consensus       503 ------~~~l~~~~~~~~~~~---~SpDg~~l~~~s~~~g~~~l~~~d~~~--g~~-~~~~~l~~~~~~~~~~~~SpDG~  570 (721)
                            ...+.... ....++   -...+.+|+++..    .+|.++....  .+. +..+.+.-. .....+.|.  ++
T Consensus        78 ~~~~~~~~~~~~~~-~v~~f~~~~~~~~~~~L~va~k----k~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~  149 (275)
T PF00780_consen   78 PKSRSLPTKLPETK-GVSFFAVNGGHEGSRRLCVAVK----KKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GN  149 (275)
T ss_pred             cccccccccccccC-CeeEEeeccccccceEEEEEEC----CEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CC
Confidence                  00111111 122222   2234445555553    3455544433  222 224444432 344678888  56


Q ss_pred             EEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971          571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ  603 (721)
Q Consensus       571 ~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  603 (721)
                      .|+++..+        ..+++|+.++....+..
T Consensus       150 ~i~v~~~~--------~f~~idl~~~~~~~l~~  174 (275)
T PF00780_consen  150 KICVGTSK--------GFYLIDLNTGSPSELLD  174 (275)
T ss_pred             EEEEEeCC--------ceEEEecCCCCceEEeC
Confidence            78888765        68999999888877764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=91.70  E-value=2.1  Score=44.75  Aligned_cols=129  Identities=12%  Similarity=0.006  Sum_probs=59.9

Q ss_pred             CcEEEEECCCCceEEEe-e----cCceeeEE--cCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC--
Q 004971          439 PGVYVVNSDGSNRRQVY-F----KNAFSTVW--DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN--  509 (721)
Q Consensus       439 ~~l~v~d~~~g~~~~l~-~----~~~~~~~~--spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~--  509 (721)
                      ..|.+||+...+..+.. -    ..+..+.|  .|+..+-++.+.      -..++.+|.-+.++.  ....+.++-.  
T Consensus       222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a------Lss~i~~~~k~~~g~--W~a~kVi~ip~~  293 (461)
T PF05694_consen  222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA------LSSSIWRFYKDDDGE--WAAEKVIDIPAK  293 (461)
T ss_dssp             -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--------EEEEEEEE-ETTE--EEEEEEEEE--E
T ss_pred             CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe------ccceEEEEEEcCCCC--eeeeEEEECCCc
Confidence            46888999888865544 1    12334444  555655555542      223343333322221  1111111111  


Q ss_pred             -----------------CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCc-ccceEECcCC---------------
Q 004971          510 -----------------GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE-GYGLHRLTEG---------------  556 (721)
Q Consensus       510 -----------------~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~-~~~~~~l~~~---------------  556 (721)
                                       ...+..+.+|.|.|+|++....  ...|+.||+..-. ++.+.++.-+               
T Consensus       294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~--~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~  371 (461)
T PF05694_consen  294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWL--HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKR  371 (461)
T ss_dssp             E--SS---GGGGGG-EE------EEE-TTS-EEEEEETT--TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS----
T ss_pred             ccCcccccccccccccCCCceEeEEEccCCCEEEEEccc--CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccc
Confidence                             1234667899999999999875  4568888887532 2223222211               


Q ss_pred             -CcCceeeEEccCCCEEEEEEc
Q 004971          557 -PWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       557 -~~~~~~~~~SpDG~~l~~~~~  577 (721)
                       .+....+..|-||++|+++..
T Consensus       372 l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  372 LRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             --S----EEE-TTSSEEEEE--
T ss_pred             cCCCCCeEEEccCCeEEEEEee
Confidence             112356789999999999875

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=91.64  E-value=22  Score=38.15  Aligned_cols=32  Identities=19%  Similarity=0.351  Sum_probs=24.4

Q ss_pred             cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971          558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       558 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                      ..+..++.||+|+.||+....+       .+++++.+-.
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g-------~l~v~ssDf~  248 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSG-------NLWVVSSDFS  248 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCC-------CEEEEECccc
Confidence            3467899999999999988764       6777665443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=91.40  E-value=19  Score=41.93  Aligned_cols=202  Identities=14%  Similarity=0.057  Sum_probs=113.8

Q ss_pred             CCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe------ecCceeeEEc-CCCCeEEEEecCCCCCCCCCcEEEEEEE
Q 004971          422 SFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY------FKNAFSTVWD-PVREAVVYTSGGPEFASESSEVDIISIN  493 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~------~~~~~~~~~s-pdg~~la~~~~~~~~~~~~~~~~i~~~~  493 (721)
                      ..+.++|=...|+... +..|.+||-..++.-.-+      ...+..+.+- .+...|..+.      ..++.++||+--
T Consensus      1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLta------s~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTA------SSDGVIRIWKDY 1141 (1387)
T ss_pred             ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeee------ccCceEEEeccc
Confidence            3456677666777775 778999998766542222      2244555443 3344444443      367899999765


Q ss_pred             ccCCCCccceEEcccC----------CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCc-Ccee
Q 004971          494 VDDVDGVSAVRRLTTN----------GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW-SDTM  562 (721)
Q Consensus       494 ~~~~~~~~~~~~l~~~----------~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~-~~~~  562 (721)
                      ....   .+.+-++.-          .+...-..|-....+|++..+   -..|.+||......  ...+..+.. .++.
T Consensus      1142 ~~~~---~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd---~r~IRIWDa~~E~~--~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1142 ADKW---KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD---VRSIRIWDAHKEQV--VADIPYGSSTLVTA 1213 (1387)
T ss_pred             cccc---CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC---eeEEEEEeccccee--EeecccCCCcccee
Confidence            4431   122222211          112233567776667776665   67899999986543  555554322 2233


Q ss_pred             eEEc-cCCCEEEEEEccCCCCCCceeEEEEecCCCce---EEeeecCCCCC--cCCeEECCCCCE-EEEEEecCCCcCCC
Q 004971          563 CNWS-PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL---RKLIQSGSAGR--ANHPYFSPDGKS-IVFTSDYGGISAEP  635 (721)
Q Consensus       563 ~~~S-pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~---~~l~~~~~~~~--~~~~~~SpDG~~-l~~~~~~~~~~~~~  635 (721)
                      ++-+ +.|..|+.+..++       .|.+||......   ...... |...  +.++.+-+.|-. |+..+.++      
T Consensus      1214 LS~~~~~gn~i~AGfaDG-------svRvyD~R~a~~ds~v~~~R~-h~~~~~Iv~~slq~~G~~elvSgs~~G------ 1279 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADG-------SVRVYDRRMAPPDSLVCVYRE-HNDVEPIVHLSLQRQGLGELVSGSQDG------ 1279 (1387)
T ss_pred             ecccccCCceEEEeecCC-------ceEEeecccCCccccceeecc-cCCcccceeEEeecCCCcceeeeccCC------
Confidence            3222 2368888888875       788888654332   222222 3333  667777776633 66555544      


Q ss_pred             CCCCCCCCCCccEEEEEcCC-CCeEEec
Q 004971          636 ISTPHQYQPYGEIFKIKLDG-SDLKRLT  662 (721)
Q Consensus       636 ~~~~~~~~~~~~l~~~d~~~-~~~~~lt  662 (721)
                                 +|+.+|+.. .....++
T Consensus      1280 -----------~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1280 -----------DIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred             -----------eEEEEecccCcccccce
Confidence                       599999877 3333333

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=91.38  E-value=3.2  Score=47.50  Aligned_cols=64  Identities=20%  Similarity=0.255  Sum_probs=43.9

Q ss_pred             eEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971          516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       516 ~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                      .+-+.+| +||+++.   .+.|++||--+...  -+.+..-...+.++..+.||+||+.+...        .|.+++.
T Consensus       583 ~aTt~~G-~iavgs~---~G~IRLyd~~g~~A--KT~lp~lG~pI~~iDvt~DGkwilaTc~t--------yLlLi~t  646 (794)
T PF08553_consen  583 FATTEDG-YIAVGSN---KGDIRLYDRLGKRA--KTALPGLGDPIIGIDVTADGKWILATCKT--------YLLLIDT  646 (794)
T ss_pred             EEecCCc-eEEEEeC---CCcEEeecccchhh--hhcCCCCCCCeeEEEecCCCcEEEEeecc--------eEEEEEE
Confidence            4455555 5888887   77899998654331  22333334567899999999999988865        5777764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.69  E-value=35  Score=38.83  Aligned_cols=223  Identities=15%  Similarity=0.101  Sum_probs=115.8

Q ss_pred             cEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC-CcceecccCCCCceeCcCCCEEEE-Ee-----CC-cEEEEEC
Q 004971          375 PFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAF-VE-----FP-GVYVVNS  446 (721)
Q Consensus       375 ~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~-~~-----~~-~l~v~d~  446 (721)
                      -.|++.+..|++....+.         ++..+-.-.. ..+.....+....-|.-+++.+.+ ++     +. -|.+|++
T Consensus        29 sc~~s~~~~vvigt~~G~---------V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~l   99 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGR---------VVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDL   99 (933)
T ss_pred             eEEcCCCceEEEeecccc---------EEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecc
Confidence            468888888888777665         2222211111 111111111111223444433333 31     22 5788887


Q ss_pred             CC---Cc-eEE-----Ee-------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC
Q 004971          447 DG---SN-RRQ-----VY-------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG  510 (721)
Q Consensus       447 ~~---g~-~~~-----l~-------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~  510 (721)
                      +-   ++ +.-     +.       ......++.|.|-+.+++.-       .++.+.++.-|.-.. -.....-...+.
T Consensus       100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf-------~nG~V~~~~GDi~RD-rgsr~~~~~~~~  171 (933)
T KOG2114|consen  100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGF-------TNGLVICYKGDILRD-RGSRQDYSHRGK  171 (933)
T ss_pred             cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEe-------cCcEEEEEcCcchhc-cccceeeeccCC
Confidence            53   22 221     22       12345678888877777764       456676665543221 001222223344


Q ss_pred             CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEE
Q 004971          511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL  590 (721)
Q Consensus       511 ~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~  590 (721)
                      ..+..+++--|++.++|+..   ..++..+.+.+..+ ....+..+.....--++++-...++++...        .||.
T Consensus       172 ~pITgL~~~~d~~s~lFv~T---t~~V~~y~l~gr~p-~~~~ld~~G~~lnCss~~~~t~qfIca~~e--------~l~f  239 (933)
T KOG2114|consen  172 EPITGLALRSDGKSVLFVAT---TEQVMLYSLSGRTP-SLKVLDNNGISLNCSSFSDGTYQFICAGSE--------FLYF  239 (933)
T ss_pred             CCceeeEEecCCceeEEEEe---cceeEEEEecCCCc-ceeeeccCCccceeeecCCCCccEEEecCc--------eEEE
Confidence            67889999999999777765   55666776663331 133355554444555666544447777665        7999


Q ss_pred             EecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       591 ~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      |+.++.+.. .+-.  -+.-...-|..-|-.|++....+
T Consensus       240 Y~sd~~~~c-faf~--~g~kk~~~~~~~g~~L~v~~~~~  275 (933)
T KOG2114|consen  240 YDSDGRGPC-FAFE--VGEKKEMLVFSFGLLLCVTTDKG  275 (933)
T ss_pred             EcCCCccee-eeec--CCCeEEEEEEecCEEEEEEccCC
Confidence            998764432 2221  12222233443455555544443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=90.67  E-value=8.3  Score=43.35  Aligned_cols=103  Identities=15%  Similarity=0.122  Sum_probs=61.8

Q ss_pred             cceeccCCeEEE-Ee-ccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeee
Q 004971          271 WPCWVDESTLFF-HR-KSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRH  348 (721)
Q Consensus       271 ~~~ws~dg~l~~-~~-~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~  348 (721)
                      ..+|+|-.-++. +. ...+.|.+.|| .+   .+       ++.+--..+..+.+++|.| .. .+.+.    |-..+.
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIf-ad---tG-------EPqr~Vt~P~hatSLCWHp-e~-~vLa~----gwe~g~   82 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIF-AD---TG-------EPQRDVTYPVHATSLCWHP-EE-FVLAQ----GWEMGV   82 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEE-ec---CC-------CCCcccccceehhhhccCh-HH-HHHhh----ccccce
Confidence            347888754322 11 34557888888 32   22       3444333455667899999 44 23332    223445


Q ss_pred             EEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971          349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG  392 (721)
Q Consensus       349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~  392 (721)
                      +.+|...+.+...+.  ..+...+..+.|||+|..++.....+.
T Consensus        83 ~~v~~~~~~e~htv~--~th~a~i~~l~wS~~G~~l~t~d~~g~  124 (1416)
T KOG3617|consen   83 SDVQKTNTTETHTVV--ETHPAPIQGLDWSHDGTVLMTLDNPGS  124 (1416)
T ss_pred             eEEEecCCceeeeec--cCCCCCceeEEecCCCCeEEEcCCCce
Confidence            778877666544333  456777888999999999987544433

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=90.54  E-value=0.25  Score=54.91  Aligned_cols=212  Identities=12%  Similarity=0.081  Sum_probs=111.5

Q ss_pred             cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC--CCcceecccCCCCceeCcCCCEEEEE---eCCc
Q 004971          366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP--LPDISLFRFDGSFPSFSPKGDRIAFV---EFPG  440 (721)
Q Consensus       366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~SpDG~~la~~---~~~~  440 (721)
                      ..+.....+.+||.+.++|++....+.         +.+.+..++  .....-.......+.-|.||+.+...   +...
T Consensus      1098 rd~~~~fTc~afs~~~~hL~vG~~~Ge---------ik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGE---------IKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             hccccceeeEEeecCCceEEeeeccce---------EEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence            334555678899999999999877766         333333333  22222222223345567788876665   2334


Q ss_pred             EEEEECCC-CceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC---CCCcce
Q 004971          441 VYVVNSDG-SNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG---KNNAFP  516 (721)
Q Consensus       441 l~v~d~~~-g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~---~~~~~~  516 (721)
                      ..+|++.. +..+.-+ .....+.||..-+.-++.+       ......||++.....    ..+.++...   ......
T Consensus      1169 saLW~~~s~~~~~Hsf-~ed~~vkFsn~~q~r~~gt-------~~d~a~~YDvqT~~~----l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSF-DEDKAVKFSNSLQFRALGT-------EADDALLYDVQTCSP----LQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred             HHHhccccccCccccc-cccceeehhhhHHHHHhcc-------cccceEEEecccCcH----HHHhcCcchhhhhhcccc
Confidence            45566542 2222222 2233455555433333332       346778888877542    222233322   334567


Q ss_pred             EEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971          517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                      .|||+.+.|+.-        =.+||+...+.  +.....-. ....-.|.|.|..+++-+.            +||+.+-
T Consensus      1237 ~FsP~D~LIlnd--------GvLWDvR~~~a--Ih~FD~ft-~~~~G~FHP~g~eVIINSE------------IwD~RTF 1293 (1516)
T KOG1832|consen 1237 HFSPCDTLILND--------GVLWDVRIPEA--IHRFDQFT-DYGGGGFHPSGNEVIINSE------------IWDMRTF 1293 (1516)
T ss_pred             ccCCCcceEeeC--------ceeeeeccHHH--Hhhhhhhe-ecccccccCCCceEEeech------------hhhhHHH
Confidence            899998866522        13678765442  33332221 1234478999998876553            4565553


Q ss_pred             ceEEeeecCCCCCcCCeEECCCCCEEEE
Q 004971          597 GLRKLIQSGSAGRANHPYFSPDGKSIVF  624 (721)
Q Consensus       597 ~~~~l~~~~~~~~~~~~~~SpDG~~l~~  624 (721)
                      +...-.   ..-..+.+.|...|..+|-
T Consensus      1294 ~lLh~V---P~Ldqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1294 KLLHSV---PSLDQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred             HHHhcC---ccccceEEEeccCccchhh
Confidence            221111   1223345667767765543

>PHA03098 kelch-like protein; Provisional

Probab=90.44  E-value=16  Score=40.89  Aligned_cols=114  Identities=12%  Similarity=-0.053  Sum_probs=56.3

Q ss_pred             eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCC-CCCceeEEEEecCCCceEEeeecCCCCCcCCe
Q 004971          535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP-GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHP  613 (721)
Q Consensus       535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~-~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~  613 (721)
                      ..++++|+.+++-..+..+.....  ...+..-+++..+++...... ......+++||..+++-..+..... ......
T Consensus       406 ~~v~~yd~~t~~W~~~~~~p~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~  482 (534)
T PHA03098        406 KTVECFSLNTNKWSKGSPLPISHY--GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF-PRINAS  482 (534)
T ss_pred             ceEEEEeCCCCeeeecCCCCcccc--CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc-ccccce
Confidence            578999998876322222221111  122333455533443322100 0012359999999887666543211 112222


Q ss_pred             EECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       614 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      ...-+++.+++.+.....            ....+++||+++.+...+..
T Consensus       483 ~~~~~~~iyv~GG~~~~~------------~~~~v~~yd~~~~~W~~~~~  520 (534)
T PHA03098        483 LCIFNNKIYVVGGDKYEY------------YINEIEVYDDKTNTWTLFCK  520 (534)
T ss_pred             EEEECCEEEEEcCCcCCc------------ccceeEEEeCCCCEEEecCC
Confidence            222355544443332211            02369999999888777765

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=90.12  E-value=3.7  Score=45.21  Aligned_cols=39  Identities=21%  Similarity=0.549  Sum_probs=28.9

Q ss_pred             EEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971          588 MYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS  626 (721)
Q Consensus       588 i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~  626 (721)
                      +...+...++.+++........+..+.|+|||+.|++.-
T Consensus       482 ~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~tlFvni  520 (524)
T PF05787_consen  482 VWAYDPDTGELKRFLVGPNGAEITGPCFSPDGRTLFVNI  520 (524)
T ss_pred             eeeccccccceeeeccCCCCcccccceECCCCCEEEEEE
Confidence            344566777777776554667789999999999987644

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.00  E-value=4.7  Score=42.82  Aligned_cols=139  Identities=16%  Similarity=0.121  Sum_probs=75.8

Q ss_pred             CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC---CC
Q 004971          438 FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG---KN  512 (721)
Q Consensus       438 ~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~---~~  512 (721)
                      ...|+.+|++.|+...--  ...+....+.||.+.-=+.+.....-..+..+.-|+....+.   ..+.....+.   ..
T Consensus       355 ~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~---~kl~~~q~kqy~~k~  431 (644)
T KOG2395|consen  355 QDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK---NKLAVVQSKQYSTKN  431 (644)
T ss_pred             cCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc---ceeeeeecccccccc
Confidence            567999999998753322  334666777777664433322111112233343343333332   0111111111   22


Q ss_pred             Ccc-eEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEE
Q 004971          513 NAF-PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI  591 (721)
Q Consensus       513 ~~~-~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~  591 (721)
                      ... .+-.-+ -+|++++.   ...|.+||--....  -+.++.-...+.++..+.||+||+.+...        .|.++
T Consensus       432 nFsc~aTT~s-G~IvvgS~---~GdIRLYdri~~~A--KTAlPgLG~~I~hVdvtadGKwil~Tc~t--------yLlLi  497 (644)
T KOG2395|consen  432 NFSCFATTES-GYIVVGSL---KGDIRLYDRIGRRA--KTALPGLGDAIKHVDVTADGKWILATCKT--------YLLLI  497 (644)
T ss_pred             ccceeeecCC-ceEEEeec---CCcEEeehhhhhhh--hhcccccCCceeeEEeeccCcEEEEeccc--------EEEEE
Confidence            222 233334 46888887   67899998743331  22344434567889999999999988764        56666


Q ss_pred             ec
Q 004971          592 HP  593 (721)
Q Consensus       592 d~  593 (721)
                      ++
T Consensus       498 ~t  499 (644)
T KOG2395|consen  498 DT  499 (644)
T ss_pred             EE
Confidence            65

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.86  E-value=9.6  Score=42.68  Aligned_cols=159  Identities=19%  Similarity=0.189  Sum_probs=90.4

Q ss_pred             CCEEEEEe-CCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc
Q 004971          430 GDRIAFVE-FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT  508 (721)
Q Consensus       430 G~~la~~~-~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~  508 (721)
                      ++.+++.. .+.+++++..+.. +........    .-+|.+++.++       .++++.|..+..+.     ....+.-
T Consensus        49 ~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~----~~~Gey~asCS-------~DGkv~I~sl~~~~-----~~~~~df  111 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS----ILEGEYVASCS-------DDGKVVIGSLFTDD-----EITQYDF  111 (846)
T ss_pred             cceeeeccccceEEEEecCCcc-ccccccccc----ccCCceEEEec-------CCCcEEEeeccCCc-----cceeEec
Confidence            56777775 5688888876653 222211111    45788888886       56777777665543     2222222


Q ss_pred             CCCCCcceEEccC-----CCEEEEEEeeCCceeEEEEEC--CCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCC
Q 004971          509 NGKNNAFPSVSPD-----GKWIVFRSTRTGYKNLYIMDA--EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP  581 (721)
Q Consensus       509 ~~~~~~~~~~SpD-----g~~l~~~s~~~g~~~l~~~d~--~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~  581 (721)
                      . ......+++||     .++++....    ..|+++.-  -+...  ...+..+.+.+..+.|-  |..||++.+.   
T Consensus       112 ~-rpiksial~Pd~~~~~sk~fv~GG~----aglvL~er~wlgnk~--~v~l~~~eG~I~~i~W~--g~lIAWand~---  179 (846)
T KOG2066|consen  112 K-RPIKSIALHPDFSRQQSKQFVSGGM----AGLVLSERNWLGNKD--SVVLSEGEGPIHSIKWR--GNLIAWANDD---  179 (846)
T ss_pred             C-CcceeEEeccchhhhhhhheeecCc----ceEEEehhhhhcCcc--ceeeecCccceEEEEec--CcEEEEecCC---
Confidence            2 25566788888     444544443    22655432  12221  22455667777888885  8899999987   


Q ss_pred             CCCceeEEEEecCCCceEEeeecCC-----CCCcCCeEECCCCCEE
Q 004971          582 GSGSFEMYLIHPNGTGLRKLIQSGS-----AGRANHPYFSPDGKSI  622 (721)
Q Consensus       582 ~~~~~~i~~~d~~~~~~~~l~~~~~-----~~~~~~~~~SpDG~~l  622 (721)
                           .+.+||+..++.....+..+     .-...+..|.++.+.+
T Consensus       180 -----Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV  220 (846)
T KOG2066|consen  180 -----GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV  220 (846)
T ss_pred             -----CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE
Confidence                 48889987764332222111     1123457788765543

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=89.63  E-value=12  Score=38.54  Aligned_cols=207  Identities=17%  Similarity=0.253  Sum_probs=102.7

Q ss_pred             CcEEEEECCCCceEEEe--e----cCceeeEEcCCCCeEEEEecCCCCCCC-----CCcEEEEEEEccCCCCccceEEcc
Q 004971          439 PGVYVVNSDGSNRRQVY--F----KNAFSTVWDPVREAVVYTSGGPEFASE-----SSEVDIISINVDDVDGVSAVRRLT  507 (721)
Q Consensus       439 ~~l~v~d~~~g~~~~l~--~----~~~~~~~~spdg~~la~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~l~  507 (721)
                      +.||.|++...+.+.+.  .    ....+++.-|.+...+|..   .+..-     ...-.+|.+++.+.    +..+|.
T Consensus        98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG---EfaSPnq~qF~HYkD~W~fd~~tr----kweql~  170 (521)
T KOG1230|consen   98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG---EFASPNQEQFHHYKDLWLFDLKTR----KWEQLE  170 (521)
T ss_pred             eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc---ccCCcchhhhhhhhheeeeeeccc----hheeec
Confidence            46888887777766554  1    1122334445553333332   11111     12345677776553    445554


Q ss_pred             cCCC---C--CcceEEccCCCEEEEEEeeCC------ceeEEEEECCCCcccceEECcCCC--cCceeeEEccCCCEEEE
Q 004971          508 TNGK---N--NAFPSVSPDGKWIVFRSTRTG------YKNLYIMDAEGGEGYGLHRLTEGP--WSDTMCNWSPDGEWIAF  574 (721)
Q Consensus       508 ~~~~---~--~~~~~~SpDg~~l~~~s~~~g------~~~l~~~d~~~g~~~~~~~l~~~~--~~~~~~~~SpDG~~l~~  574 (721)
                      ..++   +  ..-.+|-  .+.|+|....+.      .++||++|+++-+-..+..-...+  ..-..++.+|+|..+++
T Consensus       171 ~~g~PS~RSGHRMvawK--~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vy  248 (521)
T KOG1230|consen  171 FGGGPSPRSGHRMVAWK--RQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVY  248 (521)
T ss_pred             cCCCCCCCccceeEEee--eeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEE
Confidence            4331   1  1113332  355666654432      357999999976532222211011  11245677899998888


Q ss_pred             EEccCCC-------CCCceeEEEEecCCCc-----eEEeeecC---CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCC
Q 004971          575 ASDRDNP-------GSGSFEMYLIHPNGTG-----LRKLIQSG---SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTP  639 (721)
Q Consensus       575 ~~~~~~~-------~~~~~~i~~~d~~~~~-----~~~l~~~~---~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~  639 (721)
                      +......       +-...++|+.+...+.     -.++-..+   ....-.+++..++++.|+|..--+-- .+..  .
T Consensus       249 GGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~e-eeeE--s  325 (521)
T KOG1230|consen  249 GGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLE-EEEE--S  325 (521)
T ss_pred             cchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceeccc-ccch--h
Confidence            7642110       1234567777776642     11221111   22233467788999999987643310 0000  1


Q ss_pred             CCCCCCccEEEEEcCCCC
Q 004971          640 HQYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       640 ~~~~~~~~l~~~d~~~~~  657 (721)
                      .+-..+.+||.+|++..+
T Consensus       326 l~g~F~NDLy~fdlt~nr  343 (521)
T KOG1230|consen  326 LSGEFFNDLYFFDLTRNR  343 (521)
T ss_pred             hhhhhhhhhhheecccch
Confidence            111224579999986543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=88.54  E-value=30  Score=34.96  Aligned_cols=96  Identities=9%  Similarity=0.196  Sum_probs=61.3

Q ss_pred             EEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec
Q 004971          525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS  604 (721)
Q Consensus       525 l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~  604 (721)
                      .+|.....+...+..+..+.-.  .+..+-.+...+..+.|.|-.+.|.++..+.       .+-+||+.+++-+.....
T Consensus       167 ~~fvGd~~gqvt~lr~~~~~~~--~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~-------~vi~wdigg~~g~~~el~  237 (404)
T KOG1409|consen  167 YAFVGDHSGQITMLKLEQNGCQ--LITTFNGHTGEVTCLKWDPGQRLLFSGASDH-------SVIMWDIGGRKGTAYELQ  237 (404)
T ss_pred             EEEecccccceEEEEEeecCCc--eEEEEcCcccceEEEEEcCCCcEEEeccccC-------ceEEEeccCCcceeeeec
Confidence            4455554444455555554433  2666667777788899999877776666664       799999988776666555


Q ss_pred             CCCCCcCCeEECCCCCEEEEEEecC
Q 004971          605 GSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       605 ~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      ++...+..+...+--+.|.....++
T Consensus       238 gh~~kV~~l~~~~~t~~l~S~~edg  262 (404)
T KOG1409|consen  238 GHNDKVQALSYAQHTRQLISCGEDG  262 (404)
T ss_pred             cchhhhhhhhhhhhheeeeeccCCC
Confidence            5666666665555455555544444

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=88.19  E-value=24  Score=38.41  Aligned_cols=153  Identities=9%  Similarity=0.128  Sum_probs=83.8

Q ss_pred             CCCceeCcCCCEEEEEeCCcEEEEEC--CCCceEEEe-ecCceeeEEcCCC-----CeEEEEecCCCCCCCCCcEEEEEE
Q 004971          421 GSFPSFSPKGDRIAFVEFPGVYVVNS--DGSNRRQVY-FKNAFSTVWDPVR-----EAVVYTSGGPEFASESSEVDIISI  492 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~~~~~l~v~d~--~~g~~~~l~-~~~~~~~~~spdg-----~~la~~~~~~~~~~~~~~~~i~~~  492 (721)
                      ...++|. ||+.++..   .|+..+-  .-|..+.|. -..+..+.|+|-+     ..||+.        ....+.+|.+
T Consensus        22 vhGlaWT-DGkqVvLT---~L~l~~gE~kfGds~viGqFEhV~GlsW~P~~~~~~paLLAVQ--------HkkhVtVWqL   89 (671)
T PF15390_consen   22 VHGLAWT-DGKQVVLT---DLQLHNGEPKFGDSKVIGQFEHVHGLSWAPPCTADTPALLAVQ--------HKKHVTVWQL   89 (671)
T ss_pred             ccceEec-CCCEEEEE---eeeeeCCccccCCccEeeccceeeeeeecCcccCCCCceEEEe--------ccceEEEEEe
Confidence            3446774 57665553   1222211  112233343 3456788898853     344443        4678899988


Q ss_pred             EccCCCCccce----EEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEcc
Q 004971          493 NVDDVDGVSAV----RRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP  567 (721)
Q Consensus       493 ~~~~~~~~~~~----~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~Sp  567 (721)
                      ...........    ..+.. ..--.....|+|...-|++...++- .-++-+..++..  ....+ ...+.+.-..|.+
T Consensus        90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv-SV~~sV~~d~sr--VkaDi-~~~G~IhCACWT~  165 (671)
T PF15390_consen   90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV-SVLPSVHCDSSR--VKADI-KTSGLIHCACWTK  165 (671)
T ss_pred             ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce-eEeeeeeeCCce--EEEec-cCCceEEEEEecC
Confidence            75543110011    11111 1123355789999988888775421 122333333333  12233 4556677889999


Q ss_pred             CCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971          568 DGEWIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       568 DG~~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      ||++|+++-...      -+-|+||-.-
T Consensus       166 DG~RLVVAvGSs------LHSyiWd~~q  187 (671)
T PF15390_consen  166 DGQRLVVAVGSS------LHSYIWDSAQ  187 (671)
T ss_pred             cCCEEEEEeCCe------EEEEEecCch
Confidence            999999988653      4778898543

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=87.95  E-value=19  Score=37.34  Aligned_cols=97  Identities=15%  Similarity=0.156  Sum_probs=54.0

Q ss_pred             CCCEEEEEEecCCCCeeeEEEEECCCCceEEeeccc-CC-CCcccCcEEcCCCCEEEEEEeeCCCC---CCC--CcceeE
Q 004971          331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFV-SP-KTHHLNPFISPDSSRVGYHKCRGGST---RED--GNNQLL  403 (721)
Q Consensus       331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~-~~-~~~~~~~~~Spdg~~l~~~~~~~~~~---~~~--~~~~l~  403 (721)
                      ++++++|  ++       ||++|+++=+...+.... .+ ...-.++..+|+|..++|........   ...  ....+|
T Consensus       200 nr~y~Yy--ND-------vy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf  270 (521)
T KOG1230|consen  200 NRDYIYY--ND-------VYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMF  270 (521)
T ss_pred             CCceEEe--ee-------eEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeee
Confidence            6677877  32       999999987766665421 01 12234577889999998865543221   000  113455


Q ss_pred             EEeccCCCCc-----------ceecccCCCCceeCcCCCEEEEE
Q 004971          404 LENIKSPLPD-----------ISLFRFDGSFPSFSPKGDRIAFV  436 (721)
Q Consensus       404 ~~~~~~~~~~-----------~~~~~~~~~~~~~SpDG~~la~~  436 (721)
                      +.+...+...           +...+-.+..+++.++++.|+|.
T Consensus       271 ~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FG  314 (521)
T KOG1230|consen  271 LLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFG  314 (521)
T ss_pred             eecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEec
Confidence            5554442110           11111223456778888888886

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=87.78  E-value=48  Score=36.52  Aligned_cols=107  Identities=10%  Similarity=0.033  Sum_probs=51.8

Q ss_pred             EEEE--eCCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCC--CC-------CCCCCcEEEEEEEccCCCCcc
Q 004971          433 IAFV--EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGP--EF-------ASESSEVDIISINVDDVDGVS  501 (721)
Q Consensus       433 la~~--~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~--~~-------~~~~~~~~i~~~~~~~~~~~~  501 (721)
                      ++++  ..+.++.+|..+|+...-.......+..+|  ..+++.....  .+       ......-.|+-++..++   .
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG---~  377 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG---K  377 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEeeccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC---c
Confidence            4444  367899999999986543311112334444  4454432100  00       00122345666766553   1


Q ss_pred             ceEEcccCC--------CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc
Q 004971          502 AVRRLTTNG--------KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG  547 (721)
Q Consensus       502 ~~~~l~~~~--------~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~  547 (721)
                      .+-+.....        .........-.+..|++.+.   +..||.+|.++|+.
T Consensus       378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~---dG~l~ald~~tG~~  428 (488)
T cd00216         378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAA---DGYFRAFDATTGKE  428 (488)
T ss_pred             EeeEeeCCccccccccCCcccCcceEecCCeEEEECC---CCeEEEEECCCCce
Confidence            111111110        00111111224566666664   67899999999985

The alignment model contains an 8-bladed beta-propeller.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=87.66  E-value=24  Score=33.01  Aligned_cols=168  Identities=11%  Similarity=0.060  Sum_probs=81.3

Q ss_pred             eCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCC
Q 004971          437 EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN  513 (721)
Q Consensus       437 ~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~  513 (721)
                      +.+.|+++|+.+|+...-.   ...++.-....-|.+++...      ..++...+|+.+.        .+.+......-
T Consensus        66 g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LT------w~egvaf~~d~~t--------~~~lg~~~y~G  131 (262)
T COG3823          66 GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLT------WKEGVAFKYDADT--------LEELGRFSYEG  131 (262)
T ss_pred             ccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEE------eccceeEEEChHH--------hhhhcccccCC
Confidence            4678999999988743322   11222222222333443332      1223333333322        11222222222


Q ss_pred             cceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCC---cCceeeEEccCCCEEEEEEccCCCCCCceeEEE
Q 004971          514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP---WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL  590 (721)
Q Consensus       514 ~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~  590 (721)
                      ..-....|++.|...+.   ...|+.-|+++=......+++...   ...+.+-|- ||. |+.--...      ..|.+
T Consensus       132 eGWgLt~d~~~LimsdG---satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~-lyANVw~t------~~I~r  200 (262)
T COG3823         132 EGWGLTSDDKNLIMSDG---SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE-LYANVWQT------TRIAR  200 (262)
T ss_pred             cceeeecCCcceEeeCC---ceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccE-EEEeeeee------cceEE
Confidence            23355567777766554   566777676543221112222211   112344554 554 33222221      26888


Q ss_pred             EecCCCceEEeeecC-----------CCCCcCCeEECCCCCEEEEEEecC
Q 004971          591 IHPNGTGLRKLIQSG-----------SAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       591 ~d~~~~~~~~l~~~~-----------~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      .+.++|++.......           +....+.+++.|++..++.+...-
T Consensus       201 I~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~w  250 (262)
T COG3823         201 IDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLW  250 (262)
T ss_pred             EcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcC
Confidence            888888776654321           122346788999887777766543

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=87.63  E-value=34  Score=34.59  Aligned_cols=108  Identities=18%  Similarity=0.245  Sum_probs=52.7

Q ss_pred             ceeeEEcC---CCCeEEEEecCCCCCCCCCcEEEEEEEccC---CC--C----ccceEEcccCCCCCcceEEccCCCEEE
Q 004971          459 AFSTVWDP---VREAVVYTSGGPEFASESSEVDIISINVDD---VD--G----VSAVRRLTTNGKNNAFPSVSPDGKWIV  526 (721)
Q Consensus       459 ~~~~~~sp---dg~~la~~~~~~~~~~~~~~~~i~~~~~~~---~~--~----~~~~~~l~~~~~~~~~~~~SpDg~~l~  526 (721)
                      +..++.+|   ||++|+|...        ....+|.+.+.-   ..  .    ....+.+..........+.+++|. |+
T Consensus       130 ~~gial~~~~~d~r~LYf~~l--------ss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly  200 (287)
T PF03022_consen  130 IFGIALSPISPDGRWLYFHPL--------SSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LY  200 (287)
T ss_dssp             EEEEEE-TTSTTS-EEEEEET--------T-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EE
T ss_pred             ccccccCCCCCCccEEEEEeC--------CCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EE
Confidence            44555544   8899999863        345677776431   10  0    012233322222445578888775 55


Q ss_pred             EEEeeCCceeEEEEECCCCcc-cceEECcCCC---cCceeeEEcc--CCCEEEEEEcc
Q 004971          527 FRSTRTGYKNLYIMDAEGGEG-YGLHRLTEGP---WSDTMCNWSP--DGEWIAFASDR  578 (721)
Q Consensus       527 ~~s~~~g~~~l~~~d~~~g~~-~~~~~l~~~~---~~~~~~~~Sp--DG~~l~~~~~~  578 (721)
                      |..-.  ...|++|+..+.-. .....+....   .....+.+.+  +|. |++.+++
T Consensus       201 ~~~~~--~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~-L~v~snr  255 (287)
T PF03022_consen  201 FTDVE--QNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY-LWVLSNR  255 (287)
T ss_dssp             EEECC--CTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS--EEEEE-S
T ss_pred             EecCC--CCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCce-EEEEECc
Confidence            55432  67899999986211 0133333222   2345677777  554 5555544

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=87.55  E-value=29  Score=39.14  Aligned_cols=181  Identities=12%  Similarity=0.084  Sum_probs=108.5

Q ss_pred             CcCCCEEEEEeCCcEEEEECCCCceEE------Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971          427 SPKGDRIAFVEFPGVYVVNSDGSNRRQ------VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD  498 (721)
Q Consensus       427 SpDG~~la~~~~~~l~v~d~~~g~~~~------l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~  498 (721)
                      ++-|..|.|+....|....+++.+.+.      |.  ...+..++|.=-.+.++++-.        ..-.|-+..+.+. 
T Consensus       987 ~~~gt~LL~aqg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv--------~g~SI~rasL~G~- 1057 (1289)
T KOG1214|consen  987 PSVGTFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDV--------AGRSISRASLEGA- 1057 (1289)
T ss_pred             CCCcceEEEeccceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeec--------CCCccccccccCC-
Confidence            455888999988889988887655322      22  234455666655666666532        1112222233332 


Q ss_pred             CccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEE
Q 004971          499 GVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFAS  576 (721)
Q Consensus       499 ~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~  576 (721)
                         +.+.+...+ .....+++.--++.++++...  ..+|-+..+++.+.   +.|. .+-.....+...|=+..|+++.
T Consensus      1058 ---Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~--lD~IevA~LdG~~r---kvLf~tdLVNPR~iv~D~~rgnLYwtD 1129 (1289)
T KOG1214|consen 1058 ---EPETIVNSGLISPEGIAVDHIRRNMYWTDSV--LDKIEVALLDGSER---KVLFYTDLVNPRAIVVDPIRGNLYWTD 1129 (1289)
T ss_pred             ---CCceeecccCCCccceeeeeccceeeeeccc--cchhheeecCCcee---eEEEeecccCcceEEeecccCceeecc
Confidence               333333322 333445555556777777543  23455555554442   2222 2323345678888899999998


Q ss_pred             ccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       577 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      ...    ....|-..++++...+.+... .-+..+.+.|.|..+.|-|.....
T Consensus      1130 WnR----enPkIets~mDG~NrRilin~-DigLPNGLtfdpfs~~LCWvDAGt 1177 (1289)
T KOG1214|consen 1130 WNR----ENPKIETSSMDGENRRILINT-DIGLPNGLTFDPFSKLLCWVDAGT 1177 (1289)
T ss_pred             ccc----cCCcceeeccCCccceEEeec-ccCCCCCceeCcccceeeEEecCC
Confidence            764    345788889888766666553 445667899999999998876544

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=87.48  E-value=7.6  Score=38.25  Aligned_cols=146  Identities=15%  Similarity=0.155  Sum_probs=85.2

Q ss_pred             CCceeCcCCCEEEEEeCCcEEEEECC--CCceE--EEe-------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEE
Q 004971          422 SFPSFSPKGDRIAFVEFPGVYVVNSD--GSNRR--QVY-------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDII  490 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~~~~l~v~d~~--~g~~~--~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~  490 (721)
                      ..+.+..|-+.+....+-.|-+|+++  .+...  .+.       ...+.+..|+|....+++.+      ...++++|.
T Consensus       176 NSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS------sSkG~Ikl~  249 (460)
T COG5170         176 NSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS------SSKGEIKLN  249 (460)
T ss_pred             eeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe------cCCCcEEeh
Confidence            34566677776666666667777764  22221  222       23466788999877666554      356788887


Q ss_pred             EEEccCC-CCccceEEcccC----------CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC---
Q 004971          491 SINVDDV-DGVSAVRRLTTN----------GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG---  556 (721)
Q Consensus       491 ~~~~~~~-~~~~~~~~l~~~----------~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~---  556 (721)
                      ++....- +.......++..          -..+..+.||++|++|+..+    ...+.+||+.-.+ ..++.+.-+   
T Consensus       250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd----yltvkiwDvnm~k-~pikTi~~h~~l  324 (460)
T COG5170         250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD----YLTVKIWDVNMAK-NPIKTIPMHCDL  324 (460)
T ss_pred             hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec----cceEEEEeccccc-CCceeechHHHH
Confidence            7763211 000011111111          12456689999999998776    5788899886433 124444211   


Q ss_pred             ------------CcCceeeEEccCCCEEEEEEcc
Q 004971          557 ------------PWSDTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       557 ------------~~~~~~~~~SpDG~~l~~~~~~  578 (721)
                                  .+.-..+.||-|.+.++.++..
T Consensus       325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~  358 (460)
T COG5170         325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGSYS  358 (460)
T ss_pred             HHHHHhhhhccceeeeEEEEecCCcccccccccc
Confidence                        1122457899999988877765

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=86.85  E-value=30  Score=34.99  Aligned_cols=155  Identities=19%  Similarity=0.297  Sum_probs=77.0

Q ss_pred             EEEEE---eCCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc
Q 004971          432 RIAFV---EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT  508 (721)
Q Consensus       432 ~la~~---~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~  508 (721)
                      ..||.   +...|.++|+.+++..++...     .++++....-+...+                        ....+..
T Consensus        78 ~~aYItD~~~~glIV~dl~~~~s~Rv~~~-----~~~~~p~~~~~~i~g------------------------~~~~~~d  128 (287)
T PF03022_consen   78 GFAYITDSGGPGLIVYDLATGKSWRVLHN-----SFSPDPDAGPFTIGG------------------------ESFQWPD  128 (287)
T ss_dssp             EEEEEEETTTCEEEEEETTTTEEEEEETC-----GCTTS-SSEEEEETT------------------------EEEEETT
T ss_pred             eEEEEeCCCcCcEEEEEccCCcEEEEecC-----CcceeccccceeccC------------------------ceEecCC
Confidence            45555   246899999999998777622     222332222222110                        1111111


Q ss_pred             CCCCCcceEEc---cCCCEEEEEEeeCCceeEEEEECC---CCcc-------cceEECcCCCcCceeeEEccCCCEEEEE
Q 004971          509 NGKNNAFPSVS---PDGKWIVFRSTRTGYKNLYIMDAE---GGEG-------YGLHRLTEGPWSDTMCNWSPDGEWIAFA  575 (721)
Q Consensus       509 ~~~~~~~~~~S---pDg~~l~~~s~~~g~~~l~~~d~~---~g~~-------~~~~~l~~~~~~~~~~~~SpDG~~l~~~  575 (721)
                         .....+.+   +||++|+|..-.  ..++|.++.+   ....       ..++.+..........+.+++|. |+|+
T Consensus       129 ---g~~gial~~~~~d~r~LYf~~ls--s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~  202 (287)
T PF03022_consen  129 ---GIFGIALSPISPDGRWLYFHPLS--SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFT  202 (287)
T ss_dssp             ---SEEEEEE-TTSTTS-EEEEEETT---SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEE
T ss_pred             ---CccccccCCCCCCccEEEEEeCC--CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEe
Confidence               13344554   599999998752  3468877632   1111       01223322112235678888775 6666


Q ss_pred             EccCCCCCCceeEEEEecCC----CceEEeeecCC-CCCcCCeEECC--CCCEEEEEEec
Q 004971          576 SDRDNPGSGSFEMYLIHPNG----TGLRKLIQSGS-AGRANHPYFSP--DGKSIVFTSDY  628 (721)
Q Consensus       576 ~~~~~~~~~~~~i~~~d~~~----~~~~~l~~~~~-~~~~~~~~~Sp--DG~~l~~~~~~  628 (721)
                      .-..      ..|+.|+..+    .....+..... -.....+.+.+  +|. |++.+++
T Consensus       203 ~~~~------~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~-L~v~snr  255 (287)
T PF03022_consen  203 DVEQ------NAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY-LWVLSNR  255 (287)
T ss_dssp             ECCC------TEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS--EEEEE-S
T ss_pred             cCCC------CeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCce-EEEEECc
Confidence            6543      3899999887    23444443211 12445677877  555 4444543

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=86.80  E-value=57  Score=36.31  Aligned_cols=54  Identities=9%  Similarity=-0.027  Sum_probs=29.1

Q ss_pred             eeEEEEECCCCcccceEECcCCCc-CceeeEEccCCCEEEEEEc-cCCCCCCceeEEEEecCCCceEE
Q 004971          535 KNLYIMDAEGGEGYGLHRLTEGPW-SDTMCNWSPDGEWIAFASD-RDNPGSGSFEMYLIHPNGTGLRK  600 (721)
Q Consensus       535 ~~l~~~d~~~g~~~~~~~l~~~~~-~~~~~~~SpDG~~l~~~~~-~~~~~~~~~~i~~~d~~~~~~~~  600 (721)
                      ..|..+|+.+|+.   .--..... ....+ ..-.|. |+|... ++       .++.+|..+|+..-
T Consensus       441 g~l~AiD~~tGk~---~W~~~~~~p~~~~~-l~t~g~-lvf~g~~~G-------~l~a~D~~TGe~lw  496 (527)
T TIGR03075       441 GSLIAWDPITGKI---VWEHKEDFPLWGGV-LATAGD-LVFYGTLEG-------YFKAFDAKTGEELW  496 (527)
T ss_pred             eeEEEEeCCCCce---eeEecCCCCCCCcc-eEECCc-EEEEECCCC-------eEEEEECCCCCEeE
Confidence            3588888888873   22211111 11122 122444 444443 33       79999999997543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=86.58  E-value=3.7  Score=45.22  Aligned_cols=158  Identities=12%  Similarity=0.137  Sum_probs=92.2

Q ss_pred             CCceeCcCCCEEEEEeCCcEEEEECCCC--ceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          422 SFPSFSPKGDRIAFVEFPGVYVVNSDGS--NRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~~~~l~v~d~~~g--~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      ....++|-|+-++.++...+++.|++..  .++.|.   +-.+.+..|||...+=+.+..     ....+..+|.+....
T Consensus        28 ~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVs-----ts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   28 NAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVS-----TSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEe-----cCcchhhhhhhhcCC
Confidence            3467889999999998899999999743  234433   556678889887654433321     234556667665544


Q ss_pred             CCCccceE--EcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEcc-CCCEE
Q 004971          497 VDGVSAVR--RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSP-DGEWI  572 (721)
Q Consensus       497 ~~~~~~~~--~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~Sp-DG~~l  572 (721)
                      .    ...  .+-.+...+....|.|...-+.....-  +..+..||..+-..  ....+ ........+.|+- |+..|
T Consensus       103 ~----~aIef~lhghsraitd~n~~~q~pdVlatcsv--dt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p~vl  174 (1081)
T KOG0309|consen  103 S----NAIEFVLHGHSRAITDINFNPQHPDVLATCSV--DTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDPNVL  174 (1081)
T ss_pred             c----cceEEEEecCccceeccccCCCCCcceeeccc--cccceeeeccCCCc--ceeeeecccccCceeeecccCcchh
Confidence            3    222  233344556667788776655544332  45677788775442  22222 1122335677864 34433


Q ss_pred             EEEEccCCCCCCceeEEEEecCCCceEE
Q 004971          573 AFASDRDNPGSGSFEMYLIHPNGTGLRK  600 (721)
Q Consensus       573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~  600 (721)
                      + .+..       ..|++||...|....
T Consensus       175 a-sshg-------~~i~vwd~r~gs~pl  194 (1081)
T KOG0309|consen  175 A-SSHG-------NDIFVWDLRKGSTPL  194 (1081)
T ss_pred             h-hccC-------CceEEEeccCCCcce
Confidence            3 3322       379999987665333

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.56  E-value=16  Score=38.30  Aligned_cols=105  Identities=17%  Similarity=0.169  Sum_probs=71.8

Q ss_pred             CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc--CCCcCceeeEEccCCCEEEEEEccCCCCCCceeE
Q 004971          511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT--EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM  588 (721)
Q Consensus       511 ~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i  588 (721)
                      +.+.+..||+|.+-|++...   +..+-.++....+........  .+...+..+.|+. ...||+..+.+      ..+
T Consensus        67 G~I~SIkFSlDnkilAVQR~---~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~-s~e~A~i~~~G------~e~  136 (657)
T KOG2377|consen   67 GEIKSIKFSLDNKILAVQRT---SKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS-STEIAFITDQG------IEF  136 (657)
T ss_pred             CceeEEEeccCcceEEEEec---CceEEEEecCCCchhhHHHHHhccCcceeEEEEEec-CeeEEEEecCC------eEE
Confidence            46778999999999998876   566777776544421111111  1233456788984 48899998764      578


Q ss_pred             EEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEe
Q 004971          589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD  627 (721)
Q Consensus       589 ~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~  627 (721)
                      |..+......+.+..  +.-.+....|.++-+.+..++.
T Consensus       137 y~v~pekrslRlVks--~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  137 YQVLPEKRSLRLVKS--HNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             EEEchhhhhhhhhhh--cccCccEEEEccccceEeeecc
Confidence            888876655554432  5667888999999888777665

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=85.70  E-value=8.7  Score=40.36  Aligned_cols=190  Identities=14%  Similarity=0.109  Sum_probs=109.8

Q ss_pred             CCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe----ecCceeeEEcC--CCCeEEEEecCCCCCCCCCcEEEEEEE
Q 004971          421 GSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY----FKNAFSTVWDP--VREAVVYTSGGPEFASESSEVDIISIN  493 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~----~~~~~~~~~sp--dg~~la~~~~~~~~~~~~~~~~i~~~~  493 (721)
                      +..+.|...|..|+..+ +..+.+||-..+..+.-+    ...+++..|-|  +.+.|+..+       .++.+++-.+.
T Consensus       145 VntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s-------~dgqvr~s~i~  217 (559)
T KOG1334|consen  145 VNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS-------RDGQVRVSEIL  217 (559)
T ss_pred             cceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc-------ccCceeeeeec
Confidence            45567888898888874 678899998777654433    22445555555  445555544       56777777666


Q ss_pred             ccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC--C--cCceeeEEccCC
Q 004971          494 VDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG--P--WSDTMCNWSPDG  569 (721)
Q Consensus       494 ~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~--~--~~~~~~~~SpDG  569 (721)
                      ..+.  ....+++..+.+.+..++.-|+..+-++.+..  +..+.-+|+..+.+......-..  .  .....++..|-.
T Consensus       218 ~t~~--~e~t~rl~~h~g~vhklav~p~sp~~f~S~ge--D~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n  293 (559)
T KOG1334|consen  218 ETGY--VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGE--DAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN  293 (559)
T ss_pred             cccc--eecceecccccCccceeeecCCCCCccccccc--ccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence            5442  12356777777888888999988877666543  55677778877654211111111  1  123456666765


Q ss_pred             C-EEEEEEccCCCCCCceeEEEEecCCCc------------eEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          570 E-WIAFASDRDNPGSGSFEMYLIHPNGTG------------LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       570 ~-~l~~~~~~~~~~~~~~~i~~~d~~~~~------------~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      . .+++...+.       .+.+||...-.            +..+.. .....+..++||.+|.-|..+.++.
T Consensus       294 t~~faVgG~dq-------f~RvYD~R~~~~e~~n~~~~~f~p~hl~~-d~~v~ITgl~Ysh~~sElLaSYnDe  358 (559)
T KOG1334|consen  294 TNEFAVGGSDQ-------FARVYDQRRIDKEENNGVLDKFCPHHLVE-DDPVNITGLVYSHDGSELLASYNDE  358 (559)
T ss_pred             ccccccCChhh-------hhhhhcccchhhccccchhhhcCCccccc-cCcccceeEEecCCccceeeeeccc
Confidence            5 445444442       34444432110            111111 1234567889998887776655554

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.36  E-value=15  Score=41.24  Aligned_cols=94  Identities=13%  Similarity=0.129  Sum_probs=56.7

Q ss_pred             ccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccC-----CCEEEEEEccCCCCCCceeEEEEec
Q 004971          519 SPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD-----GEWIAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       519 SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD-----G~~l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                      .-+|++++..++   ++.+.+..+.+.+.  ..+..- ...+..++++||     .++++.++..        .|+++.-
T Consensus        80 ~~~Gey~asCS~---DGkv~I~sl~~~~~--~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~a--------glvL~er  145 (846)
T KOG2066|consen   80 ILEGEYVASCSD---DGKVVIGSLFTDDE--ITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMA--------GLVLSER  145 (846)
T ss_pred             ccCCceEEEecC---CCcEEEeeccCCcc--ceeEec-CCcceeEEeccchhhhhhhheeecCcc--------eEEEehh
Confidence            457888888887   67777777766653  222322 223467888888     4455544433        2555432


Q ss_pred             --CCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          594 --NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       594 --~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                        -+.+...+... ..|.+..+.|-  |.+|+|+++.+
T Consensus       146 ~wlgnk~~v~l~~-~eG~I~~i~W~--g~lIAWand~G  180 (846)
T KOG2066|consen  146 NWLGNKDSVVLSE-GEGPIHSIKWR--GNLIAWANDDG  180 (846)
T ss_pred             hhhcCccceeeec-CccceEEEEec--CcEEEEecCCC
Confidence              22222222332 56778888885  77999988776

>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]

Probab=85.31  E-value=59  Score=36.05  Aligned_cols=37  Identities=19%  Similarity=0.327  Sum_probs=27.8

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEee
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELT  363 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~  363 (721)
                      ....+.++|.|+.+|+|+...      .+|+.++.+++.+.++
T Consensus       201 ~~~dP~lcP~~~~fia~i~~~------dl~V~n~~~~~ekrlt  237 (867)
T KOG2281|consen  201 TRMDPKLCPADPDFIAYIKVC------DLWVLNILTGEEKRLT  237 (867)
T ss_pred             CccCcccCCCCccceeeeehh------hhhhhhhhhchhhcee
Confidence            446788888669999997644      2888888888776664

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=85.15  E-value=32  Score=33.59  Aligned_cols=138  Identities=17%  Similarity=0.241  Sum_probs=76.5

Q ss_pred             ceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCC----Ccc-cceEECcCCCcCceeeEEccCCCEEEEE
Q 004971          502 AVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG----GEG-YGLHRLTEGPWSDTMCNWSPDGEWIAFA  575 (721)
Q Consensus       502 ~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~----g~~-~~~~~l~~~~~~~~~~~~SpDG~~l~~~  575 (721)
                      +.+.+.... .....-++-|||+.|.+....+|...+.+++..+    ... .....+....+. ....--|||+.|+++
T Consensus        57 ~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY-pT~~~L~DG~vlIvG  135 (243)
T PF07250_consen   57 TFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY-PTATTLPDGRVLIVG  135 (243)
T ss_pred             cEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc-ccceECCCCCEEEEe
Confidence            444444322 3445567889999998888777777888888754    110 001123333333 344556899988888


Q ss_pred             EccCCCCCCceeEEEEecCC--CceEEe--eec----CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCcc
Q 004971          576 SDRDNPGSGSFEMYLIHPNG--TGLRKL--IQS----GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGE  647 (721)
Q Consensus       576 ~~~~~~~~~~~~i~~~d~~~--~~~~~l--~~~----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~  647 (721)
                      ....    .  ..-.++...  .....+  ...    .....+-.+...|||+.++++..+.                  
T Consensus       136 G~~~----~--t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s------------------  191 (243)
T PF07250_consen  136 GSNN----P--TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS------------------  191 (243)
T ss_pred             CcCC----C--cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc------------------
Confidence            7763    1  222333311  112222  110    0112233567899999888766532                  


Q ss_pred             EEEEEcCCCCe-EEeccCC
Q 004971          648 IFKIKLDGSDL-KRLTQNS  665 (721)
Q Consensus       648 l~~~d~~~~~~-~~lt~~~  665 (721)
                       .++|.++.++ +.+..-.
T Consensus       192 -~i~d~~~n~v~~~lP~lP  209 (243)
T PF07250_consen  192 -IIYDYKTNTVVRTLPDLP  209 (243)
T ss_pred             -EEEeCCCCeEEeeCCCCC
Confidence             3458777765 6776533

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=84.92  E-value=68  Score=35.52  Aligned_cols=103  Identities=16%  Similarity=0.205  Sum_probs=55.2

Q ss_pred             ceeEEEEECCCCcccceEECcCC---CcCceeeEEccCCCEE--EEEEcc---CCCCCCceeEEEEecCCCceEEeeecC
Q 004971          534 YKNLYIMDAEGGEGYGLHRLTEG---PWSDTMCNWSPDGEWI--AFASDR---DNPGSGSFEMYLIHPNGTGLRKLIQSG  605 (721)
Q Consensus       534 ~~~l~~~d~~~g~~~~~~~l~~~---~~~~~~~~~SpDG~~l--~~~~~~---~~~~~~~~~i~~~d~~~~~~~~l~~~~  605 (721)
                      ...|+.+++++++   ++-...+   ..-....+.+.-+..|  |.+...   .........||++|-+-...-++...+
T Consensus       247 ~T~I~kf~~~~~~---~~y~~sg~V~G~llnqFsmdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD~~L~~vG~l~~la  323 (521)
T PF09826_consen  247 STTIYKFALDGGK---IEYVGSGSVPGYLLNQFSMDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLDEDLKIVGSLEGLA  323 (521)
T ss_pred             ceEEEEEEccCCc---EEEEEEEEECcEEcccccEeccCCEEEEEEecCcccccCCCCceEEEEEECCCCcEeEEccccC
Confidence            3578999998877   3322211   1112334444433333  333321   111235678999983333333443333


Q ss_pred             CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971          606 SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       606 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~  656 (721)
                      .+..+.++.|--|  +.++...+...|               ||++|+...
T Consensus       324 ~gE~IysvRF~Gd--~~Y~VTFrqvDP---------------LfviDLsdP  357 (521)
T PF09826_consen  324 PGERIYSVRFMGD--RAYLVTFRQVDP---------------LFVIDLSDP  357 (521)
T ss_pred             CCceEEEEEEeCC--eEEEEEEeecCc---------------eEEEECCCC
Confidence            4556778888654  555555555444               999999774

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=84.81  E-value=26  Score=34.60  Aligned_cols=139  Identities=11%  Similarity=0.030  Sum_probs=76.5

Q ss_pred             ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEE
Q 004971          459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY  538 (721)
Q Consensus       459 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~  538 (721)
                      ...+.|++-|..+++.-       .++.+.+......-   ..+.+.+..++.......|+-..--|+|....  +..|.
T Consensus       124 ~lslD~~~~~~~i~vs~-------s~G~~~~v~~t~~~---le~vq~wk~He~E~Wta~f~~~~pnlvytGgD--D~~l~  191 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSD-------SRGSISGVYETEMV---LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGD--DGSLS  191 (339)
T ss_pred             eeEEEeeccCceEEEEc-------CCCcEEEEecceee---eeecccccccceeeeeeecccCCCceEEecCC--CceEE
Confidence            45678888888876653       34455432222110   01222344455444555666555556666543  67899


Q ss_pred             EEECCCCcccceEE-CcCCCcCceeeEEc-cCCCEEEEEEccCCCCCCceeEEEEecCC-CceEEeeecCCCCCcCCeEE
Q 004971          539 IMDAEGGEGYGLHR-LTEGPWSDTMCNWS-PDGEWIAFASDRDNPGSGSFEMYLIHPNG-TGLRKLIQSGSAGRANHPYF  615 (721)
Q Consensus       539 ~~d~~~g~~~~~~~-l~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~~~~i~~~d~~~-~~~~~l~~~~~~~~~~~~~~  615 (721)
                      .||+.-.... +.. ..-+...+..+.-| |++.+|+.++.++       .|.+||... +++  +......+.+..+.+
T Consensus       192 ~~D~R~p~~~-i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe-------~i~~~DtRnm~kP--l~~~~v~GGVWRi~~  261 (339)
T KOG0280|consen  192 CWDIRIPKTF-IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE-------CIRVLDTRNMGKP--LFKAKVGGGVWRIKH  261 (339)
T ss_pred             EEEecCCcce-eeecceeeecceEEEecCCCCCceEEEecccc-------ceeeeehhcccCc--cccCccccceEEEEe
Confidence            9998722210 111 11223334444444 4677888888876       899999763 333  332224577888888


Q ss_pred             CCCC
Q 004971          616 SPDG  619 (721)
Q Consensus       616 SpDG  619 (721)
                      +|--
T Consensus       262 ~p~~  265 (339)
T KOG0280|consen  262 HPEI  265 (339)
T ss_pred             cchh
Confidence            8853

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=84.64  E-value=5.7  Score=43.14  Aligned_cols=75  Identities=23%  Similarity=0.305  Sum_probs=55.4

Q ss_pred             cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCC-cceEEccCCCEEEEEEeeCCce
Q 004971          457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN-AFPSVSPDGKWIVFRSTRTGYK  535 (721)
Q Consensus       457 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~SpDg~~l~~~s~~~g~~  535 (721)
                      ..+..+.|+|--..+|+..       .++++-|++++-.      .+-.+...+..+ ..++|-|||+.|++.-.   ++
T Consensus        21 ~~i~~~ewnP~~dLiA~~t-------~~gelli~R~n~q------Rlwtip~p~~~v~~sL~W~~DGkllaVg~k---dG   84 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRT-------EKGELLIHRLNWQ------RLWTIPIPGENVTASLCWRPDGKLLAVGFK---DG   84 (665)
T ss_pred             cceEEEEEcCccchhheec-------cCCcEEEEEeccc------eeEeccCCCCccceeeeecCCCCEEEEEec---CC
Confidence            3456778999888888875       5677777777632      344444333333 48999999999999987   78


Q ss_pred             eEEEEECCCCcc
Q 004971          536 NLYIMDAEGGEG  547 (721)
Q Consensus       536 ~l~~~d~~~g~~  547 (721)
                      .|.+.|+.+|..
T Consensus        85 ~I~L~Dve~~~~   96 (665)
T KOG4640|consen   85 TIRLHDVEKGGR   96 (665)
T ss_pred             eEEEEEccCCCc
Confidence            999999998874

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=82.93  E-value=4.1  Score=45.60  Aligned_cols=104  Identities=18%  Similarity=0.256  Sum_probs=65.1

Q ss_pred             CCcceEEccCCCEEEEEEeeC---CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeE
Q 004971          512 NNAFPSVSPDGKWIVFRSTRT---GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM  588 (721)
Q Consensus       512 ~~~~~~~SpDg~~l~~~s~~~---g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i  588 (721)
                      .....+|+|-.-.+++++-..   |.-.||   .++|++  -+.++ .+....++.|.|.. .+++.....    +  .+
T Consensus        17 vsti~SWHPsePlfAVA~fS~er~GSVtIf---adtGEP--qr~Vt-~P~hatSLCWHpe~-~vLa~gwe~----g--~~   83 (1416)
T KOG3617|consen   17 VSTISSWHPSEPLFAVASFSPERGGSVTIF---ADTGEP--QRDVT-YPVHATSLCWHPEE-FVLAQGWEM----G--VS   83 (1416)
T ss_pred             cccccccCCCCceeEEEEecCCCCceEEEE---ecCCCC--Ccccc-cceehhhhccChHH-HHHhhcccc----c--ee
Confidence            344568999888888876532   333444   467774  33333 33445679999974 344444432    2  56


Q ss_pred             EEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       589 ~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      -+|...+.+...+... +...+..+.||+||..|+...+.+
T Consensus        84 ~v~~~~~~e~htv~~t-h~a~i~~l~wS~~G~~l~t~d~~g  123 (1416)
T KOG3617|consen   84 DVQKTNTTETHTVVET-HPAPIQGLDWSHDGTVLMTLDNPG  123 (1416)
T ss_pred             EEEecCCceeeeeccC-CCCCceeEEecCCCCeEEEcCCCc
Confidence            6666655554444332 677788899999999988766554

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=82.12  E-value=6.7  Score=42.61  Aligned_cols=74  Identities=19%  Similarity=0.161  Sum_probs=50.7

Q ss_pred             CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCc-eeeEEccCCCEEEEEEccCCCCCCceeEEE
Q 004971          512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD-TMCNWSPDGEWIAFASDRDNPGSGSFEMYL  590 (721)
Q Consensus       512 ~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~-~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~  590 (721)
                      .+....|+|--..||+...   .++|.+..++-.+   +..++.+...+ ..++|-|||+.|+++-.++       .|.+
T Consensus        22 ~i~~~ewnP~~dLiA~~t~---~gelli~R~n~qR---lwtip~p~~~v~~sL~W~~DGkllaVg~kdG-------~I~L   88 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTE---KGELLIHRLNWQR---LWTIPIPGENVTASLCWRPDGKLLAVGFKDG-------TIRL   88 (665)
T ss_pred             ceEEEEEcCccchhheecc---CCcEEEEEeccce---eEeccCCCCccceeeeecCCCCEEEEEecCC-------eEEE
Confidence            4455778888777777765   4445444444223   45555222223 4899999999999999886       8999


Q ss_pred             EecCCCce
Q 004971          591 IHPNGTGL  598 (721)
Q Consensus       591 ~d~~~~~~  598 (721)
                      .|+.++..
T Consensus        89 ~Dve~~~~   96 (665)
T KOG4640|consen   89 HDVEKGGR   96 (665)
T ss_pred             EEccCCCc
Confidence            99988753

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.69  E-value=13  Score=38.95  Aligned_cols=105  Identities=12%  Similarity=0.067  Sum_probs=70.0

Q ss_pred             ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc---CCCCCcceEEccCCCEEEEEEeeC
Q 004971          456 FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT---NGKNNAFPSVSPDGKWIVFRSTRT  532 (721)
Q Consensus       456 ~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~SpDg~~l~~~s~~~  532 (721)
                      .+.+.++.||+|.+.||+..       .+..+.++....+..    .......   ....+..+.|+.. +-+++.++. 
T Consensus        66 ~G~I~SIkFSlDnkilAVQR-------~~~~v~f~nf~~d~~----~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~-  132 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQR-------TSKTVDFCNFIPDNS----QLEYTQECKTKNANILGFCWTSS-TEIAFITDQ-  132 (657)
T ss_pred             CCceeEEEeccCcceEEEEe-------cCceEEEEecCCCch----hhHHHHHhccCcceeEEEEEecC-eeEEEEecC-
Confidence            56788999999999999975       456777766633321    1111111   1234667888755 788888763 


Q ss_pred             CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971          533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       533 g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~  577 (721)
                       ..++|..+.....   ++-+......+....|.++-+.++.+..
T Consensus       133 -G~e~y~v~pekrs---lRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  133 -GIEFYQVLPEKRS---LRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             -CeEEEEEchhhhh---hhhhhhcccCccEEEEccccceEeeecc
Confidence             4578888877555   4444455556678899999887776665

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=81.58  E-value=12  Score=41.49  Aligned_cols=152  Identities=13%  Similarity=0.119  Sum_probs=84.3

Q ss_pred             ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce-e---cccCCCCceeCcCCC---EEEEEeCCcEEEE
Q 004971          372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS-L---FRFDGSFPSFSPKGD---RIAFVEFPGVYVV  444 (721)
Q Consensus       372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~---~~~~~~~~~~SpDG~---~la~~~~~~l~v~  444 (721)
                      .....++|-|+-|+.++..+          +++.++..+-.... +   .+..+....|||...   +++..+...-.+|
T Consensus        27 ~~a~si~p~grdi~lAsr~g----------l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiw   96 (1081)
T KOG0309|consen   27 FNAVSINPSGRDIVLASRQG----------LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIW   96 (1081)
T ss_pred             ccceeeccccchhhhhhhcC----------eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhh
Confidence            44567788888887765433          56666654422211 1   112234457776553   3444455666677


Q ss_pred             ECCCCceEEEe------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEE
Q 004971          445 NSDGSNRRQVY------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV  518 (721)
Q Consensus       445 d~~~g~~~~l~------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  518 (721)
                      +++-..-+.|.      ...+..+.|.|...-+..+.      .-+..++.|++.....    ..-....-......+.|
T Consensus        97 nlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatc------svdt~vh~wd~rSp~~----p~ys~~~w~s~asqVkw  166 (1081)
T KOG0309|consen   97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATC------SVDTYVHAWDMRSPHR----PFYSTSSWRSAASQVKW  166 (1081)
T ss_pred             hhhcCCccceEEEEecCccceeccccCCCCCcceeec------cccccceeeeccCCCc----ceeeeecccccCceeee
Confidence            77543322222      34677888888776665554      2467788888765431    11111111123455677


Q ss_pred             ccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971          519 SPDGKWIVFRSTRTGYKNLYIMDAEGGE  546 (721)
Q Consensus       519 SpDg~~l~~~s~~~g~~~l~~~d~~~g~  546 (721)
                      +--.-.+...+.   ...|++||...|.
T Consensus       167 nyk~p~vlassh---g~~i~vwd~r~gs  191 (1081)
T KOG0309|consen  167 NYKDPNVLASSH---GNDIFVWDLRKGS  191 (1081)
T ss_pred             cccCcchhhhcc---CCceEEEeccCCC
Confidence            754444444444   5789999998765

>PF15525 DUF4652: Domain of unknown function (DUF4652)

Probab=81.49  E-value=30  Score=31.77  Aligned_cols=102  Identities=16%  Similarity=0.234  Sum_probs=62.5

Q ss_pred             ccCCCEEEEEEeeC------CceeEEEEECCCCcccceEECc--CC--CcCceeeEEccCCCEEEEEEccCCCCCCceeE
Q 004971          519 SPDGKWIVFRSTRT------GYKNLYIMDAEGGEGYGLHRLT--EG--PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM  588 (721)
Q Consensus       519 SpDg~~l~~~s~~~------g~~~l~~~d~~~g~~~~~~~l~--~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i  588 (721)
                      |-+|++=|+.-..+      +-..||+.|+.+++.   ..|.  ..  ....-.+.|--|...++..+...+..+.+..|
T Consensus        66 s~~~~~saciegkg~~a~eEgiGkIYIkn~~~~~~---~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnL  142 (200)
T PF15525_consen   66 SENGKYSACIEGKGPEAEEEGIGKIYIKNLNNNNW---WSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNL  142 (200)
T ss_pred             ccCCceeEEEEcCCCccccccceeEEEEecCCCce---EEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeE
Confidence            34577766664432      456899999998883   3332  21  23334677887766666555443333455689


Q ss_pred             EEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEE
Q 004971          589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF  624 (721)
Q Consensus       589 ~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~  624 (721)
                      |++++.+++...++.. .......+.+--+|..|.+
T Consensus       143 y~~nl~tg~~~~ly~~-~dkkqQVis~e~~gd~L~L  177 (200)
T PF15525_consen  143 YKYNLNTGNLTELYEW-KDKKQQVISAEKNGDNLNL  177 (200)
T ss_pred             EEEEccCCceeEeeec-cccceeEEEEEEeCCEEEE
Confidence            9999999999998863 2223334455555555543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=81.06  E-value=57  Score=31.77  Aligned_cols=148  Identities=13%  Similarity=-0.005  Sum_probs=82.8

Q ss_pred             CceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe--ecCcee-eEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971          423 FPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY--FKNAFS-TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV  497 (721)
Q Consensus       423 ~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~--~~~~~~-~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~  497 (721)
                      .+.+-+|.+.++|.+  ...+.-+|..+|+...-.  ...+.. +-.  -|.+++...         .+..+|-++.+++
T Consensus        15 pLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GC---------y~g~lYfl~~~tG   83 (354)
T KOG4649|consen   15 PLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGC---------YSGGLYFLCVKTG   83 (354)
T ss_pred             cEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEE---------ccCcEEEEEecch
Confidence            356667777777773  445666788888754322  222211 111  455666665         2233444444432


Q ss_pred             CCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971          498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       498 ~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~  577 (721)
                         .+.......+..-..+...+|+..|+..+.   +.++|.+|..+...  +-...-+......|...|--..|+++..
T Consensus        84 ---s~~w~f~~~~~vk~~a~~d~~~glIycgsh---d~~~yalD~~~~~c--VykskcgG~~f~sP~i~~g~~sly~a~t  155 (354)
T KOG4649|consen   84 ---SQIWNFVILETVKVRAQCDFDGGLIYCGSH---DGNFYALDPKTYGC--VYKSKCGGGTFVSPVIAPGDGSLYAAIT  155 (354)
T ss_pred             ---hheeeeeehhhhccceEEcCCCceEEEecC---CCcEEEecccccce--EEecccCCceeccceecCCCceEEEEec
Confidence               123333333323345678899999999988   78999999987653  4333333333356788883334666665


Q ss_pred             cCCCCCCceeEEEEecCCC
Q 004971          578 RDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       578 ~~~~~~~~~~i~~~d~~~~  596 (721)
                      .+       .+.....+..
T Consensus       156 ~G-------~vlavt~~~~  167 (354)
T KOG4649|consen  156 AG-------AVLAVTKNPY  167 (354)
T ss_pred             cc-------eEEEEccCCC
Confidence            43       4555554444

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=80.92  E-value=60  Score=32.01  Aligned_cols=145  Identities=10%  Similarity=0.118  Sum_probs=78.6

Q ss_pred             CCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCcee
Q 004971          483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM  562 (721)
Q Consensus       483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~  562 (721)
                      ..++..|..++..++    +...-..-+.....--...-+.+|+....+  ....+++|.++-+.  +.++... ..-..
T Consensus        64 ~yG~S~l~~~d~~tg----~~~~~~~l~~~~FgEGit~~~d~l~qLTWk--~~~~f~yd~~tl~~--~~~~~y~-~EGWG  134 (264)
T PF05096_consen   64 LYGQSSLRKVDLETG----KVLQSVPLPPRYFGEGITILGDKLYQLTWK--EGTGFVYDPNTLKK--IGTFPYP-GEGWG  134 (264)
T ss_dssp             STTEEEEEEEETTTS----SEEEEEE-TTT--EEEEEEETTEEEEEESS--SSEEEEEETTTTEE--EEEEE-S-SS--E
T ss_pred             CCCcEEEEEEECCCC----cEEEEEECCccccceeEEEECCEEEEEEec--CCeEEEEccccceE--EEEEecC-CcceE
Confidence            467888888888775    433222222222222222225678888776  55789999987654  4444322 11144


Q ss_pred             eEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC-CCC---CcCCeEECCCCCEEEEEEecCCCcCCCCCC
Q 004971          563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG-SAG---RANHPYFSPDGKSIVFTSDYGGISAEPIST  638 (721)
Q Consensus       563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~---~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~  638 (721)
                      ++  .||+.|+.+....       .|+.+|..+-+..+-.... ...   ..+.+.|- +|. | |+.--..        
T Consensus       135 Lt--~dg~~Li~SDGS~-------~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-I-yANVW~t--------  194 (264)
T PF05096_consen  135 LT--SDGKRLIMSDGSS-------RLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-I-YANVWQT--------  194 (264)
T ss_dssp             EE--ECSSCEEEE-SSS-------EEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-E-EEEETTS--------
T ss_pred             EE--cCCCEEEEECCcc-------ceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-E-EEEeCCC--------
Confidence            55  6888888777654       8999998876544322211 111   22345564 554 3 3343332        


Q ss_pred             CCCCCCCccEEEEEcCCCCeEEecc
Q 004971          639 PHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       639 ~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                             ..|.++|+++|++...-+
T Consensus       195 -------d~I~~Idp~tG~V~~~iD  212 (264)
T PF05096_consen  195 -------DRIVRIDPETGKVVGWID  212 (264)
T ss_dssp             -------SEEEEEETTT-BEEEEEE
T ss_pred             -------CeEEEEeCCCCeEEEEEE
Confidence                   259999999998876543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=80.64  E-value=18  Score=38.40  Aligned_cols=153  Identities=11%  Similarity=0.151  Sum_probs=80.5

Q ss_pred             eeCcCCCEEEEE---eCCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc
Q 004971          425 SFSPKGDRIAFV---EFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV  500 (721)
Q Consensus       425 ~~SpDG~~la~~---~~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~  500 (721)
                      -.+.+.+.|+|.   ....||.+|+.-|+...-- .....-+.|.|+-+.--++..+..  ..-....|++++..-.+  
T Consensus       473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtl--vGlS~~svFrIDPR~~g--  548 (776)
T COG5167         473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTL--VGLSDYSVFRIDPRARG--  548 (776)
T ss_pred             eeecCCcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceE--EeecccceEEecccccC--
Confidence            444445566666   3567999999888753322 111124455554332111110000  00123345666543220  


Q ss_pred             cceEEcccCC---CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971          501 SAVRRLTTNG---KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       501 ~~~~~l~~~~---~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~  577 (721)
                      .++.......   ....+..-.-.+-+|+.++.   .++|.++|--+...  -..|+.-...+..+..+.+|++|+.+..
T Consensus       549 NKi~v~esKdY~tKn~Fss~~tTesGyIa~as~---kGDirLyDRig~rA--KtalP~lG~aIk~idvta~Gk~ilaTCk  623 (776)
T COG5167         549 NKIKVVESKDYKTKNKFSSGMTTESGYIAAASR---KGDIRLYDRIGKRA--KTALPGLGDAIKHIDVTANGKHILATCK  623 (776)
T ss_pred             CceeeeeehhccccccccccccccCceEEEecC---CCceeeehhhcchh--hhcCcccccceeeeEeecCCcEEEEeec
Confidence            1222222211   12222333344568888887   67899988765442  2334443445678889999999988876


Q ss_pred             cCCCCCCceeEEEEecC
Q 004971          578 RDNPGSGSFEMYLIHPN  594 (721)
Q Consensus       578 ~~~~~~~~~~i~~~d~~  594 (721)
                      .        .|.+.|+.
T Consensus       624 ~--------yllL~d~~  632 (776)
T COG5167         624 N--------YLLLTDVP  632 (776)
T ss_pred             c--------eEEEEecc
Confidence            5        67777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	721
2w8b_A	409	Crystal Structure Of Processed Tolb In Complex With		2e-11
2w8b_B	409	Crystal Structure Of Processed Tolb In Complex With		2e-11
1c5k_A	439	The Structure Of Tolb, An Essential Component Of Th		2e-11
3iax_A	438	The Crystal Structure Of The Tolb Box Of Colicin A		2e-11
2hqs_A	415	Crystal Structure Of TolbPAL COMPLEX Length = 415		2e-11
1crz_A	403	Crystal Structure Of The E. Coli Tolb Protein Lengt		5e-10
2ojh_A	297	The Structure Of Putative Tolb From Agrobacterium T		2e-07

>pdb|2W8B|A Chain A, Crystal Structure Of Processed Tolb In Complex With Pal Length = 409

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 9/129 (6%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
           AVR++ +  ++N  P+ SPDG  + F  ++TG  NLY+MD   G+   + ++T+G  ++T
Sbjct: 214 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNT 270
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
              W PD + +AF SD+    +G  ++Y ++ NG   +++   GS  +      S DGK 
Sbjct: 271 EPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRITWEGSQNQDAD--VSSDGKF 324
Query: 622 IVFTSDYGG 630
           +V  S  GG
Sbjct: 325 MVMVSSNGG 333

>pdb|2W8B|B Chain B, Crystal Structure Of Processed Tolb In Complex With Pal Length = 409

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 9/129 (6%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
           AVR++ +  ++N  P+ SPDG  + F  ++TG  NLY+MD   G+   + ++T+G  ++T
Sbjct: 214 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNT 270
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
              W PD + +AF SD+    +G  ++Y ++ NG   +++   GS  +      S DGK 
Sbjct: 271 EPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRITWEGSQNQDAD--VSSDGKF 324
Query: 622 IVFTSDYGG 630
           +V  S  GG
Sbjct: 325 MVMVSSNGG 333

>pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Component Of The Tol- Dependent Translocation System And Its Interactions With The Translocation Domain Of Colicin E9 Length = 439

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 9/129 (6%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
           AVR++ +  ++N  P+ SPDG  + F  ++TG  NLY+MD   G+   + ++T+G  ++T
Sbjct: 236 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNT 292
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
              W PD + +AF SD+    +G  ++Y ++ NG   +++   GS  +      S DGK 
Sbjct: 293 EPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRITWEGSQNQDAD--VSSDGKF 346
Query: 622 IVFTSDYGG 630
           +V  S  GG
Sbjct: 347 MVMVSSNGG 355

>pdb|3IAX|A Chain A, The Crystal Structure Of The Tolb Box Of Colicin A In Complex With Tolb Reveals Important Differences In The Recruitment Of The Common Tolb Translocation Portal Used By Group A Colicins Length = 438

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 9/129 (6%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
           AVR++ +  ++N  P+ SPDG  + F  ++TG  NLY+MD   G+   + ++T+G  ++T
Sbjct: 235 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNT 291
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
              W PD + +AF SD+    +G  ++Y ++ NG   +++   GS  +      S DGK 
Sbjct: 292 EPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRITWEGSQNQDAD--VSSDGKF 345
Query: 622 IVFTSDYGG 630
           +V  S  GG
Sbjct: 346 MVMVSSNGG 354

>pdb|2HQS|A Chain A, Crystal Structure Of TolbPAL COMPLEX Length = 415

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 9/129 (6%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
           AVR++ +  ++N  P+ SPDG  + F  ++TG  NLY+MD   G+   + ++T+G  ++T
Sbjct: 214 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNT 270
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
              W PD + +AF SD+    +G  ++Y ++ NG   +++   GS  +      S DGK 
Sbjct: 271 EPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRITWEGSQNQDAD--VSSDGKF 324
Query: 622 IVFTSDYGG 630
           +V  S  GG
Sbjct: 325 MVMVSSNGG 333

>pdb|1CRZ|A Chain A, Crystal Structure Of The E. Coli Tolb Protein Length = 403

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
           AVR++ +  ++N  P+ SPDG  + F  ++TG  NLY+ D   G+   + ++T+G  ++T
Sbjct: 208 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVXDLASGQ---IRQVTDGRSNNT 264
Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
              W PD + +AF SD+    +G  ++Y ++ NG   +++   GS  +      S DGK 
Sbjct: 265 EPTWFPDSQNLAFTSDQ----AGRPQVYKVNINGGAPQRITWEGSQNQDAD--VSSDGKF 318
Query: 622 IVFTSDYGG 630
            V  S  GG
Sbjct: 319 XVXVSSNGG 327

>pdb|2OJH|A Chain A, The Structure Of Putative Tolb From Agrobacterium Tumefaciens Length = 297

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
           RLT     N  P  SPDG+WI F S+RTG   ++ +  +G     + R+T+  + D   +
Sbjct: 167 RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQXQIWRVRVDGSS---VERITDSAYGDWFPH 223
Query: 565 WSPDGEWIAFASDR----DNPGSGSFEMYLIHPNGTGLRKLIQS-GSAGRANHPYFSPDG 619
            SP G+ + F S      D+P      + L   +G  +  L    G  G  N P +SPDG
Sbjct: 224 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLXDXDGGNVETLFDLFGGQGTXNSPNWSPDG 283
Query: 620 KSIVFT 625
               + 
Sbjct: 284 DEFAYV 289

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	721
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	2e-54
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	5e-46
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	8e-43
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	3e-31
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	2e-07
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	4e-40
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	8e-20
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	6e-10
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	4e-06
1k32_A	1045	Tricorn protease; protein degradation, substrate g	9e-27
1k32_A	1045	Tricorn protease; protein degradation, substrate g	4e-23
1k32_A	1045	Tricorn protease; protein degradation, substrate g	1e-16
1k32_A	1045	Tricorn protease; protein degradation, substrate g	1e-10
1k32_A	1045	Tricorn protease; protein degradation, substrate g	2e-07
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	4e-20
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	8e-19
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	3e-17
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	1e-14
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	5e-04
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	1e-18
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	2e-17
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	9e-15
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	7e-13
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	5e-18
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	2e-15
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	6e-12
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	1e-08
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	2e-06
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	1e-13
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	1e-12
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	3e-12
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	3e-10
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	5e-09
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	6e-10
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	3e-09
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	4e-08
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	2e-09
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	1e-06
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	3e-08
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	3e-06
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	6e-06
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	5e-08
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	2e-07
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	7e-07
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	2e-04
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	9e-05
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	1e-04
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-04

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Length = 297

 Score =  188 bits (479), Expect = 2e-54
 Identities = 58/311 (18%), Positives = 105/311 (33%), Gaps = 48/311 (15%)

Query: 378 SPDSSRVGYHKCRGGSTR-----EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR 432
           S   +R+         +             ++   ++P    +        P++SP G  
Sbjct: 6   STLHTRLSTGPGGSMRSSIEIFNIRTRKMRVV--WQTPELFEA--------PNWSPDGKY 55

Query: 433 IAFVEFPGVYVVNSDGSNRRQVYFKNAF-----STVWDPVREAVVYTSGGPEFASESSEV 487
           +       +Y ++  G    +                 P       +           E 
Sbjct: 56  LLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISD--------KVEF 107

Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
              +I +    G     RL T    + +   SPDGK   +   R    ++Y MD + G  
Sbjct: 108 GKSAIYLLPSTG--GTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV- 164

Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
               RLT G   +   ++SPDG WI F S R    +G  +++ +  +G+ + ++  S   
Sbjct: 165 --ETRLTHGEGRNDGPDYSPDGRWIYFNSSR----TGQMQIWRVRVDGSSVERITDSA-- 216

Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
                P+ SP G  +VF S    +   P     +      +  + +DG +++ L      
Sbjct: 217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR------VQLMDMDGGNVETLFDLFGG 270

Query: 668 DGT---PAWGP 675
            GT   P W P
Sbjct: 271 QGTMNSPNWSP 281

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Length = 297

 Score =  165 bits (419), Expect = 5e-46
 Identities = 69/309 (22%), Positives = 112/309 (36%), Gaps = 41/309 (13%)

Query: 337 VATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRE 396
           ++T    S    IE+F++   K   + +          P  SPD   +           E
Sbjct: 12  LSTGPGGSMRSSIEIFNIRTRKMRVVWQTPEL---FEAPNWSPDGKYLLL-------NSE 61

Query: 397 DGNNQLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVE-----FPGVYVVNSDGSN 450
               +L L    SP   D        +    SP G   A  +        +Y++ S G  
Sbjct: 62  GLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT 121

Query: 451 RRQVYFK-NAFSTVWDPVREAVVYTS---GGPEFASESSEVDIISINVDDVDGVSAVRRL 506
            R +     ++   W P  ++  Y                 DI S+++D         RL
Sbjct: 122 PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVF---------DIYSMDIDS----GVETRL 168

Query: 507 TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS 566
           T     N  P  SPDG+WI F S+RTG   ++ +  +G     + R+T+  + D   + S
Sbjct: 169 THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS---SVERITDSAYGDWFPHPS 225

Query: 567 PDGEWIAFASDR----DNPGSGSFEMYLIHPNGTGLRKLIQS-GSAGRANHPYFSPDGKS 621
           P G+ + F S      D+P      + L+  +G  +  L    G  G  N P +SPDG  
Sbjct: 226 PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDE 285

Query: 622 IVFTSDYGG 630
             +   +  
Sbjct: 286 FAYVRYFPV 294

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Length = 297

 Score =  156 bits (395), Expect = 8e-43
 Identities = 54/260 (20%), Positives = 93/260 (35%), Gaps = 42/260 (16%)

Query: 424 PSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNA--FSTVWDPVREAVVYTSGG 477
              S    R++          + + N      R V+       +  W P  + ++  S G
Sbjct: 3   MRQSTLHTRLSTGPGGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEG 62

Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF-RSTRTGYKN 536
                      +  +++        V        NN    +SPDG           G   
Sbjct: 63  ----------LLYRLSLAGDPSPEKVDTGFATICNND-HGISPDGALYAISDKVEFGKSA 111

Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
           +Y++ + GG      RL           WSPDG+   +   RD      F++Y +  +  
Sbjct: 112 IYLLPSTGGT----PRLMTKNLPSYWHGWSPDGKSFTYCGIRD----QVFDIYSMDIDSG 163

Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
              +L      GR + P +SPDG+ I F S   G          Q Q    I+++++DGS
Sbjct: 164 VETRLTHGE--GRNDGPDYSPDGRWIYFNSSRTG----------QMQ----IWRVRVDGS 207

Query: 657 DLKRLTQNSFEDGTPAWGPR 676
            ++R+T +++ D  P   P 
Sbjct: 208 SVERITDSAYGDWFPHPSPS 227

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Length = 297

 Score =  123 bits (310), Expect = 3e-31
 Identities = 53/289 (18%), Positives = 96/289 (33%), Gaps = 42/289 (14%)

Query: 312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTH 371
           ++ V         P  SP + K++ +      +S   +    L  +   E          
Sbjct: 34  MRVVWQTPELFEAPNWSP-DGKYLLL------NSEGLLYRLSLAGDPSPEKVDTGFATIC 86

Query: 372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGD 431
           + +  ISPD +             E G + + L       P +        +  +SP G 
Sbjct: 87  NNDHGISPDGALYAI-----SDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGK 141

Query: 432 RIAFVEF----PGVYVVNSDGSNRRQVYFKNAFST--VWDPVREAVVYTSGGPEFASESS 485
              +         +Y ++ D     ++      +    + P    + + S      S + 
Sbjct: 142 SFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNS------SRTG 195

Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG--------YKNL 537
           ++ I  + VD     S+V R+T +   + FP  SP G  +VF S               +
Sbjct: 196 QMQIWRVRVDG----SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRV 251

Query: 538 YIMDAEGGEGYGLHRLTEGPWSDTMCN---WSPDGEWIAFASDRDNPGS 583
            +MD +GG    +  L +        N   WSPDG+  A+       GS
Sbjct: 252 QLMDMDGG---NVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFPVEGS 297

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Length = 297

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 44/320 (13%), Positives = 83/320 (25%), Gaps = 61/320 (19%)

Query: 108 QLIYVTERNGTSNIY-YDAVYYDTRRNTRSRTALE--------QHGAEVSTRV--QVPLL 156
           +L      +  S+I  ++      R   ++    E        ++    S  +  ++ L 
Sbjct: 11  RLSTGPGGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLA 70

Query: 157 DLNEVNGGVISMKDKPILS------GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRR 210
                                    G         E  G        +Y      G  R 
Sbjct: 71  GDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEF-GKSA-----IYLLPSTGGTPRL 124

Query: 211 LTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGG 270
           +T      +    SP GK            D        DIY  +  D     ++    G
Sbjct: 125 MTKNLP-SYWHGWSPDGKSFTYCGI----RDQ-----VFDIYS-MDIDSGVETRLTHGEG 173

Query: 271 W---PCW-VDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPA 326
               P +  D   ++F+  S     + +++        V  +  S++R+T      + P 
Sbjct: 174 RNDGPDYSPDGRWIYFN--SSRTGQMQIWR--------VRVDGSSVERITDSAYGDWFPH 223

Query: 327 TSPGNNKFIAVATRR------PTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD 380
            SP +   +   +        P      ++L D+       L      +    +P  SPD
Sbjct: 224 PSP-SGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPD 282

Query: 381 SSRVGYHKCRGGSTREDGNN 400
                Y              
Sbjct: 283 GDEFAY------VRYFPVEG 296

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Length = 415

 Score =  151 bits (384), Expect = 4e-40
 Identities = 68/369 (18%), Positives = 126/369 (34%), Gaps = 75/369 (20%)

Query: 339 TRRPTSSYR-HIELFDLVKNKFIELT--RFVSPKT------HHLNPFI--------SPDS 381
           T  P  SY    +L D        L    +   K       H  +  +            
Sbjct: 84  TPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR 143

Query: 382 SRVGYHKCRGGSTRE--------DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRI 433
           +R+ Y     G            DG NQ ++   +SP P +S        P++SP G ++
Sbjct: 144 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVV--HRSPQPLMS--------PAWSPDGSKL 193

Query: 434 AFVEF----PGVYVVNSDGSNRRQVYFK--NAFSTVWDPVREAVVYTSGGPEFASESSEV 487
           A+V F      + +        RQV     +  +  + P    + +        S++  +
Sbjct: 194 AYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFAL------SKTGSL 247

Query: 488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG 547
           ++  +++        +R++T    NN  P+  PD + + F S + G   +Y ++  GG  
Sbjct: 248 NLYVMDLAS----GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA- 302

Query: 548 YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA 607
               R+T     +   + S DG+++   S       G   +        G++ L    S 
Sbjct: 303 --PQRITWEGSQNQDADVSSDGKFMVMVSSNG----GQQHIAKQDLATGGVQVL---SST 353

Query: 608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
                P  +P+G  ++++S  G                  +  +  DG    RL     +
Sbjct: 354 FLDETPSLAPNGTMVIYSSSQGM--------------GSVLNLVSTDGRFKARLPATDGQ 399

Query: 668 DGTPAWGPR 676
              PAW P 
Sbjct: 400 VKFPAWSPY 408

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Length = 415

 Score = 91.4 bits (227), Expect = 8e-20
 Identities = 47/269 (17%), Positives = 90/269 (33%), Gaps = 33/269 (12%)

Query: 313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHH 372
             V        +PA SP  +K   V           + +  L      ++  F     H+
Sbjct: 172 FVVHRSPQPLMSPAWSPDGSKLAYVTFES---GRSALVIQTLANGAVRQVASF---PRHN 225

Query: 373 LNPFISPDSSRVGYHKCRGGST---REDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPK 429
             P  SPD S++ +   + GS      D  +  + +       +          P++ P 
Sbjct: 226 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTE--------PTWFPD 277

Query: 430 GDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESS 485
              +AF         VY VN +G   +++ ++ + +            +S G      SS
Sbjct: 278 SQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-------DADVSSDGKFMVMVSS 330

Query: 486 EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
                 I   D+     V+ L+ +   +  PS++P+G  +++ S++     L ++  +G 
Sbjct: 331 NGGQQHIAKQDLAT-GGVQVLS-STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388

Query: 546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574
                 RL           WSP       
Sbjct: 389 F---KARLPATDGQVKFPAWSPYLHHHHH 414

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Length = 415

 Score = 61.0 bits (148), Expect = 6e-10
 Identities = 54/269 (20%), Positives = 91/269 (33%), Gaps = 51/269 (18%)

Query: 175 SGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVAS 234
            G  L YV+         +  +A+    L  G  R++  +   + +PA SP G   A A 
Sbjct: 189 DGSKLAYVTF-------ESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFAL 241

Query: 235 YGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGW---PCWV-DESTLFFHRKSEEDD 290
                  G     S ++Y+ +     Q  ++ +       P W  D   L F   S++  
Sbjct: 242 S----KTG-----SLNLYV-MDLASGQIRQVTDGRSNNTEPTWFPDSQNLAF--TSDQAG 289

Query: 291 WISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE 350
                    PQ   V+    + QR+T  G        S  + KF+ + +        HI 
Sbjct: 290 --------RPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQ--HIA 338

Query: 351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI--- 407
             DL       L+           P ++P+ + V Y      S+ +   + L L +    
Sbjct: 339 KQDLATGGVQVLSS----TFLDETPSLAPNGTMVIY------SSSQGMGSVLNLVSTDGR 388

Query: 408 -KSPLPDISLFRFDGSFPSFSPKGDRIAF 435
            K+ LP          FP++SP       
Sbjct: 389 FKARLPATDG---QVKFPAWSPYLHHHHH 414

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Length = 415

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 41/235 (17%), Positives = 74/235 (31%), Gaps = 30/235 (12%)

Query: 300 PQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRP-TSSYRHIELFDLVKNK 358
               + +  + ++++V     H   PA SP  +K     ++    + Y    + DL   +
Sbjct: 203 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY----VMDLASGQ 258

Query: 359 FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLF 417
             ++T   S  T    P   PDS  + +   + G        Q+   NI    P  I+  
Sbjct: 259 IRQVTDGRSNNT---EPTWFPDSQNLAFTSDQAGRP------QVYKVNINGGAPQRITWE 309

Query: 418 RFDGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYF-KNAFSTVWDPVREAVV 472
                    S  G  +  V   G    +   +      + +       +    P    V+
Sbjct: 310 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVI 369

Query: 473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527
           Y+S         S ++++S      DG     RL        FP+ SP       
Sbjct: 370 YSSS----QGMGSVLNLVST-----DG-RFKARLPATDGQVKFPAWSPYLHHHHH 414

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045

 Score =  116 bits (290), Expect = 9e-27
 Identities = 61/499 (12%), Positives = 124/499 (24%), Gaps = 73/499 (14%)

Query: 198 VYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIF--- 254
           ++  +LK+G TR++        +    P G+  A+        +        D+Y +   
Sbjct: 35  LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNT------ADLYFYNGE 88

Query: 255 ------LTRDGTQRVKIVENGGWPCWV-DESTLFF-HRKSEEDDWISVYKVILPQTGLVS 306
                 +T    +            +  D + +              +Y+V         
Sbjct: 89  NGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRV--------- 139

Query: 307 TESVSIQRVTPPGLHAFTPATSPGNNKFIAV------ATRRPTSSYRHIELFDLVKNKFI 360
                     P  L   T        + I          +      R     ++    F 
Sbjct: 140 --ENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK 197

Query: 361 ELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFD 420
           ++       TH  +P I     R+ +       T  DG  Q+   ++            D
Sbjct: 198 KIVDM---STHVSSPVIVGH--RIYF------ITDIDGFGQIYSTDLDGKDLRKHTSFTD 246

Query: 421 GSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEF 480
                 +  G RI F +   +Y+ N D     ++          +   + ++        
Sbjct: 247 YYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEI-----GDLESPEDRIISIPSKFAE 301

Query: 481 ASESSEVDIISINVDD----VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN 536
                + D+I+          D                +     D K      TR G   
Sbjct: 302 DFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFL 361

Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT 596
                  G       +  E   +        +G++   A+DR        E+  +     
Sbjct: 362 GIYDYRTGKA----EKFEENLGNVFAMGVDRNGKFAVVANDRF-------EIMTVDLETG 410

Query: 597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS 656
               + +S           S + + I +                       I    ++G 
Sbjct: 411 KPTVIERSRE-AMITDFTISDNSRFIAY-------GFPLKHGETDGYVMQAIHVYDMEGR 462

Query: 657 DLKRLTQNSFEDGTPAWGP 675
            +   T  +  D  PA+  
Sbjct: 463 KIFAATTENSHDYAPAFDA 481

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045

 Score =  104 bits (260), Expect = 4e-23
 Identities = 39/193 (20%), Positives = 65/193 (33%), Gaps = 25/193 (12%)

Query: 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN---LYIMDAEGGEGYGLHR 552
           D+   S  R++ +N          PDG+ I  R  R    N   LY  + E GE   + R
Sbjct: 39  DLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE---IKR 94

Query: 553 LTEGPWSDT-------MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG 605
           +T      T       +  + PDG  I   +D   P S    +Y +  +G     L    
Sbjct: 95  ITYFSGKSTGRRMFTDVAGFDPDGNLIIS-TDAMQPFSSMTCLYRVENDGINFVPL---- 149

Query: 606 SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNS 665
           + G A       DG+ ++  + +     E                I+++    K++   S
Sbjct: 150 NLGPAT-HILFADGRRVIGRNTF-----ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS 203

Query: 666 FEDGTPAWGPRFI 678
               +P      I
Sbjct: 204 THVSSPVIVGHRI 216

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045

 Score = 83.7 bits (206), Expect = 1e-16
 Identities = 53/480 (11%), Positives = 113/480 (23%), Gaps = 65/480 (13%)

Query: 179 LIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGK-YTAVASYGN 237
           LI  +       P +S   +Y  E        L        +  +   G+      ++  
Sbjct: 120 LIISTDA---MQPFSSMTCLYRVENDGINFVPLNL---GPATHILFADGRRVIGRNTFEL 173

Query: 238 KGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGG--WPCWVDESTLFFHRKSEEDDWISVY 295
             W G        I+I     G  +  +  +     P  V     F    ++ D +  +Y
Sbjct: 174 PHWKGYRGGTRGKIWIE-VNSGAFKKIVDMSTHVSSPVIVGHRIYFI---TDIDGFGQIY 229

Query: 296 KVILPQTGLVSTESVSIQRVTPPGLHAFTPA-TSPGNNKFIAVATRRPTSSYRHIELFDL 354
              L    L    S +                +  G+       T +       IE+ DL
Sbjct: 230 STDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKI----EKIEIGDL 285

Query: 355 VKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRG--GSTREDGNNQLLLENIKSPLP 412
              +     R +S  +     F   D   + +   RG        G   L +        
Sbjct: 286 ESPE----DRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPE------ 334

Query: 413 DISLFRFDGSFPSFSPKGDRIAFV---EFPGVYVVNSDGSNRRQVYFKNAFST--VWDPV 467
                     +                E   + + +       +             D  
Sbjct: 335 -----PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRN 389

Query: 468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527
            +  V  +   E            I   D++         +        ++S + ++I +
Sbjct: 390 GKFAVVANDRFE------------IMTVDLETGKPTVIERSREAMITDFTISDNSRFIAY 437

Query: 528 -------RSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD- 579
                   +     + +++ D EG +   +   T     D    +  D + + + S R  
Sbjct: 438 GFPLKHGETDGYVMQAIHVYDMEGRK---IFAATTENSHDYAPAFDADSKNLYYLSYRSL 494

Query: 580 NPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTP 639
           +P      +       +    +     +                   D   +        
Sbjct: 495 DPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY-DLNDMYKRSSPIN 553

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045

 Score = 64.4 bits (156), Expect = 1e-10
 Identities = 66/487 (13%), Positives = 126/487 (25%), Gaps = 87/487 (17%)

Query: 108 QLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQHGAEVSTRVQVPLLDLNEV---NGG 164
           ++ ++T+ +G   IY                 L +H +      +    D   +    GG
Sbjct: 215 RIYFITDIDGFGQIY---------STDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGG 265

Query: 165 VISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVS 224
            I + +                +                      R+             
Sbjct: 266 SIYIFN---------------PDTEKIEKIEIGDL-----ESPEDRIISIPSKFAEDFSP 305

Query: 225 PSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGG---WPCWVDESTLF 281
             G   A  S G                 F+       V  V       +     ++ + 
Sbjct: 306 LDGDLIAFVSRGQ---------------AFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVA 350

Query: 282 FHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRR 341
           F   + E D++ +Y             +   ++      + F       N KF  VA  R
Sbjct: 351 FIHGTREGDFLGIY----------DYRTGKAEKFEENLGNVFAMGVDR-NGKFAVVANDR 399

Query: 342 PTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGY-HKCRGGSTREDGNN 400
                  I   DL   K   + R  S +    +  IS +S  + Y    + G T      
Sbjct: 400 -----FEIMTVDLETGKPTVIER--SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 452

Query: 401 QLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVE------FPGVYVVNSDGSNRRQ 453
            + + +++       +        P+F      + ++        P   V+N       +
Sbjct: 453 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 512

Query: 454 VYFKNAFSTVWDPVREA-VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKN 512
            +         +P +      TS   E+           INVD        R +     +
Sbjct: 513 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP----GDYRMIIPLESS 568

Query: 513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWI 572
               SV   G++  +         L   D +  +      +TE   + T    S D + +
Sbjct: 569 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK------VTEVKNNLTDLRLSADRKTV 622

Query: 573 AFASDRD 579
               D  
Sbjct: 623 MVRKDDG 629

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 46/377 (12%), Positives = 100/377 (26%), Gaps = 53/377 (14%)

Query: 26  SSSRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDG-------ESVNFNGHFPSP 78
           ++    I+F+          IY            EI   +            F   F   
Sbjct: 253 NTDGRRILFS------KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPL 306

Query: 79  SSPFLSFLLRNQ---------TLIQSPGPQDSRDPPPL----QLIYVTERNGTSNIYYDA 125
               ++F+ R Q          +++ P P   R                R G     YD 
Sbjct: 307 DGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY 366

Query: 126 VYYDTRRNTRSRTALEQ--------HGAEVSTRVQVPLLDLNEVNGGVISMKDKPILS-- 175
                 +   +   +               + R ++  +DL      VI    + +++  
Sbjct: 367 RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF 426

Query: 176 -----GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYT 230
                  ++ Y    ++  T      A++  +++       T     D++PA     K  
Sbjct: 427 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNL 486

Query: 231 AVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDD 290
              S   +  D   + +  +   F     ++   I    G P            ++ E D
Sbjct: 487 YYLS--YRSLDPSPDRVVLN---FSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD 541

Query: 291 WISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE 350
              +YK   P    ++ +    + + P        +                      + 
Sbjct: 542 LNDMYKRSSP----INVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV---LL 594

Query: 351 LFDLVKNKFIELTRFVS 367
            +D+   K  E+   ++
Sbjct: 595 KYDVKTRKVTEVKNNLT 611

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Length = 388

 Score = 92.2 bits (228), Expect = 4e-20
 Identities = 57/362 (15%), Positives = 106/362 (29%), Gaps = 54/362 (14%)

Query: 312 IQRVTP-PGLHAFTPATSPG---NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS 367
           + R+TP                 +   +            +  L DL      +LT    
Sbjct: 23  VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPW--NYYLLDLNTQVATQLTEG-- 78

Query: 368 PKTHHLNPFISPDSSRVGYHKCR------------GGSTREDGNNQLLLENIKSPLPDIS 415
              +    F+SPD   + Y K                   +     +      +      
Sbjct: 79  RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTK 138

Query: 416 LFRFDGSFPSFSPKGDRIAFVEF------PGVYVVNSDGSNRRQVYFKN--AFSTVWDPV 467
           L   +     + P  D   F EF        +  V+        +  +N      ++ P 
Sbjct: 139 LVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPY 198

Query: 468 -REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKN--NAFPSVSPDGKW 524
               V +   GP       ++    + + + DG + +R++ T+ +          PDG  
Sbjct: 199 DDSTVAFCHEGP------HDLVDARMWLINEDG-TNMRKVKTHAEGESCTHEFWVPDGSA 251

Query: 525 IVFRSTRTGYKNLYI--MDAEGGEGYGLHR---LTEGPWSDTMCNWSPDGEWIAFASDRD 579
           +V+ S   G  + +I   D E  E   L      +    +        DG         D
Sbjct: 252 LVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD 311

Query: 580 --NPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN---------HPYFSPDGKSIVFTSDY 628
                     +Y+ +       ++ +  ++ +           HP F+PD K I+FTSD 
Sbjct: 312 SGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV 371

Query: 629 GG 630
            G
Sbjct: 372 HG 373

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Length = 388

 Score = 88.0 bits (217), Expect = 8e-19
 Identities = 52/393 (13%), Positives = 95/393 (24%), Gaps = 77/393 (19%)

Query: 176 GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPY-GVADFSPAVSPSGKYTAVAS 234
           G  L++       G         Y  +L T +  +LT   G   F   +SP         
Sbjct: 47  GSKLLFGG--AFDGPWN-----YYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK 99

Query: 235 YGNKGWDGEVE-MLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTL--FFHRKSEEDDW 291
            G      ++  +    +Y            +  +        E     +      +   
Sbjct: 100 DGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFH 159

Query: 292 ISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRH-IE 350
              +     +   V  ++     +         P   P ++  +A     P       + 
Sbjct: 160 EFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMW 219

Query: 351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR--------EDGNNQL 402
           L +       ++           + F  PD S + Y     GS          E   N+ 
Sbjct: 220 LINEDGTNMRKVKTHAEG-ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQ 278

Query: 403 LLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV----------EFPGVYVVNSDGSNRR 452
           L     + +P  S    +         G                  P +YV N     + 
Sbjct: 279 L-----TSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH 333

Query: 453 QVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKN 512
           +V   +    V++  R+                                           
Sbjct: 334 RVARHDTSWKVFEGDRQV-----------------------------------------T 352

Query: 513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG 545
           +  PS +PD K I+F S   G   LY+      
Sbjct: 353 HPHPSFTPDDKQILFTSDVHGKPALYLATLPES 385

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Length = 388

 Score = 83.3 bits (205), Expect = 3e-17
 Identities = 42/273 (15%), Positives = 81/273 (29%), Gaps = 35/273 (12%)

Query: 424 PSFSPKGDRIAFV----EFPGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSG 476
             F+  G ++ F          Y+++ +     Q+      N F     P  +A+ Y   
Sbjct: 41  KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD 100

Query: 477 GP---------EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527
           G             +   +V    +        S   +L              D K    
Sbjct: 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHE 160

Query: 528 RSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW-IAFASDRDNPGSGSF 586
                    L  +D + GE      + +         + P  +  +AF  +  +      
Sbjct: 161 FYFTKPCCRLMRVDLKTGE---STVILQENQWLGHPIYRPYDDSTVAFCHEGPH-DLVDA 216

Query: 587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYG 646
            M+LI+ +GT +RK+          H ++ PDG ++V+ S   G             P  
Sbjct: 217 RMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKG------------SPDR 264

Query: 647 EIFKIKLDGSDLKRLTQNSFEDGTPAW--GPRF 677
            I+    +  + ++LT         +   G   
Sbjct: 265 FIYSADPETLENRQLTSMPACSHLMSNYDGSLM 297

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Length = 388

 Score = 75.6 bits (185), Expect = 1e-14
 Identities = 36/337 (10%), Positives = 83/337 (24%), Gaps = 52/337 (15%)

Query: 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFR--FDGSFPSFSPKGD 431
               + D S++ +          DG     L ++ + +          +      SP  D
Sbjct: 40  QKCFTRDGSKLLF------GGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD 93

Query: 432 RIAFV-EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDII 490
            + +V +   +  V+        VY        W      V  +        E    D +
Sbjct: 94  ALFYVKDGRNLMRVDLATLEENVVY---QVPAEWVGYGTWVANSDCTKLVGIEIRREDWV 150

Query: 491 SINVDDVDGVS-----------------AVRRLTTNGKNNAFPSVSPDGKW-IVFRSTRT 532
            +                              +    +    P   P     + F     
Sbjct: 151 PLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGP 210

Query: 533 GYKN---LYIMDAEGGEGYGLHRLTEGPWSDTMCN--WSPDGEWIAFASDRDNPGSGSFE 587
                  +++++ +G     + ++      ++  +  W PDG  + + S     GS    
Sbjct: 211 HDLVDARMWLINEDGT---NMRKVKTHAEGESCTHEFWVPDGSALVYVSYL--KGSPDRF 265

Query: 588 MYLIHPNGTGLRKLIQ----SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQ 643
           +Y   P     R+L      S      +      DG                    ++ +
Sbjct: 266 IYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDS--------GYKIE 317

Query: 644 PYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRP 680
               ++   +      R+ ++           +   P
Sbjct: 318 NDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHP 354

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Length = 388

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 59/461 (12%), Positives = 109/461 (23%), Gaps = 142/461 (30%)

Query: 44  FDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPS-SPFLSFLLRNQTLIQSPGPQDSR 102
           FD Y     D  T A   ++T  +      +F     +                   D  
Sbjct: 11  FDTYQ----DASTGAQVTRLTPPDVTCHRNYFYQKCFTR------------------DGS 48

Query: 103 DPPPLQLIYVTERNGTSNIY----------------------------YDAVYYDTRRNT 134
                +L++    +G  N Y                             DA++Y      
Sbjct: 49  -----KLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN 103

Query: 135 RSRTALEQHGAEVSTRVQV-----PLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPG 189
             R  L      V  +V            N     ++ ++ +         +   HE   
Sbjct: 104 LMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYF 163

Query: 190 TPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLST 249
           T       +   +LKTG +  +         P   P    T          +G  +++  
Sbjct: 164 TKPCCR--LMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFC-----HEGPHDLVDA 216

Query: 250 DIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTES 309
            +++ +  DGT   K+  +                                         
Sbjct: 217 RMWL-INEDGTNMRKVKTH----------------------------------------- 234

Query: 310 VSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPK 369
                    G         P +   +   +    S  R I   D    +  +LT   +  
Sbjct: 235 -------AEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACS 286

Query: 370 THHLNPF---ISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS------------PLPDI 414
               N     +  D S            + + +  L + N+K+                 
Sbjct: 287 HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFE 346

Query: 415 SLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY 455
              +     PSF+P   +I F          SD   +  +Y
Sbjct: 347 GDRQVTHPHPSFTPDDKQILFT---------SDVHGKPALY 378

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Length = 396

 Score = 88.1 bits (217), Expect = 1e-18
 Identities = 58/367 (15%), Positives = 113/367 (30%), Gaps = 60/367 (16%)

Query: 310 VSIQRVTP-PGLHAFTPATSPG---NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF 365
           V + R+TP   +             + K +  A        R+  L +L   + ++LT  
Sbjct: 21  VKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDF--DGNRNYYLLNLETQQAVQLTEG 78

Query: 366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTRED------------GNNQLLLENIKSPLPD 413
                +    FIS D     Y K      + D                       +    
Sbjct: 79  --KGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDC 136

Query: 414 ISLFRFDGSFPSFSPKGDRIAFVEFPG------VYVVNSDGSNRRQVYFKNAFST--VWD 465
             L   +     + P      F EF        +  V+ +      ++   A+    ++ 
Sbjct: 137 TKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR 196

Query: 466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT--TNGKNNAFPSVSPDGK 523
           P  ++ V            + + ++     + DG S VR++     G++       PDG 
Sbjct: 197 PFDDSTVGFCHEGPHDLVDARMWLV-----NEDG-SNVRKIKEHAEGESCTHEFWIPDGS 250

Query: 524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN-----------WSPDGEWI 572
            + + S   G  +  I  A          +   P S  M N            +P     
Sbjct: 251 AMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGSLMVGDGCDAPVDVAD 310

Query: 573 AFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN---------HPYFSPDGKSIV 623
           A + + +        +Y+++      +KL +  ++             HP F+P+   ++
Sbjct: 311 ADSYNIE----NDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVL 366

Query: 624 FTSDYGG 630
           FTSD+ G
Sbjct: 367 FTSDFEG 373

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Length = 396

 Score = 83.9 bits (206), Expect = 2e-17
 Identities = 42/276 (15%), Positives = 77/276 (27%), Gaps = 19/276 (6%)

Query: 424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSG 476
             F+  G ++ F          Y++N +     Q+      N F         A  Y   
Sbjct: 41  KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKN 100

Query: 477 GPEFA----SESSEVDIISINVDDVDGVSA---VRRLTTNGKNNAFPSVSPDGKWIVFRS 529
                        E  I +++ +     +           G         P   W  F  
Sbjct: 101 ELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAE 160

Query: 530 TRTGYKN--LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFE 587
                    L  +D E GE   L  + +         + P  +                 
Sbjct: 161 FYHTNPTCRLIKVDIETGE---LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDAR 217

Query: 588 MYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGE 647
           M+L++ +G+ +RK+ +        H ++ PDG ++ + S + G +   I   +      E
Sbjct: 218 MWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENE 277

Query: 648 IFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDV 683
              +    S L      S   G     P  +   D 
Sbjct: 278 EVMVMPPCSHLMSNFDGSLMVGDGCDAPVDVADADS 313

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Length = 396

 Score = 75.8 bits (185), Expect = 9e-15
 Identities = 54/395 (13%), Positives = 101/395 (25%), Gaps = 79/395 (20%)

Query: 176 GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPY-GVADFSPAVSPSGKYTAVAS 234
           G+ L++                 Y   L+T    +LT   G   F   +S   +      
Sbjct: 47  GKKLLFAG-------DFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVK 99

Query: 235 YGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISV 294
                   ++E L   +   +  +          G W    D + L      + D     
Sbjct: 100 NELNLMKVDLETLEEQVIYTVDEEWKG------YGTWVANSDCTKLVGIEILKRDWQPLT 153

Query: 295 YKVILPQTG---------LVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSS 345
                 +            V  E+  ++ +         P   P ++  +      P   
Sbjct: 154 SWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDL 213

Query: 346 YRH-IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR--------E 396
               + L +   +   ++           + F  PD S + Y     G T         E
Sbjct: 214 VDARMWLVNEDGSNVRKIKEHAE-GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE 272

Query: 397 DGNNQLLLE----NIKSPLPDISLFRFDGSF-PSFSPKGDRIAFVEFPGVYVVNSDGSNR 451
              N+ ++     +      D SL   DG   P      D       P +YV+N+   + 
Sbjct: 273 TLENEEVMVMPPCSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332

Query: 452 RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK 511
           +++   +    V D                                              
Sbjct: 333 QKLCKHSTSWDVLD-----------------------------------------GDRQI 351

Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546
            +  PS +P+   ++F S   G   +YI D     
Sbjct: 352 THPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Length = 396

 Score = 70.0 bits (170), Expect = 7e-13
 Identities = 39/328 (11%), Positives = 92/328 (28%), Gaps = 34/328 (10%)

Query: 374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSF-SPKGD 431
               + D  ++ +      +   DGN    L N+++     ++  + D +F  F S    
Sbjct: 40  QKCFTQDGKKLLF------AGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER 93

Query: 432 RIAFV-EFPGVYVVNSDGSNRRQVYF----KNAFSTVWDPVREAVVYTSGGPE------- 479
              +V     +  V+ +    + +Y        + T         +      +       
Sbjct: 94  AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT 153

Query: 480 ----FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
               FA          +   D++                      D   + F        
Sbjct: 154 SWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDL 213

Query: 536 N---LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH 592
               +++++ +G     +    EG        W PDG  +A+ S     G     +Y  +
Sbjct: 214 VDARMWLVNEDGSNVRKIKEHAEGESCTHEF-WIPDGSAMAYVSYFK--GQTDRVIYKAN 270

Query: 593 PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK 652
           P  T   + +        +H   + DG  +V       +     +  +  +    ++ + 
Sbjct: 271 P-ETLENEEV--MVMPPCSHLMSNFDGSLMVGDGCDAPVDV-ADADSYNIENDPFLYVLN 326

Query: 653 LDGSDLKRLTQNSFEDGTPAWGPRFIRP 680
                 ++L ++S          +   P
Sbjct: 327 TKAKSAQKLCKHSTSWDVLDGDRQITHP 354

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347

 Score = 85.3 bits (211), Expect = 5e-18
 Identities = 40/280 (14%), Positives = 77/280 (27%), Gaps = 36/280 (12%)

Query: 377 ISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV 436
                  V Y   +         N +++EN+K+   +   F  + + P  SP G +IAF+
Sbjct: 20  PRTKGELVAYVLTKANLKDNKYENTIVIENLKN---NARRFIENATMPRISPDGKKIAFM 76

Query: 437 ------EFPGVYVVNSDGSNRRQV-YFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDI 489
                 +   ++V + +  + +++   KN  S  W+     ++          +    D 
Sbjct: 77  RANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136

Query: 490 ISINVDD-------------VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG--- 533
           +    DD              D  S            +      D   +           
Sbjct: 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDKIVVNVPHREIIPQY 196

Query: 534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP 593
           +K   I   E G+     ++ E            DGE I     +      S    L   
Sbjct: 197 FKFWDIYIWEDGK---EEKMFEKVSFYA---VDSDGERILLYG-KPEKKYMSEHNKLYIY 249

Query: 594 NGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA 633
           +G  +  ++                   + FT    G   
Sbjct: 250 DGKEVMGILDEVD---RGVGQAKIKDGKVYFTLFEEGSVN 286

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 20/175 (11%), Positives = 50/175 (28%), Gaps = 29/175 (16%)

Query: 517 SVSPDGKWIVFRSTRTGYK------NLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE 570
                G+ + +  T+   K       + I + +        R  E     TM   SPDG+
Sbjct: 19  DPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNA----RRFIEN---ATMPRISPDGK 71

Query: 571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
            IAF    +       E+++        +K++++ +        ++ D + ++       
Sbjct: 72  KIAFMRANE--EKKVSEIWVADLETLSSKKILEAKN---IRSLEWNEDSRKLLIVGFKRR 126

Query: 631 ISAEPIS----------TPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGP 675
              + I                      +    +  ++    +      +  W  
Sbjct: 127 EDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPR-FSSGIWHR 180

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347

 Score = 66.8 bits (163), Expect = 6e-12
 Identities = 25/198 (12%), Positives = 54/198 (27%), Gaps = 40/198 (20%)

Query: 497 VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN--LYIMDAEGGEGYGLHRLT 554
            +  +  RR   N      P +SPDGK I F       K   +++ D E        ++ 
Sbjct: 48  ENLKNNARRFIENATM---PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK---KIL 101

Query: 555 EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH--PNGTGL-------------- 598
           E     ++  W+ D   +     +            +    +  G               
Sbjct: 102 EAKNIRSL-EWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160

Query: 599 -RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD 657
             ++I+     R +   +  D   +                  QY  + +I+    +   
Sbjct: 161 SEEVIEEFEKPRFSSGIWHRDKIVVNVPHREIIP---------QYFKFWDIY--IWEDGK 209

Query: 658 LKRLTQNSFEDGTPAWGP 675
            +++ +        A   
Sbjct: 210 EEKMFEK---VSFYAVDS 224

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 47/384 (12%), Positives = 87/384 (22%), Gaps = 89/384 (23%)

Query: 223 VSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCW-VDESTLF 281
               G+  A   Y     + +       I I   ++  +R   +EN   P    D   + 
Sbjct: 20  PRTKGELVA---YVLTKANLKDNKYENTIVIENLKNNARRF--IENATMPRISPDGKKIA 74

Query: 282 FHRKSEEDDWISVYKVILPQTG----LVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAV 337
           F R +EE     ++ V   +T     ++  +++                     ++    
Sbjct: 75  FMRANEEKKVSEIW-VADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIF 133

Query: 338 ATRRPTSS---------YRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHK 388
               P                 +FD    + IE       K    +     D   V    
Sbjct: 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF----EKPRFSSGIWHRDKIVVNV-- 187

Query: 389 CRGGSTREDGNNQLLLENIKS-PLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSD 447
                 RE         +I               SF +    G+RI              
Sbjct: 188 ----PHREIIPQYFKFWDIYIWEDGKEEKMFEKVSFYAVDSDGERILLY----------- 232

Query: 448 GSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT 507
           G   ++   ++                                   +   DG   V  + 
Sbjct: 233 GKPEKKYMSEH---------------------------------NKLYIYDG-KEVMGIL 258

Query: 508 TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP 567
                    +       + F     G  NLYI D E      +  + +G        +  
Sbjct: 259 DEVDRGVGQAK-IKDGKVYFTLFEEGSVNLYIWDGE------IKPIAKGRHWIM--GFDV 309

Query: 568 DGEWIAFASDRDNPGSGSFEMYLI 591
           D   +              E++  
Sbjct: 310 DEIVVYLKETATRLR----ELFTW 329

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 51/403 (12%), Positives = 89/403 (22%), Gaps = 105/403 (26%)

Query: 172 PILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTA 231
           P   GE + YV T  N    +     +    LK    R +         P +SP GK  A
Sbjct: 20  PRTKGELVAYVLTKANLKDNK-YENTIVIENLKNNARRFIEN----ATMPRISPDGKKIA 74

Query: 232 VASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDW 291
                 +          ++I++    +     KI+E                        
Sbjct: 75  FMRANEEKK-------VSEIWV-ADLETLSSKKILE------------------------ 102

Query: 292 ISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSS------ 345
                           +++                     ++        P         
Sbjct: 103 ---------------AKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFF 147

Query: 346 ---YRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQL 402
                   +FD    + IE       K    +     D   V          RE      
Sbjct: 148 DGEKTTFWIFDTESEEVIEEF----EKPRFSSGIWHRDKIVVNV------PHREIIPQYF 197

Query: 403 LLENIKS-PLPDISLFRFDGSFPSFSPKGDRIAFV-------EFPGVYVVNSDGSNRRQV 454
              +I               SF +    G+RI                +   DG     +
Sbjct: 198 KFWDIYIWEDGKEEKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGI 257

Query: 455 YFK---NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK 511
             +             +        G             S+N+   DG   ++ +     
Sbjct: 258 LDEVDRGVGQAKIKDGKVYFTLFEEG-------------SVNLYIWDG--EIKPIA--KG 300

Query: 512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT 554
            +       D   +  + T T  + L+  D E        +LT
Sbjct: 301 RHWIMGFDVDEIVVYLKETATRLRELFTWDGE------EKQLT 337

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582

 Score = 73.3 bits (180), Expect = 1e-13
 Identities = 33/227 (14%), Positives = 58/227 (25%), Gaps = 22/227 (9%)

Query: 361 ELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFD 420
           E  +      + +          +       G       + L   N   P  +  L    
Sbjct: 55  ETVKLNREPINSVLDPHYGVGRVILVRDVSKG----AEQHALFKVNTSRPGEEQRLEAVK 110

Query: 421 G-SFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGG 477
                S    G+ + F       V +   DG   R++     F  V D          G 
Sbjct: 111 PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDI--------RGD 162

Query: 478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL 537
                       +S+   ++     +R   +   + +  S+SP  K             L
Sbjct: 163 LIAGLGFFGGGRVSLFTSNLSS-GGLRVFDSGEGSFSSASISPGMKVTAG-LETAREARL 220

Query: 538 YIMDAEGGEGYGLHRLTEG-----PWSDTMCNWSPDGEWIAFASDRD 579
             +D   G    L   ++      P + T   + PDG     A    
Sbjct: 221 VTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG 267

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582

 Score = 70.2 bits (172), Expect = 1e-12
 Identities = 27/170 (15%), Positives = 48/170 (28%), Gaps = 25/170 (14%)

Query: 516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFA 575
                DG  ++      G  N Y+ D  GGE   L+R       D        G  I   
Sbjct: 27  LQGVVDGDKLLVVGFSEGSVNAYLYD--GGETVKLNREPINSVLDP---HYGVGRVILVR 81

Query: 576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP 635
                 G+    ++ ++ +  G  + +++    R         G+++VFT          
Sbjct: 82  DVSK--GAEQHALFKVNTSRPGEEQRLEAVKPMRILS--GVDTGEAVVFTGA-------- 129

Query: 636 ISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFIRPVDVEE 685
                       +    LDG  L+ L +              I  +    
Sbjct: 130 --------TEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFG 171

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582

 Score = 68.7 bits (168), Expect = 3e-12
 Identities = 32/222 (14%), Positives = 57/222 (25%), Gaps = 32/222 (14%)

Query: 416 LFRFDGSFPSFSPKGDRIAFV----EFPGVYVVNSDGSNRRQVYF--KNAFSTVWDPVRE 469
           L   +         GD++  V         Y+   DG    ++     N+       V  
Sbjct: 19  LIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLY--DGGETVKLNREPINSVLDPHYGVGR 76

Query: 470 AVVYTS--GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF 527
            ++      G E  +      +  +N           +     K     S    G+ +VF
Sbjct: 77  VILVRDVSKGAEQHA------LFKVNTSRPGE----EQRLEAVKPMRILSGVDTGEAVVF 126

Query: 528 RSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFE 587
                    + +   +GG    L  L   P    + +   D             G G   
Sbjct: 127 TGAT--EDRVALYALDGGG---LRELARLPGFGFVSDIRGDLIAGL-----GFFGGGRVS 176

Query: 588 MYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG 629
           ++  + +  GLR        G  +    SP  K         
Sbjct: 177 LFTSNLSSGGLRVFD--SGEGSFSSASISPGMKVTAGLETAR 216

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662

 Score = 62.5 bits (152), Expect = 3e-10
 Identities = 42/303 (13%), Positives = 82/303 (27%), Gaps = 58/303 (19%)

Query: 408 KSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWD-- 465
           +SP+    +    G        GD + +V            + R  +  + A        
Sbjct: 11  QSPIDAALVASRSGRPACVGAVGDEVWWVAP------RPAEAGRATLVRRRADGAEESAL 64

Query: 466 PVREAV---VYTSGGPEFASESSEVD---IISINVDD---------VDGVSAVRRLTTNG 510
           P    V   V+   G  +A          ++  +  D           G +  R LT   
Sbjct: 65  PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS 124

Query: 511 KNN-----AFPSVSPDGKWIVF-------RSTRTGYKNLYIMDAEGGE---GYGLHRLTE 555
                   A P + P+   +                + L  +  +G        +  L++
Sbjct: 125 AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD 184

Query: 556 GPWSDTMC-NWSPDGEWIAFASDR--DNPGSGSF-EMYLIHPNGTGLRKLIQSGSAGRA- 610
                      SPDG    + +      P  G+  +   +  +G         G    A 
Sbjct: 185 DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAI 244

Query: 611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGT 670
               ++PDG  ++  +D  G              +  + ++        +L +   E   
Sbjct: 245 AQAEWAPDGS-LIVATDRTG--------------WWNLHRVDPATGAATQLCRREEEFAG 289

Query: 671 PAW 673
           P W
Sbjct: 290 PLW 292

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662

 Score = 58.7 bits (142), Expect = 5e-09
 Identities = 46/237 (19%), Positives = 78/237 (32%), Gaps = 33/237 (13%)

Query: 424 PSFSPKGDRIAFVEFP--GVYVVNSD---GSNRRQVYFKNAFST-------VWDPVREAV 471
                 G  + F  F    +Y    D   G+  R +   +A          V  P R  V
Sbjct: 85  VPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEV 144

Query: 472 VYTSGGPEFASESSEVD-IISINVD--DVDGVSAVRRLTTNGKNN-AFPSVSPDGKWIVF 527
              +        S     + ++ +D       SAVR L+ +       P +SPDG+  V+
Sbjct: 145 WCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVW 204

Query: 528 RSTRTGYK-----NLYIMD-AEGGEGYGLHRLTEGP-WSDTMCNWSPDGEWIAFASDRDN 580
            +            L      E G       L  GP  +     W+PDG  I  A+DR  
Sbjct: 205 LAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLI-VATDR-- 261

Query: 581 PGSGSFEMYLIHPNGTGLRKLIQ-----SGSAGRANHPYFSPDGKSIVFTSDYGGIS 632
             +G + ++ + P      +L +     +G        +F+P    ++      G +
Sbjct: 262 --TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAA 316

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 60.1 bits (145), Expect = 6e-10
 Identities = 29/249 (11%), Positives = 67/249 (26%), Gaps = 57/249 (22%)

Query: 420 DGSFPSFSPKGDRIAFVEF-----PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYT 474
                  S  G+ I ++ +       +Y +  DG  ++++  KN +    +       Y 
Sbjct: 105 PDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKI--KNHYLFTCNTSDRYFYYN 162

Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
           +                +   D     +          N +  V  D   + +       
Sbjct: 163 NPKNG-----------QLYRYDTAS-QSEALFYDC---NCYKPVVLDDTNVYYMDVNRDN 207

Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
             +  ++           LTE        +++  G  I +    DNP      + ++  +
Sbjct: 208 A-IVHVNINNPN---PVVLTEANIE----HYNVYGSLIFYQRGGDNPA-----LCVVKND 254

Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
           GTG ++L +            +   + + FT                     + +     
Sbjct: 255 GTGFKELAKG------EFCNINVTSQYVYFTDFVSN----------------KEYCTSTQ 292

Query: 655 GSDLKRLTQ 663
             D  +  Q
Sbjct: 293 NPDTIKALQ 301

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 58.2 bits (140), Expect = 3e-09
 Identities = 30/288 (10%), Positives = 76/288 (26%), Gaps = 77/288 (26%)

Query: 425 SFSPKGDRIAFVEFPG---VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFA 481
            F      + F        +Y +N DGSN  ++   N  +   +  +  V Y     +  
Sbjct: 20  LFCESDGEVFFSNTNDNGRLYAMNIDGSNIHKL--SNDTAMYINADKNYVYYVRNNNQKI 77

Query: 482 SESSEV-----DIISINVD---------------------------DVDGVSAVRRLTTN 509
           +  +        +  I  +                           D    +++ R+  +
Sbjct: 78  TSQTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRID 137

Query: 510 GKN------NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563
           G+       +   + +   ++  + + + G   LY  D         +        +   
Sbjct: 138 GEEKKKIKNHYLFTCNTSDRYFYYNNPKNG--QLYRYDTASQSEALFYD------CNCYK 189

Query: 564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV 623
               D   + +     +       +  ++ N      L ++         +++  G  I 
Sbjct: 190 PVVLDDTNVYYMDVNRD-----NAIVHVNINNPNPVVLTEANI------EHYNVYGSLIF 238

Query: 624 FTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP 671
           +                       +  +K DG+  K L +  F +   
Sbjct: 239 YQRGGDN---------------PALCVVKNDGTGFKELAKGEFCNINV 271

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 54.7 bits (131), Expect = 4e-08
 Identities = 26/171 (15%), Positives = 53/171 (30%), Gaps = 36/171 (21%)

Query: 509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD 568
           N  N            + F +T    + LY M+ +G     +H+L+    +DT    + D
Sbjct: 14  NLYNAGL--FCESDGEVFFSNTNDNGR-LYAMNIDGSN---IHKLS----NDTAMYINAD 63

Query: 569 GEWIAFASDRDN-------PGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS 621
             ++ +  + +               +  I  NG G   L            Y S  G  
Sbjct: 64  KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD------PCIYASLIGNY 117

Query: 622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPA 672
           I +                       +++I++DG + K++  +       +
Sbjct: 118 IYYLHYDTQ-------------TATSLYRIRIDGEEKKKIKNHYLFTCNTS 155

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 39/247 (15%), Positives = 75/247 (30%), Gaps = 54/247 (21%)

Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
           P  +P G R+ F+             N+  ++  +  S     + ++ V   G    + E
Sbjct: 42  PKVAPDGSRVTFLRGK------DSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDE 95

Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPS--VSPDGKWIVFRSTRTGYKNLYIMD 541
                             A R                SPD + ++F         LY+ D
Sbjct: 96  EK----------------ARRERQRIAAMTGIVDYQWSPDAQRLLFPLG----GELYLYD 135

Query: 542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL 601
            +      + +LT G    T    SP G +++F   R+        +++I        +L
Sbjct: 136 LKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRN--------LWVIDLASGRQMQL 187

Query: 602 IQSGSA----GRANHPY-----------FSPDGKSIVFTS-DYGGISAEPISTPHQYQPY 645
              GS     G A               ++PD  +I +   D   +  +       Y   
Sbjct: 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKR--YEVYADR 245

Query: 646 GEIFKIK 652
            ++ + +
Sbjct: 246 TDVIEQR 252

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 43/341 (12%), Positives = 100/341 (29%), Gaps = 78/341 (22%)

Query: 351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGY--------HKCRGGSTR---EDGN 399
           L+DL +     + +    +    +  +SP    V +             G       DG+
Sbjct: 133 LYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGS 192

Query: 400 NQLLLENIKSPLPDI----SLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY 455
                  I + + +      + R  G +  ++P    IA+              +   V 
Sbjct: 193 -----TTIGNGIAEFVADEEMDRHTGYW--WAPDDSAIAYARI-----------DESPV- 233

Query: 456 FKNAFSTVWDPVREAVVYTSGGPE-------FASESSEVDIISINVDDVDGVSAVRRLTT 508
                     PV++     +   +        A +++    + + V      +  + +  
Sbjct: 234 ----------PVQKRYEVYADRTDVIEQRYPAAGDANV--QVKLGVISPAEQAQTQWIDL 281

Query: 509 NGKNNA-FPSVS-PDGKWIVFRSTRTGYK--NLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
             + +     V+  D + + F+      K  +L  +     +   L   T   W     +
Sbjct: 282 GKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS 341

Query: 565 --WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622
             +  DG  + ++S+R          +L   +  G    +  G+                
Sbjct: 342 LRFLDDGSIL-WSSERTG------FQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLA 394

Query: 623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ 663
            F +       E   +  + Q    I+ + L G   +RL++
Sbjct: 395 YFRA-----GIE---SARESQ----IYAVPLQGGQPQRLSK 423

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 29/226 (12%), Positives = 66/226 (29%), Gaps = 34/226 (15%)

Query: 451 RRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG 510
           +++V  ++ FS  +        + S   EF     +  +   NV+       +       
Sbjct: 2   KKKVTVEDLFSEDFKIHDPEAKWISDT-EFIYREQKGTVRLWNVETNTSTVLIEGKKIES 60

Query: 511 KNNAFPSVSPDGKWIVFRS------TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
                  +SPD ++ +F          +      +     G+   L              
Sbjct: 61  LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAG 120

Query: 565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS-----AGRANHPY----- 614
           W P G+ + F  + +        +Y     G    +++ +G       G ++  Y     
Sbjct: 121 WGPKGQQLIFIFENN--------IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEIL 172

Query: 615 -------FSPDGKSIVFTS-DYGGISAEPISTPHQYQPYGEIFKIK 652
                  +SPDG  + + + +   +    + T      Y  +    
Sbjct: 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG-SIYPTVKPYH 217

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 48/419 (11%), Positives = 112/419 (26%), Gaps = 82/419 (19%)

Query: 274 WVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNK 333
           W+ ++   +    E+   + ++ V   +T    T +V I+      L A     SP + +
Sbjct: 24  WISDTEFIY---REQKGTVRLWNV---ETN---TSTVLIEGKKIESLRAIRYEISP-DRE 73

Query: 334 FIAVATRRPTSSYRH-----IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGY-- 386
           +   +       Y+H       L  +       L                P   ++ +  
Sbjct: 74  YALFSYNV-EPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF 132

Query: 387 ------HKCRGGSTR---EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE 437
                     G         G   ++   +   L +  + +   +   +SP G R+A+  
Sbjct: 133 ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH-WWSPDGTRLAYAA 191

Query: 438 F----------------------------PG-------VYVVNSDGSNRRQVYFKNAFST 462
                                         G       ++V+  +G              
Sbjct: 192 INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR 251

Query: 463 VWDPVREAVVYTSGGPEFASESS----EVDIISINVDDVDGVSAVRRLTTNG---KNNAF 515
           + +     V + +      +  +       +   +       +      +     + N  
Sbjct: 252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV-CTKKHEDESEAWLHRQNEE 310

Query: 516 PSVSPDGK-----WIVFRSTRTGYKNLYIMDAE-GGEGYGLHRLTEGPWS-DTMCNWSPD 568
           P  S DG+       + +  R  + ++ +  ++       +  +T G W    +  +   
Sbjct: 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEK 370

Query: 569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS--GSAGRANHPYFSPDGKSIVFT 625
           G  I F S  D P     ++Y  +  G   R+ +              FS      +  
Sbjct: 371 GNKIYFLSTEDLP--RRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 47/351 (13%), Positives = 100/351 (28%), Gaps = 49/351 (13%)

Query: 343 TSSYRHIELFDLVKNK---FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN 399
                 + L+++  N     IE  +  S +       ISPD     +        +    
Sbjct: 33  REQKGTVRLWNVETNTSTVLIEGKKIESLRAI--RYEISPDREYALFSYNVEPIYQHSYT 90

Query: 400 NQLLLENIKS----PLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY 455
              +L  I       L    +      +  + PKG ++ F+    +Y     G    +V 
Sbjct: 91  GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVV 150

Query: 456 FKNAFSTVWDPV-----REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG 510
                  +++ +      E ++ T     ++ + +   +    ++D    S V  +    
Sbjct: 151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR--LAYAAIND----SRVPIMEL-- 202

Query: 511 KNNAFPSVSPDGKWIVFRSTRTGYKN----LYIMDAEGGEGYGLHRLTEGPWSD----TM 562
                 + S       +   + G +N    L+++   G          + P       TM
Sbjct: 203 ---PTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM 259

Query: 563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG----RANHPYFSPD 618
             W+   +      +R         + L         K  +  S      +   P FS D
Sbjct: 260 VKWATSTKVAVTWLNRA---QNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKD 316

Query: 619 GKSIVF--TSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFE 667
           G+   F      GG           Y       +      +++ +T   ++
Sbjct: 317 GRKFFFIRAIPQGG-------RGKFYHITVSSSQPNSSNDNIQSITSGDWD 360

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 38/200 (19%), Positives = 68/200 (34%), Gaps = 36/200 (18%)

Query: 477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS------T 530
           G E+  +S++ +I+  N++     + +   T    N +   +SPD +++   S       
Sbjct: 26  GQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWR 85

Query: 531 RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590
            +     YI D   GE     R  E P       WSP G  +A+    +        +YL
Sbjct: 86  YSYTATYYIYDLSNGE---FVRGNELPRPIQYLCWSPVGSKLAYVYQNN--------IYL 134

Query: 591 IHPNGTGLRKLIQSGS-----AGRANHPY------------FSPDGKSIVFTS-DYGGIS 632
               G    ++  +G       G  +  Y            +SP+GK + +   +   I 
Sbjct: 135 KQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIP 194

Query: 633 AEPISTPHQYQPYGEIFKIK 652
               S     + Y     I 
Sbjct: 195 VIAYSYYGD-EQYPRTINIP 213

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 32/230 (13%), Positives = 68/230 (29%), Gaps = 39/230 (16%)

Query: 444 VNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAV 503
           +   G      Y +      W  + +  V+  G     ++++     +      D  + +
Sbjct: 13  LMPGGKEFYNFYPEYVVGLQW--MGDNYVFIEGDDLVFNKANGKSAQTTRFSAADLNALM 70

Query: 504 RRLTTNGKNNAFPSVS--PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
                    +AFPS      G+ +V   T+ G       D    +   +  L +      
Sbjct: 71  PEGCKFQTTDAFPSFRTLDAGRGLVVLFTQGGL---VGFDMLARK---VTYLFDTNEETA 124

Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG--TGLRKLIQSGSAGRANHPY----- 614
             ++SP G+ +A+  + +        +Y+        G+ + I     G     Y     
Sbjct: 125 SLDFSPVGDRVAYVRNHN--------LYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH 176

Query: 615 -----------FSPDGKSIVFT-SDYGGISAEPISTPHQYQPYGEIFKIK 652
                      +SP G  + F   D   +  +P      +    E   + 
Sbjct: 177 QREFGIEKGTFWSPKGSCLAFYRMDQSMV--KPTPIVDYHPLEAESKPLY 224

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706

 Score = 51.6 bits (124), Expect = 7e-07
 Identities = 53/338 (15%), Positives = 97/338 (28%), Gaps = 87/338 (25%)

Query: 351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLL---ENI 407
            FD++  K   L           +   SP   RV Y +          N+ L +     +
Sbjct: 105 GFDMLARKVTYLFDTNEETA---SLDFSPVGDRVAYVR----------NHNLYIARGGKL 151

Query: 408 KSPLPDISLFRFDGS-------------FPS-----FSPKGDRIAFVEF-----PGVYVV 444
              +        DG+             F       +SPKG  +AF            +V
Sbjct: 152 GEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIV 211

Query: 445 NSDGSNRRQVYFK-------NAFSTVW--DPVREAVVYTSGGPE---------FASESSE 486
           +                   +   TV          VY   G           ++ + + 
Sbjct: 212 DYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENI 271

Query: 487 V------------DIISINVDDVDGVSAVRRLTTNG---KNNAFPSVSPDGKWIVFRSTR 531
           +             + + + +    V  +   T        +    +       +++S R
Sbjct: 272 LYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR 331

Query: 532 TGYKNLYIMDAEGGEGYGLHRLTEGPWS-DTMCNWSPDGEWIAFASDRDNPGSGSFEMYL 590
            G+ +LY+ D  G     + ++T+G W       + P G  + F S   +P     E + 
Sbjct: 332 DGWNHLYLYDTTGRL---IRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPL----ERHF 384

Query: 591 --IHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFT 625
             I   G   + L    +     H    SPDG +I+  
Sbjct: 385 YCIDIKGGKTKDL----TPESGMHRTQLSPDGSAIIDI 418

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 44/326 (13%), Positives = 90/326 (27%), Gaps = 90/326 (27%)

Query: 402 LLLENIKSPLPDISLFRFDGSFPSF---SPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKN 458
               ++ + +P+   F+   +FPSF         +      G+   +        ++  N
Sbjct: 61  FSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYLFDTN 120

Query: 459 AFST--VWDPVREAVVYTSGGPEFASESSEVDI-ISINVDDVDGVSAVRRLTTNGKNNAF 515
             +    + PV + V Y              ++ I+      +G+S    +T +G     
Sbjct: 121 EETASLDFSPVGDRVAYVRNH----------NLYIARGGKLGEGMSRAIAVTIDGTETLV 170

Query: 516 --PSV-------------SPDGKWIVFRST--------------------------RTGY 534
              +V             SP G  + F                               G 
Sbjct: 171 YGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT 230

Query: 535 KN----LYIMDAEGGEGYGLHRLTEGPWSD---TMCNWSPDGEWIAFA-SDRDNPGSGSF 586
            +    + I     G+      L  G   +   T  +WSPD   +  A  +R        
Sbjct: 231 PSHHVTVGIYHLATGK---TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA---QNEC 284

Query: 587 EMYLIHP-NGTGLRKLIQSGSAG---RANHPYFSP-DGKSIVFTSDYGGISAEPISTPHQ 641
           ++       G  +R L            +   F P      ++ S   G           
Sbjct: 285 KVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG----------- 333

Query: 642 YQPYGEIFKIKLDGSDLKRLTQNSFE 667
              +  ++     G  ++++T+  +E
Sbjct: 334 ---WNHLYLYDTTGRLIRQVTKGEWE 356

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740

 Score = 44.8 bits (106), Expect = 9e-05
 Identities = 29/201 (14%), Positives = 66/201 (32%), Gaps = 38/201 (18%)

Query: 450 NRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN 509
           +R+     +     +     ++ + S   E+     E +I+  N +  +    +   T +
Sbjct: 1   SRKTYTLTDYLKNTYRLKLYSLRWISDH-EYLY-KQENNILVFNAEYGNSSVFLENSTFD 58

Query: 510 GKNNAFPS--VSPDGKWIVFRST------RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT 561
              ++     +SPDG++I+           +   +  I D    +   L      P +  
Sbjct: 59  EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ---LITEERIPNNTQ 115

Query: 562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS-----AGRANHPY-- 614
              WSP G  +A+  + D        +Y+         ++  +G       G  +  Y  
Sbjct: 116 WVTWSPVGHKLAYVWNND--------IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167

Query: 615 ----------FSPDGKSIVFT 625
                     +SP+G  + + 
Sbjct: 168 EVFSAYSALWWSPNGTFLAYA 188

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Length = 343

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 23/214 (10%), Positives = 60/214 (28%), Gaps = 42/214 (19%)

Query: 471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRST 530
            VY +       ES ++ + ++   + +G   + ++           VSPD +++     
Sbjct: 6   TVYIASP-----ESQQIHVWNL---NHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR 57

Query: 531 RTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN--WSPDGEWIAFASDRDNPGSGSFEM 588
                  Y +  + G    L    E     ++ +      G+++       +  +G+  +
Sbjct: 58  PEFRVLAYRIAPDDGA---LTFAAESALPGSLTHISTDHQGQFVFVG----SYNAGNVSV 110

Query: 589 YLIHPNGT-GLRKLIQSGSAGRANHP---YFSPDGKSIVFTSDYGGISAEPISTPHQYQP 644
             +      G+  +++               SPD +  ++                    
Sbjct: 111 TRLEDGLPVGVVDVVEGLD-----GCHSANISPDNR-TLWVPALKQ-------------- 150

Query: 645 YGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFI 678
              I    +           +        GPR +
Sbjct: 151 -DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM 183

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 30/171 (17%)

Query: 465  DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKW 524
              V   V+++  G  F + S +    +I V +   V     +    + +       +   
Sbjct: 883  SWVH-GVMFSPDGSSFLTASDDQ---TIRVWETKKVCKNSAIVLKQEIDV--VFQENETM 936

Query: 525  IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG 584
            ++        + L ++  + G+    +           C  SP  E++AF  + D     
Sbjct: 937  VLAVD---NIRGLQLIAGKTGQI--DYLPEAQVSC---CCLSPHLEYVAFGDE-DG---- 983

Query: 585  SFEMYLIH----PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGI 631
                  I     PN          G      H  F+ DGK+++ +S+   I
Sbjct: 984  -----AIKIIELPNNRVFSSG--VGHKKAVRHIQFTADGKTLISSSEDSVI 1027

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	721
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.98
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.95
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.95
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.93
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.92
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.92
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.91
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.9
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.89
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.89
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.87
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.87
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.87
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.87
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.87
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.87
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.86
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.86
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.86
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.85
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.85
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.85
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.85
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.85
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.84
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.84
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.84
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.83
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.83
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.83
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.83
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.83
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.83
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.82
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.82
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.82
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.82
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.82
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.82
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.82
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.82
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.82
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.82
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.82
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.82
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.81
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.81
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.81
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.81
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.81
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.81
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.81
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.81
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.8
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.8
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.8
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.8
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.79
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.79
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.79
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.79
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.79
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.79
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.79
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.79
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.79
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.79
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.78
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.78
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.78
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.78
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.78
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.78
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.77
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.77
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.77
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.76
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.76
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.76
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.76
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.76
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.75
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.75
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.75
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.75
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.75
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.75
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.74
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.74
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.74
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.74
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.74
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.73
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.73
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.73
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.73
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.73
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.72
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.72
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.72
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.72
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.72
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.71
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.71
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.71
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.71
2pm7_B	297	Protein transport protein SEC13, protein transport	99.71
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.71
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.71
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.7
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.69
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.69
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.68
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.68
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.68
2pm7_B	297	Protein transport protein SEC13, protein transport	99.68
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.68
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.68
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.68
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.67
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.67
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.66
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	99.66
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.65
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.65
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.65
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.64
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.64
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.63
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.62
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.62
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.62
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.62
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.61
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.61
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.61
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.6
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.6
3jro_A	753	Fusion protein of protein transport protein SEC13	99.59
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.59
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.58
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.57
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.56
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.55
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.55
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.55
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.54
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.54
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.53
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	99.52
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.5
3jro_A	753	Fusion protein of protein transport protein SEC13	99.49
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.49
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.49
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.48
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.48
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.47
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.43
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.42
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.42
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.41
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.41
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.41
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.39
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.39
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.38
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.37
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.36
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.33
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.33
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.3
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.3
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.27
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.27
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.23
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.22
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.18
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.16
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.16
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.14
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.14
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.13
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.13
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.11
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.04
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.03
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.02
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.99
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.97
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.97
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	98.96
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.95
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.95
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.93
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.88
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.87
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.86
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.84
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.83
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.83
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.82
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.81
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.81
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.81
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.77
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.75
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.72
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.71
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.7
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.7
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.65
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.64
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.63
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.58
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.55
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.52
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.46
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.46
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.45
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.44
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.43
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.42
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.41
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.4
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.39
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.3
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.28
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.25
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.25
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.18
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.17
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.13
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.09
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.07
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.07
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.06
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.04
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.0
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	98.0
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.91
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.9
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.9
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.89
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.89
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.88
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.87
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.86
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.79
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.78
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.72
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.71
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.69
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.67
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.66
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.66
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.64
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.59
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	97.58
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.54
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.51
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.45
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.43
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.43
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.39
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.37
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.21
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	97.15
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.13
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.08
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.07
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.05
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.03
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.03
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.99
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.97
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.93
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.89
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.86
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.76
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.76
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.73
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.69
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.64
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.64
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.31
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.29
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.29
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.16
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.13
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.92
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.89
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.83
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.75
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.65
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.63
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.55
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.22
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.79
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.56
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.45
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.97
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.91
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	93.85
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.09
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	92.52
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.45
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	92.35
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	91.78
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	91.66
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	90.96
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	90.92
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.1
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	88.82
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	87.82
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	87.59
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	85.74
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	85.57
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	80.59

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=1e-33  Score=340.46  Aligned_cols=524  Identities=13%  Similarity=0.101  Sum_probs=351.5

Q ss_pred             CceEEEEeecCCCcceeEEeccCCCCCCCCceeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCce
Q 004971           29 RSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQ  108 (721)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (721)
                      .+.++|+      ...+||..+..+    +..++|+.|...+..++|||||+                           +
T Consensus        24 ~~~iaf~------~~~~l~~~~~~g----g~~~~lt~~~~~v~~~~~SPDG~---------------------------~   66 (1045)
T 1k32_A           24 GDRIIFV------CCDDLWEHDLKS----GSTRKIVSNLGVINNARFFPDGR---------------------------K   66 (1045)
T ss_dssp             TTEEEEE------ETTEEEEEETTT----CCEEEEECSSSEEEEEEECTTSS---------------------------E
T ss_pred             CCEEEEE------ECCcEEEEECCC----CcEEEeeeCCCcccCeEECCCCC---------------------------E
Confidence            4688998      346899999877    89999999999999999999999                           9


Q ss_pred             EEEEeee---cCCceeEEeeeecCcccccccchhhh-cccccccc--ce-eeccccccccCCceeeeeecccccCCEEEE
Q 004971          109 LIYVTER---NGTSNIYYDAVYYDTRRNTRSRTALE-QHGAEVST--RV-QVPLLDLNEVNGGVISMKDKPILSGEYLIY  181 (721)
Q Consensus       109 ~~~~~~~---~g~~~v~~~~~~~g~~~~~~~~~~l~-~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~  181 (721)
                      |+|.+..   +|...||++++.+|+    .++  |+ +..   ..  ++ .+..+       .|     +|  ||+ ++|
T Consensus        67 la~~s~~~~~~~~~~i~~~d~~~g~----~~~--lt~~~~---~~~~~~~~~~~~-------~~-----Sp--Dg~-ll~  122 (1045)
T 1k32_A           67 IAIRVMRGSSLNTADLYFYNGENGE----IKR--ITYFSG---KSTGRRMFTDVA-------GF-----DP--DGN-LII  122 (1045)
T ss_dssp             EEEEEEESTTCCEEEEEEEETTTTE----EEE--CCCCCE---EEETTEECSEEE-------EE-----CT--TCC-EEE
T ss_pred             EEEEEeeccCCCCCeEEEEECCCCC----eEE--cccCCC---cccccccccccc-------cC-----CC--CCE-EEE
Confidence            9999877   677789999987776    666  77 432   11  00 00011       68     99  999 888


Q ss_pred             EecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEec--CCCCCCcccceeeeeEEEEEcCCC
Q 004971          182 VSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASY--GNKGWDGEVEMLSTDIYIFLTRDG  259 (721)
Q Consensus       182 ~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~--~~~~w~~~~~~~~~~i~~~d~~~g  259 (721)
                      ++.......   ....||.+++++++.++++....  ...+||| | ++++...  ....|+.|.+....+||+.+.. +
T Consensus       123 ~~~~~~~~~---~~~~l~~~~~~~g~~~~l~~~~~--~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~-~  194 (1045)
T 1k32_A          123 STDAMQPFS---SMTCLYRVENDGINFVPLNLGPA--THILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-G  194 (1045)
T ss_dssp             EECTTSSST---TCCEEEEEEGGGTEEEECCSCSC--SEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEET-T
T ss_pred             EECCcCCCc---ccceEEEEECCCCCeEEecCCCc--ceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCC-C
Confidence            776532111   02489999999999998876543  2346999 8 6666543  2236888888888899998765 7


Q ss_pred             ceeEEEeccCC--cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEE
Q 004971          260 TQRVKIVENGG--WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAV  337 (721)
Q Consensus       260 ~~~~l~~~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~  337 (721)
                      +.+++..+.+.  .+.|++| +++|.  ...++...||.+...+ .       ...+++.+. ....++||| ||++|++
T Consensus       195 ~~~~l~~~~~~v~~~~~s~d-~l~~~--~~~dg~~~l~~~~~~g-~-------~~~~l~~~~-~~~~~~~Sp-DG~~la~  261 (1045)
T 1k32_A          195 AFKKIVDMSTHVSSPVIVGH-RIYFI--TDIDGFGQIYSTDLDG-K-------DLRKHTSFT-DYYPRHLNT-DGRRILF  261 (1045)
T ss_dssp             EEEEEECCSSCCEEEEEETT-EEEEE--ECTTSSCEEEEEETTS-C-------SCEECCCCC-SSCEEEEEE-SSSCEEE
T ss_pred             CeEECcCCCCcccceEEeCC-EEEEE--EeccCceEEEEEeCCC-C-------cceEecCCC-CcceeeEcC-CCCEEEE
Confidence            77777543333  6799999 88774  3446788999665443 2       456666554 345679999 9999999


Q ss_pred             EEecCCCCeeeEEEEECCCCceEEeeccc--------CCCCcccCcEEc-CCCCEEEEEEeeCCCCCCCCcceeEEEecc
Q 004971          338 ATRRPTSSYRHIELFDLVKNKFIELTRFV--------SPKTHHLNPFIS-PDSSRVGYHKCRGGSTREDGNNQLLLENIK  408 (721)
Q Consensus       338 ~~~~~g~~~~~l~l~dl~tg~~~~l~~~~--------~~~~~~~~~~~S-pdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  408 (721)
                      ..      +..|++||+.+.+...+....        .+...+..++|| |||++|++..   .       ..++++++.
T Consensus       262 ~~------~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~---~-------~~i~~~~~~  325 (1045)
T 1k32_A          262 SK------GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS---R-------GQAFIQDVS  325 (1045)
T ss_dssp             EE------TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE---T-------TEEEEECTT
T ss_pred             Ee------CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE---c-------CEEEEEcCC
Confidence            63      235999999655443322100        012246789999 9999999976   2       346777665


Q ss_pred             CCCC-cceeccc-CCCCceeCcCCCEEEEEe-CCcEE-EEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCC
Q 004971          409 SPLP-DISLFRF-DGSFPSFSPKGDRIAFVE-FPGVY-VVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFAS  482 (721)
Q Consensus       409 ~~~~-~~~~~~~-~~~~~~~SpDG~~la~~~-~~~l~-v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~  482 (721)
                      ++.. .+..... ....++|+ ||+.|++.+ ...|+ ++++.+++.+.+.  ...+..++|||||++|++.+.      
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~------  398 (1045)
T 1k32_A          326 GTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND------  398 (1045)
T ss_dssp             SSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEET------
T ss_pred             CCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECC------
Confidence            4421 1111111 23457899 999999985 55788 9999998877776  345678999999999999873      


Q ss_pred             CCCcEEEEEEEccCCCCccceEEcc-cCCCCCcceEEccCCCEEEEEEeeC-------CceeEEEEECCCCcccceEECc
Q 004971          483 ESSEVDIISINVDDVDGVSAVRRLT-TNGKNNAFPSVSPDGKWIVFRSTRT-------GYKNLYIMDAEGGEGYGLHRLT  554 (721)
Q Consensus       483 ~~~~~~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~SpDg~~l~~~s~~~-------g~~~l~~~d~~~g~~~~~~~l~  554 (721)
                       ++.+.+|  +..++    ....+. .+...+..++|||||++|++.+...       ....|++||+.+++   +..++
T Consensus       399 -~~~v~~~--d~~tg----~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---~~~l~  468 (1045)
T 1k32_A          399 -RFEIMTV--DLETG----KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAAT  468 (1045)
T ss_dssp             -TSEEEEE--ETTTC----CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECS
T ss_pred             -CCeEEEE--ECCCC----ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc---EEEee
Confidence             3455555  44443    445554 4555678899999999999987642       34689999999887   67787


Q ss_pred             CCCcCceeeEEccCCCEEEEEEccCCC-----------CCCceeEEEEec------------------------CCC--c
Q 004971          555 EGPWSDTMCNWSPDGEWIAFASDRDNP-----------GSGSFEMYLIHP------------------------NGT--G  597 (721)
Q Consensus       555 ~~~~~~~~~~~SpDG~~l~~~~~~~~~-----------~~~~~~i~~~d~------------------------~~~--~  597 (721)
                      .+......++|||||++|++.+.+...           ......+|.+-+                        ++.  .
T Consensus       469 ~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~  548 (1045)
T 1k32_A          469 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKR  548 (1045)
T ss_dssp             CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGG
T ss_pred             CCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHc
Confidence            776666789999999999998875310           001112333322                        211  1


Q ss_pred             eEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971          598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       598 ~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~  676 (721)
                      ...+.  .+.+.+..++++|||+.++.....+... .   ....+.....||.||+.+++.+.+..   .+...+|||+
T Consensus       549 ~~~l~--~~~~~~~~~~~s~dg~~~~~~~~~g~~~-~---~~~~~~~~~~l~~~d~~~~~~~~l~~---~v~~~~~S~D  618 (1045)
T 1k32_A          549 SSPIN--VDPGDYRMIIPLESSILIYSVPVHGEFA-A---YYQGAPEKGVLLKYDVKTRKVTEVKN---NLTDLRLSAD  618 (1045)
T ss_dssp             CEECS--CCCBCEEEEEECSSEEEEEECCCCCSHH-H---HHHCCCCCEEEEEEETTTCCEEEEEE---EEEEEEECTT
T ss_pred             eEEcC--CCCCChhheEEcCCCeEEEEecccCccc-c---cccccCCCceEEEEECCCCcEEEeec---CcceEEECCC
Confidence            11221  1335567789999998766522100000 0   00000112369999999998887772   2456789997

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2e-31  Score=300.13  Aligned_cols=482  Identities=18%  Similarity=0.185  Sum_probs=330.4

Q ss_pred             ceeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeecCCceeEEeeeecCcccccccch
Q 004971           59 NEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRT  138 (721)
Q Consensus        59 ~~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~  138 (721)
                      +..||.+|...+...+|||||+                           +||. +..+|.+.||..   .++.   .+. 
T Consensus         8 e~~~L~GH~~~V~~~a~spdg~---------------------------~las-~~~d~~v~iWd~---~~~~---~~~-   52 (577)
T 2ymu_A            8 ERNRLEAHSSSVRGVAFSPDGQ---------------------------TIAS-ASDDKTVKLWNR---NGQL---LQT-   52 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSS---------------------------CEEE-EETTSEEEEECT---TSCE---EEE-
T ss_pred             EeeEECCCCCcEEEEEECCCCC---------------------------EEEE-EeCCCEEEEEEC---CCCE---EEE-
Confidence            3467999999999999999998                           7664 457888888863   3431   222 


Q ss_pred             hhh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCC
Q 004971          139 ALE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVA  217 (721)
Q Consensus       139 ~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~  217 (721)
                       |. |..     .|.  .+       .|     +|  ||++|+..+.++.        ..||  +..+.....+..+...
T Consensus        53 -l~gh~~-----~V~--~l-------~f-----sp--dg~~las~~~d~~--------i~vW--d~~~~~~~~~~~~~~~  100 (577)
T 2ymu_A           53 -LTGHSS-----SVW--GV-------AF-----SP--DGQTIASASDDKT--------VKLW--NRNGQLLQTLTGHSSS  100 (577)
T ss_dssp             -EECCSS-----CEE--EE-------EE-----CT--TSSEEEEEETTSC--------EEEE--ETTSCEEEEECCCSSC
T ss_pred             -EeCCCC-----CEE--EE-------EE-----CC--CCCEEEEEeCCCE--------EEEE--ECCCCEEEEEECCCCC
Confidence             44 322     111  11       46     99  9999988765531        3555  5666667777777776


Q ss_pred             ccccccCCCCCEEEEEecCCCC--CCcc----------------------------------------------------
Q 004971          218 DFSPAVSPSGKYTAVASYGNKG--WDGE----------------------------------------------------  243 (721)
Q Consensus       218 ~~~p~~SPDG~~la~~~~~~~~--w~~~----------------------------------------------------  243 (721)
                      ....+|||||++|+.+..++..  |...                                                    
T Consensus       101 v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (577)
T 2ymu_A          101 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS  180 (577)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCS
T ss_pred             EEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCC
Confidence            6777899999999987643220  0000                                                    


Q ss_pred             ----------------cceeeeeEEEEEcCCCceeEEEeccCC--cceeccCCeEEEEeccCCCCcEEEEEEecCCCcce
Q 004971          244 ----------------VEMLSTDIYIFLTRDGTQRVKIVENGG--WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLV  305 (721)
Q Consensus       244 ----------------~~~~~~~i~~~d~~~g~~~~l~~~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~  305 (721)
                                      .+.....|.+|+..+.....+..+...  ..+|+|||+.+++  ...++.+.+|.   ..+.  
T Consensus       181 ~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~~d~~i~~w~---~~~~--  253 (577)
T 2ymu_A          181 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIAS--ASDDKTVKLWN---RNGQ--  253 (577)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEE--EETTSCEEEEC---TTSC--
T ss_pred             cceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEE--EeCCCEEEEEe---CCCC--
Confidence                            011123345555422222222222222  3478888775553  22367788883   2222  


Q ss_pred             eccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEE
Q 004971          306 STESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVG  385 (721)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~  385 (721)
                           ....+..+...+..++|+| ||+.|+....     +..|++||.......   ....+...+..++|+||++.|+
T Consensus       254 -----~~~~~~~~~~~v~~v~~~~-d~~~l~~~~~-----d~~i~~w~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~  319 (577)
T 2ymu_A          254 -----LLQTLTGHSSSVNGVAFRP-DGQTIASASD-----DKTVKLWNRNGQLLQ---TLTGHSSSVWGVAFSPDGQTIA  319 (577)
T ss_dssp             -----EEEEECCCSSCEEEEEECT-TSSEEEEEET-----TSCEEEEETTSCEEE---EECCCSSCEEEEEECTTSSEEE
T ss_pred             -----EEEEEecCCCCEEEEEEcC-CCCEEEEEeC-----CCEEEEEeCCCcEEE---EEecCCCCeEEEEECCCCCEEE
Confidence                 3445566666778899999 9999887543     345999997543322   2345567788899999999998


Q ss_pred             EEEeeCCCCCCCCcceeEEEeccCCC-CcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCcee
Q 004971          386 YHKCRGGSTREDGNNQLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFS  461 (721)
Q Consensus       386 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~  461 (721)
                      ....++.         +.++++.+.. ..+.........++|+|||+.|+... ++.+.+|+..+.....+.  ...+..
T Consensus       320 t~~~d~~---------i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~  390 (577)
T 2ymu_A          320 SASDDKT---------VKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG  390 (577)
T ss_dssp             EEETTSC---------EEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEE
T ss_pred             EEeCCCe---------EEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEE
Confidence            8765554         4444543321 11111122234578999999999885 678999998765555555  456789


Q ss_pred             eEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEE
Q 004971          462 TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD  541 (721)
Q Consensus       462 ~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d  541 (721)
                      ++|+|||++|+..+       .++.+.||+.  .+.    ....+..+...+..++|+||+++|+..+.   +..|++||
T Consensus       391 ~~~s~dg~~l~~~~-------~d~~v~~~~~--~~~----~~~~~~~~~~~v~~~~~s~d~~~l~~~~~---d~~v~~w~  454 (577)
T 2ymu_A          391 VAFSPDGQTIASAS-------DDKTVKLWNR--NGQ----LLQTLTGHSSSVWGVAFSPDDQTIASASD---DKTVKLWN  454 (577)
T ss_dssp             EEECTTSSCEEEEE-------TTSEEEEECT--TCC----EEEEEECCSSCEEEEEECTTSSEEEEEET---TSEEEEEE
T ss_pred             EEECCCCCEEEEEe-------CCCEEEEEeC--CCC----EEEEecCCCCCeEEEEECCCCCEEEEEcC---CCEEEEEE
Confidence            99999999999886       4678888863  332    56667777777888999999999998886   77899999


Q ss_pred             CCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCE
Q 004971          542 AEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS  621 (721)
Q Consensus       542 ~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~  621 (721)
                      ..+..   +..+..+...+..++|+|||++|+.+..+.       .|++||..+...+.+.  ++...+..++|||||++
T Consensus       455 ~~~~~---~~~~~~~~~~v~~~~~spd~~~las~~~d~-------~i~iw~~~~~~~~~~~--~h~~~v~~l~~s~dg~~  522 (577)
T 2ymu_A          455 RNGQL---LQTLTGHSSSVRGVAFSPDGQTIASASDDK-------TVKLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQT  522 (577)
T ss_dssp             TTSCE---EEEEECCSSCEEEEEECTTSCEEEEEETTS-------EEEEEETTSCEEEEEE--CCSSCEEEEEECTTSSC
T ss_pred             CCCCE---EEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-------EEEEEcCCCCEEEEEe--CCCCCEEEEEEcCCCCE
Confidence            86543   666777777788999999999999988875       8999997654444443  37778899999999999


Q ss_pred             EEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC--cCCccc
Q 004971          622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR--FIRPVD  682 (721)
Q Consensus       622 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~--~l~~~~  682 (721)
                      |+..+.+.                 .|++||.++.....+..|...+...+|+|+  +|+.+.
T Consensus       523 l~s~~~dg-----------------~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~  568 (577)
T 2ymu_A          523 IASASDDK-----------------TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS  568 (577)
T ss_dssp             EEEEETTS-----------------EEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred             EEEEECcC-----------------EEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            98877654                 499999887777888888888899999997  454444

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=6.7e-31  Score=315.86  Aligned_cols=424  Identities=14%  Similarity=0.162  Sum_probs=307.5

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecC---CCCCCccccee
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYG---NKGWDGEVEML  247 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~---~~~w~~~~~~~  247 (721)
                      +|+++|++|+|++..           .||.+++++++.++|+.+......|+|||||++|||++.+   ..         
T Consensus        19 ~~~~S~~~iaf~~~~-----------~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~---------   78 (1045)
T 1k32_A           19 NPDIHGDRIIFVCCD-----------DLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLN---------   78 (1045)
T ss_dssp             EEEEETTEEEEEETT-----------EEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCC---------
T ss_pred             CcEEeCCEEEEEECC-----------cEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCC---------
Confidence            455567899998863           8999999999999999988888899999999999998754   22         


Q ss_pred             eeeEEEEEcCCCceeEEEeccC---------CcceeccCCeEEEEeccC--CCCcEEEEEEecCCCcceeccccceEEeC
Q 004971          248 STDIYIFLTRDGTQRVKIVENG---------GWPCWVDESTLFFHRKSE--EDDWISVYKVILPQTGLVSTESVSIQRVT  316 (721)
Q Consensus       248 ~~~i~~~d~~~g~~~~l~~~~~---------~~~~ws~dg~l~~~~~~~--~~g~~~l~~~~~~~~~~~~~~~~~~~~~~  316 (721)
                      ...||+|++++|+.++++.+..         ..++|+|||+++|....+  ..+...||.+...++        ...+++
T Consensus        79 ~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g--------~~~~l~  150 (1045)
T 1k32_A           79 TADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI--------NFVPLN  150 (1045)
T ss_dssp             EEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT--------EEEECC
T ss_pred             CCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCC--------CeEEec
Confidence            4789999999999888765433         246999999977754321  124567885555442        455555


Q ss_pred             CCCCcccCceeecCCCCEEEEEEec---------CCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEE
Q 004971          317 PPGLHAFTPATSPGNNKFIAVATRR---------PTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYH  387 (721)
Q Consensus       317 ~~~~~~~~~~~sp~dG~~la~~~~~---------~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~  387 (721)
                      ...  ...+.|||  | .++.....         .+.....||+.+.. ++...+   ..+...+..+.|++|  .+++.
T Consensus       151 ~~~--~~~~~~sp--G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~-~~~~~l---~~~~~~v~~~~~s~d--~l~~~  219 (1045)
T 1k32_A          151 LGP--ATHILFAD--G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKI---VDMSTHVSSPVIVGH--RIYFI  219 (1045)
T ss_dssp             SCS--CSEEEEET--T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEE---ECCSSCCEEEEEETT--EEEEE
T ss_pred             CCC--cceeeeCC--C-EEEEeccCCCccccccccCCCcCCEEEECCC-CCeEEC---cCCCCcccceEEeCC--EEEEE
Confidence            543  23566888  4 55554311         12334567776654 555555   445777888999987  77776


Q ss_pred             EeeCCCCCCCCcceeEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEee----------
Q 004971          388 KCRGGSTREDGNNQLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF----------  456 (721)
Q Consensus       388 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~~----------  456 (721)
                      ....+      ...+|..+..+... .++.. .....++|||||++|++.....|++|++.++....+..          
T Consensus       220 ~~~dg------~~~l~~~~~~g~~~~~l~~~-~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~  292 (1045)
T 1k32_A          220 TDIDG------FGQIYSTDLDGKDLRKHTSF-TDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRI  292 (1045)
T ss_dssp             ECTTS------SCEEEEEETTSCSCEECCCC-CSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEE
T ss_pred             EeccC------ceEEEEEeCCCCcceEecCC-CCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCccccccccc
Confidence            54432      15688877655422 22221 12334699999999999999999999996665554432          


Q ss_pred             ---cCceeeEEc-CCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCC-CCcceEEccCCCEEEEEEee
Q 004971          457 ---KNAFSTVWD-PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK-NNAFPSVSPDGKWIVFRSTR  531 (721)
Q Consensus       457 ---~~~~~~~~s-pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~SpDg~~l~~~s~~  531 (721)
                         ..+..+.|| |||++|++.+.        +  .|+.++..+.    ....+..+.. ....++|+ ||++|++.+. 
T Consensus       293 ~~~~~v~~~~~S~pdG~~la~~~~--------~--~i~~~~~~~~----~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-  356 (1045)
T 1k32_A          293 ISIPSKFAEDFSPLDGDLIAFVSR--------G--QAFIQDVSGT----YVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-  356 (1045)
T ss_dssp             EECGGGGEEEEEECGGGCEEEEET--------T--EEEEECTTSS----BEEECSCCSCEEEEEECSS-SEEEEEEEET-
T ss_pred             ccccccceeeecCCCCCEEEEEEc--------C--EEEEEcCCCC----ceEEccCCCcceEEeeeEc-CCCeEEEEEC-
Confidence               147889999 99999999862        3  3555555543    5566666655 67789999 9999999987 


Q ss_pred             CCceeEE-EEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCc
Q 004971          532 TGYKNLY-IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA  610 (721)
Q Consensus       532 ~g~~~l~-~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~  610 (721)
                        ...|+ +|++.+++   ...+..+...+..++|||||++|++...+.       .|++||+.+++.+.+... +.+.+
T Consensus       357 --~~~l~~~~d~~~~~---~~~l~~~~~~~~~~~~SpDG~~la~~~~~~-------~v~~~d~~tg~~~~~~~~-~~~~v  423 (1045)
T 1k32_A          357 --EGDFLGIYDYRTGK---AEKFEENLGNVFAMGVDRNGKFAVVANDRF-------EIMTVDLETGKPTVIERS-REAMI  423 (1045)
T ss_dssp             --TEEEEEEEETTTCC---EEECCCCCCSEEEEEECTTSSEEEEEETTS-------EEEEEETTTCCEEEEEEC-SSSCC
T ss_pred             --CCceEEEEECCCCC---ceEecCCccceeeeEECCCCCEEEEECCCC-------eEEEEECCCCceEEeccC-CCCCc
Confidence              67899 99999887   666775556678899999999999998774       899999999988887643 56677


Q ss_pred             CCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971          611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       611 ~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~  676 (721)
                      ..++|||||++|++.+.+...+.       .......|++||+++++.+.++.+......++|+|+
T Consensus       424 ~~~~~SpDG~~la~~~~~~~~~~-------~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spd  482 (1045)
T 1k32_A          424 TDFTISDNSRFIAYGFPLKHGET-------DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD  482 (1045)
T ss_dssp             CCEEECTTSCEEEEEEEECSSTT-------CSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTT
T ss_pred             cceEECCCCCeEEEEecCccccc-------cCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCC
Confidence            89999999999999877540000       000124699999999998899988777778999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.8e-29  Score=285.77  Aligned_cols=448  Identities=14%  Similarity=0.094  Sum_probs=287.2

Q ss_pred             CceeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeecCCceeEEeeeecCcccccccc
Q 004971           58 ANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSR  137 (721)
Q Consensus        58 ~~~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~  137 (721)
                      .....+..|...+...+|||||+                           +|+ ++..+|.+.||.+.  .++.   ..+
T Consensus        50 ~~~~~~~~h~~~v~~~~~spdg~---------------------------~la-sg~~d~~v~lWd~~--~~~~---~~~   96 (611)
T 1nr0_A           50 TDTEIYTEHSHQTTVAKTSPSGY---------------------------YCA-SGDVHGNVRIWDTT--QTTH---ILK   96 (611)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSS---------------------------EEE-EEETTSEEEEEESS--STTC---CEE
T ss_pred             ccCeEecCCCCceEEEEECCCCc---------------------------EEE-EEeCCCCEEEeECC--CCcc---eee
Confidence            34566789999999999999997                           655 55678999999864  2220   111


Q ss_pred             hhhh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCC
Q 004971          138 TALE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGV  216 (721)
Q Consensus       138 ~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~  216 (721)
                      ..+. +..     .|  ..+       .|     +|  ||++|+.++.....      ...++..+. +.....+..|..
T Consensus        97 ~~~~~~~~-----~v--~~v-------~f-----s~--dg~~l~~~~~~~~~------~~~v~~wd~-~~~~~~l~gh~~  148 (611)
T 1nr0_A           97 TTIPVFSG-----PV--KDI-------SW-----DS--ESKRIAAVGEGRER------FGHVFLFDT-GTSNGNLTGQAR  148 (611)
T ss_dssp             EEEECSSS-----CE--EEE-------EE-----CT--TSCEEEEEECCSSC------SEEEEETTT-CCBCBCCCCCSS
T ss_pred             EeecccCC-----ce--EEE-------EE-----CC--CCCEEEEEECCCCc------eeEEEEeeC-CCCcceecCCCC
Confidence            0122 211     11  111       57     99  99999887654321      136777763 333445656666


Q ss_pred             CccccccCCCCCE-EEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCC---cceeccCCeEEEEeccCCCCcE
Q 004971          217 ADFSPAVSPSGKY-TAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGG---WPCWVDESTLFFHRKSEEDDWI  292 (721)
Q Consensus       217 ~~~~p~~SPDG~~-la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~---~~~ws~dg~l~~~~~~~~~g~~  292 (721)
                      .....+|+|++++ |+.++.+            ..|.+|+..+++..........   ..+|+|||+++++  ...++.+
T Consensus       149 ~v~~v~f~p~~~~~l~s~s~D------------~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las--~s~D~~i  214 (611)
T 1nr0_A          149 AMNSVDFKPSRPFRIISGSDD------------NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS--TGGDGTI  214 (611)
T ss_dssp             CEEEEEECSSSSCEEEEEETT------------SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCE
T ss_pred             CceEEEECCCCCeEEEEEeCC------------CeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEE--EECCCcE
Confidence            6677799999974 7776644            3578888877665443332222   4589999997774  3347899


Q ss_pred             EEEEEecCCCcceeccccceEEeC-------CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEe---
Q 004971          293 SVYKVILPQTGLVSTESVSIQRVT-------PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIEL---  362 (721)
Q Consensus       293 ~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l---  362 (721)
                      .+|......         ....+.       .+...+..++|+| ||++|+...     .+..|++||+.+++....   
T Consensus       215 ~lwd~~~g~---------~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s-----~D~~v~lWd~~~~~~~~~~~~  279 (611)
T 1nr0_A          215 VLYNGVDGT---------KTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASAS-----ADKTIKIWNVATLKVEKTIPV  279 (611)
T ss_dssp             EEEETTTCC---------EEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEE-----TTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEECCCCc---------EeeeeccccccccccCCCEEEEEECC-CCCEEEEEe-----CCCeEEEEeCCCCceeeeecC
Confidence            999542221         222221       4555678899999 999998754     345699999988754221   


Q ss_pred             --------------------------------------ecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEE
Q 004971          363 --------------------------------------TRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLL  404 (721)
Q Consensus       363 --------------------------------------~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~  404 (721)
                                                            ....+|...+..++|+|||+.|+..+.++.         +.+
T Consensus       280 ~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~---------v~~  350 (611)
T 1nr0_A          280 GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGH---------INS  350 (611)
T ss_dssp             CSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC---------EEE
T ss_pred             CCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc---------EEE
Confidence                                                  111245566778899999999998776554         444


Q ss_pred             EeccCCCCccee---cccCCCCcee--------------------------------------------CcCCCEEEEEe
Q 004971          405 ENIKSPLPDISL---FRFDGSFPSF--------------------------------------------SPKGDRIAFVE  437 (721)
Q Consensus       405 ~~~~~~~~~~~~---~~~~~~~~~~--------------------------------------------SpDG~~la~~~  437 (721)
                      +++..+......   .......++|                                            +|||+.++...
T Consensus       351 Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~  430 (611)
T 1nr0_A          351 WDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC  430 (611)
T ss_dssp             EETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE
T ss_pred             EECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEe
Confidence            454433110000   0011112344                                            44444444333


Q ss_pred             CCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcce
Q 004971          438 FPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFP  516 (721)
Q Consensus       438 ~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~  516 (721)
                      ...+.+|+  .++...+. ...+..++|||||+.|+..+       .++.++||++.....   ..... ..+...+..+
T Consensus       431 ~~~v~~~~--~~~~~~~~~~~~v~~va~spdg~~lasgs-------~D~~v~lwd~~~~~~---~~~~~-~~h~~~v~~v  497 (611)
T 1nr0_A          431 YKHIAIYS--HGKLTEVPISYNSSCVALSNDKQFVAVGG-------QDSKVHVYKLSGASV---SEVKT-IVHPAEITSV  497 (611)
T ss_dssp             SSEEEEEE--TTEEEEEECSSCEEEEEECTTSCEEEEEE-------TTSEEEEEEEETTEE---EEEEE-EECSSCEEEE
T ss_pred             CceEEEEe--CCceeeeecCCCceEEEEeCCCCEEEEeC-------CCCeEEEEEccCCce---eeeec-cCCCCceEEE
Confidence            44444444  12222222 23456899999999999987       578999999875321   01122 4455678889


Q ss_pred             EEccCCCEEEEEEeeCCceeEEEEECCC-CcccceEE--CcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971          517 SVSPDGKWIVFRSTRTGYKNLYIMDAEG-GEGYGLHR--LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~-g~~~~~~~--l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                      +|||||++|+..+.   +..|++|++.+ ++.  ...  ...+...+..++|||||++|+.++.+.       .|++|++
T Consensus       498 ~fspdg~~las~s~---d~~v~~w~~~~~~~~--~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~-------~v~lW~~  565 (611)
T 1nr0_A          498 AFSNNGAFLVATDQ---SRKVIPYSVANNFEL--AHTNSWTFHTAKVACVSWSPDNVRLATGSLDN-------SVIVWNM  565 (611)
T ss_dssp             EECTTSSEEEEEET---TSCEEEEEGGGTTEE--SCCCCCCCCSSCEEEEEECTTSSEEEEEETTS-------CEEEEET
T ss_pred             EECCCCCEEEEEcC---CCCEEEEEcCCCCce--eeeeeeeecccceeEEEECCCCCEEEEEECCC-------cEEEEEC
Confidence            99999999998887   78899999987 442  111  222566788999999999999999885       8999999


Q ss_pred             CCCceEE-eeecCC-CCCcCCeEECCCCCEEEEEEecCC
Q 004971          594 NGTGLRK-LIQSGS-AGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       594 ~~~~~~~-l~~~~~-~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      ++++... ....+| ...+..++|+|||+ |+..+.+..
T Consensus       566 ~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~  603 (611)
T 1nr0_A          566 NKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSN  603 (611)
T ss_dssp             TCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSC
T ss_pred             CCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCC
Confidence            8765221 222235 57788999999998 777666553

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.98  E-value=1.3e-29  Score=286.99  Aligned_cols=424  Identities=11%  Similarity=0.076  Sum_probs=275.3

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcc-eEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeee
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGL-TRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLST  249 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~-~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~  249 (721)
                      +|  ||++|+..+.++.        ..||.+...... ...+..+.......+|||||++|+.+..+..        ...
T Consensus        68 sp--dg~~lasg~~d~~--------v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~--------~~~  129 (611)
T 1nr0_A           68 SP--SGYYCASGDVHGN--------VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE--------RFG  129 (611)
T ss_dssp             CT--TSSEEEEEETTSE--------EEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS--------CSE
T ss_pred             CC--CCcEEEEEeCCCC--------EEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC--------cee
Confidence            99  9999998776531        356654322222 2345556666667799999999998764332        125


Q ss_pred             eEEEEEcCCCcee-EEEeccCC--cceeccCCe-EEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCc
Q 004971          250 DIYIFLTRDGTQR-VKIVENGG--WPCWVDEST-LFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTP  325 (721)
Q Consensus       250 ~i~~~d~~~g~~~-~l~~~~~~--~~~ws~dg~-l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (721)
                      .|++|+.  ++.. .+..+...  ..+|+|++. .+++  ...++.+.+|...  ...       ....+..+...+..+
T Consensus       130 ~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s--~s~D~~v~lwd~~--~~~-------~~~~l~~H~~~V~~v  196 (611)
T 1nr0_A          130 HVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIIS--GSDDNTVAIFEGP--PFK-------FKSTFGEHTKFVHSV  196 (611)
T ss_dssp             EEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEE--EETTSCEEEEETT--TBE-------EEEEECCCSSCEEEE
T ss_pred             EEEEeeC--CCCcceecCCCCCceEEEECCCCCeEEEE--EeCCCeEEEEECC--CCe-------EeeeeccccCceEEE
Confidence            7888874  3322 22222222  458999986 3443  3337899999532  111       334556676678899


Q ss_pred             eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc-----cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF-----VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~-----~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      +|+| ||++|+...     .+..|++||+.+++.......     ..|...+..++|+|||+.|+..+.++.        
T Consensus       197 ~fsp-dg~~las~s-----~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~--------  262 (611)
T 1nr0_A          197 RYNP-DGSLFASTG-----GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT--------  262 (611)
T ss_dssp             EECT-TSSEEEEEE-----TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE--------
T ss_pred             EECC-CCCEEEEEE-----CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe--------
Confidence            9999 999988754     345699999998875432211     146677888999999999998776554        


Q ss_pred             eeEEEeccCCCC------------------------------------------cce---ecccCCCCceeCcCCCEEEE
Q 004971          401 QLLLENIKSPLP------------------------------------------DIS---LFRFDGSFPSFSPKGDRIAF  435 (721)
Q Consensus       401 ~l~~~~~~~~~~------------------------------------------~~~---~~~~~~~~~~~SpDG~~la~  435 (721)
                       +.++++..+..                                          ...   ........++|||||++|+.
T Consensus       263 -v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s  341 (611)
T 1nr0_A          263 -IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFS  341 (611)
T ss_dssp             -EEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             -EEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEE
Confidence             23333322100                                          000   01112234689999999988


Q ss_pred             Ee-CCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC-----------
Q 004971          436 VE-FPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG-----------  499 (721)
Q Consensus       436 ~~-~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------  499 (721)
                      .+ ++.|.+||+.+++...+.    ...+..+.|++++. ++..+       .++.+++|.+.......           
T Consensus       342 ~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~-l~s~s-------~d~~v~~w~~~~~~~~~~~~~~~~~~~~  413 (611)
T 1nr0_A          342 ADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVS-------WDDHLKVVPAGGSGVDSSKAVANKLSSQ  413 (611)
T ss_dssp             EETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEE-------TTTEEEEECSSSSSSCTTSCCEEECSSC
T ss_pred             EeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCc-EEEEE-------cCCceEEeecCCccccccceeeeecCCC
Confidence            85 789999999988765543    34566788887764 44443       23455555432110000           


Q ss_pred             -------------------------ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc
Q 004971          500 -------------------------VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT  554 (721)
Q Consensus       500 -------------------------~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~  554 (721)
                                               .+....+. +...+..++|||||++|+..+.   +..|++||+.++....... .
T Consensus       414 ~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~-~~~~v~~va~spdg~~lasgs~---D~~v~lwd~~~~~~~~~~~-~  488 (611)
T 1nr0_A          414 PLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP-ISYNSSCVALSNDKQFVAVGGQ---DSKVHVYKLSGASVSEVKT-I  488 (611)
T ss_dssp             EEEEEECTTSSCEEEEESSEEEEEETTEEEEEE-CSSCEEEEEECTTSCEEEEEET---TSEEEEEEEETTEEEEEEE-E
T ss_pred             CcEEEEeCCCcEEEEEeCceEEEEeCCceeeee-cCCCceEEEEeCCCCEEEEeCC---CCeEEEEEccCCceeeeec-c
Confidence                                     00111111 2234567899999999999987   7899999998765322233 4


Q ss_pred             CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC-CceEEe-eecCCCCCcCCeEECCCCCEEEEEEecCCCc
Q 004971          555 EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG-TGLRKL-IQSGSAGRANHPYFSPDGKSIVFTSDYGGIS  632 (721)
Q Consensus       555 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~-~~~~~l-~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~  632 (721)
                      .+...+..++|||||++|+.++.+.       .|++|++.+ ++.... ....|...+..++|||||++|+..+.+..  
T Consensus       489 ~h~~~v~~v~fspdg~~las~s~d~-------~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~--  559 (611)
T 1nr0_A          489 VHPAEITSVAFSNNGAFLVATDQSR-------KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS--  559 (611)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTS-------CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC--
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCC-------CEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCc--
Confidence            4566678999999999999988875       899999987 433221 11126677889999999999998887663  


Q ss_pred             CCCCCCCCCCCCCccEEEEEcCCCC--e-EEeccC-CCCCCCceecCCc
Q 004971          633 AEPISTPHQYQPYGEIFKIKLDGSD--L-KRLTQN-SFEDGTPAWGPRF  677 (721)
Q Consensus       633 ~~~~~~~~~~~~~~~l~~~d~~~~~--~-~~lt~~-~~~~~~~~~sp~~  677 (721)
                                     |.+||++++.  . ..+..| ...+...+|+|+.
T Consensus       560 ---------------v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~  593 (611)
T 1nr0_A          560 ---------------VIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET  593 (611)
T ss_dssp             ---------------EEEEETTCTTSCCEEETTSSTTSCEEEEEEEETT
T ss_pred             ---------------EEEEECCCcccccchhhccCcccCeeEEEEcCCC
Confidence                           9999998764  2 345556 5677889999964

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=9.3e-28  Score=270.20  Aligned_cols=377  Identities=21%  Similarity=0.223  Sum_probs=269.5

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeee
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTD  250 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~  250 (721)
                      +|  ||++|+..+..+          .+...+..+.....+..+.......+|+|||++|+.+..+            ..
T Consensus       189 ~~--~~~~l~~~~~d~----------~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d------------~~  244 (577)
T 2ymu_A          189 SP--DGQTIASASDDK----------TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD------------KT  244 (577)
T ss_dssp             CT--TSSCEEEEETTS----------EEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETT------------SC
T ss_pred             cC--CCCEEEEEcCCC----------EEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCC------------CE
Confidence            78  888888766553          5555566666666776776666667899999999987644            35


Q ss_pred             EEEEEcCCCceeEEEeccCC--cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceee
Q 004971          251 IYIFLTRDGTQRVKIVENGG--WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATS  328 (721)
Q Consensus       251 i~~~d~~~g~~~~l~~~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  328 (721)
                      |.+|+..+.....+..+...  ..+|+||++.+++.  ..++.+.+|..   .+.       ....+..+...+..++|+
T Consensus       245 i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~--~~d~~i~~w~~---~~~-------~~~~~~~h~~~v~~~~~~  312 (577)
T 2ymu_A          245 VKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASA--SDDKTVKLWNR---NGQ-------LLQTLTGHSSSVWGVAFS  312 (577)
T ss_dssp             EEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEE--ETTSCEEEEET---TSC-------EEEEECCCSSCEEEEEEC
T ss_pred             EEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEE--eCCCEEEEEeC---CCc-------EEEEEecCCCCeEEEEEC
Confidence            77888643333333222222  45899999866632  33688888842   222       345556666677889999


Q ss_pred             cCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEecc
Q 004971          329 PGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK  408 (721)
Q Consensus       329 p~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  408 (721)
                      | |++.|+...     .+..|.+||+.+.....+   ..+...+..++|+|||+.|+....++.         +.+++..
T Consensus       313 ~-~~~~l~t~~-----~d~~i~~w~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~~~~dg~---------v~~~~~~  374 (577)
T 2ymu_A          313 P-DGQTIASAS-----DDKTVKLWNRNGQHLQTL---TGHSSSVWGVAFSPDGQTIASASDDKT---------VKLWNRN  374 (577)
T ss_dssp             T-TSSEEEEEE-----TTSCEEEEETTSCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSE---------EEEEETT
T ss_pred             C-CCCEEEEEe-----CCCeEEEEeCCCCeeEEE---eCCCCCEEEEEECCCCCEEEEEeCCCE---------EEEEcCC
Confidence            9 999988754     334599999876654333   345666778999999999988665443         4444433


Q ss_pred             CCC-CcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCC
Q 004971          409 SPL-PDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASES  484 (721)
Q Consensus       409 ~~~-~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~  484 (721)
                      +.. ..+.........++|+|||++|+..+ ++.|.+|+..+.....+.  ...+..++|+||++.|+..+       .+
T Consensus       375 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-------~d  447 (577)
T 2ymu_A          375 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASAS-------DD  447 (577)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE-------TT
T ss_pred             CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEc-------CC
Confidence            221 11111222334578999999999885 678999997665555554  55678899999999999886       56


Q ss_pred             CcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeE
Q 004971          485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN  564 (721)
Q Consensus       485 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~  564 (721)
                      +.+.+|+.  .+.    ....+..+...+..++|+|||++|+..+.   +..|++||.. ++.  +..+..+...+..++
T Consensus       448 ~~v~~w~~--~~~----~~~~~~~~~~~v~~~~~spd~~~las~~~---d~~i~iw~~~-~~~--~~~~~~h~~~v~~l~  515 (577)
T 2ymu_A          448 KTVKLWNR--NGQ----LLQTLTGHSSSVRGVAFSPDGQTIASASD---DKTVKLWNRN-GQL--LQTLTGHSSSVRGVA  515 (577)
T ss_dssp             SEEEEEET--TSC----EEEEEECCSSCEEEEEECTTSCEEEEEET---TSEEEEEETT-SCE--EEEEECCSSCEEEEE
T ss_pred             CEEEEEEC--CCC----EEEEEcCCCCCEEEEEEcCCCCEEEEEeC---CCEEEEEcCC-CCE--EEEEeCCCCCEEEEE
Confidence            78888874  332    56677777777888999999999998887   7889999975 443  667777777788999


Q ss_pred             EccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       565 ~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      |||||++|+.++.++       .|++||..+.....+.  +|...+..++|+|||++|+..+.+.
T Consensus       516 ~s~dg~~l~s~~~dg-------~v~lwd~~~~~~~~~~--~h~~~v~~~~fs~dg~~l~s~~~D~  571 (577)
T 2ymu_A          516 FSPDGQTIASASDDK-------TVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDGQTIASASSDK  571 (577)
T ss_dssp             ECTTSSCEEEEETTS-------EEEEECTTSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             EcCCCCEEEEEECcC-------EEEEEeCCCCEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            999999999988775       8999997654343333  3778889999999999998877665

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=3.7e-27  Score=253.29  Aligned_cols=319  Identities=18%  Similarity=0.245  Sum_probs=235.5

Q ss_pred             cccCceeecCCCCEEE-EEEe---cCCCCeeeEEEEEC--CCCceEEeecccCCCCcccCcEEcC--------------C
Q 004971          321 HAFTPATSPGNNKFIA-VATR---RPTSSYRHIELFDL--VKNKFIELTRFVSPKTHHLNPFISP--------------D  380 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la-~~~~---~~g~~~~~l~l~dl--~tg~~~~l~~~~~~~~~~~~~~~Sp--------------d  380 (721)
                      .+....|++ .|..++ ....   ..|..+..+++||+  .+++...-.....+...+...++++              .
T Consensus        64 ~~~~~~w~~-~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           64 EVQPAAWSA-LGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GCCHHHHHT-TTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             CcCHHHHHh-cCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            344567888 886544 3321   12334457999999  8887432122233333344444443              3


Q ss_pred             CCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEeC----CcEEEEECCCCceEEEe
Q 004971          381 SSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVEF----PGVYVVNSDGSNRRQVY  455 (721)
Q Consensus       381 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~~----~~l~v~d~~~g~~~~l~  455 (721)
                      +.+|++........   ....++++++.+... .+.........++|||||++|++.+.    ..|++||+.+++.+.+.
T Consensus       143 ~~~l~~~s~~~~~~---~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~  219 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQ---FPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA  219 (415)
T ss_dssp             TCEEEEEEECSSSS---CCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEEecCCCC---ccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee
Confidence            78888887764310   013688888865422 22223334456899999999999953    48999999999887776


Q ss_pred             --ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCC
Q 004971          456 --FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG  533 (721)
Q Consensus       456 --~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g  533 (721)
                        .+.+..++|||||++|+++..      .++...||.++..++    ....+..+...+..++|||||++|++.+.+++
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~------~~g~~~i~~~d~~~~----~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g  289 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALS------KTGSLNLYVMDLASG----QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG  289 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEEC------TTSSCEEEEEETTTC----CEEECCCCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred             cCCCcccCEEEcCCCCEEEEEEe------cCCCceEEEEECCCC----CEEeCcCCCCcccceEECCCCCEEEEEECCCC
Confidence              456789999999999998763      345667777777664    66778777777788999999999999997666


Q ss_pred             ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCe
Q 004971          534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHP  613 (721)
Q Consensus       534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~  613 (721)
                      ..+||+||+.+++   ...++.+...+..++|||||++|++...+.    +...|++||+.+++.+.++.  + ..+..+
T Consensus       290 ~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~spdG~~l~~~~~~~----g~~~i~~~d~~~~~~~~l~~--~-~~~~~~  359 (415)
T 2hqs_A          290 RPQVYKVNINGGA---PQRITWEGSQNQDADVSSDGKFMVMVSSNG----GQQHIAKQDLATGGVQVLSS--T-FLDETP  359 (415)
T ss_dssp             SCEEEEEETTSSC---CEECCCSSSEEEEEEECTTSSEEEEEEECS----SCEEEEEEETTTCCEEECCC--S-SSCEEE
T ss_pred             CcEEEEEECCCCC---EEEEecCCCcccCeEECCCCCEEEEEECcC----CceEEEEEECCCCCEEEecC--C-CCcCCe
Confidence            7799999999887   566765555567899999999999998763    45789999999998877653  2 367889


Q ss_pred             EECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCCc
Q 004971          614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF  677 (721)
Q Consensus       614 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~~  677 (721)
                      +|+|||++|++.+.+.+.              ..||+||++++..++|+.+.+.+..|+|+|..
T Consensus       360 ~~spdg~~l~~~s~~~~~--------------~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          360 SLAPNGTMVIYSSSQGMG--------------SVLNLVSTDGRFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             EECTTSSEEEEEEEETTE--------------EEEEEEETTSCCEEECCCSSSEEEEEEECCCC
T ss_pred             EEcCCCCEEEEEEcCCCc--------------cEEEEEECCCCcEEEeeCCCCCCcCCcccccc
Confidence            999999999999887653              25999999999999999988889999999964

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=3.1e-26  Score=281.39  Aligned_cols=476  Identities=12%  Similarity=0.059  Sum_probs=319.3

Q ss_pred             eeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeecCCceeEEeeeecCcccccccchh
Q 004971           60 EIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTA  139 (721)
Q Consensus        60 ~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~  139 (721)
                      ...+..|...+...+|||||+                           +|+ ++..+|.+.||...  +++.   ...  
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~---------------------------~l~-s~~~d~~i~vw~~~--~~~~---~~~--  652 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQ---------------------------RIA-SCGADKTLQVFKAE--TGEK---LLD--  652 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSS---------------------------EEE-EEETTSCEEEEETT--TCCE---EEE--
T ss_pred             eEEEecccccEEEEEECCCCC---------------------------EEE-EEeCCCeEEEEECC--CCCE---EEE--
Confidence            345678889999999999997                           665 55678888888764  3431   111  


Q ss_pred             hh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcce-EeecCCCCC
Q 004971          140 LE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT-RRLTPYGVA  217 (721)
Q Consensus       140 l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~-~~lt~~~~~  217 (721)
                      +. |..     .|.  .+       .|     +|  ||++|+..+.++          .|...++.+++. ..+..+...
T Consensus       653 ~~~h~~-----~v~--~~-------~~-----s~--~~~~l~s~~~d~----------~v~vwd~~~~~~~~~~~~~~~~  701 (1249)
T 3sfz_A          653 IKAHED-----EVL--CC-------AF-----SS--DDSYIATCSADK----------KVKIWDSATGKLVHTYDEHSEQ  701 (1249)
T ss_dssp             ECCCSS-----CEE--EE-------EE-----CT--TSSEEEEEETTS----------EEEEEETTTCCEEEEEECCSSC
T ss_pred             eccCCC-----CEE--EE-------EE-----ec--CCCEEEEEeCCC----------eEEEEECCCCceEEEEcCCCCc
Confidence            33 221     111  11       57     99  999988876553          566666666654 455566666


Q ss_pred             ccccccCCCC--CEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCC---cceeccCCeEEEEeccCCCCcE
Q 004971          218 DFSPAVSPSG--KYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGG---WPCWVDESTLFFHRKSEEDDWI  292 (721)
Q Consensus       218 ~~~p~~SPDG--~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~---~~~ws~dg~l~~~~~~~~~g~~  292 (721)
                      ....+|+|++  ..++..+.+            ..|.+|++.+++..........   ...|+||++++++  ...++.+
T Consensus       702 v~~~~~~~~~~~~~l~sg~~d------------~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s--~s~dg~v  767 (1249)
T 3sfz_A          702 VNCCHFTNKSNHLLLATGSND------------FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLAS--CSADGTL  767 (1249)
T ss_dssp             EEEEEECSSSSCCEEEEEETT------------SCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEE--EESSSEE
T ss_pred             EEEEEEecCCCceEEEEEeCC------------CeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEE--EECCCeE
Confidence            6777899954  455555433            4699999998886655433322   4589999987664  3337888


Q ss_pred             EEEEEecCCCcceec--------------------------------------------ccc-ceEE-eCCCCCcccCce
Q 004971          293 SVYKVILPQTGLVST--------------------------------------------ESV-SIQR-VTPPGLHAFTPA  326 (721)
Q Consensus       293 ~l~~~~~~~~~~~~~--------------------------------------------~~~-~~~~-~~~~~~~~~~~~  326 (721)
                      .+|++..........                                            ..+ .... ...+...+..++
T Consensus       768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~  847 (1249)
T 3sfz_A          768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD  847 (1249)
T ss_dssp             EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred             EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence            888653321000000                                            000 0000 012233445566


Q ss_pred             eecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEe
Q 004971          327 TSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLEN  406 (721)
Q Consensus       327 ~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~  406 (721)
                      |+| +|+.++...     .+..|.+||+.+++.  +.....+...+..++|+|+|+.|+..+.++.         +.+++
T Consensus       848 ~sp-~~~~l~~~~-----~dg~v~vwd~~~~~~--~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~---------v~vw~  910 (1249)
T 3sfz_A          848 FSP-YDHLAVIAL-----SQYCVELWNIDSRLK--VADCRGHLSWVHGVMFSPDGSSFLTASDDQT---------IRVWE  910 (1249)
T ss_dssp             ECS-STTEEEEEC-----SSSCEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSC---------EEEEE
T ss_pred             EcC-CCCEEEEEe-----CCCeEEEEEcCCCce--eeecCCCccceEEEEECCCCCEEEEEeCCCe---------EEEEE
Confidence            777 777666532     345699999998863  3344566777889999999999998776554         23333


Q ss_pred             ccCC--------------------------------------CCcc-eecccCCCCceeCcCCCEEEEEe-CCcEEEEEC
Q 004971          407 IKSP--------------------------------------LPDI-SLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNS  446 (721)
Q Consensus       407 ~~~~--------------------------------------~~~~-~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~  446 (721)
                      +...                                      ...+ .........++|+|+|+.+++.. ++.|++|++
T Consensus       911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~  990 (1249)
T 3sfz_A          911 TKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL  990 (1249)
T ss_dssp             HHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEET
T ss_pred             ccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence            2110                                      0000 00111233468999999999885 789999999


Q ss_pred             CCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCC
Q 004971          447 DGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGK  523 (721)
Q Consensus       447 ~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~  523 (721)
                      .+++.....   ...+..++|+|||++|+..+       .++.+.+|++...      ....+..+...+..+.|+|+++
T Consensus       991 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-------~dg~i~vwd~~~~------~~~~~~~~~~~v~~~~~~~~~~ 1057 (1249)
T 3sfz_A          991 PNNRVFSSGVGHKKAVRHIQFTADGKTLISSS-------EDSVIQVWNWQTG------DYVFLQAHQETVKDFRLLQDSR 1057 (1249)
T ss_dssp             TTTSCEEECCCCSSCCCCEEECSSSSCEEEEC-------SSSBEEEEETTTT------EEECCBCCSSCEEEEEECSSSE
T ss_pred             CCCceeeecccCCCceEEEEECCCCCEEEEEc-------CCCEEEEEECCCC------ceEEEecCCCcEEEEEEcCCCc
Confidence            888755443   45788999999999999886       5788999986542      3444555566778899999876


Q ss_pred             EEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971          524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ  603 (721)
Q Consensus       524 ~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  603 (721)
                       ++..+.   +..|++||+.+++.  ...+..+...+..++|+|||+.|+.++.++       .|++||+.+++......
T Consensus      1058 -l~~~~~---dg~v~vwd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~-------~v~iwd~~~~~~~~~l~ 1124 (1249)
T 3sfz_A         1058 -LLSWSF---DGTVKVWNVITGRI--ERDFTCHQGTVLSCAISSDATKFSSTSADK-------TAKIWSFDLLSPLHELK 1124 (1249)
T ss_dssp             -EEEEES---SSEEEEEETTTTCC--CEEEECCSSCCCCEEECSSSSSCEEECCSS-------CCCEECSSSSSCSBCCC
T ss_pred             -EEEEEC---CCcEEEEECCCCce--eEEEcccCCcEEEEEECCCCCEEEEEcCCC-------cEEEEECCCcceeeeec
Confidence             445554   67899999998885  566666677788999999999999888775       79999998887554433


Q ss_pred             cCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-Ee---------ccCCCCCCCcee
Q 004971          604 SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RL---------TQNSFEDGTPAW  673 (721)
Q Consensus       604 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l---------t~~~~~~~~~~~  673 (721)
                       ++...+..++|||||++|+..+.++.                 |++||+.+++.. .+         ..+...+...+|
T Consensus      1125 -~h~~~v~~~~~s~dg~~lat~~~dg~-----------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f 1186 (1249)
T 3sfz_A         1125 -GHNGCVRCSAFSLDGILLATGDDNGE-----------------IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCF 1186 (1249)
T ss_dssp             -CCSSCEEEEEECSSSSEEEEEETTSC-----------------CCEEESSSSCCCCCCCCCC-------CCSCCCEEEE
T ss_pred             -cCCCcEEEEEECCCCCEEEEEeCCCE-----------------EEEEECCCCceEEEeccccccccccccCceEEEEEE
Confidence             26677889999999999998876653                 888999877643 22         346667888999


Q ss_pred             cCC
Q 004971          674 GPR  676 (721)
Q Consensus       674 sp~  676 (721)
                      +|+
T Consensus      1187 s~d 1189 (1249)
T 3sfz_A         1187 SPD 1189 (1249)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            997

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.95  E-value=1.8e-25  Score=274.67  Aligned_cols=470  Identities=13%  Similarity=0.059  Sum_probs=322.1

Q ss_pred             eeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeecCCceeEEeeeecCcccccccchh
Q 004971           60 EIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTA  139 (721)
Q Consensus        60 ~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~  139 (721)
                      ...+..|...+...+|+|++..                          .+++++..+|.+.+|...  .+.    ... .
T Consensus       692 ~~~~~~~~~~v~~~~~~~~~~~--------------------------~~l~sg~~d~~v~vwd~~--~~~----~~~-~  738 (1249)
T 3sfz_A          692 VHTYDEHSEQVNCCHFTNKSNH--------------------------LLLATGSNDFFLKLWDLN--QKE----CRN-T  738 (1249)
T ss_dssp             EEEEECCSSCEEEEEECSSSSC--------------------------CEEEEEETTSCEEEEETT--SSS----EEE-E
T ss_pred             EEEEcCCCCcEEEEEEecCCCc--------------------------eEEEEEeCCCeEEEEECC--Ccc----hhh-e
Confidence            4556788888889999997540                          455666788888888764  333    111 0


Q ss_pred             hh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEe-ecC----
Q 004971          140 LE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRR-LTP----  213 (721)
Q Consensus       140 l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~-lt~----  213 (721)
                      +. +..     .+.  .+       .|     +|  +|+.|+..+.++          .+...++.++.... +..    
T Consensus       739 ~~~h~~-----~v~--~~-------~~-----sp--~~~~l~s~s~dg----------~v~vwd~~~~~~~~~~~~~~~~  787 (1249)
T 3sfz_A          739 MFGHTN-----SVN--HC-------RF-----SP--DDELLASCSADG----------TLRLWDVRSANERKSINVKRFF  787 (1249)
T ss_dssp             ECCCSS-----CEE--EE-------EE-----CS--STTEEEEEESSS----------EEEEEEGGGTEEEEEEECCCCC
T ss_pred             ecCCCC-----CEE--EE-------EE-----ec--CCCEEEEEECCC----------eEEEEeCCCCcccceecccccc
Confidence            22 221     111  11       56     99  999888877653          45555554543322 110    


Q ss_pred             ---------CCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEe-ccCC---cceeccCCeE
Q 004971          214 ---------YGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIV-ENGG---WPCWVDESTL  280 (721)
Q Consensus       214 ---------~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~-~~~~---~~~ws~dg~l  280 (721)
                               ........+|||||++++.+.             ...|++|+..++....... ....   ...|+|++++
T Consensus       788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-------------~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  854 (1249)
T 3sfz_A          788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAA-------------KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHL  854 (1249)
T ss_dssp             --------CCCCCBCCCCBCTTSSEEEEEE-------------TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTE
T ss_pred             cccCCccccccceEEEEEECCCCCEEEEEc-------------CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCE
Confidence                     111334558999999999875             2478999998887655543 2222   4589999987


Q ss_pred             EEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce-
Q 004971          281 FFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF-  359 (721)
Q Consensus       281 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~-  359 (721)
                      +++  ...++.+.+|.....  .       ....+..+...+..++|+| +|++++..+     .++.|.+||+.+... 
T Consensus       855 l~~--~~~dg~v~vwd~~~~--~-------~~~~~~~h~~~v~~v~~sp-dg~~l~s~s-----~dg~v~vw~~~~~~~~  917 (1249)
T 3sfz_A          855 AVI--ALSQYCVELWNIDSR--L-------KVADCRGHLSWVHGVMFSP-DGSSFLTAS-----DDQTIRVWETKKVCKN  917 (1249)
T ss_dssp             EEE--ECSSSCEEEEETTTT--E-------EEEEECCCSSCEEEEEECT-TSSEEEEEE-----TTSCEEEEEHHHHHSC
T ss_pred             EEE--EeCCCeEEEEEcCCC--c-------eeeecCCCccceEEEEECC-CCCEEEEEe-----CCCeEEEEEcccccee
Confidence            663  344788999954322  1       4555666766788999999 999988754     334589998653210 


Q ss_pred             -----------------------------EEeec-----ccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEE
Q 004971          360 -----------------------------IELTR-----FVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLE  405 (721)
Q Consensus       360 -----------------------------~~l~~-----~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~  405 (721)
                                                   .....     .......+..++|+|+|+.+++...++.         +.++
T Consensus       918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~---------i~i~  988 (1249)
T 3sfz_A          918 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGA---------IKII  988 (1249)
T ss_dssp             CSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSC---------CEEE
T ss_pred             eeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCC---------EEEE
Confidence                                         00000     0011234567899999999998765554         5556


Q ss_pred             eccCCCCc--ceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCC
Q 004971          406 NIKSPLPD--ISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEF  480 (721)
Q Consensus       406 ~~~~~~~~--~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~  480 (721)
                      ++..+...  +.........++|+|||++|+..+ ++.|.+|++.+++...+.  ...+..+.|+|+++.++..      
T Consensus       989 d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~------ 1062 (1249)
T 3sfz_A          989 ELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS------ 1062 (1249)
T ss_dssp             ETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEE------
T ss_pred             EcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE------
Confidence            65544221  112233456689999999999884 789999999998766554  5677889999988654443      


Q ss_pred             CCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCc
Q 004971          481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD  560 (721)
Q Consensus       481 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~  560 (721)
                        .++.+.+|++....     ....+..+...+..++|+|||++|+..+.   +..|++||+.+++.  +..+..+...+
T Consensus      1063 --~dg~v~vwd~~~~~-----~~~~~~~~~~~v~~~~~s~d~~~l~s~s~---d~~v~iwd~~~~~~--~~~l~~h~~~v 1130 (1249)
T 3sfz_A         1063 --FDGTVKVWNVITGR-----IERDFTCHQGTVLSCAISSDATKFSSTSA---DKTAKIWSFDLLSP--LHELKGHNGCV 1130 (1249)
T ss_dssp             --SSSEEEEEETTTTC-----CCEEEECCSSCCCCEEECSSSSSCEEECC---SSCCCEECSSSSSC--SBCCCCCSSCE
T ss_pred             --CCCcEEEEECCCCc-----eeEEEcccCCcEEEEEECCCCCEEEEEcC---CCcEEEEECCCcce--eeeeccCCCcE
Confidence              46788888875543     55667777778899999999999998876   67899999998875  55666667778


Q ss_pred             eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee--------ecCCCCCcCCeEECCCCCEEEEEEecCCCc
Q 004971          561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI--------QSGSAGRANHPYFSPDGKSIVFTSDYGGIS  632 (721)
Q Consensus       561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~--------~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~  632 (721)
                      ..++|||||++|++++.++       .|++||+.+++.....        ...+...+..++|||||++|+..+   +  
T Consensus      1131 ~~~~~s~dg~~lat~~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~---g-- 1198 (1249)
T 3sfz_A         1131 RCSAFSLDGILLATGDDNG-------EIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG---G-- 1198 (1249)
T ss_dssp             EEEEECSSSSEEEEEETTS-------CCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES---S--
T ss_pred             EEEEECCCCCEEEEEeCCC-------EEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC---C--
Confidence            8999999999999998875       7999999887654322        012566788999999999998653   2  


Q ss_pred             CCCCCCCCCCCCCccEEEEEcCCCCe-EEeccCCCCCCCceecCC
Q 004971          633 AEPISTPHQYQPYGEIFKIKLDGSDL-KRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       633 ~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt~~~~~~~~~~~sp~  676 (721)
                                    .|.+||+.+++. ..+..+...+..++|+|+
T Consensus      1199 --------------~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~d 1229 (1249)
T 3sfz_A         1199 --------------YLKWWNVATGDSSQTFYTNGTNLKKIHVSPD 1229 (1249)
T ss_dssp             --------------SEEEBCSSSCBCCCCCCCSSCCCCCCEECSS
T ss_pred             --------------eEEEEECCCCceeeeeeccCCcccEEEECCC
Confidence                          399999988765 455556666788999997

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.95  E-value=4.8e-26  Score=242.60  Aligned_cols=310  Identities=18%  Similarity=0.212  Sum_probs=211.9

Q ss_pred             ceEEeCCCCCccc-----CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEE
Q 004971          311 SIQRVTPPGLHAF-----TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVG  385 (721)
Q Consensus       311 ~~~~~~~~~~~~~-----~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~  385 (721)
                      ...+++.+.....     .++||| ||++|+|.....+  ...|++||+++++.+++...  +......+.|||||++|+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g--~~~l~~~d~~~g~~~~lt~~--~~~~~~~~~~spdg~~l~   96 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTR-DGSKLLFGGAFDG--PWNYYLLDLNTQVATQLTEG--RGDNTFGGFLSPDDDALF   96 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCT-TSCEEEEEECTTS--SCEEEEEETTTCEEEECCCS--SCBCSSSCEECTTSSEEE
T ss_pred             ceEEecCCcccccchhhcCccCCC-CCCEEEEEEcCCC--CceEEEEeCCCCceEEeeeC--CCCCccceEEcCCCCEEE
Confidence            5666666543333     489999 9999999876433  34699999999987777632  233344689999999999


Q ss_pred             EEEeeCCCCCCCCcceeEEEeccCCCCcc-eecccC-C--CCceeCcCCCEEEEEe-----------------------C
Q 004971          386 YHKCRGGSTREDGNNQLLLENIKSPLPDI-SLFRFD-G--SFPSFSPKGDRIAFVE-----------------------F  438 (721)
Q Consensus       386 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~-~--~~~~~SpDG~~la~~~-----------------------~  438 (721)
                      |...+         ..++++++.++.... ...... .  ....++|||+.++...                       .
T Consensus        97 ~~~~~---------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (388)
T 3pe7_A           97 YVKDG---------RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC  167 (388)
T ss_dssp             EEETT---------TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC
T ss_pred             EEeCC---------CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc
Confidence            97743         247888877653321 111111 0  1123489999887541                       2


Q ss_pred             CcEEEEECCCCceEEEe--ecCceeeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCC--CC
Q 004971          439 PGVYVVNSDGSNRRQVY--FKNAFSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK--NN  513 (721)
Q Consensus       439 ~~l~v~d~~~g~~~~l~--~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~--~~  513 (721)
                      ..|+++|+.+++.+.+.  ...+..+.||| ||++|+|...+.   .......||.++.++.    ..+.+.....  ..
T Consensus       168 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~---~~~~~~~l~~~d~~~~----~~~~l~~~~~~~~~  240 (388)
T 3pe7_A          168 CRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGP---HDLVDARMWLINEDGT----NMRKVKTHAEGESC  240 (388)
T ss_dssp             EEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSC---TTTSSCSEEEEETTSC----CCEESCCCCTTEEE
T ss_pred             ceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecC---CCCCcceEEEEeCCCC----ceEEeeeCCCCccc
Confidence            57999999999988887  34567899999 999999987521   1223567888887764    6677776552  35


Q ss_pred             cceEEccCCCEEEEEEeeCCce--eEEEEECCCCcccceEECcCCC---cCceeeEEccCCCEEEEEEccCCC--CCCce
Q 004971          514 AFPSVSPDGKWIVFRSTRTGYK--NLYIMDAEGGEGYGLHRLTEGP---WSDTMCNWSPDGEWIAFASDRDNP--GSGSF  586 (721)
Q Consensus       514 ~~~~~SpDg~~l~~~s~~~g~~--~l~~~d~~~g~~~~~~~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~--~~~~~  586 (721)
                      ..++|||||++|+|.+...+..  .||+||+++++.+.+..+....   .....+.|||||++|++...+...  ..+..
T Consensus       241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  320 (388)
T 3pe7_A          241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDP  320 (388)
T ss_dssp             EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCC
T ss_pred             ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCC
Confidence            6789999999999998876554  4999999999843232222100   012345899999999987643100  01446


Q ss_pred             eEEEEecCCCceEEeeecCCCC-----------CcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971          587 EMYLIHPNGTGLRKLIQSGSAG-----------RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       587 ~i~~~d~~~~~~~~l~~~~~~~-----------~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                      .||+||+++++.++++..  ..           .+..++|||||++|++.+...+.              .+||.+++..
T Consensus       321 ~i~~~d~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~--------------~~l~~~~l~~  384 (388)
T 3pe7_A          321 FLYVFNMKNGTQHRVARH--DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGK--------------PALYLATLPE  384 (388)
T ss_dssp             EEEEEETTTTEEEEEEEC--CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSS--------------CEEEEEECCG
T ss_pred             EEEEEeccCCceEEeccc--cCcccccccccccCCCCccCCCCCCEEEEEecCCCc--------------eeEEEEECCh
Confidence            899999999988888753  23           46789999999999999987764              3799999875


Q ss_pred             CC
Q 004971          656 SD  657 (721)
Q Consensus       656 ~~  657 (721)
                      +.
T Consensus       385 ~~  386 (388)
T 3pe7_A          385 SV  386 (388)
T ss_dssp             GG
T ss_pred             hc
Confidence            43

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.94  E-value=1.6e-24  Score=250.78  Aligned_cols=379  Identities=12%  Similarity=0.052  Sum_probs=243.4

Q ss_pred             ccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCC------c--ceeccCCe-EEEEeccC-
Q 004971          218 DFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGG------W--PCWVDEST-LFFHRKSE-  287 (721)
Q Consensus       218 ~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~------~--~~ws~dg~-l~~~~~~~-  287 (721)
                      ...++|+|||++|+..   +           ..|++|++.+|+.+++......      .  ++|||||+ +++..... 
T Consensus        19 ~~~~~w~~dg~~~~~~---~-----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~   84 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ---E-----------NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK   84 (740)
T ss_dssp             CCCEEECSSSEEEEEE---T-----------TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEE
T ss_pred             ccccEECCCCcEEEEc---C-----------CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCee
Confidence            4566999999887773   2           4799999999998777643321      2  57899997 55532211 


Q ss_pred             ---CCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeec
Q 004971          288 ---EDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTR  364 (721)
Q Consensus       288 ---~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~  364 (721)
                         ......+| +.+..++       +..+++.+...+..++||| ||++|+|...      ..|++||+.+++.++++.
T Consensus        85 ~~r~~~~~~~~-~~d~~~~-------~~~~l~~~~~~~~~~~~SP-dG~~la~~~~------~~i~~~~~~~~~~~~lt~  149 (740)
T 4a5s_A           85 QWRHSYTASYD-IYDLNKR-------QLITEERIPNNTQWVTWSP-VGHKLAYVWN------NDIYVKIEPNLPSYRITW  149 (740)
T ss_dssp             CSSSCEEEEEE-EEETTTT-------EECCSSCCCTTEEEEEECS-STTCEEEEET------TEEEEESSTTSCCEECCS
T ss_pred             eEEEccceEEE-EEECCCC-------cEEEcccCCCcceeeEECC-CCCEEEEEEC------CeEEEEECCCCceEEEcC
Confidence               01123455 3333333       4556666555678899999 9999999743      249999999998777653


Q ss_pred             ccCCC----------------CcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCc
Q 004971          365 FVSPK----------------THHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP  428 (721)
Q Consensus       365 ~~~~~----------------~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Sp  428 (721)
                      .....                .....+.|||||++|+|.+.+...      ..++.........  ... .....+.+.+
T Consensus       150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~------v~~~~~~~~~~~~--~~~-~~~~~~~yp~  220 (740)
T 4a5s_A          150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTE------VPLIEYSFYSDES--LQY-PKTVRVPYPK  220 (740)
T ss_dssp             CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTT------CCEEEEEECCSTT--CSS-CEEEEEECCB
T ss_pred             CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccC------CceEEEEeecCCC--CCC-CcceeecCCC
Confidence            21111                112358899999999998876652      2344333222110  000 0011234444


Q ss_pred             CCCEEEEEeCCcEEEEECCC---C---ceEEEe--------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971          429 KGDRIAFVEFPGVYVVNSDG---S---NRRQVY--------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV  494 (721)
Q Consensus       429 DG~~la~~~~~~l~v~d~~~---g---~~~~l~--------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~  494 (721)
                      +|...   ....|++||+++   +   +...+.        ...+..++|||||+.+++....     ......|+.++.
T Consensus       221 ~G~~~---~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r-----~~~~~~i~~~d~  292 (740)
T 4a5s_A          221 AGAVN---PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRR-----IQNYSVMDICDY  292 (740)
T ss_dssp             TTSCC---CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEES-----STTEEEEEEEEE
T ss_pred             CcCcC---CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCC-----CCCEEEEEEEEC
Confidence            44321   112699999998   7   555554        1235688999999988876542     233445555555


Q ss_pred             cCCCC---ccceEEc--ccCCCC-----CcceEEccCCCEEE-EEEeeCCceeEEEEECCCCcccceEECcCCCcCceee
Q 004971          495 DDVDG---VSAVRRL--TTNGKN-----NAFPSVSPDGKWIV-FRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC  563 (721)
Q Consensus       495 ~~~~~---~~~~~~l--~~~~~~-----~~~~~~SpDg~~l~-~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~  563 (721)
                      .++..   ......+  ..+...     ...++|||||++|+ +.+.++|..+||++|+++++   .++|+.+.+.+..+
T Consensus       293 ~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~---~~~lT~g~~~v~~~  369 (740)
T 4a5s_A          293 DESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD---CTFITKGTWEVIGI  369 (740)
T ss_dssp             ETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS---CEESCCSSSCEEEE
T ss_pred             CCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc---eEecccCCEEEEEE
Confidence            44300   0011222  112222     34799999999998 88888889999999999887   78899887665554


Q ss_pred             EEccCCCEEEEEEcc--CCCCCCceeEEEEecCCCceE-Eeeec--CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCC
Q 004971          564 NWSPDGEWIAFASDR--DNPGSGSFEMYLIHPNGTGLR-KLIQS--GSAGRANHPYFSPDGKSIVFTSDYGGISAEPIST  638 (721)
Q Consensus       564 ~~SpDG~~l~~~~~~--~~~~~~~~~i~~~d~~~~~~~-~l~~~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~  638 (721)
                       +++||++|+|.+..  ..  .+..+||.+++++++.+ .++..  ........+.|||||+++++.....+.       
T Consensus       370 -~~~d~~~i~f~~~~~~~~--~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~-------  439 (740)
T 4a5s_A          370 -EALTSDYLYYISNEYKGM--PGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGL-------  439 (740)
T ss_dssp             -EEECSSEEEEEESCGGGC--TTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSS-------
T ss_pred             -EEEeCCEEEEEEecCCCC--CceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCC-------
Confidence             44779999999875  21  25679999999887655 45421  013456789999999999887765432       


Q ss_pred             CCCCCCCccEEEEEcCCCCeEEec
Q 004971          639 PHQYQPYGEIFKIKLDGSDLKRLT  662 (721)
Q Consensus       639 ~~~~~~~~~l~~~d~~~~~~~~lt  662 (721)
                             +.++++++++++..++.
T Consensus       440 -------p~~~l~~~~~~~~~~~l  456 (740)
T 4a5s_A          440 -------PLYTLHSSVNDKGLRVL  456 (740)
T ss_dssp             -------CEEEEEETTTTEEEEEE
T ss_pred             -------CEEEEEECCCCcEEEEe
Confidence                   36899998887665554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=1.4e-24  Score=251.95  Aligned_cols=362  Identities=16%  Similarity=0.220  Sum_probs=241.8

Q ss_pred             ccccccCCCCCEEEEEec-CCCCCCcccceeeeeEEEEEcCCCceeEEEeccCCcceeccCCeEEEEeccCCCCcEEEEE
Q 004971          218 DFSPAVSPSGKYTAVASY-GNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYK  296 (721)
Q Consensus       218 ~~~p~~SPDG~~la~~~~-~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~ws~dg~l~~~~~~~~~g~~~l~~  296 (721)
                      ...++|||||++|++++. ++.       .....||+|++++|+.+++.......    +||+.+.  ...  ..   . 
T Consensus        39 ~~~~~~SpdG~~la~~~~~d~~-------~~~~~i~~~d~~~g~~~~~~~~~~~~----~~~~~~~--~~~--~~---~-   99 (741)
T 2ecf_A           39 LMKPKVAPDGSRVTFLRGKDSD-------RNQLDLWSYDIGSGQTRLLVDSKVVL----PGTETLS--DEE--KA---R-   99 (741)
T ss_dssp             CEEEEECTTSSEEEEEECCSSC-------TTEEEEEEEETTTCCEEEEECGGGTC-------------------------
T ss_pred             CCCceEecCCCEEEEEeccCCC-------CcccEEEEEECCCCceeEccchhhcc----ccccccc--chh--hh---h-
Confidence            456799999999999875 321       01358999999999988776432211    3433211  000  00   0 


Q ss_pred             EecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCC---ceEEeecccCCCCccc
Q 004971          297 VILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKN---KFIELTRFVSPKTHHL  373 (721)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg---~~~~l~~~~~~~~~~~  373 (721)
                          .         ...++. ....+..++||| ||++|++...      ..|++||+.++   +.+.+..   +...+.
T Consensus       100 ----~---------~~~~~~-~~~~v~~~~~Sp-Dg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~---~~~~~~  155 (741)
T 2ecf_A          100 ----R---------ERQRIA-AMTGIVDYQWSP-DAQRLLFPLG------GELYLYDLKQEGKAAVRQLTH---GEGFAT  155 (741)
T ss_dssp             ---------------------CCEESCCCEECT-TSSEEEEEET------TEEEEEESSSCSTTSCCBCCC---SSSCEE
T ss_pred             ----h---------hhhhhc-cccCcceeEECC-CCCEEEEEeC------CcEEEEECCCCCcceEEEccc---CCcccc
Confidence                0         011111 112457899999 9999999764      45999999988   6555432   345577


Q ss_pred             CcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceecccC-----------------CCCceeCcCCCEEEE
Q 004971          374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRFD-----------------GSFPSFSPKGDRIAF  435 (721)
Q Consensus       374 ~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~-----------------~~~~~~SpDG~~la~  435 (721)
                      .++|||||++|++...          ..++++++.++.. .++.....                 ...++|||||++|++
T Consensus       156 ~~~~SPDG~~la~~~~----------~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~  225 (741)
T 2ecf_A          156 DAKLSPKGGFVSFIRG----------RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAY  225 (741)
T ss_dssp             EEEECTTSSEEEEEET----------TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEE
T ss_pred             cccCCCCCCEEEEEeC----------CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEE
Confidence            8999999999999753          2478888765421 11111111                 256899999999999


Q ss_pred             Ee-CC---------------------------------cEEEEECCC-CceEEEe-----ecCceeeEEcCCCCeEEEEe
Q 004971          436 VE-FP---------------------------------GVYVVNSDG-SNRRQVY-----FKNAFSTVWDPVREAVVYTS  475 (721)
Q Consensus       436 ~~-~~---------------------------------~l~v~d~~~-g~~~~l~-----~~~~~~~~~spdg~~la~~~  475 (721)
                      .. +.                                 .|++||+++ ++...+.     ...+..+.| |||++|++..
T Consensus       226 ~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~  304 (741)
T 2ecf_A          226 ARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQR  304 (741)
T ss_dssp             EEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEE
T ss_pred             EEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEE
Confidence            83 22                                 789999998 8877665     134568999 9999999886


Q ss_pred             cCCCCCCCCCcEEEEEEEccCCCCccceEEcccC-C-C---CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce
Q 004971          476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTN-G-K---NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL  550 (721)
Q Consensus       476 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~-~-~---~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~  550 (721)
                      ..    .......|+.++..++    ....+... . .   ....++|||||+ +++.+.+++..+||.++..++    .
T Consensus       305 ~~----~~~~~~~i~~~d~~~g----~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~----~  371 (741)
T 2ecf_A          305 QS----RDQKKLDLVEVTLASN----QQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK----A  371 (741)
T ss_dssp             EE----TTSSEEEEEEEETTTC----CEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC----E
T ss_pred             ec----ccCCeEEEEEEECCCC----ceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC----e
Confidence            31    1235677788887664    44444332 2 1   345799999999 666766667778999997644    5


Q ss_pred             EECcCCCcCceee-EEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          551 HRLTEGPWSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       551 ~~l~~~~~~~~~~-~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      ..++.+...+..+ .|||||++|++......  .....||.++.+++..++++.   ...+..++|||||++|++.....
T Consensus       372 ~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~--~~~~~l~~~~~~g~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~  446 (741)
T 2ecf_A          372 AALTHGNWSVDELLAVDEKAGLAYFRAGIES--ARESQIYAVPLQGGQPQRLSK---APGMHSASFARNASVYVDSWSNN  446 (741)
T ss_dssp             EESCCSSSCEEEEEEEETTTTEEEEEECSSC--TTCBEEEEEETTCCCCEECCC---SCSEEEEEECTTSSEEEEEEEET
T ss_pred             eeeeecceEEEeEeEEeCCCCEEEEEEeCCC--CceEEEEEEEcCCCCeeeccc---CCCceEEEECCCCCEEEEEecCC
Confidence            6777776666666 59999999998887531  114567777776766676653   34457899999999999887765


Q ss_pred             CCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccC
Q 004971          630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN  664 (721)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~  664 (721)
                      ..+             +++|+++++++..+.|+.+
T Consensus       447 ~~p-------------~~~~l~~~~~~~~~~l~~~  468 (741)
T 2ecf_A          447 STP-------------PQIELFRANGEKIATLVEN  468 (741)
T ss_dssp             TEE-------------EEEEEEETTSCEEECSSCC
T ss_pred             CCC-------------CeEEEEEcCCCeEEEeccC
Confidence            432             4799999988877777753

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.93  E-value=9.7e-25  Score=232.46  Aligned_cols=318  Identities=19%  Similarity=0.184  Sum_probs=213.9

Q ss_pred             eEEEEeCCCcceEeecCCCCCccc-----cccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCCc
Q 004971          197 AVYSTELKTGLTRRLTPYGVADFS-----PAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGW  271 (721)
Q Consensus       197 ~l~~v~~~~g~~~~lt~~~~~~~~-----p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~  271 (721)
                      .+|.....++..++||.+......     |+|||||++|+|...+++         ..+||++++++|+.++++.     
T Consensus        12 ~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g---------~~~l~~~d~~~g~~~~lt~-----   77 (388)
T 3pe7_A           12 DTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDG---------PWNYYLLDLNTQVATQLTE-----   77 (388)
T ss_dssp             EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTS---------SCEEEEEETTTCEEEECCC-----
T ss_pred             eEEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCC---------CceEEEEeCCCCceEEeee-----
Confidence            778766677788899877654444     899999999999876433         3578888887766543310     


Q ss_pred             ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEE
Q 004971          272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIEL  351 (721)
Q Consensus       272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l  351 (721)
                                                                   .+......+.||| ||++|+|....     ..|++
T Consensus        78 ---------------------------------------------~~~~~~~~~~~sp-dg~~l~~~~~~-----~~l~~  106 (388)
T 3pe7_A           78 ---------------------------------------------GRGDNTFGGFLSP-DDDALFYVKDG-----RNLMR  106 (388)
T ss_dssp             ---------------------------------------------SSCBCSSSCEECT-TSSEEEEEETT-----TEEEE
T ss_pred             ---------------------------------------------CCCCCccceEEcC-CCCEEEEEeCC-----CeEEE
Confidence                                                         0011122567999 99999997632     35999


Q ss_pred             EECCCCceEEeecccCCCCcc--cCcEEcCCCCEEEEEEeeCCCC-------------CCCCcceeEEEeccCCCC-cce
Q 004971          352 FDLVKNKFIELTRFVSPKTHH--LNPFISPDSSRVGYHKCRGGST-------------REDGNNQLLLENIKSPLP-DIS  415 (721)
Q Consensus       352 ~dl~tg~~~~l~~~~~~~~~~--~~~~~Spdg~~l~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~-~~~  415 (721)
                      ||+++++.+.+....  ....  ....++|||+.++.........             .......+++.++.++.. .+.
T Consensus       107 ~d~~~g~~~~~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~  184 (388)
T 3pe7_A          107 VDLATLEENVVYQVP--AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL  184 (388)
T ss_dssp             EETTTCCEEEEEECC--TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE
T ss_pred             EECCCCcceeeeech--hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee
Confidence            999999877665432  2222  2234599999988655332110             001125688888876632 222


Q ss_pred             ecccCCCCceeCc-CCCEEEEEe-------CCcEEEEECCCCceEEEeec----CceeeEEcCCCCeEEEEecCCCCCCC
Q 004971          416 LFRFDGSFPSFSP-KGDRIAFVE-------FPGVYVVNSDGSNRRQVYFK----NAFSTVWDPVREAVVYTSGGPEFASE  483 (721)
Q Consensus       416 ~~~~~~~~~~~Sp-DG~~la~~~-------~~~l~v~d~~~g~~~~l~~~----~~~~~~~spdg~~la~~~~~~~~~~~  483 (721)
                      ........+.||| ||++|+|..       ...|+++++++++.+.+...    .+..+.|||||++|+|.+..    ..
T Consensus       185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~----~~  260 (388)
T 3pe7_A          185 QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYL----KG  260 (388)
T ss_dssp             EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEE----TT
T ss_pred             cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecC----CC
Confidence            2222234689999 999999984       34899999999888887732    35678999999999988742    12


Q ss_pred             CCcEEEEEEEccCCCCccceEEcccCCC------CCcceEEccCCCEEEEEEee------CCceeEEEEECCCCcccceE
Q 004971          484 SSEVDIISINVDDVDGVSAVRRLTTNGK------NNAFPSVSPDGKWIVFRSTR------TGYKNLYIMDAEGGEGYGLH  551 (721)
Q Consensus       484 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~SpDg~~l~~~s~~------~g~~~l~~~d~~~g~~~~~~  551 (721)
                      .....||.++..++    +.+.+.....      .....+|||||++|++....      .+...||+||+++++   +.
T Consensus       261 ~~~~~l~~~d~~~g----~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~  333 (388)
T 3pe7_A          261 SPDRFIYSADPETL----ENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT---QH  333 (388)
T ss_dssp             CCCEEEEEECTTTC----CEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE---EE
T ss_pred             CCcceEEEEecCCC----ceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc---eE
Confidence            22345788887764    5555544322      13345899999999987643      456799999999987   56


Q ss_pred             ECcCCCc-----------CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971          552 RLTEGPW-----------SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       552 ~l~~~~~-----------~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                      .++.+..           .+..++|||||++|+|.+...    +..+||++++..+
T Consensus       334 ~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~----g~~~l~~~~l~~~  385 (388)
T 3pe7_A          334 RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH----GKPALYLATLPES  385 (388)
T ss_dssp             EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT----SSCEEEEEECCGG
T ss_pred             EeccccCcccccccccccCCCCccCCCCCCEEEEEecCC----CceeEEEEECChh
Confidence            6665543           457899999999999999764    6678999998764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.93  E-value=5.8e-23  Score=232.63  Aligned_cols=451  Identities=10%  Similarity=0.053  Sum_probs=289.8

Q ss_pred             ceeeeccceee-eccccCCC--CCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeecCCceeEEeeee------cC
Q 004971           59 NEIKITDGESV-NFNGHFPS--PSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVY------YD  129 (721)
Q Consensus        59 ~~~~l~~~~~~-~~~~~~sp--dG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~------~g  129 (721)
                      ....+..|... +...+|||  ||+                           +|+ ++..+|.+.||.+...      ..
T Consensus        55 ~~~~~~~h~~~~v~~~~~sp~~~~~---------------------------~l~-s~~~dg~v~vw~~~~~~~~~~~~~  106 (615)
T 1pgu_A           55 PVVQFTGHGSSVVTTVKFSPIKGSQ---------------------------YLC-SGDESGKVIVWGWTFDKESNSVEV  106 (615)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCC---------------------------EEE-EEETTSEEEEEEEEEEGGGTEEEE
T ss_pred             cceEEecCCCceEEEEEECcCCCCC---------------------------EEE-EecCCCEEEEEeCCCCcccccccc
Confidence            45677888888 99999999  997                           665 4557888889987522      11


Q ss_pred             cccccccchhhh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcce
Q 004971          130 TRRNTRSRTALE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT  208 (721)
Q Consensus       130 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~  208 (721)
                      .    ..+ .+. +..     .+  ..+       .|     +|  ||++|+........      ...++.++ .+...
T Consensus       107 ~----~~~-~~~~~~~-----~v--~~~-------~~-----s~--~~~~l~~~~~~~~~------~~~v~~~d-~~~~~  153 (615)
T 1pgu_A          107 N----VKS-EFQVLAG-----PI--SDI-------SW-----DF--EGRRLCVVGEGRDN------FGVFISWD-SGNSL  153 (615)
T ss_dssp             E----EEE-EEECCSS-----CE--EEE-------EE-----CT--TSSEEEEEECCSSC------SEEEEETT-TCCEE
T ss_pred             c----ccc-hhhcccc-----cE--EEE-------EE-----eC--CCCEEEEeccCCCC------ccEEEEEE-CCCcc
Confidence            1    100 022 111     11  111       57     99  99999988765321      13777777 34455


Q ss_pred             EeecCCCCCccccccCCCCC-EEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEe-ccC---C--cceeccC-CeE
Q 004971          209 RRLTPYGVADFSPAVSPSGK-YTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIV-ENG---G--WPCWVDE-STL  280 (721)
Q Consensus       209 ~~lt~~~~~~~~p~~SPDG~-~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~-~~~---~--~~~ws~d-g~l  280 (721)
                      ..+..+.......+|+|+|+ .++.+..+            ..|.+|++.+++...... +..   .  ...|+|| +++
T Consensus       154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------------~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  221 (615)
T 1pgu_A          154 GEVSGHSQRINACHLKQSRPMRSMTVGDD------------GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF  221 (615)
T ss_dssp             EECCSCSSCEEEEEECSSSSCEEEEEETT------------TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCE
T ss_pred             eeeecCCccEEEEEECCCCCcEEEEEeCC------------CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCE
Confidence            66666776677779999998 56665433            468899988877655443 222   2  3489999 887


Q ss_pred             EEEeccCCCCcEEEEEEecCCCcceeccccceEEe-C---CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCC
Q 004971          281 FFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRV-T---PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVK  356 (721)
Q Consensus       281 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~t  356 (721)
                      +++  ...++.+.+|.+....         ....+ .   .+...+..+.|+  ++++|+...     .+..|.+||+.+
T Consensus       222 l~~--~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~-----~d~~i~~wd~~~  283 (615)
T 1pgu_A          222 VIT--VGSDRKISCFDGKSGE---------FLKYIEDDQEPVQGGIFALSWL--DSQKFATVG-----ADATIRVWDVTT  283 (615)
T ss_dssp             EEE--EETTCCEEEEETTTCC---------EEEECCBTTBCCCSCEEEEEES--SSSEEEEEE-----TTSEEEEEETTT
T ss_pred             EEE--EeCCCeEEEEECCCCC---------EeEEecccccccCCceEEEEEc--CCCEEEEEc-----CCCcEEEEECCC
Confidence            663  3337888898543221         33333 2   555567778887  777777754     335699999998


Q ss_pred             CceEEeecccC--CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccC---------CCCc------------
Q 004971          357 NKFIELTRFVS--PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS---------PLPD------------  413 (721)
Q Consensus       357 g~~~~l~~~~~--~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~------------  413 (721)
                      ++.........  .........|+ +++.++....++..         .++++..         ....            
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i---------~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~  353 (615)
T 1pgu_A          284 SKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTL---------NFYELGHDEVLKTISGHNKGITALTVNPLISG  353 (615)
T ss_dssp             TEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCE---------EEEETTEEEEEEEECCCSSCEEEEETTTTEEE
T ss_pred             CcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCE---------EEEECCCCcEEEEEeCCCCCEEEEEecCcEEE
Confidence            87543322110  01233445564 78888776554432         2222111         0000            


Q ss_pred             -----------------------------------------ceeccc-------CCCCceeCcCCCEEEEEeCCcEEEEE
Q 004971          414 -----------------------------------------ISLFRF-------DGSFPSFSPKGDRIAFVEFPGVYVVN  445 (721)
Q Consensus       414 -----------------------------------------~~~~~~-------~~~~~~~SpDG~~la~~~~~~l~v~d  445 (721)
                                                               +.....       ....++++|||+.++......+.+|+
T Consensus       354 ~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  433 (615)
T 1pgu_A          354 SYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQ  433 (615)
T ss_dssp             ETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEE
T ss_pred             CCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEe
Confidence                                                     000000       01123556666555555566677777


Q ss_pred             CCCCceEEE-e-ecCceeeEEcCCCCeEEEEecCCCCCCC-CCcEEEEEEEccCCCCccce-EEcccCCCCCcceEEccC
Q 004971          446 SDGSNRRQV-Y-FKNAFSTVWDPVREAVVYTSGGPEFASE-SSEVDIISINVDDVDGVSAV-RRLTTNGKNNAFPSVSPD  521 (721)
Q Consensus       446 ~~~g~~~~l-~-~~~~~~~~~spdg~~la~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~SpD  521 (721)
                      +..++.... . ...+..++|+  ++.|+...       . ++.+.+|++....     .. ..+..+...+..++|+||
T Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~-------~~d~~i~~~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~  499 (615)
T 1pgu_A          434 SFTGDIIKSVRLNSPGSAVSLS--QNYVAVGL-------EEGNTIQVFKLSDLE-----VSFDLKTPLRAKPSYISISPS  499 (615)
T ss_dssp             TTTCCEEEEEECSSCEEEEEEC--SSEEEEEE-------TTTSCEEEEETTEEE-----EEEECSSCCSSCEEEEEECTT
T ss_pred             ccCCceeeecccCCCceEEEEc--CCEEEEee-------cCCCeEEEEECCCcc-----ccccccCCccCceEEEEECCC
Confidence            765554332 2 4566778888  77888775       4 6788888875421     11 344455567888999999


Q ss_pred             CCEEEEEEeeCCceeEEEEECCCCcccceEECcC-CCcCceeeEEcc----------CCCEEEEEEccCCCCCCceeEEE
Q 004971          522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-GPWSDTMCNWSP----------DGEWIAFASDRDNPGSGSFEMYL  590 (721)
Q Consensus       522 g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~~~~~~~~~~Sp----------DG~~l~~~~~~~~~~~~~~~i~~  590 (721)
                      |++|+..+.   +..|++||+.+++.  +..+.. +...+..++|+|          ||+.|+.++.++       .|++
T Consensus       500 g~~l~~~~~---dg~i~iw~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg-------~i~i  567 (615)
T 1pgu_A          500 ETYIAAGDV---MGKILLYDLQSREV--KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT-------NIFI  567 (615)
T ss_dssp             SSEEEEEET---TSCEEEEETTTTEE--EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS-------CEEE
T ss_pred             CCEEEEcCC---CCeEEEeeCCCCcc--eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCC-------cEEE
Confidence            999999887   78899999998875  555554 667788999999          999999998875       8999


Q ss_pred             EecCCC-ceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971          591 IHPNGT-GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       591 ~d~~~~-~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                      ||+.++ +...... ++...+..++|+|||+ |+..+.++                 .|++|+++.
T Consensus       568 w~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~-l~s~~~d~-----------------~v~iw~~~~  614 (615)
T 1pgu_A          568 YSVKRPMKIIKALN-AHKDGVNNLLWETPST-LVSSGADA-----------------CIKRWNVVL  614 (615)
T ss_dssp             EESSCTTCCEEETT-SSTTCEEEEEEEETTE-EEEEETTS-----------------CEEEEEEC-
T ss_pred             EECCCCceechhhh-cCccceEEEEEcCCCC-eEEecCCc-----------------eEEEEeeec
Confidence            999887 4444333 3677889999999999 87766655                 388888764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=3.7e-24  Score=229.85  Aligned_cols=260  Identities=22%  Similarity=0.351  Sum_probs=200.4

Q ss_pred             CCCEEEEEEecCCC-CeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccC
Q 004971          331 NNKFIAVATRRPTS-SYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS  409 (721)
Q Consensus       331 dG~~la~~~~~~g~-~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  409 (721)
                      .+.+++|.....+. ....|++||++++..+.+..   +...+..++|||||++|++.+.++..      ..++++++.+
T Consensus       142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~---~~~~v~~~~~Spdg~~la~~s~~~~~------~~i~~~d~~t  212 (415)
T 2hqs_A          142 FRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHR---SPQPLMSPAWSPDGSKLAYVTFESGR------SALVIQTLAN  212 (415)
T ss_dssp             TTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEE---ESSCEEEEEECTTSSEEEEEECTTSS------CEEEEEETTT
T ss_pred             CCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeC---CCCcceeeEEcCCCCEEEEEEecCCC------cEEEEEECCC
Confidence            37889988765321 12679999998766555543   35567889999999999998865431      4688888876


Q ss_pred             CCC-cceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCC
Q 004971          410 PLP-DISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFAS  482 (721)
Q Consensus       410 ~~~-~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~  482 (721)
                      +.. .+.........++|||||++|++..    ...|++||+.+++...+.  ...+..+.|||||++|++.+.      
T Consensus       213 g~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~------  286 (415)
T 2hqs_A          213 GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD------  286 (415)
T ss_dssp             CCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEEC------
T ss_pred             CcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEEC------
Confidence            532 2222223345689999999999873    456999999999887776  446778999999999999973      


Q ss_pred             CCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCcee
Q 004971          483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM  562 (721)
Q Consensus       483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~  562 (721)
                      .++...||.++..++    ....++.+......++|||||++|++.+..++...|++||+.+++   ...+..+. .+..
T Consensus       287 ~~g~~~i~~~d~~~~----~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~---~~~l~~~~-~~~~  358 (415)
T 2hqs_A          287 QAGRPQVYKVNINGG----APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---VQVLSSTF-LDET  358 (415)
T ss_dssp             TTSSCEEEEEETTSS----CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC---EEECCCSS-SCEE
T ss_pred             CCCCcEEEEEECCCC----CEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC---EEEecCCC-CcCC
Confidence            346678888888765    566776666566789999999999999876667899999999988   56676654 6688


Q ss_pred             eEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCC
Q 004971          563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG  619 (721)
Q Consensus       563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG  619 (721)
                      ++|+|||+.|++++.+.    +...||+||++++..++++.  +.+.+..++|||--
T Consensus       359 ~~~spdg~~l~~~s~~~----~~~~l~~~d~~g~~~~~l~~--~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          359 PSLAPNGTMVIYSSSQG----MGSVLNLVSTDGRFKARLPA--TDGQVKFPAWSPYL  409 (415)
T ss_dssp             EEECTTSSEEEEEEEET----TEEEEEEEETTSCCEEECCC--SSSEEEEEEECCCC
T ss_pred             eEEcCCCCEEEEEEcCC----CccEEEEEECCCCcEEEeeC--CCCCCcCCcccccc
Confidence            99999999999999874    56689999999888777754  56788999999964

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=5.7e-24  Score=246.86  Aligned_cols=316  Identities=15%  Similarity=0.204  Sum_probs=221.6

Q ss_pred             cccCceeecCCCCEEEEEEe-cCCCCeeeEEEEECCCCceEEeecccCCC----------------------CcccCcEE
Q 004971          321 HAFTPATSPGNNKFIAVATR-RPTSSYRHIELFDLVKNKFIELTRFVSPK----------------------THHLNPFI  377 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~-~~g~~~~~l~l~dl~tg~~~~l~~~~~~~----------------------~~~~~~~~  377 (721)
                      .+..++||| ||++|++... ..+.....|++||+++++.+.+.......                      ..+..++|
T Consensus        38 ~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (741)
T 2ecf_A           38 TLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW  116 (741)
T ss_dssp             CCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred             CCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence            456889999 9999999875 32223457999999999876665432222                      23678999


Q ss_pred             cCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC---C-CcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEE
Q 004971          378 SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP---L-PDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQ  453 (721)
Q Consensus       378 Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~---~-~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~  453 (721)
                      ||||++|++...          ..++++++.++   . ..+.........++|||||++|++.....|++||+.+++.++
T Consensus       117 SpDg~~l~~~~~----------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          117 SPDAQRLLFPLG----------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             CTTSSEEEEEET----------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEE
T ss_pred             CCCCCEEEEEeC----------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEE
Confidence            999999999764          24788887665   2 233333333456899999999999988899999999998877


Q ss_pred             Eee-cC------------------ceeeEEcCCCCeEEEEecCCC-C-----------------------CCCCCcEEEE
Q 004971          454 VYF-KN------------------AFSTVWDPVREAVVYTSGGPE-F-----------------------ASESSEVDII  490 (721)
Q Consensus       454 l~~-~~------------------~~~~~~spdg~~la~~~~~~~-~-----------------------~~~~~~~~i~  490 (721)
                      +.. +.                  +..+.|||||++|++.+.... .                       ........||
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            762 11                  367999999999999864210 0                       0112445778


Q ss_pred             EEEccC-CCCccceEEccc---CCCCCcceEEccCCCEEEEEEeeC--CceeEEEEECCCCcccceEECcCC-C--c--C
Q 004971          491 SINVDD-VDGVSAVRRLTT---NGKNNAFPSVSPDGKWIVFRSTRT--GYKNLYIMDAEGGEGYGLHRLTEG-P--W--S  559 (721)
Q Consensus       491 ~~~~~~-~~~~~~~~~l~~---~~~~~~~~~~SpDg~~l~~~s~~~--g~~~l~~~d~~~g~~~~~~~l~~~-~--~--~  559 (721)
                      .++..+ +    ....+..   +......++| |||++|++.....  ....|++||+.+++.   ..+... .  +  .
T Consensus       267 ~~d~~~~~----~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~---~~~~~~~~~~~~~~  338 (741)
T 2ecf_A          267 VISPAEQA----QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ---RVLAHETSPTWVPL  338 (741)
T ss_dssp             EECSSTTC----CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE---EEEEEEECSSCCCC
T ss_pred             EEECCCCC----ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce---EEEEEcCCCCcCCc
Confidence            777765 4    4444442   2345667899 9999999987532  356899999999884   333321 1  1  2


Q ss_pred             ceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCe-EECCCCCEEEEEEecCCCcCCCCCC
Q 004971          560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHP-YFSPDGKSIVFTSDYGGISAEPIST  638 (721)
Q Consensus       560 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~-~~SpDG~~l~~~~~~~~~~~~~~~~  638 (721)
                      +..++|||||+ +++.....    +...||.++++++ .+.++.  +...+..+ .|||||++|++.+...+..      
T Consensus       339 ~~~~~~spdg~-~~~~~~~~----g~~~l~~~~~~~~-~~~l~~--~~~~v~~~~~~s~dg~~l~~~~~~~~~~------  404 (741)
T 2ecf_A          339 HNSLRFLDDGS-ILWSSERT----GFQHLYRIDSKGK-AAALTH--GNWSVDELLAVDEKAGLAYFRAGIESAR------  404 (741)
T ss_dssp             CSCCEECTTSC-EEEEECTT----SSCEEEEECSSSC-EEESCC--SSSCEEEEEEEETTTTEEEEEECSSCTT------
T ss_pred             CCceEECCCCe-EEEEecCC----CccEEEEEcCCCC-eeeeee--cceEEEeEeEEeCCCCEEEEEEeCCCCc------
Confidence            35799999999 55555442    5578999998776 666653  33445555 5999999999888765311      


Q ss_pred             CCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971          639 PHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       639 ~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~  676 (721)
                            ..+||.++++++..++|+. ......++|||+
T Consensus       405 ------~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spd  435 (741)
T 2ecf_A          405 ------ESQIYAVPLQGGQPQRLSK-APGMHSASFARN  435 (741)
T ss_dssp             ------CBEEEEEETTCCCCEECCC-SCSEEEEEECTT
T ss_pred             ------eEEEEEEEcCCCCeeeccc-CCCceEEEECCC
Confidence                  1258888888888889987 444567899996

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=8.9e-24  Score=244.51  Aligned_cols=326  Identities=13%  Similarity=0.133  Sum_probs=212.8

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCC---cccCceeecCCCCEEEEEEecCCC---
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGL---HAFTPATSPGNNKFIAVATRRPTS---  344 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~sp~dG~~la~~~~~~g~---  344 (721)
                      .++|+|||++++.   ..++.+.+|.+.  .+.       ....+..+..   .+..++||| ||++|++.......   
T Consensus        21 ~~~~spdg~~~~~---~~dg~i~~~d~~--~g~-------~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~   87 (723)
T 1xfd_A           21 EAKWISDTEFIYR---EQKGTVRLWNVE--TNT-------STVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQH   87 (723)
T ss_dssp             CCCBSSSSCBCCC---CSSSCEEEBCGG--GCC-------CEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSS
T ss_pred             ccEEcCCCcEEEE---eCCCCEEEEECC--CCc-------EEEEeccccccccccceEEECC-CCCEEEEEecCccceee
Confidence            5689999996652   346766666332  221       2333333332   367899999 99999998654322   


Q ss_pred             -CeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceecccC--
Q 004971          345 -SYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRFD--  420 (721)
Q Consensus       345 -~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~--  420 (721)
                       ....|++||+++++.+.+.....+...+..++|||||++|+|.+.          ..++++++.++.. .++.....  
T Consensus        88 ~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~----------~~i~~~~~~~g~~~~~~~~~~~~~  157 (723)
T 1xfd_A           88 SYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE----------NNIYYCAHVGKQAIRVVSTGKEGV  157 (723)
T ss_dssp             CCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET----------TEEEEESSSSSCCEEEECCCBTTT
T ss_pred             cceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC----------CeEEEEECCCCceEEEecCCCCCc
Confidence             236799999999987666544333334677999999999999764          2477877765532 22211111  


Q ss_pred             -----------------CCCceeCcCCCEEEEEe-C----------------------------------CcEEEEECCC
Q 004971          421 -----------------GSFPSFSPKGDRIAFVE-F----------------------------------PGVYVVNSDG  448 (721)
Q Consensus       421 -----------------~~~~~~SpDG~~la~~~-~----------------------------------~~l~v~d~~~  448 (721)
                                       ...++|||||++|++.. +                                  ..|++||+.+
T Consensus       158 ~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~  237 (723)
T 1xfd_A          158 IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG  237 (723)
T ss_dssp             EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS
T ss_pred             eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC
Confidence                             13589999999999984 1                                  1799999998


Q ss_pred             Cce-EEEee--------cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc-c-CCCCC----
Q 004971          449 SNR-RQVYF--------KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT-T-NGKNN----  513 (721)
Q Consensus       449 g~~-~~l~~--------~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~-~-~~~~~----  513 (721)
                      ++. ..+..        ..+..+.|||||+.|++....     ......|+.++..++    ....+. . +....    
T Consensus       238 ~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~-----~~~~~~i~~~d~~~g----~~~~~~~~~~~~~~~~~~  308 (723)
T 1xfd_A          238 PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR-----AQNVSILTLCDATTG----VCTKKHEDESEAWLHRQN  308 (723)
T ss_dssp             SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET-----TSCEEEEEEEETTTC----CEEEEEEEECSSCCCCCC
T ss_pred             CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcC-----CCCeEEEEEEeCCCC----cceEEEEeccCCEEeccC
Confidence            874 55542        245679999999988776532     234566777777654    433332 2 22222    


Q ss_pred             cceEEccCCCEEEEE-EeeCC----ceeEEEEE-CCCCcccceEECcCCCcCcee-eEEccCCCEEEEEEccCCCCCCce
Q 004971          514 AFPSVSPDGKWIVFR-STRTG----YKNLYIMD-AEGGEGYGLHRLTEGPWSDTM-CNWSPDGEWIAFASDRDNPGSGSF  586 (721)
Q Consensus       514 ~~~~~SpDg~~l~~~-s~~~g----~~~l~~~d-~~~g~~~~~~~l~~~~~~~~~-~~~SpDG~~l~~~~~~~~~~~~~~  586 (721)
                      ..++|||||++|++. +.+++    ..+||+|| ..+++......++.+...+.. ++|||||+.|++...+..  .+..
T Consensus       309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~  386 (723)
T 1xfd_A          309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDL--PRRR  386 (723)
T ss_dssp             CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSC--TTCC
T ss_pred             CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCC--Ccce
Confidence            478999999999997 55555    55899999 555541113455554444343 699999999999887631  1345


Q ss_pred             eEEEEecCCC-ceEEeeec-CCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          587 EMYLIHPNGT-GLRKLIQS-GSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       587 ~i~~~d~~~~-~~~~l~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      .||.++..++ +.+.++.. .+...+..++|||||++|++.....+
T Consensus       387 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  432 (723)
T 1xfd_A          387 QLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPG  432 (723)
T ss_dssp             EEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSS
T ss_pred             EEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCC
Confidence            6777777665 34444321 02345678999999999998766544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.92  E-value=9.3e-24  Score=244.38  Aligned_cols=327  Identities=11%  Similarity=0.071  Sum_probs=218.9

Q ss_pred             ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCC-Ccc--cCcEEcCCCCEEEEEEeeCCCCCCCC
Q 004971          322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPK-THH--LNPFISPDSSRVGYHKCRGGSTREDG  398 (721)
Q Consensus       322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~-~~~--~~~~~Spdg~~l~~~~~~~~~~~~~~  398 (721)
                      ...+.|+| ||++++..       +..|++||+.+++...+....... ...  ..+.|||||++|++............
T Consensus        19 ~~~~~w~~-dg~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~   90 (740)
T 4a5s_A           19 LYSLRWIS-DHEYLYKQ-------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY   90 (740)
T ss_dssp             CCCEEECS-SSEEEEEE-------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred             ccccEECC-CCcEEEEc-------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence            45889999 99766652       235999999999876664322111 112  22789999999999887654332233


Q ss_pred             cceeEEEeccCCC-CcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-ecC------------------
Q 004971          399 NNQLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-FKN------------------  458 (721)
Q Consensus       399 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-~~~------------------  458 (721)
                      ...++++++.++. ..+.........++|||||++|||+.+..|+++++.+++.++++ .+.                  
T Consensus        91 ~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           91 TASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             ceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence            3567889987762 23332233345689999999999999999999999999988886 221                  


Q ss_pred             --ceeeEEcCCCCeEEEEecCCC-C--------------------------CCCCCcEEEEEEEccC---CCCccceEEc
Q 004971          459 --AFSTVWDPVREAVVYTSGGPE-F--------------------------ASESSEVDIISINVDD---VDGVSAVRRL  506 (721)
Q Consensus       459 --~~~~~~spdg~~la~~~~~~~-~--------------------------~~~~~~~~i~~~~~~~---~~~~~~~~~l  506 (721)
                        ...+.|||||++|+|.+.... .                          ......+.|+.++.++   +. ......+
T Consensus       171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~-~~~~~~l  249 (740)
T 4a5s_A          171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT-NATSIQI  249 (740)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS-CCCEEEE
T ss_pred             CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC-cceEEEe
Confidence              124889999999999863211 0                          0112344666666654   20 0023344


Q ss_pred             cc------CCCCCcceEEccCCCEEEEEEeeCC-ceeEEEEECCCCc----ccceEEC--cCCCcC-----ceeeEEccC
Q 004971          507 TT------NGKNNAFPSVSPDGKWIVFRSTRTG-YKNLYIMDAEGGE----GYGLHRL--TEGPWS-----DTMCNWSPD  568 (721)
Q Consensus       507 ~~------~~~~~~~~~~SpDg~~l~~~s~~~g-~~~l~~~d~~~g~----~~~~~~l--~~~~~~-----~~~~~~SpD  568 (721)
                      ..      +...+..++|||||+.+++..++.. ...|+++|+++|+    ...+..+  ..+...     ...++||||
T Consensus       250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD  329 (740)
T 4a5s_A          250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD  329 (740)
T ss_dssp             CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred             cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence            43      3345667899999998888877653 4589999999887    2212222  111111     247999999


Q ss_pred             CCEEE-EEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEec--CCCcCCCCCCCCCCCCC
Q 004971          569 GEWIA-FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY--GGISAEPISTPHQYQPY  645 (721)
Q Consensus       569 G~~l~-~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~--~~~~~~~~~~~~~~~~~  645 (721)
                      |++|+ +.+.+    ++..+||+||+++++.++++..  ...+..+ +++||+.|+|.+..  ...            ..
T Consensus       330 G~~l~~~~s~~----~G~~~l~~~~~~~~~~~~lT~g--~~~v~~~-~~~d~~~i~f~~~~~~~~~------------~~  390 (740)
T 4a5s_A          330 GNSFYKIISNE----EGYRHICYFQIDKKDCTFITKG--TWEVIGI-EALTSDYLYYISNEYKGMP------------GG  390 (740)
T ss_dssp             SSEEEEEEECT----TSCEEEEEEETTCSSCEESCCS--SSCEEEE-EEECSSEEEEEESCGGGCT------------TC
T ss_pred             CCEEEEEEEcC----CCceEEEEEECCCCceEecccC--CEEEEEE-EEEeCCEEEEEEecCCCCC------------ce
Confidence            99998 66655    3778999999999999988752  2233333 44679999999876  211            02


Q ss_pred             ccEEEEEcCCCCeE-EeccC----CCCCCCceecCC
Q 004971          646 GEIFKIKLDGSDLK-RLTQN----SFEDGTPAWGPR  676 (721)
Q Consensus       646 ~~l~~~d~~~~~~~-~lt~~----~~~~~~~~~sp~  676 (721)
                      .+||.+++++++.+ +||..    ......+.|||+
T Consensus       391 ~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~d  426 (740)
T 4a5s_A          391 RNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKE  426 (740)
T ss_dssp             BEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTT
T ss_pred             eEEEEEECCCCCcceeeccccCCCCCceEEEEECCC
Confidence            47999999988765 78843    234567899996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.92  E-value=1.8e-22  Score=228.60  Aligned_cols=416  Identities=13%  Similarity=0.034  Sum_probs=270.4

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCc-----ceEeecCCCCC-ccccccCC--CCCEEEEEecCCCCCCc
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTG-----LTRRLTPYGVA-DFSPAVSP--SGKYTAVASYGNKGWDG  242 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g-----~~~~lt~~~~~-~~~p~~SP--DG~~la~~~~~~~~w~~  242 (721)
                      +|  ||++|++..+.           .+..++++++     ....+..+... ....+|||  ||++|+++..+      
T Consensus        27 sp--dg~~l~~~~~~-----------~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~d------   87 (615)
T 1pgu_A           27 DP--TTNAIAYPCGK-----------SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES------   87 (615)
T ss_dssp             ET--TTTEEEEEETT-----------EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETT------
T ss_pred             CC--CCCEEEEecCC-----------eEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCC------
Confidence            99  99999998732           4555555555     55667677776 67779999  99999997643      


Q ss_pred             ccceeeeeEEEEEcCCC------ceeEEE--e-ccCC--cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccc
Q 004971          243 EVEMLSTDIYIFLTRDG------TQRVKI--V-ENGG--WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVS  311 (721)
Q Consensus       243 ~~~~~~~~i~~~d~~~g------~~~~l~--~-~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~  311 (721)
                            ..|.+|++.++      +...+.  . ....  ...|+||++.++....+.+....++ +.... .       .
T Consensus        88 ------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~-~~d~~-~-------~  152 (615)
T 1pgu_A           88 ------GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFI-SWDSG-N-------S  152 (615)
T ss_dssp             ------SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEE-ETTTC-C-------E
T ss_pred             ------CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEE-EEECC-C-------c
Confidence                  46788888655      222222  2 2222  4589999986654333323334444 22222 1       4


Q ss_pred             eEEeCCCCCcccCceeecCCCC-EEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCC---cccCcEEcCC-CCEEEE
Q 004971          312 IQRVTPPGLHAFTPATSPGNNK-FIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKT---HHLNPFISPD-SSRVGY  386 (721)
Q Consensus       312 ~~~~~~~~~~~~~~~~sp~dG~-~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~---~~~~~~~Spd-g~~l~~  386 (721)
                      ...+..+...+..++|+| +++ .++...     .+..|.+||+.+++...  ....+..   .+..++|+|+ ++.|+.
T Consensus       153 ~~~~~~~~~~v~~~~~~~-~~~~~l~~~~-----~d~~v~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~  224 (615)
T 1pgu_A          153 LGEVSGHSQRINACHLKQ-SRPMRSMTVG-----DDGSVVFYQGPPFKFSA--SDRTHHKQGSFVRDVEFSPDSGEFVIT  224 (615)
T ss_dssp             EEECCSCSSCEEEEEECS-SSSCEEEEEE-----TTTEEEEEETTTBEEEE--EECSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred             ceeeecCCccEEEEEECC-CCCcEEEEEe-----CCCcEEEEeCCCcceee--eecccCCCCceEEEEEECCCCCCEEEE
Confidence            455566666788899999 998 455432     34569999999887433  3344555   6788999999 999888


Q ss_pred             EEeeCCCCCCCCcceeEEEeccCCCCcce------ecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--e-
Q 004971          387 HKCRGGSTREDGNNQLLLENIKSPLPDIS------LFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--F-  456 (721)
Q Consensus       387 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~-  456 (721)
                      ...++.         +.++++..+.....      ........+.|+ +++.|+..+ ++.|.+||+.+++.....  . 
T Consensus       225 ~~~dg~---------i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  294 (615)
T 1pgu_A          225 VGSDRK---------ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK  294 (615)
T ss_dssp             EETTCC---------EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred             EeCCCe---------EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC
Confidence            765544         56666655422111      112223457899 999998885 678999999987754433  2 


Q ss_pred             ----cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC----------------------
Q 004971          457 ----KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG----------------------  510 (721)
Q Consensus       457 ----~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~----------------------  510 (721)
                          ..+..+.|+ +++.++..+       .++.+.+|++....     ....+..+.                      
T Consensus       295 ~~~~~~~~~~~~~-~~~~l~~~~-------~~g~i~~~d~~~~~-----~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~  361 (615)
T 1pgu_A          295 QQLGNQQVGVVAT-GNGRIISLS-------LDGTLNFYELGHDE-----VLKTISGHNKGITALTVNPLISGSYDGRIME  361 (615)
T ss_dssp             TCGGGCEEEEEEE-ETTEEEEEE-------TTSCEEEEETTEEE-----EEEEECCCSSCEEEEETTTTEEEETTSCEEE
T ss_pred             CcccCceeEEEeC-CCCeEEEEE-------CCCCEEEEECCCCc-----EEEEEeCCCCCEEEEEecCcEEECCCCeEEE
Confidence                344566775 888888876       35666666543210     111111100                      


Q ss_pred             -----------CC----------------------------------CcceEEccCCCEEEE------------------
Q 004971          511 -----------KN----------------------------------NAFPSVSPDGKWIVF------------------  527 (721)
Q Consensus       511 -----------~~----------------------------------~~~~~~SpDg~~l~~------------------  527 (721)
                                 ..                                  ...++|+|||+.++.                  
T Consensus       362 w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (615)
T 1pgu_A          362 WSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK  441 (615)
T ss_dssp             TTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceee
Confidence                       01                                  112344455433332                  


Q ss_pred             --------------------EEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCcee
Q 004971          528 --------------------RSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFE  587 (721)
Q Consensus       528 --------------------~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~  587 (721)
                                          .+.  .+..|++||+.+++... ..+..+...+..++|+|||++|+.+..++       .
T Consensus       442 ~~~~~~~~~~~~~~~~~l~~~~~--~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-------~  511 (615)
T 1pgu_A          442 SVRLNSPGSAVSLSQNYVAVGLE--EGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVMG-------K  511 (615)
T ss_dssp             EEECSSCEEEEEECSSEEEEEET--TTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTS-------C
T ss_pred             ecccCCCceEEEEcCCEEEEeec--CCCeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCCC-------e
Confidence                                211  04567888887665211 44555666788999999999999998875       8


Q ss_pred             EEEEecCCCceEEeeecCCCCCcCCeEECC----------CCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC-
Q 004971          588 MYLIHPNGTGLRKLIQSGSAGRANHPYFSP----------DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS-  656 (721)
Q Consensus       588 i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp----------DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-  656 (721)
                      |++||+.+++........+...+..++|+|          ||++|+..+.++                 .|++||++++ 
T Consensus       512 i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg-----------------~i~iw~~~~~~  574 (615)
T 1pgu_A          512 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT-----------------NIFIYSVKRPM  574 (615)
T ss_dssp             EEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS-----------------CEEEEESSCTT
T ss_pred             EEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCC-----------------cEEEEECCCCc
Confidence            999999988766543322667788999999          999999887765                 3999999886 


Q ss_pred             -CeEEeccCCCCCCCceecCCcC
Q 004971          657 -DLKRLTQNSFEDGTPAWGPRFI  678 (721)
Q Consensus       657 -~~~~lt~~~~~~~~~~~sp~~l  678 (721)
                       ....+..|...+...+|+|+.-
T Consensus       575 ~~~~~~~~h~~~v~~l~~s~~~~  597 (615)
T 1pgu_A          575 KIIKALNAHKDGVNNLLWETPST  597 (615)
T ss_dssp             CCEEETTSSTTCEEEEEEEETTE
T ss_pred             eechhhhcCccceEEEEEcCCCC
Confidence             3556777777888899999743

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=7.7e-24  Score=245.02  Aligned_cols=326  Identities=13%  Similarity=0.129  Sum_probs=216.6

Q ss_pred             ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCC---cccCcEEcCCCCEEEEEEeeCCCCCCCC
Q 004971          322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKT---HHLNPFISPDSSRVGYHKCRGGSTREDG  398 (721)
Q Consensus       322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~---~~~~~~~Spdg~~l~~~~~~~~~~~~~~  398 (721)
                      ...++||| ||++++.  .    .+..|++||+++++...+...  +..   .+..++|||||++|++...+........
T Consensus        19 ~~~~~~sp-dg~~~~~--~----~dg~i~~~d~~~g~~~~~~~~--~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~   89 (723)
T 1xfd_A           19 DPEAKWIS-DTEFIYR--E----QKGTVRLWNVETNTSTVLIEG--KKIESLRAIRYEISPDREYALFSYNVEPIYQHSY   89 (723)
T ss_dssp             CCCCCBSS-SSCBCCC--C----SSSCEEEBCGGGCCCEEEECT--TTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCC
T ss_pred             ccccEEcC-CCcEEEE--e----CCCCEEEEECCCCcEEEEecc--ccccccccceEEECCCCCEEEEEecCccceeecc
Confidence            56789999 9995532  2    234699999999986655432  222   3677999999999999876554322222


Q ss_pred             cceeEEEeccCCCC-cceeccc---CCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEeec---Cc------------
Q 004971          399 NNQLLLENIKSPLP-DISLFRF---DGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFK---NA------------  459 (721)
Q Consensus       399 ~~~l~~~~~~~~~~-~~~~~~~---~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~~~---~~------------  459 (721)
                      ...++++++.++.. .+.....   ....++|||||++|+|.....|++|++.+++.+++...   .+            
T Consensus        90 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e  169 (723)
T 1xfd_A           90 TGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE  169 (723)
T ss_dssp             CSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred             eeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence            25688888876643 1222111   14568999999999999889999999999988877622   22            


Q ss_pred             ------eeeEEcCCCCeEEEEecCCCCC-------------------------CCCCcEEEEEEEccCCCCccceEEccc
Q 004971          460 ------FSTVWDPVREAVVYTSGGPEFA-------------------------SESSEVDIISINVDDVDGVSAVRRLTT  508 (721)
Q Consensus       460 ------~~~~~spdg~~la~~~~~~~~~-------------------------~~~~~~~i~~~~~~~~~~~~~~~~l~~  508 (721)
                            ..++|||||++|++.+......                         .......|+.++..+.   .....+..
T Consensus       170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~---~~~~~l~~  246 (723)
T 1xfd_A          170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP---THDLEMMP  246 (723)
T ss_dssp             TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS---CCCEECCC
T ss_pred             EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC---ceeEEeeC
Confidence                  5799999999999987421000                         0112346666666553   12355654


Q ss_pred             C------CCCCcceEEccCCCEEEEEEeeC-CceeEEEEECCCCcccceEECc-C-CCcCc----eeeEEccCCCEEEEE
Q 004971          509 N------GKNNAFPSVSPDGKWIVFRSTRT-GYKNLYIMDAEGGEGYGLHRLT-E-GPWSD----TMCNWSPDGEWIAFA  575 (721)
Q Consensus       509 ~------~~~~~~~~~SpDg~~l~~~s~~~-g~~~l~~~d~~~g~~~~~~~l~-~-~~~~~----~~~~~SpDG~~l~~~  575 (721)
                      +      ...+..++|||||++|++...+. ....|++||+.+++.   ..+. . ....+    ..++|||||++|++.
T Consensus       247 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~---~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          247 PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC---TKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE---EEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             CccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc---eEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence            3      23456689999999887776653 356899999999884   3332 1 11111    378999999999987


Q ss_pred             -EccCCCCCCceeEEEEe-cCCCc---eEEeeecCCCCCcC-CeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEE
Q 004971          576 -SDRDNPGSGSFEMYLIH-PNGTG---LRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF  649 (721)
Q Consensus       576 -~~~~~~~~~~~~i~~~d-~~~~~---~~~l~~~~~~~~~~-~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  649 (721)
                       ...........+||+|| ..+++   .+.++.  ....+. .++|||||++|++.+.+....            ..+||
T Consensus       324 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~------------~~~l~  389 (723)
T 1xfd_A          324 RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDEKGNKIYFLSTEDLPR------------RRQLY  389 (723)
T ss_dssp             EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEETTTTEEEEEESSSCTT------------CCEEE
T ss_pred             EecccCCCcceeEEEEEeccCCCCccceeEeec--CCeEEEeeeEEcCCCCEEEEEEcCCCCc------------ceEEE
Confidence             44320000156899999 56766   555653  122233 368999999999988764110            12588


Q ss_pred             EEEcCCC-CeEEecc---CCCCCCCceecCC
Q 004971          650 KIKLDGS-DLKRLTQ---NSFEDGTPAWGPR  676 (721)
Q Consensus       650 ~~d~~~~-~~~~lt~---~~~~~~~~~~sp~  676 (721)
                      .++++++ +.+.|+.   +......++|||+
T Consensus       390 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~spd  420 (723)
T 1xfd_A          390 SANTVGNFNRQCLSCDLVENCTYFSASFSHS  420 (723)
T ss_dssp             EECSSTTCCCBCSSTTSSSSCCCCEEEECTT
T ss_pred             EEeCCCCCCcceecccccCCCCeEEEEECCC
Confidence            8888775 5667775   3445677999996

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.92  E-value=4.5e-23  Score=219.96  Aligned_cols=311  Identities=18%  Similarity=0.236  Sum_probs=207.1

Q ss_pred             ceEEeCCCCCc-----ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEE
Q 004971          311 SIQRVTPPGLH-----AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVG  385 (721)
Q Consensus       311 ~~~~~~~~~~~-----~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~  385 (721)
                      ...+++.....     ...++||| ||++|+|.....+  ...|+++|+++++.+.+...  .......+.|||||++|+
T Consensus        22 ~~~~l~~~~~~~~~~~~~~~~~Sp-dG~~l~~~~~~~g--~~~l~~~d~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~   96 (396)
T 3c5m_A           22 KVTRLTPTDIICHRNYFYQKCFTQ-DGKKLLFAGDFDG--NRNYYLLNLETQQAVQLTEG--KGDNTFGGFISTDERAFF   96 (396)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCT-TSCEEEEEECTTS--SCEEEEEETTTTEEEECCCS--SCBCTTTCEECTTSSEEE
T ss_pred             ceEEEecCCCCccceeeecCcCCC-CCCEEEEEEecCC--CceEEEEECCCCcEEEeecC--CCCccccceECCCCCEEE
Confidence            34555544222     57889999 9999999876532  34699999999987666532  122233488999999999


Q ss_pred             EEEeeCCCCCCCCcceeEEEeccCCCCc-ceecccCC-CC-------------------ceeCcCCCEEEEE------eC
Q 004971          386 YHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDG-SF-------------------PSFSPKGDRIAFV------EF  438 (721)
Q Consensus       386 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~-~~-------------------~~~SpDG~~la~~------~~  438 (721)
                      |.....         .++++++.++... +....... ..                   +.|+|||+.+++.      ..
T Consensus        97 ~~~~~~---------~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~  167 (396)
T 3c5m_A           97 YVKNEL---------NLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPT  167 (396)
T ss_dssp             EEETTT---------EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCC
T ss_pred             EEEcCC---------cEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCc
Confidence            976543         3777777655321 11111000 00                   3567777766554      24


Q ss_pred             CcEEEEECCCCceEEEe--ecCceeeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC--CCC
Q 004971          439 PGVYVVNSDGSNRRQVY--FKNAFSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG--KNN  513 (721)
Q Consensus       439 ~~l~v~d~~~g~~~~l~--~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~--~~~  513 (721)
                      ..|+++|+.+++.+.+.  ...+..+.|+| ||++|++.+.+.   .......||.++.++.    ..+.+....  ...
T Consensus       168 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~---~~~~~~~l~~~d~~~~----~~~~l~~~~~~~~~  240 (396)
T 3c5m_A          168 CRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGP---HDLVDARMWLVNEDGS----NVRKIKEHAEGESC  240 (396)
T ss_dssp             EEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSC---SSSCSCCCEEEETTSC----CCEESSCCCTTEEE
T ss_pred             ceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCC---CCCCCceEEEEECCCC----ceeEeeccCCCccc
Confidence            57999999999887776  34567899999 899999987421   1111256777777654    556666532  235


Q ss_pred             cceEEccCCCEEEEEEeeCCcee--EEEEECCCCcccceEECcCCCcCceeeEEcc-CCCEEEEEEccCC---------C
Q 004971          514 AFPSVSPDGKWIVFRSTRTGYKN--LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP-DGEWIAFASDRDN---------P  581 (721)
Q Consensus       514 ~~~~~SpDg~~l~~~s~~~g~~~--l~~~d~~~g~~~~~~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~---------~  581 (721)
                      ..++|||||++|++.+...+...  |++||+.+++   ...+...... . +.|+| ||+.|++......         .
T Consensus       241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~---~~~l~~~~~~-~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~  315 (396)
T 3c5m_A          241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE---NEEVMVMPPC-S-HLMSNFDGSLMVGDGCDAPVDVADADSYN  315 (396)
T ss_dssp             EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC---EEEEEECCSE-E-EEEECSSSSEEEEEECCC----------C
T ss_pred             cceEECCCCCEEEEEecCCCCccceEEEEECCCCC---eEEeeeCCCC-C-CCccCCCCceEEEecCCcceeeccccccc
Confidence            56899999999999987665555  9999999887   4444432222 3 89999 9998887653200         0


Q ss_pred             CCCceeEEEEecCCCceEEeeecCCCC-----------CcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEE
Q 004971          582 GSGSFEMYLIHPNGTGLRKLIQSGSAG-----------RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK  650 (721)
Q Consensus       582 ~~~~~~i~~~d~~~~~~~~l~~~~~~~-----------~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  650 (721)
                      ..+...||+||+.+++.++++..  ..           ....+.|||||++|++.+.+.+.              .+||.
T Consensus       316 ~~~~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~--------------~~l~~  379 (396)
T 3c5m_A          316 IENDPFLYVLNTKAKSAQKLCKH--STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGV--------------PAIYI  379 (396)
T ss_dssp             CCCCCEEEEEETTTTBCCEEEEC--CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSS--------------CEEEE
T ss_pred             cCCCCcEEEEecccCceEEccCC--CCccccccccccCCCCCceEccCCCeEEEEecCCCC--------------ceEEE
Confidence            01345899999999887777653  22           25678999999999999876653              36999


Q ss_pred             EEcCCCCeEEecc
Q 004971          651 IKLDGSDLKRLTQ  663 (721)
Q Consensus       651 ~d~~~~~~~~lt~  663 (721)
                      +++++++.+.+..
T Consensus       380 ~~~~~~~~~~~~~  392 (396)
T 3c5m_A          380 ADVPESYKHLEHH  392 (396)
T ss_dssp             EECCTTCC-----
T ss_pred             EEEcccccccccc
Confidence            9999887765543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.91  E-value=2.8e-22  Score=235.18  Aligned_cols=450  Identities=12%  Similarity=0.063  Sum_probs=288.6

Q ss_pred             eeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeecCCceeEEeeeecCcccccccchh
Q 004971           60 EIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTA  139 (721)
Q Consensus        60 ~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~  139 (721)
                      .+.+..|...+...+|||||+                           +|+.. ..+|.+.||.+.  .+..   ..+  
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~---------------------------~la~~-~~~g~v~iwd~~--~~~~---~~~--   50 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEP---------------------------WVLTT-LYSGRVEIWNYE--TQVE---VRS--   50 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSS---------------------------EEEEE-ETTSEEEEEETT--TTEE---EEE--
T ss_pred             ceeeecCCCceEEEEECCCCC---------------------------EEEEE-eCCCEEEEEECC--CCce---EEE--
Confidence            466778888899999999998                           77655 467888888754  3431   122  


Q ss_pred             hh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcce-EeecCCCCC
Q 004971          140 LE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT-RRLTPYGVA  217 (721)
Q Consensus       140 l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~-~~lt~~~~~  217 (721)
                      +. +..   ...    .+       .|     +|  ||++|++.+..+          .|...+..+++. ..+..+...
T Consensus        51 ~~~~~~---~v~----~~-------~~-----s~--~~~~l~~~~~dg----------~i~vw~~~~~~~~~~~~~~~~~   99 (814)
T 3mkq_A           51 IQVTET---PVR----AG-------KF-----IA--RKNWIIVGSDDF----------RIRVFNYNTGEKVVDFEAHPDY   99 (814)
T ss_dssp             EECCSS---CEE----EE-------EE-----EG--GGTEEEEEETTS----------EEEEEETTTCCEEEEEECCSSC
T ss_pred             EecCCC---cEE----EE-------EE-----eC--CCCEEEEEeCCC----------eEEEEECCCCcEEEEEecCCCC
Confidence            33 221   111    11       68     99  999999887653          566666666554 556667777


Q ss_pred             ccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCc-eeEEEe-ccCC--cceecc-CCeEEEEeccCCCCcE
Q 004971          218 DFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGT-QRVKIV-ENGG--WPCWVD-ESTLFFHRKSEEDDWI  292 (721)
Q Consensus       218 ~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~-~~~l~~-~~~~--~~~ws~-dg~l~~~~~~~~~g~~  292 (721)
                      ....+|+|||++|++++.+            ..|.+|++.++. ...... +...  ...|+| |+.++++  ...++.+
T Consensus       100 v~~~~~s~~~~~l~~~~~d------------g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~--~~~dg~v  165 (814)
T 3mkq_A          100 IRSIAVHPTKPYVLSGSDD------------LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS--GCLDRTV  165 (814)
T ss_dssp             EEEEEECSSSSEEEEEETT------------SEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE--EETTSEE
T ss_pred             EEEEEEeCCCCEEEEEcCC------------CEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE--EeCCCeE
Confidence            7777999999999987643            468889988763 333332 2222  458999 7776663  3337888


Q ss_pred             EEEEEecCCCcceeccccceEEe-CCCCCcccCceeecC-CCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCC
Q 004971          293 SVYKVILPQTGLVSTESVSIQRV-TPPGLHAFTPATSPG-NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKT  370 (721)
Q Consensus       293 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~sp~-dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~  370 (721)
                      .+|.+....         ....+ ..+...+..++|+|. ++.+|+...     .++.|.+||+.+++..  .....+..
T Consensus       166 ~vwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-----~dg~i~~~d~~~~~~~--~~~~~~~~  229 (814)
T 3mkq_A          166 KVWSLGQST---------PNFTLTTGQERGVNYVDYYPLPDKPYMITAS-----DDLTIKIWDYQTKSCV--ATLEGHMS  229 (814)
T ss_dssp             EEEETTCSS---------CSEEEECCCTTCCCEEEECCSTTCCEEEEEC-----TTSEEEEEETTTTEEE--EEEECCSS
T ss_pred             EEEECCCCc---------ceeEEecCCCCCEEEEEEEECCCCCEEEEEe-----CCCEEEEEECCCCcEE--EEEcCCCC
Confidence            899653322         22333 233345667777761 566776632     3456999999988743  33344566


Q ss_pred             cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--ceecccCCCCceeCcCCCE--EEEEeCCcEEEEEC
Q 004971          371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSPKGDR--IAFVEFPGVYVVNS  446 (721)
Q Consensus       371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~SpDG~~--la~~~~~~l~v~d~  446 (721)
                      .+..++|+|+|+.|+....++.         +.++++......  +.........++|+|+|+.  ++...+..+.+|++
T Consensus       230 ~v~~~~~~~~~~~l~~~~~dg~---------v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (814)
T 3mkq_A          230 NVSFAVFHPTLPIIISGSEDGT---------LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL  300 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSC---------EEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred             CEEEEEEcCCCCEEEEEeCCCe---------EEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence            7888999999999888765554         556666543211  1111223345789999974  55557888999987


Q ss_pred             CCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC-------CCccceEEcccCCCCCcceEEc
Q 004971          447 DGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV-------DGVSAVRRLTTNGKNNAFPSVS  519 (721)
Q Consensus       447 ~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~S  519 (721)
                      ..+.         ....++|+|+.++.....      .....++.......       ........+......+..++|+
T Consensus       301 ~~~~---------~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  365 (814)
T 3mkq_A          301 GNDE---------PTLSLDPVGKLVWSGGKN------AAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHS  365 (814)
T ss_dssp             SCCS---------CCEEECSSSEEEEECCTT------SCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEEC
T ss_pred             CCCC---------ceeEECCCCCEEEECccc------ccceeeeeeecccccccccCccceeeeecCCCCccCCceeEEC
Confidence            5543         356788999888875421      11222222221100       0001223333444556789999


Q ss_pred             cCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971          520 PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR  599 (721)
Q Consensus       520 pDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~  599 (721)
                      |||++|++.+    +..+++|++....   ...    ...+..++|||||+.|++...++       .|.+|+.-     
T Consensus       366 pdg~~la~~~----~~~~~i~~~~~~~---~~~----~~~i~~~~~spdg~~la~~~~~g-------~v~l~~~~-----  422 (814)
T 3mkq_A          366 PNGRFVTVVG----DGEYVIYTALAWR---NKA----FGKCQDFVWGPDSNSYALIDETG-------QIKYYKNF-----  422 (814)
T ss_dssp             TTSSEEEEEE----TTEEEEEETTTTE---EEE----EEECSEEEECTTSSCEEEECTTC-------CEEEEETT-----
T ss_pred             CCCCEEEEec----CCEEEEEECcccc---ccC----CCceEEEEEeCCCCeEEEEeCCC-------cEEEEECC-----
Confidence            9999999887    4678899976443   111    12346899999999999888764       67777521     


Q ss_pred             EeeecCCCCCcCCeEECCCC---CEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEE-eccCCCCCCCceecC
Q 004971          600 KLIQSGSAGRANHPYFSPDG---KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR-LTQNSFEDGTPAWGP  675 (721)
Q Consensus       600 ~l~~~~~~~~~~~~~~SpDG---~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-lt~~~~~~~~~~~sp  675 (721)
                        .  ++...+..+.|+|||   ++|++.+.++                 .|++||+.+++... +..+..   ...|+|
T Consensus       423 --~--~~~~~v~~~~~s~dg~~~~~l~~~~~d~-----------------~v~~~d~~~~~~~~~~~~~~~---~v~~s~  478 (814)
T 3mkq_A          423 --K--EVTSWSVPMHSAIDRLFSGALLGVKSDG-----------------FVYFFDWDNGTLVRRIDVNAK---DVIWSD  478 (814)
T ss_dssp             --E--ECTTCCCCCSSCCCEEECSSSEEEEETT-----------------EEEEECTTTCCEEEEESSCEE---EEEECT
T ss_pred             --C--CccceEEcCCcCccceecceEEEEecCC-----------------EEEEEECCcCcEEEEEecCCC---EEEEcC
Confidence              1  144567788999999   5777766654                 49999998887654 443332   789999


Q ss_pred             C
Q 004971          676 R  676 (721)
Q Consensus       676 ~  676 (721)
                      +
T Consensus       479 d  479 (814)
T 3mkq_A          479 N  479 (814)
T ss_dssp             T
T ss_pred             C
Confidence            6

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=3.4e-23  Score=239.41  Aligned_cols=334  Identities=16%  Similarity=0.168  Sum_probs=223.6

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCC----CcccCceeecCCCCEEEEEEecCC---
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPG----LHAFTPATSPGNNKFIAVATRRPT---  343 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sp~dG~~la~~~~~~g---  343 (721)
                      .++|+|||++++.  . .++.+.+|.+  . ++       +..+++.+.    ..+..++||| ||++|++.....+   
T Consensus        20 ~~~~s~dg~~~~~--~-~d~~i~~~~~--~-~g-------~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~   85 (719)
T 1z68_A           20 FPNWISGQEYLHQ--S-ADNNIVLYNI--E-TG-------QSYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWR   85 (719)
T ss_dssp             CCEESSSSEEEEE--C-TTSCEEEEES--S-SC-------CEEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSS
T ss_pred             ccEECCCCeEEEE--c-CCCCEEEEEc--C-CC-------cEEEEEccccccccceeeEEECC-CCCeEEEEecCceeEE
Confidence            5689999987663  2 2666666632  2 22       455555432    1367899999 9999999875321   


Q ss_pred             -CCeeeEEEEECCCCce---EEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceecc
Q 004971          344 -SSYRHIELFDLVKNKF---IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFR  418 (721)
Q Consensus       344 -~~~~~l~l~dl~tg~~---~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~  418 (721)
                       +.+..|++||+++++.   ..+.      ..+..++|||||++|+|...          ..++++++.++.. .++...
T Consensus        86 ~s~~~~i~~~d~~~g~~~~~~~l~------~~~~~~~~SPDG~~la~~~~----------~~i~~~~~~~g~~~~l~~~~  149 (719)
T 1z68_A           86 YSYTATYYIYDLSNGEFVRGNELP------RPIQYLCWSPVGSKLAYVYQ----------NNIYLKQRPGDPPFQITFNG  149 (719)
T ss_dssp             SCEEEEEEEEETTTTEECCSSCCC------SSBCCEEECSSTTCEEEEET----------TEEEEESSTTSCCEECCCCC
T ss_pred             eecceEEEEEECCCCccccceecC------cccccceECCCCCEEEEEEC----------CeEEEEeCCCCCcEEEecCC
Confidence             2356799999999875   3332      34678999999999999742          3578887765422 111111


Q ss_pred             c-------------------CCCCceeCcCCCEEEEEe-C-C---------------------------------cEEEE
Q 004971          419 F-------------------DGSFPSFSPKGDRIAFVE-F-P---------------------------------GVYVV  444 (721)
Q Consensus       419 ~-------------------~~~~~~~SpDG~~la~~~-~-~---------------------------------~l~v~  444 (721)
                      .                   ....++|||||++|++.. + .                                 .|++|
T Consensus       150 ~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~  229 (719)
T 1z68_A          150 RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII  229 (719)
T ss_dssp             BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred             CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence            0                   113689999999999984 1 1                                 78899


Q ss_pred             ECCCCceE---EEe--------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEE----ccCCCCccceEEcc--
Q 004971          445 NSDGSNRR---QVY--------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN----VDDVDGVSAVRRLT--  507 (721)
Q Consensus       445 d~~~g~~~---~l~--------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~l~--  507 (721)
                      |+++++..   .+.        ...+..++||||++.++....     .......||.++    ..++    ....+.  
T Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~-----~~~~~~~l~~~d~~~~~~~g----~~~~~~~~  300 (719)
T 1z68_A          230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLK-----RVQNVSVLSICDFREDWQTW----DCPKTQEH  300 (719)
T ss_dssp             ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEE-----SSTTEEEEEEEEECSSSSSE----ECCGGGEE
T ss_pred             ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEec-----cccCeEEEEEEcccCCCCCC----ceEEEEec
Confidence            99988742   332        234578999999765554332     124456777777    5443    333343  


Q ss_pred             ---cCCCCCc-----ceEEccCCCEEEEE-EeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971          508 ---TNGKNNA-----FPSVSPDGKWIVFR-STRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       508 ---~~~~~~~-----~~~~SpDg~~l~~~-s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~  578 (721)
                         .+...+.     .++|||||+.|++. +..++..+||++|+.+++   ...++.+...+..+.++ ||++|+|....
T Consensus       301 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~---~~~lt~~~~~v~~~~~~-d~~~i~~~~~~  376 (719)
T 1z68_A          301 IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN---AIQITSGKWEAINIFRV-TQDSLFYSSNE  376 (719)
T ss_dssp             EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT---CEECSCSSSCEEEEEEE-CSSEEEEEESC
T ss_pred             ccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc---eEecccCceEEEEEEEE-eCCEEEEEEec
Confidence               2233333     78999999998885 556677899999999887   67888776666677777 99999999875


Q ss_pred             --CCCCCCceeEEEEecCCC--ceEEeeec--CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEE
Q 004971          579 --DNPGSGSFEMYLIHPNGT--GLRKLIQS--GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK  652 (721)
Q Consensus       579 --~~~~~~~~~i~~~d~~~~--~~~~l~~~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d  652 (721)
                        ..  .+...||.++++++  +.+.++..  ++...+..+.|||||++|++.......              +.+++||
T Consensus       377 ~~~~--~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~--------------p~~~l~d  440 (719)
T 1z68_A          377 FEEY--PGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGI--------------PISTLHD  440 (719)
T ss_dssp             GGGC--TTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSS--------------CEEEEEC
T ss_pred             CCCC--CceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCC--------------CeEEEEE
Confidence              10  14568899888666  34555421  022345678999999999887654432              2588899


Q ss_pred             cCCCCeEEecc
Q 004971          653 LDGSDLKRLTQ  663 (721)
Q Consensus       653 ~~~~~~~~lt~  663 (721)
                      +++++..+++.
T Consensus       441 ~~~g~~~~~~~  451 (719)
T 1z68_A          441 GRTDQEIKILE  451 (719)
T ss_dssp             SSSCCEEEEEE
T ss_pred             CCCCCEEEEee
Confidence            98887655554

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.91  E-value=8.4e-22  Score=231.46  Aligned_cols=464  Identities=12%  Similarity=0.078  Sum_probs=277.9

Q ss_pred             eccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeecCCceeEEeeeecCcccccccchhhhc
Q 004971           63 ITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRTALEQ  142 (721)
Q Consensus        63 l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~l~~  142 (721)
                      ..+|...+...+|||||+                           +|| ++..+|.+.||...  +++    . .  .+.
T Consensus        13 ~~gh~~~V~~lafspdg~---------------------------~lA-sgs~Dg~I~lw~~~--~~~----~-~--~~~   55 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQN---------------------------LLA-IATVTGEVHIYGQQ--QVE----V-V--IKL   55 (902)
T ss_dssp             EEECSSCEEEEEEETTTT---------------------------EEE-EEETTSEEEEECST--TCE----E-E--EEC
T ss_pred             ccCCCCCcEEEEECCCCC---------------------------EEE-EEeCCCEEEEEeCC--CcE----E-E--EEc
Confidence            346677788999999997                           554 56688888888542  222    1 1  111


Q ss_pred             cccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceE-eecCCCCCcccc
Q 004971          143 HGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTR-RLTPYGVADFSP  221 (721)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~-~lt~~~~~~~~p  221 (721)
                      ..   ...|  ..+       .|     +|   |++|+..+.++          .|...++.+++.. .+ .+.......
T Consensus        56 ~~---~~~V--~~l-------~f-----sp---g~~L~S~s~D~----------~v~lWd~~~~~~~~~~-~~~~~V~~v  104 (902)
T 2oaj_A           56 ED---RSAI--KEM-------RF-----VK---GIYLVVINAKD----------TVYVLSLYSQKVLTTV-FVPGKITSI  104 (902)
T ss_dssp             SS---CCCE--EEE-------EE-----ET---TTEEEEEETTC----------EEEEEETTTCSEEEEE-ECSSCEEEE
T ss_pred             CC---CCCE--EEE-------EE-----cC---CCEEEEEECcC----------eEEEEECCCCcEEEEE-cCCCCEEEE
Confidence            11   0111  111       56     88   77777766553          4555566665543 44 344455666


Q ss_pred             ccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEe------------ccC--CcceeccCC-eEEEEecc
Q 004971          222 AVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIV------------ENG--GWPCWVDES-TLFFHRKS  286 (721)
Q Consensus       222 ~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~------------~~~--~~~~ws~dg-~l~~~~~~  286 (721)
                      +|+|||++|+....+            ..|.+|++.+++......            +.+  ...+|+|++ .+++.  .
T Consensus       105 ~~sp~g~~l~sgs~d------------g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~--g  170 (902)
T 2oaj_A          105 DTDASLDWMLIGLQN------------GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI--S  170 (902)
T ss_dssp             ECCTTCSEEEEEETT------------SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE--E
T ss_pred             EECCCCCEEEEEcCC------------CcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE--E
Confidence            899999999987644            468999998877532211            111  145899974 45453  3


Q ss_pred             CCCCcEEEEEEecCCCcceeccccceEEeCCC------------------CCcccCceeecCCCCEEEEEEecCCCCeee
Q 004971          287 EEDDWISVYKVILPQTGLVSTESVSIQRVTPP------------------GLHAFTPATSPGNNKFIAVATRRPTSSYRH  348 (721)
Q Consensus       287 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~sp~dG~~la~~~~~~g~~~~~  348 (721)
                      ..++.+ +|.+....         ....+..+                  ...+..++|+| ||++|+...     .+..
T Consensus       171 ~~dg~v-lWd~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs-----~Dg~  234 (902)
T 2oaj_A          171 YEYVTL-TYSLVENE---------IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIH-----EDNS  234 (902)
T ss_dssp             CSSCEE-EEETTTTE---------EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEE-----TTCC
T ss_pred             eCCCcE-EEECCCCc---------eEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEE-----CCCe
Confidence            347888 99643221         22222221                  23467889999 999988854     3456


Q ss_pred             EEEEECCCCceEEeecc---cC-------------CCCcccCcEEc----CCCCEEEEEEeeCCCCCCCCcceeEEEecc
Q 004971          349 IELFDLVKNKFIELTRF---VS-------------PKTHHLNPFIS----PDSSRVGYHKCRGGSTREDGNNQLLLENIK  408 (721)
Q Consensus       349 l~l~dl~tg~~~~l~~~---~~-------------~~~~~~~~~~S----pdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  408 (721)
                      |++||+.+++.......   ..             +...+..++|+    ||+..+++.........   ...+.++++.
T Consensus       235 i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~---~~~v~~~~~~  311 (902)
T 2oaj_A          235 LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGD---NQSLTMIDLG  311 (902)
T ss_dssp             EEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSS---CCCEEEEEEE
T ss_pred             EEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCC---CceEEEEecC
Confidence            99999999875432111   00             12246678885    55555555443321100   0123333321


Q ss_pred             -CCC----------------Ccceecc----cCCCCceeCc----------CCCEEEEE-eCCcEEEEECCCCceEEE--
Q 004971          409 -SPL----------------PDISLFR----FDGSFPSFSP----------KGDRIAFV-EFPGVYVVNSDGSNRRQV--  454 (721)
Q Consensus       409 -~~~----------------~~~~~~~----~~~~~~~~Sp----------DG~~la~~-~~~~l~v~d~~~g~~~~l--  454 (721)
                       .+.                .......    .....+.+.+          |+..++.. .++.|++|++.++....-  
T Consensus       312 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~  391 (902)
T 2oaj_A          312 YTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKAS  391 (902)
T ss_dssp             ECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGG
T ss_pred             CCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccc
Confidence             000                0000110    0111122222          34455555 468899999876632110  


Q ss_pred             ----------------------------------------e--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971          455 ----------------------------------------Y--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI  492 (721)
Q Consensus       455 ----------------------------------------~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~  492 (721)
                                                              .  ...+..++|+|||+.|+..+       .++.+++|++
T Consensus       392 ~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs-------~DgtVrlWd~  464 (902)
T 2oaj_A          392 LFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGH-------SNGSVRIYDA  464 (902)
T ss_dssp             GSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEE-------TTSEEEEEES
T ss_pred             cCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEec-------CCCcEEEEEC
Confidence                                                    0  01223467899999999887       6799999998


Q ss_pred             EccCCCCccceE--Ecc-----cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc------------------
Q 004971          493 NVDDVDGVSAVR--RLT-----TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG------------------  547 (721)
Q Consensus       493 ~~~~~~~~~~~~--~l~-----~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~------------------  547 (721)
                      ..... ......  .+.     .+...+..++|||||++|+..+.   +..|.+|++.+++.                  
T Consensus       465 ~~g~~-~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~---DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~  540 (902)
T 2oaj_A          465 SHGDI-QDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE---TGDVVLFKYEVNQFYSVENRPESGDLEMNFRR  540 (902)
T ss_dssp             SCCTT-TTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET---TSCEEEEEEEECCC---------------CCS
T ss_pred             CCccc-cCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec---CcEEEEEEecCccccCccccCCCcccceeeee
Confidence            65421 000011  111     34457888999999999999987   77899999876631                  


Q ss_pred             -------------------------cceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971          548 -------------------------YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI  602 (721)
Q Consensus       548 -------------------------~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  602 (721)
                                               ..+..+..+...+..++||||| .||.++.++       .|.+||+.++......
T Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~-------tv~lwd~~~~~~~~~~  612 (902)
T 2oaj_A          541 FSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAG-------SLMLIDRRGPAIIYME  612 (902)
T ss_dssp             CCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTS-------EEEEEETTTTEEEEEE
T ss_pred             ccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCC-------cEEEEECCCCeEEEEe
Confidence                                     1133445566778999999999 999998875       8999999887543211


Q ss_pred             e-----cCCCCCcCCeEEC-----CCC---CEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEc---CCCC-eEEecc
Q 004971          603 Q-----SGSAGRANHPYFS-----PDG---KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL---DGSD-LKRLTQ  663 (721)
Q Consensus       603 ~-----~~~~~~~~~~~~S-----pDG---~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~---~~~~-~~~lt~  663 (721)
                      .     .+|...+.+++||     |||   ++|+..+.++                 .|.+||+   .+|+ ...+..
T Consensus       613 ~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~-----------------tv~~wd~~p~~~g~~~~~~~~  673 (902)
T 2oaj_A          613 NIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG-----------------EVITYKILPASGGKFDVQLMD  673 (902)
T ss_dssp             EGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS-----------------EEEEEEEEECGGGCEEEEEEE
T ss_pred             ehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCC-----------------cEEEEEEecCCCCcEEEEecC
Confidence            1     1366778999999     986   7887777665                 3888887   5554 345544

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.91  E-value=4.9e-22  Score=205.64  Aligned_cols=274  Identities=12%  Similarity=0.069  Sum_probs=206.5

Q ss_pred             CCCCCcccCceeecCC----CCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeC
Q 004971          316 TPPGLHAFTPATSPGN----NKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRG  391 (721)
Q Consensus       316 ~~~~~~~~~~~~sp~d----G~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~  391 (721)
                      ..+...+..++|+| +    ++.|+..+     .+..|.+||+.+++........++...+..+.|++++..++..+.++
T Consensus        29 ~~H~~~V~~v~~~~-~~~~~~~~l~tgs-----~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~  102 (321)
T 3ow8_A           29 QAHDDAIWSVAWGT-NKKENSETVVTGS-----LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA  102 (321)
T ss_dssp             TSSSSCEEEEEEC--------CEEEEEE-----TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             ccCCCcEEEEEEec-CCCCCCCEEEEEc-----CCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence            35566778889987 6    45666643     44569999998776544444566777888999999999888766554


Q ss_pred             CCCCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEc
Q 004971          392 GSTREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWD  465 (721)
Q Consensus       392 ~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~s  465 (721)
                      .         +.++++..+..  .+.........++|+|||++|+... ++.+.+|++.+++.....   ...+..++|+
T Consensus       103 ~---------i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~s  173 (321)
T 3ow8_A          103 H---------IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS  173 (321)
T ss_dssp             E---------EEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEEC
T ss_pred             c---------EEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEEC
Confidence            4         56666655421  1111223345689999999999884 788999999988754433   3467889999


Q ss_pred             CCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCC
Q 004971          466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG  545 (721)
Q Consensus       466 pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g  545 (721)
                      |||++|+..+       .++.+.||++....     ....+..+...+..++|+|||++|+..+.   +..|++||+.++
T Consensus       174 pdg~~lasg~-------~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~spd~~~l~s~s~---dg~i~iwd~~~~  238 (321)
T 3ow8_A          174 PDGKYLASGA-------IDGIINIFDIATGK-----LLHTLEGHAMPIRSLTFSPDSQLLVTASD---DGYIKIYDVQHA  238 (321)
T ss_dssp             TTSSEEEEEE-------TTSCEEEEETTTTE-----EEEEECCCSSCCCEEEECTTSCEEEEECT---TSCEEEEETTTC
T ss_pred             CCCCEEEEEc-------CCCeEEEEECCCCc-----EEEEEcccCCceeEEEEcCCCCEEEEEcC---CCeEEEEECCCc
Confidence            9999999987       56889998875432     45566667777889999999999998876   778999999987


Q ss_pred             cccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEE
Q 004971          546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT  625 (721)
Q Consensus       546 ~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~  625 (721)
                      +.  ...+..+...+..++|+|||++|+.++.++       .|.+||+.+++....... +...+..++|+|||++|+..
T Consensus       239 ~~--~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~-------~v~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~g~~l~s~  308 (321)
T 3ow8_A          239 NL--AGTLSGHASWVLNVAFCPDDTHFVSSSSDK-------SVKVWDVGTRTCVHTFFD-HQDQVWGVKYNGNGSKIVSV  308 (321)
T ss_dssp             CE--EEEECCCSSCEEEEEECTTSSEEEEEETTS-------CEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEE
T ss_pred             ce--eEEEcCCCCceEEEEECCCCCEEEEEeCCC-------cEEEEeCCCCEEEEEEcC-CCCcEEEEEECCCCCEEEEE
Confidence            75  566666777788999999999999998875       899999998876655433 67788999999999999887


Q ss_pred             EecC
Q 004971          626 SDYG  629 (721)
Q Consensus       626 ~~~~  629 (721)
                      +.++
T Consensus       309 ~~d~  312 (321)
T 3ow8_A          309 GDDQ  312 (321)
T ss_dssp             ETTC
T ss_pred             eCCC
Confidence            7665

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=7.3e-22  Score=227.76  Aligned_cols=293  Identities=18%  Similarity=0.272  Sum_probs=208.0

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      .+..++||| | +++++...      ..|++||+.+++...+...   ...+..++|||||++|++.. +         .
T Consensus        83 ~v~~~~~sp-d-~~~~~~~~------~~i~~~d~~~~~~~~l~~~---~~~~~~~~~SpdG~~la~~~-~---------~  141 (706)
T 2z3z_A           83 PSFRTLDAG-R-GLVVLFTQ------GGLVGFDMLARKVTYLFDT---NEETASLDFSPVGDRVAYVR-N---------H  141 (706)
T ss_dssp             CCEEEEETT-T-TEEEEEET------TEEEEEETTTTEEEEEECC---TTCCTTCEECTTSSEEEEEE-T---------T
T ss_pred             CceeEEECC-C-CeEEEEEC------CEEEEEECCCCceEEccCC---cccccCCcCCCCCCEEEEEE-C---------C
Confidence            467889999 9 78888642      4599999999876665432   45577899999999999953 2         3


Q ss_pred             eeEEEeccC-----CCC-cceecccC---------------CCCceeCcCCCEEEEEe----------------------
Q 004971          401 QLLLENIKS-----PLP-DISLFRFD---------------GSFPSFSPKGDRIAFVE----------------------  437 (721)
Q Consensus       401 ~l~~~~~~~-----~~~-~~~~~~~~---------------~~~~~~SpDG~~la~~~----------------------  437 (721)
                      .++++++.+     +.. .++.....               ...+.|||||++|++..                      
T Consensus       142 ~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~  221 (706)
T 2z3z_A          142 NLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESK  221 (706)
T ss_dssp             EEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEE
T ss_pred             eEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceE
Confidence            588888876     422 22221111               25689999999999984                      


Q ss_pred             ------------CCcEEEEECCCCceEEEee-----cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc
Q 004971          438 ------------FPGVYVVNSDGSNRRQVYF-----KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV  500 (721)
Q Consensus       438 ------------~~~l~v~d~~~g~~~~l~~-----~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~  500 (721)
                                  ...|++||+++++...+..     ..+..+.|||||++|++.+..    .......|+.++..++   
T Consensus       222 ~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~----~~~~~~~v~~~d~~~g---  294 (706)
T 2z3z_A          222 PLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVN----RAQNECKVNAYDAETG---  294 (706)
T ss_dssp             EECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEEC----TTSCEEEEEEEETTTC---
T ss_pred             EeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeC----CCCCeeEEEEEECCCC---
Confidence                        2469999999998766651     245689999999999997632    1234566777776552   


Q ss_pred             cceEEccc--CCC---CCcceEEcc--CCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCcee-eEEccCCCEE
Q 004971          501 SAVRRLTT--NGK---NNAFPSVSP--DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTM-CNWSPDGEWI  572 (721)
Q Consensus       501 ~~~~~l~~--~~~---~~~~~~~Sp--Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~-~~~SpDG~~l  572 (721)
                      ...+.+..  ...   ....++|||  ||++| +.+.+++..+||.++..++.   +..++.+...+.. ++|||||++|
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l-~~~~~~g~~~l~~~~~~~~~---~~~l~~~~~~v~~~~~~spdg~~l  370 (706)
T 2z3z_A          295 RFVRTLFVETDKHYVEPLHPLTFLPGSNNQFI-WQSRRDGWNHLYLYDTTGRL---IRQVTKGEWEVTNFAGFDPKGTRL  370 (706)
T ss_dssp             CEEEEEEEEECSSCCCCCSCCEECTTCSSEEE-EEECTTSSCEEEEEETTSCE---EEECCCSSSCEEEEEEECTTSSEE
T ss_pred             ceeeEEEEccCCCeECccCCceeecCCCCEEE-EEEccCCccEEEEEECCCCE---EEecCCCCeEEEeeeEEcCCCCEE
Confidence            12333322  111   235689999  99855 55556667789999977655   7788877666555 7999999999


Q ss_pred             EEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEE
Q 004971          573 AFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK  652 (721)
Q Consensus       573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d  652 (721)
                      ++......  .....||.+|+++++.+.++   +...+..++|||||++|++.......             +++||+||
T Consensus       371 ~~~~~~~~--~~~~~l~~~d~~~~~~~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~-------------p~~i~l~d  432 (706)
T 2z3z_A          371 YFESTEAS--PLERHFYCIDIKGGKTKDLT---PESGMHRTQLSPDGSAIIDIFQSPTV-------------PRKVTVTN  432 (706)
T ss_dssp             EEEESSSC--TTCBEEEEEETTCCCCEESC---CSSSEEEEEECTTSSEEEEEEECSSC-------------SCEEEEEE
T ss_pred             EEEecCCC--CceEEEEEEEcCCCCceecc---CCCceEEEEECCCCCEEEEEecCCCC-------------CcEEEEEE
Confidence            99887631  12468999999988877775   34457789999999999988765543             24699999


Q ss_pred             cCCCCeEEecc
Q 004971          653 LDGSDLKRLTQ  663 (721)
Q Consensus       653 ~~~~~~~~lt~  663 (721)
                      +++++.+.++.
T Consensus       433 ~~~~~~~~~~~  443 (706)
T 2z3z_A          433 IGKGSHTLLEA  443 (706)
T ss_dssp             SSSCEEEEEEC
T ss_pred             CCCCeEeeccc
Confidence            99887444543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.90  E-value=7.3e-22  Score=231.60  Aligned_cols=415  Identities=10%  Similarity=0.038  Sum_probs=269.2

Q ss_pred             ceeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCceEEEEeeecCCceeEEeeeecCcccccccch
Q 004971           59 NEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPLQLIYVTERNGTSNIYYDAVYYDTRRNTRSRT  138 (721)
Q Consensus        59 ~~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~  138 (721)
                      ....+..|...+...+|||||+                           +|+..+ .+|.+.||.+.  +++.   ... 
T Consensus        47 ~~~~~~~~~~~v~~~~~s~~~~---------------------------~l~~~~-~dg~i~vw~~~--~~~~---~~~-   92 (814)
T 3mkq_A           47 EVRSIQVTETPVRAGKFIARKN---------------------------WIIVGS-DDFRIRVFNYN--TGEK---VVD-   92 (814)
T ss_dssp             EEEEEECCSSCEEEEEEEGGGT---------------------------EEEEEE-TTSEEEEEETT--TCCE---EEE-
T ss_pred             eEEEEecCCCcEEEEEEeCCCC---------------------------EEEEEe-CCCeEEEEECC--CCcE---EEE-
Confidence            4567778899999999999998                           777654 57887788764  4431   111 


Q ss_pred             hhh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCC
Q 004971          139 ALE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVA  217 (721)
Q Consensus       139 ~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~  217 (721)
                       +. +..   ...    .+       .|     +|  +|++|+..+.++.        ..+|.++........+..+...
T Consensus        93 -~~~~~~---~v~----~~-------~~-----s~--~~~~l~~~~~dg~--------i~vw~~~~~~~~~~~~~~~~~~  142 (814)
T 3mkq_A           93 -FEAHPD---YIR----SI-------AV-----HP--TKPYVLSGSDDLT--------VKLWNWENNWALEQTFEGHEHF  142 (814)
T ss_dssp             -EECCSS---CEE----EE-------EE-----CS--SSSEEEEEETTSE--------EEEEEGGGTSEEEEEEECCSSC
T ss_pred             -EecCCC---CEE----EE-------EE-----eC--CCCEEEEEcCCCE--------EEEEECCCCceEEEEEcCCCCc
Confidence             33 221   111    11       57     99  9999888765531        3455443222334556566666


Q ss_pred             ccccccCC-CCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEecc--C--Ccceecc--CCeEEEEeccCCCC
Q 004971          218 DFSPAVSP-SGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVEN--G--GWPCWVD--ESTLFFHRKSEEDD  290 (721)
Q Consensus       218 ~~~p~~SP-DG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~--~--~~~~ws~--dg~l~~~~~~~~~g  290 (721)
                      ....+|+| ||+.|+++..+            ..|.+|++.+++........  .  ....|+|  ++.++++  ...++
T Consensus       143 v~~~~~~p~~~~~l~~~~~d------------g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--~~~dg  208 (814)
T 3mkq_A          143 VMCVAFNPKDPSTFASGCLD------------RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT--ASDDL  208 (814)
T ss_dssp             EEEEEEETTEEEEEEEEETT------------SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEE--ECTTS
T ss_pred             EEEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEE--EeCCC
Confidence            67779999 88888886643            46999999877755444322  2  2558988  8876663  33478


Q ss_pred             cEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCC
Q 004971          291 WISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKT  370 (721)
Q Consensus       291 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~  370 (721)
                      .+.+|+.....         ....+..+...+..++|+| +|+.|+...     .++.|++||+.+++....  ...+..
T Consensus       209 ~i~~~d~~~~~---------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-----~dg~v~vwd~~~~~~~~~--~~~~~~  271 (814)
T 3mkq_A          209 TIKIWDYQTKS---------CVATLEGHMSNVSFAVFHP-TLPIIISGS-----EDGTLKIWNSSTYKVEKT--LNVGLE  271 (814)
T ss_dssp             EEEEEETTTTE---------EEEEEECCSSCEEEEEECS-SSSEEEEEE-----TTSCEEEEETTTCSEEEE--ECCSSS
T ss_pred             EEEEEECCCCc---------EEEEEcCCCCCEEEEEEcC-CCCEEEEEe-----CCCeEEEEECCCCcEEEE--eecCCC
Confidence            88888543221         3444555666778899999 999888754     334599999998874333  334456


Q ss_pred             cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe----CCcEEEEEC
Q 004971          371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNS  446 (721)
Q Consensus       371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~  446 (721)
                      .+..++|+|+|+.+++......        .+.+.++...          .....++|+|+.++...    ...++...+
T Consensus       272 ~v~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~----------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  333 (814)
T 3mkq_A          272 RSWCIATHPTGRKNYIASGFDN--------GFTVLSLGND----------EPTLSLDPVGKLVWSGGKNAAASDIFTAVI  333 (814)
T ss_dssp             SEEEEEECTTCGGGEEEEEETT--------EEEEEECSCC----------SCCEEECSSSEEEEECCTTSCTTCEEEEEC
T ss_pred             cEEEEEEccCCCceEEEEEeCC--------CEEEEEcCCC----------CceeEECCCCCEEEECcccccceeeeeeec
Confidence            7788999999986433233222        2444444332          22368899998777652    233444332


Q ss_pred             C------CCce-----EEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCC
Q 004971          447 D------GSNR-----RQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN  513 (721)
Q Consensus       447 ~------~g~~-----~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~  513 (721)
                      .      .+..     ..+.  ...+..++|+|||+.+++.+        ++.+.||.+...      ....    .+.+
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~--------~~~~~i~~~~~~------~~~~----~~~i  395 (814)
T 3mkq_A          334 RGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG--------DGEYVIYTALAW------RNKA----FGKC  395 (814)
T ss_dssp             CSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE--------TTEEEEEETTTT------EEEE----EEEC
T ss_pred             ccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec--------CCEEEEEECccc------cccC----CCce
Confidence            2      2221     1222  23567899999999999886        467778774321      1111    1245


Q ss_pred             cceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCC---CEEEEEEccCCCCCCceeEEE
Q 004971          514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG---EWIAFASDRDNPGSGSFEMYL  590 (721)
Q Consensus       514 ~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG---~~l~~~~~~~~~~~~~~~i~~  590 (721)
                      ..++|||||++|++...   +..|.+|+.-.+          +...+..+.|+|||   +.|++...++       .|++
T Consensus       396 ~~~~~spdg~~la~~~~---~g~v~l~~~~~~----------~~~~v~~~~~s~dg~~~~~l~~~~~d~-------~v~~  455 (814)
T 3mkq_A          396 QDFVWGPDSNSYALIDE---TGQIKYYKNFKE----------VTSWSVPMHSAIDRLFSGALLGVKSDG-------FVYF  455 (814)
T ss_dssp             SEEEECTTSSCEEEECT---TCCEEEEETTEE----------CTTCCCCCSSCCCEEECSSSEEEEETT-------EEEE
T ss_pred             EEEEEeCCCCeEEEEeC---CCcEEEEECCCC----------ccceEEcCCcCccceecceEEEEecCC-------EEEE
Confidence            67999999999998875   667888853321          22334678899998   6788777765       8999


Q ss_pred             EecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEec
Q 004971          591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY  628 (721)
Q Consensus       591 ~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~  628 (721)
                      ||+.+++....... +.   ..+.|||||++|++.+.+
T Consensus       456 ~d~~~~~~~~~~~~-~~---~~v~~s~dg~~la~~~~~  489 (814)
T 3mkq_A          456 FDWDNGTLVRRIDV-NA---KDVIWSDNGELVMIVNTN  489 (814)
T ss_dssp             ECTTTCCEEEEESS-CE---EEEEECTTSSEEEEEECC
T ss_pred             EECCcCcEEEEEec-CC---CEEEEcCCCCEEEEEEcC
Confidence            99998876665432 22   289999999999998643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.90  E-value=1.7e-21  Score=202.39  Aligned_cols=304  Identities=10%  Similarity=0.002  Sum_probs=215.2

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      ..+|+|||++++....  .+...+|  ..+...       .......+...+..++|+| +|++|+...      +..|.
T Consensus        14 ~~~~s~dg~~~~~~~~--~~~~~~~--~~~~~~-------~~~~~~~h~~~v~~~~~~~-~~~~l~~~~------dg~i~   75 (337)
T 1gxr_A           14 SFHVTADGQMQPVPFP--PDALIGP--GIPRHA-------RQINTLNHGEVVCAVTISN-PTRHVYTGG------KGCVK   75 (337)
T ss_dssp             EEEECSSSCEEECCCC--TTSSSST--TCCSEE-------EEEEEECCSSCCCEEEECS-SSSEEEEEC------BSEEE
T ss_pred             EEEECCCCCEEEeecC--CCcEecc--ccCCcc-------ccceeccCCCceEEEEEec-CCcEEEEcC------CCeEE
Confidence            5689999997663222  2222111  111111       3333445666788999999 999988743      35699


Q ss_pred             EEECCCCceEE-eec--ccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcc-eec---ccCCCC
Q 004971          351 LFDLVKNKFIE-LTR--FVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI-SLF---RFDGSF  423 (721)
Q Consensus       351 l~dl~tg~~~~-l~~--~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~---~~~~~~  423 (721)
                      +||+.+++... +..  ...+...+..++|+|+++.|++...++.         +.++++..+.... ...   ......
T Consensus        76 iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~---------i~~~d~~~~~~~~~~~~~~~~~~i~~  146 (337)
T 1gxr_A           76 VWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST---------LSIWDLAAPTPRIKAELTSSAPACYA  146 (337)
T ss_dssp             EEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE---------EEEEECCCC--EEEEEEECSSSCEEE
T ss_pred             EEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCc---------EEEEECCCCCcceeeecccCCCceEE
Confidence            99998765221 111  1145667888999999999988765443         6666665543111 111   122345


Q ss_pred             ceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971          424 PSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG  499 (721)
Q Consensus       424 ~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~  499 (721)
                      ++|+|+++.|+..+ ++.|++||+.+++.....   ...+..+.|+|+++.|+..+       .++.+.+|++....   
T Consensus       147 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~dg~i~~~d~~~~~---  216 (337)
T 1gxr_A          147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-------LDNTVRSWDLREGR---  216 (337)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSEEEEEETTTTE---
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-------cCCcEEEEECCCCc---
Confidence            78999999998885 788999999988754433   45678999999999999886       46788888765422   


Q ss_pred             ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971          500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD  579 (721)
Q Consensus       500 ~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~  579 (721)
                        ....+ .....+..++|+|||+.|++.+.   +..|++||+.+++   ...+..+...+..++|+|||+.|+.+..++
T Consensus       217 --~~~~~-~~~~~v~~~~~s~~~~~l~~~~~---~~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  287 (337)
T 1gxr_A          217 --QLQQH-DFTSQIFSLGYCPTGEWLAVGME---SSNVEVLHVNKPD---KYQLHLHESCVLSLKFAYCGKWFVSTGKDN  287 (337)
T ss_dssp             --EEEEE-ECSSCEEEEEECTTSSEEEEEET---TSCEEEEETTSSC---EEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             --eEeee-cCCCceEEEEECCCCCEEEEEcC---CCcEEEEECCCCC---eEEEcCCccceeEEEECCCCCEEEEecCCC
Confidence              22233 34456778999999999998886   6789999999887   556666667788999999999999888775


Q ss_pred             CCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          580 NPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       580 ~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                             .|++|++.+++......  +...+..+.|+|||++|+..+.++
T Consensus       288 -------~i~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg  328 (337)
T 1gxr_A          288 -------LLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             -------EEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEEETTS
T ss_pred             -------cEEEEECCCCeEEEEec--CCCcEEEEEECCCCCEEEEecCCC
Confidence                   89999999887664443  567788999999999998877655

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=5.1e-21  Score=194.62  Aligned_cols=262  Identities=24%  Similarity=0.384  Sum_probs=198.7

Q ss_pred             CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccC-CCCccee-cc--
Q 004971          343 TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PLPDISL-FR--  418 (721)
Q Consensus       343 g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~-~~--  418 (721)
                      ++.+..|++||+.+++...+..   +...+..++|||||++|++..   .       ..++++++.+ +...... ..  
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~~---~~~~v~~~~~spdg~~l~~~~---~-------~~i~~~d~~~~~~~~~~~~~~~~   84 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVWQ---TPELFEAPNWSPDGKYLLLNS---E-------GLLYRLSLAGDPSPEKVDTGFAT   84 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEE---ESSCCEEEEECTTSSEEEEEE---T-------TEEEEEESSSCCSCEECCCTTCC
T ss_pred             CCcceeEEEEeCCCCceeeecc---CCcceEeeEECCCCCEEEEEc---C-------CeEEEEeCCCCCCceEecccccc
Confidence            3456779999999988765543   255677899999999999864   2       3578888776 4322111 11  


Q ss_pred             cCCCCceeCcCCCEEEEEe-----CCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971          419 FDGSFPSFSPKGDRIAFVE-----FPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI  492 (721)
Q Consensus       419 ~~~~~~~~SpDG~~la~~~-----~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~  492 (721)
                      .....++|||||++|++..     ...|+.+++.++..+.+. ...+..+.|+|||++|+++..      .++.+.||.+
T Consensus        85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~------~~~~~~l~~~  158 (297)
T 2ojh_A           85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGI------RDQVFDIYSM  158 (297)
T ss_dssp             CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEE------ETTEEEEEEE
T ss_pred             ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEEC------CCCceEEEEE
Confidence            2235589999999999986     467899999888877776 445677899999999997763      4577899999


Q ss_pred             EccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEE
Q 004971          493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWI  572 (721)
Q Consensus       493 ~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l  572 (721)
                      +..+.    ....+..+......+.|+|||++|++.+..++...||.++..++.   +..+..+...+..+.|+|||++|
T Consensus       159 ~~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l  231 (297)
T 2ojh_A          159 DIDSG----VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS---VERITDSAYGDWFPHPSPSGDKV  231 (297)
T ss_dssp             ETTTC----CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---EEECCCCSEEEEEEEECTTSSEE
T ss_pred             ECCCC----cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC---cEEEecCCcccCCeEECCCCCEE
Confidence            98764    667777766677889999999999998876667789988887766   67777666667789999999999


Q ss_pred             EEEEccCCC----CCCceeEEEEecCCCceEEeeec-CCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          573 AFASDRDNP----GSGSFEMYLIHPNGTGLRKLIQS-GSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       573 ~~~~~~~~~----~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      ++...+...    ......|++||+.+++.+.+... .+...+..++|+|||++|++.+.+.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  294 (297)
T 2ojh_A          232 VFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFPV  294 (297)
T ss_dssp             EEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECCC
T ss_pred             EEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEeccC
Confidence            998876310    00235799999999887666532 24567888999999999999888653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.3e-21  Score=227.79  Aligned_cols=433  Identities=9%  Similarity=0.028  Sum_probs=263.2

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeee
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTD  250 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~  250 (721)
                      +|  ||++|+..+.++          .|+..+..+++......+.......+|+| |++|+.++.+            ..
T Consensus        26 sp--dg~~lAsgs~Dg----------~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D------------~~   80 (902)
T 2oaj_A           26 DF--TQNLLAIATVTG----------EVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAK------------DT   80 (902)
T ss_dssp             ET--TTTEEEEEETTS----------EEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETT------------CE
T ss_pred             CC--CCCEEEEEeCCC----------EEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECc------------Ce
Confidence            99  999988877653          55555666665544334555556668999 8888887643            46


Q ss_pred             EEEEEcCCCceeEEEeccCC--cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccce----EEeCCCCCcccC
Q 004971          251 IYIFLTRDGTQRVKIVENGG--WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSI----QRVTPPGLHAFT  324 (721)
Q Consensus       251 i~~~d~~~g~~~~l~~~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  324 (721)
                      |.+|++.+++........+.  ...|+|+++.++.  ...++.+.+|.+....-.  .......    .....+...+..
T Consensus        81 v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~s--gs~dg~V~lwd~~~~~~~--~~~i~~~~~~~~~~~~h~~~V~s  156 (902)
T 2oaj_A           81 VYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLI--GLQNGSMIVYDIDRDQLS--SFKLDNLQKSSFFPAARLSPIVS  156 (902)
T ss_dssp             EEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEE--EETTSCEEEEETTTTEEE--EEEECCHHHHHTCSSSCCCCCCE
T ss_pred             EEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEE--EcCCCcEEEEECCCCccc--cceeccccccccccccCCCCeEE
Confidence            99999998876544433332  4589999987763  334789999964321100  0000000    011234456788


Q ss_pred             ceeecCCC-CEEEEEEecCCCCeeeEEEEECCCCceEEeeccc----------------CCCCcccCcEEcCCCCEEEEE
Q 004971          325 PATSPGNN-KFIAVATRRPTSSYRHIELFDLVKNKFIELTRFV----------------SPKTHHLNPFISPDSSRVGYH  387 (721)
Q Consensus       325 ~~~sp~dG-~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~----------------~~~~~~~~~~~Spdg~~l~~~  387 (721)
                      ++|+| ++ ..++..     ..+..| +||+.+++........                .+...+..++|+|||+.|+..
T Consensus       157 l~~sp-~~~~~l~~g-----~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg  229 (902)
T 2oaj_A          157 IQWNP-RDIGTVLIS-----YEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI  229 (902)
T ss_dssp             EEEET-TEEEEEEEE-----CSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE
T ss_pred             EEEcc-CCCCEEEEE-----eCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE
Confidence            99999 86 444442     244568 9999988754322111                112457789999999999987


Q ss_pred             EeeCCCCCCCCcceeEEEeccCCCCcce--e-----c-------------ccCCCCceeC----cCCCEEEEEe-C----
Q 004971          388 KCRGGSTREDGNNQLLLENIKSPLPDIS--L-----F-------------RFDGSFPSFS----PKGDRIAFVE-F----  438 (721)
Q Consensus       388 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~-----~-------------~~~~~~~~~S----pDG~~la~~~-~----  438 (721)
                      ..++.         +.++++..+.....  .     .             ......++|+    ||+..+++.+ .    
T Consensus       230 s~Dg~---------i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~  300 (902)
T 2oaj_A          230 HEDNS---------LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRG  300 (902)
T ss_dssp             ETTCC---------EEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTS
T ss_pred             ECCCe---------EEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCC
Confidence            76665         55556544321000  0     0             0112346784    5554554442 2    


Q ss_pred             --CcEEEEECC------------------CCceEEEe----ecCceeeEEcC----------CCCeEEEEecCCCCCCCC
Q 004971          439 --PGVYVVNSD------------------GSNRRQVY----FKNAFSTVWDP----------VREAVVYTSGGPEFASES  484 (721)
Q Consensus       439 --~~l~v~d~~------------------~g~~~~l~----~~~~~~~~~sp----------dg~~la~~~~~~~~~~~~  484 (721)
                        ..+.+|++.                  ..+..++.    ...+..+.+.+          |...++..+       .+
T Consensus       301 ~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s-------~d  373 (902)
T 2oaj_A          301 DNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLIL-------GN  373 (902)
T ss_dssp             SCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEE-------TT
T ss_pred             CCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEc-------CC
Confidence              268888742                  11222222    23444555544          334555554       35


Q ss_pred             CcEEEEEEEccCCCCc------------cce------------------------EEcccCCCCCcceEEccCCCEEEEE
Q 004971          485 SEVDIISINVDDVDGV------------SAV------------------------RRLTTNGKNNAFPSVSPDGKWIVFR  528 (721)
Q Consensus       485 ~~~~i~~~~~~~~~~~------------~~~------------------------~~l~~~~~~~~~~~~SpDg~~l~~~  528 (721)
                      +.+++|++........            ..+                        ..+..+......++|+|||+.|+..
T Consensus       374 g~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSg  453 (902)
T 2oaj_A          374 GEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITG  453 (902)
T ss_dssp             SCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEE
T ss_pred             CcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEe
Confidence            6777776521100000            000                        0111222334557899999999998


Q ss_pred             EeeCCceeEEEEECCCCcccceE--E--Cc-----CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce-
Q 004971          529 STRTGYKNLYIMDAEGGEGYGLH--R--LT-----EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL-  598 (721)
Q Consensus       529 s~~~g~~~l~~~d~~~g~~~~~~--~--l~-----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~-  598 (721)
                      +.   +..|.+||+.++......  .  +.     .+...+..++|||||+.||.+..++       .|.+|++.+++. 
T Consensus       454 s~---DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dg-------tV~lwd~~~~~~~  523 (902)
T 2oaj_A          454 HS---NGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETG-------DVVLFKYEVNQFY  523 (902)
T ss_dssp             ET---TSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTS-------CEEEEEEEECCC-
T ss_pred             cC---CCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCc-------EEEEEEecCcccc
Confidence            87   889999999988632111  1  11     3455678999999999999999885       899999876631 


Q ss_pred             --------------------------------------------EEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCC
Q 004971          599 --------------------------------------------RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAE  634 (721)
Q Consensus       599 --------------------------------------------~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~  634 (721)
                                                                  ..... ++.+.+..++||||| +|+..+.+.     
T Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~h~~~V~svafSpdG-~lAsgs~D~-----  596 (902)
T 2oaj_A          524 SVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH-ANKGKTSAINNSNIG-FVGIAYAAG-----  596 (902)
T ss_dssp             --------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC-CCSCSEEEEEECBTS-EEEEEETTS-----
T ss_pred             CccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEE-cCCCcEEEEEecCCc-EEEEEeCCC-----
Confidence                                                        22222 377788999999999 888877665     


Q ss_pred             CCCCCCCCCCCccEEEEEcCCCCeE---Ee---c-cCCCCCCCceec-----CC-----cCCccccc
Q 004971          635 PISTPHQYQPYGEIFKIKLDGSDLK---RL---T-QNSFEDGTPAWG-----PR-----FIRPVDVE  684 (721)
Q Consensus       635 ~~~~~~~~~~~~~l~~~d~~~~~~~---~l---t-~~~~~~~~~~~s-----p~-----~l~~~~~~  684 (721)
                                  .|.+||++++...   .+   . .|...+.+.+||     |+     .|+.+..|
T Consensus       597 ------------tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D  651 (902)
T 2oaj_A          597 ------------SLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDM  651 (902)
T ss_dssp             ------------EEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETT
T ss_pred             ------------cEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecC
Confidence                        3999999887653   22   2 456668889999     76     46665555

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=1.4e-20  Score=216.96  Aligned_cols=318  Identities=12%  Similarity=0.097  Sum_probs=201.6

Q ss_pred             CCEEEEEecCCCCCCCCCccceEEEEeCCCcce--EeecCCC-----------------CCccccccCCCCCEEEEEecC
Q 004971          176 GEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT--RRLTPYG-----------------VADFSPAVSPSGKYTAVASYG  236 (721)
Q Consensus       176 g~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~--~~lt~~~-----------------~~~~~p~~SPDG~~la~~~~~  236 (721)
                      |+.+++....           .| .+++.+|+.  +.+..+.                 ......+|||| ++++++.  
T Consensus        35 g~~~~~~~~~-----------~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~--   99 (706)
T 2z3z_A           35 GDNYVFIEGD-----------DL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT--   99 (706)
T ss_dssp             TTEEEEEETT-----------EE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE--
T ss_pred             CCeEEEEeCC-----------cE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE--
Confidence            6777776543           46 778888877  6554322                 22445689999 7888864  


Q ss_pred             CCCCCcccceeeeeEEEEEcCCCceeEEEeccC--CcceeccCCe-EEEEeccCCCCcEEEEEEecCC--Ccceeccccc
Q 004971          237 NKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENG--GWPCWVDEST-LFFHRKSEEDDWISVYKVILPQ--TGLVSTESVS  311 (721)
Q Consensus       237 ~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~--~~~~ws~dg~-l~~~~~~~~~g~~~l~~~~~~~--~~~~~~~~~~  311 (721)
                                 ...|++|++.+++.+++.....  ..++|||||+ +++.  .  ++.+.+|.+...+  .+       +
T Consensus       100 -----------~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~--~--~~~i~v~~~~~~~~~~g-------~  157 (706)
T 2z3z_A          100 -----------QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV--R--NHNLYIARGGKLGEGMS-------R  157 (706)
T ss_dssp             -----------TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE--E--TTEEEEEECBCTTSCCC-------C
T ss_pred             -----------CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE--E--CCeEEEEecCcccccCC-------C
Confidence                       2589999999998887765433  3679999997 4552  2  4556666433200  02       3


Q ss_pred             eEEeCCCCCc---------------ccCceeecCCCCEEEEEEecCCC----------------------------Ceee
Q 004971          312 IQRVTPPGLH---------------AFTPATSPGNNKFIAVATRRPTS----------------------------SYRH  348 (721)
Q Consensus       312 ~~~~~~~~~~---------------~~~~~~sp~dG~~la~~~~~~g~----------------------------~~~~  348 (721)
                      ..+++.....               +..+.||| ||++|++.......                            ....
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~  236 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT  236 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence            4454443222               47889999 99999998643211                            1223


Q ss_pred             EEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCc
Q 004971          349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP  428 (721)
Q Consensus       349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Sp  428 (721)
                      |++||+++++...+.....+...+                                                 ..++|||
T Consensus       237 l~~~d~~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~sp  267 (706)
T 2z3z_A          237 VGIYHLATGKTVYLQTGEPKEKFL-------------------------------------------------TNLSWSP  267 (706)
T ss_dssp             EEEEETTTTEEEECCCCSCTTCEE-------------------------------------------------EEEEECT
T ss_pred             EEEEECCCCceEeeccCCCCceeE-------------------------------------------------eeEEEEC
Confidence            444444433322221100011112                                                 2356666


Q ss_pred             CCCEEEEEe-C-----CcEEEEECCCC-ceEEEe-e-c-----CceeeEEcC--CCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971          429 KGDRIAFVE-F-----PGVYVVNSDGS-NRRQVY-F-K-----NAFSTVWDP--VREAVVYTSGGPEFASESSEVDIISI  492 (721)
Q Consensus       429 DG~~la~~~-~-----~~l~v~d~~~g-~~~~l~-~-~-----~~~~~~~sp--dg~~la~~~~~~~~~~~~~~~~i~~~  492 (721)
                      ||++|++.. +     ..|++||+.++ ..+.+. . .     .+..+.|||  ||+.++...       .++..+||.+
T Consensus       268 dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~-------~~g~~~l~~~  340 (706)
T 2z3z_A          268 DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSR-------RDGWNHLYLY  340 (706)
T ss_dssp             TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEEC-------TTSSCEEEEE
T ss_pred             CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEc-------cCCccEEEEE
Confidence            666666642 2     26888888887 554444 1 1     135689999  998666553       4577899999


Q ss_pred             EccCCCCccceEEcccCCCCCcc-eEEccCCCEEEEEEeeCC--ceeEEEEECCCCcccceEECcCCCcCceeeEEccCC
Q 004971          493 NVDDVDGVSAVRRLTTNGKNNAF-PSVSPDGKWIVFRSTRTG--YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG  569 (721)
Q Consensus       493 ~~~~~~~~~~~~~l~~~~~~~~~-~~~SpDg~~l~~~s~~~g--~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG  569 (721)
                      +..+.    ..+.++.+...+.. ++|+|||++|++.+..++  ...||++|+.+++   ++.++.. ..+..++|||||
T Consensus       341 ~~~~~----~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~-~~~~~~~~spdg  412 (706)
T 2z3z_A          341 DTTGR----LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK---TKDLTPE-SGMHRTQLSPDG  412 (706)
T ss_dssp             ETTSC----EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC---CEESCCS-SSEEEEEECTTS
T ss_pred             ECCCC----EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC---ceeccCC-CceEEEEECCCC
Confidence            96654    67778776655554 799999999999987654  4589999999887   6667643 345789999999


Q ss_pred             CEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971          570 EWIAFASDRDNPGSGSFEMYLIHPNGTGL  598 (721)
Q Consensus       570 ~~l~~~~~~~~~~~~~~~i~~~d~~~~~~  598 (721)
                      ++|++.....   .....|++||+++++.
T Consensus       413 ~~l~~~~~~~---~~p~~i~l~d~~~~~~  438 (706)
T 2z3z_A          413 SAIIDIFQSP---TVPRKVTVTNIGKGSH  438 (706)
T ss_dssp             SEEEEEEECS---SCSCEEEEEESSSCEE
T ss_pred             CEEEEEecCC---CCCcEEEEEECCCCeE
Confidence            9999886653   2345799999998873

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=5e-22  Score=229.62  Aligned_cols=320  Identities=13%  Similarity=0.093  Sum_probs=210.8

Q ss_pred             cCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCC-CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcce
Q 004971          323 FTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSP-KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQ  401 (721)
Q Consensus       323 ~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~-~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~  401 (721)
                      ..++|+| ||+ +++..     .+..|++||+++++.+.+...... ...+..++|||||++|++...............
T Consensus        19 ~~~~~s~-dg~-~~~~~-----~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~   91 (719)
T 1z68_A           19 FFPNWIS-GQE-YLHQS-----ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT   91 (719)
T ss_dssp             CCCEESS-SSE-EEEEC-----TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             CccEECC-CCe-EEEEc-----CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceE
Confidence            4789999 995 44422     234699999999987766532110 012667999999999999876432111111146


Q ss_pred             eEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-ecC--------------------c
Q 004971          402 LLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-FKN--------------------A  459 (721)
Q Consensus       402 l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-~~~--------------------~  459 (721)
                      ++++++.++.. ...........++|||||++|+|+.+..|++|++.+++.++++ .+.                    .
T Consensus        92 i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~  171 (719)
T 1z68_A           92 YYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK  171 (719)
T ss_dssp             EEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred             EEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence            88888876522 0012223456789999999999999999999999999887776 221                    1


Q ss_pred             eeeEEcCCCCeEEEEecCCCC-C------------------------CCCCcEEEEEEEccCCCCccce---EEcc----
Q 004971          460 FSTVWDPVREAVVYTSGGPEF-A------------------------SESSEVDIISINVDDVDGVSAV---RRLT----  507 (721)
Q Consensus       460 ~~~~~spdg~~la~~~~~~~~-~------------------------~~~~~~~i~~~~~~~~~~~~~~---~~l~----  507 (721)
                      ..+.|||||++|++.+..... .                        .......|+.++..++    ..   ..+.    
T Consensus       172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~----~~~~~~~~~~~~~  247 (719)
T 1z68_A          172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP----AYVGPQEVPVPAM  247 (719)
T ss_dssp             CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH----HHHCCEECCCCHH
T ss_pred             ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC----CccceeEccCCcc
Confidence            479999999999998742100 0                        0123346666666553    22   1222    


Q ss_pred             --cCCCCCcceEEccCCCEEEEEEeeC-CceeEEEEE----CCCCcccceEECc-----CCCcCce-----eeEEccCCC
Q 004971          508 --TNGKNNAFPSVSPDGKWIVFRSTRT-GYKNLYIMD----AEGGEGYGLHRLT-----EGPWSDT-----MCNWSPDGE  570 (721)
Q Consensus       508 --~~~~~~~~~~~SpDg~~l~~~s~~~-g~~~l~~~d----~~~g~~~~~~~l~-----~~~~~~~-----~~~~SpDG~  570 (721)
                        .+...+..++|||||+.++...++. ....|++||    +.+++.   ..+.     .+...+.     .+.|||||+
T Consensus       248 ~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~spdg~  324 (719)
T 1z68_A          248 IASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC---PKTQEHIEESRTGWAGGFFVSTPVFSYDAI  324 (719)
T ss_dssp             HHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC---CGGGEEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred             CCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce---EEEEecccccCCceEccccCCccEECCCCC
Confidence              2344567799999976554444332 345799999    888773   3333     2222233     789999999


Q ss_pred             EEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEec----CCCcCCCCCCCCCCCCCc
Q 004971          571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY----GGISAEPISTPHQYQPYG  646 (721)
Q Consensus       571 ~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~----~~~~~~~~~~~~~~~~~~  646 (721)
                      .|++...+.   .+..+||+||+++++.+.++.  ....+..+.++ ||+.|++.+.+    .+.              .
T Consensus       325 ~l~~~~~~~---~g~~~l~~~~~~~~~~~~lt~--~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~--------------~  384 (719)
T 1z68_A          325 SYYKIFSDK---DGYKHIHYIKDTVENAIQITS--GKWEAINIFRV-TQDSLFYSSNEFEEYPGR--------------R  384 (719)
T ss_dssp             CEEEEEECT---TSCEEEEEESSCSTTCEECSC--SSSCEEEEEEE-CSSEEEEEESCGGGCTTC--------------B
T ss_pred             eEEEEEEcc---CCceEEEEEECCCCceEeccc--CceEEEEEEEE-eCCEEEEEEecCCCCCce--------------E
Confidence            998854433   366799999999988777764  23345566677 99999999876    221              3


Q ss_pred             cEEEEEcCCC--CeEEecc----CCCCCCCceecCC
Q 004971          647 EIFKIKLDGS--DLKRLTQ----NSFEDGTPAWGPR  676 (721)
Q Consensus       647 ~l~~~d~~~~--~~~~lt~----~~~~~~~~~~sp~  676 (721)
                      +||.++++++  +.+.|+.    +......+.|||+
T Consensus       385 ~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~d  420 (719)
T 1z68_A          385 NIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDY  420 (719)
T ss_dssp             EEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGG
T ss_pred             EEEEEeCCCCCCCceeccCccCCCCCceEEEEECCC
Confidence            6999998766  4577774    2233456888885

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.89  E-value=2e-21  Score=207.12  Aligned_cols=313  Identities=14%  Similarity=0.157  Sum_probs=210.8

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCcc-ccccCCCCCEEEEEecCCCCCCcccceeee
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADF-SPAVSPSGKYTAVASYGNKGWDGEVEMLST  249 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~-~p~~SPDG~~la~~~~~~~~w~~~~~~~~~  249 (721)
                      +|  ||++|+|+....+.       ..||.+++++++.++++....... .+.|||||++|+|+..+            .
T Consensus        44 Sp--dG~~l~~~~~~~g~-------~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~------------~  102 (396)
T 3c5m_A           44 TQ--DGKKLLFAGDFDGN-------RNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNE------------L  102 (396)
T ss_dssp             CT--TSCEEEEEECTTSS-------CEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETT------------T
T ss_pred             CC--CCCEEEEEEecCCC-------ceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcC------------C
Confidence            99  99999999876432       389999999999999876554433 37899999999997633            3


Q ss_pred             eEEEEEcCCCceeEEEeccCCcceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeec
Q 004971          250 DIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSP  329 (721)
Q Consensus       250 ~i~~~d~~~g~~~~l~~~~~~~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  329 (721)
                      .||++++.+++.+++.....   .|+++|+.++. ... .....++                          ...+.++|
T Consensus       103 ~l~~~d~~~~~~~~~~~~~~---~~~~~g~~l~~-~~~-~~~~~~~--------------------------~~~~~~sp  151 (396)
T 3c5m_A          103 NLMKVDLETLEEQVIYTVDE---EWKGYGTWVAN-SDC-TKLVGIE--------------------------ILKRDWQP  151 (396)
T ss_dssp             EEEEEETTTCCEEEEEECCT---TEEEEEEEEEC-TTS-SEEEEEE--------------------------EEGGGCCC
T ss_pred             cEEEEECCCCCcEEEEeccc---ccCCCCCEEEe-ccC-Ccccccc--------------------------ccccccCC
Confidence            69999999999887765332   28888764331 111 1111111                          12456899


Q ss_pred             CCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcC-CCCEEEEEEeeCCCCCCCCcceeEEEecc
Q 004971          330 GNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISP-DSSRVGYHKCRGGSTREDGNNQLLLENIK  408 (721)
Q Consensus       330 ~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~  408 (721)
                       ||+++++...........|++||+.+++.+.+...   ...+..+.|+| ||++|++.......   .....+++.++.
T Consensus       152 -dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~---~~~~~l~~~d~~  224 (396)
T 3c5m_A          152 -LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD---TAWLGHPIYRPFDDSTVGFCHEGPHD---LVDARMWLVNED  224 (396)
T ss_dssp             -CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEECSCSS---SCSCCCEEEETT
T ss_pred             -CCcceeeeeeccCCCcceEEEEECCCCcEEeeccC---CcccccceECCCCCCEEEEEecCCCC---CCCceEEEEECC
Confidence             99988774311122446699999999887666532   44566789999 89999998642210   011358888876


Q ss_pred             CCCC-cceec--ccCCCCceeCcCCCEEEEEe----CCc--EEEEECCCCceEEEeecCceeeEEcC-CCCeEEEEecCC
Q 004971          409 SPLP-DISLF--RFDGSFPSFSPKGDRIAFVE----FPG--VYVVNSDGSNRRQVYFKNAFSTVWDP-VREAVVYTSGGP  478 (721)
Q Consensus       409 ~~~~-~~~~~--~~~~~~~~~SpDG~~la~~~----~~~--l~v~d~~~g~~~~l~~~~~~~~~~sp-dg~~la~~~~~~  478 (721)
                      +... .+...  ......+.|||||++|++..    ...  |++||+.+++.+.+.......+.|+| ||+.+++.....
T Consensus       225 ~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~s~~dg~~l~~~~~~~  304 (396)
T 3c5m_A          225 GSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGSLMVGDGCDA  304 (396)
T ss_dssp             SCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEEEEEECSSSSEEEEEECCC
T ss_pred             CCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCCCCccCCCCceEEEecCCc
Confidence            5422 22111  11233469999999998883    234  99999999887776622122389999 999888754210


Q ss_pred             CC-------CCCCCcEEEEEEEccCCCCccceEEcccCCC-----------CCcceEEccCCCEEEEEEeeCCceeEEEE
Q 004971          479 EF-------ASESSEVDIISINVDDVDGVSAVRRLTTNGK-----------NNAFPSVSPDGKWIVFRSTRTGYKNLYIM  540 (721)
Q Consensus       479 ~~-------~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~SpDg~~l~~~s~~~g~~~l~~~  540 (721)
                      .+       ....+...||.++..++    ..+.++.+..           ....++|+|||++|++.+.+.+..+||++
T Consensus       305 p~~~~~~~~~~~~~~~~i~~~d~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          305 PVDVADADSYNIENDPFLYVLNTKAK----SAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             ----------CCCCCCEEEEEETTTT----BCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             ceeeccccccccCCCCcEEEEecccC----ceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence            00       01124467777777664    4556665543           25678999999999999987777899999


Q ss_pred             ECCCCc
Q 004971          541 DAEGGE  546 (721)
Q Consensus       541 d~~~g~  546 (721)
                      ++++++
T Consensus       381 ~~~~~~  386 (396)
T 3c5m_A          381 DVPESY  386 (396)
T ss_dssp             ECCTTC
T ss_pred             EEcccc
Confidence            999877

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.89  E-value=4.3e-21  Score=199.40  Aligned_cols=313  Identities=14%  Similarity=0.081  Sum_probs=214.9

Q ss_pred             cccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCC-CceeEEEeccCC--cceeccCCeEEEEeccCCCCcEEEE
Q 004971          219 FSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRD-GTQRVKIVENGG--WPCWVDESTLFFHRKSEEDDWISVY  295 (721)
Q Consensus       219 ~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~-g~~~~l~~~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~  295 (721)
                      ...+|||||+++++....+.            +..+.... .+......+...  ..+|+||++++++  .. ++.+.+|
T Consensus        13 ~~~~~s~dg~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~--~~-dg~i~iw   77 (337)
T 1gxr_A           13 YSFHVTADGQMQPVPFPPDA------------LIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYT--GG-KGCVKVW   77 (337)
T ss_dssp             CEEEECSSSCEEECCCCTTS------------SSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEE--EC-BSEEEEE
T ss_pred             eEEEECCCCCEEEeecCCCc------------EeccccCCccccceeccCCCceEEEEEecCCcEEEE--cC-CCeEEEE
Confidence            44589999999998654332            11111111 111111222222  4589999987664  33 6889999


Q ss_pred             EEecCCCcceeccccceEEeC--CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCccc
Q 004971          296 KVILPQTGLVSTESVSIQRVT--PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHL  373 (721)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~  373 (721)
                      .+......      .....+.  .+...+..++|+| ++++|+...     .+..|.+||+.+++.........+...+.
T Consensus        78 ~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~~i~  145 (337)
T 1gxr_A           78 DISHPGNK------SPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGG-----EASTLSIWDLAAPTPRIKAELTSSAPACY  145 (337)
T ss_dssp             ETTSTTCC------SCSEEEECSCTTSBEEEEEECT-TSSEEEEEE-----SSSEEEEEECCCC--EEEEEEECSSSCEE
T ss_pred             ECCCCCce------eeeecccccCCCCcEEEEEEcC-CCCEEEEEc-----CCCcEEEEECCCCCcceeeecccCCCceE
Confidence            65443211      0222222  4555678899999 999988854     34569999999887544444455566778


Q ss_pred             CcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCc
Q 004971          374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSN  450 (721)
Q Consensus       374 ~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~  450 (721)
                      .++|+|+++.|+....++.         +.++++.....  .+.........++|+|+|+.|+..+ ++.|++||+.+++
T Consensus       146 ~~~~~~~~~~l~~~~~dg~---------v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  216 (337)
T 1gxr_A          146 ALAISPDSKVCFSCCSDGN---------IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR  216 (337)
T ss_dssp             EEEECTTSSEEEEEETTSC---------EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             EEEECCCCCEEEEEeCCCc---------EEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence            8999999999988765544         56666654421  1111122334579999999998885 7889999999887


Q ss_pred             eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEE
Q 004971          451 RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFR  528 (721)
Q Consensus       451 ~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~  528 (721)
                      .....  ...+..+.|+|+++.|++.+       .++.+.+|++...      ....+..+...+..++|+|||++|+..
T Consensus       217 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~~~~i~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~  283 (337)
T 1gxr_A          217 QLQQHDFTSQIFSLGYCPTGEWLAVGM-------ESSNVEVLHVNKP------DKYQLHLHESCVLSLKFAYCGKWFVST  283 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEE-------TTSCEEEEETTSS------CEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             eEeeecCCCceEEEEECCCCCEEEEEc-------CCCcEEEEECCCC------CeEEEcCCccceeEEEECCCCCEEEEe
Confidence            54443  56778999999999999886       4677888876542      445566666778889999999999988


Q ss_pred             EeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971          529 STRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       529 s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                      +.   +..|++||+.+++.   .....+...+..++|+|||++|+++..++       .|++|++
T Consensus       284 ~~---dg~i~~~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-------~i~iw~~  335 (337)
T 1gxr_A          284 GK---DNLLNAWRTPYGAS---IFQSKESSSVLSCDISVDDKYIVTGSGDK-------KATVYEV  335 (337)
T ss_dssp             ET---TSEEEEEETTTCCE---EEEEECSSCEEEEEECTTSCEEEEEETTS-------CEEEEEE
T ss_pred             cC---CCcEEEEECCCCeE---EEEecCCCcEEEEEECCCCCEEEEecCCC-------eEEEEEE
Confidence            86   77899999998874   33334455678899999999999988775       7888885

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.88  E-value=1.1e-20  Score=197.38  Aligned_cols=275  Identities=10%  Similarity=0.035  Sum_probs=202.9

Q ss_pred             EEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971          313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG  392 (721)
Q Consensus       313 ~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~  392 (721)
                      ..+..+...+..++|+| ||++|+..+     .++.|.+||+.+++..  .....+...+..++|+|+|+.|+....++.
T Consensus        49 ~~l~gH~~~v~~~~~s~-d~~~l~s~s-----~Dg~v~iWd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~  120 (340)
T 1got_B           49 RTLRGHLAKIYAMHWGT-DSRLLLSAS-----QDGKLIIWDSYTTNKV--HAIPLRSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEE-----TTTEEEEEETTTCCEE--EEEECSSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             eeecCCCCceEEEEECC-CCCEEEEEe-----CCCcEEEEECCCCCcc--eEeecCCccEEEEEECCCCCEEEEEeCCCe
Confidence            44566666788999999 999988754     3456999999988743  333445666788999999999988765443


Q ss_pred             CCCCCCcceeEEEeccCCCCcce------ecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe---ecCceee
Q 004971          393 STREDGNNQLLLENIKSPLPDIS------LFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFST  462 (721)
Q Consensus       393 ~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~  462 (721)
                               +.++++........      ..........|+++++ ++.. .++.|.+||+.+++.....   .+.+..+
T Consensus       121 ---------v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~  190 (340)
T 1got_B          121 ---------CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL  190 (340)
T ss_dssp             ---------EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             ---------EEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEE
Confidence                     45555544321111      1111223457888886 4444 5889999999988755433   4568899


Q ss_pred             EEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEEC
Q 004971          463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA  542 (721)
Q Consensus       463 ~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~  542 (721)
                      .|+|+++.++..+       .++.+.+|++....     ....+..+...+..++|+|||++|+..+.   +..|.+||+
T Consensus       191 ~~~~~~~~l~sg~-------~d~~v~~wd~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---d~~v~iwd~  255 (340)
T 1got_B          191 SLAPDTRLFVSGA-------CDASAKLWDVREGM-----CRQTFTGHESDINAICFFPNGNAFATGSD---DATCRLFDL  255 (340)
T ss_dssp             EECTTSSEEEEEE-------TTSCEEEEETTTCS-----EEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEET
T ss_pred             EECCCCCEEEEEe-------CCCcEEEEECCCCe-----eEEEEcCCcCCEEEEEEcCCCCEEEEEcC---CCcEEEEEC
Confidence            9999999988876       57899999875432     45667677777888999999999998887   788999999


Q ss_pred             CCCcccceEECcC--CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCC
Q 004971          543 EGGEGYGLHRLTE--GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK  620 (721)
Q Consensus       543 ~~g~~~~~~~l~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~  620 (721)
                      .+++.  +..+..  ....+..++|+|||+.|+.+..++       .|++||+.+++...... +|...+..++|+|||+
T Consensus       256 ~~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~-------~i~vwd~~~~~~~~~~~-~h~~~v~~~~~s~dg~  325 (340)
T 1got_B          256 RADQE--LMTYSHDNIICGITSVSFSKSGRLLLAGYDDF-------NCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGM  325 (340)
T ss_dssp             TTTEE--EEEECCTTCCSCEEEEEECTTSSEEEEEETTS-------EEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSS
T ss_pred             CCCcE--EEEEccCCcccceEEEEECCCCCEEEEECCCC-------eEEEEEcccCcEeeEee-cCCCcEEEEEEcCCCC
Confidence            88763  333332  223467899999999999998875       89999998887665544 3778889999999999


Q ss_pred             EEEEEEecCC
Q 004971          621 SIVFTSDYGG  630 (721)
Q Consensus       621 ~l~~~~~~~~  630 (721)
                      +|+..+.++.
T Consensus       326 ~l~s~s~D~~  335 (340)
T 1got_B          326 AVATGSWDSF  335 (340)
T ss_dssp             CEEEEETTSC
T ss_pred             EEEEEcCCcc
Confidence            9998877653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=1.3e-21  Score=220.22  Aligned_cols=285  Identities=15%  Similarity=0.132  Sum_probs=199.0

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEee-CCCCCCCCc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCR-GGSTREDGN  399 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~-~~~~~~~~~  399 (721)
                      .+..++||| ||++|+|.+...+    .+.+|++++++.++++..  +...+..++||||  +++|.... ++..    .
T Consensus        23 ~~~~~~~~~-DG~~la~~s~~~g----~~~lw~~~~g~~~~lt~~--~~~~~~~~~~spd--~~l~~~~~~~g~~----~   89 (582)
T 3o4h_A           23 EKYSLQGVV-DGDKLLVVGFSEG----SVNAYLYDGGETVKLNRE--PINSVLDPHYGVG--RVILVRDVSKGAE----Q   89 (582)
T ss_dssp             CEEEEEEEE-TTTEEEEEEEETT----EEEEEEEETTEEEECCSS--CCSEECEECTTCS--EEEEEEECSTTSC----C
T ss_pred             chheeecCC-CCCeEEEEEccCC----ceeEEEEcCCCcEeeecc--cccccccccCCCC--eEEEEeccCCCCc----c
Confidence            456788999 9999999876433    367777878877666532  2245678999999  56665554 2211    1


Q ss_pred             ceeEEEec--cCCCCcceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEe
Q 004971          400 NQLLLENI--KSPLPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTS  475 (721)
Q Consensus       400 ~~l~~~~~--~~~~~~~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~  475 (721)
                      ..+|..++  .+....+.... .....+|||||+.++++  ....+.+||+++++.+++.......+.|||||++|++.+
T Consensus        90 ~~l~~~~~~~~g~~~~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~  168 (582)
T 3o4h_A           90 HALFKVNTSRPGEEQRLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLG  168 (582)
T ss_dssp             EEEEEEETTSTTCCEECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEE
T ss_pred             eEEEEEeccCCCccccccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEE
Confidence            46777777  44432222111 22346899999887777  356777999999998888744448999999999999887


Q ss_pred             cCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC
Q 004971          476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE  555 (721)
Q Consensus       476 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~  555 (721)
                      ..     ..+...||.++..++    +.+.++.+......++|||||++|+ .+.+++..+||+||+++++   ...+..
T Consensus       169 ~~-----~~~~~~i~~~d~~~g----~~~~l~~~~~~~~~~~~SpDG~~l~-~~~~~~~~~i~~~d~~~~~---~~~~~~  235 (582)
T 3o4h_A          169 FF-----GGGRVSLFTSNLSSG----GLRVFDSGEGSFSSASISPGMKVTA-GLETAREARLVTVDPRDGS---VEDLEL  235 (582)
T ss_dssp             EE-----ETTEEEEEEEETTTC----CCEEECCSSCEEEEEEECTTSCEEE-EEECSSCEEEEEECTTTCC---EEECCC
T ss_pred             Ec-----CCCCeEEEEEcCCCC----CceEeecCCCccccceECCCCCEEE-EccCCCeeEEEEEcCCCCc---EEEccC
Confidence            41     123356888887765    6778887777778899999999999 5555556699999999988   445555


Q ss_pred             CCcCceeeE--------EccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEe
Q 004971          556 GPWSDTMCN--------WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD  627 (721)
Q Consensus       556 ~~~~~~~~~--------~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~  627 (721)
                      +...+..++        ||||| .+++.....    +  .+.+|++  |+..+.    ..+.+..++|| ||+.++..+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~----g--~~~l~~~--g~~~~~----~~~~v~~~~~s-dg~~l~~~s~  301 (582)
T 3o4h_A          236 PSKDFSSYRPTAITWLGYLPDG-RLAVVARRE----G--RSAVFID--GERVEA----PQGNHGRVVLW-RGKLVTSHTS  301 (582)
T ss_dssp             SCSHHHHHCCSEEEEEEECTTS-CEEEEEEET----T--EEEEEET--TEEECC----CSSEEEEEEEE-TTEEEEEEEE
T ss_pred             CCcChhhhhhccccceeEcCCC-cEEEEEEcC----C--cEEEEEE--CCeecc----CCCceEEEEec-CCEEEEEEcC
Confidence            555556677        99999 555555442    2  6777887  544331    23556789999 9998877666


Q ss_pred             cCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEe
Q 004971          628 YGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL  661 (721)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l  661 (721)
                      ...              +++||++|+++ +.++|
T Consensus       302 ~~~--------------p~~l~~~d~~~-~~~~l  320 (582)
T 3o4h_A          302 LST--------------PPRIVSLPSGE-PLLEG  320 (582)
T ss_dssp             TTE--------------EEEEEEETTCC-EEECC
T ss_pred             CCC--------------CCeEEEEcCCC-ceEEE
Confidence            554              24799999876 55555

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.3e-20  Score=202.65  Aligned_cols=319  Identities=11%  Similarity=0.010  Sum_probs=219.7

Q ss_pred             cceeccCCe-EEEEeccCCCCcEEEEEE----ecCCCcceeccccceEEeCC----------CCCcccCceeecCCCCEE
Q 004971          271 WPCWVDEST-LFFHRKSEEDDWISVYKV----ILPQTGLVSTESVSIQRVTP----------PGLHAFTPATSPGNNKFI  335 (721)
Q Consensus       271 ~~~ws~dg~-l~~~~~~~~~g~~~l~~~----~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~sp~dG~~l  335 (721)
                      ..+|+|||+ ++++  ...++.+.+|.+    ......   -.......+..          +...+..++|+| +|++|
T Consensus        50 ~~~~s~~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l  123 (425)
T 1r5m_A           50 SSTWNPLDESILAY--GEKNSVARLARIVETDQEGKKY---WKLTIIAELRHPFALSASSGKTTNQVTCLAWSH-DGNSI  123 (425)
T ss_dssp             EEEECSSCTTEEEE--EETBTEEEEEEEEEC------C---EEEEEEEEEECCCCCC------CBCEEEEEECT-TSSEE
T ss_pred             EEEECCCCCcEEEE--ecCCceEEEEEEecccCCcccc---ccccccccccccccccccccCCCCceEEEEEcC-CCCEE
Confidence            568999998 7774  333788999976    222100   00000111211          233677889999 99999


Q ss_pred             EEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC--c
Q 004971          336 AVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--D  413 (721)
Q Consensus       336 a~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~  413 (721)
                      +....     +..|.+||. +++.  +.....+...+..++|+|+++.|+....++.         +.++++..+..  .
T Consensus       124 ~~~~~-----dg~i~i~~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~---------i~iwd~~~~~~~~~  186 (425)
T 1r5m_A          124 VTGVE-----NGELRLWNK-TGAL--LNVLNFHRAPIVSVKWNKDGTHIISMDVENV---------TILWNVISGTVMQH  186 (425)
T ss_dssp             EEEET-----TSCEEEEET-TSCE--EEEECCCCSCEEEEEECTTSSEEEEEETTCC---------EEEEETTTTEEEEE
T ss_pred             EEEeC-----CCeEEEEeC-CCCe--eeeccCCCccEEEEEECCCCCEEEEEecCCe---------EEEEECCCCcEEEE
Confidence            88543     345999994 4442  2233455677888999999999988765544         55555544311  1


Q ss_pred             ceecccC---------------CCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEe
Q 004971          414 ISLFRFD---------------GSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTS  475 (721)
Q Consensus       414 ~~~~~~~---------------~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~  475 (721)
                      +......               ...+.|+|++..++...++.|++||+.+++.....   ...+..+.|+|+++.|+..+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  266 (425)
T 1r5m_A          187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS  266 (425)
T ss_dssp             ECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred             eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence            1111111               45678999875433336889999999887754333   45678999999999999886


Q ss_pred             cCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC
Q 004971          476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE  555 (721)
Q Consensus       476 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~  555 (721)
                             .++.+.+|++....     ....+..+...+..++|+||+ .|+..+.   +..|++||+.+++.  +..+..
T Consensus       267 -------~d~~i~i~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~-~l~~~~~---d~~i~i~d~~~~~~--~~~~~~  328 (425)
T 1r5m_A          267 -------DDGTLRIWHGGNGN-----SQNCFYGHSQSIVSASWVGDD-KVISCSM---DGSVRLWSLKQNTL--LALSIV  328 (425)
T ss_dssp             -------TTSCEEEECSSSBS-----CSEEECCCSSCEEEEEEETTT-EEEEEET---TSEEEEEETTTTEE--EEEEEC
T ss_pred             -------CCCEEEEEECCCCc-----cceEecCCCccEEEEEECCCC-EEEEEeC---CCcEEEEECCCCcE--eEeccc
Confidence                   56889999876543     455666666678889999999 7777776   67999999998874  555555


Q ss_pred             CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc--------------------eEEeeecCCCC--CcCCe
Q 004971          556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG--------------------LRKLIQSGSAG--RANHP  613 (721)
Q Consensus       556 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~--------------------~~~l~~~~~~~--~~~~~  613 (721)
                      +...+..++|+|||+.|+.+..++       .|++||+.+++                    ....... +..  .+..+
T Consensus       329 ~~~~i~~~~~s~~~~~l~~~~~dg-------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~  400 (425)
T 1r5m_A          329 DGVPIFAGRISQDGQKYAVAFMDG-------QVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQS-SQDNDYIFDL  400 (425)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTS-------CEEEEECHHHHC--------------CEECCEEEEECC-TTCCCCEEEE
T ss_pred             CCccEEEEEEcCCCCEEEEEECCC-------eEEEEECCCCccceeeeecccccccCcccchhhhhhcC-cccCCceEEE
Confidence            566778999999999999988775       89999998776                    4444332 433  78899


Q ss_pred             EECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971          614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       614 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                      +|+|||++|+..+.++                 .|++|+++|
T Consensus       401 ~~s~~~~~l~~~~~dg-----------------~i~iw~~~g  425 (425)
T 1r5m_A          401 SWNCAGNKISVAYSLQ-----------------EGSVVAIPG  425 (425)
T ss_dssp             EECTTSSEEEEEESSS-----------------CCEEEECCC
T ss_pred             EccCCCceEEEEecCc-----------------eEEEEeecC
Confidence            9999999998877665                 388888864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=1.1e-19  Score=188.76  Aligned_cols=292  Identities=12%  Similarity=0.084  Sum_probs=193.4

Q ss_pred             ceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEE
Q 004971          325 PATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLL  404 (721)
Q Consensus       325 ~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~  404 (721)
                      ..|++ ++++++.....    +..|.+||+++++.......  +.... .++|+|||++|++.....        ..+++
T Consensus         3 ~~~~~-~~~~~~v~~~~----~~~v~~~d~~~~~~~~~~~~--~~~~~-~~~~s~dg~~l~~~~~~~--------~~i~~   66 (331)
T 3u4y_A            3 AMFQT-TSNFGIVVEQH----LRRISFFSTDTLEILNQITL--GYDFV-DTAITSDCSNVVVTSDFC--------QTLVQ   66 (331)
T ss_dssp             ----C-CCCEEEEEEGG----GTEEEEEETTTCCEEEEEEC--CCCEE-EEEECSSSCEEEEEESTT--------CEEEE
T ss_pred             eeEcC-CCCEEEEEecC----CCeEEEEeCcccceeeeEEc--cCCcc-eEEEcCCCCEEEEEeCCC--------CeEEE
Confidence            45666 77776665432    34699999999986544332  23334 789999999888765533        35788


Q ss_pred             EeccCCCC--cceecccCCCC-ceeCcCCCEEEEEeCC----cEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEe
Q 004971          405 ENIKSPLP--DISLFRFDGSF-PSFSPKGDRIAFVEFP----GVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTS  475 (721)
Q Consensus       405 ~~~~~~~~--~~~~~~~~~~~-~~~SpDG~~la~~~~~----~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~  475 (721)
                      +++.++..  ........... ++|+|||++|+.....    .|++||+.+++.....  ......++|+|||++|+++.
T Consensus        67 ~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  146 (331)
T 3u4y_A           67 IETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILID  146 (331)
T ss_dssp             EECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEE
T ss_pred             EECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEe
Confidence            88766532  11112233445 8999999999844333    8999999988765443  34567899999999988876


Q ss_pred             cCCCCCCCCCc-EEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc-cceEEC
Q 004971          476 GGPEFASESSE-VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG-YGLHRL  553 (721)
Q Consensus       476 ~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~-~~~~~l  553 (721)
                      .      .++. +.+|+++.++.........+ ........++|+|||++|++....  ...|++||+.+++. ..+..+
T Consensus       147 ~------~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~--~~~v~v~d~~~~~~~~~~~~~  217 (331)
T 3u4y_A          147 R------SSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLI--GNSIGILETQNPENITLLNAV  217 (331)
T ss_dssp             E------TTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETT--TTEEEEEECSSTTSCEEEEEE
T ss_pred             c------CCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCC--CCeEEEEECCCCcccceeeec
Confidence            3      3456 89999875442000011222 223356778999999999887753  46799999998873 112333


Q ss_pred             cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC-----CCC---cCCeEECCCCCEEEEE
Q 004971          554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS-----AGR---ANHPYFSPDGKSIVFT  625 (721)
Q Consensus       554 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-----~~~---~~~~~~SpDG~~l~~~  625 (721)
                      .. ......++|+|||++|+++...      ...|++||+.+++.+.+.....     ...   ...++|+|||++|+++
T Consensus       218 ~~-~~~~~~~~~spdg~~l~v~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~  290 (331)
T 3u4y_A          218 GT-NNLPGTIVVSRDGSTVYVLTES------TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS  290 (331)
T ss_dssp             EC-SSCCCCEEECTTSSEEEEECSS------EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred             cC-CCCCceEEECCCCCEEEEEEcC------CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence            33 3445789999999998877643      2479999999987644332111     111   1347999999999888


Q ss_pred             EecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccC
Q 004971          626 SDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN  664 (721)
Q Consensus       626 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~  664 (721)
                      +.+.+                .|.+||++++....+...
T Consensus       291 ~~~~~----------------~v~v~d~~~~~~~~~~~~  313 (331)
T 3u4y_A          291 ANISR----------------ELKVFTISGKVVGYVAGI  313 (331)
T ss_dssp             ETTTT----------------EEEEEETTSCEEEECTTC
T ss_pred             cCCCC----------------cEEEEEecCCcccceecc
Confidence            77654                499999998877666543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.87  E-value=4.8e-20  Score=195.59  Aligned_cols=288  Identities=13%  Similarity=0.112  Sum_probs=208.7

Q ss_pred             EEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971          313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG  392 (721)
Q Consensus       313 ~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~  392 (721)
                      ..+.+|...+..++|+| +|++|+..+     .+..|.+||+.+++..  .....+...+..++|+|+|+.|+....++.
T Consensus        60 ~~l~gH~~~V~~~~~sp-~~~~l~s~s-----~D~~v~iWd~~~~~~~--~~~~~h~~~v~~~~~s~~g~~las~~~d~~  131 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTP-EKNWIVSAS-----QDGRLIVWNALTSQKT--HAIKLHCPWVMECAFAPNGQSVACGGLDSA  131 (380)
T ss_dssp             EEECCCSSCEEEEEECT-TSSCEEEEE-----TTSEEEEEETTTTEEE--EEEECCCTTCCCCEECTTSSEEEECCSSSC
T ss_pred             ecccccccEEEEEEEcC-CCCEEEEEe-----CCCeEEEEECCCCccc--eEEecCCCCEEEEEECCCCCEEEEeeCCCc
Confidence            44566777788999999 999998854     4566999999988743  333455677888999999999988665554


Q ss_pred             CCCCCCcceeEEEeccCCC---------CcceecccCCCCceeCcCCC-EEEEE-eCCcEEEEECCCCceEEEe------
Q 004971          393 STREDGNNQLLLENIKSPL---------PDISLFRFDGSFPSFSPKGD-RIAFV-EFPGVYVVNSDGSNRRQVY------  455 (721)
Q Consensus       393 ~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~SpDG~-~la~~-~~~~l~v~d~~~g~~~~l~------  455 (721)
                               +.++++....         ..+...........|+|++. .|+.. .++.|.+||+.+++.....      
T Consensus       132 ---------v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~  202 (380)
T 3iz6_a          132 ---------CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPS  202 (380)
T ss_dssp             ---------CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSS
T ss_pred             ---------EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCC
Confidence                     3344443210         11112222344568888754 46665 4889999999988765433      


Q ss_pred             --ecCceeeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC
Q 004971          456 --FKNAFSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT  532 (721)
Q Consensus       456 --~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~  532 (721)
                        ...+..+.|++ +++.|+..+       .++.++||++.....    ....+..+...+..++|+|||++|+..+.  
T Consensus       203 ~h~~~v~~~~~~~~~~~~l~sgs-------~D~~v~~wd~~~~~~----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~--  269 (380)
T 3iz6_a          203 GHTADVLSLSINSLNANMFISGS-------CDTTVRLWDLRITSR----AVRTYHGHEGDINSVKFFPDGQRFGTGSD--  269 (380)
T ss_dssp             SCCSCEEEEEECSSSCCEEEEEE-------TTSCEEEEETTTTCC----CCEEECCCSSCCCEEEECTTSSEEEEECS--
T ss_pred             CCccCeEEEEeecCCCCEEEEEE-------CCCeEEEEECCCCCc----ceEEECCcCCCeEEEEEecCCCeEEEEcC--
Confidence              23466788876 778887776       578999999865433    55667777778899999999999998887  


Q ss_pred             CceeEEEEECCCCcccceEECcCCC-------cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee--
Q 004971          533 GYKNLYIMDAEGGEGYGLHRLTEGP-------WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ--  603 (721)
Q Consensus       533 g~~~l~~~d~~~g~~~~~~~l~~~~-------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--  603 (721)
                       +..|.+||+.+++.  +..+....       ..+..++|+|+|+.|+.+..++       .|++||+..++......  
T Consensus       270 -D~~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-------~i~vwd~~~~~~~~~~~~~  339 (380)
T 3iz6_a          270 -DGTCRLFDMRTGHQ--LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG-------DCYVWDTLLAEMVLNLGTL  339 (380)
T ss_dssp             -SSCEEEEETTTTEE--EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS-------CEEEEETTTCCEEEEECCS
T ss_pred             -CCeEEEEECCCCcE--EEEecccccccccccCceEEEEECCCCCEEEEEECCC-------CEEEEECCCCceEEEEecc
Confidence             78999999998874  33332211       1257899999999999888775       89999998877554331  


Q ss_pred             -cCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971          604 -SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       604 -~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  657 (721)
                       .+|...+..++|||||++|+..+.++                 .|.+|++.+.+
T Consensus       340 ~~~h~~~v~~l~~s~dg~~l~sgs~D~-----------------~i~iW~~~~~~  377 (380)
T 3iz6_a          340 QNSHEGRISCLGLSSDGSALCTGSWDK-----------------NLKIWAFSGHR  377 (380)
T ss_dssp             CSSCCCCCCEEEECSSSSEEEEECTTS-----------------CEEEEECCSSS
T ss_pred             cCCCCCceEEEEECCCCCEEEEeeCCC-----------------CEEEEecCCCc
Confidence             23677889999999999998877665                 38999987653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.87  E-value=2.6e-20  Score=192.67  Aligned_cols=272  Identities=17%  Similarity=0.121  Sum_probs=198.9

Q ss_pred             ceeccC----CeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCee
Q 004971          272 PCWVDE----STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYR  347 (721)
Q Consensus       272 ~~ws~d----g~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~  347 (721)
                      .+|+++    +.++++  ...++.+.+|........       ....+..+...+..+.++| ++..++..+     .+.
T Consensus        38 v~~~~~~~~~~~~l~t--gs~D~~v~vW~~~~~~~~-------~~~~l~gh~~~v~~~~~~~-~~~~l~s~s-----~D~  102 (321)
T 3ow8_A           38 VAWGTNKKENSETVVT--GSLDDLVKVWKWRDERLD-------LQWSLEGHQLGVVSVDISH-TLPIAASSS-----LDA  102 (321)
T ss_dssp             EEEC-------CEEEE--EETTSCEEEEEEETTEEE-------EEEEECCCSSCEEEEEECS-SSSEEEEEE-----TTS
T ss_pred             EEEecCCCCCCCEEEE--EcCCCCEEEEECCCCCee-------eeeeeccCCCCEEEEEECC-CCCEEEEEe-----CCC
Confidence            478765    445663  334799999976543211       2233556666788899999 999887744     445


Q ss_pred             eEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec--ccCCCCce
Q 004971          348 HIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF--RFDGSFPS  425 (721)
Q Consensus       348 ~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~  425 (721)
                      .|++||+.+++...  ....+...+..++|+|||+.|+....++         .+.++++..+.......  ......++
T Consensus       103 ~i~lWd~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~g~~dg---------~v~i~~~~~~~~~~~~~~~~~~v~~~~  171 (321)
T 3ow8_A          103 HIRLWDLENGKQIK--SIDAGPVDAWTLAFSPDSQYLATGTHVG---------KVNIFGVESGKKEYSLDTRGKFILSIA  171 (321)
T ss_dssp             EEEEEETTTTEEEE--EEECCTTCCCCEEECTTSSEEEEECTTS---------EEEEEETTTCSEEEEEECSSSCEEEEE
T ss_pred             cEEEEECCCCCEEE--EEeCCCccEEEEEECCCCCEEEEEcCCC---------cEEEEEcCCCceeEEecCCCceEEEEE
Confidence            69999999987433  3334455677899999999998765433         35666665543222111  11234579


Q ss_pred             eCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCcc
Q 004971          426 FSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVS  501 (721)
Q Consensus       426 ~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  501 (721)
                      |+|||++|+..+ ++.|.+||+.+++.....   ...+..++|+||++.|+..+       .++.++||++....     
T Consensus       172 ~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-------~dg~i~iwd~~~~~-----  239 (321)
T 3ow8_A          172 YSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS-------DDGYIKIYDVQHAN-----  239 (321)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC-------TTSCEEEEETTTCC-----
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc-------CCCeEEEEECCCcc-----
Confidence            999999999885 788999999988754433   45678999999999999886       57889999876432     


Q ss_pred             ceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCC
Q 004971          502 AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP  581 (721)
Q Consensus       502 ~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~  581 (721)
                      ....+..+...+..++|+|||++|+..+.   +..|.+||+.+++.  +..+..+...+..++|+|||+.|+.++.++  
T Consensus       240 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~---D~~v~iwd~~~~~~--~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~--  312 (321)
T 3ow8_A          240 LAGTLSGHASWVLNVAFCPDDTHFVSSSS---DKSVKVWDVGTRTC--VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ--  312 (321)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSEEEEEETTC--
T ss_pred             eeEEEcCCCCceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCEE--EEEEcCCCCcEEEEEECCCCCEEEEEeCCC--
Confidence            55667777777888999999999998887   78899999998875  666767777788999999999999888875  


Q ss_pred             CCCceeEEEEec
Q 004971          582 GSGSFEMYLIHP  593 (721)
Q Consensus       582 ~~~~~~i~~~d~  593 (721)
                           .|.+||.
T Consensus       313 -----~i~vwd~  319 (321)
T 3ow8_A          313 -----EIHIYDC  319 (321)
T ss_dssp             -----CEEEEEC
T ss_pred             -----eEEEEeC
Confidence                 7999985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.87  E-value=1.5e-20  Score=201.69  Aligned_cols=274  Identities=11%  Similarity=0.041  Sum_probs=208.0

Q ss_pred             EeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971          314 RVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS  393 (721)
Q Consensus       314 ~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~  393 (721)
                      .+..+...+..++|+| ++++|+...     .+..|.+||+.+++..  .....|...+..++|+|+|+.|+..+.++. 
T Consensus       103 ~l~gh~~~V~~~~~~p-~~~~l~s~s-----~Dg~i~vwd~~~~~~~--~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~-  173 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHP-VFSVMVSAS-----EDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHSGKLLASCSADMT-  173 (410)
T ss_dssp             EEECCSSCEEEEEECS-SSSEEEEEE-----SSSCEEEEETTTCCCC--EEECCCSSCEEEEEECTTSSEEEEEETTSC-
T ss_pred             eecccCCcEEEEEEcC-CCCEEEEEe-----CCCeEEEEECCCCcEE--EEEeccCCcEEEEEEcCCCCEEEEEeCCCe-
Confidence            3455666778899999 999888754     3456999999998743  333556777889999999999988776665 


Q ss_pred             CCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCC
Q 004971          394 TREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPV  467 (721)
Q Consensus       394 ~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spd  467 (721)
                              +.++++.+...  .+.........++|+|+|+.|+..+ ++.|.+||+.++......   ...+..+.|+||
T Consensus       174 --------i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~  245 (410)
T 1vyh_C          174 --------IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD  245 (410)
T ss_dssp             --------CCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred             --------EEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCC
Confidence                    33445443311  1111222344578999999998875 788999999988754333   446778999999


Q ss_pred             CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC--------------------CCEEEE
Q 004971          468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD--------------------GKWIVF  527 (721)
Q Consensus       468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD--------------------g~~l~~  527 (721)
                      |+.|+..+       .++.+.+|++....     ....+..+...+..++|+|+                    |.+|+.
T Consensus       246 g~~l~s~s-------~D~~v~vwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s  313 (410)
T 1vyh_C          246 GTLIASCS-------NDQTVRVWVVATKE-----CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS  313 (410)
T ss_dssp             SSEEEEEE-------TTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             CCEEEEEc-------CCCeEEEEECCCCc-----eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence            99999886       57899999876533     45566666677788899997                    667887


Q ss_pred             EEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCC
Q 004971          528 RSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA  607 (721)
Q Consensus       528 ~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~  607 (721)
                      .+.   +..|++||+.+++.  +..+..+...+..++|+|+|++|+.++.++       .|++||+.+++...... .|.
T Consensus       314 gs~---D~~i~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~-------~i~vwd~~~~~~~~~~~-~h~  380 (410)
T 1vyh_C          314 GSR---DKTIKMWDVSTGMC--LMTLVGHDNWVRGVLFHSGGKFILSCADDK-------TLRVWDYKNKRCMKTLN-AHE  380 (410)
T ss_dssp             EET---TSEEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSCEEEEETTT-------EEEEECCTTSCCCEEEE-CCS
T ss_pred             EeC---CCeEEEEECCCCce--EEEEECCCCcEEEEEEcCCCCEEEEEeCCC-------eEEEEECCCCceEEEEc-CCC
Confidence            776   77899999998875  666666777778999999999999988875       89999998887555444 377


Q ss_pred             CCcCCeEECCCCCEEEEEEecC
Q 004971          608 GRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       608 ~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      ..+..++|+|++.+|+..+.++
T Consensus       381 ~~v~~l~~~~~~~~l~sgs~D~  402 (410)
T 1vyh_C          381 HFVTSLDFHKTAPYVVTGSVDQ  402 (410)
T ss_dssp             SCEEEEEECSSSSCEEEEETTS
T ss_pred             CcEEEEEEcCCCCEEEEEeCCC
Confidence            7889999999999998877765

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.5e-21  Score=207.92  Aligned_cols=315  Identities=11%  Similarity=0.074  Sum_probs=212.9

Q ss_pred             CcceeccCCe-EEEEecc--------CCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEe
Q 004971          270 GWPCWVDEST-LFFHRKS--------EEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATR  340 (721)
Q Consensus       270 ~~~~ws~dg~-l~~~~~~--------~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~  340 (721)
                      ...+|+|||+ ++++...        ..++.+.+|.+......       +......+...+..++|+| +|++|+....
T Consensus        16 ~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~-------~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~   87 (416)
T 2pm9_A           16 ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE-------KPIASLQVDSKFNDLDWSH-NNKIIAGALD   87 (416)
T ss_dssp             CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC-------SCSCCCCCSSCEEEEEECS-SSSCEEEEES
T ss_pred             ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC-------cEEEEEecCCceEEEEECC-CCCeEEEEcc
Confidence            3568999987 6664311        34778899965433211       1222234455678899999 9999988543


Q ss_pred             cCCCCeeeEEEEECCCC--ceEEeecccCCCCcccCcEEcCC-CCEEEEEEeeCCCCCCCCcceeEEEeccCCC------
Q 004971          341 RPTSSYRHIELFDLVKN--KFIELTRFVSPKTHHLNPFISPD-SSRVGYHKCRGGSTREDGNNQLLLENIKSPL------  411 (721)
Q Consensus       341 ~~g~~~~~l~l~dl~tg--~~~~l~~~~~~~~~~~~~~~Spd-g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~------  411 (721)
                           +..|.+||+.+.  ....+.....+...+..++|+|+ ++.|+....++.         +.++++....      
T Consensus        88 -----dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~---------v~iwd~~~~~~~~~~~  153 (416)
T 2pm9_A           88 -----NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGE---------IFIWDMNKCTESPSNY  153 (416)
T ss_dssp             -----SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSC---------EEBCBTTTTSSCTTTC
T ss_pred             -----CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCe---------EEEEECCCCccccccc
Confidence                 345999999871  11133344556777888999999 777776554443         5666665543      


Q ss_pred             Ccce-----ecccCCCCceeCcC-CCEEEEE-eCCcEEEEECCCCceEEEe---------ecCceeeEEcCCCC-eEEEE
Q 004971          412 PDIS-----LFRFDGSFPSFSPK-GDRIAFV-EFPGVYVVNSDGSNRRQVY---------FKNAFSTVWDPVRE-AVVYT  474 (721)
Q Consensus       412 ~~~~-----~~~~~~~~~~~SpD-G~~la~~-~~~~l~v~d~~~g~~~~l~---------~~~~~~~~~spdg~-~la~~  474 (721)
                      ....     ........++|+|+ +..|+.. .++.|.+||+.+++.....         ...+..+.|+|++. .++..
T Consensus       154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  233 (416)
T 2pm9_A          154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA  233 (416)
T ss_dssp             CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE
T ss_pred             cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEE
Confidence            1111     12233456799999 5666666 4788999999988754433         23477899999985 55555


Q ss_pred             ecCCCCCCCCC---cEEEEEEEccCCCCccceEEcc-cCCCCCcceEEcc-CCCEEEEEEeeCCceeEEEEECCCCcccc
Q 004971          475 SGGPEFASESS---EVDIISINVDDVDGVSAVRRLT-TNGKNNAFPSVSP-DGKWIVFRSTRTGYKNLYIMDAEGGEGYG  549 (721)
Q Consensus       475 ~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~Sp-Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~  549 (721)
                      +       .++   .+.+|++.....    ....+. .+...+..++|+| |+++|+..+.   +..|++||+.+++.  
T Consensus       234 ~-------~d~~~~~i~~~d~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~---dg~v~~wd~~~~~~--  297 (416)
T 2pm9_A          234 T-------GSDNDPSILIWDLRNANT----PLQTLNQGHQKGILSLDWCHQDEHLLLSSGR---DNTVLLWNPESAEQ--  297 (416)
T ss_dssp             E-------CCSSSCCCCEEETTSTTS----CSBCCCSCCSSCEEEEEECSSCSSCEEEEES---SSEEEEECSSSCCE--
T ss_pred             E-------CCCCCceEEEEeCCCCCC----CcEEeecCccCceeEEEeCCCCCCeEEEEeC---CCCEEEeeCCCCcc--
Confidence            4       344   888888765432    344455 5556788899999 9999998887   77899999998875  


Q ss_pred             eEECcCCCcCceeeEEccCC-CEEEEEEccCCCCCCceeEEEEecCCCceEEee---------------ec---------
Q 004971          550 LHRLTEGPWSDTMCNWSPDG-EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI---------------QS---------  604 (721)
Q Consensus       550 ~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~---------------~~---------  604 (721)
                      +..+..+...+..++|+||+ +.|+.++.++       .|.+|++.+++.....               ..         
T Consensus       298 ~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (416)
T 2pm9_A          298 LSQFPARGNWCFKTKFAPEAPDLFACASFDN-------KIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEK  370 (416)
T ss_dssp             EEEEECSSSCCCCEEECTTCTTEEEECCSSS-------EEEEEESCCCCCSSCC----------------------CCSC
T ss_pred             ceeecCCCCceEEEEECCCCCCEEEEEecCC-------cEEEEEccCCCCCcccccccccccCCcccccccccccccccc
Confidence            66666666677899999999 7777777664       8999999876532110               00         


Q ss_pred             ----------CCCCCcCCeEECCCCCEEEEEEecC
Q 004971          605 ----------GSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       605 ----------~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                                .+...+..++|||||++|++.+.++
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~  405 (416)
T 2pm9_A          371 PSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGK  405 (416)
T ss_dssp             CCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSS
T ss_pred             cccccccCCccccCCccceEEeeCCeEEEEeCCCC
Confidence                      0123345789999999998776554

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.87  E-value=4.3e-20  Score=193.82  Aligned_cols=276  Identities=10%  Similarity=0.056  Sum_probs=201.1

Q ss_pred             eEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeC
Q 004971          312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRG  391 (721)
Q Consensus       312 ~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~  391 (721)
                      ...+..|...+..++|+| ||++|+..+     .+..|.+||..+++.....  ..+...+...+|+|+|+.|+....++
T Consensus        57 ~~~l~gH~~~V~~~~~s~-d~~~l~s~s-----~Dg~v~vWd~~~~~~~~~~--~~~~~~v~~~~~sp~g~~lasg~~d~  128 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCK-DKRRIVSSS-----QDGKVIVWDSFTTNKEHAV--TMPCTWVMACAYAPSGCAIACGGLDN  128 (354)
T ss_dssp             EEEEECCSSCEEEEEECT-TSSEEEEEE-----TTSEEEEEETTTCCEEEEE--ECSSSCCCEEEECTTSSEEEEESTTS
T ss_pred             EEEecCCCCeEEEEEECC-CCCEEEEEe-----CCCeEEEEECCCCCcceEE--ecCCCCEEEEEECCCCCEEEEeeCCC
Confidence            344566777788999999 999988754     4566999999888743322  33456677899999999998765444


Q ss_pred             CCCCCCCcceeEEEeccCC--C------CcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCc
Q 004971          392 GSTREDGNNQLLLENIKSP--L------PDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNA  459 (721)
Q Consensus       392 ~~~~~~~~~~l~~~~~~~~--~------~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~  459 (721)
                      .         +.++++...  .      ..+.........+.|+|+++.|+..+ ++.|.+||+.+++.....   ...+
T Consensus       129 ~---------i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v  199 (354)
T 2pbi_B          129 K---------CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV  199 (354)
T ss_dssp             E---------EEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             C---------EEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCe
Confidence            3         334443221  0      01111122234578999999988875 788999999988764433   3456


Q ss_pred             eeeEEcC--CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeE
Q 004971          460 FSTVWDP--VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNL  537 (721)
Q Consensus       460 ~~~~~sp--dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l  537 (721)
                      ..+.|+|  +|+.|+..+       .++.+.+|++....     ....+..+...+..++|+|+|+.|+..+.   +..|
T Consensus       200 ~~~~~~~~~~g~~l~sgs-------~Dg~v~~wd~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---D~~v  264 (354)
T 2pbi_B          200 LCLDLAPSETGNTFVSGG-------CDKKAMVWDMRSGQ-----CVQAFETHESDVNSVRYYPSGDAFASGSD---DATC  264 (354)
T ss_dssp             EEEEECCCSSCCEEEEEE-------TTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEET---TSCE
T ss_pred             EEEEEEeCCCCCEEEEEe-------CCCeEEEEECCCCc-----EEEEecCCCCCeEEEEEeCCCCEEEEEeC---CCeE
Confidence            6777876  578888876       57899999876533     55666667777888999999999998887   7889


Q ss_pred             EEEECCCCcccceEECcCC--CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEE
Q 004971          538 YIMDAEGGEGYGLHRLTEG--PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF  615 (721)
Q Consensus       538 ~~~d~~~g~~~~~~~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~  615 (721)
                      ++||+.+++.  +..+...  ...+..++|+|||+.|+.+..+.       .|++||+.+++...... +|...+..++|
T Consensus       265 ~lwd~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~-------~i~vwd~~~~~~~~~l~-~h~~~v~~l~~  334 (354)
T 2pbi_B          265 RLYDLRADRE--VAIYSKESIIFGASSVDFSLSGRLLFAGYNDY-------TINVWDVLKGSRVSILF-GHENRVSTLRV  334 (354)
T ss_dssp             EEEETTTTEE--EEEECCTTCCSCEEEEEECTTSSEEEEEETTS-------CEEEEETTTCSEEEEEC-CCSSCEEEEEE
T ss_pred             EEEECCCCcE--EEEEcCCCcccceeEEEEeCCCCEEEEEECCC-------cEEEEECCCCceEEEEE-CCCCcEEEEEE
Confidence            9999987763  3333322  23456899999999999988775       89999998887655443 37788899999


Q ss_pred             CCCCCEEEEEEecC
Q 004971          616 SPDGKSIVFTSDYG  629 (721)
Q Consensus       616 SpDG~~l~~~~~~~  629 (721)
                      ||||++|+..+.++
T Consensus       335 spdg~~l~sgs~D~  348 (354)
T 2pbi_B          335 SPDGTAFCSGSWDH  348 (354)
T ss_dssp             CTTSSCEEEEETTS
T ss_pred             CCCCCEEEEEcCCC
Confidence            99999999887765

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.87  E-value=2.1e-20  Score=196.42  Aligned_cols=292  Identities=10%  Similarity=0.003  Sum_probs=193.4

Q ss_pred             CCCCcccCceeecCCCCEEEEEEecCCC-CeeeEEEEECCCCceEE--eecccCCCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971          317 PPGLHAFTPATSPGNNKFIAVATRRPTS-SYRHIELFDLVKNKFIE--LTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS  393 (721)
Q Consensus       317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~-~~~~l~l~dl~tg~~~~--l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~  393 (721)
                      .+...+..++||| ||++|+..+..... -+..|++|+..++....  ......+...+..++|+||++.| ....++. 
T Consensus        40 ~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~-  116 (357)
T 4g56_B           40 CMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSGA-  116 (357)
T ss_dssp             CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTSC-
T ss_pred             cccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCCE-
Confidence            3455678899999 99999987643211 15679999988775321  11222345567889999998654 4444333 


Q ss_pred             CCCCCcceeEEEeccCCCC----ccee--cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeE
Q 004971          394 TREDGNNQLLLENIKSPLP----DISL--FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTV  463 (721)
Q Consensus       394 ~~~~~~~~l~~~~~~~~~~----~~~~--~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~  463 (721)
                              +.++++..+..    ....  .......++|+|||++|+..+ ++.|.+||+.+++.....   ...+..++
T Consensus       117 --------v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~  188 (357)
T 4g56_B          117 --------VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA  188 (357)
T ss_dssp             --------EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             --------EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence                    55555544321    1111  112334579999999998885 788999999988765443   45678899


Q ss_pred             EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc--ccCCCCCcceEEccCCC-EEEEEEeeCCceeEEEE
Q 004971          464 WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL--TTNGKNNAFPSVSPDGK-WIVFRSTRTGYKNLYIM  540 (721)
Q Consensus       464 ~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~SpDg~-~l~~~s~~~g~~~l~~~  540 (721)
                      |+|+++.++++.      ..++.+.||++....     ....+  ..+...+..++|+|++. .|+..+.   +..|++|
T Consensus       189 ~s~~~~~~~~s~------~~dg~v~~wd~~~~~-----~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~---d~~i~~w  254 (357)
T 4g56_B          189 ACPGKDTIFLSC------GEDGRILLWDTRKPK-----PATRIDFCASDTIPTSVTWHPEKDDTFACGDE---TGNVSLV  254 (357)
T ss_dssp             ECTTCSSCEEEE------ETTSCEEECCTTSSS-----CBCBCCCTTCCSCEEEEEECTTSTTEEEEEES---SSCEEEE
T ss_pred             EccCCCceeeee------ccCCceEEEECCCCc-----eeeeeeeccccccccchhhhhcccceEEEeec---ccceeEE
Confidence            999997554443      257889999765432     22222  22334567789999865 5555555   6789999


Q ss_pred             ECCCCcccceEECcCCCcCceeeEEccCCC-EEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC-C
Q 004971          541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGE-WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP-D  618 (721)
Q Consensus       541 d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp-D  618 (721)
                      |+.+++.  +..+..+...+..++|+|||+ .|+.++.+.       .|++||+.+++.....  +|...+..++||| |
T Consensus       255 d~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~-------~i~iwd~~~~~~~~~~--~H~~~V~~vafsP~d  323 (357)
T 4g56_B          255 NIKNPDS--AQTSAVHSQNITGLAYSYHSSPFLASISEDC-------TVAVLDADFSEVFRDL--SHRDFVTGVAWSPLD  323 (357)
T ss_dssp             ESSCGGG--CEEECCCSSCEEEEEECSSSSCCEEEEETTS-------CEEEECTTSCEEEEEC--CCSSCEEEEEECSSS
T ss_pred             ECCCCcE--eEEEeccceeEEEEEEcCCCCCEEEEEeCCC-------EEEEEECCCCcEeEEC--CCCCCEEEEEEeCCC
Confidence            9998875  666666667788999999985 566666664       8999999998766554  3778899999999 8


Q ss_pred             CCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC-CeEEe
Q 004971          619 GKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS-DLKRL  661 (721)
Q Consensus       619 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l  661 (721)
                      +++|+..+.++                 .|++|++... +..++
T Consensus       324 ~~~l~s~s~Dg-----------------~v~iW~~~~~~~~~~~  350 (357)
T 4g56_B          324 HSKFTTVGWDH-----------------KVLHHHLPSEGRTENL  350 (357)
T ss_dssp             TTEEEEEETTS-----------------CEEEEECC--------
T ss_pred             CCEEEEEcCCC-----------------eEEEEECCCCCccccc
Confidence            99988877665                 3899998653 33443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.86  E-value=1.1e-19  Score=190.07  Aligned_cols=293  Identities=15%  Similarity=0.127  Sum_probs=200.8

Q ss_pred             EEeCCCCC-cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEe-ecccCCCCcccCcEEcCCCCEEEEEEee
Q 004971          313 QRVTPPGL-HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIEL-TRFVSPKTHHLNPFISPDSSRVGYHKCR  390 (721)
Q Consensus       313 ~~~~~~~~-~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l-~~~~~~~~~~~~~~~Spdg~~l~~~~~~  390 (721)
                      ..+..+.. .+..++|+| ||++|+...     .+..|++||+.+++.... ....++...+..++|+|||++|+..+.+
T Consensus         9 ~~~~~h~~~~v~~l~~sp-~g~~las~~-----~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D   82 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAWNP-AGTLLASCG-----GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD   82 (345)
T ss_dssp             EEECCSTTSCEEEEEECT-TSSCEEEEE-----TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eeecCCCCCcEEEEEECC-CCCEEEEEc-----CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC
Confidence            34445543 567899999 999998854     345699999988753222 2224567778899999999999987766


Q ss_pred             CCCCCCCCcceeEEEeccCCCC-ccee---cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEE-E---e--ecCc
Q 004971          391 GGSTREDGNNQLLLENIKSPLP-DISL---FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQ-V---Y--FKNA  459 (721)
Q Consensus       391 ~~~~~~~~~~~l~~~~~~~~~~-~~~~---~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~-l---~--~~~~  459 (721)
                      +.       .  .++++..... .+..   .......++|+|||++|+..+ ++.|.+||+..+.... +   .  ...+
T Consensus        83 ~~-------v--~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v  153 (345)
T 3fm0_A           83 AT-------T--CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV  153 (345)
T ss_dssp             SC-------E--EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCE
T ss_pred             Cc-------E--EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCe
Confidence            65       3  3334333211 1111   122344579999999999885 7899999998765322 2   1  4567


Q ss_pred             eeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEE
Q 004971          460 FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI  539 (721)
Q Consensus       460 ~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~  539 (721)
                      ..+.|+|+++.|+..+       .++.+.||++.....   .....+..+...+..++|+|||++|+..+.   +..|.+
T Consensus       154 ~~~~~~p~~~~l~s~s-------~d~~i~~w~~~~~~~---~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~---D~~v~i  220 (345)
T 3fm0_A          154 KHVVWHPSQELLASAS-------YDDTVKLYREEEDDW---VCCATLEGHESTVWSLAFDPSGQRLASCSD---DRTVRI  220 (345)
T ss_dssp             EEEEECSSSSCEEEEE-------TTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEE
T ss_pred             EEEEECCCCCEEEEEe-------CCCcEEEEEecCCCE---EEEEEecCCCCceEEEEECCCCCEEEEEeC---CCeEEE
Confidence            8899999999999887       578999999875321   123456666778889999999999998887   778999


Q ss_pred             EECCCCcc-------------cceEECcC-CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc-----eEE
Q 004971          540 MDAEGGEG-------------YGLHRLTE-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG-----LRK  600 (721)
Q Consensus       540 ~d~~~g~~-------------~~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~-----~~~  600 (721)
                      |+......             ..+..+.. +...+..++|+|++..|+.++.+.       .|.+|+.+.+.     ...
T Consensus       221 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-------~i~vw~~~~~~~~~~~~~~  293 (345)
T 3fm0_A          221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDD-------AIRVFQEDPNSDPQQPTFS  293 (345)
T ss_dssp             EEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTS-------CEEEEEECTTSCTTSCCEE
T ss_pred             eccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCC-------eEEEEEeCCCCCcceeeEE
Confidence            98632211             00112222 445578899999999999988875       78888876542     111


Q ss_pred             e---eecCCCCCcCCeEECCCCC-EEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971          601 L---IQSGSAGRANHPYFSPDGK-SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       601 l---~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  657 (721)
                      +   ...+|...+..++|+|++. .|+..+.++                 .|.+|++.+++
T Consensus       294 ~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg-----------------~v~~W~~~~~~  337 (345)
T 3fm0_A          294 LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG-----------------EVAFWKYQRPE  337 (345)
T ss_dssp             EEEEETTSSSSCEEEEEECSSSTTEEEEEETTS-----------------CEEEEEECC--
T ss_pred             EEeeecccccCcEeEeEEeCCCceEEEEcCCCC-----------------cEEEEEecCCC
Confidence            1   1123667788999999985 676666555                 38999987754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.86  E-value=8.2e-20  Score=192.21  Aligned_cols=294  Identities=12%  Similarity=0.066  Sum_probs=214.8

Q ss_pred             ceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEee
Q 004971          311 SIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCR  390 (721)
Q Consensus       311 ~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~  390 (721)
                      +...+..+...+..++|+| ||++|+...     .+..|.+||+.+++..  .....+...+..++|+|+++.|+....+
T Consensus        24 ~~~~l~~h~~~v~~~~~s~-~~~~l~~~~-----~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d   95 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNK-EGDLLFSCS-----KDSSASVWYSLNGERL--GTLDGHTGTIWSIDVDCFTKYCVTGSAD   95 (369)
T ss_dssp             EEEEEECCSSCEEEEEECT-TSCEEEEEE-----SSSCEEEEETTTCCEE--EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccEEEEEeeceEEEEEEcC-CCCEEEEEe-----CCCEEEEEeCCCchhh--hhhhhcCCcEEEEEEcCCCCEEEEEeCC
Confidence            4455667777788999999 999988854     3345999999988743  3345567778899999999999887654


Q ss_pred             CCCCCCCCcceeEEEeccCCCCcc-eecccCCCCceeCcCCCEEEEEe-C-----CcEEEEECCCCce------------
Q 004971          391 GGSTREDGNNQLLLENIKSPLPDI-SLFRFDGSFPSFSPKGDRIAFVE-F-----PGVYVVNSDGSNR------------  451 (721)
Q Consensus       391 ~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~SpDG~~la~~~-~-----~~l~v~d~~~g~~------------  451 (721)
                      +.         +.++++..+.... .........+.|+|+|+.++... +     +.|.+|++..+..            
T Consensus        96 g~---------i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~  166 (369)
T 3zwl_B           96 YS---------IKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI  166 (369)
T ss_dssp             TE---------EEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred             Ce---------EEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence            43         6667766542211 11223344579999999998885 4     7899999875531            


Q ss_pred             EEEe--ec--CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEE
Q 004971          452 RQVY--FK--NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF  527 (721)
Q Consensus       452 ~~l~--~~--~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~  527 (721)
                      ..+.  .+  .+..+.|+|+++.|++.+       .++.+.+|++.....    ....+..+...+..++|+||+++|++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~  235 (369)
T 3zwl_B          167 HKIITHEGLDAATVAGWSTKGKYIIAGH-------KDGKISKYDVSNNYE----YVDSIDLHEKSISDMQFSPDLTYFIT  235 (369)
T ss_dssp             EEEECCTTCCCEEEEEECGGGCEEEEEE-------TTSEEEEEETTTTTE----EEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             eeccCCcCccceeEEEEcCCCCEEEEEc-------CCCEEEEEECCCCcE----eEEEEecCCCceeEEEECCCCCEEEE
Confidence            1111  11  677899999999999886       467888888765332    55666666677888999999999998


Q ss_pred             EEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCC-------CCCceeEEEEecCCCceEE
Q 004971          528 RSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP-------GSGSFEMYLIHPNGTGLRK  600 (721)
Q Consensus       528 ~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~-------~~~~~~i~~~d~~~~~~~~  600 (721)
                      .+.   +..|++||+.+++.  +..+. ....+..+.|+|+++.|+++..+...       ..+...+++||+.+++...
T Consensus       236 ~~~---d~~i~v~d~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  309 (369)
T 3zwl_B          236 SSR---DTNSFLVDVSTLQV--LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG  309 (369)
T ss_dssp             EET---TSEEEEEETTTCCE--EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE
T ss_pred             ecC---CceEEEEECCCCce--eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh
Confidence            886   77899999998874  33333 45556889999999999998876310       0122279999999888766


Q ss_pred             eeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971          601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       601 l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~  656 (721)
                      .... +...+..++|+|||++|+..+.++                 .|.+|+++.+
T Consensus       310 ~~~~-~~~~v~~~~~s~~~~~l~s~~~dg-----------------~v~iw~~~~~  347 (369)
T 3zwl_B          310 RVQG-HFGPLNTVAISPQGTSYASGGEDG-----------------FIRLHHFEKS  347 (369)
T ss_dssp             EEEC-CSSCEEEEEECTTSSEEEEEETTS-----------------EEEEEEECHH
T ss_pred             heec-ccCcEEEEEECCCCCEEEEEcCCC-----------------eEEEEECccc
Confidence            5543 677889999999999998877665                 4889998765

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.86  E-value=7.4e-20  Score=196.58  Aligned_cols=315  Identities=11%  Similarity=0.060  Sum_probs=215.0

Q ss_pred             CCccccccCCCCC-EEEEEecCCCCCCcccceeeeeEEEEEc----CCCc------eeEEEec----------cC-C--c
Q 004971          216 VADFSPAVSPSGK-YTAVASYGNKGWDGEVEMLSTDIYIFLT----RDGT------QRVKIVE----------NG-G--W  271 (721)
Q Consensus       216 ~~~~~p~~SPDG~-~la~~~~~~~~w~~~~~~~~~~i~~~d~----~~g~------~~~l~~~----------~~-~--~  271 (721)
                      ......+|||||+ +||++..+            ..|.+|++    .+++      .......          .. .  .
T Consensus        46 ~~v~~~~~s~~~~~~l~~~~~d------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (425)
T 1r5m_A           46 DNIVSSTWNPLDESILAYGEKN------------SVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTC  113 (425)
T ss_dssp             SCCSEEEECSSCTTEEEEEETB------------TEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEE
T ss_pred             CceEEEEECCCCCcEEEEecCC------------ceEEEEEEecccCCccccccccccccccccccccccccCCCCceEE
Confidence            4455568999999 99987643            46888888    7777      2222222          11 2  3


Q ss_pred             ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEE
Q 004971          272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIEL  351 (721)
Q Consensus       272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l  351 (721)
                      .+|+||++++++  ...++.+.+|.   ..+.       ....+..+...+..++|+| ++++|+....     +..|.+
T Consensus       114 ~~~s~~~~~l~~--~~~dg~i~i~~---~~~~-------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~-----d~~i~i  175 (425)
T 1r5m_A          114 LAWSHDGNSIVT--GVENGELRLWN---KTGA-------LLNVLNFHRAPIVSVKWNK-DGTHIISMDV-----ENVTIL  175 (425)
T ss_dssp             EEECTTSSEEEE--EETTSCEEEEE---TTSC-------EEEEECCCCSCEEEEEECT-TSSEEEEEET-----TCCEEE
T ss_pred             EEEcCCCCEEEE--EeCCCeEEEEe---CCCC-------eeeeccCCCccEEEEEECC-CCCEEEEEec-----CCeEEE
Confidence            489999987663  33378899995   2222       4555666676788999999 9999887542     345999


Q ss_pred             EECCCCceEEeecccCCCCc---------------ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce-
Q 004971          352 FDLVKNKFIELTRFVSPKTH---------------HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS-  415 (721)
Q Consensus       352 ~dl~tg~~~~l~~~~~~~~~---------------~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-  415 (721)
                      ||+.+++.....  ..+...               +..+.|+|++. ++....++         .+.++++........ 
T Consensus       176 wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g---------~i~~~d~~~~~~~~~~  243 (425)
T 1r5m_A          176 WNVISGTVMQHF--ELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKG---------AIFVYQITEKTPTGKL  243 (425)
T ss_dssp             EETTTTEEEEEE--CCC---------------CCCBSCCEEEETTE-EEEECGGG---------CEEEEETTCSSCSEEE
T ss_pred             EECCCCcEEEEe--eccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCC---------eEEEEEcCCCceeeee
Confidence            999988754332  222222               77889999865 54444333         367777665422211 


Q ss_pred             -ecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEE-Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEE
Q 004971          416 -LFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQ-VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDII  490 (721)
Q Consensus       416 -~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~-l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~  490 (721)
                       ........++|+|+++.|+... ++.|.+||+..++... +.  ...+..+.|+|++ .++..+       .++.+.+|
T Consensus       244 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-------~d~~i~i~  315 (425)
T 1r5m_A          244 IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS-------MDGSVRLW  315 (425)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE-------TTSEEEEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe-------CCCcEEEE
Confidence             1222334579999999988885 7889999998876433 33  4577899999999 666665       46788888


Q ss_pred             EEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc------------------cceEE
Q 004971          491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG------------------YGLHR  552 (721)
Q Consensus       491 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~------------------~~~~~  552 (721)
                      ++....     ....+..+...+..++|+|||++|++.+.   +..|++||+.+++.                  ..+..
T Consensus       316 d~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (425)
T 1r5m_A          316 SLKQNT-----LLALSIVDGVPIFAGRISQDGQKYAVAFM---DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYAS  387 (425)
T ss_dssp             ETTTTE-----EEEEEECTTCCEEEEEECTTSSEEEEEET---TSCEEEEECHHHHC--------------CEECCEEEE
T ss_pred             ECCCCc-----EeEecccCCccEEEEEEcCCCCEEEEEEC---CCeEEEEECCCCccceeeeecccccccCcccchhhhh
Confidence            775432     44555555667888999999999998886   67899999987650                  02555


Q ss_pred             CcCCCc--CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971          553 LTEGPW--SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       553 l~~~~~--~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      +..+..  .+..++|+|||++|+++..++       .|++|++.+
T Consensus       388 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-------~i~iw~~~g  425 (425)
T 1r5m_A          388 YQSSQDNDYIFDLSWNCAGNKISVAYSLQ-------EGSVVAIPG  425 (425)
T ss_dssp             ECCTTCCCCEEEEEECTTSSEEEEEESSS-------CCEEEECCC
T ss_pred             hcCcccCCceEEEEccCCCceEEEEecCc-------eEEEEeecC
Confidence            555543  778999999999999988775       799999864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=1.3e-19  Score=184.04  Aligned_cols=252  Identities=22%  Similarity=0.301  Sum_probs=185.6

Q ss_pred             ceeEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEeCCcEEEEECCC-CceEEEee----cCceeeEEcCCCCeEEE
Q 004971          400 NQLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDG-SNRRQVYF----KNAFSTVWDPVREAVVY  473 (721)
Q Consensus       400 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~-g~~~~l~~----~~~~~~~~spdg~~la~  473 (721)
                      ..++++++.++.. .+.........++|||||++|++...+.|++||+.+ ++...+..    ..+..+.|+|||++|++
T Consensus        22 ~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  101 (297)
T 2ojh_A           22 SSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAI  101 (297)
T ss_dssp             EEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEE
T ss_pred             eeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEE
Confidence            3466666554421 122223334568999999999999999999999999 88777662    45678999999999999


Q ss_pred             EecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC
Q 004971          474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL  553 (721)
Q Consensus       474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l  553 (721)
                      ....     .++...||.++..+.    ....+.... ....++|+|||++|++....++...||.++..+++   ...+
T Consensus       102 ~~~~-----~~~~~~l~~~~~~~~----~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---~~~~  168 (297)
T 2ojh_A          102 SDKV-----EFGKSAIYLLPSTGG----TPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---ETRL  168 (297)
T ss_dssp             EECT-----TTSSCEEEEEETTCC----CCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---EEEC
T ss_pred             EEeC-----CCCcceEEEEECCCC----ceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc---ceEc
Confidence            8731     236789999988764    566666554 46678999999999988877666788888888777   6677


Q ss_pred             cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcC
Q 004971          554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA  633 (721)
Q Consensus       554 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~  633 (721)
                      ......+..+.|+|||+.|++.....    +...||.+++.+++...+..  +...+..+.|+|||++|++.+.+.....
T Consensus       169 ~~~~~~~~~~~~s~dg~~l~~~~~~~----~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~  242 (297)
T 2ojh_A          169 THGEGRNDGPDYSPDGRWIYFNSSRT----GQMQIWRVRVDGSSVERITD--SAYGDWFPHPSPSGDKVVFVSYDADVFD  242 (297)
T ss_dssp             CCSSSCEEEEEECTTSSEEEEEECTT----SSCEEEEEETTSSCEEECCC--CSEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred             ccCCCccccceECCCCCEEEEEecCC----CCccEEEECCCCCCcEEEec--CCcccCCeEECCCCCEEEEEEcCCCCCc
Confidence            76666678899999999999988642    45688888887777766653  4456678999999999999887653110


Q ss_pred             CCCCCCCCCCCCccEEEEEcCCCCeEEec---cCCCCCCCceecCC
Q 004971          634 EPISTPHQYQPYGEIFKIKLDGSDLKRLT---QNSFEDGTPAWGPR  676 (721)
Q Consensus       634 ~~~~~~~~~~~~~~l~~~d~~~~~~~~lt---~~~~~~~~~~~sp~  676 (721)
                            ..+.....|++||+++++.+.+.   .+......++|+|+
T Consensus       243 ------~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd  282 (297)
T 2ojh_A          243 ------HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPD  282 (297)
T ss_dssp             ------CCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTT
T ss_pred             ------ccccCceEEEEEecCCCCceeeeccCCCCcccccceECCC
Confidence                  00011246999999998876655   45566788999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.85  E-value=2e-19  Score=184.50  Aligned_cols=273  Identities=10%  Similarity=0.012  Sum_probs=197.5

Q ss_pred             eCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971          315 VTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST  394 (721)
Q Consensus       315 ~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~  394 (721)
                      +..+...+..++|+| ||++|+...     .+..|.+||+.+++.  +.....+...+....|+|+++.|+..+.++.  
T Consensus         9 ~~~h~~~V~~~~fsp-~~~~l~s~~-----~dg~v~lWd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~--   78 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHP-TEPWVLTTL-----YSGRVELWNYETQVE--VRSIQVTETPVRAGKFIARKNWIIVGSDDFR--   78 (304)
T ss_dssp             EEEECSCEEEEEECS-SSSEEEEEE-----TTSEEEEEETTTTEE--EEEEECCSSCEEEEEEEGGGTEEEEEETTSE--
T ss_pred             ecCCCCceEEEEECC-CCCEEEEEc-----CCCcEEEEECCCCce--eEEeeccCCcEEEEEEeCCCCEEEEECCCCE--
Confidence            444555678899999 999998754     345699999998874  3333445666788999999999998765544  


Q ss_pred             CCCCcceeEEEeccCCCCc--ceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCc-eEEEe---ecCceeeEEcC-
Q 004971          395 REDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSN-RRQVY---FKNAFSTVWDP-  466 (721)
Q Consensus       395 ~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~-~~~l~---~~~~~~~~~sp-  466 (721)
                             +.++++..+...  +.........++|+|++++|+..+ ++.|.+||+.++. .....   ...+..++|+| 
T Consensus        79 -------i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~  151 (304)
T 2ynn_A           79 -------IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK  151 (304)
T ss_dssp             -------EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT
T ss_pred             -------EEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCC
Confidence                   566666554321  111222344579999999988875 7899999998764 33332   45678999999 


Q ss_pred             CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc-cCCCCCcceEEcc--CCCEEEEEEeeCCceeEEEEECC
Q 004971          467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT-TNGKNNAFPSVSP--DGKWIVFRSTRTGYKNLYIMDAE  543 (721)
Q Consensus       467 dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~Sp--Dg~~l~~~s~~~g~~~l~~~d~~  543 (721)
                      ++..|+..+       .++.++||++....     ....+. .+...+....|+|  |+++|+..+.   +..|.+||+.
T Consensus       152 ~~~~l~sgs-------~D~~v~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~---D~~i~iWd~~  216 (304)
T 2ynn_A          152 DPSTFASGC-------LDRTVKVWSLGQST-----PNFTLTTGQERGVNYVDYYPLPDKPYMITASD---DLTIKIWDYQ  216 (304)
T ss_dssp             CTTEEEEEE-------TTSEEEEEETTCSS-----CSEEEECCCTTCEEEEEECCSTTCCEEEEEET---TSEEEEEETT
T ss_pred             CCCEEEEEe-------CCCeEEEEECCCCC-----ccceeccCCcCcEEEEEEEEcCCCCEEEEEcC---CCeEEEEeCC
Confidence            567787776       57899999875433     223333 2334455667775  7889998887   7899999999


Q ss_pred             CCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEE-
Q 004971          544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI-  622 (721)
Q Consensus       544 ~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l-  622 (721)
                      +++.  +..+..+...+..++|+|+++.|+.++.++       .|.+||+.+++..+.... +...+..++|+|+|+.+ 
T Consensus       217 ~~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg-------~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  286 (304)
T 2ynn_A          217 TKSC--VATLEGHMSNVSFAVFHPTLPIIISGSEDG-------TLKIWNSSTYKVEKTLNV-GLERSWCIATHPTGRKNY  286 (304)
T ss_dssp             TTEE--EEEEECCSSCEEEEEECSSSSEEEEEETTS-------CEEEEETTTCCEEEEECC-SSSSEEEEEECTTCGGGC
T ss_pred             CCcc--ceeeCCCCCCEEEEEECCCCCEEEEEcCCC-------eEEEEECCCCceeeeccC-CCccEEEEEECCCCCceE
Confidence            8875  666777777788999999999999988875       899999999887765543 45667789999998642 


Q ss_pred             EEEEecC
Q 004971          623 VFTSDYG  629 (721)
Q Consensus       623 ~~~~~~~  629 (721)
                      +..+.++
T Consensus       287 ~asg~~~  293 (304)
T 2ynn_A          287 IASGFDN  293 (304)
T ss_dssp             EEEEETT
T ss_pred             EEEecCC
Confidence            3344444

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.85  E-value=1.7e-19  Score=186.31  Aligned_cols=285  Identities=12%  Similarity=0.062  Sum_probs=201.9

Q ss_pred             EeCCCCCcccCceeecCCC-CEEEEEEecCCCCeeeEEEEECCCCce---EEeecccCCCCcccCcEEcCCCCEEEEEEe
Q 004971          314 RVTPPGLHAFTPATSPGNN-KFIAVATRRPTSSYRHIELFDLVKNKF---IELTRFVSPKTHHLNPFISPDSSRVGYHKC  389 (721)
Q Consensus       314 ~~~~~~~~~~~~~~sp~dG-~~la~~~~~~g~~~~~l~l~dl~tg~~---~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~  389 (721)
                      .+..|...+..++|+| ++ +.|+..+     .+..|++||+.+...   ..+..+..|...+...+|+|||++|+..+.
T Consensus        12 ~l~gH~~~V~~l~~~~-~~~~~l~s~s-----~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~   85 (319)
T 3frx_A           12 TLEGHNGWVTSLATSA-GQPNLLLSAS-----RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW   85 (319)
T ss_dssp             EECCCSSCEEEEEECS-SCTTEEEEEE-----TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEccccceEEEEEccC-CCccEEEEec-----CCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence            3556666778899999 76 6666543     455699999864321   234445567777888999999999998766


Q ss_pred             eCCCCCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEE
Q 004971          390 RGGSTREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVW  464 (721)
Q Consensus       390 ~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~  464 (721)
                      ++.         +.++++..+..  .+.........++|+|+++.|+..+ ++.|.+||+.+.....+.  ...+..+.|
T Consensus        86 D~~---------v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~  156 (319)
T 3frx_A           86 DKT---------LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRV  156 (319)
T ss_dssp             TSE---------EEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEE
T ss_pred             CCE---------EEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEE
Confidence            554         56666655421  1111223344578999999988885 788999999876555554  456778889


Q ss_pred             cCCC------CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEE
Q 004971          465 DPVR------EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY  538 (721)
Q Consensus       465 spdg------~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~  538 (721)
                      +|.+      ..|+..+       .++.+++|++....     ....+..+...+..++|+|||++|+..+.   +..|+
T Consensus       157 ~~~~~~~~~~~~l~s~~-------~d~~i~~wd~~~~~-----~~~~~~~h~~~v~~~~~sp~g~~l~s~~~---dg~i~  221 (319)
T 3frx_A          157 VPNEKADDDSVTIISAG-------NDKMVKAWNLNQFQ-----IEADFIGHNSNINTLTASPDGTLIASAGK---DGEIM  221 (319)
T ss_dssp             CCC------CCEEEEEE-------TTSCEEEEETTTTE-----EEEEECCCCSCEEEEEECTTSSEEEEEET---TCEEE
T ss_pred             ccCCCCCCCccEEEEEe-------CCCEEEEEECCcch-----hheeecCCCCcEEEEEEcCCCCEEEEEeC---CCeEE
Confidence            8854      4666665       57889999875422     44556667778888999999999998887   78999


Q ss_pred             EEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC-------CCCCcC
Q 004971          539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG-------SAGRAN  611 (721)
Q Consensus       539 ~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-------~~~~~~  611 (721)
                      +||+.+++.  +..+.. ...+..++|+|||.+|+.+...        .+.+|+++.+.........       +...+.
T Consensus       222 iwd~~~~~~--~~~~~~-~~~v~~~~~sp~~~~la~~~~~--------~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~  290 (319)
T 3frx_A          222 LWNLAAKKA--MYTLSA-QDEVFSLAFSPNRYWLAAATAT--------GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV  290 (319)
T ss_dssp             EEETTTTEE--EEEEEC-CSCEEEEEECSSSSEEEEEETT--------EEEEEEETTEEEEEEECCCCTTCCGGGCCCEE
T ss_pred             EEECCCCcE--EEEecC-CCcEEEEEEcCCCCEEEEEcCC--------CcEEEEeCcCeeeeccCccccccccCcCccee
Confidence            999998874  444443 3457889999999999887755        5888888876543332210       123345


Q ss_pred             CeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971          612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       612 ~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~  656 (721)
                      .++|||||++|+..+.++.                 |++||+.++
T Consensus       291 ~~~~spdg~~l~sg~~Dg~-----------------i~vWd~~t~  318 (319)
T 3frx_A          291 SLAWSADGQTLFAGYTDNV-----------------IRVWQVMTA  318 (319)
T ss_dssp             EEEECTTSSEEEEEETTSC-----------------EEEEEEEEC
T ss_pred             EEEECCCCCEEEEeecCce-----------------EEEEEEeec
Confidence            7899999999998777653                 888887654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.85  E-value=5.8e-20  Score=197.20  Aligned_cols=289  Identities=12%  Similarity=0.105  Sum_probs=198.9

Q ss_pred             cccCceeecCCCCEEEEEEecCC------CCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971          321 HAFTPATSPGNNKFIAVATRRPT------SSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST  394 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g------~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~  394 (721)
                      .+..++|+| ||+.+++.....+      ..+..|++||+.+++.........+...+..++|+|+++.|+....++.  
T Consensus        14 ~v~~~~~sp-~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--   90 (416)
T 2pm9_A           14 RTATFAWSH-DKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS--   90 (416)
T ss_dssp             ESCBCCBCS-SSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC--
T ss_pred             hcceEeeCC-CCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe--
Confidence            346788999 9984444333323      4567799999998753222222235667888999999999988766554  


Q ss_pred             CCCCcceeEEEeccC---CCCccee---cccCCCCceeCcC-CCEEEEEe-CCcEEEEECCCCc------e-EEE---e-
Q 004971          395 REDGNNQLLLENIKS---PLPDISL---FRFDGSFPSFSPK-GDRIAFVE-FPGVYVVNSDGSN------R-RQV---Y-  455 (721)
Q Consensus       395 ~~~~~~~l~~~~~~~---~~~~~~~---~~~~~~~~~~SpD-G~~la~~~-~~~l~v~d~~~g~------~-~~l---~-  455 (721)
                             +.++++..   +...+..   .......++|+|+ ++.|+..+ ++.|++||+.+++      . ..+   . 
T Consensus        91 -------v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  163 (416)
T 2pm9_A           91 -------LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS  163 (416)
T ss_dssp             -------EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC
T ss_pred             -------EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccC
Confidence                   55566554   1112221   2234456899998 77777774 7899999998775      2 122   1 


Q ss_pred             -ecCceeeEEcCC-CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC------CCCCcceEEccCCC-EEE
Q 004971          456 -FKNAFSTVWDPV-REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN------GKNNAFPSVSPDGK-WIV  526 (721)
Q Consensus       456 -~~~~~~~~~spd-g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~SpDg~-~l~  526 (721)
                       ...+..+.|+|+ +..|+..+       .++.+.+|++....     ....+..+      ...+..++|+|++. .|+
T Consensus       164 ~~~~v~~~~~~~~~~~~l~~~~-------~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  231 (416)
T 2pm9_A          164 SVDEVISLAWNQSLAHVFASAG-------SSNFASIWDLKAKK-----EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA  231 (416)
T ss_dssp             SSCCCCEEEECSSCTTEEEEES-------SSSCEEEEETTTTE-----EEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred             CCCCeeEEEeCCCCCcEEEEEc-------CCCCEEEEECCCCC-----cceEEeccccccccCCceEEEEECCCCCCEEE
Confidence             456789999999 55565554       56888998876532     34444443      45677899999985 666


Q ss_pred             EEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEcc-CCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec
Q 004971          527 FRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSP-DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS  604 (721)
Q Consensus       527 ~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~  604 (721)
                      ..+.......|++||+.++.. ....+. .+...+..++|+| |++.|+.+..++       .|++||+.+++.......
T Consensus       232 ~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg-------~v~~wd~~~~~~~~~~~~  303 (416)
T 2pm9_A          232 TATGSDNDPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN-------TVLLWNPESAEQLSQFPA  303 (416)
T ss_dssp             EEECCSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS-------EEEEECSSSCCEEEEEEC
T ss_pred             EEECCCCCceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCCC-------CEEEeeCCCCccceeecC
Confidence            666522223899999987631 144444 5666778999999 899999888775       899999998876655543


Q ss_pred             CCCCCcCCeEECCCC-CEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971          605 GSAGRANHPYFSPDG-KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       605 ~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  657 (721)
                       +...+..++|+||| ++|+..+.++                 .|.+|++.++.
T Consensus       304 -~~~~v~~~~~s~~~~~~l~s~~~d~-----------------~i~iw~~~~~~  339 (416)
T 2pm9_A          304 -RGNWCFKTKFAPEAPDLFACASFDN-----------------KIEVQTLQNLT  339 (416)
T ss_dssp             -SSSCCCCEEECTTCTTEEEECCSSS-----------------EEEEEESCCCC
T ss_pred             -CCCceEEEEECCCCCCEEEEEecCC-----------------cEEEEEccCCC
Confidence             67788999999999 6766655543                 48999987764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.85  E-value=2.8e-19  Score=188.46  Aligned_cols=296  Identities=13%  Similarity=0.090  Sum_probs=190.5

Q ss_pred             CCCcccCceeecCCCCEEEEEEecCC--CCeeeEEEEECCCCceE------Eee--cccCCCCcccCcEEcCCCCEEEEE
Q 004971          318 PGLHAFTPATSPGNNKFIAVATRRPT--SSYRHIELFDLVKNKFI------ELT--RFVSPKTHHLNPFISPDSSRVGYH  387 (721)
Q Consensus       318 ~~~~~~~~~~sp~dG~~la~~~~~~g--~~~~~l~l~dl~tg~~~------~l~--~~~~~~~~~~~~~~Spdg~~l~~~  387 (721)
                      .++.+..++|+| ||+.|+.......  +-+..|++|++..+...      ...  .+..+...+  .+++++++.++..
T Consensus        13 ~g~PV~sv~fs~-dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v--~s~~~~~~~~~~g   89 (365)
T 4h5i_A           13 VGYPAYGAKFLN-NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSP--TAIDASKGIILVG   89 (365)
T ss_dssp             CSSCEEEEEEEE-TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCC--CEEEEETTEEEEE
T ss_pred             CCCCEEEEEEeC-CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCce--EEEEeCCCEEEEE
Confidence            355678899999 9998876432111  11335899988765321      111  112222223  4566778777764


Q ss_pred             EeeCCCC----CCCCcceeEEEeccCCCCcceecc-----------cCCCCceeCcCCCEEEEEe---CCcEEEEECCCC
Q 004971          388 KCRGGST----REDGNNQLLLENIKSPLPDISLFR-----------FDGSFPSFSPKGDRIAFVE---FPGVYVVNSDGS  449 (721)
Q Consensus       388 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g  449 (721)
                      ...+...    ..+  ..+.++++......+....           ...+.++|||||+++++++   ++.|++||+.++
T Consensus        90 ~~~~~~~l~s~~~d--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~  167 (365)
T 4h5i_A           90 CNENSTKITQGKGN--KHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL  167 (365)
T ss_dssp             CCCCHHHHHHTSCC--CCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT
T ss_pred             ECCCccEEEEecCC--CcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC
Confidence            4332211    111  1233333322211111100           0112468999999998773   578999999988


Q ss_pred             ceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc--ccCCCCCcceEEccCCCEE
Q 004971          450 NRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL--TTNGKNNAFPSVSPDGKWI  525 (721)
Q Consensus       450 ~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~SpDg~~l  525 (721)
                      +.....  ...+..++|||||++|+..+        ++.+.+|......     .....  ..+...+..++|+|||+.+
T Consensus       168 ~~~~~~~~~~~V~~v~fspdg~~l~s~s--------~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~v~fspdg~~l  234 (365)
T 4h5i_A          168 TEKFEIETRGEVKDLHFSTDGKVVAYIT--------GSSLEVISTVTGS-----CIARKTDFDKNWSLSKINFIADDTVL  234 (365)
T ss_dssp             EEEEEEECSSCCCEEEECTTSSEEEEEC--------SSCEEEEETTTCC-----EEEEECCCCTTEEEEEEEEEETTEEE
T ss_pred             cEEEEeCCCCceEEEEEccCCceEEecc--------ceeEEEEEeccCc-----ceeeeecCCCCCCEEEEEEcCCCCEE
Confidence            765433  56788999999999999886        2445555433222     22222  2233456778999999999


Q ss_pred             EEEEeeCC-ceeEEEEECCCCcccc--eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971          526 VFRSTRTG-YKNLYIMDAEGGEGYG--LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI  602 (721)
Q Consensus       526 ~~~s~~~g-~~~l~~~d~~~g~~~~--~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  602 (721)
                      +..+...+ ...++.|++..+....  ...+..+...+..++|||||++||.++.+.       .|++||+.++++....
T Consensus       235 ~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~-------~V~iwd~~~~~~~~~~  307 (365)
T 4h5i_A          235 IAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN-------SIALVKLKDLSMSKIF  307 (365)
T ss_dssp             EEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS-------CEEEEETTTTEEEEEE
T ss_pred             EEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC-------EEEEEECCCCcEEEEe
Confidence            98876432 3368888887654311  234455566678999999999999999885       8999999998766544


Q ss_pred             ecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971          603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       603 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                      ..+|...+..++|||||++|+..+.+..                 |.+||+..
T Consensus       308 ~~gH~~~V~~v~fSpdg~~laS~S~D~t-----------------vrvw~ip~  343 (365)
T 4h5i_A          308 KQAHSFAITEVTISPDSTYVASVSAANT-----------------IHIIKLPL  343 (365)
T ss_dssp             TTSSSSCEEEEEECTTSCEEEEEETTSE-----------------EEEEECCT
T ss_pred             cCcccCCEEEEEECCCCCEEEEEeCCCe-----------------EEEEEcCC
Confidence            3457888999999999999998888764                 88888754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.85  E-value=2.3e-19  Score=192.89  Aligned_cols=335  Identities=10%  Similarity=-0.051  Sum_probs=218.4

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeee
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTD  250 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~  250 (721)
                      +|  ||++|+..+..+          .++..+..+++...............|+|||++|+++..+            ..
T Consensus        65 s~--~g~~l~~~~~d~----------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------------g~  120 (420)
T 3vl1_A           65 EK--VGSHLYKARLDG----------HDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTE------------GD  120 (420)
T ss_dssp             EE--EETTEEEEEETT----------EEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETT------------SC
T ss_pred             ee--cCCeEEEEEcCC----------cEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECC------------CC
Confidence            99  999888877653          6666676665544332222333444789999999997643            46


Q ss_pred             EEEEEcCCCceeEEEe-ccCC--cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCcee
Q 004971          251 IYIFLTRDGTQRVKIV-ENGG--WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPAT  327 (721)
Q Consensus       251 i~~~d~~~g~~~~l~~-~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (721)
                      |.+|++.+++...... +...  ..+|+||++++++  ...++.+.+|++....         ....+..+...+..++|
T Consensus       121 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s--~s~d~~i~iwd~~~~~---------~~~~~~~h~~~v~~~~~  189 (420)
T 3vl1_A          121 IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALIS--SSQDMQLKIWSVKDGS---------NPRTLIGHRATVTDIAI  189 (420)
T ss_dssp             EEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEE--EETTSEEEEEETTTCC---------CCEEEECCSSCEEEEEE
T ss_pred             EEEEeCCCcceeeecccccCccEEEEECCCCCEEEE--EeCCCeEEEEeCCCCc---------CceEEcCCCCcEEEEEE
Confidence            8899998877655532 2222  4589999987664  3337889999654332         45556667777889999


Q ss_pred             ecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc-cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEe
Q 004971          328 SPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF-VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLEN  406 (721)
Q Consensus       328 sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~-~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~  406 (721)
                      +| +|++|+...     .+..|.+||+.+++....... ..+...+....|.|++...                      
T Consensus       190 ~~-~~~~l~s~~-----~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------------------  241 (420)
T 3vl1_A          190 ID-RGRNVLSAS-----LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ----------------------  241 (420)
T ss_dssp             ET-TTTEEEEEE-----TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS----------------------
T ss_pred             cC-CCCEEEEEc-----CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce----------------------
Confidence            99 999988754     334599999998874433211 1122222223333222110                      


Q ss_pred             ccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe----ecCceeeEEcCCCC-eEEEEecCCCC
Q 004971          407 IKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVRE-AVVYTSGGPEF  480 (721)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~-~la~~~~~~~~  480 (721)
                            ...........++|+|+|+.|+... ++.|.+||+.+++.....    ...+..+.|+|+++ .|+..+     
T Consensus       242 ------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~-----  310 (420)
T 3vl1_A          242 ------LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY-----  310 (420)
T ss_dssp             ------CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE-----
T ss_pred             ------eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe-----
Confidence                  0011112245679999999988875 778999999887743332    34678999999999 676665     


Q ss_pred             CCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc-------ceEEC
Q 004971          481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY-------GLHRL  553 (721)
Q Consensus       481 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~-------~~~~l  553 (721)
                        .++.+.+|++.....    ....+..+........++|++++|+..+.   +..|++|++...+..       ....+
T Consensus       311 --~dg~i~vwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~l~s~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~  381 (420)
T 3vl1_A          311 --ENGMLAQWDLRSPEC----PVGEFLINEGTPINNVYFAAGALFVSSGF---DTSIKLDIISDPESERPAIEFETPTFL  381 (420)
T ss_dssp             --TTSEEEEEETTCTTS----CSEEEEESTTSCEEEEEEETTEEEEEETT---TEEEEEEEECCTTCCSCEECTTSCEEE
T ss_pred             --CCCeEEEEEcCCCcC----chhhhhccCCCCceEEEeCCCCEEEEecC---CccEEEEeccCCCCCccceeccCccEE
Confidence              568899998765432    34555553323333446678888887765   788999998764221       02223


Q ss_pred             cCCCcCceeeEEccCCC---EEEEEEccCCCCCCceeEEEEecCC
Q 004971          554 TEGPWSDTMCNWSPDGE---WIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       554 ~~~~~~~~~~~~SpDG~---~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      ..+...+..++|+|||+   .|+.....+       .+.+|++..
T Consensus       382 ~~~~~~v~~~~~s~~~~~~g~l~a~g~~g-------~~~~~~~~~  419 (420)
T 3vl1_A          382 VSNDDAVSQFCYVSDDESNGEVLEVGKNN-------FCALYNLSN  419 (420)
T ss_dssp             CCSSCCCCEEEEECCSSSSCEEEEEETTT-------EEEEEESCC
T ss_pred             ccCCcceEEEEEccCCCCcceEEEEcCCc-------eEEEEeccC
Confidence            33445678899999999   777777664       788888754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.84  E-value=4.9e-19  Score=188.75  Aligned_cols=273  Identities=11%  Similarity=0.011  Sum_probs=190.5

Q ss_pred             CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeeccc----------------CCCCcccCcEEcCCC
Q 004971          318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFV----------------SPKTHHLNPFISPDS  381 (721)
Q Consensus       318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~----------------~~~~~~~~~~~Spdg  381 (721)
                      +...+..++||| ||++|+...      +..+.+|++.+++........                .....+..++|+|||
T Consensus        63 h~~~V~~v~fsp-dg~~la~g~------~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg  135 (393)
T 1erj_A           63 HTSVVCCVKFSN-DGEYLATGC------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG  135 (393)
T ss_dssp             CSSCCCEEEECT-TSSEEEEEC------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS
T ss_pred             CCCEEEEEEECC-CCCEEEEEc------CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC
Confidence            444667899999 999998743      234899999988743221110                011135678999999


Q ss_pred             CEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--ceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--e
Q 004971          382 SRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--F  456 (721)
Q Consensus       382 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~  456 (721)
                      +.|+....++.         +.++++......  +.........++|+|+|++|+..+ ++.|.+||+.+++.....  .
T Consensus       136 ~~l~s~~~d~~---------i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~  206 (393)
T 1erj_A          136 KFLATGAEDRL---------IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE  206 (393)
T ss_dssp             SEEEEEETTSC---------EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred             CEEEEEcCCCe---------EEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC
Confidence            99998766554         556666544211  111222334579999999998885 788999999988754433  4


Q ss_pred             cCceeeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc-------ccCCCCCcceEEccCCCEEEEE
Q 004971          457 KNAFSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL-------TTNGKNNAFPSVSPDGKWIVFR  528 (721)
Q Consensus       457 ~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~SpDg~~l~~~  528 (721)
                      ..+..++|+| +|+.|+..+       .++.++||++....     ....+       ..+...+..++|+|||++|+..
T Consensus       207 ~~v~~~~~~~~~~~~l~~~s-------~d~~v~iwd~~~~~-----~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~  274 (393)
T 1erj_A          207 DGVTTVAVSPGDGKYIAAGS-------LDRAVRVWDSETGF-----LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG  274 (393)
T ss_dssp             SCEEEEEECSTTCCEEEEEE-------TTSCEEEEETTTCC-----EEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEc-------CCCcEEEEECCCCc-----EEEeecccccCCCCCCCCEEEEEECCCCCEEEEE
Confidence            5678899999 899988886       57889999865432     23333       3344567789999999999988


Q ss_pred             EeeCCceeEEEEECCCCccc----------ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971          529 STRTGYKNLYIMDAEGGEGY----------GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL  598 (721)
Q Consensus       529 s~~~g~~~l~~~d~~~g~~~----------~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~  598 (721)
                      +.   +..|.+||+.+....          ....+..+...+..++|+|++++|+.++.++       .|++||+.+++.
T Consensus       275 s~---d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~-------~v~iwd~~~~~~  344 (393)
T 1erj_A          275 SL---DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR-------GVLFWDKKSGNP  344 (393)
T ss_dssp             ET---TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS-------EEEEEETTTCCE
T ss_pred             eC---CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC-------eEEEEECCCCeE
Confidence            86   788999998764310          0223334555677899999999999988875       899999999887


Q ss_pred             EEeeecCCCCCcCCeEECC------CCCEEEEEEecC
Q 004971          599 RKLIQSGSAGRANHPYFSP------DGKSIVFTSDYG  629 (721)
Q Consensus       599 ~~l~~~~~~~~~~~~~~Sp------DG~~l~~~~~~~  629 (721)
                      ..... +|...+..++|++      ++++|+..+.++
T Consensus       345 ~~~l~-~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg  380 (393)
T 1erj_A          345 LLMLQ-GHRNSVISVAVANGSSLGPEYNVFATGSGDC  380 (393)
T ss_dssp             EEEEE-CCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred             EEEEC-CCCCCEEEEEecCCcCcCCCCCEEEEECCCC
Confidence            65554 3777788888875      688888777665

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.84  E-value=3.9e-19  Score=185.41  Aligned_cols=285  Identities=11%  Similarity=0.012  Sum_probs=187.3

Q ss_pred             CcccCceeecCCCCEEEEEEecCCC-CeeeEEEEECCCCceE--EeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCC
Q 004971          320 LHAFTPATSPGNNKFIAVATRRPTS-SYRHIELFDLVKNKFI--ELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRE  396 (721)
Q Consensus       320 ~~~~~~~~sp~dG~~la~~~~~~g~-~~~~l~l~dl~tg~~~--~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~  396 (721)
                      ..+..++||| ||+.|+..+..... -+..+++|+.......  .......+...+..++|+||+ +|+..+.++.    
T Consensus        31 ~~v~~~~fs~-dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~----  104 (344)
T 4gqb_B           31 RQLEAARYRS-DGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA----  104 (344)
T ss_dssp             SEEEEEEECT-TSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE----
T ss_pred             CCEEEEEECC-CCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE----
Confidence            3567889999 99988865532211 1233444432211100  000001123446789999996 5666554443    


Q ss_pred             CCcceeEEEeccCCCCccee------cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcC
Q 004971          397 DGNNQLLLENIKSPLPDISL------FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDP  466 (721)
Q Consensus       397 ~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~sp  466 (721)
                           +.++++..+......      .......++|+|||++|+..+ ++.|.+||+.+++.....   ...+..+.|+|
T Consensus       105 -----v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~  179 (344)
T 4gqb_B          105 -----VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP  179 (344)
T ss_dssp             -----EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred             -----EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence                 556666554322111      122345679999999999885 778999999988765443   45778999999


Q ss_pred             CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC--CCCCcceEEccCCC-EEEEEEeeCCceeEEEEECC
Q 004971          467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN--GKNNAFPSVSPDGK-WIVFRSTRTGYKNLYIMDAE  543 (721)
Q Consensus       467 dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~SpDg~-~l~~~s~~~g~~~l~~~d~~  543 (721)
                      ++..++++.      ..++.++||++....     ....+...  ......++|+|++. .|+..+.   +..|++||+.
T Consensus       180 ~~~~~l~s~------s~D~~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~---dg~v~~wd~~  245 (344)
T 4gqb_B          180 HKDSVFLSC------SEDNRILLWDTRCPK-----PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE---NGTVSLVDTK  245 (344)
T ss_dssp             SCTTEEEEE------ETTSCEEEEETTSSS-----CEEECC----CCCEEEEEECSSCTTEEEEEET---TSEEEEEESC
T ss_pred             CCCCceeee------ccccccccccccccc-----eeeeeecceeeccceeeeecCCCCcceEEecc---CCcEEEEECC
Confidence            997655443      257899999876543     34444332  23466789999654 5565665   6789999999


Q ss_pred             CCcccceEECcCCCcCceeeEEccCCC-EEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEE
Q 004971          544 GGEGYGLHRLTEGPWSDTMCNWSPDGE-WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI  622 (721)
Q Consensus       544 ~g~~~~~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l  622 (721)
                      +++.  +..+..+...+..++|+|||. .|+.++.++       .|++||+.+++..++.  +|...+..++|||||+.|
T Consensus       246 ~~~~--~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~-------~i~vwd~~~~~~~~~~--~H~~~V~~v~~sp~~~~l  314 (344)
T 4gqb_B          246 STSC--VLSSAVHSQCVTGLVFSPHSVPFLASLSEDC-------SLAVLDSSLSELFRSQ--AHRDFVRDATWSPLNHSL  314 (344)
T ss_dssp             C--C--CEEEECCSSCEEEEEECSSSSCCEEEEETTS-------CEEEECTTCCEEEEEC--CCSSCEEEEEECSSSTTE
T ss_pred             CCcE--EEEEcCCCCCEEEEEEccCCCeEEEEEeCCC-------eEEEEECCCCcEEEEc--CCCCCEEEEEEeCCCCeE
Confidence            8875  667777777788999999985 566677664       8999999998766543  478889999999999876


Q ss_pred             EEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971          623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~  656 (721)
                      +.+...++                .|.+|++.+.
T Consensus       315 las~s~D~----------------~v~~w~v~~~  332 (344)
T 4gqb_B          315 LTTVGWDH----------------QVVHHVVPTE  332 (344)
T ss_dssp             EEEEETTS----------------CEEEEECCC-
T ss_pred             EEEEcCCC----------------eEEEEECCCC
Confidence            65544333                3889988764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.84  E-value=8.2e-19  Score=180.58  Aligned_cols=272  Identities=15%  Similarity=0.141  Sum_probs=195.4

Q ss_pred             EeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971          314 RVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS  393 (721)
Q Consensus       314 ~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~  393 (721)
                      .+..+...+..++|+| +|++|+...     .++.|.+|++.+++....  ...+...+..++|+|+++.|+....++. 
T Consensus        18 ~~~gh~~~v~~~~~s~-~~~~l~s~~-----~dg~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d~~-   88 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSP-NGEWLASSS-----ADKLIKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKT-   88 (312)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEE-----TTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSE-
T ss_pred             EEcccCCcEEEEEECC-CCCEEEEee-----CCCeEEEEeCCCcccchh--hccCCCceEEEEEcCCCCEEEEECCCCE-
Confidence            3445666778899999 999988854     344599999998875433  3456677888999999999988765544 


Q ss_pred             CCCCCcceeEEEeccCCCCc--ceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCC
Q 004971          394 TREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPV  467 (721)
Q Consensus       394 ~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spd  467 (721)
                              +.++++..+...  +.........+.|+|+++.|+..+ ++.|.+||+.+++.....   ...+..+.|+|+
T Consensus        89 --------i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (312)
T 4ery_A           89 --------LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD  160 (312)
T ss_dssp             --------EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             --------EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence                    566666554211  111122234568999999998885 788999999988754433   456788999999


Q ss_pred             CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971          468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE  546 (721)
Q Consensus       468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~  546 (721)
                      ++.|+..+       .++.+.+|++....     ....+.. +......++|+|+|++|+..+.   +..|++||+.+++
T Consensus       161 ~~~l~~~~-------~d~~i~~wd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~  225 (312)
T 4ery_A          161 GSLIVSSS-------YDGLCRIWDTASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATL---DNTLKLWDYSKGK  225 (312)
T ss_dssp             SSEEEEEE-------TTSCEEEEETTTCC-----EEEEECCSSCCCEEEEEECTTSSEEEEEET---TTEEEEEETTTTE
T ss_pred             CCEEEEEe-------CCCcEEEEECCCCc-----eeeEEeccCCCceEEEEECCCCCEEEEEcC---CCeEEEEECCCCc
Confidence            99998886       56889999875432     3333333 3345667899999999998886   7789999999887


Q ss_pred             ccceEECcCCCcC--ceeeEEc-cCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEE
Q 004971          547 GYGLHRLTEGPWS--DTMCNWS-PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIV  623 (721)
Q Consensus       547 ~~~~~~l~~~~~~--~~~~~~S-pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~  623 (721)
                      .  +..+..+...  .....++ +++++|+.++.++       .|++||+.+++....... +...+..++|+|+++.|+
T Consensus       226 ~--~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-------~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~  295 (312)
T 4ery_A          226 C--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN-------LVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIA  295 (312)
T ss_dssp             E--EEEECSSCCSSSCCCEEEECSSSCEEEECCTTS-------CEEEEETTTCCEEEEECC-CSSCEEEEEECSSSSEEE
T ss_pred             E--EEEEEecCCceEEEEEEEEeCCCcEEEEECCCC-------EEEEEECCCchhhhhhhc-cCCcEEEEeecCcCCceE
Confidence            4  4444433222  1223444 6788888777664       899999999887665543 677788999999999998


Q ss_pred             EEEe
Q 004971          624 FTSD  627 (721)
Q Consensus       624 ~~~~  627 (721)
                      ..+.
T Consensus       296 s~~~  299 (312)
T 4ery_A          296 SAAL  299 (312)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            8774

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.83  E-value=1.4e-18  Score=187.62  Aligned_cols=325  Identities=12%  Similarity=0.063  Sum_probs=209.5

Q ss_pred             cccCCCCCEEEEEecCCCCCCcc--ccee--eeeEEEEEcCCCceeEEE--eccC--CcceeccCCeEEEEeccCCCCcE
Q 004971          221 PAVSPSGKYTAVASYGNKGWDGE--VEML--STDIYIFLTRDGTQRVKI--VENG--GWPCWVDESTLFFHRKSEEDDWI  292 (721)
Q Consensus       221 p~~SPDG~~la~~~~~~~~w~~~--~~~~--~~~i~~~d~~~g~~~~l~--~~~~--~~~~ws~dg~l~~~~~~~~~g~~  292 (721)
                      |.|+|+++.++++......-...  .+..  ...||.++..++....+.  ....  ...+|+|+++++++  ...++.+
T Consensus        69 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--~~~~~~i  146 (433)
T 3bws_A           69 PVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIP--LLEDEGM  146 (433)
T ss_dssp             ECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEE--BTTSSSE
T ss_pred             eeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEE--eCCCCeE
Confidence            34888888777654322100000  0001  127888888766544433  2222  25689998778774  3336778


Q ss_pred             EEEEEecCCCcceeccccceEEeC------CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeeccc
Q 004971          293 SVYKVILPQTGLVSTESVSIQRVT------PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFV  366 (721)
Q Consensus       293 ~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~  366 (721)
                      .+|...  . +       +.....      .+...+..++|+| +|+.++...     .+..|++||+++++.....  .
T Consensus       147 ~~~d~~--~-g-------~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~-----~d~~v~~~d~~~~~~~~~~--~  208 (433)
T 3bws_A          147 DVLDIN--S-G-------QTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQM-----QANAVHVFDLKTLAYKATV--D  208 (433)
T ss_dssp             EEEETT--T-C-------CEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEG-----GGTEEEEEETTTCCEEEEE--E
T ss_pred             EEEECC--C-C-------eEeeecCcccccccCCceeEEEEcC-CCEEEEEEC-----CCCEEEEEECCCceEEEEE--c
Confidence            888432  2 1       233322      2333566788999 987655532     3456999999988743322  3


Q ss_pred             CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec--ccCCCCceeCcCCCEEEEEe-------
Q 004971          367 SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF--RFDGSFPSFSPKGDRIAFVE-------  437 (721)
Q Consensus       367 ~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~SpDG~~la~~~-------  437 (721)
                      .+...+..++|+|+|+.+++.....        ..++++++..+.. +...  ......++|+|||+.|++..       
T Consensus       209 ~~~~~~~~~~~~~~~~~l~~~~~~~--------~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~  279 (433)
T 3bws_A          209 LTGKWSKILLYDPIRDLVYCSNWIS--------EDISVIDRKTKLE-IRKTDKIGLPRGLLLSKDGKELYIAQFSASNQE  279 (433)
T ss_dssp             CSSSSEEEEEEETTTTEEEEEETTT--------TEEEEEETTTTEE-EEECCCCSEEEEEEECTTSSEEEEEEEESCTTC
T ss_pred             CCCCCeeEEEEcCCCCEEEEEecCC--------CcEEEEECCCCcE-EEEecCCCCceEEEEcCCCCEEEEEECCCCccc
Confidence            3456677899999999987765333        2477777755421 1111  11234578999999988874       


Q ss_pred             --CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCC
Q 004971          438 --FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN  513 (721)
Q Consensus       438 --~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~  513 (721)
                        ++.|++||+.+++.....  ...+..+.|+|+|+.++++..      .++.+.+|+++...     ....+. .....
T Consensus       280 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~------~~~~v~v~d~~~~~-----~~~~~~-~~~~~  347 (433)
T 3bws_A          280 SGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDM------CCSKIEVYDLKEKK-----VQKSIP-VFDKP  347 (433)
T ss_dssp             SCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEET------TTTEEEEEETTTTE-----EEEEEE-CSSSE
T ss_pred             cCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEec------CCCEEEEEECCCCc-----EEEEec-CCCCC
Confidence              458999999988765444  557788999999999988862      46777777765321     333333 44467


Q ss_pred             cceEEccCCCEEEEEEeeCC------------ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCC
Q 004971          514 AFPSVSPDGKWIVFRSTRTG------------YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP  581 (721)
Q Consensus       514 ~~~~~SpDg~~l~~~s~~~g------------~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~  581 (721)
                      ..++|+|||++|++.....+            +..|++||+.+++.  +..+.. ...+..++|+|||++|+++....  
T Consensus       348 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~--~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d--  422 (433)
T 3bws_A          348 NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV--KEFWEA-GNQPTGLDVSPDNRYLVISDFLD--  422 (433)
T ss_dssp             EEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE--EEEEEC-SSSEEEEEECTTSCEEEEEETTT--
T ss_pred             CeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE--EEEecC-CCCCceEEEcCCCCEEEEEECCC--
Confidence            78999999999998876432            24899999998874  333333 34567899999999998887522  


Q ss_pred             CCCceeEEEEecCC
Q 004971          582 GSGSFEMYLIHPNG  595 (721)
Q Consensus       582 ~~~~~~i~~~d~~~  595 (721)
                          ..|++|++++
T Consensus       423 ----~~i~v~~~~~  432 (433)
T 3bws_A          423 ----HQIRVYRRDG  432 (433)
T ss_dssp             ----TEEEEEEETT
T ss_pred             ----CeEEEEEecC
Confidence                2899998764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.83  E-value=1e-18  Score=188.76  Aligned_cols=291  Identities=10%  Similarity=0.059  Sum_probs=193.7

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEee---cccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCC
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELT---RFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRED  397 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~---~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~  397 (721)
                      ....++|+| +++.++. ..    .+..|++||+.+++.....   ....+...+..++|+|+|+.++....++      
T Consensus       124 ~~~~~~~s~-~~~~~~~-~~----~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~------  191 (433)
T 3bws_A          124 QPKSVRFID-NTRLAIP-LL----EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN------  191 (433)
T ss_dssp             CBCCCEESS-SSEEEEE-BT----TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT------
T ss_pred             CceEEEEeC-CCeEEEE-eC----CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCC------
Confidence            345789999 8864443 22    3345999999998865432   2234455677789999987666543222      


Q ss_pred             CcceeEEEeccCCCCccee--cccCCCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeE
Q 004971          398 GNNQLLLENIKSPLPDISL--FRFDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAV  471 (721)
Q Consensus       398 ~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~l  471 (721)
                         .+.++++.++......  .......++|+|||+.+++..  ++.|++||+.+++.....  ...+..++|+|||+.|
T Consensus       192 ---~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l  268 (433)
T 3bws_A          192 ---AVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKEL  268 (433)
T ss_dssp             ---EEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEE
T ss_pred             ---EEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEE
Confidence               4677776654221111  122334579999999987774  678999999888754443  3457789999999999


Q ss_pred             EEEecCCCCCC-CCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce
Q 004971          472 VYTSGGPEFAS-ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL  550 (721)
Q Consensus       472 a~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~  550 (721)
                      ++...+..... .++.+.+|++.  +.    +......+......++|+|||++|++....  +..|++||+.+++.  .
T Consensus       269 ~~~~~~~~~~~~~dg~i~~~d~~--~~----~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--~~~v~v~d~~~~~~--~  338 (433)
T 3bws_A          269 YIAQFSASNQESGGGRLGIYSMD--KE----KLIDTIGPPGNKRHIVSGNTENKIYVSDMC--CSKIEVYDLKEKKV--Q  338 (433)
T ss_dssp             EEEEEESCTTCSCCEEEEEEETT--TT----EEEEEEEEEECEEEEEECSSTTEEEEEETT--TTEEEEEETTTTEE--E
T ss_pred             EEEECCCCccccCCCeEEEEECC--CC----cEEeeccCCCCcceEEECCCCCEEEEEecC--CCEEEEEECCCCcE--E
Confidence            98874211111 24455555543  32    333333333356678999999998887643  56899999998874  3


Q ss_pred             EECcCCCcCceeeEEccCCCEEEEEEccCCC--------CCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEE
Q 004971          551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNP--------GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI  622 (721)
Q Consensus       551 ~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~--------~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l  622 (721)
                      ..+. ....+..++|+|||+.|+++......        ......|++||+.+++......  ....+..++|+|||++|
T Consensus       339 ~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l  415 (433)
T 3bws_A          339 KSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE--AGNQPTGLDVSPDNRYL  415 (433)
T ss_dssp             EEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSCEE
T ss_pred             EEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec--CCCCCceEEEcCCCCEE
Confidence            3333 34456789999999999888764210        0002389999999988776654  34567889999999999


Q ss_pred             EEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971          623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                      ++.+..++                .|++|++++
T Consensus       416 ~~~~~~d~----------------~i~v~~~~~  432 (433)
T 3bws_A          416 VISDFLDH----------------QIRVYRRDG  432 (433)
T ss_dssp             EEEETTTT----------------EEEEEEETT
T ss_pred             EEEECCCC----------------eEEEEEecC
Confidence            88775443                488998764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.83  E-value=3.4e-19  Score=185.85  Aligned_cols=270  Identities=12%  Similarity=0.050  Sum_probs=185.3

Q ss_pred             CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEec--cCCCCcc----eecccCCCCceeCcCCCEEEEE-eCCcE
Q 004971          369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENI--KSPLPDI----SLFRFDGSFPSFSPKGDRIAFV-EFPGV  441 (721)
Q Consensus       369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~----~~~~~~~~~~~~SpDG~~la~~-~~~~l  441 (721)
                      ...+..++|||||+.|+..+ +.....|++  .++....  .......    .........++|+||++ |+.. .++.|
T Consensus        30 ~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-l~~~s~dg~v  105 (344)
T 4gqb_B           30 ERQLEAARYRSDGALLLGAS-SLSGRCWAG--SLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERG-ILVASDSGAV  105 (344)
T ss_dssp             CSEEEEEEECTTSCEEEEEE-CCSSSCCCE--EEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTE-EEEEETTSEE
T ss_pred             cCCEEEEEECCCCCEEEEEe-CCceEEeec--eeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCe-EEEEECCCEE
Confidence            44567789999999888765 333222222  2233221  1111111    11112244579999974 5554 58899


Q ss_pred             EEEECCCCceEEEe-------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCc
Q 004971          442 YVVNSDGSNRRQVY-------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNA  514 (721)
Q Consensus       442 ~v~d~~~g~~~~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  514 (721)
                      .+||+.+++.....       ...+..++|+|||++|+..+       .++.++||++....     ....+..+...+.
T Consensus       106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs-------~d~~i~iwd~~~~~-----~~~~~~~h~~~V~  173 (344)
T 4gqb_B          106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS-------KDICIKVWDLAQQV-----VLSSYRAHAAQVT  173 (344)
T ss_dssp             EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE-------TTSCEEEEETTTTE-----EEEEECCCSSCEE
T ss_pred             EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe-------CCCeEEEEECCCCc-----EEEEEcCcCCceE
Confidence            99999887642221       35688999999999999887       57889999876432     5566777777888


Q ss_pred             ceEEccCCCE-EEEEEeeCCceeEEEEECCCCcccceEECcC--CCcCceeeEEccCC-CEEEEEEccCCCCCCceeEEE
Q 004971          515 FPSVSPDGKW-IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE--GPWSDTMCNWSPDG-EWIAFASDRDNPGSGSFEMYL  590 (721)
Q Consensus       515 ~~~~SpDg~~-l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~--~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~~~i~~  590 (721)
                      .++|+|+++. |+..+.   +..|++||+.+++.  ...+..  +...+..++|+|++ +.|+.+..++       .|++
T Consensus       174 ~~~~~~~~~~~l~s~s~---D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg-------~v~~  241 (344)
T 4gqb_B          174 CVAASPHKDSVFLSCSE---DNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG-------TVSL  241 (344)
T ss_dssp             EEEECSSCTTEEEEEET---TSCEEEEETTSSSC--EEECC----CCCEEEEEECSSCTTEEEEEETTS-------EEEE
T ss_pred             EEEecCCCCCceeeecc---ccccccccccccce--eeeeecceeeccceeeeecCCCCcceEEeccCC-------cEEE
Confidence            9999999975 455554   67899999998875  445532  23346789999965 5566666664       8999


Q ss_pred             EecCCCceEEeeecCCCCCcCCeEECCCCC-EEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCC
Q 004971          591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGK-SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDG  669 (721)
Q Consensus       591 ~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~  669 (721)
                      ||+.+++...... ++...+..++|+|||. +|+..+.+.                 .|++||+.+++..++..|...+.
T Consensus       242 wd~~~~~~~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D~-----------------~i~vwd~~~~~~~~~~~H~~~V~  303 (344)
T 4gqb_B          242 VDTKSTSCVLSSA-VHSQCVTGLVFSPHSVPFLASLSEDC-----------------SLAVLDSSLSELFRSQAHRDFVR  303 (344)
T ss_dssp             EESCC--CCEEEE-CCSSCEEEEEECSSSSCCEEEEETTS-----------------CEEEECTTCCEEEEECCCSSCEE
T ss_pred             EECCCCcEEEEEc-CCCCCEEEEEEccCCCeEEEEEeCCC-----------------eEEEEECCCCcEEEEcCCCCCEE
Confidence            9999887655444 3777889999999995 455555544                 39999999999888888888899


Q ss_pred             CceecCC---cCCccccc
Q 004971          670 TPAWGPR---FIRPVDVE  684 (721)
Q Consensus       670 ~~~~sp~---~l~~~~~~  684 (721)
                      ..+|+|+   +++....|
T Consensus       304 ~v~~sp~~~~llas~s~D  321 (344)
T 4gqb_B          304 DATWSPLNHSLLTTVGWD  321 (344)
T ss_dssp             EEEECSSSTTEEEEEETT
T ss_pred             EEEEeCCCCeEEEEEcCC
Confidence            9999995   34455433

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.83  E-value=2.2e-18  Score=183.38  Aligned_cols=266  Identities=12%  Similarity=0.150  Sum_probs=185.7

Q ss_pred             CeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcc-eecccCCCC
Q 004971          345 SYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI-SLFRFDGSF  423 (721)
Q Consensus       345 ~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~  423 (721)
                      .+..|++||+.+++......  . ...+..++|+|||++|++.....        ..+.++++.++.... .........
T Consensus        10 ~d~~v~v~d~~~~~~~~~~~--~-~~~~~~~~~s~dg~~l~~~~~~d--------~~i~v~d~~~~~~~~~~~~~~~v~~   78 (391)
T 1l0q_A           10 ESDNISVIDVTSNKVTATIP--V-GSNPMGAVISPDGTKVYVANAHS--------NDVSIIDTATNNVIATVPAGSSPQG   78 (391)
T ss_dssp             TTTEEEEEETTTTEEEEEEE--C-SSSEEEEEECTTSSEEEEEEGGG--------TEEEEEETTTTEEEEEEECSSSEEE
T ss_pred             CCCEEEEEECCCCeEEEEee--c-CCCcceEEECCCCCEEEEECCCC--------CeEEEEECCCCeEEEEEECCCCccc
Confidence            34569999999987544332  2 23467899999999987755333        246777775542111 111223445


Q ss_pred             ceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971          424 PSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG  499 (721)
Q Consensus       424 ~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~  499 (721)
                      ++|+|||++|++..  ++.|++||+.+++.....  ...+..++|+|||+.|+++..      .++.+.+|++..  .  
T Consensus        79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~v~~~d~~~--~--  148 (391)
T 1l0q_A           79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNN------GDKTVSVINTVT--K--  148 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET------TTTEEEEEETTT--T--
T ss_pred             eEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeC------CCCEEEEEECCC--C--
Confidence            78999999998874  578999999988765544  456778999999999987762      456677776533  2  


Q ss_pred             ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971          500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD  579 (721)
Q Consensus       500 ~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~  579 (721)
                       .....+..+ .....++|+|||++|++....  +..|++||+.+++.  ...+ .....+..++|+|||++|+++..+.
T Consensus       149 -~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~--~~~v~~~d~~~~~~--~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~  221 (391)
T 1l0q_A          149 -AVINTVSVG-RSPKGIAVTPDGTKVYVANFD--SMSISVIDTVTNSV--IDTV-KVEAAPSGIAVNPEGTKAYVTNVDK  221 (391)
T ss_dssp             -EEEEEEECC-SSEEEEEECTTSSEEEEEETT--TTEEEEEETTTTEE--EEEE-ECSSEEEEEEECTTSSEEEEEEECS
T ss_pred             -cEEEEEecC-CCcceEEECCCCCEEEEEeCC--CCEEEEEECCCCeE--EEEE-ecCCCccceEECCCCCEEEEEecCc
Confidence             133333333 356788999999999776543  56799999998874  3333 3334557899999999999988521


Q ss_pred             CCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971          580 NPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK  659 (721)
Q Consensus       580 ~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  659 (721)
                          ....|++||+.+++.......  ...+..++|+|||++|+++...++                .|++||+.+++..
T Consensus       222 ----~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~s~~~d~----------------~v~v~d~~~~~~~  279 (391)
T 1l0q_A          222 ----YFNTVSMIDTGTNKITARIPV--GPDPAGIAVTPDGKKVYVALSFXN----------------TVSVIDTATNTIT  279 (391)
T ss_dssp             ----SCCEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTTT----------------EEEEEETTTTEEE
T ss_pred             ----CCCcEEEEECCCCeEEEEEec--CCCccEEEEccCCCEEEEEcCCCC----------------EEEEEECCCCcEE
Confidence                224899999998876665542  344677899999999987765543                4999999988764


Q ss_pred             E
Q 004971          660 R  660 (721)
Q Consensus       660 ~  660 (721)
                      .
T Consensus       280 ~  280 (391)
T 1l0q_A          280 A  280 (391)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.83  E-value=2.3e-19  Score=192.91  Aligned_cols=304  Identities=8%  Similarity=-0.014  Sum_probs=204.4

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      ..+|+|||+.+++.  ..++.+.+|......         ....+..+ .......++| +|++|+...     .+..|.
T Consensus        61 ~~~~s~~g~~l~~~--~~d~~v~i~d~~~~~---------~~~~~~~~-~~~~~~~~~~-~~~~l~~~~-----~dg~i~  122 (420)
T 3vl1_A           61 GNTFEKVGSHLYKA--RLDGHDFLFNTIIRD---------GSKMLKRA-DYTAVDTAKL-QMRRFILGT-----TEGDIK  122 (420)
T ss_dssp             TCEEEEEETTEEEE--EETTEEEEEECCSEE---------TTTTSCSC-CEEEEEEECS-SSCEEEEEE-----TTSCEE
T ss_pred             ceeeeecCCeEEEE--EcCCcEEEEEecccc---------eeeEEecC-CceEEEEEec-CCCEEEEEE-----CCCCEE
Confidence            56899998755532  226788888543221         11111111 2233446899 999988864     334599


Q ss_pred             EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--ceecccCCCCceeCc
Q 004971          351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSP  428 (721)
Q Consensus       351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~Sp  428 (721)
                      +||+.+++....  ...+...+..++|+|+++.|+....++.         +.++++..+...  +.........++|+|
T Consensus       123 iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~d~~---------i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  191 (420)
T 3vl1_A          123 VLDSNFNLQREI--DQAHVSEITKLKFFPSGEALISSSQDMQ---------LKIWSVKDGSNPRTLIGHRATVTDIAIID  191 (420)
T ss_dssp             EECTTSCEEEEE--TTSSSSCEEEEEECTTSSEEEEEETTSE---------EEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred             EEeCCCcceeee--cccccCccEEEEECCCCCEEEEEeCCCe---------EEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence            999998875433  3456778889999999999887665443         667777654322  222233345679999


Q ss_pred             CCCEEEEEe-CCcEEEEECCCCceEEEee---------------------------cCceeeEEcCCCCeEEEEecCCCC
Q 004971          429 KGDRIAFVE-FPGVYVVNSDGSNRRQVYF---------------------------KNAFSTVWDPVREAVVYTSGGPEF  480 (721)
Q Consensus       429 DG~~la~~~-~~~l~v~d~~~g~~~~l~~---------------------------~~~~~~~~spdg~~la~~~~~~~~  480 (721)
                      ||+.|+..+ ++.|.+||+.+++......                           ..+..+.|+|+|+.|+..+     
T Consensus       192 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----  266 (420)
T 3vl1_A          192 RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH-----  266 (420)
T ss_dssp             TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE-----
T ss_pred             CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc-----
Confidence            999999885 6789999999887544331                           3345677899999998886     


Q ss_pred             CCCCCcEEEEEEEccCCCCccceEEcc-cCCCCCcceEEccCCC-EEEEEEeeCCceeEEEEECCCCcccceEECcC-CC
Q 004971          481 ASESSEVDIISINVDDVDGVSAVRRLT-TNGKNNAFPSVSPDGK-WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-GP  557 (721)
Q Consensus       481 ~~~~~~~~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~SpDg~-~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~~  557 (721)
                        .++.+.+|++....     ....+. .+...+..++|+|+++ +|+..+.   +..|++||+.+++. .+..+.. +.
T Consensus       267 --~dg~i~i~d~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~---dg~i~vwd~~~~~~-~~~~~~~~~~  335 (420)
T 3vl1_A          267 --VSGVITVHNVFSKE-----QTIQLPSKFTCSCNSLTVDGNNANYIYAGYE---NGMLAQWDLRSPEC-PVGEFLINEG  335 (420)
T ss_dssp             --TTSCEEEEETTTCC-----EEEEECCTTSSCEEEEEECSSCTTEEEEEET---TSEEEEEETTCTTS-CSEEEEESTT
T ss_pred             --CCCeEEEEECCCCc-----eeEEcccccCCCceeEEEeCCCCCEEEEEeC---CCeEEEEEcCCCcC-chhhhhccCC
Confidence              57889999876543     333333 3446778899999999 7877776   67899999998752 1344443 33


Q ss_pred             cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc----------eEEeeecCCCCCcCCeEECCCCC---EEEE
Q 004971          558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG----------LRKLIQSGSAGRANHPYFSPDGK---SIVF  624 (721)
Q Consensus       558 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~----------~~~l~~~~~~~~~~~~~~SpDG~---~l~~  624 (721)
                      ..+..+ ++|+|+.|+.++.++       .|++|++...+          ...+.  .+...+..++|+|||+   .|+.
T Consensus       336 ~~v~~~-~~~~~~~l~s~~~d~-------~v~iw~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~g~l~a  405 (420)
T 3vl1_A          336 TPINNV-YFAAGALFVSSGFDT-------SIKLDIISDPESERPAIEFETPTFLV--SNDDAVSQFCYVSDDESNGEVLE  405 (420)
T ss_dssp             SCEEEE-EEETTEEEEEETTTE-------EEEEEEECCTTCCSCEECTTSCEEEC--CSSCCCCEEEEECCSSSSCEEEE
T ss_pred             CCceEE-EeCCCCEEEEecCCc-------cEEEEeccCCCCCccceeccCccEEc--cCCcceEEEEEccCCCCcceEEE
Confidence            344444 667888887777664       89999987631          22221  2556788899999999   7777


Q ss_pred             EEecC
Q 004971          625 TSDYG  629 (721)
Q Consensus       625 ~~~~~  629 (721)
                      ...++
T Consensus       406 ~g~~g  410 (420)
T 3vl1_A          406 VGKNN  410 (420)
T ss_dssp             EETTT
T ss_pred             EcCCc
Confidence            66654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.83  E-value=3.1e-18  Score=179.05  Aligned_cols=281  Identities=15%  Similarity=0.191  Sum_probs=187.2

Q ss_pred             cCceeecCCCCEEEEEEecC----CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCC
Q 004971          323 FTPATSPGNNKFIAVATRRP----TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDG  398 (721)
Q Consensus       323 ~~~~~sp~dG~~la~~~~~~----g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~  398 (721)
                      ..+.+   ||++|+|.....    +.....|+++|+++++.+.+       ..+..+.|||||++|+|.......    +
T Consensus        18 ~~~~~---dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~----~   83 (347)
T 2gop_A           18 SDPRT---KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEK----K   83 (347)
T ss_dssp             EEEEE---ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTT----T
T ss_pred             ccceE---CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCC----C
Confidence            45556   899999975432    22367799999999886665       234568999999999998876521    1


Q ss_pred             cceeEEEeccCCC-CcceecccCCCCceeCcCCCEEEEEe----------------------------CCcEEEEECCCC
Q 004971          399 NNQLLLENIKSPL-PDISLFRFDGSFPSFSPKGDRIAFVE----------------------------FPGVYVVNSDGS  449 (721)
Q Consensus       399 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~SpDG~~la~~~----------------------------~~~l~v~d~~~g  449 (721)
                      ...+++.++.++. ..+..... ...+.|||||++|+|..                            ...|+++++.++
T Consensus        84 ~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~  162 (347)
T 2gop_A           84 VSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE  162 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred             cceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence            1568888887652 22332223 55689999999999984                            256999999998


Q ss_pred             ce-EEEeecCceeeEEcCCCCeEEEEecCCCCCCCCC-cEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEE
Q 004971          450 NR-RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESS-EVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVF  527 (721)
Q Consensus       450 ~~-~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~  527 (721)
                      +. +.+....+..+.|+|||  ++++........... ...||.++ .+     ..+.+..+ ...  ..+||||++|++
T Consensus       163 ~~~~~l~~~~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d-~~-----~~~~l~~~-~~~--~~~spdg~~l~~  231 (347)
T 2gop_A          163 EVIEEFEKPRFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE-DG-----KEEKMFEK-VSF--YAVDSDGERILL  231 (347)
T ss_dssp             EEEEEEEEETTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE-TT-----EEEEEEEE-ESE--EEEEECSSCEEE
T ss_pred             eEEeeecCCCcccccCCCCe--EEEEEecccccccccccccEEEeC-CC-----ceEEeccC-cce--eeECCCCCEEEE
Confidence            87 66663277889999999  555542110000002 67888888 32     55666654 333  344999999999


Q ss_pred             EEeeC-----CceeEEEEECCCCcccceEECcCC-CcCcee-eEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE
Q 004971          528 RSTRT-----GYKNLYIMDAEGGEGYGLHRLTEG-PWSDTM-CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK  600 (721)
Q Consensus       528 ~s~~~-----g~~~l~~~d~~~g~~~~~~~l~~~-~~~~~~-~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~  600 (721)
                      .+...     ...+||++|  +++   ...+... ...+.. +.|+ ||  |++.....    +...|| ++  +++.++
T Consensus       232 ~~~~~~~~~~~~~~l~~~d--~~~---~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~----~~~~l~-~~--~g~~~~  296 (347)
T 2gop_A          232 YGKPEKKYMSEHNKLYIYD--GKE---VMGILDEVDRGVGQAKIKD-GK--VYFTLFEE----GSVNLY-IW--DGEIKP  296 (347)
T ss_dssp             EECCSSSCCCSSCEEEEEC--SSC---EEESSTTCCSEEEEEEEET-TE--EEEEEEET----TEEEEE-EE--SSSEEE
T ss_pred             EEccccCCccccceEEEEC--CCc---eEeccccCCcccCCccEEc-Cc--EEEEEecC----CcEEEE-Ec--CCceEE
Confidence            98643     245899999  566   5666654 344555 8999 88  55555442    556777 77  466666


Q ss_pred             eeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCC
Q 004971          601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNS  665 (721)
Q Consensus       601 l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~  665 (721)
                      ++.  ..+.+..++|+|  + +++.....+.             ..+||.+|   ++.++||.+.
T Consensus       297 ~~~--~~~~v~~~~~s~--~-~~~~~~~~~~-------------~~~l~~~~---g~~~~lt~~n  340 (347)
T 2gop_A          297 IAK--GRHWIMGFDVDE--I-VVYLKETATR-------------LRELFTWD---GEEKQLTDYN  340 (347)
T ss_dssp             EEC--SSSEEEEEEESS--S-EEEEEECSSS-------------CCEEEEES---SSEEECCCTT
T ss_pred             Eec--CCCeEEeeeeeC--c-EEEEEcCCCC-------------hHHheEeC---CcEEEecccc
Confidence            654  355677889999  4 4444443332             13699887   6788899754

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.82  E-value=5.8e-18  Score=194.30  Aligned_cols=304  Identities=9%  Similarity=-0.016  Sum_probs=210.5

Q ss_pred             eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeeccc----CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcce
Q 004971          326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFV----SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQ  401 (721)
Q Consensus       326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~----~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~  401 (721)
                      ..+| ||++++|.....+.....||+.+..+++.+.+....    ++...+..++|||||++|+|.....+...    ..
T Consensus        74 ~p~~-dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~----~~  148 (695)
T 2bkl_A           74 TPSR-RNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADE----AV  148 (695)
T ss_dssp             CCEE-ETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSC----CE
T ss_pred             CCEE-ECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCce----EE
Confidence            3468 999999988776655677899998877766665321    12234678999999999999887665321    57


Q ss_pred             eEEEeccCCCCc-ceeccc-CCCCceeCcCCCEEEEEeC-C-------------cEEEEECCCCce--EEEee-----cC
Q 004971          402 LLLENIKSPLPD-ISLFRF-DGSFPSFSPKGDRIAFVEF-P-------------GVYVVNSDGSNR--RQVYF-----KN  458 (721)
Q Consensus       402 l~~~~~~~~~~~-~~~~~~-~~~~~~~SpDG~~la~~~~-~-------------~l~v~d~~~g~~--~~l~~-----~~  458 (721)
                      |++.++.++... ...... ....++|||||+.|+|... .             .|++|++.++..  +.+..     ..
T Consensus       149 i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~  228 (695)
T 2bkl_A          149 LHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTT  228 (695)
T ss_dssp             EEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTC
T ss_pred             EEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEE
Confidence            899998776432 111211 1256899999999999852 2             299999988763  44441     24


Q ss_pred             ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC-CceeE
Q 004971          459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT-GYKNL  537 (721)
Q Consensus       459 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~-g~~~l  537 (721)
                      ...+.|||||++|++.+..     ......||.++..++    ..+.|.........+.| +||+ |++.++.+ +...|
T Consensus       229 ~~~~~~SpDG~~l~~~~~~-----~~~~~~l~~~~~~~~----~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l  297 (695)
T 2bkl_A          229 FLQSDLSRDGKYLFVYILR-----GWSENDVYWKRPGEK----DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRV  297 (695)
T ss_dssp             EEEEEECTTSCCEEEEEEE-----TTTEEEEEEECTTCS----SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEE
T ss_pred             EEEEEECCCCCEEEEEEeC-----CCCceEEEEEcCCCC----ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEE
Confidence            5689999999999998731     115677888866543    56777766555566666 7888 88887654 46799


Q ss_pred             EEEECCCCcccceEECcCC--CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEE
Q 004971          538 YIMDAEGGEGYGLHRLTEG--PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF  615 (721)
Q Consensus       538 ~~~d~~~g~~~~~~~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~  615 (721)
                      +++|+++++......+..+  ...+..++|+  +.+|++.....    +...|++++++++..+.+... ..+.+..+++
T Consensus       298 ~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~d----g~~~l~~~~~~g~~~~~l~~~-~~~~v~~~~~  370 (695)
T 2bkl_A          298 FEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKD----ATSEVRVATLKGKPVRTVQLP-GVGAASNLMG  370 (695)
T ss_dssp             EEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEET----TEEEEEEEETTCCEEEECCCS-SSSEECCCBS
T ss_pred             EEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEEC----CEEEEEEEeCCCCeeEEecCC-CCeEEEEeec
Confidence            9999988763223445433  2334567777  44566666553    667899999876655555321 2455677889


Q ss_pred             CCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCC
Q 004971          616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNS  665 (721)
Q Consensus       616 SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~  665 (721)
                      +|||+.|++.......             ++.||.||+++++.+.++...
T Consensus       371 s~d~~~l~~~~ss~~~-------------P~~v~~~d~~~g~~~~l~~~~  407 (695)
T 2bkl_A          371 LEDLDDAYYVFTSFTT-------------PRQIYKTSVSTGKSELWAKVD  407 (695)
T ss_dssp             CTTCSEEEEEEEETTE-------------EEEEEEEETTTCCEEEEEECC
T ss_pred             CCCCCEEEEEEcCCCC-------------CCEEEEEECCCCcEEEEecCC
Confidence            9999999887765433             357999999999888887633

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.82  E-value=4.4e-18  Score=179.23  Aligned_cols=297  Identities=12%  Similarity=0.069  Sum_probs=190.0

Q ss_pred             ceeccCCeEEEEeccCC-----CCcEEEEEEecCCCcceeccccceE--EeCCCCCcccCceeecCCCCEEEEEEecC--
Q 004971          272 PCWVDESTLFFHRKSEE-----DDWISVYKVILPQTGLVSTESVSIQ--RVTPPGLHAFTPATSPGNNKFIAVATRRP--  342 (721)
Q Consensus       272 ~~ws~dg~l~~~~~~~~-----~g~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~sp~dG~~la~~~~~~--  342 (721)
                      .+|+|||+++++...+.     +..+.+|++........ .......  .+..+..  ...++++ +++.++...+..  
T Consensus        20 v~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~-~~~~~~~~~~l~~~~~--~v~s~~~-~~~~~~~g~~~~~~   95 (365)
T 4h5i_A           20 AKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK-EQFHILSEFALEDNDD--SPTAIDA-SKGIILVGCNENST   95 (365)
T ss_dssp             EEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHH-HHEEEEEEEECCTTSC--CCCEEEE-ETTEEEEECCCCHH
T ss_pred             EEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCccee-eeeeeeeEEEccCCCC--ceEEEEe-CCCEEEEEECCCcc
Confidence            47999999887532211     22478887654432100 0000111  1222222  2346677 888877654322  


Q ss_pred             ----CCCeeeEEEEECCCCce--EEeec-----ccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC
Q 004971          343 ----TSSYRHIELFDLVKNKF--IELTR-----FVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL  411 (721)
Q Consensus       343 ----g~~~~~l~l~dl~tg~~--~~l~~-----~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  411 (721)
                          +..+..+++|++.+.+.  ..+..     ...+...+..++|||||+.|++++....       ..+.++++.+..
T Consensus        96 ~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d-------~~i~iwd~~~~~  168 (365)
T 4h5i_A           96 KITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVP-------AIMRIIDPSDLT  168 (365)
T ss_dssp             HHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSS-------CEEEEEETTTTE
T ss_pred             EEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCC-------CEEEEeECCCCc
Confidence                34456688888765432  11111     1112233556899999999988765444       346777776553


Q ss_pred             Ccce-ecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCC
Q 004971          412 PDIS-LFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESS  485 (721)
Q Consensus       412 ~~~~-~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~  485 (721)
                      .... ........++|||||++|+..++..+.+|+..++......     ...+..++|+|||+.++..+..     ...
T Consensus       169 ~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d-----~~~  243 (365)
T 4h5i_A          169 EKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLK-----KGK  243 (365)
T ss_dssp             EEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEES-----SSC
T ss_pred             EEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecC-----Ccc
Confidence            2211 1233456689999999999998888999998877654322     2356789999999999988742     223


Q ss_pred             cEEEEEEEccCCC-CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE-CcCCCcCceee
Q 004971          486 EVDIISINVDDVD-GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR-LTEGPWSDTMC  563 (721)
Q Consensus       486 ~~~i~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~-l~~~~~~~~~~  563 (721)
                      .+.++.++..... .......+..+...+..++|||||++|+..+.   +..|++||+.+++.  +.. +..+...+..+
T Consensus       244 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~---D~~V~iwd~~~~~~--~~~~~~gH~~~V~~v  318 (365)
T 4h5i_A          244 GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN---DNSIALVKLKDLSM--SKIFKQAHSFAITEV  318 (365)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET---TSCEEEEETTTTEE--EEEETTSSSSCEEEE
T ss_pred             eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC---CCEEEEEECCCCcE--EEEecCcccCCEEEE
Confidence            3344444433220 00112345555567788999999999999987   78899999999875  555 35577788999


Q ss_pred             EEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971          564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       564 ~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                      +|||||++|+.++.+.       .|.+|++..+
T Consensus       319 ~fSpdg~~laS~S~D~-------tvrvw~ip~~  344 (365)
T 4h5i_A          319 TISPDSTYVASVSAAN-------TIHIIKLPLN  344 (365)
T ss_dssp             EECTTSCEEEEEETTS-------EEEEEECCTT
T ss_pred             EECCCCCEEEEEeCCC-------eEEEEEcCCC
Confidence            9999999999999886       8999998543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.82  E-value=1.2e-18  Score=181.97  Aligned_cols=286  Identities=12%  Similarity=0.092  Sum_probs=194.2

Q ss_pred             EeCCCCCcccCcee-----ecCCCCEEEEEEecCCCCeeeEEEEECCCCc-----eEEeecccCCCCcccCcEEcCCCCE
Q 004971          314 RVTPPGLHAFTPAT-----SPGNNKFIAVATRRPTSSYRHIELFDLVKNK-----FIELTRFVSPKTHHLNPFISPDSSR  383 (721)
Q Consensus       314 ~~~~~~~~~~~~~~-----sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~-----~~~l~~~~~~~~~~~~~~~Spdg~~  383 (721)
                      .+.+|...+..++|     ++.|+++|+..+     .+..|++||+.+++     .........|...+..++|+|++..
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs-----~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~   90 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGS-----RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF   90 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEE-----TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEc-----CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence            34455555666776     432788887754     34569999997543     1223334566777888999999999


Q ss_pred             EEEEEeeCCCCCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe-----
Q 004971          384 VGYHKCRGGSTREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY-----  455 (721)
Q Consensus       384 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~-----  455 (721)
                      |+..+.++.         +.++++..+..  .+.........++|+|||++|+..+ ++.|.+||+.+.....+.     
T Consensus        91 l~s~s~D~~---------v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~  161 (343)
T 2xzm_R           91 AISSSWDKT---------LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH  161 (343)
T ss_dssp             EEEEETTSE---------EEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSC
T ss_pred             EEEEcCCCc---------EEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCC
Confidence            987665554         56666655422  1111223345579999999998885 789999999854433322     


Q ss_pred             ecCceeeEEcCCC----------CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEE
Q 004971          456 FKNAFSTVWDPVR----------EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI  525 (721)
Q Consensus       456 ~~~~~~~~~spdg----------~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l  525 (721)
                      ...+..+.|+|++          ..|+..+       .++.+.+|+  ...    .....+..+...+..++|+|||++|
T Consensus       162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~-------~d~~i~iwd--~~~----~~~~~~~~h~~~v~~~~~s~~g~~l  228 (343)
T 2xzm_R          162 SDWVSCVRYSPIMKSANKVQPFAPYFASVG-------WDGRLKVWN--TNF----QIRYTFKAHESNVNHLSISPNGKYI  228 (343)
T ss_dssp             SSCEEEEEECCCCCSCSCCCSSCCEEEEEE-------TTSEEEEEE--TTT----EEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             CceeeeeeeccccccccccCCCCCEEEEEc-------CCCEEEEEc--CCC----ceeEEEcCccccceEEEECCCCCEE
Confidence            2356788999987          5677665       578899998  222    2445566666778889999999999


Q ss_pred             EEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE---ee
Q 004971          526 VFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK---LI  602 (721)
Q Consensus       526 ~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~---l~  602 (721)
                      +..+.   +..|++||+...... ...+ .....+..++|+||++.|+.+...        .|++|++.+++...   +.
T Consensus       229 ~sgs~---dg~v~iwd~~~~~~~-~~~~-~~~~~v~~v~~sp~~~~la~~~d~--------~v~iw~~~~~~~~~~~~~~  295 (343)
T 2xzm_R          229 ATGGK---DKKLLIWDILNLTYP-QREF-DAGSTINQIAFNPKLQWVAVGTDQ--------GVKIFNLMTQSKAPVCTIE  295 (343)
T ss_dssp             EEEET---TCEEEEEESSCCSSC-SEEE-ECSSCEEEEEECSSSCEEEEEESS--------CEEEEESSSCCSCSEEECC
T ss_pred             EEEcC---CCeEEEEECCCCccc-ceee-cCCCcEEEEEECCCCCEEEEECCC--------CEEEEEeCCCCCCceEEee
Confidence            99887   789999999433211 2222 223346889999999988765543        69999998765432   21


Q ss_pred             ec---------CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971          603 QS---------GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       603 ~~---------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~  656 (721)
                      ..         ++...+..++|+|||++|+..+.++                 .|.+|+++++
T Consensus       296 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg-----------------~v~~w~~~~g  341 (343)
T 2xzm_R          296 AEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDG-----------------VIRTFSFETS  341 (343)
T ss_dssp             CCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTS-----------------EEEEEEEEEE
T ss_pred             cCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCc-----------------eEEEEEEEcc
Confidence            00         2344567899999999998877665                 3888887654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.82  E-value=5.1e-19  Score=191.36  Aligned_cols=297  Identities=13%  Similarity=0.082  Sum_probs=198.0

Q ss_pred             CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcC-CCCEEEEEEeeCCCCCC
Q 004971          318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISP-DSSRVGYHKCRGGSTRE  396 (721)
Q Consensus       318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~~~  396 (721)
                      +...+..++|+|.+++.|+...     .++.|.+||+.+++...+....+|...+..++|+| |++.|+..+.++.    
T Consensus       118 ~~~~V~~l~~~P~~~~~lasGs-----~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~----  188 (435)
T 4e54_B          118 FDRRATSLAWHPTHPSTVAVGS-----KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT----  188 (435)
T ss_dssp             CSSCEEEEEECSSCTTCEEEEE-----TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC----
T ss_pred             CCCCEEEEEEeCCCCCEEEEEe-----CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE----
Confidence            3445678999993345666643     44569999999887555555566778889999998 6788887665554    


Q ss_pred             CCcceeEEEeccCCCCcceec----ccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCC
Q 004971          397 DGNNQLLLENIKSPLPDISLF----RFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVRE  469 (721)
Q Consensus       397 ~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~  469 (721)
                           +.++++.+........    ......++|+|||+.|+..+ ++.|++||+.+.....+.  ...+..+.|+|+++
T Consensus       189 -----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~  263 (435)
T 4e54_B          189 -----TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCD  263 (435)
T ss_dssp             -----EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCS
T ss_pred             -----EEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCc
Confidence                 5555665442111111    11123578999999998884 788999999876655444  56788999999998


Q ss_pred             eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccc
Q 004971          470 AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG  549 (721)
Q Consensus       470 ~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~  549 (721)
                      .++++.      ..++.+.||++.....  .........+...+..++|+|||++|+..+.   +..|++||+.+++.  
T Consensus       264 ~~~~s~------s~d~~v~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~---D~~i~iwd~~~~~~--  330 (435)
T 4e54_B          264 WFLATA------SVDQTVKIWDLRQVRG--KASFLYSLPHRHPVNAACFSPDGARLLTTDQ---KSEIRVYSASQWDC--  330 (435)
T ss_dssp             SEEEEE------ETTSBCCEEETTTCCS--SSCCSBCCBCSSCEEECCBCTTSSEEEEEES---SSCEEEEESSSSSS--
T ss_pred             eEEEEe------cCcceeeEEecccccc--cceEEEeeeccccccceeECCCCCeeEEEcC---CCEEEEEECCCCcc--
Confidence            766554      2578899998765332  0111122334456778899999999998887   78899999998774  


Q ss_pred             eEECcCCC------cCceeeEEccCCCEEEEEEccCCC-----CCCceeEEEEecCCCceEEeeecCCCCCcCCe-EECC
Q 004971          550 LHRLTEGP------WSDTMCNWSPDGEWIAFASDRDNP-----GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHP-YFSP  617 (721)
Q Consensus       550 ~~~l~~~~------~~~~~~~~SpDG~~l~~~~~~~~~-----~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~-~~Sp  617 (721)
                      +..+..+.      .......|+|++..++++......     ......|++||..+++.......++...+..+ +|||
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp  410 (435)
T 4e54_B          331 PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP  410 (435)
T ss_dssp             EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT
T ss_pred             ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC
Confidence            33333221      123456899999888877643211     11234699999999887655443355566666 6999


Q ss_pred             CCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971          618 DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK  659 (721)
Q Consensus       618 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  659 (721)
                      ||++|+..+ ++                 .|++|+++.++.+
T Consensus       411 dg~~lasg~-d~-----------------~i~iW~~~~gk~r  434 (435)
T 4e54_B          411 MGDTLASAM-GY-----------------HILIWSQQEARTR  434 (435)
T ss_dssp             TSSCEEEEC-SS-----------------EEEECCCC-----
T ss_pred             CCCEEEEEc-CC-----------------cEEEEECCcCeee
Confidence            999887543 32                 3999999888765

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.82  E-value=1.6e-18  Score=180.92  Aligned_cols=271  Identities=12%  Similarity=0.067  Sum_probs=193.9

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      ...|++|++++++  ...++.+.+|......         ....+..+...+..++|+| +|++|+...     .+..+.
T Consensus        60 ~~~~s~d~~~l~s--~s~Dg~v~iWd~~~~~---------~~~~~~~~~~~v~~~~~s~-~~~~l~s~~-----~d~~v~  122 (340)
T 1got_B           60 AMHWGTDSRLLLS--ASQDGKLIIWDSYTTN---------KVHAIPLRSSWVMTCAYAP-SGNYVACGG-----LDNICS  122 (340)
T ss_dssp             EEEECTTSSEEEE--EETTTEEEEEETTTCC---------EEEEEECSSSCEEEEEECT-TSSEEEEEE-----TTCEEE
T ss_pred             EEEECCCCCEEEE--EeCCCcEEEEECCCCC---------cceEeecCCccEEEEEECC-CCCEEEEEe-----CCCeEE
Confidence            3479999987774  3347899999543322         4444555555677889999 999988754     345699


Q ss_pred             EEECCCCc--eEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--ceecccCCCCcee
Q 004971          351 LFDLVKNK--FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSF  426 (721)
Q Consensus       351 l~dl~tg~--~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~  426 (721)
                      +||+.+++  .........+...+....|++++. ++..+.++.         +.++++..+...  +.........++|
T Consensus       123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~---------i~~wd~~~~~~~~~~~~h~~~v~~~~~  192 (340)
T 1got_B          123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTT---------CALWDIETGQQTTTFTGHTGDVMSLSL  192 (340)
T ss_dssp             EEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSC---------EEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             EEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCc---------EEEEECCCCcEEEEEcCCCCceEEEEE
Confidence            99998753  223333445666777888998875 555444433         566666554211  1112223445799


Q ss_pred             CcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccc
Q 004971          427 SPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA  502 (721)
Q Consensus       427 SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  502 (721)
                      +|+++.++..+ ++.|.+||+.++......   ...+..++|+|+|+.|+..+       .++.++||++....     .
T Consensus       193 ~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-------~d~~v~iwd~~~~~-----~  260 (340)
T 1got_B          193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-------DDATCRLFDLRADQ-----E  260 (340)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSCEEEEETTTTE-----E
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-------CCCcEEEEECCCCc-----E
Confidence            99999888875 889999999888755443   45678999999999999887       57899999875432     2


Q ss_pred             eEEcccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCC
Q 004971          503 VRRLTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN  580 (721)
Q Consensus       503 ~~~l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~  580 (721)
                      ...+....  ..+..++|+|||++|+..+.   +..|++||..+++.  +..+..+...+..++|+|||+.|+.++.++ 
T Consensus       261 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---d~~i~vwd~~~~~~--~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~-  334 (340)
T 1got_B          261 LMTYSHDNIICGITSVSFSKSGRLLLAGYD---DFNCNVWDALKADR--AGVLAGHDNRVSCLGVTDDGMAVATGSWDS-  334 (340)
T ss_dssp             EEEECCTTCCSCEEEEEECTTSSEEEEEET---TSEEEEEETTTCCE--EEEEECCSSCEEEEEECTTSSCEEEEETTS-
T ss_pred             EEEEccCCcccceEEEEECCCCCEEEEECC---CCeEEEEEcccCcE--eeEeecCCCcEEEEEEcCCCCEEEEEcCCc-
Confidence            33333222  34677899999999998887   78899999988775  566767777788999999999999998875 


Q ss_pred             CCCCceeEEEEe
Q 004971          581 PGSGSFEMYLIH  592 (721)
Q Consensus       581 ~~~~~~~i~~~d  592 (721)
                            .|++||
T Consensus       335 ------~i~iWd  340 (340)
T 1got_B          335 ------FLKIWN  340 (340)
T ss_dssp             ------CEEEEC
T ss_pred             ------cEEecC
Confidence                  788886

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.82  E-value=3.9e-19  Score=186.76  Aligned_cols=287  Identities=8%  Similarity=-0.020  Sum_probs=186.6

Q ss_pred             EEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--c----eecccCCC
Q 004971          349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--I----SLFRFDGS  422 (721)
Q Consensus       349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~----~~~~~~~~  422 (721)
                      ...|++....      ...|...+..++|||||++|+..+.+.. ..|+  ..+++++...+...  +    ........
T Consensus        28 ~~~w~~p~~~------p~~H~~~V~~v~fSpDG~~las~s~d~~-~~wd--~~v~~~~~~~~~~~~~~~~~~~~~~~~V~   98 (357)
T 4g56_B           28 GSAWGRPVTA------PACMEVQIGAVRYRRDGALLLAASSLSS-RTWG--GSIWVFKDPEGAPNESLCTAGVQTEAGVT   98 (357)
T ss_dssp             ------------------CCCSEEEEEEECSSSCEEEEEECSSS-SSCC--EEEEEESSCC---CGGGCSEEEECSSCEE
T ss_pred             ccccCCCCCC------cccccCCEEEEEECCCCCEEEEEcCCCC-cccc--CeEEEEECCCCCcceeEecccCCCCCCEE
Confidence            4567665432      1335667888999999999998775432 2222  24566655433211  1    11122244


Q ss_pred             CceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971          423 FPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD  495 (721)
Q Consensus       423 ~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~  495 (721)
                      .++|+||++.|+...++.|.+||+.+++...+.       ...+..++|+|||++|+..+       .++.+.||++...
T Consensus        99 ~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs-------~dg~v~iwd~~~~  171 (357)
T 4g56_B           99 DVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG-------KDFSVKVWDLSQK  171 (357)
T ss_dssp             EEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE-------TTSCEEEEETTTT
T ss_pred             EEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe-------CCCeEEEEECCCC
Confidence            579999997766666889999999877643211       35678999999999999886       5788999986543


Q ss_pred             CCCCccceEEcccCCCCCcceEEccCCCE-EEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCC-EEE
Q 004971          496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKW-IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE-WIA  573 (721)
Q Consensus       496 ~~~~~~~~~~l~~~~~~~~~~~~SpDg~~-l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~-~l~  573 (721)
                      .     ....+..+...+..++|+|+++. ++..+.   +..|++||+.+++.............+..++|+|++. .|+
T Consensus       172 ~-----~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~---dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la  243 (357)
T 4g56_B          172 A-----VLKSYNAHSSEVNCVAACPGKDTIFLSCGE---DGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA  243 (357)
T ss_dssp             E-----EEEEECCCSSCEEEEEECTTCSSCEEEEET---TSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred             c-----EEEEEcCCCCCEEEEEEccCCCceeeeecc---CCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE
Confidence            2     45666667777888999999874 455554   6789999999887522222233444567899999864 566


Q ss_pred             EEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCE-EEEEEecCCCcCCCCCCCCCCCCCccEEEEE
Q 004971          574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS-IVFTSDYGGISAEPISTPHQYQPYGEIFKIK  652 (721)
Q Consensus       574 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~-l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d  652 (721)
                      .+..+.       .|++||+.+++..+... .+...+..++|+|||+. |+..+.+.                 .|++||
T Consensus       244 ~g~~d~-------~i~~wd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~lasgs~D~-----------------~i~iwd  298 (357)
T 4g56_B          244 CGDETG-------NVSLVNIKNPDSAQTSA-VHSQNITGLAYSYHSSPFLASISEDC-----------------TVAVLD  298 (357)
T ss_dssp             EEESSS-------CEEEEESSCGGGCEEEC-CCSSCEEEEEECSSSSCCEEEEETTS-----------------CEEEEC
T ss_pred             Eeeccc-------ceeEEECCCCcEeEEEe-ccceeEEEEEEcCCCCCEEEEEeCCC-----------------EEEEEE
Confidence            666654       79999998887655443 26677889999999864 55555444                 399999


Q ss_pred             cCCCCeEEeccCCCCCCCceecC-C--cCCccccc
Q 004971          653 LDGSDLKRLTQNSFEDGTPAWGP-R--FIRPVDVE  684 (721)
Q Consensus       653 ~~~~~~~~lt~~~~~~~~~~~sp-~--~l~~~~~~  684 (721)
                      +++++..+...|...+...+|+| +  .|+....|
T Consensus       299 ~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~D  333 (357)
T 4g56_B          299 ADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWD  333 (357)
T ss_dssp             TTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             CCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCC
Confidence            99998877777888889999998 3  56666544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.82  E-value=1.5e-18  Score=195.16  Aligned_cols=283  Identities=13%  Similarity=0.100  Sum_probs=185.5

Q ss_pred             ccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccC---CcceeccCCeEEEEecc-CCCCcEE
Q 004971          218 DFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENG---GWPCWVDESTLFFHRKS-EEDDWIS  293 (721)
Q Consensus       218 ~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~---~~~~ws~dg~l~~~~~~-~~~g~~~  293 (721)
                      ....+|||||++|||++.+++         ..+||.+  ++|+.++++....   ..++|+|| +++|.... ..+....
T Consensus        24 ~~~~~~~~DG~~la~~s~~~g---------~~~lw~~--~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~   91 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSEG---------SVNAYLY--DGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHA   91 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEETT---------EEEEEEE--ETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEE
T ss_pred             hheeecCCCCCeEEEEEccCC---------ceeEEEE--cCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceE
Confidence            344579999999999876443         3567764  6888888875543   26799999 87775432 2345668


Q ss_pred             EEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCccc
Q 004971          294 VYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHL  373 (721)
Q Consensus       294 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~  373 (721)
                      ||.+...+.+       ...+++.... ....+||| ||+.+++++...+.    +.+||+++++.+.+....   .  .
T Consensus        92 l~~~~~~~~g-------~~~~l~~~~~-~~~~~~s~-dg~~~~~~s~~~~~----~~l~d~~~g~~~~l~~~~---~--~  153 (582)
T 3o4h_A           92 LFKVNTSRPG-------EEQRLEAVKP-MRILSGVD-TGEAVVFTGATEDR----VALYALDGGGLRELARLP---G--F  153 (582)
T ss_dssp             EEEEETTSTT-------CCEECTTSCS-BEEEEEEE-CSSCEEEEEECSSC----EEEEEEETTEEEEEEEES---S--C
T ss_pred             EEEEeccCCC-------ccccccCCCC-ceeeeeCC-CCCeEEEEecCCCC----ceEEEccCCcEEEeecCC---C--c
Confidence            8866651111       2335544432 23568999 99998887654332    558999988766665321   1  4


Q ss_pred             CcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEE
Q 004971          374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQ  453 (721)
Q Consensus       374 ~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~  453 (721)
                      .++|||||++|++.+.+...                                            ...|++||+++++.+.
T Consensus       154 ~~~~spDG~~la~~~~~~~~--------------------------------------------~~~i~~~d~~~g~~~~  189 (582)
T 3o4h_A          154 GFVSDIRGDLIAGLGFFGGG--------------------------------------------RVSLFTSNLSSGGLRV  189 (582)
T ss_dssp             EEEEEEETTEEEEEEEEETT--------------------------------------------EEEEEEEETTTCCCEE
T ss_pred             eEEECCCCCEEEEEEEcCCC--------------------------------------------CeEEEEEcCCCCCceE
Confidence            56677777766665433220                                            0348888888888777


Q ss_pred             Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceE--------EccCCC
Q 004971          454 VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPS--------VSPDGK  523 (721)
Q Consensus       454 l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~SpDg~  523 (721)
                      +.  .+.+..++|||||++|+...       .++...||.++.+++    ....+..+...+..++        ||||| 
T Consensus       190 l~~~~~~~~~~~~SpDG~~l~~~~-------~~~~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~spdg-  257 (582)
T 3o4h_A          190 FDSGEGSFSSASISPGMKVTAGLE-------TAREARLVTVDPRDG----SVEDLELPSKDFSSYRPTAITWLGYLPDG-  257 (582)
T ss_dssp             ECCSSCEEEEEEECTTSCEEEEEE-------CSSCEEEEEECTTTC----CEEECCCSCSHHHHHCCSEEEEEEECTTS-
T ss_pred             eecCCCccccceECCCCCEEEEcc-------CCCeeEEEEEcCCCC----cEEEccCCCcChhhhhhccccceeEcCCC-
Confidence            76  34567899999999999433       345567888887764    4454444444556677        99999 


Q ss_pred             EEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEe
Q 004971          524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL  601 (721)
Q Consensus       524 ~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l  601 (721)
                      ++++....+  ..+.+|++  |+   .....  ...+..++|| ||+.++..+...    ....||+++..+ +.+++
T Consensus       258 ~~~~~~~~~--g~~~l~~~--g~---~~~~~--~~~v~~~~~s-dg~~l~~~s~~~----~p~~l~~~d~~~-~~~~l  320 (582)
T 3o4h_A          258 RLAVVARRE--GRSAVFID--GE---RVEAP--QGNHGRVVLW-RGKLVTSHTSLS----TPPRIVSLPSGE-PLLEG  320 (582)
T ss_dssp             CEEEEEEET--TEEEEEET--TE---EECCC--SSEEEEEEEE-TTEEEEEEEETT----EEEEEEEETTCC-EEECC
T ss_pred             cEEEEEEcC--CcEEEEEE--CC---eeccC--CCceEEEEec-CCEEEEEEcCCC----CCCeEEEEcCCC-ceEEE
Confidence            566665553  45667777  55   22222  2345688999 998887766653    556899999876 54444

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.82  E-value=3.1e-17  Score=174.42  Aligned_cols=269  Identities=15%  Similarity=0.121  Sum_probs=182.8

Q ss_pred             CCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC
Q 004971          288 EDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS  367 (721)
Q Consensus       288 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~  367 (721)
                      .++.+.+|...  .+.       ....+..+ ..+..++|+| ||++|++...    .+..|++||+.+++.......  
T Consensus        10 ~d~~v~v~d~~--~~~-------~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~----~d~~i~v~d~~~~~~~~~~~~--   72 (391)
T 1l0q_A           10 ESDNISVIDVT--SNK-------VTATIPVG-SNPMGAVISP-DGTKVYVANA----HSNDVSIIDTATNNVIATVPA--   72 (391)
T ss_dssp             TTTEEEEEETT--TTE-------EEEEEECS-SSEEEEEECT-TSSEEEEEEG----GGTEEEEEETTTTEEEEEEEC--
T ss_pred             CCCEEEEEECC--CCe-------EEEEeecC-CCcceEEECC-CCCEEEEECC----CCCeEEEEECCCCeEEEEEEC--
Confidence            36777777432  211       22233333 3467889999 9998876543    234699999999875443322  


Q ss_pred             CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc-ceecccCCCCceeCcCCCEEEEEe--CCcEEEE
Q 004971          368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGDRIAFVE--FPGVYVV  444 (721)
Q Consensus       368 ~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~SpDG~~la~~~--~~~l~v~  444 (721)
                       ...+..++|+|||++|++.....        ..++++++.++... ..........++|+|||++|++..  ++.|++|
T Consensus        73 -~~~v~~~~~spdg~~l~~~~~~~--------~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~  143 (391)
T 1l0q_A           73 -GSSPQGVAVSPDGKQVYVTNMAS--------STLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVI  143 (391)
T ss_dssp             -SSSEEEEEECTTSSEEEEEETTT--------TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             -CCCccceEECCCCCEEEEEECCC--------CEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence             23677899999999998865433        34777777655221 111122234579999999987663  7889999


Q ss_pred             ECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCC
Q 004971          445 NSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG  522 (721)
Q Consensus       445 d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg  522 (721)
                      |+.+++.....  ...+..+.|+|||++|+++..      .++.+.+|++..  .    ..............++|+|||
T Consensus       144 d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~------~~~~v~~~d~~~--~----~~~~~~~~~~~~~~~~~~~~g  211 (391)
T 1l0q_A          144 NTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANF------DSMSISVIDTVT--N----SVIDTVKVEAAPSGIAVNPEG  211 (391)
T ss_dssp             ETTTTEEEEEEECCSSEEEEEECTTSSEEEEEET------TTTEEEEEETTT--T----EEEEEEECSSEEEEEEECTTS
T ss_pred             ECCCCcEEEEEecCCCcceEEECCCCCEEEEEeC------CCCEEEEEECCC--C----eEEEEEecCCCccceEECCCC
Confidence            99988765444  455678999999999987752      456677776543  2    323333334456778999999


Q ss_pred             CEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971          523 KWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI  602 (721)
Q Consensus       523 ~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  602 (721)
                      ++|++.+....+..|++||+.+++.  +..+..+ .....++|+|||++|+++....      ..|++||+.+++.....
T Consensus       212 ~~l~~~~~~~~~~~v~~~d~~~~~~--~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d------~~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          212 TKAYVTNVDKYFNTVSMIDTGTNKI--TARIPVG-PDPAGIAVTPDGKKVYVALSFX------NTVSVIDTATNTITATM  282 (391)
T ss_dssp             SEEEEEEECSSCCEEEEEETTTTEE--EEEEECC-SSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEE
T ss_pred             CEEEEEecCcCCCcEEEEECCCCeE--EEEEecC-CCccEEEEccCCCEEEEEcCCC------CEEEEEECCCCcEEEEE
Confidence            9999988533477999999998874  4444433 3457899999999997776432      38999999998776554


Q ss_pred             e
Q 004971          603 Q  603 (721)
Q Consensus       603 ~  603 (721)
                      .
T Consensus       283 ~  283 (391)
T 1l0q_A          283 A  283 (391)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.82  E-value=3.5e-18  Score=178.58  Aligned_cols=287  Identities=11%  Similarity=0.066  Sum_probs=196.0

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      ..+|+|||+++++  ...++.+.||.+......      ........+...+..++|+| ||++|+...     .+..+.
T Consensus        21 ~l~~sp~g~~las--~~~D~~i~iw~~~~~~~~------~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s-----~D~~v~   86 (345)
T 3fm0_A           21 FLAWNPAGTLLAS--CGGDRRIRIWGTEGDSWI------CKSVLSEGHQRTVRKVAWSP-CGNYLASAS-----FDATTC   86 (345)
T ss_dssp             EEEECTTSSCEEE--EETTSCEEEEEEETTEEE------EEEEECSSCSSCEEEEEECT-TSSEEEEEE-----TTSCEE
T ss_pred             EEEECCCCCEEEE--EcCCCeEEEEEcCCCcce------eeeeeccccCCcEEEEEECC-CCCEEEEEE-----CCCcEE
Confidence            3489999987664  334799999976433200      01111234566778899999 999998854     345599


Q ss_pred             EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC--ccee---cccCCCCce
Q 004971          351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DISL---FRFDGSFPS  425 (721)
Q Consensus       351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~---~~~~~~~~~  425 (721)
                      +||+.++....+.....+...+..++|+|+|+.|+..+.++.         +.++++.....  .+..   .......++
T Consensus        87 iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~---------v~iwd~~~~~~~~~~~~~~~h~~~v~~~~  157 (345)
T 3fm0_A           87 IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS---------VWVWEVDEEDEYECVSVLNSHTQDVKHVV  157 (345)
T ss_dssp             EEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC---------EEEEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred             EEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCe---------EEEEECCCCCCeEEEEEecCcCCCeEEEE
Confidence            999988765555556667788889999999999998776655         45555543321  1111   122234579


Q ss_pred             eCcCCCEEEEEe-CCcEEEEECCCCceEE---Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971          426 FSPKGDRIAFVE-FPGVYVVNSDGSNRRQ---VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG  499 (721)
Q Consensus       426 ~SpDG~~la~~~-~~~l~v~d~~~g~~~~---l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~  499 (721)
                      |+|+|+.|+..+ ++.|.+|++..++...   +.  ...+..++|+|||++|+..+       .++.++||+....+...
T Consensus       158 ~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-------~D~~v~iW~~~~~~~~~  230 (345)
T 3fm0_A          158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-------DDRTVRIWRQYLPGNEQ  230 (345)
T ss_dssp             ECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSCEEEEEEECTTCTT
T ss_pred             ECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-------CCCeEEEeccccCCCCc
Confidence            999999998885 7889999998775432   22  45678999999999999887       57899999986543200


Q ss_pred             c----------cceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc--c-----eEECcCCCcCce
Q 004971          500 V----------SAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY--G-----LHRLTEGPWSDT  561 (721)
Q Consensus       500 ~----------~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~--~-----~~~l~~~~~~~~  561 (721)
                      .          .....+.. +...+..++|+|++..|+..+.   +..|.+|+.+.+...  .     ......+...+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~  307 (345)
T 3fm0_A          231 GVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG---DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVN  307 (345)
T ss_dssp             CCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET---TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEE
T ss_pred             cceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC---CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEe
Confidence            0          01122222 3456778999999999998887   678889987754310  0     111234556788


Q ss_pred             eeEEccCCC-EEEEEEccCCCCCCceeEEEEecCCCc
Q 004971          562 MCNWSPDGE-WIAFASDRDNPGSGSFEMYLIHPNGTG  597 (721)
Q Consensus       562 ~~~~SpDG~-~l~~~~~~~~~~~~~~~i~~~d~~~~~  597 (721)
                      .++|+|++. .|+.++.++       .|++|++.+++
T Consensus       308 ~v~~~p~~~~~laS~s~Dg-------~v~~W~~~~~~  337 (345)
T 3fm0_A          308 CVAWNPKEPGLLASCSDDG-------EVAFWKYQRPE  337 (345)
T ss_dssp             EEEECSSSTTEEEEEETTS-------CEEEEEECC--
T ss_pred             EeEEeCCCceEEEEcCCCC-------cEEEEEecCCC
Confidence            999999985 788787775       89999998764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.82  E-value=6e-18  Score=193.45  Aligned_cols=298  Identities=12%  Similarity=0.089  Sum_probs=199.0

Q ss_pred             cceeccCCeEEEEec-cCCCCcEEEEEEecCCCcceeccccceEEeCCCCCccc---------Cceee--cCCCCE-EEE
Q 004971          271 WPCWVDESTLFFHRK-SEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAF---------TPATS--PGNNKF-IAV  337 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~-~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~s--p~dG~~-la~  337 (721)
                      .++|++| .++|... ...++...||.. ..+ +       ..++++.+...+.         .+.|+  | ||++ |+|
T Consensus        28 ~~~~s~~-~~~~~~~~~~~~~~~~l~~~-~~~-~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP-Dg~~~la~   96 (662)
T 3azo_A           28 CVGAVGD-EVWWVAPRPAEAGRATLVRR-RAD-G-------AEESALPAPWNVRNRVFEYSGFPWAGVPRP-AGGPLLVF   96 (662)
T ss_dssp             EEEEETT-EEEEEEEETTTTTEEEEEEE-CTT-S-------CEEESSCTTCCBCCCGGGTCCCCEEEECCS-SSSCEEEE
T ss_pred             eeEEcCC-eEEEEecCcccCCcEEEEEE-CCC-C-------CcceeCCCCccccccccccCCccceeeeec-CCCeEEEE
Confidence            4678877 5555433 244677889955 333 2       5677776654444         55565  9 9999 888


Q ss_pred             EEecCCCCeeeEEEEECC--C-CceEEeecccC--CCCcccCcEEcCCCCEEEEEEeeCCCC-CCCCcceeEEEeccC--
Q 004971          338 ATRRPTSSYRHIELFDLV--K-NKFIELTRFVS--PKTHHLNPFISPDSSRVGYHKCRGGST-REDGNNQLLLENIKS--  409 (721)
Q Consensus       338 ~~~~~g~~~~~l~l~dl~--t-g~~~~l~~~~~--~~~~~~~~~~Spdg~~l~~~~~~~~~~-~~~~~~~l~~~~~~~--  409 (721)
                      ....    +..||++++.  + ++.+.+.....  +......++|||||++|++.+.+.... .......++++++.+  
T Consensus        97 ~~~~----~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  172 (662)
T 3azo_A           97 THFG----DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA  172 (662)
T ss_dssp             EBTT----TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred             EECC----CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence            6533    3459999987  4 66666653211  234566899999999999988763110 001125688888876  


Q ss_pred             ----CCC-cce-ecccCCCCceeCcCCCEEEEEe-C--------CcEEEEECC-CC---ceEEEee---cCceeeEEcCC
Q 004971          410 ----PLP-DIS-LFRFDGSFPSFSPKGDRIAFVE-F--------PGVYVVNSD-GS---NRRQVYF---KNAFSTVWDPV  467 (721)
Q Consensus       410 ----~~~-~~~-~~~~~~~~~~~SpDG~~la~~~-~--------~~l~v~d~~-~g---~~~~l~~---~~~~~~~~spd  467 (721)
                          +.. .+. ........++|||||++|++.. .        ..|+++|++ ++   +.+.+..   ..+..+.||||
T Consensus       173 ~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spd  252 (662)
T 3azo_A          173 AADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPD  252 (662)
T ss_dssp             TTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTT
T ss_pred             cccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCC
Confidence                321 222 1112234689999999999984 2        379999998 57   5566652   46678999999


Q ss_pred             CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCC---------cceEEccCCCEEEEEEeeCCceeEE
Q 004971          468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNN---------AFPSVSPDGKWIVFRSTRTGYKNLY  538 (721)
Q Consensus       468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~SpDg~~l~~~s~~~g~~~l~  538 (721)
                      |+ +++.+.      .++...||.++..++    ..+.++......         ..++|+||++.++ .... +..+||
T Consensus       253 g~-l~~~~~------~~~~~~l~~~~~~~~----~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~-~~~~-~~~~l~  319 (662)
T 3azo_A          253 GS-LIVATD------RTGWWNLHRVDPATG----AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV-VHGK-GAAVLG  319 (662)
T ss_dssp             SC-EEEEEC------TTSSCEEEEECTTTC----CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE-EEBS-SSCEEE
T ss_pred             Ce-EEEEEC------CCCCeEEEEEECCCC----ceeecccccccccCccccccCceEeEeCCCEEEE-EEEc-CccEEE
Confidence            99 777663      345678999987654    666776654222         3567778887554 4445 778999


Q ss_pred             EEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971          539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ  603 (721)
Q Consensus       539 ~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  603 (721)
                      ++|+++++   ++.++.+...+.. .|++|++.+++.....   .....||++|+++++.++++.
T Consensus       320 ~~d~~~~~---~~~l~~~~~~~~~-~~s~~~~~~~~~~~~~---~~~~~i~~~d~~~g~~~~l~~  377 (662)
T 3azo_A          320 ILDPESGE---LVDAAGPWTEWAA-TLTVSGTRAVGVAASP---RTAYEVVELDTVTGRARTIGA  377 (662)
T ss_dssp             EEETTTTE---EEECCSSCCEEEE-EEEEETTEEEEEEEET---TEEEEEEEEETTTCCEEEEES
T ss_pred             EEECCCCc---EEEecCCCCeEEE-EEecCCCEEEEEEcCC---CCCCEEEEEECCCCceEEeec
Confidence            99998887   6777765443332 2388898888877654   345689999999998888764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.82  E-value=1.8e-17  Score=173.35  Aligned_cols=270  Identities=11%  Similarity=0.082  Sum_probs=184.2

Q ss_pred             cccCceeecCCCCEEEEEEecCC--CCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCC
Q 004971          321 HAFTPATSPGNNKFIAVATRRPT--SSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDG  398 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g--~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~  398 (721)
                      ....++++| ||+++++......  ..+..|++||+.+++.......   ......++|+|||+++++.....       
T Consensus        42 ~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~-------  110 (353)
T 3vgz_A           42 GAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN---DLKPFGATINNTTQTLWFGNTVN-------  110 (353)
T ss_dssp             SEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE---SSCCCSEEEETTTTEEEEEETTT-------
T ss_pred             CccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec---CCCcceEEECCCCCEEEEEecCC-------
Confidence            345789999 9999977653311  1256799999999875443322   33466789999999888765433       


Q ss_pred             cceeEEEeccCCCCcceecccC------------CCCceeCcCCCEEEEEe---CCcEEEEECCCCceEEEe---ecCce
Q 004971          399 NNQLLLENIKSPLPDISLFRFD------------GSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNRRQVY---FKNAF  460 (721)
Q Consensus       399 ~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~~~l~---~~~~~  460 (721)
                       ..++++++.++... ......            ...++|+|||+++++..   ...|++||+.+++.....   ...+.
T Consensus       111 -~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  188 (353)
T 3vgz_A          111 -SAVTAIDAKTGEVK-GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMST  188 (353)
T ss_dssp             -TEEEEEETTTCCEE-EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCC
T ss_pred             -CEEEEEeCCCCeeE-EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccc
Confidence             35677776654221 111110            23469999999988874   567999999988765443   23467


Q ss_pred             eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC----CCCcceEEccCCCEEEEEEeeCCcee
Q 004971          461 STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG----KNNAFPSVSPDGKWIVFRSTRTGYKN  536 (721)
Q Consensus       461 ~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~SpDg~~l~~~s~~~g~~~  536 (721)
                      .+.|+|||++|++..       .++.+.+  ++....   .....+....    .....++|+|||++|++....  ...
T Consensus       189 ~~~~s~dg~~l~~~~-------~~~~i~~--~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~  254 (353)
T 3vgz_A          189 GLALDSEGKRLYTTN-------ADGELIT--IDTADN---KILSRKKLLDDGKEHFFINISLDTARQRAFITDSK--AAE  254 (353)
T ss_dssp             CCEEETTTTEEEEEC-------TTSEEEE--EETTTT---EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS--SSE
T ss_pred             eEEECCCCCEEEEEc-------CCCeEEE--EECCCC---eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC--CCE
Confidence            899999999999875       2444544  455443   1223333311    233457999999999877642  468


Q ss_pred             EEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEEC
Q 004971          537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFS  616 (721)
Q Consensus       537 l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~S  616 (721)
                      |++||+.+++.  +..+..+.  ...++|+|||++|+++....      ..|++||+.+++......  .......++|+
T Consensus       255 v~~~d~~~~~~--~~~~~~~~--~~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s  322 (353)
T 3vgz_A          255 VLVVDTRNGNI--LAKVAAPE--SLAVLFNPARNEAYVTHRQA------GKVSVIDAKSYKVVKTFD--TPTHPNSLALS  322 (353)
T ss_dssp             EEEEETTTCCE--EEEEECSS--CCCEEEETTTTEEEEEETTT------TEEEEEETTTTEEEEEEE--CCSEEEEEEEC
T ss_pred             EEEEECCCCcE--EEEEEcCC--CceEEECCCCCEEEEEECCC------CeEEEEECCCCeEEEEEe--cCCCCCeEEEc
Confidence            99999998885  33443322  25689999999988877542      389999999887766554  34466789999


Q ss_pred             CCCCEEEEEEecC
Q 004971          617 PDGKSIVFTSDYG  629 (721)
Q Consensus       617 pDG~~l~~~~~~~  629 (721)
                      |||++|+++....
T Consensus       323 ~dg~~l~v~~~~~  335 (353)
T 3vgz_A          323 ADGKTLYVSVKQK  335 (353)
T ss_dssp             TTSCEEEEEEECC
T ss_pred             CCCCEEEEEEccc
Confidence            9999988877653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.82  E-value=1.5e-18  Score=182.95  Aligned_cols=287  Identities=11%  Similarity=0.059  Sum_probs=203.1

Q ss_pred             CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCC
Q 004971          318 PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRED  397 (721)
Q Consensus       318 ~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~  397 (721)
                      +...+..++|+| ||++|++..     .+..|++||+.+++...+.....+...+..++|+|+++.|+....++.     
T Consensus         7 ~~~~i~~~~~s~-~~~~l~~~~-----~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~-----   75 (372)
T 1k8k_C            7 LVEPISCHAWNK-DRTQIAICP-----NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN-----   75 (372)
T ss_dssp             CSSCCCEEEECT-TSSEEEEEC-----SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSC-----
T ss_pred             cCCCeEEEEECC-CCCEEEEEe-----CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCe-----
Confidence            444677899999 999988843     345699999998864444445566778889999999999998765544     


Q ss_pred             CcceeEEEeccCCCC--cc--eecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCce----EEEe---ecCceeeEEc
Q 004971          398 GNNQLLLENIKSPLP--DI--SLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNR----RQVY---FKNAFSTVWD  465 (721)
Q Consensus       398 ~~~~l~~~~~~~~~~--~~--~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~----~~l~---~~~~~~~~~s  465 (721)
                          +.++++.....  ..  .........+.|+|+|++|+... ++.|.+|++..+..    ..+.   ...+..+.|+
T Consensus        76 ----i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~  151 (372)
T 1k8k_C           76 ----AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH  151 (372)
T ss_dssp             ----EEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred             ----EEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc
Confidence                45555544311  11  11222344579999999999885 78899999987763    2222   4567899999


Q ss_pred             CCCCeEEEEecCCCCCCCCCcEEEEEEEccCC-------------CCccceEEcccCCCCCcceEEccCCCEEEEEEeeC
Q 004971          466 PVREAVVYTSGGPEFASESSEVDIISINVDDV-------------DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT  532 (721)
Q Consensus       466 pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~  532 (721)
                      |+++.|+..+       .++.+.+|++.....             ........+..+...+..++|+|||++|++.+.  
T Consensus       152 ~~~~~l~~~~-------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--  222 (372)
T 1k8k_C          152 PNSVLLAAGS-------CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH--  222 (372)
T ss_dssp             TTSSEEEEEE-------TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET--
T ss_pred             CCCCEEEEEc-------CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC--
Confidence            9999999886       578899998642110             001245556566667888999999999998886  


Q ss_pred             CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC--CceE-----------
Q 004971          533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG--TGLR-----------  599 (721)
Q Consensus       533 g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~--~~~~-----------  599 (721)
                       +..|++||+.+++.  +..+..+...+..++|+|||+.|+.+ .++       .|++|++..  ++..           
T Consensus       223 -d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~-------~i~i~~~~~~~~~~~~~~~~~~~~~~  291 (372)
T 1k8k_C          223 -DSTVCLADADKKMA--VATLASETLPLLAVTFITESSLVAAG-HDC-------FPVLFTYDSAAGKLSFGGRLDVPKQS  291 (372)
T ss_dssp             -TTEEEEEEGGGTTE--EEEEECSSCCEEEEEEEETTEEEEEE-TTS-------SCEEEEEETTTTEEEECCCCCCC---
T ss_pred             -CCEEEEEECCCCce--eEEEccCCCCeEEEEEecCCCEEEEE-eCC-------eEEEEEccCcCceEEEeeccCccccc
Confidence             77899999988875  55666666667899999999977766 443       688888866  4211           


Q ss_pred             ---------------------------EeeecCCCCCcCCeEEC-CCC---CEEEEEEecCCCcCCCCCCCCCCCCCccE
Q 004971          600 ---------------------------KLIQSGSAGRANHPYFS-PDG---KSIVFTSDYGGISAEPISTPHQYQPYGEI  648 (721)
Q Consensus       600 ---------------------------~l~~~~~~~~~~~~~~S-pDG---~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  648 (721)
                                                 .....+|...+..++|. +||   ++|+..+.++                 .|
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg-----------------~i  354 (372)
T 1k8k_C          292 SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG-----------------GM  354 (372)
T ss_dssp             -----CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTS-----------------EE
T ss_pred             hhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCC-----------------ce
Confidence                                       11111366677788755 777   8888777665                 49


Q ss_pred             EEEEcCCC
Q 004971          649 FKIKLDGS  656 (721)
Q Consensus       649 ~~~d~~~~  656 (721)
                      .+|+++++
T Consensus       355 ~~W~~~~~  362 (372)
T 1k8k_C          355 SIWDVRSL  362 (372)
T ss_dssp             EEEEHHHH
T ss_pred             EEEEecCh
Confidence            99998654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.82  E-value=2.8e-18  Score=196.20  Aligned_cols=305  Identities=11%  Similarity=0.040  Sum_probs=197.4

Q ss_pred             CCCcccCceeecCCCCEEEEEEecC-CCCeeeEEEEECCCCceEEeecccCCCCccc---------CcEEc--CCCCE-E
Q 004971          318 PGLHAFTPATSPGNNKFIAVATRRP-TSSYRHIELFDLVKNKFIELTRFVSPKTHHL---------NPFIS--PDSSR-V  384 (721)
Q Consensus       318 ~~~~~~~~~~sp~dG~~la~~~~~~-g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~---------~~~~S--pdg~~-l  384 (721)
                      +...+..+++++   +.++|...+. ......||++ ..+++.+++...   ...+.         .+.|+  |||++ |
T Consensus        22 ~~~~~~~~~~s~---~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~SPDg~~~l   94 (662)
T 3azo_A           22 RSGRPACVGAVG---DEVWWVAPRPAEAGRATLVRR-RADGAEESALPA---PWNVRNRVFEYSGFPWAGVPRPAGGPLL   94 (662)
T ss_dssp             TCSCCEEEEEET---TEEEEEEEETTTTTEEEEEEE-CTTSCEEESSCT---TCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred             cCCccceeEEcC---CeEEEEecCcccCCcEEEEEE-CCCCCcceeCCC---CccccccccccCCccceeeeecCCCeEE
Confidence            344566788866   4677776532 1223445555 455665555432   22222         45565  99999 8


Q ss_pred             EEEEeeCCCCCCCCcceeEEEecc----CCCCcceec-----ccCCCCceeCcCCCEEEEEeC-----------CcEEEE
Q 004971          385 GYHKCRGGSTREDGNNQLLLENIK----SPLPDISLF-----RFDGSFPSFSPKGDRIAFVEF-----------PGVYVV  444 (721)
Q Consensus       385 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~-----~~~~~~~~~SpDG~~la~~~~-----------~~l~v~  444 (721)
                      +|.... .       .+||+.++.    +....++..     ......++|||||++|++...           ..|++|
T Consensus        95 a~~~~~-~-------~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~  166 (662)
T 3azo_A           95 VFTHFG-D-------QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV  166 (662)
T ss_dssp             EEEBTT-T-------CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred             EEEECC-C-------CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence            886543 2       568988876    332333331     122345799999999999842           479999


Q ss_pred             ECCC------CceEEEe-e--cCceeeEEcCCCCeEEEEecCC-CCCCCCCcEEEEEEEccCCCCccceEEcccC-CCCC
Q 004971          445 NSDG------SNRRQVY-F--KNAFSTVWDPVREAVVYTSGGP-EFASESSEVDIISINVDDVDGVSAVRRLTTN-GKNN  513 (721)
Q Consensus       445 d~~~------g~~~~l~-~--~~~~~~~~spdg~~la~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~-~~~~  513 (721)
                      ++++      ++.+.+. .  ..+..+.|||||++|++.+... ...  .....||.++.++.......+.+... ...+
T Consensus       167 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~--~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~  244 (662)
T 3azo_A          167 PLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMP--WEGTELKTARVTEDGRFADTRTLLGGPEEAI  244 (662)
T ss_dssp             ETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCT--TTCEEEEEEEECTTSCEEEEEEEEEETTBCE
T ss_pred             ECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCC--CCCcEEEEEEECCCCcccccEEeCCCCCceE
Confidence            9998      7777776 3  3456789999999999987421 110  12345555555421000144555543 4567


Q ss_pred             cceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcC---------ceeeEEccCCCEEEEEEccCCCCCC
Q 004971          514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS---------DTMCNWSPDGEWIAFASDRDNPGSG  584 (721)
Q Consensus       514 ~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~---------~~~~~~SpDG~~l~~~~~~~~~~~~  584 (721)
                      ..++|||||+ |++.+++++..+||++|+++++   ...++.+...         ...++|+|||+.++.... .     
T Consensus       245 ~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~-----  314 (662)
T 3azo_A          245 AQAEWAPDGS-LIVATDRTGWWNLHRVDPATGA---ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G-----  314 (662)
T ss_dssp             EEEEECTTSC-EEEEECTTSSCEEEEECTTTCC---EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S-----
T ss_pred             cceEECCCCe-EEEEECCCCCeEEEEEECCCCc---eeecccccccccCccccccCceEeEeCCCEEEEEEEc-C-----
Confidence            8899999999 8888877766799999998887   5666654322         245677788885555443 2     


Q ss_pred             ceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccC
Q 004971          585 SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN  664 (721)
Q Consensus       585 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~  664 (721)
                      ...||.+|+++++.++++.  +...+..+ |++||+.+++.......             ...||.+|+++++.++|+..
T Consensus       315 ~~~l~~~d~~~~~~~~l~~--~~~~~~~~-~s~~~~~~~~~~~~~~~-------------~~~i~~~d~~~g~~~~l~~~  378 (662)
T 3azo_A          315 AAVLGILDPESGELVDAAG--PWTEWAAT-LTVSGTRAVGVAASPRT-------------AYEVVELDTVTGRARTIGAR  378 (662)
T ss_dssp             SCEEEEEETTTTEEEECCS--SCCEEEEE-EEEETTEEEEEEEETTE-------------EEEEEEEETTTCCEEEEESC
T ss_pred             ccEEEEEECCCCcEEEecC--CCCeEEEE-EecCCCEEEEEEcCCCC-------------CCEEEEEECCCCceEEeecC
Confidence            2478989998888776653  33333322 37888888887765443             24699999999999999864


Q ss_pred             C
Q 004971          665 S  665 (721)
Q Consensus       665 ~  665 (721)
                      .
T Consensus       379 ~  379 (662)
T 3azo_A          379 H  379 (662)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.81  E-value=1.5e-17  Score=174.81  Aligned_cols=281  Identities=11%  Similarity=0.062  Sum_probs=198.2

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      ..+|+|||+++++  ...++.+.+|.+....         ....+..+...+..++|+| ++++|+...     .+..|.
T Consensus        37 ~~~~s~~~~~l~~--~~~dg~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~~~-~~~~l~s~~-----~dg~i~   99 (369)
T 3zwl_B           37 QVKYNKEGDLLFS--CSKDSSASVWYSLNGE---------RLGTLDGHTGTIWSIDVDC-FTKYCVTGS-----ADYSIK   99 (369)
T ss_dssp             EEEECTTSCEEEE--EESSSCEEEEETTTCC---------EEEEECCCSSCEEEEEECT-TSSEEEEEE-----TTTEEE
T ss_pred             EEEEcCCCCEEEE--EeCCCEEEEEeCCCch---------hhhhhhhcCCcEEEEEEcC-CCCEEEEEe-----CCCeEE
Confidence            4589999987664  3337889999543222         4555666776788999999 999998754     345699


Q ss_pred             EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC--Ccceec-----------
Q 004971          351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL--PDISLF-----------  417 (721)
Q Consensus       351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~-----------  417 (721)
                      +||+.+++......   +...+..+.|+|+++.|+....+....  .  ..+.++++....  ..+...           
T Consensus       100 iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~--~--g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  172 (369)
T 3zwl_B          100 LWDVSNGQCVATWK---SPVPVKRVEFSPCGNYFLAILDNVMKN--P--GSINIYEIERDSATHELTKVSEEPIHKIITH  172 (369)
T ss_dssp             EEETTTCCEEEEEE---CSSCEEEEEECTTSSEEEEEECCBTTB--C--CEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred             EEECCCCcEEEEee---cCCCeEEEEEccCCCEEEEecCCccCC--C--CEEEEEEecCCccceeecccccceeeeccCC
Confidence            99999987544433   356678899999999999876651100  0  134445443321  111100           


Q ss_pred             cc--CCCCceeCcCCCEEEEEe-CCcEEEEECCC-CceEE-Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEE
Q 004971          418 RF--DGSFPSFSPKGDRIAFVE-FPGVYVVNSDG-SNRRQ-VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDII  490 (721)
Q Consensus       418 ~~--~~~~~~~SpDG~~la~~~-~~~l~v~d~~~-g~~~~-l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~  490 (721)
                      ..  ....++|+|+|+.|+... ++.|++||+.+ ++... +.  ...+..+.|+|+++.|+..+       .++.+.+|
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~d~~i~v~  245 (369)
T 3zwl_B          173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS-------RDTNSFLV  245 (369)
T ss_dssp             TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE-------TTSEEEEE
T ss_pred             cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec-------CCceEEEE
Confidence            00  234568999999998885 68899999987 44333 32  45788999999999999886       46788888


Q ss_pred             EEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC-----------CceeEEEEECCCCcccceEECcCCCcC
Q 004971          491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT-----------GYKNLYIMDAEGGEGYGLHRLTEGPWS  559 (721)
Q Consensus       491 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~-----------g~~~l~~~d~~~g~~~~~~~l~~~~~~  559 (721)
                      ++....     ....+. .......++|+|+++++++.....           +...+++||..+++.  +..+..+...
T Consensus       246 d~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~  317 (369)
T 3zwl_B          246 DVSTLQ-----VLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE--IGRVQGHFGP  317 (369)
T ss_dssp             ETTTCC-----EEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE--EEEEECCSSC
T ss_pred             ECCCCc-----eeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc--hhheecccCc
Confidence            765432     333343 445677899999999999987632           122799999998875  5666667777


Q ss_pred             ceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971          560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG  597 (721)
Q Consensus       560 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~  597 (721)
                      +..++|+|||++|+.++.++       .|++|++..+.
T Consensus       318 v~~~~~s~~~~~l~s~~~dg-------~v~iw~~~~~~  348 (369)
T 3zwl_B          318 LNTVAISPQGTSYASGGEDG-------FIRLHHFEKSY  348 (369)
T ss_dssp             EEEEEECTTSSEEEEEETTS-------EEEEEEECHHH
T ss_pred             EEEEEECCCCCEEEEEcCCC-------eEEEEECcccc
Confidence            88999999999999998875       89999987653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.81  E-value=2.1e-18  Score=184.84  Aligned_cols=267  Identities=13%  Similarity=0.079  Sum_probs=205.6

Q ss_pred             cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--ceecccCCCCceeCcCCCEEEEEe-CCcEE
Q 004971          366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSPKGDRIAFVE-FPGVY  442 (721)
Q Consensus       366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~SpDG~~la~~~-~~~l~  442 (721)
                      .+|...+..++|+|+++.|+..+.++.         +.++++..+...  +.........++|+|+|+.|+..+ ++.|.
T Consensus       105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~---------i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~  175 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPVFSVMVSASEDAT---------IKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK  175 (410)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSC---------EEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred             cccCCcEEEEEEcCCCCEEEEEeCCCe---------EEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            345677888999999999988776665         566666554322  121223345579999999988885 78999


Q ss_pred             EEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEc
Q 004971          443 VVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVS  519 (721)
Q Consensus       443 v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S  519 (721)
                      +||+.+++.....   ...+..+.|+|+|+.|+..+       .++.+.+|++....     ....+..+...+..+.|+
T Consensus       176 iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s-------~D~~i~~wd~~~~~-----~~~~~~~h~~~v~~~~~~  243 (410)
T 1vyh_C          176 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS-------RDKTIKMWEVQTGY-----CVKTFTGHREWVRMVRPN  243 (410)
T ss_dssp             EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE-------TTSEEEEEETTTCC-----EEEEEECCSSCEEEEEEC
T ss_pred             EEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEe-------CCCeEEEEECCCCc-----EEEEEeCCCccEEEEEEC
Confidence            9999887754433   45788999999999999886       57899999876533     556677777777889999


Q ss_pred             cCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccC--------------------CCEEEEEEccC
Q 004971          520 PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD--------------------GEWIAFASDRD  579 (721)
Q Consensus       520 pDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD--------------------G~~l~~~~~~~  579 (721)
                      |||+.|+..+.   +..|.+||+.+++.  ...+..+...+..++|+|+                    |.+|+.++.++
T Consensus       244 ~~g~~l~s~s~---D~~v~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~  318 (410)
T 1vyh_C          244 QDGTLIASCSN---DQTVRVWVVATKEC--KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK  318 (410)
T ss_dssp             TTSSEEEEEET---TSCEEEEETTTCCE--EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred             CCCCEEEEEcC---CCeEEEEECCCCce--eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence            99999998887   78899999998875  5556666677788999997                    67888888775


Q ss_pred             CCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC-e
Q 004971          580 NPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD-L  658 (721)
Q Consensus       580 ~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~  658 (721)
                             .|++||+.+++...... ++...+..++|+|+|++|+..+.++                 .|++||+.+++ .
T Consensus       319 -------~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D~-----------------~i~vwd~~~~~~~  373 (410)
T 1vyh_C          319 -------TIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDK-----------------TLRVWDYKNKRCM  373 (410)
T ss_dssp             -------EEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSCEEEEETTT-----------------EEEEECCTTSCCC
T ss_pred             -------eEEEEECCCCceEEEEE-CCCCcEEEEEEcCCCCEEEEEeCCC-----------------eEEEEECCCCceE
Confidence                   89999999887655444 3777788999999999998777654                 49999997765 5


Q ss_pred             EEeccCCCCCCCceecCC--cCCcccc
Q 004971          659 KRLTQNSFEDGTPAWGPR--FIRPVDV  683 (721)
Q Consensus       659 ~~lt~~~~~~~~~~~sp~--~l~~~~~  683 (721)
                      ..+..|...+...+|+|+  .++.+..
T Consensus       374 ~~~~~h~~~v~~l~~~~~~~~l~sgs~  400 (410)
T 1vyh_C          374 KTLNAHEHFVTSLDFHKTAPYVVTGSV  400 (410)
T ss_dssp             EEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred             EEEcCCCCcEEEEEEcCCCCEEEEEeC
Confidence            677778878889999997  4555543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.81  E-value=1.2e-17  Score=192.24  Aligned_cols=304  Identities=11%  Similarity=-0.003  Sum_probs=205.6

Q ss_pred             ecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeeccc----CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeE
Q 004971          328 SPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFV----SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLL  403 (721)
Q Consensus       328 sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~----~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~  403 (721)
                      +| ||++++|.....+.....|++.+..+++.+.+....    .+......++|||||++|+|.....+...    ..|+
T Consensus        80 ~~-dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~----~~i~  154 (710)
T 2xdw_A           80 FK-KGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDW----VTIK  154 (710)
T ss_dssp             EE-ETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSC----EEEE
T ss_pred             EE-ECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCce----EEEE
Confidence            48 999999988776655567899988777665553221    11224567899999999999888765211    3789


Q ss_pred             EEeccCCCCc-ceecccCCCCceeCcCCCEEEEEe-CC----------------cEEEEECCCCce--EEEee-----cC
Q 004971          404 LENIKSPLPD-ISLFRFDGSFPSFSPKGDRIAFVE-FP----------------GVYVVNSDGSNR--RQVYF-----KN  458 (721)
Q Consensus       404 ~~~~~~~~~~-~~~~~~~~~~~~~SpDG~~la~~~-~~----------------~l~v~d~~~g~~--~~l~~-----~~  458 (721)
                      +.++.++... ..........++|||||+.|+|.. ..                .|+++++.++..  +.+..     ..
T Consensus       155 v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~  234 (710)
T 2xdw_A          155 FMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKW  234 (710)
T ss_dssp             EEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred             EEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeE
Confidence            9998776321 122222345689999999999984 22                399999988763  34431     12


Q ss_pred             ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC------CCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC
Q 004971          459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD------VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT  532 (721)
Q Consensus       459 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~  532 (721)
                      ...+.|||||++|++.+...    .+....||.++..+      +  ....+.+..+.... ...|+|||++|++.++.+
T Consensus       235 ~~~~~~SpDg~~l~~~~~~~----~~~~~~l~~~d~~~~~~~~~~--~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~  307 (710)
T 2xdw_A          235 MGGAELSDDGRYVLLSIREG----CDPVNRLWYCDLQQESNGITG--ILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRH  307 (710)
T ss_dssp             EEEEEECTTSCEEEEEEECS----SSSCCEEEEEEGGGSSSSSCS--SCCCEEEECSSSSC-EEEEEEETTEEEEEECTT
T ss_pred             EEEEEEcCCCCEEEEEEEcc----CCCccEEEEEECcccccccCC--ccceEEeeCCCCcE-EEEEeccCCEEEEEECCC
Confidence            45899999999999987421    11245666666653      1  01356666554333 346999999999998765


Q ss_pred             C-ceeEEEEECCCCcccceEECcCCCc--CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce-EEeeecCCCC
Q 004971          533 G-YKNLYIMDAEGGEGYGLHRLTEGPW--SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL-RKLIQSGSAG  608 (721)
Q Consensus       533 g-~~~l~~~d~~~g~~~~~~~l~~~~~--~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~  608 (721)
                      + ..+|+++|+++++....+.+..+..  .+..++|+++ .+|++.....    +...|+++++.+|+. +.+..  +.+
T Consensus       308 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~lv~~~~~~----g~~~l~~~~~~~g~~~~~l~~--~~~  380 (710)
T 2xdw_A          308 SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS-NFLVLCYLHD----VKNTLQLHDLATGALLKIFPL--EVG  380 (710)
T ss_dssp             CTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETT-TEEEEEEEET----TEEEEEEEETTTCCEEEEECC--CSS
T ss_pred             CCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcC-CEEEEEEEEC----CEEEEEEEECCCCCEEEecCC--CCc
Confidence            4 5689999998875322355554432  4567888855 4566666553    667899999966653 44432  345


Q ss_pred             CcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC--eEEecc
Q 004971          609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD--LKRLTQ  663 (721)
Q Consensus       609 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~lt~  663 (721)
                      .+..+.++||++.|++.......             ++.||.||+++++  .+.+..
T Consensus       381 ~v~~~~~s~d~~~l~~~~ss~~~-------------P~~i~~~d~~tg~~~~~~l~~  424 (710)
T 2xdw_A          381 SVVGYSGQKKDTEIFYQFTSFLS-------------PGIIYHCDLTKEELEPRVFRE  424 (710)
T ss_dssp             EEEEEECCTTCSEEEEEEECSSC-------------CCEEEEEETTSSSCCCEEEEE
T ss_pred             eEEEEecCCCCCEEEEEEeCCCC-------------CCEEEEEECCCCccceEEeee
Confidence            56678899999998887655433             3579999999888  666665

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.81  E-value=3e-18  Score=175.66  Aligned_cols=260  Identities=13%  Similarity=0.051  Sum_probs=191.9

Q ss_pred             CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcEEE
Q 004971          367 SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYV  443 (721)
Q Consensus       367 ~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v  443 (721)
                      .+...+..++|+|||+.|+....++.         +.++++..+..  .+...........|+|++++|+..+ ++.|.+
T Consensus        11 ~h~~~V~~~~fsp~~~~l~s~~~dg~---------v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v   81 (304)
T 2ynn_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGR---------VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV   81 (304)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSE---------EEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCc---------EEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence            34667888999999999998775554         55566654421  1111222234578999999998885 788999


Q ss_pred             EECCCCceEE-Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc
Q 004971          444 VNSDGSNRRQ-VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP  520 (721)
Q Consensus       444 ~d~~~g~~~~-l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp  520 (721)
                      ||+.+++... +.  ...+..++|+|+++.|+..+       .++.++||++.....    ....+..+...+..++|+|
T Consensus        82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-------~D~~v~lWd~~~~~~----~~~~~~~h~~~v~~v~~~p  150 (304)
T 2ynn_A           82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS-------DDLTVKLWNWENNWA----LEQTFEGHEHFVMCVAFNP  150 (304)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE-------TTSCEEEEEGGGTTE----EEEEECCCCSCEEEEEECT
T ss_pred             EECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEEC-------CCCeEEEEECCCCcc----hhhhhcccCCcEEEEEECC
Confidence            9999887543 33  55788999999999999886       578999999865431    3445666777788899999


Q ss_pred             -CCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEcc--CCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971          521 -DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSP--DGEWIAFASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       521 -Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                       |++.|+..+.   +..|.+||+.++..  ...+. .+...+..+.|+|  |+++|+.++.++       .|.+||+.++
T Consensus       151 ~~~~~l~sgs~---D~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~-------~i~iWd~~~~  218 (304)
T 2ynn_A          151 KDPSTFASGCL---DRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKPYMITASDDL-------TIKIWDYQTK  218 (304)
T ss_dssp             TCTTEEEEEET---TSEEEEEETTCSSC--SEEEECCCTTCEEEEEECCSTTCCEEEEEETTS-------EEEEEETTTT
T ss_pred             CCCCEEEEEeC---CCeEEEEECCCCCc--cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC-------eEEEEeCCCC
Confidence             6788888876   78999999987654  33333 2334456677876  788899888875       8999999988


Q ss_pred             ceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EEeccCCCCCCCceecC
Q 004971          597 GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLTQNSFEDGTPAWGP  675 (721)
Q Consensus       597 ~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt~~~~~~~~~~~sp  675 (721)
                      +...... ++...+..++|+|++++|+..+.++                 .|.+||+.+++. +.+..+.......+|+|
T Consensus       219 ~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~Dg-----------------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~  280 (304)
T 2ynn_A          219 SCVATLE-GHMSNVSFAVFHPTLPIIISGSEDG-----------------TLKIWNSSTYKVEKTLNVGLERSWCIATHP  280 (304)
T ss_dssp             EEEEEEE-CCSSCEEEEEECSSSSEEEEEETTS-----------------CEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred             ccceeeC-CCCCCEEEEEECCCCCEEEEEcCCC-----------------eEEEEECCCCceeeeccCCCccEEEEEECC
Confidence            7665544 3777888999999999988877765                 399999988765 46665555566778777


Q ss_pred             C
Q 004971          676 R  676 (721)
Q Consensus       676 ~  676 (721)
                      .
T Consensus       281 ~  281 (304)
T 2ynn_A          281 T  281 (304)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.81  E-value=2.8e-18  Score=182.04  Aligned_cols=294  Identities=13%  Similarity=0.121  Sum_probs=196.3

Q ss_pred             EEeCCCCCcccCceeecCCC-CEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcC-CCCEEEEEEee
Q 004971          313 QRVTPPGLHAFTPATSPGNN-KFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISP-DSSRVGYHKCR  390 (721)
Q Consensus       313 ~~~~~~~~~~~~~~~sp~dG-~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~  390 (721)
                      ..+..+...+..++|+| +| ++|+....     +..|.+||+.+++.........+...+..++|+| +++.|+....+
T Consensus        67 ~~~~~h~~~v~~~~~~~-~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  140 (383)
T 3ei3_B           67 RTASPFDRRVTSLEWHP-THPTTVAVGSK-----GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR  140 (383)
T ss_dssp             EEECCCSSCEEEEEECS-SCTTEEEEEEB-----TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred             EeccCCCCCEEEEEECC-CCCCEEEEEcC-----CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence            34455666778899999 99 77777543     3459999999887655554345677888999999 56777765544


Q ss_pred             CCCCCCCCcceeEEEeccCCCCcceecc------cCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCcee
Q 004971          391 GGSTREDGNNQLLLENIKSPLPDISLFR------FDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFS  461 (721)
Q Consensus       391 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~  461 (721)
                      +         .+.++++.+.  .+....      .....++|+|+++.|+..+ ++.|++||+.+.....+.  ...+..
T Consensus       141 ~---------~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~  209 (383)
T 3ei3_B          141 G---------ATTLRDFSGS--VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTH  209 (383)
T ss_dssp             T---------EEEEEETTSC--EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEE
T ss_pred             C---------EEEEEECCCC--ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEE
Confidence            3         3566666543  111111      1234578999999998885 789999999655555554  567889


Q ss_pred             eEEcCCCC-eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc-CCCEEEEEEeeCCceeEEE
Q 004971          462 TVWDPVRE-AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP-DGKWIVFRSTRTGYKNLYI  539 (721)
Q Consensus       462 ~~~spdg~-~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp-Dg~~l~~~s~~~g~~~l~~  539 (721)
                      ++|+|+++ .|+..+       .++.+.||++.....  .........+...+..++|+| ||++|+..+.   +..|++
T Consensus       210 ~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~---d~~i~i  277 (383)
T 3ei3_B          210 AEFNPRCDWLMATSS-------VDATVKLWDLRNIKD--KNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ---RNEIRV  277 (383)
T ss_dssp             EEECSSCTTEEEEEE-------TTSEEEEEEGGGCCS--TTCEEEEEECSSCEEEEEECTTTSCEEEEEES---SSEEEE
T ss_pred             EEECCCCCCEEEEEe-------CCCEEEEEeCCCCCc--ccceEEEecCCCceEEEEEcCCCCCEEEEEcC---CCcEEE
Confidence            99999999 566654       578899998876321  012222224566788899999 9999998887   789999


Q ss_pred             EECCCCcccceEECcCCC------cCceeeEEccCCCEEEEEEccCC--CCCCceeEEEEecCCCceEEeeecC-CCCCc
Q 004971          540 MDAEGGEGYGLHRLTEGP------WSDTMCNWSPDGEWIAFASDRDN--PGSGSFEMYLIHPNGTGLRKLIQSG-SAGRA  610 (721)
Q Consensus       540 ~d~~~g~~~~~~~l~~~~------~~~~~~~~SpDG~~l~~~~~~~~--~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~  610 (721)
                      ||+.+++.  +..+..+.      .......|+|++..+++.....+  ..+....|++||+.+++........ +...+
T Consensus       278 wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~  355 (383)
T 3ei3_B          278 YSSYDWSK--PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGII  355 (383)
T ss_dssp             EETTBTTS--CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCC
T ss_pred             EECCCCcc--ccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceE
Confidence            99998764  22222111      11123466776666655432100  0012348999999988765544321 23445


Q ss_pred             CCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971          611 NHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       611 ~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                      ..++|+|||++|+..+ ++                 .|.+||+++
T Consensus       356 ~~~~~s~~g~~l~s~s-d~-----------------~i~iw~~~~  382 (383)
T 3ei3_B          356 SLNKFSPTGDVLASGM-GF-----------------NILIWNRED  382 (383)
T ss_dssp             CEEEECTTSSEEEEEE-TT-----------------EEEEEECC-
T ss_pred             EEEEEecCccEEEEec-CC-----------------cEEEEecCC
Confidence            6669999999998875 43                 499999864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.81  E-value=2.3e-17  Score=176.22  Aligned_cols=277  Identities=12%  Similarity=0.050  Sum_probs=192.9

Q ss_pred             eecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEe
Q 004971          327 TSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLEN  406 (721)
Q Consensus       327 ~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~  406 (721)
                      +++ +++.++...     .+..|++||+.+++...+... .+...+..++|+|+|+.|+....++.         +.+++
T Consensus        99 ~~~-s~~~l~~~~-----~d~~v~lw~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~---------i~iwd  162 (401)
T 4aez_A           99 LDW-SNLNVVAVA-----LERNVYVWNADSGSVSALAET-DESTYVASVKWSHDGSFLSVGLGNGL---------VDIYD  162 (401)
T ss_dssp             EEE-CTTSEEEEE-----ETTEEEEEETTTCCEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTSC---------EEEEE
T ss_pred             Eee-cCCCEEEEE-----CCCeEEEeeCCCCcEeEeeec-CCCCCEEEEEECCCCCEEEEECCCCe---------EEEEE
Confidence            444 555566543     234599999999986555432 24667888999999999988765554         55666


Q ss_pred             ccCCCCccee--cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCC-ce-EEEe--ecCceeeEEcCCCCeEEEEecCCC
Q 004971          407 IKSPLPDISL--FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGS-NR-RQVY--FKNAFSTVWDPVREAVVYTSGGPE  479 (721)
Q Consensus       407 ~~~~~~~~~~--~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g-~~-~~l~--~~~~~~~~~spdg~~la~~~~~~~  479 (721)
                      +..+......  .......+.|  +++.|+..+ ++.|.+||+... .. ..+.  .+.+..+.|+|+++.|+..+    
T Consensus       163 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----  236 (401)
T 4aez_A          163 VESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG----  236 (401)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE----
T ss_pred             CcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe----
Confidence            6544221111  1112233455  567777774 789999999843 32 2333  56788999999999999987    


Q ss_pred             CCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcC
Q 004971          480 FASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWS  559 (721)
Q Consensus       480 ~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~  559 (721)
                         .++.+.+|++....     ....+..+...+..++|+|++..+++......+..|++||+.+++.  +..+ .....
T Consensus       237 ---~d~~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~--~~~~-~~~~~  305 (401)
T 4aez_A          237 ---NDNVVQIWDARSSI-----PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR--VNTV-DAGSQ  305 (401)
T ss_dssp             ---TTSCEEEEETTCSS-----EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE--EEEE-ECSSC
T ss_pred             ---CCCeEEEccCCCCC-----ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE--EEEE-eCCCc
Confidence               56889999876532     4556666667888999999998887765433367899999998874  4444 34456


Q ss_pred             ceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee-ecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCC
Q 004971          560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI-QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPIST  638 (721)
Q Consensus       560 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~  638 (721)
                      +..++|+|+|+.|+.+....     ...|++|++.+++...+. ...+...+..++|+|||++|+..+.++         
T Consensus       306 v~~~~~s~~~~~l~~~~g~~-----dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg---------  371 (401)
T 4aez_A          306 VTSLIWSPHSKEIMSTHGFP-----DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE---------  371 (401)
T ss_dssp             EEEEEECSSSSEEEEEECTT-----TCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS---------
T ss_pred             EEEEEECCCCCeEEEEeecC-----CCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC---------
Confidence            78999999999999876321     128999999887655442 223677889999999999998876654         


Q ss_pred             CCCCCCCccEEEEEcCCCCe
Q 004971          639 PHQYQPYGEIFKIKLDGSDL  658 (721)
Q Consensus       639 ~~~~~~~~~l~~~d~~~~~~  658 (721)
                              .|.+|++.+++.
T Consensus       372 --------~i~iw~~~~~~~  383 (401)
T 4aez_A          372 --------NLKFWRVYDGDH  383 (401)
T ss_dssp             --------EEEEEECCC---
T ss_pred             --------cEEEEECCCCcc
Confidence                    499999988754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.81  E-value=1.4e-17  Score=177.37  Aligned_cols=239  Identities=14%  Similarity=0.098  Sum_probs=171.7

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      .+..++|+| ||++|+...     .+..|++||+.+++...  ....+...+..++|+|+++.|+..+.++.        
T Consensus       125 ~v~~v~~s~-dg~~l~s~~-----~d~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~p~~~~l~s~s~d~~--------  188 (393)
T 1erj_A          125 YIRSVCFSP-DGKFLATGA-----EDRLIRIWDIENRKIVM--ILQGHEQDIYSLDYFPSGDKLVSGSGDRT--------  188 (393)
T ss_dssp             BEEEEEECT-TSSEEEEEE-----TTSCEEEEETTTTEEEE--EECCCSSCEEEEEECTTSSEEEEEETTSE--------
T ss_pred             eEEEEEECC-CCCEEEEEc-----CCCeEEEEECCCCcEEE--EEccCCCCEEEEEEcCCCCEEEEecCCCc--------
Confidence            466889999 999998754     34569999999887433  34556777889999999999987665444        


Q ss_pred             eeEEEeccCCCCccee-cccCCCCceeCc-CCCEEEEEe-CCcEEEEECCCCceE-EEe---------ecCceeeEEcCC
Q 004971          401 QLLLENIKSPLPDISL-FRFDGSFPSFSP-KGDRIAFVE-FPGVYVVNSDGSNRR-QVY---------FKNAFSTVWDPV  467 (721)
Q Consensus       401 ~l~~~~~~~~~~~~~~-~~~~~~~~~~Sp-DG~~la~~~-~~~l~v~d~~~g~~~-~l~---------~~~~~~~~~spd  467 (721)
                       +.++++..+...... .......++|+| ||+.|+..+ ++.|.+||+.++... .+.         ...+..++|+||
T Consensus       189 -v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~  267 (393)
T 1erj_A          189 -VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD  267 (393)
T ss_dssp             -EEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred             -EEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC
Confidence             566676554221111 112234568998 899888875 788999999887743 231         245778999999


Q ss_pred             CCeEEEEecCCCCCCCCCcEEEEEEEccCCC-------CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEE
Q 004971          468 REAVVYTSGGPEFASESSEVDIISINVDDVD-------GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM  540 (721)
Q Consensus       468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~  540 (721)
                      |+.|+..+       .++.+.||++......       .......+..+...+..++|+|++++|+..+.   +..|++|
T Consensus       268 g~~l~s~s-------~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~---D~~v~iw  337 (393)
T 1erj_A          268 GQSVVSGS-------LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK---DRGVLFW  337 (393)
T ss_dssp             SSEEEEEE-------TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET---TSEEEEE
T ss_pred             CCEEEEEe-------CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC---CCeEEEE
Confidence            99999886       5789999988643210       00122344455566778999999999998887   7889999


Q ss_pred             ECCCCcccceEECcCCCcCceeeEEcc------CCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971          541 DAEGGEGYGLHRLTEGPWSDTMCNWSP------DGEWIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       541 d~~~g~~~~~~~l~~~~~~~~~~~~Sp------DG~~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      |+.+++.  +..+..+...+..++|+|      +++.|+.++.++       .|.+|++..
T Consensus       338 d~~~~~~--~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg-------~i~iW~~~~  389 (393)
T 1erj_A          338 DKKSGNP--LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC-------KARIWKYKK  389 (393)
T ss_dssp             ETTTCCE--EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS-------EEEEEEEEE
T ss_pred             ECCCCeE--EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCC-------cEEECcccc
Confidence            9998875  556666666677888875      788888888875       899998754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.81  E-value=4.6e-18  Score=176.86  Aligned_cols=287  Identities=15%  Similarity=0.100  Sum_probs=196.4

Q ss_pred             eCCCCCcccCceeecCC-CCEEEEEEecCCCCeeeEEEEECCCCce---EEeecccCCCCcccCcEEcCCCCEEEEEEee
Q 004971          315 VTPPGLHAFTPATSPGN-NKFIAVATRRPTSSYRHIELFDLVKNKF---IELTRFVSPKTHHLNPFISPDSSRVGYHKCR  390 (721)
Q Consensus       315 ~~~~~~~~~~~~~sp~d-G~~la~~~~~~g~~~~~l~l~dl~tg~~---~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~  390 (721)
                      +.+|...+..++|+| + +++|+..+     .+..|.+||+.+++.   ..+.....+...+..+.|+|||+.|+....+
T Consensus        34 L~GH~~~V~~v~~sp-~~~~~l~S~s-----~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d  107 (340)
T 4aow_A           34 LKGHNGWVTQIATTP-QFPDMILSAS-----RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD  107 (340)
T ss_dssp             ECCCSSCEEEEEECT-TCTTEEEEEE-----TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ECCccCCEEEEEEeC-CCCCEEEEEc-----CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence            567777889999999 8 56776643     345699999987542   2333445567778899999999999887655


Q ss_pred             CCCCCCCCcceeEEEeccCCCCccee--cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe----ecCceeeE
Q 004971          391 GGSTREDGNNQLLLENIKSPLPDISL--FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY----FKNAFSTV  463 (721)
Q Consensus       391 ~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~----~~~~~~~~  463 (721)
                      +.         +.+++..........  .........++++++.|+..+ ++.+.+||+.........    ...+..+.
T Consensus       108 ~~---------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~  178 (340)
T 4aow_A          108 GT---------LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR  178 (340)
T ss_dssp             SE---------EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEE
T ss_pred             cc---------ceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceE
Confidence            43         444444333111111  111122357889999888875 788999998776654443    34567788


Q ss_pred             EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC
Q 004971          464 WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE  543 (721)
Q Consensus       464 ~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~  543 (721)
                      |++++...++.+.     ..++.+.+|++....     ....+..+...+..++|+|||++|+..+.   +..|++||+.
T Consensus       179 ~~~~~~~~~~~s~-----~~d~~i~i~d~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---Dg~i~iwd~~  245 (340)
T 4aow_A          179 FSPNSSNPIIVSC-----GWDKLVKVWNLANCK-----LKTNHIGHTGYLNTVTVSPDGSLCASGGK---DGQAMLWDLN  245 (340)
T ss_dssp             ECSCSSSCEEEEE-----ETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEET---TCEEEEEETT
T ss_pred             EccCCCCcEEEEE-----cCCCEEEEEECCCCc-----eeeEecCCCCcEEEEEECCCCCEEEEEeC---CCeEEEEEec
Confidence            9988754333221     246788888765432     45556666677888999999999998887   7899999999


Q ss_pred             CCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee--------cCCCCCcCCeEE
Q 004971          544 GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ--------SGSAGRANHPYF  615 (721)
Q Consensus       544 ~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--------~~~~~~~~~~~~  615 (721)
                      +++.  +..+. ....+..+.|+|++..++.+. +.       .|++||+.++.......        ..+...+..++|
T Consensus       246 ~~~~--~~~~~-~~~~v~~~~~~~~~~~~~~~~-d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  314 (340)
T 4aow_A          246 EGKH--LYTLD-GGDIINALCFSPNRYWLCAAT-GP-------SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW  314 (340)
T ss_dssp             TTEE--EEEEE-CSSCEEEEEECSSSSEEEEEE-TT-------EEEEEETTTTEEEEEECCC-------CCCCCEEEEEE
T ss_pred             cCce--eeeec-CCceEEeeecCCCCceeeccC-CC-------EEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEE
Confidence            8774  44443 334567899999987665554 43       89999998875443221        124556788999


Q ss_pred             CCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971          616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       616 SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  657 (721)
                      +|||++|+..+.++                 .|++||+++|.
T Consensus       315 s~dg~~l~sgs~Dg-----------------~v~iW~~~tGt  339 (340)
T 4aow_A          315 SADGQTLFAGYTDN-----------------LVRVWQVTIGT  339 (340)
T ss_dssp             CTTSSEEEEEETTS-----------------CEEEEEEEC--
T ss_pred             CCCCCEEEEEeCCC-----------------EEEEEeCCCcC
Confidence            99999998877665                 39999988774

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.80  E-value=9.9e-18  Score=175.81  Aligned_cols=269  Identities=12%  Similarity=0.042  Sum_probs=198.1

Q ss_pred             ccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcE
Q 004971          365 FVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGV  441 (721)
Q Consensus       365 ~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l  441 (721)
                      +.+|...+..++|+||+++|+..+.++.         +.+++......  .+.........++|+|+|+.|+..+ ++.+
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~---------v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i  130 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGK---------VIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKC  130 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSE---------EEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCe---------EEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCE
Confidence            3456777889999999999998776554         55555543321  1121222345579999999999885 7889


Q ss_pred             EEEECCCCc-------eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCC
Q 004971          442 YVVNSDGSN-------RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKN  512 (721)
Q Consensus       442 ~v~d~~~g~-------~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~  512 (721)
                      .+|++....       ...+.  ...+..+.|+|+++.|+..+       .++.+.||++....     ....+..+...
T Consensus       131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s-------~D~~v~lwd~~~~~-----~~~~~~~h~~~  198 (354)
T 2pbi_B          131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS-------GDGTCALWDVESGQ-----LLQSFHGHGAD  198 (354)
T ss_dssp             EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEE-------TTSEEEEEETTTCC-----EEEEEECCSSC
T ss_pred             EEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEe-------CCCcEEEEeCCCCe-----EEEEEcCCCCC
Confidence            999886431       22332  45678899999999999886       57899999876532     55666666666


Q ss_pred             CcceEEcc--CCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEE
Q 004971          513 NAFPSVSP--DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL  590 (721)
Q Consensus       513 ~~~~~~Sp--Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~  590 (721)
                      +..+.|+|  +|+.|+..+.   +..|++||+.+++.  +..+..+...+..++|+|+|+.|+.++.+.       .|.+
T Consensus       199 v~~~~~~~~~~g~~l~sgs~---Dg~v~~wd~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~-------~v~l  266 (354)
T 2pbi_B          199 VLCLDLAPSETGNTFVSGGC---DKKAMVWDMRSGQC--VQAFETHESDVNSVRYYPSGDAFASGSDDA-------TCRL  266 (354)
T ss_dssp             EEEEEECCCSSCCEEEEEET---TSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTS-------CEEE
T ss_pred             eEEEEEEeCCCCCEEEEEeC---CCeEEEEECCCCcE--EEEecCCCCCeEEEEEeCCCCEEEEEeCCC-------eEEE
Confidence            77778877  5788988886   78999999998875  556666677788999999999999998875       8999


Q ss_pred             EecCCCceEEeeec-CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC-eEEeccCCCCC
Q 004971          591 IHPNGTGLRKLIQS-GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD-LKRLTQNSFED  668 (721)
Q Consensus       591 ~d~~~~~~~~l~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~lt~~~~~~  668 (721)
                      ||+..++...+... .....+..+.|+|||++|+..+.+.                 .|++||+..++ ...+..|...+
T Consensus       267 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~-----------------~i~vwd~~~~~~~~~l~~h~~~v  329 (354)
T 2pbi_B          267 YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDY-----------------TINVWDVLKGSRVSILFGHENRV  329 (354)
T ss_dssp             EETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS-----------------CEEEEETTTCSEEEEECCCSSCE
T ss_pred             EECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCC-----------------cEEEEECCCCceEEEEECCCCcE
Confidence            99988765544432 1122456789999999998877655                 39999987665 56777788888


Q ss_pred             CCceecCC--cCCcccc
Q 004971          669 GTPAWGPR--FIRPVDV  683 (721)
Q Consensus       669 ~~~~~sp~--~l~~~~~  683 (721)
                      ...+|+|+  +|+..+.
T Consensus       330 ~~l~~spdg~~l~sgs~  346 (354)
T 2pbi_B          330 STLRVSPDGTAFCSGSW  346 (354)
T ss_dssp             EEEEECTTSSCEEEEET
T ss_pred             EEEEECCCCCEEEEEcC
Confidence            89999997  4555543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.80  E-value=2.1e-17  Score=177.72  Aligned_cols=287  Identities=10%  Similarity=0.048  Sum_probs=205.5

Q ss_pred             CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCC
Q 004971          319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDG  398 (721)
Q Consensus       319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~  398 (721)
                      .++..-++||+ ++ .|+...      +..|++||..+|+...+.....+...+..++|+|||++|+..+.++.      
T Consensus       105 d~y~~~l~wS~-~n-~lAvgl------d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~------  170 (420)
T 4gga_A          105 DYYLNLVDWSS-GN-VLAVAL------DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE------  170 (420)
T ss_dssp             CTTCBCEEECT-TS-EEEEEE------TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSC------
T ss_pred             cccceeEEECC-CC-EEEEEe------CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCe------
Confidence            34556789998 75 666643      23599999999987776665666777889999999999998776555      


Q ss_pred             cceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceE--EEe--ecCceeeEEcCCCCeEEE
Q 004971          399 NNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRR--QVY--FKNAFSTVWDPVREAVVY  473 (721)
Q Consensus       399 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~--~l~--~~~~~~~~~spdg~~la~  473 (721)
                         +.++++..+..............+++.+++.|+..+ +..+++|+.......  .+.  ...+....|+|+|+.++.
T Consensus       171 ---v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s  247 (420)
T 4gga_A          171 ---VQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLAS  247 (420)
T ss_dssp             ---EEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ---EEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeee
Confidence               556666554221111122233346677888888774 788999998765532  232  456778999999999998


Q ss_pred             EecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC
Q 004971          474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL  553 (721)
Q Consensus       474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l  553 (721)
                      ..       .++.+.||....... ..........+...+...+|+|++..+++......+..|.+||+.+++.  ...+
T Consensus       248 ~~-------~D~~v~i~~~~~~~~-~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~--~~~~  317 (420)
T 4gga_A          248 GG-------NDNLVNVWPSAPGEG-GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAV  317 (420)
T ss_dssp             EE-------TTSCEEEEESSCCSS-CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE--EEEE
T ss_pred             ee-------ccccceEEeeccccc-cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc--ceee
Confidence            86       578899998765432 0112344445556778899999988777665544577899999999884  3334


Q ss_pred             cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcC
Q 004971          554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA  633 (721)
Q Consensus       554 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~  633 (721)
                      .. ...+..+.|+|+++.|+.+....     ...|++||+.+++...... +|...+..++|||||++|+..+.++    
T Consensus       318 ~~-~~~v~~~~~~~~~~~lv~~sg~~-----d~~I~iwd~~~~~~v~~l~-gH~~~V~~l~~spdg~~l~S~s~D~----  386 (420)
T 4gga_A          318 DA-HSQVCSILWSPHYKELISGHGFA-----QNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADE----  386 (420)
T ss_dssp             EC-SSCEEEEEEETTTTEEEEEECTT-----TCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTT----
T ss_pred             cc-ccceeeeeecCCCCeEEEEEecC-----CCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCC----
Confidence            33 34567899999999999887431     2379999999987765544 4788899999999999999887765    


Q ss_pred             CCCCCCCCCCCCccEEEEEcCCC
Q 004971          634 EPISTPHQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       634 ~~~~~~~~~~~~~~l~~~d~~~~  656 (721)
                                   .|.+||+...
T Consensus       387 -------------tvriWdv~~~  396 (420)
T 4gga_A          387 -------------TLRLWRCFEL  396 (420)
T ss_dssp             -------------EEEEECCSCS
T ss_pred             -------------eEEEEECCCC
Confidence                         3889998654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.80  E-value=1.7e-17  Score=172.25  Aligned_cols=288  Identities=12%  Similarity=0.056  Sum_probs=190.3

Q ss_pred             EEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc-cC-CCCcccCcEEcCCCCEEEEEEee
Q 004971          313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF-VS-PKTHHLNPFISPDSSRVGYHKCR  390 (721)
Q Consensus       313 ~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~-~~-~~~~~~~~~~Spdg~~l~~~~~~  390 (721)
                      ..+..+...+..++|+| +  .|+...     .+..|++||+.++....+... .. |...+..++|+|+++.|+..+.+
T Consensus         8 ~~~~~h~~~v~~~~~s~-~--~las~~-----~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D   79 (330)
T 2hes_X            8 KSLKLYKEKIWSFDFSQ-G--ILATGS-----TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD   79 (330)
T ss_dssp             EEEECCSSCEEEEEEET-T--EEEEEE-----SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred             eeeccCCCceeeeccCC-C--EEEEEc-----CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence            34455666677888988 6  666543     445699999987643333222 22 66778889999999999987766


Q ss_pred             CCCCCCCCcceeEEEeccCCC------Ccc---eecccCCCCceeCcCCCEEEEEe-CCcEEEEECC-CCc-eE---EEe
Q 004971          391 GGSTREDGNNQLLLENIKSPL------PDI---SLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSD-GSN-RR---QVY  455 (721)
Q Consensus       391 ~~~~~~~~~~~l~~~~~~~~~------~~~---~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~-~g~-~~---~l~  455 (721)
                      +.         +.++++....      ..+   .........++|+|||++|+..+ ++.|.+||+. .+. .+   .+.
T Consensus        80 ~~---------v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~  150 (330)
T 2hes_X           80 ST---------VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ  150 (330)
T ss_dssp             SC---------EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred             Cc---------EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence            65         3444442210      011   11122344579999999999885 7899999994 332 12   222


Q ss_pred             --ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC--CCEEEEEEee
Q 004971          456 --FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD--GKWIVFRSTR  531 (721)
Q Consensus       456 --~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD--g~~l~~~s~~  531 (721)
                        ...+..+.|+|+++.|+..+       .++.++||+......   .....+..+...+..++|+|+  +..|+..+. 
T Consensus       151 ~h~~~v~~v~~~p~~~~l~s~s-------~D~~i~iW~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-  219 (330)
T 2hes_X          151 EHSQDVKHVIWHPSEALLASSS-------YDDTVRIWKDYDDDW---ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD-  219 (330)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEE-------TTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECCSSSSCEEEEEET-
T ss_pred             cCCCceEEEEECCCCCEEEEEc-------CCCeEEEEECCCCCe---eEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-
Confidence              45678999999999999887       578999998865321   144566667778888999999  678887776 


Q ss_pred             CCceeEEEEECCCCcc------cceEECcC-CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee--
Q 004971          532 TGYKNLYIMDAEGGEG------YGLHRLTE-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI--  602 (721)
Q Consensus       532 ~g~~~l~~~d~~~g~~------~~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~--  602 (721)
                        +..|.+||+.++..      .....+.. +...+..++|++++ .|+.++.++       .|++|+..+++.+.+.  
T Consensus       220 --D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg-------~v~iw~~~~~~~~~~~~~  289 (330)
T 2hes_X          220 --DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG-------VLAVYEEVDGEWKVFAKR  289 (330)
T ss_dssp             --TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS-------CEEEEEEETTEEEEEEEE
T ss_pred             --CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC-------EEEEEEcCCCceEEEecc
Confidence              67899998865421      11233333 55667889999776 677777664       7999998877533222  


Q ss_pred             ecCCCC-CcCCeEECC--CCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971          603 QSGSAG-RANHPYFSP--DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       603 ~~~~~~-~~~~~~~Sp--DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                      ...+.. .+..++|+|  ||++|+..+.++                 .|.+|+++.
T Consensus       290 ~~~h~~~~v~~v~~~~~~~~~~las~s~Dg-----------------~v~~W~~~~  328 (330)
T 2hes_X          290 ALCHGVYEINVVKWLELNGKTILATGGDDG-----------------IVNFWSLEK  328 (330)
T ss_dssp             SCTTTTSCEEEEEEC-----CCEEEEETTS-----------------EEEEEEC--
T ss_pred             ccccccceEEEEEEecCCCceEEEEecCCC-----------------cEEEEEecc
Confidence            122444 677899999  788888777665                 388898754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.80  E-value=1.5e-17  Score=173.65  Aligned_cols=277  Identities=14%  Similarity=0.078  Sum_probs=185.5

Q ss_pred             cc-CCeEEEEeccCCCCcEEEEEEecCCCcceecccc-ceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEE
Q 004971          275 VD-ESTLFFHRKSEEDDWISVYKVILPQTGLVSTESV-SIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELF  352 (721)
Q Consensus       275 s~-dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~  352 (721)
                      ++ |++++++  ...++.+.+|++......   ...+ ....+..+...+..++|+| ++.+++..+     .+..|++|
T Consensus        35 ~~~d~~~l~s--gs~D~~v~iWd~~~~~~~---~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~s-----~D~~v~lw  103 (343)
T 2xzm_R           35 ENEDSPVLIS--GSRDKTVMIWKLYEEEQN---GYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSS-----WDKTLRLW  103 (343)
T ss_dssp             TTCCCCEEEE--EETTSCEEEEEECSSCCS---SBSEEEEEEECCCSSCEEEEEECS-STTEEEEEE-----TTSEEEEE
T ss_pred             cCCCCCEEEE--EcCCCEEEEEECCcCCcc---cccccccchhccCCCceEEEEECC-CCCEEEEEc-----CCCcEEEE
Confidence            55 7887774  334799999976543210   0000 2334566666788899999 999888754     45569999


Q ss_pred             ECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcc-e---ecccCCCCceeCc
Q 004971          353 DLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI-S---LFRFDGSFPSFSP  428 (721)
Q Consensus       353 dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~---~~~~~~~~~~~Sp  428 (721)
                      |+.+++.  +..+..+...+..++|+|||+.|+....++.         +.++++....... .   ........++|+|
T Consensus       104 d~~~~~~--~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~---------i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~  172 (343)
T 2xzm_R          104 DLRTGTT--YKRFVGHQSEVYSVAFSPDNRQILSAGAERE---------IKLWNILGECKFSSAEKENHSDWVSCVRYSP  172 (343)
T ss_dssp             ETTSSCE--EEEEECCCSCEEEEEECSSTTEEEEEETTSC---------EEEEESSSCEEEECCTTTSCSSCEEEEEECC
T ss_pred             ECCCCcE--EEEEcCCCCcEEEEEECCCCCEEEEEcCCCE---------EEEEeccCCceeeeecccCCCceeeeeeecc
Confidence            9999874  3334556778889999999999988766554         4555554221000 0   0111123457787


Q ss_pred             CC----------CEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971          429 KG----------DRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD  495 (721)
Q Consensus       429 DG----------~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~  495 (721)
                      ++          ..++..+ ++.|.+||........+.  ...+..++|+|||++|+..+       .++.+.||++...
T Consensus       173 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs-------~dg~v~iwd~~~~  245 (343)
T 2xzm_R          173 IMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGG-------KDKKLLIWDILNL  245 (343)
T ss_dssp             CCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEE-------TTCEEEEEESSCC
T ss_pred             ccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEc-------CCCeEEEEECCCC
Confidence            76          6777764 789999996543333333  45688999999999999887       5789999987432


Q ss_pred             CCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-----------CCCcCceeeE
Q 004971          496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-----------EGPWSDTMCN  564 (721)
Q Consensus       496 ~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-----------~~~~~~~~~~  564 (721)
                      ..    ....+. ....+..++|+|++++|+...    +..|++|++.+++...+..+.           .+...+..++
T Consensus       246 ~~----~~~~~~-~~~~v~~v~~sp~~~~la~~~----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  316 (343)
T 2xzm_R          246 TY----PQREFD-AGSTINQIAFNPKLQWVAVGT----DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLA  316 (343)
T ss_dssp             SS----CSEEEE-CSSCEEEEEECSSSCEEEEEE----SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEE
T ss_pred             cc----cceeec-CCCcEEEEEECCCCCEEEEEC----CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEE
Confidence            21    223332 234577899999999887554    457999999877642222332           2334467899


Q ss_pred             EccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971          565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       565 ~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                      |+|||++|+.++.++       .|++|++.++
T Consensus       317 ~sp~g~~l~sg~~Dg-------~v~~w~~~~g  341 (343)
T 2xzm_R          317 WNALGKKLFAGFTDG-------VIRTFSFETS  341 (343)
T ss_dssp             ECSSSCCEEEEETTS-------EEEEEEEEEE
T ss_pred             ECCCCCeEEEecCCc-------eEEEEEEEcc
Confidence            999999999998875       8999997654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.79  E-value=3.5e-17  Score=170.32  Aligned_cols=295  Identities=11%  Similarity=0.060  Sum_probs=179.4

Q ss_pred             CCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECC--CCceEEeeccc
Q 004971          289 DDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLV--KNKFIELTRFV  366 (721)
Q Consensus       289 ~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~--tg~~~~l~~~~  366 (721)
                      ++.+.+|.+...+..       ...........+..++|+| ||++|++.....    ..|.+|++.  +++...+....
T Consensus        14 ~~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~   81 (343)
T 1ri6_A           14 SQQIHVWNLNHEGAL-------TLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPE----FRVLAYRIAPDDGALTFAAESA   81 (343)
T ss_dssp             GTEEEEEEECTTSCE-------EEEEEEECSSCCCCEEECT-TSSEEEEEETTT----TEEEEEEECTTTCCEEEEEEEE
T ss_pred             CCeEEEEEECCCCcE-------EEeeeEecCCCCceEEECC-CCCEEEEeecCC----CeEEEEEecCCCCceeeccccc
Confidence            677888866432211       1222223344567899999 999988865431    458888887  66655554433


Q ss_pred             CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC--Ccce--ecccCCCCceeCcCCCEEEEEe--CCc
Q 004971          367 SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL--PDIS--LFRFDGSFPSFSPKGDRIAFVE--FPG  440 (721)
Q Consensus       367 ~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~--~~~~~~~~~~~SpDG~~la~~~--~~~  440 (721)
                      ... ....++|+|||++|++......        .+.++++..+.  ..+.  ........++|+|||++|++..  ++.
T Consensus        82 ~~~-~~~~~~~s~dg~~l~~~~~~~~--------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  152 (343)
T 1ri6_A           82 LPG-SLTHISTDHQGQFVFVGSYNAG--------NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDR  152 (343)
T ss_dssp             CSS-CCSEEEECTTSSEEEEEETTTT--------EEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTE
T ss_pred             cCC-CCcEEEEcCCCCEEEEEecCCC--------eEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCE
Confidence            222 5667899999999888654332        35555552111  0111  1112345679999999988774  688


Q ss_pred             EEEEECCC-CceEE-----Ee---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-
Q 004971          441 VYVVNSDG-SNRRQ-----VY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-  510 (721)
Q Consensus       441 l~v~d~~~-g~~~~-----l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-  510 (721)
                      |++|++.+ ++...     +.   ...+..+.|+|||++|+++..      .++.+.+|+++...+ .......+.... 
T Consensus       153 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~------~~~~i~~~~~~~~~g-~~~~~~~~~~~~~  225 (343)
T 1ri6_A          153 ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE------LNSSVDVWELKDPHG-NIECVQTLDMMPE  225 (343)
T ss_dssp             EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET------TTTEEEEEESSCTTS-CCEEEEEEECSCT
T ss_pred             EEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC------CCCEEEEEEecCCCC-cEEEEeeccccCc
Confidence            99999987 65432     22   224567899999999988762      457788888764332 000112222111 


Q ss_pred             -----CCCcceEEccCCCEEEEEEeeCCceeEEEEECC--CCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCC
Q 004971          511 -----KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE--GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS  583 (721)
Q Consensus       511 -----~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~--~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~  583 (721)
                           .....++|+|||++|++....  +..|++|++.  +++.+.+..+..+.. ...++|+|||++|+++....    
T Consensus       226 ~~~~~~~~~~i~~s~dg~~l~v~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~----  298 (343)
T 1ri6_A          226 NFSDTRWAADIHITPDGRHLYACDRT--ASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKS----  298 (343)
T ss_dssp             TCCSCCCEEEEEECTTSSEEEEEETT--TTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTT----
T ss_pred             cccccCCccceEECCCCCEEEEEecC--CCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCC----
Confidence                 123358999999999876632  5678888887  454333334433333 67899999999998887542    


Q ss_pred             CceeEEEEecCCCceEEeeecCCCCCcCCeEECCC
Q 004971          584 GSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD  618 (721)
Q Consensus       584 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpD  618 (721)
                      +...||.+|..+++.+.+...........++|.|+
T Consensus       299 ~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~  333 (343)
T 1ri6_A          299 HHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH  333 (343)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEE
T ss_pred             CeEEEEEEcCCCceeeEccccccCCCCeeEEEEcc
Confidence            33344444777776665543222233444555544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.79  E-value=9.7e-17  Score=167.70  Aligned_cols=275  Identities=9%  Similarity=0.040  Sum_probs=169.8

Q ss_pred             eeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-ccee---cccCCC
Q 004971          347 RHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISL---FRFDGS  422 (721)
Q Consensus       347 ~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~---~~~~~~  422 (721)
                      ..++.+|.++++...+.... .......++|||||+ |++....+..      ..++++++.++.. .+..   ......
T Consensus        18 i~v~~~d~~tg~~~~~~~~~-~~~~p~~~a~spdg~-l~~~~~~~~~------~~v~~~~~~~g~~~~~~~~~~~~~~p~   89 (347)
T 3hfq_A           18 IYQGTLDTTAKTLTNDGLLA-ATQNPTYLALSAKDC-LYSVDKEDDE------GGIAAWQIDGQTAHKLNTVVAPGTPPA   89 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEEE-ECSCCCCEEECTTCE-EEEEEEETTE------EEEEEEEEETTEEEEEEEEEEESCCCS
T ss_pred             EEEEEEcCCCCeEEEeeeee-ccCCcceEEEccCCe-EEEEEecCCC------ceEEEEEecCCcEEEeeeeecCCCCCE
Confidence            34566677778765543221 234566799999999 7776653211      4577777754421 2221   223345


Q ss_pred             CceeCcCCCEEEEEe--CCcEEEEECC-CCceEEEe----ec----------CceeeEEcCCCCeEEEEecCCCCCCCCC
Q 004971          423 FPSFSPKGDRIAFVE--FPGVYVVNSD-GSNRRQVY----FK----------NAFSTVWDPVREAVVYTSGGPEFASESS  485 (721)
Q Consensus       423 ~~~~SpDG~~la~~~--~~~l~v~d~~-~g~~~~l~----~~----------~~~~~~~spdg~~la~~~~~~~~~~~~~  485 (721)
                      .++|+|||++|++..  .+.+.+|+++ ++....+.    .+          .+..++|+|||+ ++++..      .++
T Consensus        90 ~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~------~~~  162 (347)
T 3hfq_A           90 YVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDL------GSD  162 (347)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEET------TTT
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeC------CCC
Confidence            679999999998885  5679999985 45544443    11          145689999999 666542      456


Q ss_pred             cEEEEEEEccCCCCccceEEc---ccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECC--CCcccceEECcCCC--
Q 004971          486 EVDIISINVDDVDGVSAVRRL---TTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE--GGEGYGLHRLTEGP--  557 (721)
Q Consensus       486 ~~~i~~~~~~~~~~~~~~~~l---~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~--~g~~~~~~~l~~~~--  557 (721)
                      .+.+|+++..+     ....+   .... .....++|+|||++|++.....  ..|++|+++  +++...+..+....  
T Consensus       163 ~v~~~~~~~~g-----~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~--~~v~v~~~~~~~g~~~~~~~~~~~~~~  235 (347)
T 3hfq_A          163 KVYVYNVSDAG-----QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS--SQIASLKYDTQTGAFTQLGIVKTIPAD  235 (347)
T ss_dssp             EEEEEEECTTS-----CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT--TEEEEEEEETTTTEEEEEEEEESSCTT
T ss_pred             EEEEEEECCCC-----cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC--CEEEEEEecCCCCceEEeeeeeecCCC
Confidence            78888887433     22221   2211 2455689999999998877643  345555544  46532222222211  


Q ss_pred             ----cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC-CCceEEeeec-CCCCCcCCeEECCCCCEEEEEEecCCC
Q 004971          558 ----WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN-GTGLRKLIQS-GSAGRANHPYFSPDGKSIVFTSDYGGI  631 (721)
Q Consensus       558 ----~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~-~~~~~~l~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~~  631 (721)
                          .....++|||||++|+++....      ..|.+|+++ +++.+.+... .+......++|||||++|+++....+.
T Consensus       236 ~~~~~~~~~i~~spdG~~l~v~~~~~------~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~  309 (347)
T 3hfq_A          236 YTAHNGAAAIRLSHDGHFLYVSNRGY------NTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDN  309 (347)
T ss_dssp             CCSCCEEEEEEECTTSCEEEEEEETT------TEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTE
T ss_pred             CCCCCcceeEEECCCCCEEEEEeCCC------CEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCc
Confidence                2246799999999998776532      278888886 3333333221 123456789999999999887766442


Q ss_pred             cCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          632 SAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       632 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      -              .+|.+|.++++++++..
T Consensus       310 v--------------~v~~~d~~tg~l~~~~~  327 (347)
T 3hfq_A          310 A--------------TLYARDLTSGKLSLLQK  327 (347)
T ss_dssp             E--------------EEEEECTTTCCEEEEEE
T ss_pred             E--------------EEEEEeCCCCeEEeccc
Confidence            1              24555778888887764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.79  E-value=4.9e-18  Score=180.98  Aligned_cols=288  Identities=11%  Similarity=0.038  Sum_probs=199.8

Q ss_pred             EeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCc----eEEeecccCCCCcccCcEEcCC----C---C
Q 004971          314 RVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNK----FIELTRFVSPKTHHLNPFISPD----S---S  382 (721)
Q Consensus       314 ~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~----~~~l~~~~~~~~~~~~~~~Spd----g---~  382 (721)
                      .+..+...+..++|+|   ++|+...     .+..|++||+.+++    ...+.....+...+..++|+|+    |   +
T Consensus        11 ~~~~h~~~i~~~~~~~---~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~   82 (397)
T 1sq9_A           11 AGKAHDADIFSVSACN---SFTVSCS-----GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC   82 (397)
T ss_dssp             ESSCSSSCEEEEEECS---SEEEEEE-----TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred             hhhhhhcCeEEEEecC---CeEEEEc-----CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc
Confidence            3445666778888976   6777643     34569999999876    1112222345677888999999    8   8


Q ss_pred             EEEEEEeeCCCCCCCCcceeEEEeccCCCC-------cceec-----ccCCCCceeC----cCCCE-EEEEe-CCcEEEE
Q 004971          383 RVGYHKCRGGSTREDGNNQLLLENIKSPLP-------DISLF-----RFDGSFPSFS----PKGDR-IAFVE-FPGVYVV  444 (721)
Q Consensus       383 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~-----~~~~~~~~~S----pDG~~-la~~~-~~~l~v~  444 (721)
                      .|+....++.         +.++++.....       .+...     ......++|+    |+++. |+..+ ++.|++|
T Consensus        83 ~l~s~~~dg~---------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  153 (397)
T 1sq9_A           83 LVATTSFSGD---------LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW  153 (397)
T ss_dssp             EEEEEETTSC---------EEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEE
T ss_pred             EEEEEcCCCC---------EEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEE
Confidence            8888765554         45555543321       11111     1334457999    99999 87774 7889999


Q ss_pred             ECCC------Cc-eE-----EEe---------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccce
Q 004971          445 NSDG------SN-RR-----QVY---------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAV  503 (721)
Q Consensus       445 d~~~------g~-~~-----~l~---------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  503 (721)
                      |+..      ++ ..     .+.         ...+..+.|+|++ .|+..+       .++.+.+|++....     ..
T Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-------~dg~i~i~d~~~~~-----~~  220 (397)
T 1sq9_A          154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF-------NNGTVQISELSTLR-----PL  220 (397)
T ss_dssp             EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC-------TTSEEEEEETTTTE-----EE
T ss_pred             eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe-------CCCcEEEEECCCCc-----ee
Confidence            9987      43 22     331         4567899999999 777664       56788888875422     44


Q ss_pred             EEccc---C---CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-------------CCcCceeeE
Q 004971          504 RRLTT---N---GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-------------GPWSDTMCN  564 (721)
Q Consensus       504 ~~l~~---~---~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-------------~~~~~~~~~  564 (721)
                      ..+..   +   ...+..++|+||+++|++.+...+...|++||+.+++.  +..+..             +...+..++
T Consensus       221 ~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~  298 (397)
T 1sq9_A          221 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER--IGSLSVPTHSSQASLGEFAHSSWVMSLS  298 (397)
T ss_dssp             EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE--EEEECBC--------CCBSBSSCEEEEE
T ss_pred             EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc--cceeccCcccccccccccccCCcEEEEE
Confidence            55555   5   66788899999999999988722228999999998875  555554             566678999


Q ss_pred             EccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec-----CC---------------CCCcCCeEECCCC-----
Q 004971          565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS-----GS---------------AGRANHPYFSPDG-----  619 (721)
Q Consensus       565 ~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-----~~---------------~~~~~~~~~SpDG-----  619 (721)
                      |+|||++|+.++.++       .|++||+.+++.......     .+               ...+..++|+|||     
T Consensus       299 ~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~  371 (397)
T 1sq9_A          299 FNDSGETLCSAGWDG-------KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM  371 (397)
T ss_dssp             ECSSSSEEEEEETTS-------EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBST
T ss_pred             ECCCCCEEEEEeCCC-------eEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccc
Confidence            999999999988775       899999998876655541     24               6678899999999     


Q ss_pred             -----CEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971          620 -----KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       620 -----~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  657 (721)
                           ++|+..+.++                 .|.+|++++|+
T Consensus       372 ~~~~~~~l~s~~~dg-----------------~i~iw~~~~g~  397 (397)
T 1sq9_A          372 GADLNESLCCVCLDR-----------------SIRWFREAGGK  397 (397)
T ss_dssp             TCTTSCEEEEEETTT-----------------EEEEEEEEC--
T ss_pred             cccccceEEEecCCC-----------------cEEEEEcCCCC
Confidence                 6777666554                 49999987763

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.79  E-value=3.5e-17  Score=171.10  Aligned_cols=254  Identities=13%  Similarity=0.132  Sum_probs=163.2

Q ss_pred             CcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971          320 LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN  399 (721)
Q Consensus       320 ~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~  399 (721)
                      .....++||| ||+ |++....  ..+..|++||+.+++.+.+.....+......++|+|||++|++.....+       
T Consensus        40 ~~p~~~a~sp-dg~-l~~~~~~--~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~-------  108 (347)
T 3hfq_A           40 QNPTYLALSA-KDC-LYSVDKE--DDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKG-------  108 (347)
T ss_dssp             SCCCCEEECT-TCE-EEEEEEE--TTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTT-------
T ss_pred             CCcceEEEcc-CCe-EEEEEec--CCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCC-------
Confidence            3456789999 998 6665432  2356799999988876665543333455667899999999988764332       


Q ss_pred             ceeEEEeccC-C-CCcceecccC------------CCCceeCcCCCEEEEEe--CCcEEEEECC-CCceEEEe------e
Q 004971          400 NQLLLENIKS-P-LPDISLFRFD------------GSFPSFSPKGDRIAFVE--FPGVYVVNSD-GSNRRQVY------F  456 (721)
Q Consensus       400 ~~l~~~~~~~-~-~~~~~~~~~~------------~~~~~~SpDG~~la~~~--~~~l~v~d~~-~g~~~~l~------~  456 (721)
                       .+.++++.. + ...+......            ...++|+|||+ +++..  .+.|++|+++ +++...+.      .
T Consensus       109 -~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g  186 (347)
T 3hfq_A          109 -TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG  186 (347)
T ss_dssp             -EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTT
T ss_pred             -EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC
Confidence             344444431 1 1111111111            22379999999 65553  5679999998 56554332      1


Q ss_pred             cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceE---EcccCC------CCCcceEEccCCCEEEE
Q 004971          457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVR---RLTTNG------KNNAFPSVSPDGKWIVF  527 (721)
Q Consensus       457 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~l~~~~------~~~~~~~~SpDg~~l~~  527 (721)
                      ..+..++|+|||++|+++..      .++.+.+|+++...+    ...   .+....      .....++|+|||++|++
T Consensus       187 ~~p~~~~~spdg~~l~v~~~------~~~~v~v~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v  256 (347)
T 3hfq_A          187 FGPRHLVFSPDGQYAFLAGE------LSSQIASLKYDTQTG----AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYV  256 (347)
T ss_dssp             CCEEEEEECTTSSEEEEEET------TTTEEEEEEEETTTT----EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEE
T ss_pred             CCCceEEECCCCCEEEEEeC------CCCEEEEEEecCCCC----ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEE
Confidence            24567899999999998763      467889999886432    322   222211      12455899999999987


Q ss_pred             EEeeCCceeEEEEECC-CCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971          528 RSTRTGYKNLYIMDAE-GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI  602 (721)
Q Consensus       528 ~s~~~g~~~l~~~d~~-~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  602 (721)
                      ....  ...|.+|+++ +++...+..+..+......++|||||++|+++....    +...||.+|..+|+.+.+.
T Consensus       257 ~~~~--~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~----~~v~v~~~d~~tg~l~~~~  326 (347)
T 3hfq_A          257 SNRG--YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT----DNATLYARDLTSGKLSLLQ  326 (347)
T ss_dssp             EEET--TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT----TEEEEEEECTTTCCEEEEE
T ss_pred             EeCC--CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC----CcEEEEEEeCCCCeEEecc
Confidence            7653  4578888876 333222444444333457899999999999888653    3344555577788877654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.79  E-value=4.3e-17  Score=172.76  Aligned_cols=301  Identities=13%  Similarity=0.060  Sum_probs=194.8

Q ss_pred             eecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCC---cceeccCCeEEEEecc
Q 004971          210 RLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGG---WPCWVDESTLFFHRKS  286 (721)
Q Consensus       210 ~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~---~~~ws~dg~l~~~~~~  286 (721)
                      .|..|.......+|||||++|+.++.+            ..|.+|+..+++..........   ..+|+|||+.+++  .
T Consensus        61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D------------~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las--~  126 (380)
T 3iz6_a           61 TLQGHSGKVYSLDWTPEKNWIVSASQD------------GRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC--G  126 (380)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETT------------SEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEE--C
T ss_pred             cccccccEEEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEE--e
Confidence            355566666666999999999997754            4689999988876554432222   4589999987773  4


Q ss_pred             CCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCC-EEEEEEecCCCCeeeEEEEECCCCceEEeecc
Q 004971          287 EEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNK-FIAVATRRPTSSYRHIELFDLVKNKFIELTRF  365 (721)
Q Consensus       287 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~-~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~  365 (721)
                      ..++.+.+|.+......  .........+..+...+..+.|+| ++. .|+..     +.+..|.+||+.+++.......
T Consensus       127 ~~d~~v~iw~~~~~~~~--~~~~~~~~~~~gh~~~v~~~~~~~-~~~~~l~s~-----s~D~~i~~wd~~~~~~~~~~~~  198 (380)
T 3iz6_a          127 GLDSACSIFNLSSQADR--DGNMPVSRVLTGHKGYASSCQYVP-DQETRLITG-----SGDQTCVLWDVTTGQRISIFGS  198 (380)
T ss_dssp             CSSSCCEEEECCCCSSC--CCSSTTCCBCCCCSSCCCCCBCCS-SSSSCEEEE-----CTTSCEEEECTTTCCEEEEECC
T ss_pred             eCCCcEEEEECCCCccc--cCCccceeeccCCCcceEEEEEec-CCCCEEEEE-----CCCCcEEEEEcCCCcEEEEeec
Confidence            44788999966432110  000012233455665677888999 754 45542     3456699999999875433211


Q ss_pred             ---cCCCCcccCcEEcC-CCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee---cccCCCCceeCcCCCEEEEEe-
Q 004971          366 ---VSPKTHHLNPFISP-DSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL---FRFDGSFPSFSPKGDRIAFVE-  437 (721)
Q Consensus       366 ---~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~SpDG~~la~~~-  437 (721)
                         ..+...+..+.|++ ++..|+..+.++.         +.++++......+..   .......++|+|||++|+..+ 
T Consensus       199 ~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~---------v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~  269 (380)
T 3iz6_a          199 EFPSGHTADVLSLSINSLNANMFISGSCDTT---------VRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD  269 (380)
T ss_dssp             CSSSSCCSCEEEEEECSSSCCEEEEEETTSC---------EEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS
T ss_pred             ccCCCCccCeEEEEeecCCCCEEEEEECCCe---------EEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC
Confidence               23455566778876 7777777665554         566666532222211   223345578888888877774 


Q ss_pred             CCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceE
Q 004971          438 FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPS  517 (721)
Q Consensus       438 ~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~  517 (721)
                      ++.|.+||+.+++........                                            ..........+..++
T Consensus       270 D~~i~lwd~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~v~~~~  305 (380)
T 3iz6_a          270 DGTCRLFDMRTGHQLQVYNRE--------------------------------------------PDRNDNELPIVTSVA  305 (380)
T ss_dssp             SSCEEEEETTTTEEEEEECCC--------------------------------------------CSSSCCSSCSCSEEE
T ss_pred             CCeEEEEECCCCcEEEEeccc--------------------------------------------ccccccccCceEEEE
Confidence            677888888766543322000                                            000000112356789


Q ss_pred             EccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC----cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971          518 VSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL----TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       518 ~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                      |+|+|++|+..+.   +..|++||..+++.  +..+    ..+...+..++|||||+.|+.++.++       .|.+|++
T Consensus       306 ~s~~g~~l~~g~~---dg~i~vwd~~~~~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~-------~i~iW~~  373 (380)
T 3iz6_a          306 FSISGRLLFAGYS---NGDCYVWDTLLAEM--VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK-------NLKIWAF  373 (380)
T ss_dssp             ECSSSSEEEEECT---TSCEEEEETTTCCE--EEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS-------CEEEEEC
T ss_pred             ECCCCCEEEEEEC---CCCEEEEECCCCce--EEEEecccCCCCCceEEEEECCCCCEEEEeeCCC-------CEEEEec
Confidence            9999999998776   77899999988774  3333    34556678999999999999988875       8999998


Q ss_pred             CCCc
Q 004971          594 NGTG  597 (721)
Q Consensus       594 ~~~~  597 (721)
                      .+.+
T Consensus       374 ~~~~  377 (380)
T 3iz6_a          374 SGHR  377 (380)
T ss_dssp             CSSS
T ss_pred             CCCc
Confidence            7653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.79  E-value=1.1e-17  Score=181.28  Aligned_cols=274  Identities=9%  Similarity=0.063  Sum_probs=183.2

Q ss_pred             CcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce---------EEeecccCCC------------CcccCcEEc
Q 004971          320 LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF---------IELTRFVSPK------------THHLNPFIS  378 (721)
Q Consensus       320 ~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~---------~~l~~~~~~~------------~~~~~~~~S  378 (721)
                      ..+..++|+| +|++|+...     .++.|.+||+.+++.         ..+.....+.            ..+..++|+
T Consensus        29 ~~V~~v~~s~-~g~~la~g~-----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~  102 (447)
T 3dw8_B           29 DIISTVEFNH-SGELLATGD-----KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL  102 (447)
T ss_dssp             GSEEEEEECS-SSSEEEEEE-----TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred             CcEEEEEECC-CCCEEEEEc-----CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence            3567889999 999998854     345699999987651         1233334455            567889999


Q ss_pred             CCC--CEEEEEEeeCCCCCCCCcceeEEEeccCCCC-----------------------------------------c-c
Q 004971          379 PDS--SRVGYHKCRGGSTREDGNNQLLLENIKSPLP-----------------------------------------D-I  414 (721)
Q Consensus       379 pdg--~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------------------------~-~  414 (721)
                      |++  ..|+....++.       ..+|  ++.....                                         . .
T Consensus       103 ~~~~~~~l~s~s~d~~-------i~iw--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B          103 PQKNAAQFLLSTNDKT-------IKLW--KISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCSSSEEEEEECSSC-------EEEE--EEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CCCCcceEEEeCCCCe-------EEEE--ecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            998  78887766555       3333  3321100                                         0 0


Q ss_pred             eecccCCCCceeCcCCCEEEEEeCCcEEEEECCC-CceEEE--------e--ecCceeeEEcCCC-CeEEEEecCCCCCC
Q 004971          415 SLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDG-SNRRQV--------Y--FKNAFSTVWDPVR-EAVVYTSGGPEFAS  482 (721)
Q Consensus       415 ~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~-g~~~~l--------~--~~~~~~~~~spdg-~~la~~~~~~~~~~  482 (721)
                      .........++|+|||+.|+...++.|.+||+.. +....+        .  ...+..++|+|++ +.|+..+       
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-------  246 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS-------  246 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE-------
T ss_pred             cCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe-------
Confidence            1122234557999999999988888999999983 333321        1  3457899999999 8888776       


Q ss_pred             CCCcEEEEEEEccCCCCccceEEcccCCC------------CCcceEEccCCCEEEEEEeeCCceeEEEEECCC-Ccccc
Q 004971          483 ESSEVDIISINVDDVDGVSAVRRLTTNGK------------NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG-GEGYG  549 (721)
Q Consensus       483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~-g~~~~  549 (721)
                      .++.+.||++..... .......+..+..            .+..++|+|||++|+..+.    ..|++||+.+ ++.  
T Consensus       247 ~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~v~iwd~~~~~~~--  319 (447)
T 3dw8_B          247 SKGTIRLCDMRASAL-CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY----LSVKVWDLNMENRP--  319 (447)
T ss_dssp             TTSCEEEEETTTCSS-SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES----SEEEEEETTCCSSC--
T ss_pred             CCCeEEEEECcCCcc-ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC----CeEEEEeCCCCccc--
Confidence            578899998765331 0001355555443            6778999999999997763    6899999986 553  


Q ss_pred             eEECcCCCcC---------------ceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec----------
Q 004971          550 LHRLTEGPWS---------------DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS----------  604 (721)
Q Consensus       550 ~~~l~~~~~~---------------~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~----------  604 (721)
                      +..+..+...               ...++|+|||++|+.++.++       .|++||+.+++...+...          
T Consensus       320 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg-------~v~iwd~~~~~~~~~~~~~~~~~~~~~~  392 (447)
T 3dw8_B          320 VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNN-------FFRMFDRNTKRDITLEASRENNKPRTVL  392 (447)
T ss_dssp             SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTT-------EEEEEETTTCCEEEEECCSTTCCTTCBC
T ss_pred             cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCC-------EEEEEEcCCCcceeeeeccccccccccc
Confidence            3333333211               12389999999998888775       899999999876654321          


Q ss_pred             ---------------------CCCCCcCCeEECCCCCEEEEEEecC
Q 004971          605 ---------------------GSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       605 ---------------------~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                                           .....+..++|+|+|..|++.+.+.
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~  438 (447)
T 3dw8_B          393 KPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN  438 (447)
T ss_dssp             CCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred             CCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce
Confidence                                 0123456699999999998876543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.79  E-value=2.8e-17  Score=168.99  Aligned_cols=274  Identities=13%  Similarity=0.109  Sum_probs=191.7

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      ..+|+|||+++++  ...++.+.+|......         ....+..+...+..++|+| +|++|+...     .+..|.
T Consensus        28 ~~~~s~~~~~l~s--~~~dg~i~iw~~~~~~---------~~~~~~~h~~~v~~~~~~~-~~~~l~s~~-----~d~~i~   90 (312)
T 4ery_A           28 SVKFSPNGEWLAS--SSADKLIKIWGAYDGK---------FEKTISGHKLGISDVAWSS-DSNLLVSAS-----DDKTLK   90 (312)
T ss_dssp             EEEECTTSSEEEE--EETTSCEEEEETTTCC---------EEEEECCCSSCEEEEEECT-TSSEEEEEE-----TTSEEE
T ss_pred             EEEECCCCCEEEE--eeCCCeEEEEeCCCcc---------cchhhccCCCceEEEEEcC-CCCEEEEEC-----CCCEEE
Confidence            3479999987664  3347889999543221         3445566666788899999 999988754     345699


Q ss_pred             EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--ceecccCCCCceeCc
Q 004971          351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSP  428 (721)
Q Consensus       351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~Sp  428 (721)
                      +||+.+++..  .....+...+..+.|+|+++.|+....++.         +.++++..+...  +.........+.|+|
T Consensus        91 vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~---------i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  159 (312)
T 4ery_A           91 IWDVSSGKCL--KTLKGHSNYVFCCNFNPQSNLIVSGSFDES---------VRIWDVKTGKCLKTLPAHSDPVSAVHFNR  159 (312)
T ss_dssp             EEETTTCCEE--EEEECCSSCEEEEEECSSSSEEEEEETTSC---------EEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred             EEECCCCcEE--EEEcCCCCCEEEEEEcCCCCEEEEEeCCCc---------EEEEECCCCEEEEEecCCCCcEEEEEEcC
Confidence            9999988743  333455677888999999999988765554         566666554211  111122234578999


Q ss_pred             CCCEEEEEe-CCcEEEEECCCCceEE-Ee---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccce
Q 004971          429 KGDRIAFVE-FPGVYVVNSDGSNRRQ-VY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAV  503 (721)
Q Consensus       429 DG~~la~~~-~~~l~v~d~~~g~~~~-l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  503 (721)
                      +|+.|+..+ ++.|.+||+.+++... +.   ...+..+.|+|++++|+..+       .++.+.+|++....     ..
T Consensus       160 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~-----~~  227 (312)
T 4ery_A          160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-------LDNTLKLWDYSKGK-----CL  227 (312)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-------TTTEEEEEETTTTE-----EE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-------CCCeEEEEECCCCc-----EE
Confidence            999988875 7889999998877533 32   33567799999999999886       56888898875422     34


Q ss_pred             EEcccCCCC--CcceEEc-cCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCC
Q 004971          504 RRLTTNGKN--NAFPSVS-PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN  580 (721)
Q Consensus       504 ~~l~~~~~~--~~~~~~S-pDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~  580 (721)
                      ..+..+...  .....++ +++++|+..+.   +..|++||+.+++.  +..+..+...+..++|+|+++.|+.++... 
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~-  301 (312)
T 4ery_A          228 KTYTGHKNEKYCIFANFSVTGGKWIVSGSE---DNLVYIWNLQTKEI--VQKLQGHTDVVISTACHPTENIIASAALEN-  301 (312)
T ss_dssp             EEECSSCCSSSCCCEEEECSSSCEEEECCT---TSCEEEEETTTCCE--EEEECCCSSCEEEEEECSSSSEEEEEECTT-
T ss_pred             EEEEecCCceEEEEEEEEeCCCcEEEEECC---CCEEEEEECCCchh--hhhhhccCCcEEEEeecCcCCceEEEEccC-
Confidence            445444322  2223444 67888877765   77899999998875  666766777788999999999999887421 


Q ss_pred             CCCCceeEEEEecC
Q 004971          581 PGSGSFEMYLIHPN  594 (721)
Q Consensus       581 ~~~~~~~i~~~d~~  594 (721)
                          ...|.+|+.+
T Consensus       302 ----d~~i~~W~~d  311 (312)
T 4ery_A          302 ----DKTIKLWKSD  311 (312)
T ss_dssp             ----TCCEEEEECC
T ss_pred             ----CccEEEecCC
Confidence                1268888754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.79  E-value=2e-17  Score=170.76  Aligned_cols=276  Identities=12%  Similarity=0.089  Sum_probs=188.1

Q ss_pred             ceeccCC-eEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          272 PCWVDES-TLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       272 ~~ws~dg-~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      .+|++++ +++++  ...++.+.+|.+.......    -.....+..+...+..++|+| ||++|+...     .+..|+
T Consensus        23 l~~~~~~~~~l~s--~s~D~~v~~W~~~~~~~~~----~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s-----~D~~v~   90 (319)
T 3frx_A           23 LATSAGQPNLLLS--ASRDKTLISWKLTGDDQKF----GVPVRSFKGHSHIVQDCTLTA-DGAYALSAS-----WDKTLR   90 (319)
T ss_dssp             EEECSSCTTEEEE--EETTSEEEEEEEEEETTEE----EEEEEEEECCSSCEEEEEECT-TSSEEEEEE-----TTSEEE
T ss_pred             EEccCCCccEEEE--ecCCccEEEecCCCCCccc----cccceEEeCCcccEEEEEECC-CCCEEEEEe-----CCCEEE
Confidence            4788864 56664  3347999999765432110    002334556666778899999 999988754     456699


Q ss_pred             EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceecccCCCCceeCcC
Q 004971          351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRFDGSFPSFSPK  429 (721)
Q Consensus       351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpD  429 (721)
                      +||+.+++.  +..+..+...+..++|+|+++.|+..+.++.         +.++++.+... .+.........+.|+|+
T Consensus        91 ~wd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~---------i~vwd~~~~~~~~~~~h~~~v~~~~~~~~  159 (319)
T 3frx_A           91 LWDVATGET--YQRFVGHKSDVMSVDIDKKASMIISGSRDKT---------IKVWTIKGQCLATLLGHNDWVSQVRVVPN  159 (319)
T ss_dssp             EEETTTTEE--EEEEECCSSCEEEEEECTTSCEEEEEETTSC---------EEEEETTSCEEEEECCCSSCEEEEEECCC
T ss_pred             EEECCCCCe--eEEEccCCCcEEEEEEcCCCCEEEEEeCCCe---------EEEEECCCCeEEEEeccCCcEEEEEEccC
Confidence            999999874  3344566778889999999999988776665         44555543210 01111111233567764


Q ss_pred             ------CCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971          430 ------GDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG  499 (721)
Q Consensus       430 ------G~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~  499 (721)
                            +..|+..+ ++.|.+||+..++.....   ...+..++|+|||+.|+..+       .++.++||++....   
T Consensus       160 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-------~dg~i~iwd~~~~~---  229 (319)
T 3frx_A          160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG-------KDGEIMLWNLAAKK---  229 (319)
T ss_dssp             ------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE-------TTCEEEEEETTTTE---
T ss_pred             CCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe-------CCCeEEEEECCCCc---
Confidence                  44666664 789999999887654333   45788999999999999886       57889999875432   


Q ss_pred             ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC--------CCcCceeeEEccCCCE
Q 004971          500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE--------GPWSDTMCNWSPDGEW  571 (721)
Q Consensus       500 ~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~--------~~~~~~~~~~SpDG~~  571 (721)
                        ....+... ..+..++|+|||++|+....    ..+.+|+++.+..  +..+..        +...+..++|||||++
T Consensus       230 --~~~~~~~~-~~v~~~~~sp~~~~la~~~~----~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  300 (319)
T 3frx_A          230 --AMYTLSAQ-DEVFSLAFSPNRYWLAAATA----TGIKVFSLDPQYL--VDDLRPEFAGYSKAAEPHAVSLAWSADGQT  300 (319)
T ss_dssp             --EEEEEECC-SCEEEEEECSSSSEEEEEET----TEEEEEEETTEEE--EEEECCCCTTCCGGGCCCEEEEEECTTSSE
T ss_pred             --EEEEecCC-CcEEEEEEcCCCCEEEEEcC----CCcEEEEeCcCee--eeccCccccccccCcCcceeEEEECCCCCE
Confidence              34444433 46788999999999988763    4588888876543  222221        1223567999999999


Q ss_pred             EEEEEccCCCCCCceeEEEEecCCC
Q 004971          572 IAFASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       572 l~~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                      |+.++.++       .|++||+.++
T Consensus       301 l~sg~~Dg-------~i~vWd~~t~  318 (319)
T 3frx_A          301 LFAGYTDN-------VIRVWQVMTA  318 (319)
T ss_dssp             EEEEETTS-------CEEEEEEEEC
T ss_pred             EEEeecCc-------eEEEEEEeec
Confidence            99998875       8999998653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.79  E-value=7.9e-17  Score=185.44  Aligned_cols=305  Identities=10%  Similarity=0.036  Sum_probs=200.5

Q ss_pred             ccCCe-EEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCC-------CCcccCceeecCCCCEEEEEEecCCCCe
Q 004971          275 VDEST-LFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPP-------GLHAFTPATSPGNNKFIAVATRRPTSSY  346 (721)
Q Consensus       275 s~dg~-l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~sp~dG~~la~~~~~~g~~~  346 (721)
                      ++||+ ++|...........||+....++        ..+.+...       ......++||| ||++|+|.....|.+.
T Consensus        80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~lld~~~l~~~~~~~~~~~~~SP-Dg~~la~~~~~~G~~~  150 (710)
T 2xdw_A           80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEG--------EARVFLDPNILSDDGTVALRGYAFSE-DGEYFAYGLSASGSDW  150 (710)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEESSTTS--------CCEEEECGGGGCTTSCEEEEEEEECT-TSSEEEEEEEETTCSC
T ss_pred             EEECCEEEEEEEcCCceEEEEEEEcCCCC--------CcEEEECHHHhccCCCEEEEEEEECC-CCCEEEEEEcCCCCce
Confidence            36765 56654333222346786554332        33333221       22456789999 9999999988877776


Q ss_pred             eeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC-------CCCCcceeEEEeccCCCCc-ceecc
Q 004971          347 RHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST-------REDGNNQLLLENIKSPLPD-ISLFR  418 (721)
Q Consensus       347 ~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~-~~~~~  418 (721)
                      ..|++||+++++.......   ......++|||||+.|+|.+.+....       ......+++++++.++... .....
T Consensus       151 ~~i~v~d~~tg~~~~~~~~---~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~  227 (710)
T 2xdw_A          151 VTIKFMKVDGAKELPDVLE---RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE  227 (710)
T ss_dssp             EEEEEEETTTTEEEEEEEE---EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC
T ss_pred             EEEEEEECCCCCCCccccc---CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEec
Confidence            7899999999986654321   22356799999999999988654310       0011246888888765322 11111


Q ss_pred             c---C--CCCceeCcCCCEEEEEe------CCcEEEEECCC------C--ceEEEe-ecCceeeEEcCCCCeEEEEecCC
Q 004971          419 F---D--GSFPSFSPKGDRIAFVE------FPGVYVVNSDG------S--NRRQVY-FKNAFSTVWDPVREAVVYTSGGP  478 (721)
Q Consensus       419 ~---~--~~~~~~SpDG~~la~~~------~~~l~v~d~~~------g--~~~~l~-~~~~~~~~~spdg~~la~~~~~~  478 (721)
                      .   .  ...+.|||||++|++..      ...|+++|+++      +  ..+.+. ........|+|||++|++.++. 
T Consensus       228 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~-  306 (710)
T 2xdw_A          228 FPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNR-  306 (710)
T ss_dssp             CTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECT-
T ss_pred             cCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECC-
Confidence            1   1  12578999999999883      46899999986      5  456666 2223345699999999999742 


Q ss_pred             CCCCCCCcEEEEEEEccCCCCccceEEcccCCC--CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC
Q 004971          479 EFASESSEVDIISINVDDVDGVSAVRRLTTNGK--NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG  556 (721)
Q Consensus       479 ~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~  556 (721)
                          ......|+.++.++.. ....+.+..+..  ....++|++ +.+|++....++..+|+++++.+|+.  +..+...
T Consensus       307 ----~~~~~~l~~~d~~~~~-~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~--~~~l~~~  378 (710)
T 2xdw_A          307 ----HSPNYRLINIDFTDPE-ESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGAL--LKIFPLE  378 (710)
T ss_dssp             ----TCTTCEEEEEETTSCC-GGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCE--EEEECCC
T ss_pred             ----CCCCCEEEEEeCCCCC-cccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCE--EEecCCC
Confidence                2346678888876530 012355555432  455678885 55677777777778999999966663  4566655


Q ss_pred             CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc--eEEeee
Q 004971          557 PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG--LRKLIQ  603 (721)
Q Consensus       557 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~--~~~l~~  603 (721)
                      ...+..++++||++.|++.....   .....||+||+.+++  .+.+..
T Consensus       379 ~~~v~~~~~s~d~~~l~~~~ss~---~~P~~i~~~d~~tg~~~~~~l~~  424 (710)
T 2xdw_A          379 VGSVVGYSGQKKDTEIFYQFTSF---LSPGIIYHCDLTKEELEPRVFRE  424 (710)
T ss_dssp             SSEEEEEECCTTCSEEEEEEECS---SCCCEEEEEETTSSSCCCEEEEE
T ss_pred             CceEEEEecCCCCCEEEEEEeCC---CCCCEEEEEECCCCccceEEeee
Confidence            55566788999999998876553   245689999999887  555543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.79  E-value=5.3e-17  Score=168.45  Aligned_cols=263  Identities=13%  Similarity=0.084  Sum_probs=175.1

Q ss_pred             eeEEEEECCCCceEEeecccCCCC-cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcc-eeccc-----
Q 004971          347 RHIELFDLVKNKFIELTRFVSPKT-HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI-SLFRF-----  419 (721)
Q Consensus       347 ~~l~l~dl~tg~~~~l~~~~~~~~-~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~-----  419 (721)
                      ..|++||+.+++........ ... ....++|+|||+.+++.....        ..++++++.++.... .....     
T Consensus        11 ~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~v~~~~~--------~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B           11 DKLVVIDTEKMAVDKVITIA-DAGPTPMVPMVAPGGRIAYATVNKS--------ESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECT-TCTTCCCCEEECTTSSEEEEEETTT--------TEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             CeEEEEECCCCcEEEEEEcC-CCCCCccceEEcCCCCEEEEEeCCC--------CeEEEEECCCCCeEeeEEcCCccccc
Confidence            45999999998754433221 111 366899999999988765432        357777776553211 11111     


Q ss_pred             -CCCCceeCcCCCEEEEEe-------------CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCC
Q 004971          420 -DGSFPSFSPKGDRIAFVE-------------FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASE  483 (721)
Q Consensus       420 -~~~~~~~SpDG~~la~~~-------------~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~  483 (721)
                       ....++|+|||++|++..             ...|++||+.+++.....  ...+..+.|+|||++|++..        
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--------  153 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG--------  153 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES--------
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeC--------
Confidence             455689999999998883             588999999988754433  44567899999999998872        


Q ss_pred             CCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCc---------------------eeEEEEEC
Q 004971          484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY---------------------KNLYIMDA  542 (721)
Q Consensus       484 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~---------------------~~l~~~d~  542 (721)
                       +.+.+|  +..+.   .....+.... ......|+|||++|++.....+.                     ..|++||+
T Consensus       154 -~~i~~~--d~~~~---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  226 (337)
T 1pby_B          154 -RDLHVM--DPEAG---TLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL  226 (337)
T ss_dssp             -SSEEEE--ETTTT---EEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred             -CeEEEE--ECCCC---cEeeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence             345554  44432   1223333322 22345899999988765432221                     16899999


Q ss_pred             CCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEE
Q 004971          543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI  622 (721)
Q Consensus       543 ~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l  622 (721)
                      .+++.. ...+.........++|+|||++|+++  +.       .|++||+.+++......  ....+..++|+|||++|
T Consensus       227 ~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~-------~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l  294 (337)
T 1pby_B          227 ETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YN-------VLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTV  294 (337)
T ss_dssp             TTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ES-------EEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEE
T ss_pred             CCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CC-------eEEEEECCCCcCcceec--CCCceeeEEECCCCCEE
Confidence            998742 12222233345679999999998888  22       79999999987665554  33457789999999998


Q ss_pred             EEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-Eec
Q 004971          623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLT  662 (721)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt  662 (721)
                      ++... .                +.|++||+++++.. .+.
T Consensus       295 ~~~~~-~----------------~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          295 WLGGA-L----------------GDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EEESB-S----------------SEEEEEETTTCCEEEEEE
T ss_pred             EEEcC-C----------------CcEEEEECcCCcEEEEEE
Confidence            87633 2                25999999887654 444

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.78  E-value=9.4e-17  Score=166.48  Aligned_cols=247  Identities=10%  Similarity=0.084  Sum_probs=160.0

Q ss_pred             CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce-EEeecccCCCCcccC-cEEcCCCCEEEEEEeeCCCCCCCCcce
Q 004971          324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF-IELTRFVSPKTHHLN-PFISPDSSRVGYHKCRGGSTREDGNNQ  401 (721)
Q Consensus       324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~-~~l~~~~~~~~~~~~-~~~Spdg~~l~~~~~~~~~~~~~~~~~  401 (721)
                      .++|+| ||+++++....    +..|++||+++++. .....  . ...... ++|+|||++|+ .....+..     ..
T Consensus        44 ~~~~s~-dg~~l~~~~~~----~~~i~~~d~~~~~~~~~~~~--~-~~~~~~~~~~s~dg~~l~-~~~~~~~~-----~~  109 (331)
T 3u4y_A           44 DTAITS-DCSNVVVTSDF----CQTLVQIETQLEPPKVVAIQ--E-GQSSMADVDITPDDQFAV-TVTGLNHP-----FN  109 (331)
T ss_dssp             EEEECS-SSCEEEEEEST----TCEEEEEECSSSSCEEEEEE--E-CSSCCCCEEECTTSSEEE-ECCCSSSS-----CE
T ss_pred             eEEEcC-CCCEEEEEeCC----CCeEEEEECCCCceeEEecc--c-CCCCccceEECCCCCEEE-EecCCCCc-----cc
Confidence            889999 99988776542    23699999999874 22221  1 233445 89999999998 33333210     25


Q ss_pred             eEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEe--CCc-EEEEECCCCc-eE-----EEe-ecCceeeEEcCCCCe
Q 004971          402 LLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVE--FPG-VYVVNSDGSN-RR-----QVY-FKNAFSTVWDPVREA  470 (721)
Q Consensus       402 l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~--~~~-l~v~d~~~g~-~~-----~l~-~~~~~~~~~spdg~~  470 (721)
                      ++++++..+.. ...........++|+|||++|++..  ... |++|+++... ..     .+. ......+.|+|||++
T Consensus       110 i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~  189 (331)
T 3u4y_A          110 MQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNF  189 (331)
T ss_dssp             EEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSE
T ss_pred             EEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCE
Confidence            77888765421 1111122234679999999887773  467 9999986432 21     111 345678999999999


Q ss_pred             EEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce
Q 004971          471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL  550 (721)
Q Consensus       471 la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~  550 (721)
                      ++++..      .++.+.+|++.....  ......+... .....++|+|||++|++...  +...|++||+.+++...+
T Consensus       190 l~v~~~------~~~~v~v~d~~~~~~--~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~--~~~~i~~~d~~~~~~~~~  258 (331)
T 3u4y_A          190 AFVANL------IGNSIGILETQNPEN--ITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE--STVDVFNFNQLSGTLSFV  258 (331)
T ss_dssp             EEEEET------TTTEEEEEECSSTTS--CEEEEEEECS-SCCCCEEECTTSSEEEEECS--SEEEEEEEETTTTEEEEE
T ss_pred             EEEEeC------CCCeEEEEECCCCcc--cceeeeccCC-CCCceEEECCCCCEEEEEEc--CCCEEEEEECCCCceeee
Confidence            988863      456777777653220  0014444433 46678999999999887754  256799999998874323


Q ss_pred             EECcCC----Cc---CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEe
Q 004971          551 HRLTEG----PW---SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL  601 (721)
Q Consensus       551 ~~l~~~----~~---~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l  601 (721)
                      ..+...    ..   ....++|+|||++|+++..+.      ..|.+||+.+.....+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~------~~v~v~d~~~~~~~~~  310 (331)
T 3u4y_A          259 KSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS------RELKVFTISGKVVGYV  310 (331)
T ss_dssp             EEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT------TEEEEEETTSCEEEEC
T ss_pred             cccccccccCCCCcccccceEECCCCCEEEEecCCC------CcEEEEEecCCcccce
Confidence            222221    11   123479999999998888653      3799999987654433

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.78  E-value=1.2e-16  Score=176.66  Aligned_cols=354  Identities=12%  Similarity=0.081  Sum_probs=224.1

Q ss_pred             ccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCC--cceeccCCeEEEEeccCCCCcEEEEEEec
Q 004971          222 AVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGG--WPCWVDESTLFFHRKSEEDDWISVYKVIL  299 (721)
Q Consensus       222 ~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~~  299 (721)
                      +++|+|+.++. ...+           ..|.+||..+++..........  ..+|+|||+.+|..  ..++.+.+|++..
T Consensus       144 ~~~p~~~~~vs-~~~d-----------~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~--~~d~~V~v~D~~~  209 (543)
T 1nir_A          144 DLDLPNLFSVT-LRDA-----------GQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVI--GRDARIDMIDLWA  209 (543)
T ss_dssp             CCCGGGEEEEE-EGGG-----------TEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEE--ETTSEEEEEETTS
T ss_pred             ccCCCCEEEEE-EcCC-----------CeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEE--CCCCeEEEEECcC
Confidence            58998865554 3222           4789999999987655432222  34799999876643  2357788885521


Q ss_pred             CCCcceeccccceEEeCCCCCcccCceeecC---CCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC---------
Q 004971          300 PQTGLVSTESVSIQRVTPPGLHAFTPATSPG---NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS---------  367 (721)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~---dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~---------  367 (721)
                      ....       ....+. .+.....++|||.   ||++|+.....    +..|.+||..+++.........         
T Consensus       210 ~t~~-------~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~----~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~  277 (543)
T 1nir_A          210 KEPT-------KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYW----PPQFAIMDGETLEPKQIVSTRGMTVDTQTYH  277 (543)
T ss_dssp             SSCE-------EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEE----SSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred             CCCc-------EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEcc----CCeEEEEeccccccceeecccCcccCccccc
Confidence            2211       222333 3445678889872   68888775433    2459999999987544332111         


Q ss_pred             CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceec--ccCCCCceeCcCCCEEEEEe--CCcEE
Q 004971          368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLF--RFDGSFPSFSPKGDRIAFVE--FPGVY  442 (721)
Q Consensus       368 ~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~--~~~~~~~~~SpDG~~la~~~--~~~l~  442 (721)
                      +...+..+.+||+++.+++... ..       ..+++++...... .+...  ......+.|+|||++++...  .+.|.
T Consensus       278 ~~~~v~~i~~s~~~~~~~vs~~-~~-------g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~  349 (543)
T 1nir_A          278 PEPRVAAIIASHEHPEFIVNVK-ET-------GKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVA  349 (543)
T ss_dssp             SCCCEEEEEECSSSSEEEEEET-TT-------TEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEE
T ss_pred             cCCceEEEEECCCCCEEEEEEC-CC-------CeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEE
Confidence            1124556889999998877543 33       4677887755321 11111  12244579999999887763  67899


Q ss_pred             EEECCCCceEEEee-c----CceeeE-EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC--CCccceEEcccCCCCCc
Q 004971          443 VVNSDGSNRRQVYF-K----NAFSTV-WDPVREAVVYTSGGPEFASESSEVDIISINVDDV--DGVSAVRRLTTNGKNNA  514 (721)
Q Consensus       443 v~d~~~g~~~~l~~-~----~~~~~~-~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~l~~~~~~~~  514 (721)
                      +||+.+++...... +    ...... ++|++..++++..     ..++.+.||.++..+.  .....++.+..+.....
T Consensus       350 v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~-----~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~  424 (543)
T 1nir_A          350 VIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH-----LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSL  424 (543)
T ss_dssp             EEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEB-----SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC
T ss_pred             EEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEecc-----CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCce
Confidence            99999988654332 1    111233 4788777766642     1357888998876321  01235667776666678


Q ss_pred             ceEEccCCCEEEEEEeeC----CceeEEEEECCCCcccceEEC--------cCCCcCceeeEEccCCCEEEEEEccCCCC
Q 004971          515 FPSVSPDGKWIVFRSTRT----GYKNLYIMDAEGGEGYGLHRL--------TEGPWSDTMCNWSPDGEWIAFASDRDNPG  582 (721)
Q Consensus       515 ~~~~SpDg~~l~~~s~~~----g~~~l~~~d~~~g~~~~~~~l--------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~  582 (721)
                      .++++|||++|++.+...    ....|.+||+++++.. .+.+        ..+...+.++.|+|||++|+++.....  
T Consensus       425 ~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~--  501 (543)
T 1nir_A          425 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK-YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGK--  501 (543)
T ss_dssp             CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC-CEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCT--
T ss_pred             EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC-eEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCC--
Confidence            899999999999876211    1458999999988742 1332        344455678999999999999864210  


Q ss_pred             CCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEE
Q 004971          583 SGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF  624 (721)
Q Consensus       583 ~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~  624 (721)
                      +....|.+||..++++.+....   ..    ..+|+|++-++
T Consensus       502 ~~~~~i~v~D~~t~~~~~~i~~---~~----~~~p~g~~~~~  536 (543)
T 1nir_A          502 NDSSALVVVDDKTLKLKAVVKD---PR----LITPTGKFNVY  536 (543)
T ss_dssp             TSCCEEEEEETTTTEEEEEECC---TT----CCSEEEEEEHH
T ss_pred             CCCCeEEEEECCCceEEEeecC---CC----ccCCCeeeecc
Confidence            1234899999999988776542   11    25688887544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.78  E-value=4.2e-17  Score=187.34  Aligned_cols=283  Identities=16%  Similarity=0.117  Sum_probs=200.0

Q ss_pred             EeCCCCCcccCceeecCCC-CEEEEEEecCCCCeeeEEEEECCCCce---EEeecccCCCCcccCcEEcCCCCEEEEEEe
Q 004971          314 RVTPPGLHAFTPATSPGNN-KFIAVATRRPTSSYRHIELFDLVKNKF---IELTRFVSPKTHHLNPFISPDSSRVGYHKC  389 (721)
Q Consensus       314 ~~~~~~~~~~~~~~sp~dG-~~la~~~~~~g~~~~~l~l~dl~tg~~---~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~  389 (721)
                      .+..|...+..++++| ++ +.|+..+     .+..|++||+.++..   ........|...+..++|+|||+.|+..+.
T Consensus       377 ~l~~H~~~V~~v~~~~-~~~~~l~s~s-----~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~  450 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPI-DNADIIVSAS-----RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW  450 (694)
T ss_dssp             EEECCSSCEEEEECCT-TCCSEEEEEE-----TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             hcccCCceeEEEEecC-CCCCEEEEEe-----CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC
Confidence            3556766788899999 76 5555533     445699999976431   122334566777889999999999988765


Q ss_pred             eCCCCCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe------ecCce
Q 004971          390 RGGSTREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY------FKNAF  460 (721)
Q Consensus       390 ~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~------~~~~~  460 (721)
                      ++.         +.++++..+..  .+.........++|+|||++|+..+ ++.|.+||+.+.....+.      ...+.
T Consensus       451 Dg~---------v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~  521 (694)
T 3dm0_A          451 DGE---------LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS  521 (694)
T ss_dssp             TSE---------EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEE
T ss_pred             CCc---------EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEE
Confidence            554         56666655421  1122223345679999999998885 789999998766554443      23467


Q ss_pred             eeEEcCCCC--eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEE
Q 004971          461 STVWDPVRE--AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLY  538 (721)
Q Consensus       461 ~~~~spdg~--~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~  538 (721)
                      .+.|+|++.  .|+..+       .++.++||++....     ....+..+...+..++|+|||++|+..+.   +..|+
T Consensus       522 ~~~~~~~~~~~~l~s~s-------~d~~v~vwd~~~~~-----~~~~~~~h~~~v~~v~~spdg~~l~sg~~---Dg~i~  586 (694)
T 3dm0_A          522 CVRFSPNTLQPTIVSAS-------WDKTVKVWNLSNCK-----LRSTLAGHTGYVSTVAVSPDGSLCASGGK---DGVVL  586 (694)
T ss_dssp             EEEECSCSSSCEEEEEE-------TTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEET---TSBCE
T ss_pred             EEEEeCCCCcceEEEEe-------CCCeEEEEECCCCc-----EEEEEcCCCCCEEEEEEeCCCCEEEEEeC---CCeEE
Confidence            899999983  566554       57899999876432     45667777778889999999999998887   78899


Q ss_pred             EEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC------------
Q 004971          539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS------------  606 (721)
Q Consensus       539 ~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~------------  606 (721)
                      +||+.+++.  +..+. ....+..++|+||+..|+.+...        .|++||+.+++.........            
T Consensus       587 iwd~~~~~~--~~~~~-~~~~v~~~~~sp~~~~l~~~~~~--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  655 (694)
T 3dm0_A          587 LWDLAEGKK--LYSLE-ANSVIHALCFSPNRYWLCAATEH--------GIKIWDLESKSIVEDLKVDLKAEAEKADNSGP  655 (694)
T ss_dssp             EEETTTTEE--EECCB-CSSCEEEEEECSSSSEEEEEETT--------EEEEEETTTTEEEEEECCCCC-----------
T ss_pred             EEECCCCce--EEEec-CCCcEEEEEEcCCCcEEEEEcCC--------CEEEEECCCCCChhhhcccccccccccccccc
Confidence            999998874  44443 34456889999999988776644        69999999886554332100            


Q ss_pred             ------CCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971          607 ------AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD  654 (721)
Q Consensus       607 ------~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  654 (721)
                            ...+..++|||||++|+..+.++                 .|.+|++.
T Consensus       656 ~~~~~~~~~~~~l~~spdg~~l~sgs~Dg-----------------~i~iW~i~  692 (694)
T 3dm0_A          656 AATKRKVIYCTSLNWSADGSTLFSGYTDG-----------------VIRVWGIG  692 (694)
T ss_dssp             -----CCCCEEEEEECTTSSEEEEEETTS-----------------EEEEEEC-
T ss_pred             ccCCceeEEeeeEEEcCCCCEEEEEcCCC-----------------eEEEEecc
Confidence                  01135688999999999877665                 38888874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.78  E-value=2.8e-17  Score=172.03  Aligned_cols=289  Identities=10%  Similarity=0.017  Sum_probs=194.3

Q ss_pred             CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCC---CCEEEEEEeeCCC
Q 004971          317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD---SSRVGYHKCRGGS  393 (721)
Q Consensus       317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd---g~~l~~~~~~~~~  393 (721)
                      .+...+..++|+| +++.++..... ...+..|.+||+.+++...+... .+...+..++|+|+   |+.|+....++. 
T Consensus        16 ~h~~~v~~~~~~p-~~~~l~~~~s~-~~~d~~v~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-   91 (357)
T 3i2n_A           16 GFNYTVFDCKWVP-CSAKFVTMGNF-ARGTGVIQLYEIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLATGDFGGN-   91 (357)
T ss_dssp             ECSSCEEEEEECT-TSSEEEEEEC---CCCEEEEEEEECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEEEETTSC-
T ss_pred             CCCCceEEEEEcC-CCceEEEecCc-cCCCcEEEEEeCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEEecCCCe-
Confidence            3555778999999 99877764322 11256799999999876544322 34567788999999   688887665544 


Q ss_pred             CCCCCcceeEEEeccCCCCcceecc---cCCCCc------eeCcCCCEEEEEe-CCcEEEEECCCCc--eEEEe--ec--
Q 004971          394 TREDGNNQLLLENIKSPLPDISLFR---FDGSFP------SFSPKGDRIAFVE-FPGVYVVNSDGSN--RRQVY--FK--  457 (721)
Q Consensus       394 ~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~------~~SpDG~~la~~~-~~~l~v~d~~~g~--~~~l~--~~--  457 (721)
                              +.++++......+....   .....+      +|+|+++.|+..+ ++.|.+||+..++  ...+.  .+  
T Consensus        92 --------i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  163 (357)
T 3i2n_A           92 --------LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN  163 (357)
T ss_dssp             --------EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC
T ss_pred             --------EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC
Confidence                    56666655431222221   112222      5789999998885 7889999998775  33333  11  


Q ss_pred             --CceeeE----EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc---CCCEEEEE
Q 004971          458 --NAFSTV----WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP---DGKWIVFR  528 (721)
Q Consensus       458 --~~~~~~----~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp---Dg~~l~~~  528 (721)
                        .+..+.    |+|+++.|+..+       .++.+.+|++...      .......+...+..++|+|   ++++|++.
T Consensus       164 ~~~v~~~~~~~~~~~~~~~l~~~~-------~d~~i~i~d~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  230 (357)
T 3i2n_A          164 KRDCWTVAFGNAYNQEERVVCAGY-------DNGDIKLFDLRNM------ALRWETNIKNGVCSLEFDRKDISMNKLVAT  230 (357)
T ss_dssp             CCCEEEEEEECCCC-CCCEEEEEE-------TTSEEEEEETTTT------EEEEEEECSSCEEEEEESCSSSSCCEEEEE
T ss_pred             CCceEEEEEEeccCCCCCEEEEEc-------cCCeEEEEECccC------ceeeecCCCCceEEEEcCCCCCCCCEEEEE
Confidence              445555    889999999886       4678888876542      3344455556788899999   99999988


Q ss_pred             EeeCCceeEEEEECCCCcccceE---ECcCCCcCceeeEEccCCC-EEEEEEccCCCCCCceeEEEEecCCCceE-----
Q 004971          529 STRTGYKNLYIMDAEGGEGYGLH---RLTEGPWSDTMCNWSPDGE-WIAFASDRDNPGSGSFEMYLIHPNGTGLR-----  599 (721)
Q Consensus       529 s~~~g~~~l~~~d~~~g~~~~~~---~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~i~~~d~~~~~~~-----  599 (721)
                      +.   +..|++||+.+++.....   .+..+...+..++|+|+|+ .|+.+..++       .|++||+..+...     
T Consensus       231 ~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~  300 (357)
T 3i2n_A          231 SL---EGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG-------GLHLWKYEYPIQRSKKDS  300 (357)
T ss_dssp             ES---TTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS-------EEEEEEEECCSCC--CCT
T ss_pred             CC---CCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC-------cEEEeecCCCcccccccC
Confidence            76   778999999876541111   1225566778999999999 566666664       8999998754321     


Q ss_pred             ------------Ee-eecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971          600 ------------KL-IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       600 ------------~l-~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~  656 (721)
                                  .+ ....+...+..++|+|||++|+++...++                .|++||+...
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~----------------~i~iw~~~~~  354 (357)
T 3i2n_A          301 EGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ----------------TVRVLIVTKL  354 (357)
T ss_dssp             TSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS----------------EEEEEEECC-
T ss_pred             CCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC----------------cEEEEECCCc
Confidence                        11 11236677889999999999986555443                4999998754

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.78  E-value=1.4e-16  Score=167.63  Aligned_cols=297  Identities=10%  Similarity=0.058  Sum_probs=176.8

Q ss_pred             EEEEEEecCCCCeeeEEEE--ECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC-
Q 004971          334 FIAVATRRPTSSYRHIELF--DLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP-  410 (721)
Q Consensus       334 ~la~~~~~~g~~~~~l~l~--dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-  410 (721)
                      +.+|+..........|++|  |.++++...+...  +......++|||||++|++....+...   +...+|..+..++ 
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~---~~v~~~~~~~~~g~   88 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQ---AAVSAFAFDKEKGT   88 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTT---CEEEEEEEETTTTE
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCC---CcEEEEEEeCCCCc
Confidence            3344433333333445555  5677876666543  345566789999999999887652110   1133344443322 


Q ss_pred             CCcceecccCCCC-ceeCcCCCEEEEEe--CCcEEEEECCCC-ceEEE----e-ec-----------CceeeEEcCCCCe
Q 004971          411 LPDISLFRFDGSF-PSFSPKGDRIAFVE--FPGVYVVNSDGS-NRRQV----Y-FK-----------NAFSTVWDPVREA  470 (721)
Q Consensus       411 ~~~~~~~~~~~~~-~~~SpDG~~la~~~--~~~l~v~d~~~g-~~~~l----~-~~-----------~~~~~~~spdg~~  470 (721)
                      ...+......... ..++.||++|++..  .+.+.+|++... ....+    . .+           .+..++|+|||++
T Consensus        89 ~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~  168 (361)
T 3scy_A           89 LHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY  168 (361)
T ss_dssp             EEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred             EEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence            1122222211211 22334899888874  667999998643 22111    1 11           1245899999999


Q ss_pred             EEEEecCCCCCCCCCcEEEEEEEccCCCCccc-e------EEc-ccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEEC
Q 004971          471 VVYTSGGPEFASESSEVDIISINVDDVDGVSA-V------RRL-TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA  542 (721)
Q Consensus       471 la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~------~~l-~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~  542 (721)
                      |+++..      .++.+.+|.++..+.....+ .      ..+ .........++|+|||++|++....  ...|++|++
T Consensus       169 l~~~~~------~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~--~~~v~v~~~  240 (361)
T 3scy_A          169 LLADDL------GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI--GGTVIAFRY  240 (361)
T ss_dssp             EEEEET------TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT--TCEEEEEEE
T ss_pred             EEEEeC------CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC--CCeEEEEEe
Confidence            998863      45788889887654100001 1      111 1222355678999999999888743  457889998


Q ss_pred             CCCcccceEECcC---CCcCceeeEEccCCCEEEEEEcc-CCCCCCceeEEEEecC--CCceEEeeecCCCCCcCCeEEC
Q 004971          543 EGGEGYGLHRLTE---GPWSDTMCNWSPDGEWIAFASDR-DNPGSGSFEMYLIHPN--GTGLRKLIQSGSAGRANHPYFS  616 (721)
Q Consensus       543 ~~g~~~~~~~l~~---~~~~~~~~~~SpDG~~l~~~~~~-~~~~~~~~~i~~~d~~--~~~~~~l~~~~~~~~~~~~~~S  616 (721)
                      ++++...+..+..   +......++|||||++|+++... .      ..|.+|+++  +++.+.+...........++||
T Consensus       241 ~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~------~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~s  314 (361)
T 3scy_A          241 ADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA------DGVAIFKVDETNGTLTKVGYQLTGIHPRNFIIT  314 (361)
T ss_dssp             ETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS------CEEEEEEECTTTCCEEEEEEEECSSCCCEEEEC
T ss_pred             cCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC------CEEEEEEEcCCCCcEEEeeEecCCCCCceEEEC
Confidence            8776432333322   12234589999999999877654 2      267777764  5665544332123456789999


Q ss_pred             CCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          617 PDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       617 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      |||++|+++....+.-              .+|.+|.++++++.+..
T Consensus       315 pdg~~l~~~~~~~~~v--------------~v~~~d~~~g~~~~~~~  347 (361)
T 3scy_A          315 PNGKYLLVACRDTNVI--------------QIFERDQATGLLTDIKK  347 (361)
T ss_dssp             TTSCEEEEEETTTTEE--------------EEEEECTTTCCEEECSC
T ss_pred             CCCCEEEEEECCCCCE--------------EEEEEECCCCcEeecce
Confidence            9999998887554321              36667888888877753

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.78  E-value=1.9e-16  Score=175.19  Aligned_cols=335  Identities=12%  Similarity=0.069  Sum_probs=207.3

Q ss_pred             eeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEE
Q 004971          273 CWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELF  352 (721)
Q Consensus       273 ~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~  352 (721)
                      .++|++++|++.  ..++.+.+|+.  .. +       +.......+..++.++||| ||++|+..+..     ..|.+|
T Consensus       144 ~~~p~~~~~vs~--~~d~~V~v~D~--~t-~-------~~~~~i~~g~~~~~v~~sp-dg~~l~v~~~d-----~~V~v~  205 (543)
T 1nir_A          144 DLDLPNLFSVTL--RDAGQIALVDG--DS-K-------KIVKVIDTGYAVHISRMSA-SGRYLLVIGRD-----ARIDMI  205 (543)
T ss_dssp             CCCGGGEEEEEE--GGGTEEEEEET--TT-C-------CEEEEEECSTTEEEEEECT-TSCEEEEEETT-----SEEEEE
T ss_pred             ccCCCCEEEEEE--cCCCeEEEEEC--CC-c-------eEEEEEecCcccceEEECC-CCCEEEEECCC-----CeEEEE
Confidence            577888777743  33577777732  22 2       2322222222367788999 99998876432     559999


Q ss_pred             EC--CCCceEEeecccCCCCcccCcEEcC----CCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC--cceecc------
Q 004971          353 DL--VKNKFIELTRFVSPKTHHLNPFISP----DSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DISLFR------  418 (721)
Q Consensus       353 dl--~tg~~~~l~~~~~~~~~~~~~~~Sp----dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~------  418 (721)
                      |+  .+++...  ... .......++|||    ||++|+.......        .+.+++..+...  .+....      
T Consensus       206 D~~~~t~~~~~--~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~--------~v~v~D~~t~~~~~~i~~~g~~~~~~  274 (543)
T 1nir_A          206 DLWAKEPTKVA--EIK-IGIEARSVESSKFKGYEDRYTIAGAYWPP--------QFAIMDGETLEPKQIVSTRGMTVDTQ  274 (543)
T ss_dssp             ETTSSSCEEEE--EEE-CCSEEEEEEECCSTTCTTTEEEEEEEESS--------EEEEEETTTCCEEEEEECCEECSSSC
T ss_pred             ECcCCCCcEEE--EEe-cCCCcceEEeCCCcCCCCCEEEEEEccCC--------eEEEEeccccccceeecccCcccCcc
Confidence            99  7766332  222 244567899999    9999988776543        355555543311  111000      


Q ss_pred             -----cCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceE---EEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcE
Q 004971          419 -----FDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRR---QVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEV  487 (721)
Q Consensus       419 -----~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~---~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  487 (721)
                           .....+.+||++..+++.  ..+.|++||..+.+..   .+. ...+..+.|+|||+++++++.      .++.+
T Consensus       275 ~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~------~~~~v  348 (543)
T 1nir_A          275 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAAN------NSNKV  348 (543)
T ss_dssp             CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEG------GGTEE
T ss_pred             ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEec------CCCeE
Confidence                 012346889999887776  3678999999876532   232 345678999999999988763      35667


Q ss_pred             EEEEEEccCCCCccceEEcccCC--CCCcceE-EccCCCEEEEEEeeCCceeEEEEECCC-------CcccceEECcCCC
Q 004971          488 DIISINVDDVDGVSAVRRLTTNG--KNNAFPS-VSPDGKWIVFRSTRTGYKNLYIMDAEG-------GEGYGLHRLTEGP  557 (721)
Q Consensus       488 ~i~~~~~~~~~~~~~~~~l~~~~--~~~~~~~-~SpDg~~l~~~s~~~g~~~l~~~d~~~-------g~~~~~~~l~~~~  557 (721)
                      .+|+.  .++   .....+....  ....... ++|++..+++++. .++..|.+||.++       .+.  +..+..+.
T Consensus       349 ~v~D~--~tg---~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~-~~d~~V~v~d~~~~~~~~~~~~~--v~~l~~~g  420 (543)
T 1nir_A          349 AVIDS--KDR---RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH-LGDGSISLIGTDPKNHPQYAWKK--VAELQGQG  420 (543)
T ss_dssp             EEEET--TTT---EEEEEEECSSSBCCTTCEEEEETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSE--EEEEECSC
T ss_pred             EEEEC--CCC---eEEEeeccCCCCCCCCCcccCCCCCccEEEecc-CCCceEEEEEeCCCCCchhcCeE--EEEEEcCC
Confidence            77554  332   1233343221  1112233 4788777655542 2356899999987       443  66666554


Q ss_pred             cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE-Eeee-------cCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          558 WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR-KLIQ-------SGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       558 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~-------~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      .....+.++|||++|+....-.........|.+||+++++.. +...       ..+...+.++.|+|||++|+++....
T Consensus       421 ~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~  500 (543)
T 1nir_A          421 GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG  500 (543)
T ss_dssp             SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECC
T ss_pred             CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecC
Confidence            445679999999999887621100001238999999988754 3321       11345678899999999999875421


Q ss_pred             CCcCCCCCCCCCCCCCccEEEEEcCCCCeEEec
Q 004971          630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT  662 (721)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt  662 (721)
                      ...            .+.|.+||.++++++..-
T Consensus       501 ~~~------------~~~i~v~D~~t~~~~~~i  521 (543)
T 1nir_A          501 KND------------SSALVVVDDKTLKLKAVV  521 (543)
T ss_dssp             TTS------------CCEEEEEETTTTEEEEEE
T ss_pred             CCC------------CCeEEEEECCCceEEEee
Confidence            100            135999999998876443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.77  E-value=2e-16  Score=162.69  Aligned_cols=284  Identities=10%  Similarity=0.044  Sum_probs=200.7

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      ....++||+ ++ .|+...      +..|++||+++++...+.....+...+..++|+|+|+.|+..+.++.        
T Consensus        27 y~~~l~WS~-~~-~lAvg~------D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~--------   90 (318)
T 4ggc_A           27 YLNLVDWSS-GN-VLAVAL------DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE--------   90 (318)
T ss_dssp             TCBCEEECT-TS-EEEEEE------TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSE--------
T ss_pred             cceEEEECC-CC-EEEEEe------CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCc--------
Confidence            345689999 87 666642      34599999999987666555566777889999999999998765554        


Q ss_pred             eeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEE--Ee--ecCceeeEEcCCCCeEEEEe
Q 004971          401 QLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQ--VY--FKNAFSTVWDPVREAVVYTS  475 (721)
Q Consensus       401 ~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~--l~--~~~~~~~~~spdg~~la~~~  475 (721)
                       +.++++..+...............++++++.++... ...+.+++...+....  +.  ...+....++++++.|+..+
T Consensus        91 -v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  169 (318)
T 4ggc_A           91 -VQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG  169 (318)
T ss_dssp             -EEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             -EEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEe
Confidence             556666554221122222233356778888887775 6677888877655332  22  45677889999999999876


Q ss_pred             cCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC
Q 004971          476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE  555 (721)
Q Consensus       476 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~  555 (721)
                             .++.+.||++..... ..............+....++|++..++..........|.+||...+.   ......
T Consensus       170 -------~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~---~~~~~~  238 (318)
T 4ggc_A          170 -------NDNLVNVWPSAPGEG-GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA---CLSAVD  238 (318)
T ss_dssp             -------TTSCEEEEESSCBTT-BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC---EEEEEE
T ss_pred             -------cCcceeEEECCCCcc-cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc---cccccc
Confidence                   578899998765432 001223333344566778999998888776655556789999998876   333334


Q ss_pred             CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCC
Q 004971          556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP  635 (721)
Q Consensus       556 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~  635 (721)
                      ....+....|+|+++.+++++...     ...|++||+.+++...... +|...+..++|+|||++|+..+.++      
T Consensus       239 ~~~~v~~~~~~~~~~~~~~~sg~~-----d~~i~iwd~~~~~~~~~l~-gH~~~V~~l~~spdg~~l~S~s~D~------  306 (318)
T 4ggc_A          239 AHSQVCSILWSPHYKELISGHGFA-----QNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADE------  306 (318)
T ss_dssp             CSSCEEEEEEETTTTEEEEEECTT-----TCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTT------
T ss_pred             ceeeeeeeeecccccceEEEEEcC-----CCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCC------
Confidence            445567899999999998877431     2379999999988766554 3788899999999999999877765      


Q ss_pred             CCCCCCCCCCccEEEEEcCC
Q 004971          636 ISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       636 ~~~~~~~~~~~~l~~~d~~~  655 (721)
                                 .|.+||+..
T Consensus       307 -----------~v~iWd~~~  315 (318)
T 4ggc_A          307 -----------TLRLWRCFE  315 (318)
T ss_dssp             -----------EEEEECCSC
T ss_pred             -----------eEEEEECCC
Confidence                       388998754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.77  E-value=1.7e-16  Score=162.79  Aligned_cols=279  Identities=8%  Similarity=0.013  Sum_probs=195.5

Q ss_pred             eEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeC
Q 004971          312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRG  391 (721)
Q Consensus       312 ~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~  391 (721)
                      ...+..+...+..++| | ++++|+...     .++.|.+||+.+++.....  ..+...+..++|+|+++.|+....++
T Consensus        11 ~~~l~~h~~~v~~~~~-~-~~~~l~s~~-----~dg~v~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg   81 (313)
T 3odt_A           11 SATLKGHDQDVRDVVA-V-DDSKVASVS-----RDGTVRLWSKDDQWLGTVV--YTGQGFLNSVCYDSEKELLLFGGKDT   81 (313)
T ss_dssp             EEEECCCSSCEEEEEE-E-ETTEEEEEE-----TTSEEEEEEESSSEEEEEE--EECSSCEEEEEEETTTTEEEEEETTS
T ss_pred             HHHhhCCCCCcEEEEe-c-CCCEEEEEE-----cCCcEEEEECCCCEEEEEe--ecCCccEEEEEECCCCCEEEEecCCC
Confidence            3445566667788889 8 999888754     3456999999887644333  34567788899999999999876655


Q ss_pred             CCCCCCCcceeEEEeccCCC--Ccceec---ccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCce-EEEe--ecCceee
Q 004971          392 GSTREDGNNQLLLENIKSPL--PDISLF---RFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNR-RQVY--FKNAFST  462 (721)
Q Consensus       392 ~~~~~~~~~~l~~~~~~~~~--~~~~~~---~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~-~~l~--~~~~~~~  462 (721)
                      .         +.++++....  ..+...   ......+.|  +++.++..+ ++.|.+||  .++. ..+.  ...+..+
T Consensus        82 ~---------i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~  148 (313)
T 3odt_A           82 M---------INGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDA  148 (313)
T ss_dssp             C---------EEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEE
T ss_pred             e---------EEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEE
Confidence            4         4445543321  111111   111222344  677887774 78899999  3332 3333  4567788


Q ss_pred             EEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEE
Q 004971          463 VWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM  540 (721)
Q Consensus       463 ~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~  540 (721)
                      .|+| +++.++..+       .++.+.+|+  ..     .....+.. +...+..++|+|+++ |+..+.   +..|++|
T Consensus       149 ~~~~~~~~~l~~~~-------~d~~i~i~d--~~-----~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~---dg~i~i~  210 (313)
T 3odt_A          149 KVVSFSENKFLTAS-------ADKTIKLWQ--ND-----KVIKTFSGIHNDVVRHLAVVDDGH-FISCSN---DGLIKLV  210 (313)
T ss_dssp             EEEETTTTEEEEEE-------TTSCEEEEE--TT-----EEEEEECSSCSSCEEEEEEEETTE-EEEEET---TSEEEEE
T ss_pred             EEccCCCCEEEEEE-------CCCCEEEEe--cC-----ceEEEEeccCcccEEEEEEcCCCe-EEEccC---CCeEEEE
Confidence            8888 899888876       568899997  21     14445554 556778899999998 766665   6789999


Q ss_pred             ECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCC
Q 004971          541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK  620 (721)
Q Consensus       541 d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~  620 (721)
                      |+.+++.  +..+..+...+..++|+|||+ |+.+..++       .|++||+.+++....... +...+..+.|+|||+
T Consensus       211 d~~~~~~--~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg-------~v~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~  279 (313)
T 3odt_A          211 DMHTGDV--LRTYEGHESFVYCIKLLPNGD-IVSCGEDR-------TVRIWSKENGSLKQVITL-PAISIWSVDCMSNGD  279 (313)
T ss_dssp             ETTTCCE--EEEEECCSSCEEEEEECTTSC-EEEEETTS-------EEEEECTTTCCEEEEEEC-SSSCEEEEEECTTSC
T ss_pred             ECCchhh--hhhhhcCCceEEEEEEecCCC-EEEEecCC-------EEEEEECCCCceeEEEec-cCceEEEEEEccCCC
Confidence            9998875  556666667788999999994 77777664       899999999887666553 566788999999999


Q ss_pred             EEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971          621 SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK  659 (721)
Q Consensus       621 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  659 (721)
                      . +..+.++                 .|++||+.+++..
T Consensus       280 ~-~~~~~dg-----------------~i~iw~~~~~~~~  300 (313)
T 3odt_A          280 I-IVGSSDN-----------------LVRIFSQEKSRWA  300 (313)
T ss_dssp             E-EEEETTS-----------------CEEEEESCGGGCC
T ss_pred             E-EEEeCCC-----------------cEEEEeCCCCcee
Confidence            4 4444433                 4999999877543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.77  E-value=2.8e-16  Score=163.45  Aligned_cols=279  Identities=12%  Similarity=0.055  Sum_probs=172.3

Q ss_pred             eeeEEEEECC-CCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEecc--CCCC-cceec--cc
Q 004971          346 YRHIELFDLV-KNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK--SPLP-DISLF--RF  419 (721)
Q Consensus       346 ~~~l~l~dl~-tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~--~~~~-~~~~~--~~  419 (721)
                      +..|++||+. +++...+... .+...+..++|+|||++|++......        .+.++++.  ++.. .+...  ..
T Consensus        14 ~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~~~~~   84 (343)
T 1ri6_A           14 SQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEF--------RVLAYRIAPDDGALTFAAESALPG   84 (343)
T ss_dssp             GTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTT--------EEEEEEECTTTCCEEEEEEEECSS
T ss_pred             CCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCC--------eEEEEEecCCCCceeeccccccCC
Confidence            4569999985 4443333322 23455678999999999988765422        34454444  3321 11111  12


Q ss_pred             CCCCceeCcCCCEEEEEe--CCcEEEEECCCCc---eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971          420 DGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSN---RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI  492 (721)
Q Consensus       420 ~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~---~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~  492 (721)
                      ....++|+|||++|++..  .+.|.+|++..+.   .....  ...+..++|+|||++|+++..      .++.+.+|++
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~v~~~d~  158 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL------KQDRICLFTV  158 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG------GGTEEEEEEE
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecC------CCCEEEEEEe
Confidence            345678999999988874  5679999995332   22222  345778999999999988762      3567888888


Q ss_pred             EccCCCCccceE--EcccC-CCCCcceEEccCCCEEEEEEeeCCceeEEEEECC--CCcccceEEC---cCC---CcCce
Q 004971          493 NVDDVDGVSAVR--RLTTN-GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE--GGEGYGLHRL---TEG---PWSDT  561 (721)
Q Consensus       493 ~~~~~~~~~~~~--~l~~~-~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~--~g~~~~~~~l---~~~---~~~~~  561 (721)
                      ..++.  .....  .+... ......++|+|||++|++....  ...|++|+++  +++......+   ..+   .....
T Consensus       159 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~--~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  234 (343)
T 1ri6_A          159 SDDGH--LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL--NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA  234 (343)
T ss_dssp             CTTSC--EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT--TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred             cCCCc--eeeecccccccCCCCCcceEEECCCCCEEEEEeCC--CCEEEEEEecCCCCcEEEEeeccccCccccccCCcc
Confidence            65331  00111  22222 2345668999999999887643  5678899984  3542212222   111   12234


Q ss_pred             eeEEccCCCEEEEEEccCCCCCCceeEEEEecC--CCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCC
Q 004971          562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN--GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTP  639 (721)
Q Consensus       562 ~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~--~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~  639 (721)
                      .++|+|||++|+++....      ..|++|+++  +++.+.+........+..++|+|||++|++.....+.        
T Consensus       235 ~i~~s~dg~~l~v~~~~~------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~--------  300 (343)
T 1ri6_A          235 DIHITPDGRHLYACDRTA------SLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHH--------  300 (343)
T ss_dssp             EEEECTTSSEEEEEETTT------TEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCE--------
T ss_pred             ceEECCCCCEEEEEecCC------CEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCe--------
Confidence            689999999998776432      278999887  5444443222123447889999999999887754432        


Q ss_pred             CCCCCCccEEEEEcCCCCeEEecc
Q 004971          640 HQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       640 ~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                            -.+|.+|.++++.+++..
T Consensus       301 ------v~v~~~d~~~g~~~~~~~  318 (343)
T 1ri6_A          301 ------ISVYEIVGEQGLLHEKGR  318 (343)
T ss_dssp             ------EEEEEEETTTTEEEEEEE
T ss_pred             ------EEEEEEcCCCceeeEccc
Confidence                  124445777887766654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.76  E-value=1.9e-17  Score=177.44  Aligned_cols=256  Identities=10%  Similarity=0.007  Sum_probs=173.4

Q ss_pred             CcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971          320 LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN  399 (721)
Q Consensus       320 ~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~  399 (721)
                      ..+..++||| ||+.+|.+     +.+..|.  |.+.++  .+   .+|...+..++|+|||       ..+...     
T Consensus        16 ~~v~sv~~Sp-DG~~iASa-----s~D~TV~--d~~~~~--~l---~gh~~~v~~V~FsPdg-------~~~~~~-----   70 (588)
T 2j04_A           16 DWKNNLTWAR-DGTLYLTT-----FPDISIG--QPKYAK--DI---NCNSKNLFHVKEFPLE-------FENKLD-----   70 (588)
T ss_dssp             SSSCCEEECT-TSCEEEEC-----SSSEEEE--EECCCS--CC---SSBGGGTEEEEEECCC-------CCCTTT-----
T ss_pred             ccEEEEEECC-CCCEEEEE-----cCCceee--cccccc--ee---cCCCccEEEEEECCCC-------CcceEE-----
Confidence            4678999999 99999884     3455565  765554  22   4567788899999999       112111     


Q ss_pred             ceeEEEeccCCCCcce-ecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEeec------CceeeEEcCCCCeE
Q 004971          400 NQLLLENIKSPLPDIS-LFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVYFK------NAFSTVWDPVREAV  471 (721)
Q Consensus       400 ~~l~~~~~~~~~~~~~-~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~~~------~~~~~~~spdg~~l  471 (721)
                        ++  +.. +...+. ........++|||||++||..+ ++.+.+|+.++ ....+...      .+..++|||||++|
T Consensus        71 --~~--~~~-~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~~~~~~~~~sv~svafSPDG~~L  144 (588)
T 2j04_A           71 --FE--LAQ-QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLDSKGNLSSRTYHCFEWNPIESSI  144 (588)
T ss_dssp             --TS--CCC-SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECCCSSCSTTTCEEEEEECSSSSCE
T ss_pred             --EE--eCC-CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeeccCCCccccccEEEEEEcCCCCEE
Confidence              11  001 111111 0122244579999999999985 78899999654 22222211      36789999999999


Q ss_pred             EEEecCCCCCCCCCcEEEEEEEccCCCCc--cceEEc----ccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCC
Q 004971          472 VYTSGGPEFASESSEVDIISINVDDVDGV--SAVRRL----TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG  545 (721)
Q Consensus       472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~l----~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g  545 (721)
                      |.++       .++.++||++....-.+.  .....+    ..+...+..++|||||  |+..+.   +..+++||++++
T Consensus       145 Asgs-------~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~---D~tVrlWd~~~~  212 (588)
T 2j04_A          145 VVGN-------EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS---NNSVFSMTVSAS  212 (588)
T ss_dssp             EEEE-------TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET---TCCEEEECCCSS
T ss_pred             EEEc-------CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC---CCeEEEEECCCC
Confidence            9997       689999999875320000  013444    3344678889999999  666665   789999999987


Q ss_pred             ccc-ceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEE--CCCCCE
Q 004971          546 EGY-GLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF--SPDGKS  621 (721)
Q Consensus       546 ~~~-~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~--SpDG~~  621 (721)
                      +.. ....+. .+...+..++|+  |+.|+.++. +       .|++||+.+++...+.. ++...+..++|  ||||+.
T Consensus       213 ~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~-~-------tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~~  281 (588)
T 2j04_A          213 SHQPVSRMIQNASRRKITDLKIV--DYKVVLTCP-G-------YVHKIDLKNYSISSLKT-GSLENFHIIPLNHEKESTI  281 (588)
T ss_dssp             SSCCCEEEEECCCSSCCCCEEEE--TTEEEEECS-S-------EEEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCEE
T ss_pred             ccccceeeecccccCcEEEEEEE--CCEEEEEeC-C-------eEEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCCE
Confidence            731 123342 445667899999  688888764 3       89999999887655543 47788899999  999988


Q ss_pred             EEEEEecC
Q 004971          622 IVFTSDYG  629 (721)
Q Consensus       622 l~~~~~~~  629 (721)
                      |+.+..++
T Consensus       282 La~a~edG  289 (588)
T 2j04_A          282 LLMSNKTS  289 (588)
T ss_dssp             EEECSSCE
T ss_pred             EEEEcCCC
Confidence            87765444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.76  E-value=3.4e-17  Score=171.13  Aligned_cols=263  Identities=14%  Similarity=0.205  Sum_probs=173.2

Q ss_pred             ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeC------CcEEEEE
Q 004971          372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEF------PGVYVVN  445 (721)
Q Consensus       372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~------~~l~v~d  445 (721)
                      +..+.+  ||++|+|...............+++.++.++..  ... .....+.|||||++|+|...      ..|++++
T Consensus        17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l-~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~   91 (347)
T 2gop_A           17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR--RFI-ENATMPRISPDGKKIAFMRANEEKKVSEIWVAD   91 (347)
T ss_dssp             EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE--EEE-ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEE
T ss_pred             cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce--EEc-ccCCCeEECCCCCEEEEEEeccCCCcceEEEEE
Confidence            345677  999999976543211111125688888876532  222 34556899999999999842      2499999


Q ss_pred             CCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCC------------CC-C-----CCCcEEEEEEEccCCCCccce-E
Q 004971          446 SDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPE------------FA-S-----ESSEVDIISINVDDVDGVSAV-R  504 (721)
Q Consensus       446 ~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~------------~~-~-----~~~~~~i~~~~~~~~~~~~~~-~  504 (721)
                      +++++.+++.  .. +..+.|||||++|++.+....            +. .     ......||.++..++    +. +
T Consensus        92 ~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~----~~~~  166 (347)
T 2gop_A           92 LETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE----EVIE  166 (347)
T ss_dssp             TTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT----EEEE
T ss_pred             CCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC----eEEe
Confidence            9999887777  33 788999999999999874210            00 0     012467888888764    55 6


Q ss_pred             EcccCCCCCcceEEccCCCEEEEEEeeCC-------ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971          505 RLTTNGKNNAFPSVSPDGKWIVFRSTRTG-------YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       505 ~l~~~~~~~~~~~~SpDg~~l~~~s~~~g-------~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~  577 (721)
                      .++. . ....++|||||  +++......       ..+||++|  +++   ...++.+ ....  .+||||++|++...
T Consensus       167 ~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~---~~~l~~~-~~~~--~~spdg~~l~~~~~  234 (347)
T 2gop_A          167 EFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK---EEKMFEK-VSFY--AVDSDGERILLYGK  234 (347)
T ss_dssp             EEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE---EEEEEEE-ESEE--EEEECSSCEEEEEC
T ss_pred             eecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc---eEEeccC-ccee--eECCCCCEEEEEEc
Confidence            6666 4 67789999999  666654432       45899999  666   5555544 3333  34999999999886


Q ss_pred             cCCC-CCCceeEEEEecCCCceEEeeecCCCCCcCC-eEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971          578 RDNP-GSGSFEMYLIHPNGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       578 ~~~~-~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~-~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                      .... ......||++|  +++.+.++.. +...+.. +.|+ ||  +++.....+.              .+|| ++  +
T Consensus       235 ~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~~~~~~s-dg--~~~~~~~~~~--------------~~l~-~~--~  291 (347)
T 2gop_A          235 PEKKYMSEHNKLYIYD--GKEVMGILDE-VDRGVGQAKIKD-GK--VYFTLFEEGS--------------VNLY-IW--D  291 (347)
T ss_dssp             CSSSCCCSSCEEEEEC--SSCEEESSTT-CCSEEEEEEEET-TE--EEEEEEETTE--------------EEEE-EE--S
T ss_pred             cccCCccccceEEEEC--CCceEecccc-CCcccCCccEEc-Cc--EEEEEecCCc--------------EEEE-Ec--C
Confidence            5310 01245899999  6666666542 3445565 8999 98  5555544432              2588 87  4


Q ss_pred             CCeEEeccCCCCCCCceecCCcCCc
Q 004971          656 SDLKRLTQNSFEDGTPAWGPRFIRP  680 (721)
Q Consensus       656 ~~~~~lt~~~~~~~~~~~sp~~l~~  680 (721)
                      ++.++++.+.+.+..++|+| .++.
T Consensus       292 g~~~~~~~~~~~v~~~~~s~-~~~~  315 (347)
T 2gop_A          292 GEIKPIAKGRHWIMGFDVDE-IVVY  315 (347)
T ss_dssp             SSEEEEECSSSEEEEEEESS-SEEE
T ss_pred             CceEEEecCCCeEEeeeeeC-cEEE
Confidence            56677776655567788998 4433

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.76  E-value=3.2e-16  Score=181.12  Aligned_cols=303  Identities=12%  Similarity=0.008  Sum_probs=201.0

Q ss_pred             eecCCCCEEEEEEecCCCCeeeEEEEECC---CCceEEeeccc----CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971          327 TSPGNNKFIAVATRRPTSSYRHIELFDLV---KNKFIELTRFV----SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN  399 (721)
Q Consensus       327 ~sp~dG~~la~~~~~~g~~~~~l~l~dl~---tg~~~~l~~~~----~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~  399 (721)
                      .+| ||++++|.....+.....||+.+..   +++.+.+....    .+......++|||||++|+|....++..    .
T Consensus       114 p~p-dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e----~  188 (741)
T 1yr2_A          114 PQR-RGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSD----W  188 (741)
T ss_dssp             CEE-ETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCS----E
T ss_pred             CEE-ECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCc----e
Confidence            358 9999999887766556778999986   66655543221    1112456789999999999988775521    1


Q ss_pred             ceeEEEeccCCCCcc-eecccCCCCceeCcCCCEEEEEe---------------CCcEEEEECCCCce--EEEee--c--
Q 004971          400 NQLLLENIKSPLPDI-SLFRFDGSFPSFSPKGDRIAFVE---------------FPGVYVVNSDGSNR--RQVYF--K--  457 (721)
Q Consensus       400 ~~l~~~~~~~~~~~~-~~~~~~~~~~~~SpDG~~la~~~---------------~~~l~v~d~~~g~~--~~l~~--~--  457 (721)
                      ..+++.++.++.... .........++|||| +.|+|..               ...|+++++.++..  +.+..  .  
T Consensus       189 ~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~  267 (741)
T 1yr2_A          189 RTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELP  267 (741)
T ss_dssp             EEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCT
T ss_pred             EEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCC
Confidence            468899987764211 111122256899999 9999984               22499999987763  34441  1  


Q ss_pred             -CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccc-eEEcccCCCCCcceEEccCCCEEEEEEeeCC-c
Q 004971          458 -NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA-VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG-Y  534 (721)
Q Consensus       458 -~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g-~  534 (721)
                       ....+.|||||++|++.+...    .+....||.++.++.  ... .+.|.........+ ++|||++|++.++.+. .
T Consensus       268 ~~~~~~~~SpDG~~l~~~~~~~----~~~~~~l~~~d~~~~--~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~  340 (741)
T 1yr2_A          268 KRGHGASVSSDGRWVVITSSEG----TDPVNTVHVARVTNG--KIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPL  340 (741)
T ss_dssp             TCEEEEEECTTSCEEEEEEECT----TCSCCEEEEEEEETT--EECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTT
T ss_pred             eEEEEEEECCCCCEEEEEEEcc----CCCcceEEEEECCCC--CCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCC
Confidence             356899999999999987421    113445665555431  013 56666554344444 5699999999988654 6


Q ss_pred             eeEEEEECCCCcccceEECcCCC-cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCe
Q 004971          535 KNLYIMDAEGGEGYGLHRLTEGP-WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHP  613 (721)
Q Consensus       535 ~~l~~~d~~~g~~~~~~~l~~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~  613 (721)
                      .+|+++|++++. .....+..+. ..+..++|+  +..|++.....    +...|++++++++..+.+... ..+.+..+
T Consensus       341 ~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~d----g~~~l~~~~~~g~~~~~l~~~-~~~~v~~~  412 (741)
T 1yr2_A          341 KKIVRVDLSGST-PRFDTVVPESKDNLESVGIA--GNRLFASYIHD----AKSQVLAFDLDGKPAGAVSLP-GIGSASGL  412 (741)
T ss_dssp             CEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE--BTEEEEEEEET----TEEEEEEEETTSCEEEECBCS-SSCEEEEE
T ss_pred             CEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE--CCEEEEEEEEC----CEEEEEEEeCCCCceeeccCC-CCeEEEEe
Confidence            689999998742 1144554332 223445565  56777777653    667899999877655555431 24556778


Q ss_pred             EECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       614 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      .++|||+.|++.......             ++.||.||+++++.+.+..
T Consensus       413 ~~s~d~~~l~~~~ss~~~-------------P~~i~~~d~~tg~~~~l~~  449 (741)
T 1yr2_A          413 SGRPGDRHAYLSFSSFTQ-------------PATVLALDPATAKTTPWEP  449 (741)
T ss_dssp             ECCBTCSCEEEEEEETTE-------------EEEEEEEETTTTEEEECSC
T ss_pred             ecCCCCCEEEEEEcCCCC-------------CCEEEEEECCCCcEEEEec
Confidence            899999988877654433             3579999999988777765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.76  E-value=3.6e-16  Score=163.49  Aligned_cols=264  Identities=9%  Similarity=0.053  Sum_probs=179.3

Q ss_pred             cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc-ceecccCCCCceeCcCCCEEEEEe--CCcEEEEECC
Q 004971          371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGDRIAFVE--FPGVYVVNSD  447 (721)
Q Consensus       371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~SpDG~~la~~~--~~~l~v~d~~  447 (721)
                      ....++|+|||++|++....+....  ....+++++..++... ..........++|+|||+++++..  .+.|++||+.
T Consensus        42 ~~~~~~~s~dg~~l~~~~~~~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           42 GAYEMAYSQQENALWLATSQSRKLD--KGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SEEEEEEETTTTEEEEEECCCTTTE--ESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CccceEECCCCCEEEEEcCCCcCCC--CCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            3456899999999988765432100  0146788877655321 111223356689999999888874  5789999999


Q ss_pred             CCceEE-Eeec--C---------ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcc
Q 004971          448 GSNRRQ-VYFK--N---------AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAF  515 (721)
Q Consensus       448 ~g~~~~-l~~~--~---------~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  515 (721)
                      +++... +..+  .         +..+.|+|||+++++...+     .++  .|+.++..+.   .....+.........
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~--~i~~~d~~~~---~~~~~~~~~~~~~~~  189 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG-----KES--VIWVVDGGNI---KLKTAIQNTGKMSTG  189 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES-----SSC--EEEEEETTTT---EEEEEECCCCTTCCC
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC-----CCc--eEEEEcCCCC---ceEEEecCCCCccce
Confidence            888643 3321  1         4678999999999887631     123  4555555543   133344424445778


Q ss_pred             eEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC----CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEE
Q 004971          516 PSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE----GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI  591 (721)
Q Consensus       516 ~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~----~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~  591 (721)
                      ++|+|||++|++...   +..|++||+.+++.  ...+..    .......++|+|||++|++.....      ..|++|
T Consensus       190 ~~~s~dg~~l~~~~~---~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------~~v~~~  258 (353)
T 3vgz_A          190 LALDSEGKRLYTTNA---DGELITIDTADNKI--LSRKKLLDDGKEHFFINISLDTARQRAFITDSKA------AEVLVV  258 (353)
T ss_dssp             CEEETTTTEEEEECT---TSEEEEEETTTTEE--EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS------SEEEEE
T ss_pred             EEECCCCCEEEEEcC---CCeEEEEECCCCeE--EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC------CEEEEE
Confidence            999999999988865   67899999998875  333332    122345689999999998877542      389999


Q ss_pred             ecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCc
Q 004971          592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTP  671 (721)
Q Consensus       592 d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~  671 (721)
                      |+.+++.......   +....++|+|||++|++.....+                .|++||+++++.............+
T Consensus       259 d~~~~~~~~~~~~---~~~~~~~~s~dg~~l~v~~~~~~----------------~v~~~d~~~~~~~~~~~~~~~~~~~  319 (353)
T 3vgz_A          259 DTRNGNILAKVAA---PESLAVLFNPARNEAYVTHRQAG----------------KVSVIDAKSYKVVKTFDTPTHPNSL  319 (353)
T ss_dssp             ETTTCCEEEEEEC---SSCCCEEEETTTTEEEEEETTTT----------------EEEEEETTTTEEEEEEECCSEEEEE
T ss_pred             ECCCCcEEEEEEc---CCCceEEECCCCCEEEEEECCCC----------------eEEEEECCCCeEEEEEecCCCCCeE
Confidence            9999887665543   22367999999999887765443                4999999888766544444455678


Q ss_pred             eecCC
Q 004971          672 AWGPR  676 (721)
Q Consensus       672 ~~sp~  676 (721)
                      +|+|+
T Consensus       320 ~~s~d  324 (353)
T 3vgz_A          320 ALSAD  324 (353)
T ss_dssp             EECTT
T ss_pred             EEcCC
Confidence            88886

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.76  E-value=4.8e-18  Score=179.77  Aligned_cols=241  Identities=14%  Similarity=0.152  Sum_probs=165.5

Q ss_pred             CcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971          320 LHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN  399 (721)
Q Consensus       320 ~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~  399 (721)
                      ..+..++|+| ||++|+..     ..+..|++||+.++....+.....+...+..++|+|+|+.|+..+.++.       
T Consensus        12 ~~v~~~~~s~-~g~~l~~~-----~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~-------   78 (377)
T 3dwl_C           12 KPSYEHAFNS-QRTEFVTT-----TATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRN-------   78 (377)
T ss_dssp             SCCSCCEECS-SSSEEECC-----CSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSS-------
T ss_pred             CcEEEEEECC-CCCEEEEe-----cCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCe-------
Confidence            3568899999 99988873     3456699999998854466666667788889999999999998776554       


Q ss_pred             ceeEEEeccCCC---Ccc--eecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCc----eEEEe---ecCceeeEEcC
Q 004971          400 NQLLLENIKSPL---PDI--SLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSN----RRQVY---FKNAFSTVWDP  466 (721)
Q Consensus       400 ~~l~~~~~~~~~---~~~--~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~----~~~l~---~~~~~~~~~sp  466 (721)
                        +.++++..+.   ...  .........++|+|||+.|+..+ ++.|.+||+.+++    ...+.   ...+..++|+|
T Consensus        79 --v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~  156 (377)
T 3dwl_C           79 --AYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP  156 (377)
T ss_dssp             --EEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred             --EEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence              5555554432   111  11222344579999999998885 7889999998876    34443   45678999999


Q ss_pred             CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC-------------ccceEEcccCCCCCcceEEccCCCEEEEEEeeCC
Q 004971          467 VREAVVYTSGGPEFASESSEVDIISINVDDVDG-------------VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG  533 (721)
Q Consensus       467 dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g  533 (721)
                      +++.|+..+       .++.+.+|++.......             ......+ .+...+..++|+|||++|++.+.   
T Consensus       157 ~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~---  225 (377)
T 3dwl_C          157 NNVLLAAGC-------ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGH---  225 (377)
T ss_dssp             TSSEEEEEE-------SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEET---
T ss_pred             CCCEEEEEe-------CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeC---
Confidence            999999887       56889999986322100             0122233 45566788999999999999886   


Q ss_pred             ceeEEEEECCCCccc--ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971          534 YKNLYIMDAEGGEGY--GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN  594 (721)
Q Consensus       534 ~~~l~~~d~~~g~~~--~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~  594 (721)
                      +..|++||+.+++..  .+..+..+...+..++|+|||+.|+.+..+        .+.+|+..
T Consensus       226 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~--------~~~~~~~~  280 (377)
T 3dwl_C          226 DSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNY--------SPILLQGN  280 (377)
T ss_dssp             TTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSS--------SEEEECCC
T ss_pred             CCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCC--------cEEEEEeC
Confidence            778999999987631  023344555667899999999988777654        45577665

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.75  E-value=8.1e-17  Score=172.06  Aligned_cols=290  Identities=11%  Similarity=0.049  Sum_probs=193.2

Q ss_pred             ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce--EEeecccCCCCcccCcEEcC-CCCEEEEEEeeCCCCCCCC
Q 004971          322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF--IELTRFVSPKTHHLNPFISP-DSSRVGYHKCRGGSTREDG  398 (721)
Q Consensus       322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~--~~l~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~~~~~  398 (721)
                      ...++++| +  .+++...  +..++.|.+|++.....  ..+.....|...+..++|+| +++.|+....++.      
T Consensus        37 ~~~~~~~~-~--~~~~~~~--~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~------  105 (402)
T 2aq5_A           37 SGFCAVNP-K--FMALICE--ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCT------  105 (402)
T ss_dssp             SCSEEECS-S--EEEEEBC--CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSE------
T ss_pred             CCcEEECC-C--eEEEEEE--EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCe------
Confidence            34566766 4  4444222  23456699999965431  12233445677888999999 8888888765544      


Q ss_pred             cceeEEEeccCCC------Cccee---cccCCCCceeCcCC-CEEEEEe-CCcEEEEECCCCceE-EE--e--ecCceee
Q 004971          399 NNQLLLENIKSPL------PDISL---FRFDGSFPSFSPKG-DRIAFVE-FPGVYVVNSDGSNRR-QV--Y--FKNAFST  462 (721)
Q Consensus       399 ~~~l~~~~~~~~~------~~~~~---~~~~~~~~~~SpDG-~~la~~~-~~~l~v~d~~~g~~~-~l--~--~~~~~~~  462 (721)
                         +.++++....      ..+..   .......++|+|+| +.|+..+ ++.|.+||+.+++.. .+  .  ...+..+
T Consensus       106 ---v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~  182 (402)
T 2aq5_A          106 ---VMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV  182 (402)
T ss_dssp             ---EEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEE
T ss_pred             ---EEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEE
Confidence               5566655431      11111   22334457999998 4666664 788999999988754 44  2  4567899


Q ss_pred             EEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc-ccCCC-CCcceEEccCCCEEEEEEeeCCceeEEEE
Q 004971          463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL-TTNGK-NNAFPSVSPDGKWIVFRSTRTGYKNLYIM  540 (721)
Q Consensus       463 ~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l-~~~~~-~~~~~~~SpDg~~l~~~s~~~g~~~l~~~  540 (721)
                      .|+|||+.|+..+       .++.+.||++....     ....+ ..+.. ....+.|+|||+.|++......+..|++|
T Consensus       183 ~~~~~~~~l~~~~-------~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iw  250 (402)
T 2aq5_A          183 DWSRDGALICTSC-------RDKRVRVIEPRKGT-----VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW  250 (402)
T ss_dssp             EECTTSSCEEEEE-------TTSEEEEEETTTTE-----EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEE
T ss_pred             EECCCCCEEEEEe-------cCCcEEEEeCCCCc-----eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEE
Confidence            9999999999987       56888888875432     34444 34443 36789999999988887433347899999


Q ss_pred             ECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc--eEEeeecCCCCCcCCeEECCC
Q 004971          541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG--LRKLIQSGSAGRANHPYFSPD  618 (721)
Q Consensus       541 d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~~~SpD  618 (721)
                      |+.+++.........+...+..++|+|||+.|+++....      ..|++||+.+++  ...+....+...+..++|+||
T Consensus       251 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d------g~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~  324 (402)
T 2aq5_A          251 DTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD------SSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPK  324 (402)
T ss_dssp             ETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC------SCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCG
T ss_pred             cCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC------CeEEEEEecCCCcceEeecccccCCcccceEEecc
Confidence            998765311112223344568899999999998777432      279999998887  444443224577889999999


Q ss_pred             CCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEec
Q 004971          619 GKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT  662 (721)
Q Consensus       619 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt  662 (721)
                      |++++.  .+.                 .+.+|++.+++...+.
T Consensus       325 ~~~~~s--~~~-----------------~~~~~~l~~~~~~~i~  349 (402)
T 2aq5_A          325 RGLEVN--KCE-----------------IARFYKLHERKCEPIA  349 (402)
T ss_dssp             GGSCGG--GTE-----------------EEEEEEEETTEEEEEE
T ss_pred             ccccee--cce-----------------eEEEEEcCCCcEEEEE
Confidence            998753  111                 3777888777665543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.75  E-value=6.8e-17  Score=169.64  Aligned_cols=288  Identities=12%  Similarity=0.065  Sum_probs=193.0

Q ss_pred             CCCCcccCceeecCC---CCEEEEEEecCCCCeeeEEEEECCCCceE-Eeeccc--CCCCcccCcEEcCC----CCEEEE
Q 004971          317 PPGLHAFTPATSPGN---NKFIAVATRRPTSSYRHIELFDLVKNKFI-ELTRFV--SPKTHHLNPFISPD----SSRVGY  386 (721)
Q Consensus       317 ~~~~~~~~~~~sp~d---G~~la~~~~~~g~~~~~l~l~dl~tg~~~-~l~~~~--~~~~~~~~~~~Spd----g~~l~~  386 (721)
                      .+...+..++|+| +   ++.++++....+    .|.+||+.+++.. .+....  .+...+..++|+|+    |+.|+.
T Consensus        16 ~h~~~v~~i~~~p-~~~~~~~~~~~~~~~~----~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~   90 (366)
T 3k26_A           16 DHNQPLFGVQFNW-HSKEGDPLVFATVGSN----RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV   90 (366)
T ss_dssp             TTCSCEEEEEECT-TCCTTSCEEEEEEETT----EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred             CCCCceEEEEEec-ccCCCCceEEEECCCC----EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence            4566778899998 6   654555443322    4999999977643 232221  13456788999999    556776


Q ss_pred             EEeeCCCCCCCCcceeEEEeccCCCCc--ceecccCCCCceeCc-CCCEEEEEe-CCcEEEEECCCCceEEEe------e
Q 004971          387 HKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSP-KGDRIAFVE-FPGVYVVNSDGSNRRQVY------F  456 (721)
Q Consensus       387 ~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~Sp-DG~~la~~~-~~~l~v~d~~~g~~~~l~------~  456 (721)
                      ...++         .+.++++......  +.........+.|+| +++.|+..+ ++.|.+||+.+++.....      .
T Consensus        91 ~~~dg---------~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  161 (366)
T 3k26_A           91 AGSRG---------IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR  161 (366)
T ss_dssp             EETTC---------EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS
T ss_pred             ecCCC---------EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc
Confidence            55443         3666666544221  111223345579999 899888885 789999999988754432      4


Q ss_pred             cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC-----------------------ccceEEcccCCCCC
Q 004971          457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG-----------------------VSAVRRLTTNGKNN  513 (721)
Q Consensus       457 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------------------~~~~~~l~~~~~~~  513 (721)
                      ..+..+.|+|+++.|+..+       .++.+.+|++.......                       .........+...+
T Consensus       162 ~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  234 (366)
T 3k26_A          162 DEVLSADYDLLGEKIMSCG-------MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV  234 (366)
T ss_dssp             SCEEEEEECTTSSEEEEEE-------TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred             CceeEEEECCCCCEEEEec-------CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence            5678999999999999886       56889999876432000                       00011111245567


Q ss_pred             cceEEccCCCEEEEEEeeCCceeEEEEECCCCcc------------cceEECcCCCcCceeeEEccC--CCEEEEEEccC
Q 004971          514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG------------YGLHRLTEGPWSDTMCNWSPD--GEWIAFASDRD  579 (721)
Q Consensus       514 ~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~------------~~~~~l~~~~~~~~~~~~SpD--G~~l~~~~~~~  579 (721)
                      ..++|+  +++|+..+.   +..|++||+.+++.            ..+..+..+...+..++|+||  |+.|+.+..++
T Consensus       235 ~~~~~~--~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg  309 (366)
T 3k26_A          235 DCVRWL--GDLILSKSC---ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG  309 (366)
T ss_dssp             CEEEEE--TTEEEEECS---SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTS
T ss_pred             EEEEEc--CCEEEEEec---CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCC
Confidence            778888  778887776   77899999887643            113334444555778999999  99999888775


Q ss_pred             CCCCCceeEEEEecCCCceE---EeeecCC--CCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971          580 NPGSGSFEMYLIHPNGTGLR---KLIQSGS--AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD  654 (721)
Q Consensus       580 ~~~~~~~~i~~~d~~~~~~~---~l~~~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  654 (721)
                             .|++||+.+++..   ......+  ...+..++|+|||++|+..+.++                 .|++||+.
T Consensus       310 -------~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-----------------~i~iwd~~  365 (366)
T 3k26_A          310 -------KLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA-----------------SIWRWDRL  365 (366)
T ss_dssp             -------CEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS-----------------EEEEEEC-
T ss_pred             -------cEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCC-----------------EEEEEEec
Confidence                   8999999887532   1111123  56788999999999999877665                 49999975

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.75  E-value=7.9e-16  Score=176.15  Aligned_cols=303  Identities=10%  Similarity=0.051  Sum_probs=204.5

Q ss_pred             eecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc----cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCccee
Q 004971          327 TSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF----VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQL  402 (721)
Q Consensus       327 ~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~----~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l  402 (721)
                      .++ +|.+++|..+..+.....++......+. ..+...    .++...+..++|||||++|+|.....+...    ..|
T Consensus        84 p~~-~g~~~y~~~~~~~~~~~~~~r~~~~~~~-~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~----~~i  157 (693)
T 3iuj_A           84 PFR-EGRYHYFFKNDGLQNQNVLWRQQEGKPA-EVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDW----REI  157 (693)
T ss_dssp             CEE-ETTEEEEEEECSSCSSCEEEEECTTSCC-EEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCE----EEE
T ss_pred             CEE-ECCEEEEEEEcCCCceeEEEEeCCCCCc-EEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCce----EEE
Confidence            356 8888888766655544455554443333 333221    112234567899999999999887655321    568


Q ss_pred             EEEeccCCCCc-ceecccCCCCceeCcCCCEEEEEeC--------------CcEEEEECCCCce--EEEe--ec----Cc
Q 004971          403 LLENIKSPLPD-ISLFRFDGSFPSFSPKGDRIAFVEF--------------PGVYVVNSDGSNR--RQVY--FK----NA  459 (721)
Q Consensus       403 ~~~~~~~~~~~-~~~~~~~~~~~~~SpDG~~la~~~~--------------~~l~v~d~~~g~~--~~l~--~~----~~  459 (721)
                      ++.++.++... ..........++|| ||+.|+|...              ..|+++++.++..  +.+.  ..    ..
T Consensus       158 ~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~  236 (693)
T 3iuj_A          158 HLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRY  236 (693)
T ss_dssp             EEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSE
T ss_pred             EEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEE
Confidence            89998877421 11112223568999 9999999842              2499999987653  4555  22    23


Q ss_pred             eeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCC-ceeEE
Q 004971          460 FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG-YKNLY  538 (721)
Q Consensus       460 ~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g-~~~l~  538 (721)
                      ..+.|||||++|++....     ......||.++.++.  ....+.+.........+ |+++|++|++.+++++ ..+|+
T Consensus       237 ~~~~~SpDg~~l~~~~~~-----~~~~~~i~~~d~~~~--~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~  308 (693)
T 3iuj_A          237 VGATVTEDDRFLLISAAN-----STSGNRLYVKDLSQE--NAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLV  308 (693)
T ss_dssp             EEEEECTTSCEEEEEEES-----SSSCCEEEEEETTST--TCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEE
T ss_pred             EEEEEcCCCCEEEEEEcc-----CCCCcEEEEEECCCC--CCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEE
Confidence            578999999999988631     122346777776542  11456666655444444 8999999999988654 56899


Q ss_pred             EEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCC
Q 004971          539 IMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPD  618 (721)
Q Consensus       539 ~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpD  618 (721)
                      ++|++++.....+.+..+.....  .|+|+|++|++...+.    +...|++++++++..+.+... ..+.+..+.+++|
T Consensus       309 ~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~----g~~~l~~~d~~g~~~~~l~~p-~~~~~~~~~~~~d  381 (693)
T 3iuj_A          309 TVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVD----ATARVEQFDYEGKRVREVALP-GLGSVSGFNGKHD  381 (693)
T ss_dssp             EEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEET----TEEEEEEECTTSCEEEEECCS-SSSEEEECCCCTT
T ss_pred             EEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEEC----CeeEEEEEECCCCeeEEeecC-CCceEEeeecCCC
Confidence            99999876433355655544333  9999999999998874    677899999998776666432 3344566778999


Q ss_pred             CCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccC
Q 004971          619 GKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN  664 (721)
Q Consensus       619 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~  664 (721)
                      ++.|++.......             ++.||.+|+++++.+.|+..
T Consensus       382 ~~~l~~~~ss~~t-------------P~~l~~~d~~~g~~~~l~~~  414 (693)
T 3iuj_A          382 DPALYFGFENYAQ-------------PPTLYRFEPKSGAISLYRAS  414 (693)
T ss_dssp             CSCEEEEEECSSS-------------CCEEEEECTTTCCEEEEECC
T ss_pred             CCEEEEEecCCCC-------------CCEEEEEECCCCeEEEEEeC
Confidence            9999887665332             35799999999988888763

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.75  E-value=5.2e-17  Score=175.53  Aligned_cols=285  Identities=13%  Similarity=0.081  Sum_probs=183.5

Q ss_pred             cceeccC-CeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeE
Q 004971          271 WPCWVDE-STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHI  349 (721)
Q Consensus       271 ~~~ws~d-g~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l  349 (721)
                      ..+|+|. +.++++  ...+|.+.||++......       ....+..+...+..++|+|.++++|+..     +.+..|
T Consensus       124 ~l~~~P~~~~~las--Gs~dg~i~lWd~~~~~~~-------~~~~~~gH~~~V~~l~f~p~~~~~l~s~-----s~D~~v  189 (435)
T 4e54_B          124 SLAWHPTHPSTVAV--GSKGGDIMLWNFGIKDKP-------TFIKGIGAGGSITGLKFNPLNTNQFYAS-----SMEGTT  189 (435)
T ss_dssp             EEEECSSCTTCEEE--EETTSCEEEECSSCCSCC-------EEECCCSSSCCCCEEEECSSCTTEEEEE-----CSSSCE
T ss_pred             EEEEeCCCCCEEEE--EeCCCEEEEEECCCCCce-------eEEEccCCCCCEEEEEEeCCCCCEEEEE-----eCCCEE
Confidence            3479984 556553  334799999965433321       2223345666788999998356777663     245669


Q ss_pred             EEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC-CcceecccCCCCceeCc
Q 004971          350 ELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL-PDISLFRFDGSFPSFSP  428 (721)
Q Consensus       350 ~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~Sp  428 (721)
                      .+||++++....+.........+..++|+|+++.|+....++.         +.++++.+.. ..+.........++|+|
T Consensus       190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~---------i~~wd~~~~~~~~~~~h~~~v~~v~~~p  260 (435)
T 4e54_B          190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGN---------VILLNMDGKELWNLRMHKKKVTHVALNP  260 (435)
T ss_dssp             EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSB---------EEEEESSSCBCCCSBCCSSCEEEEEECT
T ss_pred             EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCc---------EeeeccCcceeEEEecccceEEeeeecC
Confidence            9999988765555443333445677899999999987654443         6666765431 22222233345679999


Q ss_pred             CCCEEEE-Ee-CCcEEEEECCCCceE-EEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc
Q 004971          429 KGDRIAF-VE-FPGVYVVNSDGSNRR-QVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV  500 (721)
Q Consensus       429 DG~~la~-~~-~~~l~v~d~~~g~~~-~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~  500 (721)
                      +++.+++ .+ ++.|.+||+...+.. .+.     ...+..++|+|||++|+..+       .++.+.||++....    
T Consensus       261 ~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-------~D~~i~iwd~~~~~----  329 (435)
T 4e54_B          261 CCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-------QKSEIRVYSASQWD----  329 (435)
T ss_dssp             TCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-------SSSCEEEEESSSSS----
T ss_pred             CCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-------CCCEEEEEECCCCc----
Confidence            9975544 43 788999999765532 111     34678899999999999886       57899999876543    


Q ss_pred             cceEEcccCC------CCCcceEEccCCCEEEEEEeeCC---------ceeEEEEECCCCcccceEECc-CCCcCceee-
Q 004971          501 SAVRRLTTNG------KNNAFPSVSPDGKWIVFRSTRTG---------YKNLYIMDAEGGEGYGLHRLT-EGPWSDTMC-  563 (721)
Q Consensus       501 ~~~~~l~~~~------~~~~~~~~SpDg~~l~~~s~~~g---------~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~-  563 (721)
                       ....+..+.      .......|+|++..+++....++         ...|++||..+|+.  +..+. .+...+..+ 
T Consensus       330 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~--~~~l~~~~~~~v~s~~  406 (435)
T 4e54_B          330 -CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM--MCQLYDPESSGISSLN  406 (435)
T ss_dssp             -SEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE--EEEECCSSCCCCCCEE
T ss_pred             -cceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE--EEEEeCCCCCcEEEEE
Confidence             333333322      12345689999998887754321         34699999999885  44544 333344554 


Q ss_pred             EEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE
Q 004971          564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK  600 (721)
Q Consensus       564 ~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~  600 (721)
                      +|||||+.|+.+. +.       .|++|++..++.++
T Consensus       407 ~fspdg~~lasg~-d~-------~i~iW~~~~gk~rK  435 (435)
T 4e54_B          407 EFNPMGDTLASAM-GY-------HILIWSQQEARTRK  435 (435)
T ss_dssp             EECTTSSCEEEEC-SS-------EEEECCCC------
T ss_pred             EECCCCCEEEEEc-CC-------cEEEEECCcCeeeC
Confidence            7999999888765 32       79999999887653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.75  E-value=1.1e-15  Score=175.35  Aligned_cols=304  Identities=9%  Similarity=0.038  Sum_probs=198.1

Q ss_pred             eeccCCe-EEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCC-------CCcccCceeecCCCCEEEEEEecCCC
Q 004971          273 CWVDEST-LFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPP-------GLHAFTPATSPGNNKFIAVATRRPTS  344 (721)
Q Consensus       273 ~ws~dg~-l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~sp~dG~~la~~~~~~g~  344 (721)
                      ..++||+ ++|.+.........||+....++        ..++++..       ...+..++||| ||++|+|.....|+
T Consensus        74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~l~d~~~~a~~~~~~~~~~~~SP-DG~~la~~~~~~G~  144 (695)
T 2bkl_A           74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESG--------QEKVLLDPNGWSKDGTVSLGTWAVSW-DGKKVAFAQKPNAA  144 (695)
T ss_dssp             CCEEETTEEEEEEECTTCSSCEEEEEESTTS--------CCEEEECGGGSSSSSCEEEEEEEECT-TSSEEEEEEEETTC
T ss_pred             CCEEECCEEEEEEEcCCCeEEEEEEEcCCCC--------CcEEEEchHHhccCCCEEEEEEEECC-CCCEEEEEECCCCC
Confidence            3446765 66654433233567886654432        44555442       22467889999 99999999888888


Q ss_pred             CeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC----CCCCcceeEEEeccCCCCc--ceecc
Q 004971          345 SYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST----REDGNNQLLLENIKSPLPD--ISLFR  418 (721)
Q Consensus       345 ~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~--~~~~~  418 (721)
                      +...|++||+++++.......  .......++|||||+.|+|.+.+....    ......+++++++.++...  +....
T Consensus       145 ~~~~i~v~dl~tg~~~~~~~~--~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~  222 (695)
T 2bkl_A          145 DEAVLHVIDVDSGEWSKVDVI--EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER  222 (695)
T ss_dssp             SCCEEEEEETTTCCBCSSCCB--SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC
T ss_pred             ceEEEEEEECCCCCCcCCccc--CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec
Confidence            788999999999974311111  122236799999999999988754310    0011256888888766421  21111


Q ss_pred             ----cCCCCceeCcCCCEEEEEe-CC----cEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcE
Q 004971          419 ----FDGSFPSFSPKGDRIAFVE-FP----GVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEV  487 (721)
Q Consensus       419 ----~~~~~~~~SpDG~~la~~~-~~----~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  487 (721)
                          .....+.|||||++|++.. ..    .|++++..+++.+.+.  ......+.| ++|+ +++.++.     .....
T Consensus       223 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~-----~~~~~  295 (695)
T 2bkl_A          223 TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDE-----GAPRQ  295 (695)
T ss_dssp             CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECT-----TCTTC
T ss_pred             CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECC-----CCCCC
Confidence                1123578999999999883 33    7999988777877777  234455666 7888 8777641     23456


Q ss_pred             EEEEEEccCCCCccceEEcccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC-CcCceeeE
Q 004971          488 DIISINVDDVDGVSAVRRLTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-PWSDTMCN  564 (721)
Q Consensus       488 ~i~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~-~~~~~~~~  564 (721)
                      .|+.++.++.. ....+.+..+.  .....++|+  +.+|++....++..+|+++++.++.   ...+... ...+..++
T Consensus       296 ~l~~~d~~~~~-~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~---~~~l~~~~~~~v~~~~  369 (695)
T 2bkl_A          296 RVFEVDPAKPA-RASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKP---VRTVQLPGVGAASNLM  369 (695)
T ss_dssp             EEEEEBTTBCS-GGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCE---EEECCCSSSSEECCCB
T ss_pred             EEEEEeCCCCC-ccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCe---eEEecCCCCeEEEEee
Confidence            77777775530 01124554432  234556776  5677777777778899999987554   5556533 44456788


Q ss_pred             EccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971          565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ  603 (721)
Q Consensus       565 ~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  603 (721)
                      ++||++.|++.....   .....||+||+.+++.+.+..
T Consensus       370 ~s~d~~~l~~~~ss~---~~P~~v~~~d~~~g~~~~l~~  405 (695)
T 2bkl_A          370 GLEDLDDAYYVFTSF---TTPRQIYKTSVSTGKSELWAK  405 (695)
T ss_dssp             SCTTCSEEEEEEEET---TEEEEEEEEETTTCCEEEEEE
T ss_pred             cCCCCCEEEEEEcCC---CCCCEEEEEECCCCcEEEEec
Confidence            999999999877653   345689999999988766654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.75  E-value=1e-15  Score=160.96  Aligned_cols=279  Identities=10%  Similarity=0.053  Sum_probs=165.3

Q ss_pred             CCcEEEEEEecCCCcceeccccceEEeCC-CCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEEC--CCCceEEeecc
Q 004971          289 DDWISVYKVILPQTGLVSTESVSIQRVTP-PGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDL--VKNKFIELTRF  365 (721)
Q Consensus       289 ~g~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl--~tg~~~~l~~~  365 (721)
                      ++.+.+|.++...+        +...+.. .......++||| ||++|++..... .....|.+|++  ++++.+.+...
T Consensus        26 ~~~i~~~~~d~~~g--------~~~~~~~~~~~~p~~l~~sp-dg~~l~~~~~~~-~~~~~v~~~~~~~~~g~~~~~~~~   95 (361)
T 3scy_A           26 SKGIYTFRFNEETG--------ESLPLSDAEVANPSYLIPSA-DGKFVYSVNEFS-KDQAAVSAFAFDKEKGTLHLLNTQ   95 (361)
T ss_dssp             CCEEEEEEEETTTC--------CEEEEEEEECSCCCSEEECT-TSSEEEEEECCS-STTCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCEEEEEEeCCCC--------CEEEeecccCCCCceEEECC-CCCEEEEEEccC-CCCCcEEEEEEeCCCCcEEEeeEe
Confidence            45566775544332        2222211 333456789999 999888865431 12234666655  44666565543


Q ss_pred             cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC--CCccee---ccc-----------CCCCceeCcC
Q 004971          366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP--LPDISL---FRF-----------DGSFPSFSPK  429 (721)
Q Consensus       366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~---~~~-----------~~~~~~~SpD  429 (721)
                      .........+++  ||++|++.....        ..+.++++...  ...+..   ...           ....++|+||
T Consensus        96 ~~~~~~p~~~~~--dg~~l~~~~~~~--------~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd  165 (361)
T 3scy_A           96 KTMGADPCYLTT--NGKNIVTANYSG--------GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD  165 (361)
T ss_dssp             ECSSSCEEEEEE--CSSEEEEEETTT--------TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT
T ss_pred             ccCCCCcEEEEE--CCCEEEEEECCC--------CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC
Confidence            323334444555  899888765433        24555555422  111110   000           0123799999


Q ss_pred             CCEEEEEe--CCcEEEEECCCCc-------eE------EEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEE
Q 004971          430 GDRIAFVE--FPGVYVVNSDGSN-------RR------QVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS  491 (721)
Q Consensus       430 G~~la~~~--~~~l~v~d~~~g~-------~~------~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~  491 (721)
                      |++|++..  ...+++|+++...       ..      .+.   ...+..++|+|||++|++...      .++.+.+|+
T Consensus       166 g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~------~~~~v~v~~  239 (361)
T 3scy_A          166 GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE------IGGTVIAFR  239 (361)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET------TTCEEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC------CCCeEEEEE
Confidence            99988874  5678899876432       21      122   234668999999999998863      467888888


Q ss_pred             EEccCCCCccceEEcccCC---CCCcceEEccCCCEEEEEEeeCCceeEEEEEC--CCCcccceEECcCCCcCceeeEEc
Q 004971          492 INVDDVDGVSAVRRLTTNG---KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA--EGGEGYGLHRLTEGPWSDTMCNWS  566 (721)
Q Consensus       492 ~~~~~~~~~~~~~~l~~~~---~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~--~~g~~~~~~~l~~~~~~~~~~~~S  566 (721)
                      ++...   ......+....   .....++|||||++|++.... +...|.+|++  .+++...+..+.. ......++||
T Consensus       240 ~~~g~---~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~-~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~s  314 (361)
T 3scy_A          240 YADGM---LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL-KADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIIT  314 (361)
T ss_dssp             EETTE---EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS-SSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEEC
T ss_pred             ecCCc---eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC-CCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEEC
Confidence            87321   01122222211   234578999999998876653 1245666665  4666433444433 3345689999


Q ss_pred             cCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971          567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI  602 (721)
Q Consensus       567 pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  602 (721)
                      |||++|+++....    +...+|.+|..+++.+.+.
T Consensus       315 pdg~~l~~~~~~~----~~v~v~~~d~~~g~~~~~~  346 (361)
T 3scy_A          315 PNGKYLLVACRDT----NVIQIFERDQATGLLTDIK  346 (361)
T ss_dssp             TTSCEEEEEETTT----TEEEEEEECTTTCCEEECS
T ss_pred             CCCCEEEEEECCC----CCEEEEEEECCCCcEeecc
Confidence            9999999888653    4456666888888876654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.74  E-value=4.9e-16  Score=168.65  Aligned_cols=247  Identities=11%  Similarity=0.070  Sum_probs=163.0

Q ss_pred             cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEecc--CCCCc--ce--ecccCCCCceeCcCCCEEEEEe-CCcEEE
Q 004971          371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK--SPLPD--IS--LFRFDGSFPSFSPKGDRIAFVE-FPGVYV  443 (721)
Q Consensus       371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~--~~--~~~~~~~~~~~SpDG~~la~~~-~~~l~v  443 (721)
                      .+..++|+|||+.|+++....+        .+.++++.  .+...  +.  ........++|+|||++|++.+ ++.+++
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg--------~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~  175 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDK--------SLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYS  175 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGT--------EEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ceEEEEEcCCCCEEEEEECCCC--------eEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence            4677899999999855443332        35555555  33211  11  1122344689999999999885 678999


Q ss_pred             EECCCCceE-----EEe--ecCceeeEEcCC---CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE-cccCCCC
Q 004971          444 VNSDGSNRR-----QVY--FKNAFSTVWDPV---REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR-LTTNGKN  512 (721)
Q Consensus       444 ~d~~~g~~~-----~l~--~~~~~~~~~spd---g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-l~~~~~~  512 (721)
                      |++.++...     .+.  ...+..+.|+||   +++|+.++       .++.+.||++....     .... +..+...
T Consensus       176 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~-------~d~~i~vwd~~~~~-----~~~~~~~~h~~~  243 (450)
T 2vdu_B          176 IDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD-------RDEHIKISHYPQCF-----IVDKWLFGHKHF  243 (450)
T ss_dssp             EETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE-------TTSCEEEEEESCTT-----CEEEECCCCSSC
T ss_pred             EecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEc-------CCCcEEEEECCCCc-----eeeeeecCCCCc
Confidence            999876643     222  456789999999   88888876       56899999986543     3444 4456677


Q ss_pred             CcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-------------------------CCCcCceeeEEcc
Q 004971          513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-------------------------EGPWSDTMCNWSP  567 (721)
Q Consensus       513 ~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-------------------------~~~~~~~~~~~Sp  567 (721)
                      +..++|+ ||++|+..+.   +..|++||+.+++.  +..+.                         .....+..++|+|
T Consensus       244 v~~~~~s-d~~~l~s~~~---d~~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  317 (450)
T 2vdu_B          244 VSSICCG-KDYLLLSAGG---DDKIFAWDWKTGKN--LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK  317 (450)
T ss_dssp             EEEEEEC-STTEEEEEES---SSEEEEEETTTCCE--EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred             eEEEEEC-CCCEEEEEeC---CCeEEEEECCCCcE--eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence            8889999 9999998886   78999999998875  33332                         1123457889999


Q ss_pred             CCCEEEEEE-ccCCCCCCceeEEEEec--CCC---ceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCC
Q 004971          568 DGEWIAFAS-DRDNPGSGSFEMYLIHP--NGT---GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQ  641 (721)
Q Consensus       568 DG~~l~~~~-~~~~~~~~~~~i~~~d~--~~~---~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~  641 (721)
                      ||+.|+++. .+.       .|++|++  ..+   +......  ....+..++|+|++ .++....... +.       .
T Consensus       318 ~~~~l~~~~~~d~-------~i~iw~~~~~~~~~l~~~~~~~--~~~~v~~~~~~~~~-~~v~~~~~~~-~~-------~  379 (450)
T 2vdu_B          318 NLPFVAFFVEATK-------CIIILEMSEKQKGDLALKQIIT--FPYNVISLSAHNDE-FQVTLDNKES-SG-------V  379 (450)
T ss_dssp             SSSEEEEEETTCS-------EEEEEEECSSSTTCEEEEEEEE--CSSCEEEEEEETTE-EEEEECCTTC-CS-------S
T ss_pred             CCCEEEEEECCCC-------eEEEEEeccCCCCceeeccEec--cCCceEEEEecCCc-EEEEEecccC-CC-------C
Confidence            999999988 443       8999998  444   2222222  23677889999953 3333333211 00       0


Q ss_pred             CCCCccEEEEEcCCCCeEEec
Q 004971          642 YQPYGEIFKIKLDGSDLKRLT  662 (721)
Q Consensus       642 ~~~~~~l~~~d~~~~~~~~lt  662 (721)
                      ....-+||.++.++++.+ ++
T Consensus       380 ~~~~i~v~~~~~~~~~~~-~~  399 (450)
T 2vdu_B          380 QKNFAKFIEYNLNENSFV-VN  399 (450)
T ss_dssp             CCCSEEEEEEETTTTEEE-EC
T ss_pred             CCcceEEEEEEcCCCeEE-Ec
Confidence            000115777777776653 55

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.74  E-value=2.1e-16  Score=165.30  Aligned_cols=285  Identities=10%  Similarity=0.018  Sum_probs=186.3

Q ss_pred             cceeccCCe-EEEEeccC--CCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCC---CCEEEEEEecCCC
Q 004971          271 WPCWVDEST-LFFHRKSE--EDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGN---NKFIAVATRRPTS  344 (721)
Q Consensus       271 ~~~ws~dg~-l~~~~~~~--~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~d---G~~la~~~~~~g~  344 (721)
                      ..+|+|++. ++++ ...  .++.+.+|.+.....        .......+...+..++|+| +   |++|+...     
T Consensus        23 ~~~~~p~~~~l~~~-~s~~~~d~~v~iw~~~~~~~--------~~~~~~~~~~~v~~~~~~~-~~~~~~~l~~~~-----   87 (357)
T 3i2n_A           23 DCKWVPCSAKFVTM-GNFARGTGVIQLYEIQHGDL--------KLLREIEKAKPIKCGTFGA-TSLQQRYLATGD-----   87 (357)
T ss_dssp             EEEECTTSSEEEEE-EC--CCCEEEEEEEECSSSE--------EEEEEEEESSCEEEEECTT-CCTTTCCEEEEE-----
T ss_pred             EEEEcCCCceEEEe-cCccCCCcEEEEEeCCCCcc--------cceeeecccCcEEEEEEcC-CCCCCceEEEec-----
Confidence            448999985 4443 222  378889996643321        1122224455678899999 8   68887754     


Q ss_pred             CeeeEEEEECCCCceEEeecccCCCCcccCc------EEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecc
Q 004971          345 SYRHIELFDLVKNKFIELTRFVSPKTHHLNP------FISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFR  418 (721)
Q Consensus       345 ~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~------~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  418 (721)
                      .+..|.+||+.+++. .+.....+...+..+      +|+|+++.|+....++.         +.++++..+...+....
T Consensus        88 ~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~---------i~vwd~~~~~~~~~~~~  157 (357)
T 3i2n_A           88 FGGNLHIWNLEAPEM-PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT---------VKVWDPRQKDDPVANME  157 (357)
T ss_dssp             TTSCEEEECTTSCSS-CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC---------EEEECTTSCSSCSEEEC
T ss_pred             CCCeEEEEeCCCCCc-cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe---------EEEEeCCCCCCcceecc
Confidence            334599999998761 122223445555555      56899999988765554         66667665432222221


Q ss_pred             c-------CCCCce----eCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcC---CCCeEEEEecCCCCC
Q 004971          419 F-------DGSFPS----FSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDP---VREAVVYTSGGPEFA  481 (721)
Q Consensus       419 ~-------~~~~~~----~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~sp---dg~~la~~~~~~~~~  481 (721)
                      .       ....+.    |+|+++.|+... ++.|.+||+.+++.....  ...+..+.|+|   +++.|+..+      
T Consensus       158 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~------  231 (357)
T 3i2n_A          158 PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATS------  231 (357)
T ss_dssp             CCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEE------
T ss_pred             ccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEEC------
Confidence            1       111223    889999998885 689999999998865444  56788999999   999999886      


Q ss_pred             CCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCC-EEEEEEeeCCceeEEEEECCCCccc------------
Q 004971          482 SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGK-WIVFRSTRTGYKNLYIMDAEGGEGY------------  548 (721)
Q Consensus       482 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~-~l~~~s~~~g~~~l~~~d~~~g~~~------------  548 (721)
                       .++.+.+|++.............+..+...+..++|+|+++ .|+..+.   +..|++||+..+...            
T Consensus       232 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~g~~~~~  307 (357)
T 3i2n_A          232 -LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG---AGGLHLWKYEYPIQRSKKDSEGIEMGV  307 (357)
T ss_dssp             -STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET---TSEEEEEEEECCSCC--CCTTSCCCCC
T ss_pred             -CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC---CCcEEEeecCCCcccccccCCCCcccc
Confidence             57899999987643200001112235666788899999999 5665555   668999998755321            


Q ss_pred             -----ceEECcCCCcCceeeEEccCCCEEEE-EEccCCCCCCceeEEEEecCCCc
Q 004971          549 -----GLHRLTEGPWSDTMCNWSPDGEWIAF-ASDRDNPGSGSFEMYLIHPNGTG  597 (721)
Q Consensus       549 -----~~~~l~~~~~~~~~~~~SpDG~~l~~-~~~~~~~~~~~~~i~~~d~~~~~  597 (721)
                           .+..+..+...+..++|+|||+.|++ ++.++       .|++||+.+.+
T Consensus       308 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~-------~i~iw~~~~~~  355 (357)
T 3i2n_A          308 AGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ-------TVRVLIVTKLN  355 (357)
T ss_dssp             CCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS-------EEEEEEECC--
T ss_pred             ccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC-------cEEEEECCCcc
Confidence                 24445556667789999999999985 55554       89999987643

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.74  E-value=7.2e-16  Score=178.17  Aligned_cols=300  Identities=11%  Similarity=0.106  Sum_probs=194.1

Q ss_pred             ccCCe-EEEEeccCCCCcEEEEEEecCC--CcceeccccceEEeCCC-------CCcccCceeecCCCCEEEEEEecCCC
Q 004971          275 VDEST-LFFHRKSEEDDWISVYKVILPQ--TGLVSTESVSIQRVTPP-------GLHAFTPATSPGNNKFIAVATRRPTS  344 (721)
Q Consensus       275 s~dg~-l~~~~~~~~~g~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~~~~~~~sp~dG~~la~~~~~~g~  344 (721)
                      +|||+ ++|...........||+.....  ++       ..+.+.+.       ......++||| ||++|+|.....|.
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~lld~~~l~~~~~~~~~~~~~SP-DG~~la~~~~~~G~  186 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGT-------KGRVLLDPNTWAKDGATALDAWAASD-DGRLLAYSVQDGGS  186 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTC-------CCEEEECGGGCC----EEEEEEEECT-TSSEEEEEEEETTC
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCC-------CCEEEECHHHhccCCCEEEEeEEECC-CCCEEEEEEcCCCC
Confidence            36665 5665433322246788665441  22       34443222       12456789999 99999999888777


Q ss_pred             CeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC-----CCCCcceeEEEeccCCCCc-ceecc
Q 004971          345 SYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST-----REDGNNQLLLENIKSPLPD-ISLFR  418 (721)
Q Consensus       345 ~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~-~~~~~  418 (721)
                      +...|++||+++++.......   ......++|||| +.|+|.+.+....     ......+++++++.++... .....
T Consensus       187 e~~~i~v~dl~tg~~~~~~~~---~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~  262 (741)
T 1yr2_A          187 DWRTVKFVGVADGKPLADELK---WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA  262 (741)
T ss_dssp             SEEEEEEEETTTCCEEEEEEE---EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC
T ss_pred             ceEEEEEEECCCCCCCCccCC---CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec
Confidence            778899999999986543211   222357999999 9999987654310     0011246888888665321 11111


Q ss_pred             c-C----CCCceeCcCCCEEEEEe------CCcEEEEECCCC--c-eEEEee--cCceeeEEcCCCCeEEEEecCCCCCC
Q 004971          419 F-D----GSFPSFSPKGDRIAFVE------FPGVYVVNSDGS--N-RRQVYF--KNAFSTVWDPVREAVVYTSGGPEFAS  482 (721)
Q Consensus       419 ~-~----~~~~~~SpDG~~la~~~------~~~l~v~d~~~g--~-~~~l~~--~~~~~~~~spdg~~la~~~~~~~~~~  482 (721)
                      . .    ...+.|||||++|++..      ...|+++|++++  + .+.+..  .....+ ++|||++|++.++.     
T Consensus       263 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~-----  336 (741)
T 1yr2_A          263 TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGD-----  336 (741)
T ss_dssp             CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECT-----
T ss_pred             cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECC-----
Confidence            1 1    23478999999999883      248999999887  6 667762  233333 56999999999852     


Q ss_pred             CCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-CCcCc
Q 004971          483 ESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-GPWSD  560 (721)
Q Consensus       483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~~~~~  560 (721)
                      ...+..|+.++.++..  ...+.+..+. .....+.|+  +.+|++....++..+|+++++.++.   ...+.. ....+
T Consensus       337 ~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~---~~~l~~~~~~~v  409 (741)
T 1yr2_A          337 GAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKP---AGAVSLPGIGSA  409 (741)
T ss_dssp             TCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCE---EEECBCSSSCEE
T ss_pred             CCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCc---eeeccCCCCeEE
Confidence            2345677777776520  1344554433 222334454  6788888888888899999987554   566653 24455


Q ss_pred             eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971          561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI  602 (721)
Q Consensus       561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  602 (721)
                      ..++++||++.|++.....   .....||+||+.+++.+.+.
T Consensus       410 ~~~~~s~d~~~l~~~~ss~---~~P~~i~~~d~~tg~~~~l~  448 (741)
T 1yr2_A          410 SGLSGRPGDRHAYLSFSSF---TQPATVLALDPATAKTTPWE  448 (741)
T ss_dssp             EEEECCBTCSCEEEEEEET---TEEEEEEEEETTTTEEEECS
T ss_pred             EEeecCCCCCEEEEEEcCC---CCCCEEEEEECCCCcEEEEe
Confidence            7789999999888876543   35568999999998765553

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.74  E-value=4.1e-17  Score=179.09  Aligned_cols=314  Identities=12%  Similarity=0.069  Sum_probs=185.9

Q ss_pred             ccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCC------CCEEEEEEecCCCCeee
Q 004971          275 VDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGN------NKFIAVATRRPTSSYRH  348 (721)
Q Consensus       275 s~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~d------G~~la~~~~~~g~~~~~  348 (721)
                      +|+++++.+  ...++.+.||.+.......     .....+..+...+..++|+| +      +..|+..+     .++.
T Consensus       170 ~~~~~~laS--~s~D~tI~iWd~~~~~~~~-----~~~~~l~~~~~~V~~v~wsp-~~~~~~~~~~LAs~s-----~Dgt  236 (524)
T 2j04_B          170 NEHLEMFDK--EKHSSCIQIFKMNTSTLHC-----VKVQTIVHSFGEVWDLKWHE-GCHAPHLVGCLSFVS-----QEGT  236 (524)
T ss_dssp             --------------CEEEEEEEEETTTCCE-----EEEEEEEECCCSEEEEEECS-SCCCSSSSCEEEEEE-----TTSC
T ss_pred             chhhhhhcc--CCCCceEEEEEccCCCCCc-----eEEEEEEecCCcEEEEEECC-CCCCCCCCceEEEEe-----cCCe
Confidence            567676652  3447889999764332100     00111233334567889998 7      46777654     3456


Q ss_pred             EEEEECCCCceE---------EeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce---e
Q 004971          349 IELFDLVKNKFI---------ELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS---L  416 (721)
Q Consensus       349 l~l~dl~tg~~~---------~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~  416 (721)
                      |++||+.+++..         .......+...+..++|++++ .|+..+.++.         +.++++..+.....   .
T Consensus       237 vrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~Dgt---------V~lWD~~~~~~~~~~~~~  306 (524)
T 2j04_B          237 INFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGF---------VAEFDLTDPEVPSFYDQV  306 (524)
T ss_dssp             EEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSE---------EEEEETTBCSSCSEEEEC
T ss_pred             EEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCE---------EEEEECCCCCCceEEeec
Confidence            999999876421         011223455677889999875 6766554443         66677764422222   1


Q ss_pred             cccCCCCc--eeCcCC-CEEEEEe-CCcEEEEECCCCce-EEEe---e-cCceeeEEcCCCCeEEEEecCCCCCCCCCcE
Q 004971          417 FRFDGSFP--SFSPKG-DRIAFVE-FPGVYVVNSDGSNR-RQVY---F-KNAFSTVWDPVREAVVYTSGGPEFASESSEV  487 (721)
Q Consensus       417 ~~~~~~~~--~~SpDG-~~la~~~-~~~l~v~d~~~g~~-~~l~---~-~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  487 (721)
                      ....+..+  .|+|+| +.|+.++ ++.|.+||+.+++. ..+.   . ..+..++|+|+++.++..+       .++.+
T Consensus       307 H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~-------~d~tv  379 (524)
T 2j04_B          307 HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD-------GASSL  379 (524)
T ss_dssp             SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC-------SSSEE
T ss_pred             ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC-------CCCcE
Confidence            22223344  578998 7777775 78899999987653 2222   1 2467899999999988765       46778


Q ss_pred             EEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-----CCcCcee
Q 004971          488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-----GPWSDTM  562 (721)
Q Consensus       488 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-----~~~~~~~  562 (721)
                      +||++....     ....+..+...+..++|||||+.|+..+.   +..|.+||+..+.   +.....     ....+..
T Consensus       380 ~lwd~~~~~-----~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~---Dgtv~lwd~~~~~---~~~~~~~~~~~~~~~v~~  448 (524)
T 2j04_B          380 RAVPSRAAF-----AVHPLVSRETTITAIGVSRLHPMVLAGSA---DGSLIITNAARRL---LHGIKNSSATQKSLRLWK  448 (524)
T ss_dssp             EEEETTCTT-----CCEEEEECSSCEEEEECCSSCCBCEEEET---TTEEECCBSCSST---TTCC------CCCCEEEE
T ss_pred             EEEECcccc-----cceeeecCCCceEEEEeCCCCCeEEEEEC---CCEEEEEechHhh---ccccccCccceeeeEEEE
Confidence            898765432     44567777788899999999999998887   7889999987543   221111     1113457


Q ss_pred             eEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCC---EEEEEEecCCCcCCCCCCC
Q 004971          563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK---SIVFTSDYGGISAEPISTP  639 (721)
Q Consensus       563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~---~l~~~~~~~~~~~~~~~~~  639 (721)
                      ++|||||+.+.+  .+.      ..++.++..+.....+.  ++...+..++|+||+.   +|+..+.++          
T Consensus       449 v~~sp~g~~~~~--~~~------~~~~~~~~~g~~~~~l~--gh~~~V~~Vafsp~~~~~~~lAsg~~~g----------  508 (524)
T 2j04_B          449 WDYSIKDDKYRI--DSS------YEVYPLTVNDVSKAKID--AHGINITCTKWNETSAGGKCYAFSNSAG----------  508 (524)
T ss_dssp             CBCCSSSCEEEE--CCC------CCCCC---------------CCCSCCCEEECCSTTTTTEEEEECTTS----------
T ss_pred             eccCCCCCeEEc--cCC------ceecccccCCcceeeec--CCCceEEEEECCCCCCccHHHHhhccCc----------
Confidence            899999995532  221      13444443343333333  3678899999999964   776655444          


Q ss_pred             CCCCCCccEEEEEcCCC
Q 004971          640 HQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       640 ~~~~~~~~l~~~d~~~~  656 (721)
                             .|.+|++++.
T Consensus       509 -------~vrlw~l~~~  518 (524)
T 2j04_B          509 -------LLTLEYLSLE  518 (524)
T ss_dssp             -------EEEEEECSCC
T ss_pred             -------eEEEEEcccc
Confidence                   3888888764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.74  E-value=1.2e-15  Score=162.90  Aligned_cols=279  Identities=11%  Similarity=0.071  Sum_probs=188.4

Q ss_pred             ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeC-CCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVT-PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      ..|+++ .++..  . .++.+.+|......         ...... .+...+..++|+| +|++|+....     ++.|.
T Consensus        99 ~~~s~~-~l~~~--~-~d~~v~lw~~~~~~---------~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~-----dg~i~  159 (401)
T 4aez_A           99 LDWSNL-NVVAV--A-LERNVYVWNADSGS---------VSALAETDESTYVASVKWSH-DGSFLSVGLG-----NGLVD  159 (401)
T ss_dssp             EEECTT-SEEEE--E-ETTEEEEEETTTCC---------EEEEEECCTTCCEEEEEECT-TSSEEEEEET-----TSCEE
T ss_pred             EeecCC-CEEEE--E-CCCeEEEeeCCCCc---------EeEeeecCCCCCEEEEEECC-CCCEEEEECC-----CCeEE
Confidence            356654 44442  2 26788888543221         222222 2455678899999 9999988543     34599


Q ss_pred             EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee---cccCCCCceeC
Q 004971          351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL---FRFDGSFPSFS  427 (721)
Q Consensus       351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~S  427 (721)
                      +||+.+++..  .....+...+..+.|  +++.|+....++         .+.++++......+..   .......++|+
T Consensus       160 iwd~~~~~~~--~~~~~~~~~v~~~~~--~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  226 (401)
T 4aez_A          160 IYDVESQTKL--RTMAGHQARVGCLSW--NRHVLSSGSRSG---------AIHHHDVRIANHQIGTLQGHSSEVCGLAWR  226 (401)
T ss_dssp             EEETTTCCEE--EEECCCSSCEEEEEE--ETTEEEEEETTS---------EEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred             EEECcCCeEE--EEecCCCCceEEEEE--CCCEEEEEcCCC---------CEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence            9999988743  333456667777888  466777655443         3666776533222222   22234457899


Q ss_pred             cCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccce
Q 004971          428 PKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAV  503 (721)
Q Consensus       428 pDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  503 (721)
                      |||+.|+..+ ++.|.+||+.+++.....   ...+..+.|+|++..++++..+    ..++.+.+|++....     ..
T Consensus       227 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g----s~d~~i~i~d~~~~~-----~~  297 (401)
T 4aez_A          227 SDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG----TMDKQIHFWNAATGA-----RV  297 (401)
T ss_dssp             TTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECC----TTTCEEEEEETTTCC-----EE
T ss_pred             CCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecC----CCCCEEEEEECCCCC-----EE
Confidence            9999999885 689999999987755433   5678899999999888877521    146788888775432     34


Q ss_pred             EEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCC
Q 004971          504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGS  583 (721)
Q Consensus       504 ~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~  583 (721)
                      ..+. ....+..++|+|+|+.|++.+.. .+..|++||+.+++......+..+...+..++|+|||++|+.++.++    
T Consensus       298 ~~~~-~~~~v~~~~~s~~~~~l~~~~g~-~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg----  371 (401)
T 4aez_A          298 NTVD-AGSQVTSLIWSPHSKEIMSTHGF-PDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE----  371 (401)
T ss_dssp             EEEE-CSSCEEEEEECSSSSEEEEEECT-TTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS----
T ss_pred             EEEe-CCCcEEEEEECCCCCeEEEEeec-CCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC----
Confidence            4443 44577889999999999987621 15789999998876433444556667788999999999999988775    


Q ss_pred             CceeEEEEecCCCceEE
Q 004971          584 GSFEMYLIHPNGTGLRK  600 (721)
Q Consensus       584 ~~~~i~~~d~~~~~~~~  600 (721)
                         .|++|++.+++...
T Consensus       372 ---~i~iw~~~~~~~~~  385 (401)
T 4aez_A          372 ---NLKFWRVYDGDHVK  385 (401)
T ss_dssp             ---EEEEEECCC-----
T ss_pred             ---cEEEEECCCCcccc
Confidence               89999998876443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.73  E-value=1.2e-15  Score=174.73  Aligned_cols=264  Identities=11%  Similarity=0.088  Sum_probs=184.7

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC----CC
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST----RE  396 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~----~~  396 (721)
                      .+..++||| ||++|+|.....|++...|+++|+++|+.......   ......++|| ||+.|+|.+.+....    ..
T Consensus       130 ~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~---~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          130 ALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK---DVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             EEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE---EEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             EEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCccccC---CceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            455779999 99999999888888888999999999986544211   2224578999 999999988764200    01


Q ss_pred             CCcceeEEEeccCCCCc-ceecccC------CCCceeCcCCCEEEEEe-----CCcEEEEECCCC--ceEEEeec-Ccee
Q 004971          397 DGNNQLLLENIKSPLPD-ISLFRFD------GSFPSFSPKGDRIAFVE-----FPGVYVVNSDGS--NRRQVYFK-NAFS  461 (721)
Q Consensus       397 ~~~~~l~~~~~~~~~~~-~~~~~~~------~~~~~~SpDG~~la~~~-----~~~l~v~d~~~g--~~~~l~~~-~~~~  461 (721)
                      ....+++++++.++... .......      ...+.|||||++|++..     ...||++|++++  +.+.+... ....
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~  284 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV  284 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence            11256888888765321 1222111      12468999999998872     258999999876  56666622 2222


Q ss_pred             eEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEE
Q 004971          462 TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD  541 (721)
Q Consensus       462 ~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d  541 (721)
                      ..|+++|++|++.++.     +..+..|+.++.++. .....+.+..+.....  .|+|+|++|++...+++..+|++++
T Consensus       285 ~~~~~~g~~l~~~t~~-----~~~~~~l~~~d~~~~-~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d  356 (693)
T 3iuj_A          285 SLVDNKGSTLYLLTNR-----DAPNRRLVTVDAANP-GPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFD  356 (693)
T ss_dssp             EEEEEETTEEEEEECT-----TCTTCEEEEEETTSC-CGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred             EEEeccCCEEEEEECC-----CCCCCEEEEEeCCCC-CccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence            3389999999998852     234678888888764 1112356666553433  9999999999999888888999999


Q ss_pred             CCCCcccceEECcC-CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971          542 AEGGEGYGLHRLTE-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ  603 (721)
Q Consensus       542 ~~~g~~~~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  603 (721)
                      ++++.   ...+.. ....+..+.++||++.|++.....   .....||.+|+.+++.+.+..
T Consensus       357 ~~g~~---~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~---~tP~~l~~~d~~~g~~~~l~~  413 (693)
T 3iuj_A          357 YEGKR---VREVALPGLGSVSGFNGKHDDPALYFGFENY---AQPPTLYRFEPKSGAISLYRA  413 (693)
T ss_dssp             TTSCE---EEEECCSSSSEEEECCCCTTCSCEEEEEECS---SSCCEEEEECTTTCCEEEEEC
T ss_pred             CCCCe---eEEeecCCCceEEeeecCCCCCEEEEEecCC---CCCCEEEEEECCCCeEEEEEe
Confidence            98765   455543 333456778899999998887653   244589999999988776654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.73  E-value=2e-15  Score=164.43  Aligned_cols=296  Identities=12%  Similarity=0.105  Sum_probs=202.7

Q ss_pred             cCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECC
Q 004971          276 DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLV  355 (721)
Q Consensus       276 ~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~  355 (721)
                      .++.++++  ...++.+.+|.+....         ....+..+...+..++|+| ++ .++...     .++.|.+||+.
T Consensus       130 ~~~~~l~s--gs~dg~i~vwd~~~~~---------~~~~~~~h~~~V~~l~~~~-~~-~l~s~s-----~dg~i~vwd~~  191 (464)
T 3v7d_B          130 FEDNYVIT--GADDKMIRVYDSINKK---------FLLQLSGHDGGVWALKYAH-GG-ILVSGS-----TDRTVRVWDIK  191 (464)
T ss_dssp             EETTEEEE--EETTSCEEEEETTTTE---------EEEEECCCSSCEEEEEECS-TT-EEEEEE-----TTSCEEEEETT
T ss_pred             ECCCEEEE--EcCCCcEEEEECCCCc---------EEEEEeCCCcCEEEEEEcC-CC-EEEEEe-----CCCCEEEEECC
Confidence            34455553  3337899999543222         4555666777788999999 88 565543     34569999999


Q ss_pred             CCceEEeecccCCCCcccCcEEc--CCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--------------------
Q 004971          356 KNKFIELTRFVSPKTHHLNPFIS--PDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--------------------  413 (721)
Q Consensus       356 tg~~~~l~~~~~~~~~~~~~~~S--pdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------------  413 (721)
                      +++..  .....+...+..+.|+  ++++.|+....++.         +.++++......                    
T Consensus       192 ~~~~~--~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~---------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (464)
T 3v7d_B          192 KGCCT--HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT---------LHVWKLPKESSVPDHGEEHDYPLVFHTPEENP  260 (464)
T ss_dssp             TTEEE--EEECCCSSCEEEEEEEESSSCEEEEEEETTSC---------EEEEECCCCCCC------CCSSEEESCGGGCT
T ss_pred             CCcEE--EEECCCCCccEEEEEecCCCCCEEEEEcCCCc---------EEEeeCCCCcccccccccCCcceEeeccCCCe
Confidence            98743  3334566777777887  57777877665554         455555443211                    


Q ss_pred             --ceec-ccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCc
Q 004971          414 --ISLF-RFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSE  486 (721)
Q Consensus       414 --~~~~-~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~  486 (721)
                        +... ........++++++.++..+ ++.|.+||+.+++.....   ...+..+.|+|+++.++..+       .++.
T Consensus       261 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-------~dg~  333 (464)
T 3v7d_B          261 YFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-------MDTT  333 (464)
T ss_dssp             TEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-------TTSC
T ss_pred             EEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe-------CCCc
Confidence              0011 11112236688999988885 789999999988754443   45678999999999999886       5788


Q ss_pred             EEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEc
Q 004971          487 VDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWS  566 (721)
Q Consensus       487 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~S  566 (721)
                      +.+|++....     ....+..+...+..+.|+  +++|+..+.   +..|++||+.+++.  .... .........+|+
T Consensus       334 i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~--~~~l~s~s~---dg~v~vwd~~~~~~--~~~~-~~~~~~~~~~~~  400 (464)
T 3v7d_B          334 IRIWDLENGE-----LMYTLQGHTALVGLLRLS--DKFLVSAAA---DGSIRGWDANDYSR--KFSY-HHTNLSAITTFY  400 (464)
T ss_dssp             EEEEETTTTE-----EEEEECCCSSCEEEEEEC--SSEEEEEET---TSEEEEEETTTCCE--EEEE-ECTTCCCEEEEE
T ss_pred             EEEEECCCCc-----EEEEEeCCCCcEEEEEEc--CCEEEEEeC---CCcEEEEECCCCce--eeee-cCCCCccEEEEE
Confidence            9999875432     556666666667777776  678888887   78899999998763  2222 233445678999


Q ss_pred             cCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       567 pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      |+++.|+.+. ++       .|++||+.+++........+...+..++|+  ++.++.+..+++
T Consensus       401 ~~~~~l~~~~-dg-------~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g  454 (464)
T 3v7d_B          401 VSDNILVSGS-EN-------QFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDG  454 (464)
T ss_dssp             ECSSEEEEEE-TT-------EEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETT
T ss_pred             eCCCEEEEec-CC-------eEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCC
Confidence            9999988877 43       899999999987654323356677788886  677777776665

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.73  E-value=1.8e-15  Score=156.77  Aligned_cols=252  Identities=11%  Similarity=0.082  Sum_probs=164.0

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC---CCCcccCcEEcCCCCEEEEEEeeCCCC-CC
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS---PKTHHLNPFISPDSSRVGYHKCRGGST-RE  396 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~---~~~~~~~~~~Spdg~~l~~~~~~~~~~-~~  396 (721)
                      ....++|+| ||+++++....    +..|++||+.+++.........   +......++|+|||++|++........ .+
T Consensus        35 ~~~~~~~s~-dg~~l~v~~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  109 (337)
T 1pby_B           35 TPMVPMVAP-GGRIAYATVNK----SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH  109 (337)
T ss_dssp             CCCCEEECT-TSSEEEEEETT----TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CccceEEcC-CCCEEEEEeCC----CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccc
Confidence            357899999 99988775432    3459999999987543222111   011466789999999998875321000 00


Q ss_pred             C--CcceeEEEeccCCCCc-ceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-e-cCceeeEEcCCCCeE
Q 004971          397 D--GNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-F-KNAFSTVWDPVREAV  471 (721)
Q Consensus       397 ~--~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-~-~~~~~~~~spdg~~l  471 (721)
                      .  ....++++++.++... ..........++|+|||++|++. .+.|++||+.+++..... . .......|+|||+.+
T Consensus       110 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l  188 (337)
T 1pby_B          110 FEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAV  188 (337)
T ss_dssp             EEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCC
T ss_pred             ccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEE
Confidence            0  0145777777654211 11122334567999999988887 678999999988765443 2 223456899999988


Q ss_pred             EEEecCCCCCCCCCcE---------------------EEEEEEccCCCCccceEE--cccCCCCCcceEEccCCCEEEEE
Q 004971          472 VYTSGGPEFASESSEV---------------------DIISINVDDVDGVSAVRR--LTTNGKNNAFPSVSPDGKWIVFR  528 (721)
Q Consensus       472 a~~~~~~~~~~~~~~~---------------------~i~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~SpDg~~l~~~  528 (721)
                      ++...      ....+                     .|+.++..+.    +...  +.........++|+|||++|++.
T Consensus       189 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  258 (337)
T 1pby_B          189 WNQHE------SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG----EMAMREVRIMDVFYFSTAVNPAKTRAFGA  258 (337)
T ss_dssp             CCCCT------TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC----CEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             eeecc------CCCceeeeeeccccccccccccccccceEEEeCCCC----CceEeecCCCCCceeeEEECCCCCEEEEe
Confidence            76542      11211                     4666666553    3222  22233345568999999999887


Q ss_pred             EeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971          529 STRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ  603 (721)
Q Consensus       529 s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  603 (721)
                           +..|++||+.+++.  +..+..+ .....++|+|||++|+++..+.       .|++||+.+++......
T Consensus       259 -----~~~v~~~d~~~~~~--~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~-------~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          259 -----YNVLESFDLEKNAS--IKRVPLP-HSYYSVNVSTDGSTVWLGGALG-------DLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             -----ESEEEEEETTTTEE--EEEEECS-SCCCEEEECTTSCEEEEESBSS-------EEEEEETTTCCEEEEEE
T ss_pred             -----CCeEEEEECCCCcC--cceecCC-CceeeEEECCCCCEEEEEcCCC-------cEEEEECcCCcEEEEEE
Confidence                 25899999998874  3333322 3457899999999998875443       89999999887665543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.73  E-value=2.4e-16  Score=167.09  Aligned_cols=277  Identities=14%  Similarity=0.080  Sum_probs=181.0

Q ss_pred             cceeccCC-eEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeC--CCCCcccCceeecCCC-CEEEEEEecCCCCe
Q 004971          271 WPCWVDES-TLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVT--PPGLHAFTPATSPGNN-KFIAVATRRPTSSY  346 (721)
Q Consensus       271 ~~~ws~dg-~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~dG-~~la~~~~~~g~~~  346 (721)
                      ..+|+|++ +++++.  ..++.+.+|.+....         ....+.  .+...+..++|+| ++ ++|+...     .+
T Consensus        78 ~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~---------~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~-----~d  140 (383)
T 3ei3_B           78 SLEWHPTHPTTVAVG--SKGGDIILWDYDVQN---------KTSFIQGMGPGDAITGMKFNQ-FNTNQLFVSS-----IR  140 (383)
T ss_dssp             EEEECSSCTTEEEEE--EBTSCEEEEETTSTT---------CEEEECCCSTTCBEEEEEEET-TEEEEEEEEE-----TT
T ss_pred             EEEECCCCCCEEEEE--cCCCeEEEEeCCCcc---------cceeeecCCcCCceeEEEeCC-CCCCEEEEEe-----CC
Confidence            34799998 666642  337899999654332         233332  4566788999999 75 5555532     34


Q ss_pred             eeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC-CcceecccCCCCce
Q 004971          347 RHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL-PDISLFRFDGSFPS  425 (721)
Q Consensus       347 ~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~  425 (721)
                      ..|.+||+.+.....+.....+...+..++|+|+++.|+....++.         +.++++.... ..+.........++
T Consensus       141 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~---------i~i~d~~~~~~~~~~~h~~~v~~~~  211 (383)
T 3ei3_B          141 GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGR---------LLLLGLDGHEIFKEKLHKAKVTHAE  211 (383)
T ss_dssp             TEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSE---------EEEEETTSCEEEEEECSSSCEEEEE
T ss_pred             CEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCC---------EEEEECCCCEEEEeccCCCcEEEEE
Confidence            5699999997655555443333456788999999999988655443         6666664321 11111223345679


Q ss_pred             eCcCCC-EEEEEe-CCcEEEEECCC----CceEEEe--ecCceeeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          426 FSPKGD-RIAFVE-FPGVYVVNSDG----SNRRQVY--FKNAFSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       426 ~SpDG~-~la~~~-~~~l~v~d~~~----g~~~~l~--~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      |+|+++ .|+..+ ++.|.+||+..    +......  ...+..+.|+| +|+.|+..+       .++.+.||++....
T Consensus       212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~-------~d~~i~iwd~~~~~  284 (383)
T 3ei3_B          212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTD-------QRNEIRVYSSYDWS  284 (383)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEE-------SSSEEEEEETTBTT
T ss_pred             ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEc-------CCCcEEEEECCCCc
Confidence            999999 666664 77899999986    4433322  56788999999 999999886       46889999876543


Q ss_pred             CCCccceEEcccCC------CCCcceEEccCCCEEEEEEee------CCceeEEEEECCCCcccceEECcC--CCcCcee
Q 004971          497 VDGVSAVRRLTTNG------KNNAFPSVSPDGKWIVFRSTR------TGYKNLYIMDAEGGEGYGLHRLTE--GPWSDTM  562 (721)
Q Consensus       497 ~~~~~~~~~l~~~~------~~~~~~~~SpDg~~l~~~s~~------~g~~~l~~~d~~~g~~~~~~~l~~--~~~~~~~  562 (721)
                           ....+..+.      .......|+|++..+++....      ..+..|++||+.+++.  +..+..  +...+..
T Consensus       285 -----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~--~~~l~~~~~~~~~~~  357 (383)
T 3ei3_B          285 -----KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGL--VHQLRDPNAAGIISL  357 (383)
T ss_dssp             -----SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCE--EEEECBTTBCSCCCE
T ss_pred             -----cccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCce--eeeecCCCCCceEEE
Confidence                 222222211      112224666666666544321      1367899999998885  555554  2344556


Q ss_pred             eEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971          563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      ++|+|||+.|+.++ ++       .|++||+++
T Consensus       358 ~~~s~~g~~l~s~s-d~-------~i~iw~~~~  382 (383)
T 3ei3_B          358 NKFSPTGDVLASGM-GF-------NILIWNRED  382 (383)
T ss_dssp             EEECTTSSEEEEEE-TT-------EEEEEECC-
T ss_pred             EEEecCccEEEEec-CC-------cEEEEecCC
Confidence            79999999998886 54       899999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.73  E-value=3.4e-17  Score=179.78  Aligned_cols=281  Identities=10%  Similarity=0.015  Sum_probs=175.7

Q ss_pred             CCeeeEEEEECCCCceEE--eecccCCCCcccCcEEcCC------CCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--
Q 004971          344 SSYRHIELFDLVKNKFIE--LTRFVSPKTHHLNPFISPD------SSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--  413 (721)
Q Consensus       344 ~~~~~l~l~dl~tg~~~~--l~~~~~~~~~~~~~~~Spd------g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--  413 (721)
                      +.+..|.+||+.+++...  ......+...+..++|+|+      ++.|+..+.++.         +.++++..+...  
T Consensus       180 s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgt---------vrlWd~~~~~~~~~  250 (524)
T 2j04_B          180 KHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGT---------INFLEIIDNATDVH  250 (524)
T ss_dssp             --CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSC---------EEEEECCCCSSSSS
T ss_pred             CCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCe---------EEEEEcCCCccccc
Confidence            456789999998876321  1112234556778999997      568887766655         444555433110  


Q ss_pred             -----------ceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCc-e-EEEe--ecCceee--EEcCCC-CeEEEE
Q 004971          414 -----------ISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSN-R-RQVY--FKNAFST--VWDPVR-EAVVYT  474 (721)
Q Consensus       414 -----------~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~-~-~~l~--~~~~~~~--~~spdg-~~la~~  474 (721)
                                 +.........++|++++ .|+..+ ++.|.+||+.++. + ..+.  ...+..+  .|+|+| +.|+.+
T Consensus       251 ~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~  329 (524)
T 2j04_B          251 VFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV  329 (524)
T ss_dssp             EEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred             cceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence                       11111223457888875 677664 7899999998664 3 2233  4567777  678998 777777


Q ss_pred             ecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE
Q 004971          475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR  552 (721)
Q Consensus       475 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~  552 (721)
                      +       .++.++||++....     ....+..+.  ..+..++|+||++.|+..+.   +..|.+||+.++..  +..
T Consensus       330 S-------~D~tvklWD~~~~~-----~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~---d~tv~lwd~~~~~~--~~~  392 (524)
T 2j04_B          330 A-------VDGYFYIFNPKDIA-----TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG---ASSLRAVPSRAAFA--VHP  392 (524)
T ss_dssp             E-------TTSEEEEECGGGHH-----HHCEEEEECSCCSCCCEEEETTTTEEEEECS---SSEEEEEETTCTTC--CEE
T ss_pred             c-------cCCeEEEEECCCCC-----cccccccccccCcccceEeCCCcCeEEEeCC---CCcEEEEECccccc--cee
Confidence            6       57899999975432     222232222  23567999999999887765   66899999998774  456


Q ss_pred             CcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec---CCCCCcCCeEECCCCCEEEEEEecC
Q 004971          553 LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS---GSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       553 l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~---~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      +..+...+..++|||||+.|+.++.++       .|.+||+..+........   .....+..++|||||+.+.+  .+ 
T Consensus       393 l~gH~~~V~sva~Sp~g~~l~Sgs~Dg-------tv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--~~-  462 (524)
T 2j04_B          393 LVSRETTITAIGVSRLHPMVLAGSADG-------SLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--DS-  462 (524)
T ss_dssp             EEECSSCEEEEECCSSCCBCEEEETTT-------EEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEE--CC-
T ss_pred             eecCCCceEEEEeCCCCCeEEEEECCC-------EEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEc--cC-
Confidence            667777889999999999999988875       899999866422111000   00112457889999995532  22 


Q ss_pred             CCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCC
Q 004971          630 GISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~  676 (721)
                      ..               .++.++.++.....|..+...+...+|+|+
T Consensus       463 ~~---------------~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~  494 (524)
T 2j04_B          463 SY---------------EVYPLTVNDVSKAKIDAHGINITCTKWNET  494 (524)
T ss_dssp             CC---------------CCCC-------------CCCSCCCEEECCS
T ss_pred             Cc---------------eecccccCCcceeeecCCCceEEEEECCCC
Confidence            21               244444456667788888888999999997

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.72  E-value=2.8e-16  Score=165.53  Aligned_cols=239  Identities=11%  Similarity=0.036  Sum_probs=174.2

Q ss_pred             CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC----CcceecccCCCCceeCcCCCEEEEEe-CCcEE
Q 004971          368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL----PDISLFRFDGSFPSFSPKGDRIAFVE-FPGVY  442 (721)
Q Consensus       368 ~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~  442 (721)
                      +...+..++|+|||+.|++...++         .+.++++....    ..+.........++|+|+|+.|+..+ ++.|.
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~---------~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~   77 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNH---------EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAY   77 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSS---------EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCC---------EEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEE
Confidence            355677899999999998865443         35566655442    11111223344679999999998885 68899


Q ss_pred             EEECCCCceEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc-ccCCCCCcce
Q 004971          443 VVNSDGSNRRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL-TTNGKNNAFP  516 (721)
Q Consensus       443 v~d~~~g~~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l-~~~~~~~~~~  516 (721)
                      +||+.+++.....     ...+..+.|+|+++.|++.+       .++.+.+|+++....  ......+ ..+...+..+
T Consensus        78 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~d~~v~i~d~~~~~~--~~~~~~~~~~~~~~i~~~  148 (372)
T 1k8k_C           78 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS-------GSRVISICYFEQEND--WWVCKHIKKPIRSTVLSL  148 (372)
T ss_dssp             EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE-------TTSSEEEEEEETTTT--EEEEEEECTTCCSCEEEE
T ss_pred             EEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEe-------CCCEEEEEEecCCCc--ceeeeeeecccCCCeeEE
Confidence            9999888643322     45678999999999999987       568899999987542  0012222 3345677889


Q ss_pred             EEccCCCEEEEEEeeCCceeEEEEECC------------------CCcccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971          517 SVSPDGKWIVFRSTRTGYKNLYIMDAE------------------GGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~------------------~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~  578 (721)
                      +|+||+++|+..+.   +..|++||+.                  .++.  +..+..+...+..+.|+|||+.|+.+..+
T Consensus       149 ~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  223 (372)
T 1k8k_C          149 DWHPNSVLLAAGSC---DFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL--MFESSSSCGWVHGVCFSANGSRVAWVSHD  223 (372)
T ss_dssp             EECTTSSEEEEEET---TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE--EEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             EEcCCCCEEEEEcC---CCCEEEEEcccccccccccccccccccchhhh--eEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence            99999999998886   7789999954                  3443  55566666677899999999999999877


Q ss_pred             CCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971          579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       579 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                      +       .|++||+.+++....... +...+..++|+|||++|+.. .++                 .|++|++..
T Consensus       224 ~-------~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~d~-----------------~i~i~~~~~  274 (372)
T 1k8k_C          224 S-------TVCLADADKKMAVATLAS-ETLPLLAVTFITESSLVAAG-HDC-----------------FPVLFTYDS  274 (372)
T ss_dssp             T-------EEEEEEGGGTTEEEEEEC-SSCCEEEEEEEETTEEEEEE-TTS-----------------SCEEEEEET
T ss_pred             C-------EEEEEECCCCceeEEEcc-CCCCeEEEEEecCCCEEEEE-eCC-----------------eEEEEEccC
Confidence            5       899999988876655543 56678899999999977654 333                 377888766

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.72  E-value=8.2e-16  Score=163.66  Aligned_cols=279  Identities=10%  Similarity=0.024  Sum_probs=187.2

Q ss_pred             ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCC----C---CEEEEEEecCCC
Q 004971          272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGN----N---KFIAVATRRPTS  344 (721)
Q Consensus       272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~d----G---~~la~~~~~~g~  344 (721)
                      .+|+|  +++++  ...++.+.+|.+......   ........+..+...+..++|+| +    |   ++|+....    
T Consensus        22 ~~~~~--~~l~s--~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~s~~~----   89 (397)
T 1sq9_A           22 VSACN--SFTVS--CSGDGYLKVWDNKLLDNE---NPKDKSYSHFVHKSGLHHVDVLQ-AIERDAFELCLVATTSF----   89 (397)
T ss_dssp             EEECS--SEEEE--EETTSEEEEEESBCCTTC---CGGGGEEEEECCTTCEEEEEEEE-EEETTTEEEEEEEEEET----
T ss_pred             EEecC--CeEEE--EcCCCEEEEEECCCcccc---cCCCcceEEecCCCcEEEEEEec-ccccCCccccEEEEEcC----
Confidence            46777  34442  233788999965433200   00012455556666788999999 9    8   88877542    


Q ss_pred             CeeeEEEEECCCCce---EEeecccCC-----CCcccCcEEc----CCCCE-EEEEEeeCCCCCCCCcceeEEEeccC--
Q 004971          345 SYRHIELFDLVKNKF---IELTRFVSP-----KTHHLNPFIS----PDSSR-VGYHKCRGGSTREDGNNQLLLENIKS--  409 (721)
Q Consensus       345 ~~~~l~l~dl~tg~~---~~l~~~~~~-----~~~~~~~~~S----pdg~~-l~~~~~~~~~~~~~~~~~l~~~~~~~--  409 (721)
                       +..|++||+.+++.   ..+.....+     ...+..+.|+    |+++. |+....++.         +.++++..  
T Consensus        90 -dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~---------i~iwd~~~~~  159 (397)
T 1sq9_A           90 -SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT---------TYIWKFHPFA  159 (397)
T ss_dssp             -TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSC---------EEEEEEESSS
T ss_pred             -CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCc---------EEEEeCCccc
Confidence             34599999988762   002222233     3667889999    99999 877665544         45555544  


Q ss_pred             ----C--CC-----cce-------ecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---------ecCcee
Q 004971          410 ----P--LP-----DIS-------LFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---------FKNAFS  461 (721)
Q Consensus       410 ----~--~~-----~~~-------~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---------~~~~~~  461 (721)
                          .  ..     .+.       ........++|+|+| .|+... ++.|.+||+.+++.....         ...+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~  238 (397)
T 1sq9_A          160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS  238 (397)
T ss_dssp             SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred             cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccce
Confidence                2  11     111       013334567999999 777774 788999999887754332         235678


Q ss_pred             eEEcCCCCeEEEEecCCCCCCCC---CcEEEEEEEccCCCCccceEEccc-------------CCCCCcceEEccCCCEE
Q 004971          462 TVWDPVREAVVYTSGGPEFASES---SEVDIISINVDDVDGVSAVRRLTT-------------NGKNNAFPSVSPDGKWI  525 (721)
Q Consensus       462 ~~~spdg~~la~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~l~~-------------~~~~~~~~~~SpDg~~l  525 (721)
                      +.|+|+++.|+..+       .+   +.+.+|++....     ....+..             +...+..++|+|||++|
T Consensus       239 i~~~~~~~~l~~~~-------~d~~~g~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  306 (397)
T 1sq9_A          239 VKFSPQGSLLAIAH-------DSNSFGCITLYETEFGE-----RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL  306 (397)
T ss_dssp             EEECSSTTEEEEEE-------EETTEEEEEEEETTTCC-----EEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred             EEECCCCCEEEEEe-------cCCCCceEEEEECCCCc-----ccceeccCcccccccccccccCCcEEEEEECCCCCEE
Confidence            99999999999886       34   677777765432     4555655             56677889999999999


Q ss_pred             EEEEeeCCceeEEEEECCCCcccceEECc------CC---------------CcCceeeEEccCC----------CEEEE
Q 004971          526 VFRSTRTGYKNLYIMDAEGGEGYGLHRLT------EG---------------PWSDTMCNWSPDG----------EWIAF  574 (721)
Q Consensus       526 ~~~s~~~g~~~l~~~d~~~g~~~~~~~l~------~~---------------~~~~~~~~~SpDG----------~~l~~  574 (721)
                      +..+.   +..|++||+.+++.  +..+.      .+               ...+..++|+|||          +.|+.
T Consensus       307 ~~~~~---dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s  381 (397)
T 1sq9_A          307 CSAGW---DGKLRFWDVKTKER--ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCC  381 (397)
T ss_dssp             EEEET---TSEEEEEETTTTEE--EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEE
T ss_pred             EEEeC---CCeEEEEEcCCCce--eEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEE
Confidence            98886   78999999998875  55555      44               5667899999999          68888


Q ss_pred             EEccCCCCCCceeEEEEecCCCc
Q 004971          575 ASDRDNPGSGSFEMYLIHPNGTG  597 (721)
Q Consensus       575 ~~~~~~~~~~~~~i~~~d~~~~~  597 (721)
                      ++.++       .|.+|++.+|+
T Consensus       382 ~~~dg-------~i~iw~~~~g~  397 (397)
T 1sq9_A          382 VCLDR-------SIRWFREAGGK  397 (397)
T ss_dssp             EETTT-------EEEEEEEEC--
T ss_pred             ecCCC-------cEEEEEcCCCC
Confidence            88775       89999988763

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.72  E-value=2.4e-16  Score=165.48  Aligned_cols=279  Identities=10%  Similarity=0.034  Sum_probs=186.5

Q ss_pred             EEeCCCCCcccCceeecCC---CCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEe
Q 004971          313 QRVTPPGLHAFTPATSPGN---NKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKC  389 (721)
Q Consensus       313 ~~~~~~~~~~~~~~~sp~d---G~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~  389 (721)
                      ..+..+...+..++|+| +   |++|+...     .++.|.+||+.+...........+...+..++|+|+++.|+....
T Consensus        33 ~~~~~h~~~v~~~~~~~-~~~~g~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  106 (368)
T 3mmy_A           33 EVTSSPDDSIGCLSFSP-PTLPGNFLIAGS-----WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC  106 (368)
T ss_dssp             ECSSCCSSCEEEEEECC-TTSSSEEEEEEE-----TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             EeccCCCCceEEEEEcC-CCCCceEEEEEC-----CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence            33445666788999999 8   58887754     345699999987332222333456777889999999999998665


Q ss_pred             eCCCCCCCCcceeEEEeccCCCC-cceecccCCCCcee--CcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeE
Q 004971          390 RGGSTREDGNNQLLLENIKSPLP-DISLFRFDGSFPSF--SPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTV  463 (721)
Q Consensus       390 ~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~--SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~  463 (721)
                      ++.         +.++++..... .+.........+.|  +|+++.|+..+ ++.|.+||+.+++.....  ...+..+.
T Consensus       107 dg~---------v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  177 (368)
T 3mmy_A          107 DKT---------AKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCAD  177 (368)
T ss_dssp             TSE---------EEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEE
T ss_pred             CCc---------EEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEE
Confidence            443         66667655421 11222233445788  99998888875 788999999887754333  23333444


Q ss_pred             EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCE----EEEEEeeCCceeEE
Q 004971          464 WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKW----IVFRSTRTGYKNLY  538 (721)
Q Consensus       464 ~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~----l~~~s~~~g~~~l~  538 (721)
                      +.  ...+++..       .++.+.+|.+.....    ....+.... .......+.+++..    ++..+.   +..|.
T Consensus       178 ~~--~~~~~~~~-------~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---dg~i~  241 (368)
T 3mmy_A          178 VI--YPMAVVAT-------AERGLIVYQLENQPS----EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI---EGRVA  241 (368)
T ss_dssp             EE--TTEEEEEE-------GGGCEEEEECSSSCE----EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET---TSEEE
T ss_pred             ec--CCeeEEEe-------CCCcEEEEEeccccc----hhhhccccccCCCceEEEcccCCCCCCeEEEecC---CCcEE
Confidence            44  44666654       457788888765432    223332221 23344555555544    777666   77899


Q ss_pred             EEECCCCcc-cceEECcCCCc------------CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC
Q 004971          539 IMDAEGGEG-YGLHRLTEGPW------------SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG  605 (721)
Q Consensus       539 ~~d~~~g~~-~~~~~l~~~~~------------~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~  605 (721)
                      +|++..... .....+..+..            .+..++|+|||++|+.++.++       .|++||+.+++....... 
T Consensus       242 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~-  313 (368)
T 3mmy_A          242 IHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG-------RFSFWDKDARTKLKTSEQ-  313 (368)
T ss_dssp             EEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS-------CEEEEETTTTEEEEECCC-
T ss_pred             EEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC-------eEEEEECCCCcEEEEecC-
Confidence            999987642 22333333322            478899999999999998875       799999998876655443 


Q ss_pred             CCCCcCCeEECCCCCEEEEEEecCC
Q 004971          606 SAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       606 ~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      +...+..++|+|||++|+..+.++.
T Consensus       314 ~~~~v~~~~~s~~g~~l~~~s~d~~  338 (368)
T 3mmy_A          314 LDQPISACCFNHNGNIFAYASSYDW  338 (368)
T ss_dssp             CSSCEEEEEECTTSSCEEEEECCCS
T ss_pred             CCCCceEEEECCCCCeEEEEecccc
Confidence            6778899999999999999887653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.72  E-value=2e-15  Score=164.48  Aligned_cols=292  Identities=10%  Similarity=-0.006  Sum_probs=204.5

Q ss_pred             eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEE
Q 004971          326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLE  405 (721)
Q Consensus       326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~  405 (721)
                      ++++ ++++|+...     .++.|.+||+.+++.  +.....+...+..++|+|++ .|+..+.++.         +.++
T Consensus       127 ~~~~-~~~~l~sgs-----~dg~i~vwd~~~~~~--~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~---------i~vw  188 (464)
T 3v7d_B          127 CLQF-EDNYVITGA-----DDKMIRVYDSINKKF--LLQLSGHDGGVWALKYAHGG-ILVSGSTDRT---------VRVW  188 (464)
T ss_dssp             EEEE-ETTEEEEEE-----TTSCEEEEETTTTEE--EEEECCCSSCEEEEEECSTT-EEEEEETTSC---------EEEE
T ss_pred             EEEE-CCCEEEEEc-----CCCcEEEEECCCCcE--EEEEeCCCcCEEEEEEcCCC-EEEEEeCCCC---------EEEE
Confidence            4566 788887754     345699999999874  34445677888899999998 6666554444         5666


Q ss_pred             eccCCCCccee--cccCCCCceeC--cCCCEEEEEe-CCcEEEEECCCCceEE------------------------Eee
Q 004971          406 NIKSPLPDISL--FRFDGSFPSFS--PKGDRIAFVE-FPGVYVVNSDGSNRRQ------------------------VYF  456 (721)
Q Consensus       406 ~~~~~~~~~~~--~~~~~~~~~~S--pDG~~la~~~-~~~l~v~d~~~g~~~~------------------------l~~  456 (721)
                      ++..+......  .......+.|+  ++++.++..+ ++.|.+||+.++....                        +..
T Consensus       189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (464)
T 3v7d_B          189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  268 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred             ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence            66544211111  11222335666  6777777774 7899999998765321                        112


Q ss_pred             cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCcee
Q 004971          457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN  536 (721)
Q Consensus       457 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~  536 (721)
                      ....-..++++++.++..+       .++.+.+|++....     ....+..+...+..++|+||+++|+..+.   +..
T Consensus       269 ~~~~v~~~~~~~~~l~~~~-------~d~~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---dg~  333 (464)
T 3v7d_B          269 HMASVRTVSGHGNIVVSGS-------YDNTLIVWDVAQMK-----CLYILSGHTDRIYSTIYDHERKRCISASM---DTT  333 (464)
T ss_dssp             CSSCEEEEEEETTEEEEEE-------TTSCEEEEETTTTE-----EEEEECCCSSCEEEEEEETTTTEEEEEET---TSC
T ss_pred             ccceEEEEcCCCCEEEEEe-------CCCeEEEEECCCCc-----EEEEecCCCCCEEEEEEcCCCCEEEEEeC---CCc
Confidence            2223345688999999886       56889999875432     45566666677888999999999998887   788


Q ss_pred             EEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEEC
Q 004971          537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFS  616 (721)
Q Consensus       537 l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~S  616 (721)
                      |++||+.+++.  +..+..+...+..+.|+  +++|+.++.++       .|.+||+.+++......  +........|+
T Consensus       334 i~vwd~~~~~~--~~~~~~h~~~v~~~~~~--~~~l~s~s~dg-------~v~vwd~~~~~~~~~~~--~~~~~~~~~~~  400 (464)
T 3v7d_B          334 IRIWDLENGEL--MYTLQGHTALVGLLRLS--DKFLVSAAADG-------SIRGWDANDYSRKFSYH--HTNLSAITTFY  400 (464)
T ss_dssp             EEEEETTTTEE--EEEECCCSSCEEEEEEC--SSEEEEEETTS-------EEEEEETTTCCEEEEEE--CTTCCCEEEEE
T ss_pred             EEEEECCCCcE--EEEEeCCCCcEEEEEEc--CCEEEEEeCCC-------cEEEEECCCCceeeeec--CCCCccEEEEE
Confidence            99999998875  66666666677788887  57888888875       89999998876544433  45566778999


Q ss_pred             CCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEE--eccCCCCCCCceecCCcCCcc
Q 004971          617 PDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR--LTQNSFEDGTPAWGPRFIRPV  681 (721)
Q Consensus       617 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--lt~~~~~~~~~~~sp~~l~~~  681 (721)
                      |+|++|+..+ ++                 .|++||+.+++...  +..+...+...+|+...+..+
T Consensus       401 ~~~~~l~~~~-dg-----------------~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~  449 (464)
T 3v7d_B          401 VSDNILVSGS-EN-----------------QFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAA  449 (464)
T ss_dssp             ECSSEEEEEE-TT-----------------EEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEE
T ss_pred             eCCCEEEEec-CC-----------------eEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEE
Confidence            9999888766 33                 49999999987754  444555567778876654443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.72  E-value=1e-15  Score=175.80  Aligned_cols=275  Identities=16%  Similarity=0.094  Sum_probs=188.4

Q ss_pred             cceeccCC-eEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeE
Q 004971          271 WPCWVDES-TLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHI  349 (721)
Q Consensus       271 ~~~ws~dg-~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l  349 (721)
                      ..+|++++ .++++  ...++.+.+|++.......    ......+..|...+..++|+| ||++|+..+     .+..|
T Consensus       387 ~v~~~~~~~~~l~s--~s~D~~i~~W~~~~~~~~~----~~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs-----~Dg~v  454 (694)
T 3dm0_A          387 AIATPIDNADIIVS--ASRDKSIILWKLTKDDKAY----GVAQRRLTGHSHFVEDVVLSS-DGQFALSGS-----WDGEL  454 (694)
T ss_dssp             EEECCTTCCSEEEE--EETTSEEEEEECCCSTTCS----CEEEEEEECCSSCEEEEEECT-TSSEEEEEE-----TTSEE
T ss_pred             EEEecCCCCCEEEE--EeCCCcEEEEEccCCCccc----ccccceecCCCCcEEEEEECC-CCCEEEEEe-----CCCcE
Confidence            34788775 56664  3347999999765432110    002345667777788999999 999988754     44569


Q ss_pred             EEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce-----ecccCCCCc
Q 004971          350 ELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS-----LFRFDGSFP  424 (721)
Q Consensus       350 ~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~  424 (721)
                      ++||+.+++..  .....|...+..++|+|+++.|+..+.++.         +.+++.........     ........+
T Consensus       455 ~vwd~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~---------i~iwd~~~~~~~~~~~~~~~h~~~v~~~  523 (694)
T 3dm0_A          455 RLWDLAAGVST--RRFVGHTKDVLSVAFSLDNRQIVSASRDRT---------IKLWNTLGECKYTISEGGEGHRDWVSCV  523 (694)
T ss_dssp             EEEETTTTEEE--EEEECCSSCEEEEEECTTSSCEEEEETTSC---------EEEECTTSCEEEEECSSTTSCSSCEEEE
T ss_pred             EEEECCCCcce--eEEeCCCCCEEEEEEeCCCCEEEEEeCCCE---------EEEEECCCCcceeeccCCCCCCCcEEEE
Confidence            99999988743  334567778889999999999998776665         44444432211000     011123347


Q ss_pred             eeCcCC--CEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971          425 SFSPKG--DRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD  498 (721)
Q Consensus       425 ~~SpDG--~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~  498 (721)
                      +|+|++  ..|+..+ ++.|.+||+.+++.....   .+.+..++|+|||+.|+..+       .++.++||++....  
T Consensus       524 ~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~-------~Dg~i~iwd~~~~~--  594 (694)
T 3dm0_A          524 RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-------KDGVVLLWDLAEGK--  594 (694)
T ss_dssp             EECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSBCEEEETTTTE--
T ss_pred             EEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe-------CCCeEEEEECCCCc--
Confidence            899987  3566654 789999999988765443   45688999999999999886       57899999875432  


Q ss_pred             CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC-------------------CcC
Q 004971          499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-------------------PWS  559 (721)
Q Consensus       499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~-------------------~~~  559 (721)
                         ....+. ....+..++|+||+..|+...    +..|++||+.+++.  +..+...                   ...
T Consensus       595 ---~~~~~~-~~~~v~~~~~sp~~~~l~~~~----~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (694)
T 3dm0_A          595 ---KLYSLE-ANSVIHALCFSPNRYWLCAAT----EHGIKIWDLESKSI--VEDLKVDLKAEAEKADNSGPAATKRKVIY  664 (694)
T ss_dssp             ---EEECCB-CSSCEEEEEECSSSSEEEEEE----TTEEEEEETTTTEE--EEEECCCCC----------------CCCC
T ss_pred             ---eEEEec-CCCcEEEEEEcCCCcEEEEEc----CCCEEEEECCCCCC--hhhhccccccccccccccccccCCceeEE
Confidence               233332 234567789999999888765    45699999998764  3322211                   112


Q ss_pred             ceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971          560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN  594 (721)
Q Consensus       560 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~  594 (721)
                      +..++|||||++|+.++.++       .|++|++.
T Consensus       665 ~~~l~~spdg~~l~sgs~Dg-------~i~iW~i~  692 (694)
T 3dm0_A          665 CTSLNWSADGSTLFSGYTDG-------VIRVWGIG  692 (694)
T ss_dssp             EEEEEECTTSSEEEEEETTS-------EEEEEEC-
T ss_pred             eeeEEEcCCCCEEEEEcCCC-------eEEEEecc
Confidence            46789999999999999886       89999974

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.71  E-value=1.1e-15  Score=165.34  Aligned_cols=279  Identities=9%  Similarity=0.025  Sum_probs=180.7

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcc--eeccccceEEeCCCC------------CcccCceeecCCC--CE
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGL--VSTESVSIQRVTPPG------------LHAFTPATSPGNN--KF  334 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~------------~~~~~~~~sp~dG--~~  334 (721)
                      ..+|+|||+++++  ...++.+.+|.+.......  ..........+..+.            ..+..++|+| ++  ..
T Consensus        33 ~v~~s~~g~~la~--g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~-~~~~~~  109 (447)
T 3dw8_B           33 TVEFNHSGELLAT--GDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP-QKNAAQ  109 (447)
T ss_dssp             EEEECSSSSEEEE--EETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC-CCSSSE
T ss_pred             EEEECCCCCEEEE--EcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC-CCCcce
Confidence            3489999987664  3347899999765432100  000000123344454            5578899999 98  67


Q ss_pred             EEEEEecCCCCeeeEEEEECCCCceEEe--------------------------------------ecccCCCCcccCcE
Q 004971          335 IAVATRRPTSSYRHIELFDLVKNKFIEL--------------------------------------TRFVSPKTHHLNPF  376 (721)
Q Consensus       335 la~~~~~~g~~~~~l~l~dl~tg~~~~l--------------------------------------~~~~~~~~~~~~~~  376 (721)
                      ++...     .+..|++||+.+++....                                      .....+...+..++
T Consensus       110 l~s~s-----~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          110 FLLST-----NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             EEEEE-----CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             EEEeC-----CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            77653     345599999876543100                                      11234566788899


Q ss_pred             EcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc----------ceecccCCCCceeCcCC-CEEEEEe-CCcEEEE
Q 004971          377 ISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD----------ISLFRFDGSFPSFSPKG-DRIAFVE-FPGVYVV  444 (721)
Q Consensus       377 ~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~~~~~~~~~~~~SpDG-~~la~~~-~~~l~v~  444 (721)
                      |+|+|+.|+.. .++         .+.++++......          +.........++|+|+| +.|+..+ ++.|.+|
T Consensus       185 ~~~~~~~l~s~-~d~---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  254 (447)
T 3dw8_B          185 INSDYETYLSA-DDL---------RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC  254 (447)
T ss_dssp             ECTTSSEEEEE-CSS---------EEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             EcCCCCEEEEe-CCC---------eEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence            99999998875 322         3566665522111          11122234467999999 8888875 7889999


Q ss_pred             ECCCCce-----EEEe--ec------------CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE
Q 004971          445 NSDGSNR-----RQVY--FK------------NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR  505 (721)
Q Consensus       445 d~~~g~~-----~~l~--~~------------~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  505 (721)
                      |+.+++.     ..+.  ..            .+..+.|+|+|++|+..+       . +.+.||++...+.    ....
T Consensus       255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~-~~v~iwd~~~~~~----~~~~  322 (447)
T 3dw8_B          255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-------Y-LSVKVWDLNMENR----PVET  322 (447)
T ss_dssp             ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-------S-SEEEEEETTCCSS----CSCC
T ss_pred             ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-------C-CeEEEEeCCCCcc----ccce
Confidence            9988774     4443  22            688999999999999876       4 7889998865332    3333


Q ss_pred             cccCCCC---------------CcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc----------------
Q 004971          506 LTTNGKN---------------NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT----------------  554 (721)
Q Consensus       506 l~~~~~~---------------~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~----------------  554 (721)
                      +..+...               ...++|+|||++|+..+.   +..|++||+.+++.   ..+.                
T Consensus       323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~---dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~  396 (447)
T 3dw8_B          323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY---NNFFRMFDRNTKRD---ITLEASRENNKPRTVLKPRK  396 (447)
T ss_dssp             EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS---TTEEEEEETTTCCE---EEEECCSTTCCTTCBCCCCC
T ss_pred             eeccccccccccccccccccccceEEEECCCCCEEEEecc---CCEEEEEEcCCCcc---eeeeecccccccccccCCcc
Confidence            4333311               123899999999988776   78999999998873   2211                


Q ss_pred             -----------------CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971          555 -----------------EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       555 -----------------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                                       .....+..++|+|+|+.|+++..+        .+|+|..
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~--------~~~~~~~  444 (447)
T 3dw8_B          397 VCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTN--------NLYIFQD  444 (447)
T ss_dssp             EECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSS--------CEEEEEC
T ss_pred             ccccCCcccccccccccccCCceeEEEECCCCCEEEEEecc--------eeeeecc
Confidence                             111235679999999999988876        5888864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.71  E-value=1.7e-15  Score=162.74  Aligned_cols=273  Identities=17%  Similarity=0.159  Sum_probs=186.6

Q ss_pred             ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEE---eCCCCCcccCceeecCCCCEEEEEEecCCCCeee
Q 004971          272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQR---VTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRH  348 (721)
Q Consensus       272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~  348 (721)
                      ..||+++-+..   .. ++.+.||.+..   +       +..+   +..+...+..++|+| ||++|+...     .+..
T Consensus       111 l~wS~~n~lAv---gl-d~tV~lWd~~t---g-------~~~~~~~~~~~~~~V~sv~fsp-dg~~lasgs-----~Dg~  170 (420)
T 4gga_A          111 VDWSSGNVLAV---AL-DNSVYLWSASS---G-------DILQLLQMEQPGEYISSVAWIK-EGNYLAVGT-----SSAE  170 (420)
T ss_dssp             EEECTTSEEEE---EE-TTEEEEEETTT---C-------CEEEEEECCSTTCCEEEEEECT-TSSEEEEEE-----TTSC
T ss_pred             EEECCCCEEEE---Ee-CCEEEEEECCC---C-------CEEEEEEecCCCCcEEEEEECC-CCCEEEEEE-----CCCe
Confidence            48998754433   22 67888885432   1       2222   234455678999999 999998854     3456


Q ss_pred             EEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec---ccCCCCce
Q 004971          349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF---RFDGSFPS  425 (721)
Q Consensus       349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~  425 (721)
                      |.+||+.+++.  +.....+...+..  ++.++..|+....+..         +.+++.......+...   ........
T Consensus       171 v~iWd~~~~~~--~~~~~~h~~~v~~--~s~~~~~l~sgs~d~~---------i~~~d~~~~~~~~~~~~~h~~~~~~~~  237 (420)
T 4gga_A          171 VQLWDVQQQKR--LRNMTSHSARVGS--LSWNSYILSSGSRSGH---------IHHHDVRVAEHHVATLSGHSQEVCGLR  237 (420)
T ss_dssp             EEEEETTTTEE--EEEECCCSSCEEE--EEEETTEEEEEETTSE---------EEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred             EEEEEcCCCcE--EEEEeCCCCceEE--EeeCCCEEEEEeCCCc---------eeEeeecccceeeEEecccccceeeee
Confidence            99999999874  3334445555544  4556777776554333         4555544433222221   22234468


Q ss_pred             eCcCCCEEEEEe-CCcEEEEECCCCce-----EEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971          426 FSPKGDRIAFVE-FPGVYVVNSDGSNR-----RQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV  497 (721)
Q Consensus       426 ~SpDG~~la~~~-~~~l~v~d~~~g~~-----~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~  497 (721)
                      |+|+|+.++... ++.+.+|+...++.     ....  ...+..++|+|++..++++..+    ..++.++||++.... 
T Consensus       238 ~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g----s~D~~I~iwd~~t~~-  312 (420)
T 4gga_A          238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG----TSDRHIRIWNVCSGA-  312 (420)
T ss_dssp             ECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC----TTTCEEEEEETTTTE-
T ss_pred             ecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee----cCCCEEEEEeCCccc-
Confidence            999999998885 78899999987652     1222  4567889999988877765422    356889998765432 


Q ss_pred             CCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971          498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       498 ~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~  577 (721)
                          ....+..+ ..+....|+|+++.|++.+.. .+..|++||..+++.  +..+..+...+..++|||||++|+.++.
T Consensus       313 ----~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~-~d~~I~iwd~~~~~~--v~~l~gH~~~V~~l~~spdg~~l~S~s~  384 (420)
T 4gga_A          313 ----CLSAVDAH-SQVCSILWSPHYKELISGHGF-AQNQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAAA  384 (420)
T ss_dssp             ----EEEEEECS-SCEEEEEEETTTTEEEEEECT-TTCCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             ----cceeeccc-cceeeeeecCCCCeEEEEEec-CCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence                33333333 467778999999999987631 256899999998886  7778878888899999999999999998


Q ss_pred             cCCCCCCceeEEEEecCCCc
Q 004971          578 RDNPGSGSFEMYLIHPNGTG  597 (721)
Q Consensus       578 ~~~~~~~~~~i~~~d~~~~~  597 (721)
                      ++       .|.+||+....
T Consensus       385 D~-------tvriWdv~~~~  397 (420)
T 4gga_A          385 DE-------TLRLWRCFELD  397 (420)
T ss_dssp             TT-------EEEEECCSCSS
T ss_pred             CC-------eEEEEECCCCC
Confidence            86       89999986643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.71  E-value=4e-16  Score=162.30  Aligned_cols=271  Identities=8%  Similarity=0.015  Sum_probs=188.7

Q ss_pred             CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCc-eEEeecccCCCCcccCcEEcCCCC-EEEEEEeeCCCC
Q 004971          317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNK-FIELTRFVSPKTHHLNPFISPDSS-RVGYHKCRGGST  394 (721)
Q Consensus       317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~-~~~l~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~  394 (721)
                      .+...+..++|+| +|++|+...     .+..|++||+.+++ ...+.....+...+..++|+|+++ .|+....++.  
T Consensus         9 ~h~~~v~~~~~s~-~~~~l~~~~-----~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--   80 (342)
T 1yfq_A            9 APKDYISDIKIIP-SKSLLLITS-----WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE--   80 (342)
T ss_dssp             CCSSCEEEEEEEG-GGTEEEEEE-----TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC--
T ss_pred             CCCCcEEEEEEcC-CCCEEEEEc-----CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCe--
Confidence            3455678899999 999988854     34569999998876 111122234567788899999999 8887665444  


Q ss_pred             CCCCcceeEEEec-cCCCC-ccee--cccCCCCceeCcCCCEEEEEe-CCcEEEEECCC---------CceE-EEe-ecC
Q 004971          395 REDGNNQLLLENI-KSPLP-DISL--FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDG---------SNRR-QVY-FKN  458 (721)
Q Consensus       395 ~~~~~~~l~~~~~-~~~~~-~~~~--~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~---------g~~~-~l~-~~~  458 (721)
                             +.++++ ..... .+..  .......++|+| ++.|+..+ ++.|.+||+.+         ++.. .+. ...
T Consensus        81 -------i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  152 (342)
T 1yfq_A           81 -------ILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK  152 (342)
T ss_dssp             -------EEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred             -------EEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCc
Confidence                   666776 54422 1111  222334578999 88888875 78899999875         4322 122 556


Q ss_pred             ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc-cCCCCccceEEcccCCCCCcceEEcc-CCCEEEEEEeeCCcee
Q 004971          459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV-DDVDGVSAVRRLTTNGKNNAFPSVSP-DGKWIVFRSTRTGYKN  536 (721)
Q Consensus       459 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~Sp-Dg~~l~~~s~~~g~~~  536 (721)
                      +..+.|+|++  ++..+       .++.+.+|++.. ...   ........+...+..++|+| |+++|++.+.   +..
T Consensus       153 v~~~~~~~~~--l~~~~-------~d~~i~i~d~~~~~~~---~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~---dg~  217 (342)
T 1yfq_A          153 IFTMDTNSSR--LIVGM-------NNSQVQWFRLPLCEDD---NGTIEESGLKYQIRDVALLPKEQEGYACSSI---DGR  217 (342)
T ss_dssp             EEEEEECSSE--EEEEE-------STTEEEEEESSCCTTC---CCEEEECSCSSCEEEEEECSGGGCEEEEEET---TSE
T ss_pred             eEEEEecCCc--EEEEe-------CCCeEEEEECCccccc---cceeeecCCCCceeEEEECCCCCCEEEEEec---CCc
Confidence            7889999998  66654       467888888765 221   11223333445677899999 9999998887   678


Q ss_pred             EEEEECCCC------cccceEECcCCC---------cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEe
Q 004971          537 LYIMDAEGG------EGYGLHRLTEGP---------WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL  601 (721)
Q Consensus       537 l~~~d~~~g------~~~~~~~l~~~~---------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l  601 (721)
                      |.+|+.+.+      +.  ...+..+.         ..+..++|+|||++|+.+..++       .|++||+.+++....
T Consensus       218 i~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-------~i~vwd~~~~~~~~~  288 (342)
T 1yfq_A          218 VAVEFFDDQGDDYNSSK--RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG-------IISCWNLQTRKKIKN  288 (342)
T ss_dssp             EEEEECCTTCCSTTCTT--CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS-------CEEEEETTTTEEEEE
T ss_pred             EEEEEEcCCCccccccc--ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc-------eEEEEcCccHhHhhh
Confidence            899888765      32  33444332         2678899999999999888775       899999998876554


Q ss_pred             eecCC-CCCcCCeEECCCCCEEEEEEecCC
Q 004971          602 IQSGS-AGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       602 ~~~~~-~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      ... + ...+..++  |||++|+..+.++.
T Consensus       289 ~~~-~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          289 FAK-FNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             CCC-CSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             hhc-ccCCCceEec--CCCCeEEEEecCCc
Confidence            432 4 56666777  99999999888875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.71  E-value=1.1e-16  Score=169.39  Aligned_cols=228  Identities=10%  Similarity=0.062  Sum_probs=156.0

Q ss_pred             CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC----CCcceecccCCCCceeCcCCCEEEEEe-CCcEEE
Q 004971          369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP----LPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYV  443 (721)
Q Consensus       369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v  443 (721)
                      ...+..++|+|||+.|++...++.         +.++++...    ...+.........++|+|||++|+..+ ++.|.+
T Consensus        11 ~~~v~~~~~s~~g~~l~~~~~d~~---------i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v   81 (377)
T 3dwl_C           11 PKPSYEHAFNSQRTEFVTTTATNQ---------VELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYV   81 (377)
T ss_dssp             SSCCSCCEECSSSSEEECCCSSSC---------BCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred             CCcEEEEEECCCCCEEEEecCCCE---------EEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            446778999999999987655544         334444332    222222233345679999999998885 789999


Q ss_pred             EECCCCc----eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-CCCCCcce
Q 004971          444 VNSDGSN----RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFP  516 (721)
Q Consensus       444 ~d~~~g~----~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~  516 (721)
                      ||+.+++    ...+.  ...+..+.|+||++.|+..+       .++.+.+|++.....  ......+.. +...+..+
T Consensus        82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~--~~~~~~~~~~h~~~v~~~  152 (377)
T 3dwl_C           82 YEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGS-------GARVISVCYFEQEND--WWVSKHLKRPLRSTILSL  152 (377)
T ss_dssp             C------CCCCEEECCCCSSCEEEEECCTTSSCCEEEE-------SSSCEEECCC-------CCCCEEECSSCCSCEEEE
T ss_pred             EEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEe-------cCCeEEEEEECCccc--ceeeeEeecccCCCeEEE
Confidence            9998876    22232  56788999999999999987       468899998876431  012455665 66778889


Q ss_pred             EEccCCCEEEEEEeeCCceeEEEEECCCCcc----------------cceEECcCCCcCceeeEEccCCCEEEEEEccCC
Q 004971          517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG----------------YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN  580 (721)
Q Consensus       517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~----------------~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~  580 (721)
                      +|+||+++|+..+.   +..|++||+..++.                ..+..+ .+...+..++|+|||++|+.++.++ 
T Consensus       153 ~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~-  227 (377)
T 3dwl_C          153 DWHPNNVLLAAGCA---DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDS-  227 (377)
T ss_dssp             EECTTSSEEEEEES---SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTT-
T ss_pred             EEcCCCCEEEEEeC---CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCC-
Confidence            99999999999887   67899999853320                113333 5556678999999999999998875 


Q ss_pred             CCCCceeEEEEecCCCce----EEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971          581 PGSGSFEMYLIHPNGTGL----RKLIQSGSAGRANHPYFSPDGKSIVFTS  626 (721)
Q Consensus       581 ~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~SpDG~~l~~~~  626 (721)
                            .|++||+.+++.    ..... .+...+..++|+|||++|+..+
T Consensus       228 ------~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~  270 (377)
T 3dwl_C          228 ------SVTIAYPSAPEQPPRALITVK-LSQLPLRSLLWANESAIVAAGY  270 (377)
T ss_dssp             ------EEC-CEECSTTSCEEECCCEE-CSSSCEEEEEEEETTEEEEEES
T ss_pred             ------cEEEEECCCCCCcceeeEeec-CCCCceEEEEEcCCCCEEEEEc
Confidence                  899999988865    22222 2666788999999999887654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.71  E-value=1.6e-15  Score=154.64  Aligned_cols=236  Identities=10%  Similarity=0.051  Sum_probs=165.0

Q ss_pred             cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC-Ccc---eecccCCCCceeCcC--CCEEEEEe-C
Q 004971          366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL-PDI---SLFRFDGSFPSFSPK--GDRIAFVE-F  438 (721)
Q Consensus       366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~~~~~~~SpD--G~~la~~~-~  438 (721)
                      ..|...+..++|+|||++|+..+.++.         +.++++.... ..+   .........++|+++  |+.|+..+ +
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s~D~~---------v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D   76 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCSSDKT---------IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   76 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSC---------EEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             cCCcCceEEEEECCCCCEEEEEeCCCE---------EEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC
Confidence            345667788999999999998776665         4455554321 111   112223345788864  88888875 7


Q ss_pred             CcEEEEECCCCce---EEEe--ecCceeeEEcCC--CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCC
Q 004971          439 PGVYVVNSDGSNR---RQVY--FKNAFSTVWDPV--REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK  511 (721)
Q Consensus       439 ~~l~v~d~~~g~~---~~l~--~~~~~~~~~spd--g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~  511 (721)
                      +.|.+||+.+++.   ..+.  ...+..+.|+|+  |+.|+..+       .++.+++|++.....   .....+..+..
T Consensus        77 ~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s-------~d~~v~~wd~~~~~~---~~~~~~~~h~~  146 (297)
T 2pm7_B           77 GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVAS-------SDGKVSVVEFKENGT---TSPIIIDAHAI  146 (297)
T ss_dssp             TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEE-------TTSEEEEEEBCSSSC---BCCEEEECCSS
T ss_pred             CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEE-------CCCcEEEEEecCCCc---eeeeeeecccC
Confidence            8999999987742   2222  456789999998  88888876       578999999865432   12344555666


Q ss_pred             CCcceEEccC-------------CCEEEEEEeeCCceeEEEEECCCCcc--cceEECcCCCcCceeeEEccCC---CEEE
Q 004971          512 NNAFPSVSPD-------------GKWIVFRSTRTGYKNLYIMDAEGGEG--YGLHRLTEGPWSDTMCNWSPDG---EWIA  573 (721)
Q Consensus       512 ~~~~~~~SpD-------------g~~l~~~s~~~g~~~l~~~d~~~g~~--~~~~~l~~~~~~~~~~~~SpDG---~~l~  573 (721)
                      .+..++|+|+             +++|+..+.   +..|++||+.+++.  .....+..+...+..++|+|++   ++|+
T Consensus       147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~---D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la  223 (297)
T 2pm7_B          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGA---DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA  223 (297)
T ss_dssp             CEEEEEECCCC------------CCEEEEEET---TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred             ccceEeecCCcccccccCCCCCCcceEEEEcC---CCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence            7788999997             578888776   77899999877652  1134566677778999999995   7788


Q ss_pred             EEEccCCCCCCceeEEEEecCCCc---eEEeee-cCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          574 FASDRDNPGSGSFEMYLIHPNGTG---LRKLIQ-SGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       574 ~~~~~~~~~~~~~~i~~~d~~~~~---~~~l~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      .++.+.       .|.+||+.++.   ...+.. ..+...+..++|+|||++|+..+.++.
T Consensus       224 s~s~D~-------~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~  277 (297)
T 2pm7_B          224 SVSQDR-------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK  277 (297)
T ss_dssp             EEETTS-------CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSC
T ss_pred             EEECCC-------cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCc
Confidence            888775       79999987643   122221 224556778999999999998877653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.71  E-value=2e-15  Score=160.97  Aligned_cols=294  Identities=12%  Similarity=0.036  Sum_probs=190.1

Q ss_pred             eEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc-----------cCCCCcccCcEEcC-
Q 004971          312 IQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF-----------VSPKTHHLNPFISP-  379 (721)
Q Consensus       312 ~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~-----------~~~~~~~~~~~~Sp-  379 (721)
                      ...+..+...+..++|+|.+|++|+...     .++.|.+||+.+++.......           ..+...+..++|+| 
T Consensus        36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  110 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEPVEGRYMLSGG-----SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH  110 (408)
T ss_dssp             EEECCCCSSCEEEEEECTTTCCEEEEEE-----TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT
T ss_pred             eeeeeccCCcEEEEEEecCCCCEEEEEc-----CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC
Confidence            3344456667788999985677777754     334599999998753222110           12566788899999 


Q ss_pred             CCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc-ceecccCCCCceeCc---CCCEEEEE-eCCcEEEEECCCCceE-E
Q 004971          380 DSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSP---KGDRIAFV-EFPGVYVVNSDGSNRR-Q  453 (721)
Q Consensus       380 dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~Sp---DG~~la~~-~~~~l~v~d~~~g~~~-~  453 (721)
                      +++.|+....++         .+.++++...... ..........+.++|   ++..++.. .++.|.+||+.+++.. .
T Consensus       111 ~~~~l~s~~~d~---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  181 (408)
T 4a11_B          111 DTGMFTSSSFDK---------TLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI  181 (408)
T ss_dssp             CTTCEEEEETTS---------EEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE
T ss_pred             CCcEEEEEeCCC---------eEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee
Confidence            666776654443         3566666554211 111122223456666   45577777 4789999999887643 3


Q ss_pred             Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc---------------ccCCCCCcce
Q 004971          454 VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL---------------TTNGKNNAFP  516 (721)
Q Consensus       454 l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l---------------~~~~~~~~~~  516 (721)
                      +.  ...+..+.|+|++++++++.      ..++.+.+|++.....    ....+               ..+...+..+
T Consensus       182 ~~~~~~~v~~~~~~~~~~~ll~~~------~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  251 (408)
T 4a11_B          182 LQGHRQEILAVSWSPRYDYILATA------SADSRVKLWDVRRASG----CLITLDQHNGKKSQAVESANTAHNGKVNGL  251 (408)
T ss_dssp             ECCCCSCEEEEEECSSCTTEEEEE------ETTSCEEEEETTCSSC----CSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred             ecCCCCcEEEEEECCCCCcEEEEE------cCCCcEEEEECCCCCc----ccccccccccccceeeccccccccCceeEE
Confidence            33  56788999999999744443      2578899998865432    22333               2334566778


Q ss_pred             EEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC----CcCceeeEE-ccCCCEEEEEEccCCCCCCceeEEEE
Q 004971          517 SVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG----PWSDTMCNW-SPDGEWIAFASDRDNPGSGSFEMYLI  591 (721)
Q Consensus       517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~----~~~~~~~~~-SpDG~~l~~~~~~~~~~~~~~~i~~~  591 (721)
                      +|+|||++|+..+.   +..|++||+.+++.  ...+...    ........+ ...+..+++...++       .|++|
T Consensus       252 ~~~~~~~~l~~~~~---dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~v~  319 (408)
T 4a11_B          252 CFTSDGLHLLTVGT---DNRMRLWNSSNGEN--TLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS-------TIAVY  319 (408)
T ss_dssp             EECTTSSEEEEEET---TSCEEEEETTTCCB--CCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT-------EEEEE
T ss_pred             EEcCCCCEEEEecC---CCeEEEEECCCCcc--ceeccccccccccccceeEEecCCCceEEEEecCC-------EEEEE
Confidence            99999999998887   77899999998874  2222111    111112222 23344566666554       89999


Q ss_pred             ecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971          592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK  659 (721)
Q Consensus       592 d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  659 (721)
                      |+.+++....... +...+..++|+|||++|+..+.++                 .|++||+++++..
T Consensus       320 d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg-----------------~i~iw~~~~~~~~  369 (408)
T 4a11_B          320 TVYSGEQITMLKG-HYKTVDCCVFQSNFQELYSGSRDC-----------------NILAWVPSLYEPV  369 (408)
T ss_dssp             ETTTCCEEEEECC-CSSCEEEEEEETTTTEEEEEETTS-----------------CEEEEEECC----
T ss_pred             ECcCCcceeeecc-CCCeEEEEEEcCCCCEEEEECCCC-----------------eEEEEeCCCCCcc
Confidence            9999887665543 677888999999999998877665                 3999999887543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.71  E-value=2.6e-15  Score=155.71  Aligned_cols=273  Identities=10%  Similarity=-0.008  Sum_probs=179.6

Q ss_pred             ccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc-cee-----cccCCCCceeCcCCCEEEEEe-
Q 004971          365 FVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-ISL-----FRFDGSFPSFSPKGDRIAFVE-  437 (721)
Q Consensus       365 ~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~-----~~~~~~~~~~SpDG~~la~~~-  437 (721)
                      +..|...+..++|+|+  .|+..+.++.         +.++++..+... +..     .......++|+|+|+.|+..+ 
T Consensus        10 ~~~h~~~v~~~~~s~~--~las~~~D~~---------i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~   78 (330)
T 2hes_X           10 LKLYKEKIWSFDFSQG--ILATGSTDRK---------IKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF   78 (330)
T ss_dssp             EECCSSCEEEEEEETT--EEEEEESSSC---------EEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET
T ss_pred             eccCCCceeeeccCCC--EEEEEcCCCE---------EEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC
Confidence            3456677788899987  6666555544         455555443111 111     112234579999999998885 


Q ss_pred             CCcEEEEECCCCc-------eE-EEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc
Q 004971          438 FPGVYVVNSDGSN-------RR-QVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT  507 (721)
Q Consensus       438 ~~~l~v~d~~~g~-------~~-~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~  507 (721)
                      ++.|.+|++....       .. .+.  ...+..++|+|+|++|+..+       .++.+.||++...+. .......+.
T Consensus        79 D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s-------~D~~v~iwd~~~~~~-~~~~~~~~~  150 (330)
T 2hes_X           79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS-------RDKSVWIWETDESGE-EYECISVLQ  150 (330)
T ss_dssp             TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEE-------TTSCEEEEECCTTCC-CCEEEEEEC
T ss_pred             CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe-------CCCEEEEEeccCCCC-CeEEEEEec
Confidence            7899999985421       11 222  45688999999999999887       578999999854321 011344566


Q ss_pred             cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccC--CCEEEEEEccCCCCCCc
Q 004971          508 TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPD--GEWIAFASDRDNPGSGS  585 (721)
Q Consensus       508 ~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~~  585 (721)
                      .+...+..++|+||++.|+..+.   +..|.+||..++....+..+..+...+..++|+|+  +..|+.++.+.      
T Consensus       151 ~h~~~v~~v~~~p~~~~l~s~s~---D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~------  221 (330)
T 2hes_X          151 EHSQDVKHVIWHPSEALLASSSY---DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS------  221 (330)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEET---TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS------
T ss_pred             cCCCceEEEEECCCCCEEEEEcC---CCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC------
Confidence            67677888999999999998887   77899999876642235666677777889999999  67888888775      


Q ss_pred             eeEEEEecCCCc--------eEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971          586 FEMYLIHPNGTG--------LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       586 ~~i~~~d~~~~~--------~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  657 (721)
                       .|.+||+.++.        ........+...+..++|++++ .|+..+.++                 .|.+|+..+++
T Consensus       222 -~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg-----------------~v~iw~~~~~~  282 (330)
T 2hes_X          222 -TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG-----------------VLAVYEEVDGE  282 (330)
T ss_dssp             -CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS-----------------CEEEEEEETTE
T ss_pred             -eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC-----------------EEEEEEcCCCc
Confidence             79999886541        1111111255678889999776 566666554                 38889987764


Q ss_pred             eEE----eccCCC-CCCCceecC--C--cCCccccc
Q 004971          658 LKR----LTQNSF-EDGTPAWGP--R--FIRPVDVE  684 (721)
Q Consensus       658 ~~~----lt~~~~-~~~~~~~sp--~--~l~~~~~~  684 (721)
                      .+.    +..|.. .+...+|+|  +  +|+.+..|
T Consensus       283 ~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~D  318 (330)
T 2hes_X          283 WKVFAKRALCHGVYEINVVKWLELNGKTILATGGDD  318 (330)
T ss_dssp             EEEEEEESCTTTTSCEEEEEEC-----CCEEEEETT
T ss_pred             eEEEeccccccccceEEEEEEecCCCceEEEEecCC
Confidence            322    233443 556778988  2  45655543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.70  E-value=9.5e-16  Score=161.70  Aligned_cols=244  Identities=10%  Similarity=0.069  Sum_probs=174.8

Q ss_pred             cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC----cceecccCCCCceeCcC--CCEEEEEe-C
Q 004971          366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP----DISLFRFDGSFPSFSPK--GDRIAFVE-F  438 (721)
Q Consensus       366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~SpD--G~~la~~~-~  438 (721)
                      ..|...+..++|+|||+.|+....++.         +.++++.....    .+.........++|+++  ++.|+..+ +
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~---------i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d   78 (379)
T 3jrp_A            8 NAHNELIHDAVLDYYGKRLATCSSDKT---------IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   78 (379)
T ss_dssp             EECCCCEEEEEECSSSSEEEEEETTSC---------EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             cCCcccEEEEEEcCCCCEEEEEECCCc---------EEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence            446777888999999999998766554         44444432211    11112223345789877  88888885 7


Q ss_pred             CcEEEEECCCCceEEEe-----ecCceeeEEcCC--CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCC
Q 004971          439 PGVYVVNSDGSNRRQVY-----FKNAFSTVWDPV--REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK  511 (721)
Q Consensus       439 ~~l~v~d~~~g~~~~l~-----~~~~~~~~~spd--g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~  511 (721)
                      +.|.+||+.+++...+.     ...+..+.|+|+  ++.|+..+       .++.+.+|++.....   .....+..+..
T Consensus        79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-------~d~~i~v~d~~~~~~---~~~~~~~~~~~  148 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS-------SDGKVSVVEFKENGT---TSPIIIDAHAI  148 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-------TTSEEEEEECCTTSC---CCEEEEECCTT
T ss_pred             CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEec-------CCCcEEEEecCCCCc---eeeEEecCCCC
Confidence            88999999988633222     457889999999  99999886       578999999876532   13344555666


Q ss_pred             CCcceEEcc-------------CCCEEEEEEeeCCceeEEEEECCCCccc--ceEECcCCCcCceeeEEccC---CCEEE
Q 004971          512 NNAFPSVSP-------------DGKWIVFRSTRTGYKNLYIMDAEGGEGY--GLHRLTEGPWSDTMCNWSPD---GEWIA  573 (721)
Q Consensus       512 ~~~~~~~Sp-------------Dg~~l~~~s~~~g~~~l~~~d~~~g~~~--~~~~l~~~~~~~~~~~~SpD---G~~l~  573 (721)
                      .+..++|+|             |++.|++.+.   +..|++||+.++...  ....+..+...+..++|+||   ++.|+
T Consensus       149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~  225 (379)
T 3jrp_A          149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGA---DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA  225 (379)
T ss_dssp             CEEEEEECCCC----------CTTCEEEEEET---TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred             ceEEEEEcCccccccccccCCCCCCEEEEEeC---CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEE
Confidence            788899999             7999998887   678999999866531  13345556667889999999   88888


Q ss_pred             EEEccCCCCCCceeEEEEecCCCc---eEEee-ecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEE
Q 004971          574 FASDRDNPGSGSFEMYLIHPNGTG---LRKLI-QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF  649 (721)
Q Consensus       574 ~~~~~~~~~~~~~~i~~~d~~~~~---~~~l~-~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  649 (721)
                      .++.++       .|++||+.+++   ...+. ...+...+..++|+|||++|+..+.++                 .|+
T Consensus       226 s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-----------------~i~  281 (379)
T 3jrp_A          226 SVSQDR-------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN-----------------KVT  281 (379)
T ss_dssp             EEETTS-------CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS-----------------SEE
T ss_pred             EEeCCC-------EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC-----------------cEE
Confidence            888775       79999998864   22222 112455677899999999999887754                 388


Q ss_pred             EEEcCC
Q 004971          650 KIKLDG  655 (721)
Q Consensus       650 ~~d~~~  655 (721)
                      +|++..
T Consensus       282 iw~~~~  287 (379)
T 3jrp_A          282 LWKENL  287 (379)
T ss_dssp             EEEEEE
T ss_pred             EEeCCC
Confidence            888764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.69  E-value=2.7e-16  Score=168.55  Aligned_cols=243  Identities=12%  Similarity=-0.003  Sum_probs=165.6

Q ss_pred             CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCC
Q 004971          369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDG  448 (721)
Q Consensus       369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~  448 (721)
                      ...+..++|||||+.++.++.+..         +.  +...+ ..+.........++|||||      ..+.+.+++.++
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~T---------V~--d~~~~-~~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~~   76 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDIS---------IG--QPKYA-KDINCNSKNLFHVKEFPLE------FENKLDFELAQQ   76 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEE---------EE--EECCC-SCCSSBGGGTEEEEEECCC------CCCTTTTSCCCS
T ss_pred             hccEEEEEECCCCCEEEEEcCCce---------ee--ccccc-ceecCCCccEEEEEECCCC------CcceEEEEeCCC
Confidence            456778999999999998654443         11  32222 1223334445668999999      122222222222


Q ss_pred             CceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCC-----CCcceEEccCC
Q 004971          449 SNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK-----NNAFPSVSPDG  522 (721)
Q Consensus       449 g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~SpDg  522 (721)
                      .....+. ...+..++|||||++||..+       .++.+.||+..       .....+. +..     .+..++|||||
T Consensus        77 ~~~~~~~~~~~V~~vawSPdG~~LAs~s-------~dg~V~iwd~~-------~~l~~l~-~~~~~~~~sv~svafSPDG  141 (588)
T 2j04_A           77 NGLLNSQPVCYPRVCKPSPIDDWMAVLS-------NNGNVSVFKDN-------KMLTNLD-SKGNLSSRTYHCFEWNPIE  141 (588)
T ss_dssp             SCSSTTSCSCCEEEEEECSSSSCEEEEE-------TTSCEEEEETT-------EEEEECC-CSSCSTTTCEEEEEECSSS
T ss_pred             ceEeecCCCCcEEEEEECCCCCEEEEEe-------CCCcEEEEeCC-------ceeeecc-CCCccccccEEEEEEcCCC
Confidence            2211111 46788999999999999987       57889999721       1444444 332     36789999999


Q ss_pred             CEEEEEEeeCCceeEEEEECCCCccc-----ceEEC----cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971          523 KWIVFRSTRTGYKNLYIMDAEGGEGY-----GLHRL----TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       523 ~~l~~~s~~~g~~~l~~~d~~~g~~~-----~~~~l----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                      ++|+.++.   +..|.+||+.++...     .+..+    ..+...+..++|||||  |+.++.+.       .+++||+
T Consensus       142 ~~LAsgs~---DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~-------tVrlWd~  209 (588)
T 2j04_A          142 SSIVVGNE---DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNN-------SVFSMTV  209 (588)
T ss_dssp             SCEEEEET---TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTC-------CEEEECC
T ss_pred             CEEEEEcC---CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCC-------eEEEEEC
Confidence            99999998   889999999987521     12444    3334568899999999  66666664       8999999


Q ss_pred             CCCceE---EeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEec-cCCCCCC
Q 004971          594 NGTGLR---KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT-QNSFEDG  669 (721)
Q Consensus       594 ~~~~~~---~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt-~~~~~~~  669 (721)
                      ++++..   +....++...+..++|+  |+.|+.++ ++                 .|.+||+++++...+. +|.....
T Consensus       210 ~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~-----------------tIkLWd~~~~~~~~~~~gh~~~V~  269 (588)
T 2j04_A          210 SASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PG-----------------YVHKIDLKNYSISSLKTGSLENFH  269 (588)
T ss_dssp             CSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SS-----------------EEEEEETTTTEEEEEECSCCSCCC
T ss_pred             CCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CC-----------------eEEEEECCCCeEEEEEcCCCceEE
Confidence            888742   12222366789999999  68888765 32                 4999999998884444 7777788


Q ss_pred             Ccee--cCC
Q 004971          670 TPAW--GPR  676 (721)
Q Consensus       670 ~~~~--sp~  676 (721)
                      ...|  +|+
T Consensus       270 ~va~~~s~d  278 (588)
T 2j04_A          270 IIPLNHEKE  278 (588)
T ss_dssp             EEEETTCSS
T ss_pred             EEEeeeCCC
Confidence            8899  887

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.69  E-value=2.4e-15  Score=160.61  Aligned_cols=259  Identities=13%  Similarity=0.103  Sum_probs=178.3

Q ss_pred             CcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC------CCcceecccCCCCceeCc-CCCEEEEEe-CCcEEEEE
Q 004971          374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP------LPDISLFRFDGSFPSFSP-KGDRIAFVE-FPGVYVVN  445 (721)
Q Consensus       374 ~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~Sp-DG~~la~~~-~~~l~v~d  445 (721)
                      .++++|+...+++....+        ..+.++++...      ...+.........++|+| +++.|+..+ ++.|.+|+
T Consensus        39 ~~~~~~~~~~~~~~~~~~--------g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~  110 (402)
T 2aq5_A           39 FCAVNPKFMALICEASGG--------GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE  110 (402)
T ss_dssp             SEEECSSEEEEEBCCSSS--------CCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred             cEEECCCeEEEEEEEcCC--------CEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence            466776655444322222        23666665332      111222233345679999 899888885 77899999


Q ss_pred             CCCCc--------eEEEe--ecCceeeEEcCCCC-eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc--ccCCCC
Q 004971          446 SDGSN--------RRQVY--FKNAFSTVWDPVRE-AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL--TTNGKN  512 (721)
Q Consensus       446 ~~~g~--------~~~l~--~~~~~~~~~spdg~-~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l--~~~~~~  512 (721)
                      +.++.        ...+.  ...+..+.|+|+++ .|+..+       .++.+.||++....     ....+  ..+...
T Consensus       111 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~-------~dg~i~iwd~~~~~-----~~~~~~~~~~~~~  178 (402)
T 2aq5_A          111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG-------CDNVILVWDVGTGA-----AVLTLGPDVHPDT  178 (402)
T ss_dssp             CCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE-------TTSCEEEEETTTTE-----EEEEECTTTCCSC
T ss_pred             ccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc-------CCCEEEEEECCCCC-----ccEEEecCCCCCc
Confidence            98762        23333  55788999999995 666554       57889999876432     45556  556677


Q ss_pred             CcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC-cCCCcC-ceeeEEccCCCEEEEEEccCCCCCCceeEEE
Q 004971          513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL-TEGPWS-DTMCNWSPDGEWIAFASDRDNPGSGSFEMYL  590 (721)
Q Consensus       513 ~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l-~~~~~~-~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~  590 (721)
                      +..++|+|||++|+..+.   +..|++||+.+++.  +..+ ..+... +..+.|+|||+.|+.+....    ....|++
T Consensus       179 v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~----~d~~i~i  249 (402)
T 2aq5_A          179 IYSVDWSRDGALICTSCR---DKRVRVIEPRKGTV--VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM----SERQVAL  249 (402)
T ss_dssp             EEEEEECTTSSCEEEEET---TSEEEEEETTTTEE--EEEEECSSCSSSCCEEEECSTTEEEEEEECTT----CCEEEEE
T ss_pred             eEEEEECCCCCEEEEEec---CCcEEEEeCCCCce--eeeeccCCCCCcceEEEEcCCCcEEEEeccCC----CCceEEE
Confidence            888999999999999886   78999999998874  4444 333332 57899999999888774221    2358999


Q ss_pred             EecCCCce-EEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC--eEEeccC--C
Q 004971          591 IHPNGTGL-RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD--LKRLTQN--S  665 (721)
Q Consensus       591 ~d~~~~~~-~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~lt~~--~  665 (721)
                      ||+.+++. .......+...+..++|+|||++|++++..++                .|++||+.+++  ...+..+  .
T Consensus       250 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg----------------~i~i~d~~~~~~~~~~l~~~~~~  313 (402)
T 2aq5_A          250 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS----------------SIRYFEITSEAPFLHYLSMFSSK  313 (402)
T ss_dssp             EETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS----------------CEEEEEECSSTTCEEEEEEECCS
T ss_pred             EcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC----------------eEEEEEecCCCcceEeecccccC
Confidence            99988653 22222225566888999999999988775443                49999998877  5566553  3


Q ss_pred             CCCCCceecCCc
Q 004971          666 FEDGTPAWGPRF  677 (721)
Q Consensus       666 ~~~~~~~~sp~~  677 (721)
                      ..+...+|+|+.
T Consensus       314 ~~v~~~~~sp~~  325 (402)
T 2aq5_A          314 ESQRGMGYMPKR  325 (402)
T ss_dssp             SCCSEEEECCGG
T ss_pred             CcccceEEeccc
Confidence            667889999963

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.68  E-value=1.1e-14  Score=151.23  Aligned_cols=283  Identities=11%  Similarity=0.013  Sum_probs=186.7

Q ss_pred             EEEEECCCCceEEeecccCCCCcccCcEEcCC-CCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--c--ee---cccC
Q 004971          349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPD-SSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--I--SL---FRFD  420 (721)
Q Consensus       349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd-g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~--~~---~~~~  420 (721)
                      ++++...+.+......+.+|...+..++|+|+ ++.|+..+.++.         +.++++......  .  ..   ....
T Consensus        18 ~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~---------i~vWd~~~~~~~~~~~~~~l~~h~~~   88 (340)
T 4aow_A           18 LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKT---------IIMWKLTRDETNYGIPQRALRGHSHF   88 (340)
T ss_dssp             --------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSC---------EEEEEECCSSSCSEEEEEEECCCSSC
T ss_pred             EEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCe---------EEEEECCCCCcccceeeEEEeCCCCC
Confidence            44444444443333345678888999999998 567777666555         445555433211  1  11   1223


Q ss_pred             CCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          421 GSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      ...+.|+|||++|+..+ ++.|.+|+..........   ........++++++.|+..+       .++.+.+|++....
T Consensus        89 V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-------~d~~~~~~d~~~~~  161 (340)
T 4aow_A           89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS-------RDKTIKLWNTLGVC  161 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEE-------TTSCEEEECTTSCE
T ss_pred             EEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeec-------CCCeEEEEEeCCCc
Confidence            44578999999998885 778999999887654443   44566788999999999886       46788888654321


Q ss_pred             CCCccceEEcccCCCCCcceEEccCCCE--EEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEE
Q 004971          497 VDGVSAVRRLTTNGKNNAFPSVSPDGKW--IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF  574 (721)
Q Consensus       497 ~~~~~~~~~l~~~~~~~~~~~~SpDg~~--l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~  574 (721)
                          .....+..+...+...+|++++..  ++..+.   +..|++||+.+++.  +..+..+...+..++|+|||++|+.
T Consensus       162 ----~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~---d~~i~i~d~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s  232 (340)
T 4aow_A          162 ----KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW---DKLVKVWNLANCKL--KTNHIGHTGYLNTVTVSPDGSLCAS  232 (340)
T ss_dssp             ----EEEECSSSCSSCEEEEEECSCSSSCEEEEEET---TSCEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             ----eEEEEeccccCcccceEEccCCCCcEEEEEcC---CCEEEEEECCCCce--eeEecCCCCcEEEEEECCCCCEEEE
Confidence                011222333456667889888654  343443   66899999998875  5566666777889999999999999


Q ss_pred             EEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971          575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD  654 (721)
Q Consensus       575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  654 (721)
                      ++.++       .|.+||+.+++......  ....+..+.|+|++..++. +.+.                 .|++||++
T Consensus       233 ~s~Dg-------~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~-~~d~-----------------~i~iwd~~  285 (340)
T 4aow_A          233 GGKDG-------QAMLWDLNEGKHLYTLD--GGDIINALCFSPNRYWLCA-ATGP-----------------SIKIWDLE  285 (340)
T ss_dssp             EETTC-------EEEEEETTTTEEEEEEE--CSSCEEEEEECSSSSEEEE-EETT-----------------EEEEEETT
T ss_pred             EeCCC-------eEEEEEeccCceeeeec--CCceEEeeecCCCCceeec-cCCC-----------------EEEEEECC
Confidence            88875       89999999887665544  4456788999999876654 3333                 49999998


Q ss_pred             CCCeE-Eec---------cCCCCCCCceecCC--cCCcccc
Q 004971          655 GSDLK-RLT---------QNSFEDGTPAWGPR--FIRPVDV  683 (721)
Q Consensus       655 ~~~~~-~lt---------~~~~~~~~~~~sp~--~l~~~~~  683 (721)
                      ++... .+.         .+...+...+|+|+  +|+.+..
T Consensus       286 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~  326 (340)
T 4aow_A          286 GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT  326 (340)
T ss_dssp             TTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEET
T ss_pred             CCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeC
Confidence            87543 322         23444566788886  4555543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.68  E-value=1.4e-14  Score=146.32  Aligned_cols=272  Identities=11%  Similarity=0.125  Sum_probs=194.7

Q ss_pred             eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCC-----CCcc
Q 004971          326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRE-----DGNN  400 (721)
Q Consensus       326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~-----~~~~  400 (721)
                      -+++ +|++|+|....   +...|+.++.+....+++....       .--++++|++|+|+.........     ....
T Consensus        20 ~~~~-~g~~iy~~n~~---d~~~ly~~~~dg~~~~~l~~~~-------~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~   88 (302)
T 3s25_A           20 LFCE-SDGEVFFSNTN---DNGRLYAMNIDGSNIHKLSNDT-------AMYINADKNYVYYVRNNNQKITSQTFFSYDRN   88 (302)
T ss_dssp             CEEE-ETTEEEEEEGG---GTTEEEEEETTSCSCEEEEEEE-------EEEEEECSSEEEEEEECC------CCSSCCSE
T ss_pred             EEEE-eCCEEEEEeCC---CCceEEEEcCCCCCCEEccCCc-------eeeEEEcCCEEEEEECCCCcccccceeccCCC
Confidence            3667 99999997643   2356999999877777776421       24568999999998876521100     0015


Q ss_pred             eeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-----CCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEe
Q 004971          401 QLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-----FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTS  475 (721)
Q Consensus       401 ~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-----~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~  475 (721)
                      .|+..++.+...... ..  .....|+++|++|+|..     ...|+.+++++...++|.....  ..++|+|+.|+|+.
T Consensus        89 ~Iy~i~~dg~~~~~l-~~--~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~  163 (302)
T 3s25_A           89 SLCRIKRNGHGSTVL-DP--DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNN  163 (302)
T ss_dssp             EEEEEETTSCCCEEE-EC--SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSEEETTEEEEEC
T ss_pred             eEEEEeCCCCcceEe-ec--CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEe
Confidence            688888877643221 11  22247899999999985     4579999999988888885444  56789999999986


Q ss_pred             cCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC
Q 004971          476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE  555 (721)
Q Consensus       476 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~  555 (721)
                      .        +...|+.+++++.    ..++|....  ... .++|+|++|+|.....+ .+|++++++++.   ...|+.
T Consensus       164 ~--------g~~~Iy~~~l~g~----~~~~l~~~~--~~~-~~~P~g~~iy~t~~~~~-~~I~~~~ldG~~---~~~Lt~  224 (302)
T 3s25_A          164 P--------KNGQLYRYDTASQ----SEALFYDCN--CYK-PVVLDDTNVYYMDVNRD-NAIVHVNINNPN---PVVLTE  224 (302)
T ss_dssp             T--------TTCCEEEEETTTT----EEEEEECSC--EEE-EEEEETTEEEEEEGGGT-TEEEEECSSSCC---CEECSC
T ss_pred             C--------CCceEEEEECCCC----CEEEEeCCC--ccc-eeeecCCEEEEEEcCCC-cEEEEEECCCCC---eEEEeC
Confidence            2        5567899998875    556665432  222 36699999999886433 689999999887   566765


Q ss_pred             CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCC
Q 004971          556 GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP  635 (721)
Q Consensus       556 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~  635 (721)
                      ..    .+.|+|+|++|+|+....     ...|+.+++++...+++...    .  ...+++-+.+|+|+....+     
T Consensus       225 ~~----~~~~~~~g~~Iy~~~~~~-----~~~i~~~~~DG~~r~~l~~~----~--~~~i~i~~d~Iy~td~~~~-----  284 (302)
T 3s25_A          225 AN----IEHYNVYGSLIFYQRGGD-----NPALCVVKNDGTGFKELAKG----E--FCNINVTSQYVYFTDFVSN-----  284 (302)
T ss_dssp             SC----EEEEEEETTEEEEEECSS-----SCEEEEEETTSCCCEEEEES----C--EEEEEECSSEEEEEETTTC-----
T ss_pred             CC----cceEEECCCEEEEEECCC-----CcEEEEEECCCCccEEeeCC----c--cceEEEeCCEEEEEECCCC-----
Confidence            32    367999999999986542     25899999999887777642    1  2367788999999886554     


Q ss_pred             CCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          636 ISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       636 ~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                                 .|++++++|...++|.+
T Consensus       285 -----------~i~~~~~dGs~~~~l~~  301 (302)
T 3s25_A          285 -----------KEYCTSTQNPDTIKALQ  301 (302)
T ss_dssp             -----------CEEEEESSSCCSCEECC
T ss_pred             -----------eEEEEECCCCCceEecC
Confidence                       39999999987776653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.68  E-value=1.3e-15  Score=157.03  Aligned_cols=241  Identities=11%  Similarity=0.054  Sum_probs=155.2

Q ss_pred             CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCC
Q 004971          317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRE  396 (721)
Q Consensus       317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~  396 (721)
                      .+...+..++|+| ||++|+..+     .+..|++||+.+++...+..+.+|...+..++|+|+                
T Consensus        11 ~H~~~V~~v~~s~-~g~~lasgs-----~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~----------------   68 (316)
T 3bg1_A           11 SHEDMIHDAQMDY-YGTRLATCS-----SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP----------------   68 (316)
T ss_dssp             ---CCEEEEEECG-GGCEEEEEE-----TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCG----------------
T ss_pred             cccCeEEEeeEcC-CCCEEEEEe-----CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCC----------------
Confidence            4555678899999 999988854     445699999987653333333333333444444331                


Q ss_pred             CCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceE---EEe--ecCceeeEEcCC--C
Q 004971          397 DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRR---QVY--FKNAFSTVWDPV--R  468 (721)
Q Consensus       397 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~---~l~--~~~~~~~~~spd--g  468 (721)
                                                     .+|+.|+..+ ++.|.+||+.+++..   .+.  ...+..++|+|+  |
T Consensus        69 -------------------------------~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g  117 (316)
T 3bg1_A           69 -------------------------------MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYG  117 (316)
T ss_dssp             -------------------------------GGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTC
T ss_pred             -------------------------------CCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCC
Confidence                                           0244444443 455666666554321   121  356788999998  7


Q ss_pred             CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC-----------------CCEEEEEEee
Q 004971          469 EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD-----------------GKWIVFRSTR  531 (721)
Q Consensus       469 ~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD-----------------g~~l~~~s~~  531 (721)
                      ..|+..+       .++.++||++.....  ......+..+...+..++|+|+                 +++|+..+. 
T Consensus       118 ~~lasgs-------~D~~i~lwd~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~-  187 (316)
T 3bg1_A          118 LILACGS-------SDGAISLLTYTGEGQ--WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGC-  187 (316)
T ss_dssp             SCEEEEC-------SSSCEEEEEECSSSC--EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBT-
T ss_pred             cEEEEEc-------CCCCEEEEecCCCCC--cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecC-
Confidence            7888775       578999999865421  0001223344456777899998                 466776665 


Q ss_pred             CCceeEEEEECCCCc-ccceEECcCCCcCceeeEEccCC----CEEEEEEccCCCCCCceeEEEEecCCC---c-eEEee
Q 004971          532 TGYKNLYIMDAEGGE-GYGLHRLTEGPWSDTMCNWSPDG----EWIAFASDRDNPGSGSFEMYLIHPNGT---G-LRKLI  602 (721)
Q Consensus       532 ~g~~~l~~~d~~~g~-~~~~~~l~~~~~~~~~~~~SpDG----~~l~~~~~~~~~~~~~~~i~~~d~~~~---~-~~~l~  602 (721)
                        +..|.+||+.++. ...+..+..+...+..++|+|++    +.|+.++.++       .|.+|++.+.   + ...+.
T Consensus       188 --D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~-------~v~iw~~~~~~~~~~~~~~~  258 (316)
T 3bg1_A          188 --DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG-------RVFIWTCDDASSNTWSPKLL  258 (316)
T ss_dssp             --TSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC-------EEEEEECSSTTCCCCBCCEE
T ss_pred             --CCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC-------eEEEEEccCccccchhhhhh
Confidence              6789999987542 12245566666778899999997    7888888775       8999998762   1 11122


Q ss_pred             ecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          603 QSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       603 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      .. +...+..++|+|||++|+..+.+..
T Consensus       259 ~~-~~~~v~~v~~sp~g~~las~~~D~~  285 (316)
T 3bg1_A          259 HK-FNDVVWHVSWSITANILAVSGGDNK  285 (316)
T ss_dssp             EE-CSSCEEEEEECTTTCCEEEEESSSC
T ss_pred             hc-CCCcEEEEEEcCCCCEEEEEcCCCe
Confidence            22 5667889999999999998887664

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.68  E-value=5.2e-15  Score=150.89  Aligned_cols=246  Identities=14%  Similarity=0.101  Sum_probs=170.4

Q ss_pred             CCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCC--CCEEEEEEeeCCC
Q 004971          316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD--SSRVGYHKCRGGS  393 (721)
Q Consensus       316 ~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~  393 (721)
                      ..+...+..++|+| ||++|+...     .+..|++||+.++..+.+..+.+|...+..++|+|+  |+.|+..+.++. 
T Consensus         6 ~~h~~~V~~~~~s~-~g~~las~s-----~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~-   78 (297)
T 2pm7_B            6 NAHNEMIHDAVMDY-YGKRMATCS-----SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK-   78 (297)
T ss_dssp             CSCSSCEEEEEECT-TSSEEEEEE-----TTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE-
T ss_pred             cCCcCceEEEEECC-CCCEEEEEe-----CCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE-
Confidence            34555677899999 999998854     345699999976533344455667788889999874  888887765554 


Q ss_pred             CCCCCcceeEEEeccCCC-Cccee---cccCCCCceeCcC--CCEEEEEe-CCcEEEEECCCCc---eEEEe--ecCcee
Q 004971          394 TREDGNNQLLLENIKSPL-PDISL---FRFDGSFPSFSPK--GDRIAFVE-FPGVYVVNSDGSN---RRQVY--FKNAFS  461 (721)
Q Consensus       394 ~~~~~~~~l~~~~~~~~~-~~~~~---~~~~~~~~~~SpD--G~~la~~~-~~~l~v~d~~~g~---~~~l~--~~~~~~  461 (721)
                              +.++++..+. ..+..   .......++|+|+  |+.|+..+ ++.|.+||+..+.   ...+.  ...+..
T Consensus        79 --------v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~  150 (297)
T 2pm7_B           79 --------VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS  150 (297)
T ss_dssp             --------EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEE
T ss_pred             --------EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccce
Confidence                    5566665432 11111   1223445799998  88888875 7889999997653   22232  456778


Q ss_pred             eEEcCC-------------CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCC---CEE
Q 004971          462 TVWDPV-------------REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG---KWI  525 (721)
Q Consensus       462 ~~~spd-------------g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg---~~l  525 (721)
                      +.|+|+             ++.|+..+       .++.++||++..... .......+..+...+..++|+|++   ++|
T Consensus       151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs-------~D~~v~lwd~~~~~~-~~~~~~~l~~H~~~V~~v~~sp~~~~~~~l  222 (297)
T 2pm7_B          151 ASWAPATIEEDGEHNGTKESRKFVTGG-------ADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVRDVAWSPTVLLRSYM  222 (297)
T ss_dssp             EEECCCC------------CCEEEEEE-------TTSCEEEEEEETTTT-EEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred             EeecCCcccccccCCCCCCcceEEEEc-------CCCcEEEEEEcCCCc-eEEEEEEecCCCCceEEEEECCCCCCceEE
Confidence            999997             46777776       578999999976431 001234566677788899999995   778


Q ss_pred             EEEEeeCCceeEEEEECCCCcccc-eEEC--cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971          526 VFRSTRTGYKNLYIMDAEGGEGYG-LHRL--TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN  594 (721)
Q Consensus       526 ~~~s~~~g~~~l~~~d~~~g~~~~-~~~l--~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~  594 (721)
                      +..+.   +..|.+||++++.... ...+  ..+...+..++|+|||++|+.++.++       .|.+|+..
T Consensus       223 as~s~---D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~-------~v~lw~~~  284 (297)
T 2pm7_B          223 ASVSQ---DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN-------KVTLWKEN  284 (297)
T ss_dssp             EEEET---TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS-------CEEEEEEC
T ss_pred             EEEEC---CCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC-------cEEEEEEC
Confidence            87776   7789999987643111 1223  23345567899999999999998875       78888865

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.68  E-value=1.1e-14  Score=149.66  Aligned_cols=273  Identities=16%  Similarity=0.133  Sum_probs=182.7

Q ss_pred             ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEe--CCCCCcccCceeecCCCCEEEEEEecCCCCeeeE
Q 004971          272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRV--TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHI  349 (721)
Q Consensus       272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l  349 (721)
                      .+||+++-+..   .. ++.+.||.+....         ....+  ..+...+..++|+| +|++|+...     .+..|
T Consensus        31 l~WS~~~~lAv---g~-D~tV~iWd~~tg~---------~~~~~~~~~~~~~V~~v~~~~-~~~~l~sgs-----~Dg~v   91 (318)
T 4ggc_A           31 VDWSSGNVLAV---AL-DNSVYLWSASSGD---------ILQLLQMEQPGEYISSVAWIK-EGNYLAVGT-----SSAEV   91 (318)
T ss_dssp             EEECTTSEEEE---EE-TTEEEEEETTTCC---------EEEEEECCSTTCCEEEEEECT-TSSEEEEEE-----TTSEE
T ss_pred             EEECCCCEEEE---Ee-CCEEEEEECCCCC---------EEEEEEecCCCCeEEEEEECC-CCCEEEEEE-----CCCcE
Confidence            58999864333   22 6788999543221         22222  34455678899999 999998754     45569


Q ss_pred             EEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec---ccCCCCcee
Q 004971          350 ELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF---RFDGSFPSF  426 (721)
Q Consensus       350 ~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~  426 (721)
                      .+||+++++..  .....+....  ..+++++..++.....+.         +...........+...   ........+
T Consensus        92 ~iw~~~~~~~~--~~~~~h~~~~--~~~~~~~~~l~s~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (318)
T 4ggc_A           92 QLWDVQQQKRL--RNMTSHSARV--GSLSWNSYILSSGSRSGH---------IHHHDVRVAEHHVATLSGHSQEVCGLRW  158 (318)
T ss_dssp             EEEETTTTEEE--EEEECCSSCE--EEEEEETTEEEEEETTSE---------EEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred             EEeecCCceeE--EEecCccceE--EEeecCCCEEEEEecCCc---------eEeeecCCCceeEEEEcCccCceEEEEE
Confidence            99999998743  3334444433  456667777776544332         3333333322222111   122334688


Q ss_pred             CcCCCEEEEEe-CCcEEEEECCCCceE-----EEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971          427 SPKGDRIAFVE-FPGVYVVNSDGSNRR-----QVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD  498 (721)
Q Consensus       427 SpDG~~la~~~-~~~l~v~d~~~g~~~-----~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~  498 (721)
                      +++|+.|+... ++.|.+||+.+++..     ...  .+.+....++|++..++....+    ..++.++||+....   
T Consensus       159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~i~lwd~~~~---  231 (318)
T 4ggc_A          159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG----TSDRHIRIWNVCSG---  231 (318)
T ss_dssp             CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEEC----TTTCEEEEEETTTC---
T ss_pred             cCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEec----CCCCEEEEEecccc---
Confidence            99999988875 788999999876521     111  4567789999998877765432    24577888876543   


Q ss_pred             CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEcc
Q 004971          499 GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       499 ~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~  578 (721)
                         ...........+....|+|+++.+++.+. ..+..|++||+.+++.  +..+..+...+..++|+|||++|+.++.+
T Consensus       232 ---~~~~~~~~~~~v~~~~~~~~~~~~~~~sg-~~d~~i~iwd~~~~~~--~~~l~gH~~~V~~l~~spdg~~l~S~s~D  305 (318)
T 4ggc_A          232 ---ACLSAVDAHSQVCSILWSPHYKELISGHG-FAQNQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAAAD  305 (318)
T ss_dssp             ---CEEEEEECSSCEEEEEEETTTTEEEEEEC-TTTCCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             ---cccccccceeeeeeeeecccccceEEEEE-cCCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence               22333334446777899999999988763 1256899999999886  77777777888999999999999999888


Q ss_pred             CCCCCCceeEEEEecCCC
Q 004971          579 DNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       579 ~~~~~~~~~i~~~d~~~~  596 (721)
                      +       .|.+||+...
T Consensus       306 ~-------~v~iWd~~~~  316 (318)
T 4ggc_A          306 E-------TLRLWRCFEL  316 (318)
T ss_dssp             T-------EEEEECCSCC
T ss_pred             C-------eEEEEECCCC
Confidence            6       8999998654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.68  E-value=2.6e-14  Score=150.41  Aligned_cols=277  Identities=11%  Similarity=0.012  Sum_probs=160.1

Q ss_pred             EEE--EECCCCceEEeeccc-CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEecc-CCC-Ccceecc--cCC
Q 004971          349 IEL--FDLVKNKFIELTRFV-SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK-SPL-PDISLFR--FDG  421 (721)
Q Consensus       349 l~l--~dl~tg~~~~l~~~~-~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~~~~~~--~~~  421 (721)
                      |++  +|.++++...+.... ........++|+|||++|+..... .         +.++++. .+. ..+....  ...
T Consensus        16 i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~---------v~~~~~~~~g~~~~~~~~~~~g~~   85 (365)
T 1jof_A           16 IFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-K---------WSSFAVKSPTEIVHEASHPIGGHP   85 (365)
T ss_dssp             EEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-E---------EEEEEEEETTEEEEEEEEECCSSG
T ss_pred             EEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-e---------EEEEEECCCCCEEEeeEeecCCCC
Confidence            555  456778765554321 112345678999999998876553 2         3344433 221 1111111  123


Q ss_pred             CCceeCcCCCEE-EEE---------------eCCcEEEEECC-CCceE-EEe------ecCceeeEEcCCCCeEEEEecC
Q 004971          422 SFPSFSPKGDRI-AFV---------------EFPGVYVVNSD-GSNRR-QVY------FKNAFSTVWDPVREAVVYTSGG  477 (721)
Q Consensus       422 ~~~~~SpDG~~l-a~~---------------~~~~l~v~d~~-~g~~~-~l~------~~~~~~~~~spdg~~la~~~~~  477 (721)
                      ..++|+|||++| ++.               ..+.+.+|+++ .++.. .+.      ...+..++|||||++|+++.. 
T Consensus        86 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~-  164 (365)
T 1jof_A           86 RANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL-  164 (365)
T ss_dssp             GGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET-
T ss_pred             ccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC-
Confidence            457899999863 332               24568899986 35432 222      135678999999999887652 


Q ss_pred             CCCCCCCCcEEEEEEEccCCCCccceEEcc--cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccc----eE
Q 004971          478 PEFASESSEVDIISINVDDVDGVSAVRRLT--TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYG----LH  551 (721)
Q Consensus       478 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~----~~  551 (721)
                           ..+.+.+|+++..+.  ......+.  .+......++|||||++|++....++.-.+|.+|..+|+...    +.
T Consensus       165 -----~~~~v~~~~~~~~g~--~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~  237 (365)
T 1jof_A          165 -----TANKLWTHRKLASGE--VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP  237 (365)
T ss_dssp             -----TTTEEEEEEECTTSC--EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred             -----CCCEEEEEEECCCCC--EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence                 346778887763121  00112222  113356778999999999888754333344445555665311    11


Q ss_pred             ECcCC-C--c-------CceeeE-EccCCCEEEEEEccCCCCCCceeEEEEecC-CCceEEee--ecCCCCCcCCeEECC
Q 004971          552 RLTEG-P--W-------SDTMCN-WSPDGEWIAFASDRDNPGSGSFEMYLIHPN-GTGLRKLI--QSGSAGRANHPYFSP  617 (721)
Q Consensus       552 ~l~~~-~--~-------~~~~~~-~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~-~~~~~~l~--~~~~~~~~~~~~~Sp  617 (721)
                      .+..+ .  .       ....++ |||||++|+++....+. .....|.+|+++ +++...+.  ..........++|||
T Consensus       238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~-~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp  316 (365)
T 1jof_A          238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF-ELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP  316 (365)
T ss_dssp             SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST-TSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred             cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC-CCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecC
Confidence            22221 0  1       246789 99999999776643200 001268888885 56665432  111234567889999


Q ss_pred             ---CCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEE
Q 004971          618 ---DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR  660 (721)
Q Consensus       618 ---DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  660 (721)
                         ||++|+++..+.+                .|.+|++++..++.
T Consensus       317 ~~~dg~~l~v~~~~~~----------------~v~v~~~~~~~l~~  346 (365)
T 1jof_A          317 CPWSDEWMAITDDQEG----------------WLEIYRWKDEFLHR  346 (365)
T ss_dssp             CTTCTTEEEEECSSSC----------------EEEEEEEETTEEEE
T ss_pred             CCcCCCEEEEEEcCCC----------------eEEEEEEchhhCce
Confidence               8999988766543                37777776664433

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.68  E-value=2.2e-15  Score=158.09  Aligned_cols=276  Identities=14%  Similarity=0.084  Sum_probs=185.6

Q ss_pred             ceeccC---Ce-EEEEeccCCCCcEEEEEEecCCCcceeccccceEEeC-----CCCCcccCceeecCC----CCEEEEE
Q 004971          272 PCWVDE---ST-LFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVT-----PPGLHAFTPATSPGN----NKFIAVA  338 (721)
Q Consensus       272 ~~ws~d---g~-l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~sp~d----G~~la~~  338 (721)
                      .+|+|+   +. .+++...  ++.+.+|......         ....+.     .+...+..++|+| +    |++|+..
T Consensus        24 i~~~p~~~~~~~~~~~~~~--~~~v~vw~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~   91 (366)
T 3k26_A           24 VQFNWHSKEGDPLVFATVG--SNRVTLYECHSQG---------EIRLLQSYVDADADENFYTCAWTY-DSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCCTTSCEEEEEEE--TTEEEEEEECGGG---------CEEEEEEEECSCTTCCEEEEEEEE-CTTTCCEEEEEE
T ss_pred             EEEecccCCCCceEEEECC--CCEEEEEEcCCCc---------EEEeeeeccccCCCCcEEEEEecc-CCCCCCCEEEEe
Confidence            478863   33 4443222  4578889665333         222221     1334577899999 8    5567764


Q ss_pred             EecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcC-CCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce--
Q 004971          339 TRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISP-DSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS--  415 (721)
Q Consensus       339 ~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--  415 (721)
                      .     .+..|.+||+.+++..  .....+...+..+.|+| +++.|+....++.         +.++++..+.....  
T Consensus        92 ~-----~dg~i~v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~---------i~iwd~~~~~~~~~~~  155 (366)
T 3k26_A           92 G-----SRGIIRIINPITMQCI--KHYVGHGNAINELKFHPRDPNLLLSVSKDHA---------LRLWNIQTDTLVAIFG  155 (366)
T ss_dssp             E-----TTCEEEEECTTTCCEE--EEEESCCSCEEEEEECSSCTTEEEEEETTSC---------EEEEETTTTEEEEEEC
T ss_pred             c-----CCCEEEEEEchhceEe--eeecCCCCcEEEEEECCCCCCEEEEEeCCCe---------EEEEEeecCeEEEEec
Confidence            3     3456999999988743  33345677888999999 8888887665554         56666655422111  


Q ss_pred             ---ecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEE-------------------------------eecCce
Q 004971          416 ---LFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQV-------------------------------YFKNAF  460 (721)
Q Consensus       416 ---~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l-------------------------------~~~~~~  460 (721)
                         ........++|+|+|+.|+..+ ++.|.+||+.+++....                               ....+.
T Consensus       156 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  235 (366)
T 3k26_A          156 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD  235 (366)
T ss_dssp             STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred             ccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence               1222344579999999998885 78999999987642110                               134567


Q ss_pred             eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC---------CCccceEEcccCCCCCcceEEccC--CCEEEEEE
Q 004971          461 STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV---------DGVSAVRRLTTNGKNNAFPSVSPD--GKWIVFRS  529 (721)
Q Consensus       461 ~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~SpD--g~~l~~~s  529 (721)
                      .+.|+  ++.|+..+       .++.+.+|++.....         ........+..+...+..++|+||  |++|+..+
T Consensus       236 ~~~~~--~~~l~~~~-------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~  306 (366)
T 3k26_A          236 CVRWL--GDLILSKS-------CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN  306 (366)
T ss_dssp             EEEEE--TTEEEEEC-------SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC
T ss_pred             EEEEc--CCEEEEEe-------cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe
Confidence            78887  67777765       578899999865421         000123445555567788999999  99999887


Q ss_pred             eeCCceeEEEEECCCCccc--ceEECcCC--CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971          530 TRTGYKNLYIMDAEGGEGY--GLHRLTEG--PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN  594 (721)
Q Consensus       530 ~~~g~~~l~~~d~~~g~~~--~~~~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~  594 (721)
                      .   +..|++||+.+++..  ....+..+  ...+..++|+|||++|+.++.++       .|++||+.
T Consensus       307 ~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-------~i~iwd~~  365 (366)
T 3k26_A          307 Q---VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA-------SIWRWDRL  365 (366)
T ss_dssp             T---TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS-------EEEEEEC-
T ss_pred             c---CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCC-------EEEEEEec
Confidence            6   778999999987642  12344444  46678999999999999998875       89999975

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.67  E-value=3.4e-15  Score=157.44  Aligned_cols=249  Identities=14%  Similarity=0.104  Sum_probs=176.3

Q ss_pred             CCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCC--CCEEEEEEeeCCC
Q 004971          316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD--SSRVGYHKCRGGS  393 (721)
Q Consensus       316 ~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~  393 (721)
                      ..|...+..++|+| ||++|+...     .+..|.+||+..+....+.....+...+..++|+++  ++.|+....++. 
T Consensus         8 ~~h~~~v~~~~~s~-~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~-   80 (379)
T 3jrp_A            8 NAHNELIHDAVLDY-YGKRLATCS-----SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK-   80 (379)
T ss_dssp             EECCCCEEEEEECS-SSSEEEEEE-----TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC-
T ss_pred             cCCcccEEEEEEcC-CCCEEEEEE-----CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE-
Confidence            34555678899999 999998854     334599999986555455555667778889999988  888888766554 


Q ss_pred             CCCCCcceeEEEeccCCC-Cccee---cccCCCCceeCcC--CCEEEEEe-CCcEEEEECCCCce---EEEe--ecCcee
Q 004971          394 TREDGNNQLLLENIKSPL-PDISL---FRFDGSFPSFSPK--GDRIAFVE-FPGVYVVNSDGSNR---RQVY--FKNAFS  461 (721)
Q Consensus       394 ~~~~~~~~l~~~~~~~~~-~~~~~---~~~~~~~~~~SpD--G~~la~~~-~~~l~v~d~~~g~~---~~l~--~~~~~~  461 (721)
                              +.++++..+. ..+..   .......++|+|+  ++.|+... ++.|.+||+..+..   ..+.  ...+..
T Consensus        81 --------v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~  152 (379)
T 3jrp_A           81 --------VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS  152 (379)
T ss_dssp             --------EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEE
T ss_pred             --------EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEE
Confidence                    4555554432 01111   1223445799999  88888885 78899999987742   2222  456789


Q ss_pred             eEEcC-------------CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC---CCEE
Q 004971          462 TVWDP-------------VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD---GKWI  525 (721)
Q Consensus       462 ~~~sp-------------dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD---g~~l  525 (721)
                      +.|+|             |++.|+..+       .++.+.+|++..... .......+..+...+..++|+||   +++|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~-~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l  224 (379)
T 3jrp_A          153 ASWAPATIEEDGEHNGTKESRKFVTGG-------ADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVRDVAWSPTVLLRSYL  224 (379)
T ss_dssp             EEECCCC----------CTTCEEEEEE-------TTSCEEEEEEETTTT-EEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred             EEEcCccccccccccCCCCCCEEEEEe-------CCCeEEEEEecCCCc-ceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence            99999             689998886       578999999986542 00122345556667888999999   8888


Q ss_pred             EEEEeeCCceeEEEEECCCCcccc-eEECc--CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971          526 VFRSTRTGYKNLYIMDAEGGEGYG-LHRLT--EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG  597 (721)
Q Consensus       526 ~~~s~~~g~~~l~~~d~~~g~~~~-~~~l~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~  597 (721)
                      +..+.   +..|++||+.+++... ...+.  .+...+..++|+|||++|+++..++       .|++|++..+.
T Consensus       225 ~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-------~i~iw~~~~~~  289 (379)
T 3jrp_A          225 ASVSQ---DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN-------KVTLWKENLEG  289 (379)
T ss_dssp             EEEET---TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS-------SEEEEEEEETT
T ss_pred             EEEeC---CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC-------cEEEEeCCCCC
Confidence            88876   6789999998774211 12222  2455678899999999999988875       78889887443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.67  E-value=3e-14  Score=148.47  Aligned_cols=278  Identities=10%  Similarity=0.021  Sum_probs=163.9

Q ss_pred             CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeE
Q 004971          324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLL  403 (721)
Q Consensus       324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~  403 (721)
                      .+++++ +++.++.. .    .+..|++||+++++........ .......++|+|||+.+++.....        ..++
T Consensus         4 g~~~~~-~~~~~v~~-~----~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~~~v~~~~~--------~~i~   68 (349)
T 1jmx_B            4 GPALKA-GHEYMIVT-N----YPNNLHVVDVASDTVYKSCVMP-DKFGPGTAMMAPDNRTAYVLNNHY--------GDIY   68 (349)
T ss_dssp             CCCCCT-TCEEEEEE-E----TTTEEEEEETTTTEEEEEEECS-SCCSSCEEEECTTSSEEEEEETTT--------TEEE
T ss_pred             cccccC-CCEEEEEe-C----CCCeEEEEECCCCcEEEEEecC-CCCCCceeEECCCCCEEEEEeCCC--------CcEE
Confidence            345666 66654442 2    2345999999998754433221 111356789999999887765322        3577


Q ss_pred             EEeccCCCCccee-cc-------cCCCCceeCcCCCEEEEEe-------------CCcEEEEECCCCceE----EEe-ec
Q 004971          404 LENIKSPLPDISL-FR-------FDGSFPSFSPKGDRIAFVE-------------FPGVYVVNSDGSNRR----QVY-FK  457 (721)
Q Consensus       404 ~~~~~~~~~~~~~-~~-------~~~~~~~~SpDG~~la~~~-------------~~~l~v~d~~~g~~~----~l~-~~  457 (721)
                      ++++.++...... ..       .....++|+|||++|++..             ...|++||+.+++..    ... ..
T Consensus        69 ~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~  148 (349)
T 1jmx_B           69 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR  148 (349)
T ss_dssp             EEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS
T ss_pred             EEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC
Confidence            7777654221111 11       1145679999999998885             489999999875432    222 34


Q ss_pred             CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-C-----------------------CC
Q 004971          458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-K-----------------------NN  513 (721)
Q Consensus       458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~-----------------------~~  513 (721)
                      .+..++|+|||+ +++..         ..  |+.++..+.   .....+.... .                       ..
T Consensus       149 ~~~~~~~s~dg~-l~~~~---------~~--i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (349)
T 1jmx_B          149 QVYLMRAADDGS-LYVAG---------PD--IYKMDVKTG---KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML  213 (349)
T ss_dssp             SCCCEEECTTSC-EEEES---------SS--EEEECTTTC---CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred             cccceeECCCCc-EEEcc---------Cc--EEEEeCCCC---ceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence            567788999999 66642         22  555555443   1223332221 0                       01


Q ss_pred             cceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEcc-CCCEEEEEEccCCCCCCceeEEEEe
Q 004971          514 AFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP-DGEWIAFASDRDNPGSGSFEMYLIH  592 (721)
Q Consensus       514 ~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~i~~~d  592 (721)
                      ...++++|++.......  +...++.++..+++..... +.........++||| ||++|++.  ..       .|++||
T Consensus       214 ~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~dg~~l~~~--~~-------~v~~~d  281 (349)
T 1jmx_B          214 YTIARFKDDKQDPATAD--LLYGYLSVDLKTGKTHTQE-FADLTELYFTGLRSPKDPNQIYGV--LN-------RLAKYD  281 (349)
T ss_dssp             EEEEEC-------CCCE--EEEEEEEEETTTCCEEEEE-EEECSSCEEEEEECSSCTTEEEEE--ES-------EEEEEE
T ss_pred             eeeeecCCCcCCccccc--cceeEEEEeccCCcEEecc-cccCCCcceeeEecCCCCCEEEEE--cC-------eEEEEE
Confidence            11333444322211111  1223445788877732111 112233456789999 99998888  32       899999


Q ss_pred             cCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EEec
Q 004971          593 PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLT  662 (721)
Q Consensus       593 ~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt  662 (721)
                      +.+++......  .......++|+|||++|++... .+                .|++||+++++. .++.
T Consensus       282 ~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~-~~----------------~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          282 LKQRKLIKAAN--LDHTYYCVAFDKKGDKLYLGGT-FN----------------DLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             TTTTEEEEEEE--CSSCCCEEEECSSSSCEEEESB-SS----------------EEEEEETTTTEEEEEEE
T ss_pred             CccCeEEEEEc--CCCCccceEECCCCCEEEEecC-CC----------------eEEEEeccccceeeeee
Confidence            99988765554  2345678999999999887432 22                599999988764 3444

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.66  E-value=6.1e-15  Score=160.00  Aligned_cols=217  Identities=9%  Similarity=-0.046  Sum_probs=154.7

Q ss_pred             CCCceeCcCCCEEEEE--eCCcEEEEECC--CCceEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEE
Q 004971          421 GSFPSFSPKGDRIAFV--EFPGVYVVNSD--GSNRRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS  491 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~--~~~~l~v~d~~--~g~~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~  491 (721)
                      ...++|+|||++|+++  .++.|.+|++.  +++.....     ...+..+.|+|||+.|++++       .++.+.+|.
T Consensus       105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-------~~g~v~~~~  177 (450)
T 2vdu_B          105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIAD-------KFGDVYSID  177 (450)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEE-------TTSEEEEEE
T ss_pred             eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEe-------CCCcEEEEe
Confidence            3457899999997444  37889999998  76644332     35678999999999999986       356666665


Q ss_pred             EEccCCCCcc-ceEEcccCCCCCcceEEccC---CCEEEEEEeeCCceeEEEEECCCCcccceEE-CcCCCcCceeeEEc
Q 004971          492 INVDDVDGVS-AVRRLTTNGKNNAFPSVSPD---GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR-LTEGPWSDTMCNWS  566 (721)
Q Consensus       492 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~SpD---g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~-l~~~~~~~~~~~~S  566 (721)
                      +.....  .. ....+..+...+..++|+||   +++|+..+.   +..|++||+.+++.  +.. +..+...+..++|+
T Consensus       178 ~~~~~~--~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~---d~~i~vwd~~~~~~--~~~~~~~h~~~v~~~~~s  250 (450)
T 2vdu_B          178 INSIPE--EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR---DEHIKISHYPQCFI--VDKWLFGHKHFVSSICCG  250 (450)
T ss_dssp             TTSCCC--SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET---TSCEEEEEESCTTC--EEEECCCCSSCEEEEEEC
T ss_pred             cCCccc--ccccceeeecccCceEEEEEcCCCCCCcEEEEEcC---CCcEEEEECCCCce--eeeeecCCCCceEEEEEC
Confidence            433221  00 11244455567788999999   888888876   67899999998874  444 44566678899999


Q ss_pred             cCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec------------------------CCCCCcCCeEECCCCCEE
Q 004971          567 PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS------------------------GSAGRANHPYFSPDGKSI  622 (721)
Q Consensus       567 pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~------------------------~~~~~~~~~~~SpDG~~l  622 (721)
                       ||++|+.++.+.       .|++||+.+++.......                        .....+..+.|+|||++|
T Consensus       251 -d~~~l~s~~~d~-------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  322 (450)
T 2vdu_B          251 -KDYLLLSAGGDD-------KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV  322 (450)
T ss_dssp             -STTEEEEEESSS-------EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred             -CCCEEEEEeCCC-------eEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence             999999998775       899999999876554431                        012345678999999999


Q ss_pred             EEEEecCCCcCCCCCCCCCCCCCccEEEEEc--CCC---C-eEEeccCCCCCCCceecCC
Q 004971          623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKL--DGS---D-LKRLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~--~~~---~-~~~lt~~~~~~~~~~~sp~  676 (721)
                      ++.+...+                .|++|++  ..+   + ...+..+ ..+...+|+|.
T Consensus       323 ~~~~~~d~----------------~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~  365 (450)
T 2vdu_B          323 AFFVEATK----------------CIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND  365 (450)
T ss_dssp             EEEETTCS----------------EEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred             EEEECCCC----------------eEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence            88874433                4899998  443   2 2344444 55677899996

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=99.66  E-value=8.2e-14  Score=160.42  Aligned_cols=298  Identities=8%  Similarity=0.012  Sum_probs=193.3

Q ss_pred             cCCCCEEEEEEecCCCCeeeEEEEEC---CCC--ceEEeecc----cCCCC-cccCcEEc-CCCCEEEEEEeeCCCCCCC
Q 004971          329 PGNNKFIAVATRRPTSSYRHIELFDL---VKN--KFIELTRF----VSPKT-HHLNPFIS-PDSSRVGYHKCRGGSTRED  397 (721)
Q Consensus       329 p~dG~~la~~~~~~g~~~~~l~l~dl---~tg--~~~~l~~~----~~~~~-~~~~~~~S-pdg~~l~~~~~~~~~~~~~  397 (721)
                      + +|++++|.....+.....+++.+.   ..+  +.+.+...    ..+.. ....+.|| |||++|+|.....+...  
T Consensus       124 ~-~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~--  200 (751)
T 2xe4_A          124 V-YGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEV--  200 (751)
T ss_dssp             E-ETTEEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSSC--
T ss_pred             E-ECCEEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCce--
Confidence            6 899999987766655556777776   333  33333322    11121 45678999 99999999887654211  


Q ss_pred             CcceeEEEeccCC-CCcceecccCCCCceeCcCCCEEEEEeC------CcEEEEECCCCce--EEEee----cCceeeEE
Q 004971          398 GNNQLLLENIKSP-LPDISLFRFDGSFPSFSPKGDRIAFVEF------PGVYVVNSDGSNR--RQVYF----KNAFSTVW  464 (721)
Q Consensus       398 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~SpDG~~la~~~~------~~l~v~d~~~g~~--~~l~~----~~~~~~~~  464 (721)
                        ..|++.++.++ .............++|||||+.|+|...      ..|+++++.++..  +.+..    .....+.|
T Consensus       201 --~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~  278 (751)
T 2xe4_A          201 --YTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK  278 (751)
T ss_dssp             --EEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE
T ss_pred             --EEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE
Confidence              46999998876 4211111122456899999999999842      3699999988752  34431    23456889


Q ss_pred             cCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccce--EEcccCCCCCcceEEccC---CCEEEEEEeeC--CceeE
Q 004971          465 DPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAV--RRLTTNGKNNAFPSVSPD---GKWIVFRSTRT--GYKNL  537 (721)
Q Consensus       465 spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~SpD---g~~l~~~s~~~--g~~~l  537 (721)
                      ||||++|++.+.      ......||.++.++..  ...  +.+....   ..+.|+|+   |++|++.++++  +..+|
T Consensus       279 SpDg~~l~~~~~------~~~~~~l~~~d~~~~~--~~~~~~~l~~~~---~~~~~s~~~~~g~~l~~~t~~~~a~~~~L  347 (751)
T 2xe4_A          279 AADTNTLCIGSQ------SPETAEVHLLDLRKGN--AHNTLEIVRPRE---KGVRYDVQMHGTSHLVILTNEGGAVNHKL  347 (751)
T ss_dssp             CTTSSEEEEEEE------CSSCEEEEEEESSSCT--TCCCEEESSCCC---TTCCEEEEEETTTEEEEEECTTTCTTCEE
T ss_pred             CCCCCEEEEEec------CCCCceEEEEECCCCC--CCceeEEeecCC---CCceEEEeeeeCCEEEEEeCCCCCCCcEE
Confidence            999999999874      2346778888876530  123  5555433   23456666   99999999875  56799


Q ss_pred             EEEECCCC-cccceEE-CcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec-------CCCc-eEEeeecCCC
Q 004971          538 YIMDAEGG-EGYGLHR-LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP-------NGTG-LRKLIQSGSA  607 (721)
Q Consensus       538 ~~~d~~~g-~~~~~~~-l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~-------~~~~-~~~l~~~~~~  607 (721)
                      ++++++++ +   ... +........-..+++++++|++.....    +...|+++++       ++++ .+.+... ..
T Consensus       348 ~~~d~~~~~~---~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~----g~~~l~~~dl~~~~~~~~~g~~~~~l~l~-~~  419 (751)
T 2xe4_A          348 LIAPRGQPSD---WSHVLVDHSEDVFMESIAVRSNYLVVAGRRA----GLTRIWTMMADSQDGVFKAGTGLREVVME-EP  419 (751)
T ss_dssp             EEEETTSTTC---CCCEEECCCSSEEEEEEEECSSEEEEEEEET----TEEEEEEEECCTTTSCCCTTTCCEECCCC-CS
T ss_pred             EEEcCCCccc---ceeeEECCCCCcEEEEEEEECCEEEEEEEeC----CEEEEEEEecccccccccCCccceEECCC-Cc
Confidence            99999863 3   233 333333223345666788999988774    7789999996       5666 6666432 11


Q ss_pred             CCcCCeEE----CCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          608 GRANHPYF----SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       608 ~~~~~~~~----SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      .....+.+    ++|++.|++.......             ++.+|.+|+++++.+.|+.
T Consensus       420 ~~~~~~~~~~~~~~~~~~l~~~~ss~~~-------------P~~~~~~d~~~~~~~~l~~  466 (751)
T 2xe4_A          420 IFTVHLVESQMLEYEEPTFRMEYSSLAT-------------PNTWFDVSPQDHSRTAVKV  466 (751)
T ss_dssp             SCEEEECGGGCCCTTCSCEEEEEEETTE-------------EEEEEEECTTTCCEEEEEE
T ss_pred             eeEEEeccCcccCCCCCEEEEEEeCCCC-------------CCEEEEEECCCCcEEEEec
Confidence            11122222    5688777776554433             3579999999888888875

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.65  E-value=1.4e-14  Score=151.70  Aligned_cols=273  Identities=9%  Similarity=0.002  Sum_probs=176.9

Q ss_pred             CCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971          316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR  395 (721)
Q Consensus       316 ~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~  395 (721)
                      ..+...+..++||| ||++|+....     + .+.+||+.+++.......    ..+....++++++.++++....    
T Consensus        16 ~~h~~~V~~v~fs~-dg~~la~g~~-----~-~~~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d----   80 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQ-DQSCLILSTL-----K-SFEIYNVHPVAHIMSQEM----RHLSKVRMLHRTNYVAFVTGVK----   80 (355)
T ss_dssp             ---CCCCCEEEECT-TSSEEEEECS-----S-EEEEEEETTEEEEEEEEC----SCCCEEEECTTSSEEEEECSST----
T ss_pred             ccCCCceEEEEECC-CCCEEEEEcC-----C-EEEEEecCCcceeeeeec----CCeEEEEEcCCCCEEEEEECCc----
Confidence            34555678899999 9998887432     1 278999887754332211    1345578889998887654332    


Q ss_pred             CCCcceeEEEeccCCCCcce-ecccCCCCceeCcCCCEEEEEeCCcEEEEECCCC-ce-EEEeecCceeeEEcCCCCeEE
Q 004971          396 EDGNNQLLLENIKSPLPDIS-LFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGS-NR-RQVYFKNAFSTVWDPVREAVV  472 (721)
Q Consensus       396 ~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g-~~-~~l~~~~~~~~~~spdg~~la  472 (721)
                          ..+.+++...+..... ........+.++++  .++...++.|++||+.++ +. ..+.. ......+++  ..++
T Consensus        81 ----~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~--~~la  151 (355)
T 3vu4_A           81 ----EVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRITDDIR-FGGVCEFSN--GLLV  151 (355)
T ss_dssp             ----TEEEEEETTTTEEEEEEECSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSSCCEE-EEEEEEEET--TEEE
T ss_pred             ----cEEEEEECCCCcEEEEEECCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeEEecc-CCceEEEEc--cEEE
Confidence                2466677655421111 11222334566665  466667889999999877 32 22222 333456666  7787


Q ss_pred             EEecCCCCCCCCCcEEEEEEEccCCC---Cc-------cc-eEEcccCCCCCcceEEccCCCEEEEEEeeCCcee-EEEE
Q 004971          473 YTSGGPEFASESSEVDIISINVDDVD---GV-------SA-VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKN-LYIM  540 (721)
Q Consensus       473 ~~~~~~~~~~~~~~~~i~~~~~~~~~---~~-------~~-~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~-l~~~  540 (721)
                      +.+.     ..++.+.||++......   ..       .. ...+..+...+..++|+|||++|+..+.   +.. |.+|
T Consensus       152 ~~sg-----~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~---d~~~v~iw  223 (355)
T 3vu4_A          152 YSNE-----FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ---DGTIIRVF  223 (355)
T ss_dssp             EEES-----SCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET---TCSEEEEE
T ss_pred             EeCC-----CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC---CCCEEEEE
Confidence            7632     25788999988653200   00       01 4566777778889999999999999887   777 9999


Q ss_pred             ECCCCcccceEECc-C-CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee---------------
Q 004971          541 DAEGGEGYGLHRLT-E-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ---------------  603 (721)
Q Consensus       541 d~~~g~~~~~~~l~-~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~---------------  603 (721)
                      |+.+++.  +..+. . +...+..++|+|||++|+.++.++       .|.+||+..+...+...               
T Consensus       224 d~~~~~~--~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~-------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (355)
T 3vu4_A          224 KTEDGVL--VREFRRGLDRADVVDMKWSTDGSKLAVVSDKW-------TLHVFEIFNDQDNKRHALKGWINMKYFQSEWS  294 (355)
T ss_dssp             ETTTCCE--EEEEECTTCCSCEEEEEECTTSCEEEEEETTC-------EEEEEESSCCSCCCSEETTTTEECCCCCCSSC
T ss_pred             ECCCCcE--EEEEEcCCCCCcEEEEEECCCCCEEEEEECCC-------EEEEEEccCCCCcccccccceeeccccccccc
Confidence            9998875  55565 2 566788999999999999998875       89999997653211100               


Q ss_pred             -------cCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          604 -------SGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       604 -------~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                             .........++|++||+.|+....++
T Consensus       295 ~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg  327 (355)
T 3vu4_A          295 LCNFKLSVDKHVRGCKIAWISESSLVVVWPHTR  327 (355)
T ss_dssp             SEEEECCCCTTCCCCEEEESSSSEEEEEETTTT
T ss_pred             eeEEEeccCCCCCceEEEEeCCCCEEEEEeCCC
Confidence                   00111125689999999998876654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.65  E-value=2.2e-14  Score=148.91  Aligned_cols=248  Identities=10%  Similarity=0.014  Sum_probs=171.1

Q ss_pred             cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcc------eecccCCCCceeCc--CCCEEEEEe
Q 004971          366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI------SLFRFDGSFPSFSP--KGDRIAFVE  437 (721)
Q Consensus       366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~Sp--DG~~la~~~  437 (721)
                      .+|...+..++|+|+|+.|+....++.         +.++++.......      .........++|+|  |++.|+..+
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~---------i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~   78 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQH---------IKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS   78 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSE---------EEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCe---------EEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc
Confidence            346677888999999999988765544         5555555432111      11223344578999  699988885


Q ss_pred             -CCcEEEEECCCCc----------eEEEe--ecCceeeEEcCC--CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCcc-
Q 004971          438 -FPGVYVVNSDGSN----------RRQVY--FKNAFSTVWDPV--REAVVYTSGGPEFASESSEVDIISINVDDVDGVS-  501 (721)
Q Consensus       438 -~~~l~v~d~~~g~----------~~~l~--~~~~~~~~~spd--g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-  501 (721)
                       ++.|.+||+.+++          ...+.  ...+..+.|+|+  ++.|+.++       .++.+.+|++......... 
T Consensus        79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-------~dg~v~iwd~~~~~~~~~~~  151 (351)
T 3f3f_A           79 YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG-------NDGILRLYDALEPSDLRSWT  151 (351)
T ss_dssp             TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-------TTCEEEEEECSSTTCTTCCE
T ss_pred             CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec-------CCCcEEEecCCChHHhcccc
Confidence             7889999998763          12222  456789999999  99999886       5788999987654320000 


Q ss_pred             ---ceEEcc----cCCCCCcceEEccC---CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCC--
Q 004971          502 ---AVRRLT----TNGKNNAFPSVSPD---GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG--  569 (721)
Q Consensus       502 ---~~~~l~----~~~~~~~~~~~SpD---g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG--  569 (721)
                         ....+.    .+...+..++|+|+   ++.|++.+.   +..+..++...++...+..+..+...+..++|+|+|  
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~  228 (351)
T 3f3f_A          152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL---EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR  228 (351)
T ss_dssp             EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET---TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred             ccccccccccccCCcccceeEEEeccCCCCCcEEEEecC---CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence               000010    22345677899998   888888876   667777777766644455566667778899999998  


Q ss_pred             --CEEEEEEccCCCCCCceeEEEEecCCCc----------------------------------------------eEEe
Q 004971          570 --EWIAFASDRDNPGSGSFEMYLIHPNGTG----------------------------------------------LRKL  601 (721)
Q Consensus       570 --~~l~~~~~~~~~~~~~~~i~~~d~~~~~----------------------------------------------~~~l  601 (721)
                        +.|+.++.++       .|++||+..+.                                              ....
T Consensus       229 ~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (351)
T 3f3f_A          229 WYQLIATGCKDG-------RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE  301 (351)
T ss_dssp             SSEEEEEEETTS-------CEEEEEEEECC---------------------------------------CCSEEEEEEEE
T ss_pred             cceEEEEEcCCC-------eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE
Confidence              7788877765       79999987641                                              1111


Q ss_pred             eecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971          602 IQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       602 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  657 (721)
                      . .++...+..++|+|||++|+..+.++                 .|.+|++..++
T Consensus       302 ~-~~h~~~v~~~~~s~~~~~l~s~~~dg-----------------~v~iw~~~~~~  339 (351)
T 3f3f_A          302 H-DDHNGEVWSVSWNLTGTILSSAGDDG-----------------KVRLWKATYSN  339 (351)
T ss_dssp             E-CTTSSCEEEEEECSSSCCEEEEETTS-----------------CEEEEEECTTS
T ss_pred             E-ecccccEEEEEEcCCCCEEEEecCCC-----------------cEEEEecCcCc
Confidence            1 23567788999999999998887665                 38999988764

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.1e-14  Score=148.98  Aligned_cols=271  Identities=8%  Similarity=-0.030  Sum_probs=179.2

Q ss_pred             ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEE
Q 004971          272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIEL  351 (721)
Q Consensus       272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l  351 (721)
                      .+| ++++++++  ...++.+.+|.+....         ....+..+...+..++|+| ++++|+...     .+..|.+
T Consensus        24 ~~~-~~~~~l~s--~~~dg~v~vw~~~~~~---------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-----~dg~i~~   85 (313)
T 3odt_A           24 VVA-VDDSKVAS--VSRDGTVRLWSKDDQW---------LGTVVYTGQGFLNSVCYDS-EKELLLFGG-----KDTMING   85 (313)
T ss_dssp             EEE-EETTEEEE--EETTSEEEEEEESSSE---------EEEEEEECSSCEEEEEEET-TTTEEEEEE-----TTSCEEE
T ss_pred             EEe-cCCCEEEE--EEcCCcEEEEECCCCE---------EEEEeecCCccEEEEEECC-CCCEEEEec-----CCCeEEE
Confidence            367 77766553  3347899999763222         3344445566778899999 999988854     3345999


Q ss_pred             EECCCCce-EEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCc-C
Q 004971          352 FDLVKNKF-IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP-K  429 (721)
Q Consensus       352 ~dl~tg~~-~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Sp-D  429 (721)
                      |++..... ..+.....+...+..+.|  +++.|+....++.         +.+++.......+.........+.|+| +
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~---------i~~~d~~~~~~~~~~~~~~v~~~~~~~~~  154 (313)
T 3odt_A           86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKT---------AKVWKEGSLVYNLQAHNASVWDAKVVSFS  154 (313)
T ss_dssp             EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSE---------EEEEETTEEEEEEECCSSCEEEEEEEETT
T ss_pred             EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCC---------EEEEcCCcEEEecccCCCceeEEEEccCC
Confidence            99876531 123333445666666777  5778777655443         444442111111111122233457777 8


Q ss_pred             CCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE
Q 004971          430 GDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR  505 (721)
Q Consensus       430 G~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  505 (721)
                      ++.++... ++.|.+||... ....+.   ...+..+.|+|+++ ++..+       .++.+.+|++....     ....
T Consensus       155 ~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~~~~~~-~~~~~-------~dg~i~i~d~~~~~-----~~~~  220 (313)
T 3odt_A          155 ENKFLTASADKTIKLWQNDK-VIKTFSGIHNDVVRHLAVVDDGH-FISCS-------NDGLIKLVDMHTGD-----VLRT  220 (313)
T ss_dssp             TTEEEEEETTSCEEEEETTE-EEEEECSSCSSCEEEEEEEETTE-EEEEE-------TTSEEEEEETTTCC-----EEEE
T ss_pred             CCEEEEEECCCCEEEEecCc-eEEEEeccCcccEEEEEEcCCCe-EEEcc-------CCCeEEEEECCchh-----hhhh
Confidence            88888875 78999999322 122222   45678899999998 66554       56788888875432     5566


Q ss_pred             cccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCc
Q 004971          506 LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS  585 (721)
Q Consensus       506 l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~  585 (721)
                      +..+...+..++|+|||+ |+..+.   +..|++||+.+++.  +..+..+...+..++|+|||+ ++.+..++      
T Consensus       221 ~~~~~~~i~~~~~~~~~~-l~~~~~---dg~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg------  287 (313)
T 3odt_A          221 YEGHESFVYCIKLLPNGD-IVSCGE---DRTVRIWSKENGSL--KQVITLPAISIWSVDCMSNGD-IIVGSSDN------  287 (313)
T ss_dssp             EECCSSCEEEEEECTTSC-EEEEET---TSEEEEECTTTCCE--EEEEECSSSCEEEEEECTTSC-EEEEETTS------
T ss_pred             hhcCCceEEEEEEecCCC-EEEEec---CCEEEEEECCCCce--eEEEeccCceEEEEEEccCCC-EEEEeCCC------
Confidence            666777888899999994 666665   78899999998875  555555566778999999998 55566554      


Q ss_pred             eeEEEEecCCCceE
Q 004971          586 FEMYLIHPNGTGLR  599 (721)
Q Consensus       586 ~~i~~~d~~~~~~~  599 (721)
                       .|++|++.+++..
T Consensus       288 -~i~iw~~~~~~~~  300 (313)
T 3odt_A          288 -LVRIFSQEKSRWA  300 (313)
T ss_dssp             -CEEEEESCGGGCC
T ss_pred             -cEEEEeCCCCcee
Confidence             8999999887543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.64  E-value=1.5e-14  Score=150.24  Aligned_cols=267  Identities=11%  Similarity=-0.021  Sum_probs=183.9

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCC-EEEEEEecCCCCeeeE
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNK-FIAVATRRPTSSYRHI  349 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~-~la~~~~~~g~~~~~l  349 (721)
                      ..+|+||++++++  ...++.+.+|.+......      .....+..+...+..++|+| +++ +|+...     .+..|
T Consensus        16 ~~~~s~~~~~l~~--~~~d~~v~iw~~~~~~~~------~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~-----~dg~i   81 (342)
T 1yfq_A           16 DIKIIPSKSLLLI--TSWDGSLTVYKFDIQAKN------VDLLQSLRYKHPLLCCNFID-NTDLQIYVGT-----VQGEI   81 (342)
T ss_dssp             EEEEEGGGTEEEE--EETTSEEEEEEEETTTTE------EEEEEEEECSSCEEEEEEEE-SSSEEEEEEE-----TTSCE
T ss_pred             EEEEcCCCCEEEE--EcCCCeEEEEEeCCCCcc------ccceeeeecCCceEEEEECC-CCCcEEEEEc-----CCCeE
Confidence            3479999886663  233788999976543311      01334445566778899999 999 888754     33459


Q ss_pred             EEEEC-CCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccC---------C--CCcceec
Q 004971          350 ELFDL-VKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS---------P--LPDISLF  417 (721)
Q Consensus       350 ~l~dl-~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~---------~--~~~~~~~  417 (721)
                      ++||+ .+++...+.. ..+...+..+.|+| ++.|+....++.         +.++++..         .  ...+. .
T Consensus        82 ~~wd~~~~~~~~~~~~-~~~~~~v~~l~~~~-~~~l~s~~~d~~---------i~iwd~~~~~~~~~~~~~~~~~~~~-~  149 (342)
T 1yfq_A           82 LKVDLIGSPSFQALTN-NEANLGICRICKYG-DDKLIAASWDGL---------IEVIDPRNYGDGVIAVKNLNSNNTK-V  149 (342)
T ss_dssp             EEECSSSSSSEEECBS-CCCCSCEEEEEEET-TTEEEEEETTSE---------EEEECHHHHTTBCEEEEESCSSSSS-S
T ss_pred             EEEEeccCCceEeccc-cCCCCceEEEEeCC-CCEEEEEcCCCe---------EEEEcccccccccccccCCeeeEEe-e
Confidence            99999 8887644432 01567788899999 888887665443         55666543         2  11111 2


Q ss_pred             ccCCCCceeCcCCCEEEEE-eCCcEEEEECCC-Cce--EEEe---ecCceeeEEcC-CCCeEEEEecCCCCCCCCCcEEE
Q 004971          418 RFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDG-SNR--RQVY---FKNAFSTVWDP-VREAVVYTSGGPEFASESSEVDI  489 (721)
Q Consensus       418 ~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~-g~~--~~l~---~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i  489 (721)
                      ......++|+|++  ++.. .++.|.+||+.+ +..  ....   ...+..+.|+| +++.++..+       .++.+.|
T Consensus       150 ~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-------~dg~i~i  220 (342)
T 1yfq_A          150 KNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS-------IDGRVAV  220 (342)
T ss_dssp             CCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-------TTSEEEE
T ss_pred             CCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe-------cCCcEEE
Confidence            2334457889887  5555 577999999987 542  2222   45678999999 999999887       5789999


Q ss_pred             EEEEccCCC-CccceEEcccCCC---------CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC-Cc
Q 004971          490 ISINVDDVD-GVSAVRRLTTNGK---------NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-PW  558 (721)
Q Consensus       490 ~~~~~~~~~-~~~~~~~l~~~~~---------~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~-~~  558 (721)
                      |+++..+.. .......+..+..         .+..++|+|||++|+..+.   +..|++||+.+++.  +..+..+ ..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~--~~~~~~~h~~  295 (342)
T 1yfq_A          221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS---DGIISCWNLQTRKK--IKNFAKFNED  295 (342)
T ss_dssp             EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET---TSCEEEEETTTTEE--EEECCCCSSS
T ss_pred             EEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC---CceEEEEcCccHhH--hhhhhcccCC
Confidence            999876100 0014455555432         6778899999999998886   67899999998875  6666665 66


Q ss_pred             CceeeEEccCCCEEEEEEccC
Q 004971          559 SDTMCNWSPDGEWIAFASDRD  579 (721)
Q Consensus       559 ~~~~~~~SpDG~~l~~~~~~~  579 (721)
                      .+..++  |||++|++++.++
T Consensus       296 ~v~~~~--~~~~~l~s~s~Dg  314 (342)
T 1yfq_A          296 SVVKIA--CSDNILCLATSDD  314 (342)
T ss_dssp             EEEEEE--ECSSEEEEEEECT
T ss_pred             CceEec--CCCCeEEEEecCC
Confidence            666777  9999999998874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.64  E-value=8.3e-14  Score=150.77  Aligned_cols=308  Identities=12%  Similarity=0.113  Sum_probs=200.7

Q ss_pred             eeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEE
Q 004971          273 CWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELF  352 (721)
Q Consensus       273 ~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~  352 (721)
                      +++++|+.+++  ...++.+.+|......         ....+..+...+..+.+   +++.++...     .++.|.+|
T Consensus       124 ~~~~~g~~l~s--g~~dg~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~---~~~~l~s~~-----~dg~i~vw  184 (445)
T 2ovr_B          124 CLQFCGNRIVS--GSDDNTLKVWSAVTGK---------CLRTLVGHTGGVWSSQM---RDNIIISGS-----TDRTLKVW  184 (445)
T ss_dssp             EEEEETTEEEE--EETTSCEEEEETTTCC---------EEEECCCCSSCEEEEEE---ETTEEEEEE-----TTSCEEEE
T ss_pred             EEEEcCCEEEE--EECCCcEEEEECCCCc---------EEEEEcCCCCCEEEEEe---cCCEEEEEe-----CCCeEEEE
Confidence            45566676663  3337899999543221         34455556656667777   456776643     34559999


Q ss_pred             ECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCE
Q 004971          353 DLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR  432 (721)
Q Consensus       353 dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~  432 (721)
                      |+.+++..  .....+...+..+.|+  ++.|+....++.         +.++++..+............-..++.+|+.
T Consensus       185 d~~~~~~~--~~~~~h~~~v~~~~~~--~~~l~s~s~dg~---------i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~  251 (445)
T 2ovr_B          185 NAETGECI--HTLYGHTSTVRCMHLH--EKRVVSGSRDAT---------LRVWDIETGQCLHVLMGHVAAVRCVQYDGRR  251 (445)
T ss_dssp             ETTTTEEE--EEECCCSSCEEEEEEE--TTEEEEEETTSE---------EEEEESSSCCEEEEEECCSSCEEEEEECSSC
T ss_pred             ECCcCcEE--EEECCCCCcEEEEEec--CCEEEEEeCCCE---------EEEEECCCCcEEEEEcCCcccEEEEEECCCE
Confidence            99998743  3334556667667775  667777654443         6666665442211111111111233347888


Q ss_pred             EEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc
Q 004971          433 IAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT  508 (721)
Q Consensus       433 la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~  508 (721)
                      ++..+ ++.|.+||+.+++.....   ...+..+.|  +++.++..+       .++.+.+|++....     ....+..
T Consensus       252 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-------~d~~i~i~d~~~~~-----~~~~~~~  317 (445)
T 2ovr_B          252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS-------LDTSIRVWDVETGN-----CIHTLTG  317 (445)
T ss_dssp             EEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE-------TTSCEEEEETTTCC-----EEEEECC
T ss_pred             EEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe-------CCCeEEEEECCCCC-----EEEEEcC
Confidence            88775 788999999887754333   345666777  888988886       57889999876533     4455555


Q ss_pred             CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC---CCcCceeeEEccCCCEEEEEEccCCCCCCc
Q 004971          509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE---GPWSDTMCNWSPDGEWIAFASDRDNPGSGS  585 (721)
Q Consensus       509 ~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~---~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~  585 (721)
                      +....  ..++++++.|+..+.   +..|++||+.+++.  +..+..   +...+..++|+  ++.|+.++.++      
T Consensus       318 ~~~~v--~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg------  382 (445)
T 2ovr_B          318 HQSLT--SGMELKDNILVSGNA---DSTVKIWDIKTGQC--LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG------  382 (445)
T ss_dssp             CCSCE--EEEEEETTEEEEEET---TSCEEEEETTTCCE--EEEECSTTSCSSCEEEEEEC--SSEEEEEETTS------
T ss_pred             CcccE--EEEEEeCCEEEEEeC---CCeEEEEECCCCcE--EEEEccCCCCCCCEEEEEEC--CCEEEEEeCCC------
Confidence            54333  345567888888876   77899999998875  455543   44456667774  67888888775      


Q ss_pred             eeEEEEecCCCceEEeee----cCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971          586 FEMYLIHPNGTGLRKLIQ----SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       586 ~~i~~~d~~~~~~~~l~~----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                       .|++||+.+++......    ..+.+.+..++|+|+|..|+..+.++...             ..|++||.+.
T Consensus       383 -~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~-------------~~l~v~df~~  442 (445)
T 2ovr_B          383 -TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE-------------TKLLVLDFDV  442 (445)
T ss_dssp             -EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSC-------------CEEEEEECCC
T ss_pred             -eEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCc-------------cEEEEEECCC
Confidence             89999999887655431    12456678899999999888877766421             2488898764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.63  E-value=2.8e-14  Score=151.98  Aligned_cols=279  Identities=11%  Similarity=0.007  Sum_probs=177.5

Q ss_pred             cceecc-CCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEe-----------CCCCCcccCceeecCCCC-EEEE
Q 004971          271 WPCWVD-ESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRV-----------TPPGLHAFTPATSPGNNK-FIAV  337 (721)
Q Consensus       271 ~~~ws~-dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~sp~dG~-~la~  337 (721)
                      ..+|+| |++++++  ...++.+.+|.+......       .....           ..+...+..++|+| ++. .++.
T Consensus        48 ~~~~s~~~~~~l~~--~~~dg~i~iw~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s  117 (408)
T 4a11_B           48 TLDIEPVEGRYMLS--GGSDGVIVLYDLENSSRQ-------SYYTCKAVCSIGRDHPDVHRYSVETVQWYP-HDTGMFTS  117 (408)
T ss_dssp             EEEECTTTCCEEEE--EETTSCEEEEECCCCSSS-------SCEEECEEEEECTTCTTCCSSCEEEEEECT-TCTTCEEE
T ss_pred             EEEEecCCCCEEEE--EcCCCeEEEEECCCCccc-------ceEeccccccccccccccCCCcEEEEEEcc-CCCcEEEE
Confidence            458999 8887764  333789999976543322       11111           12455678889999 654 5555


Q ss_pred             EEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCC---CCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc-
Q 004971          338 ATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD---SSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-  413 (721)
Q Consensus       338 ~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd---g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-  413 (721)
                      ..     .+..|.+||+.+++......   ....+....++|.   +..++....++.         +.++++..+... 
T Consensus       118 ~~-----~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------v~~~d~~~~~~~~  180 (408)
T 4a11_B          118 SS-----FDKTLKVWDTNTLQTADVFN---FEETVYSHHMSPVSTKHCLVAVGTRGPK---------VQLCDLKSGSCSH  180 (408)
T ss_dssp             EE-----TTSEEEEEETTTTEEEEEEE---CSSCEEEEEECSSCSSCCEEEEEESSSS---------EEEEESSSSCCCE
T ss_pred             Ee-----CCCeEEEeeCCCCccceecc---CCCceeeeEeecCCCCCcEEEEEcCCCe---------EEEEeCCCcceee
Confidence            32     34569999999987554433   2445566778774   447776654443         666676554221 


Q ss_pred             -ceecccCCCCceeCcCCCE-EEEE-eCCcEEEEECCCCc--eEEE---------------e--ecCceeeEEcCCCCeE
Q 004971          414 -ISLFRFDGSFPSFSPKGDR-IAFV-EFPGVYVVNSDGSN--RRQV---------------Y--FKNAFSTVWDPVREAV  471 (721)
Q Consensus       414 -~~~~~~~~~~~~~SpDG~~-la~~-~~~~l~v~d~~~g~--~~~l---------------~--~~~~~~~~~spdg~~l  471 (721)
                       +.........++|+|++++ ++.. .++.|.+||+..+.  ...+               .  ...+..+.|+|+|+.|
T Consensus       181 ~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  260 (408)
T 4a11_B          181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL  260 (408)
T ss_dssp             EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred             eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence             1112223445799999996 5555 37889999997654  2222               1  3457789999999999


Q ss_pred             EEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC----CCCCcceE-EccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971          472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN----GKNNAFPS-VSPDGKWIVFRSTRTGYKNLYIMDAEGGE  546 (721)
Q Consensus       472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~----~~~~~~~~-~SpDg~~l~~~s~~~g~~~l~~~d~~~g~  546 (721)
                      +..+       .++.+.+|++....     ....+...    ........ ....+..+++...   +..|++||+.+++
T Consensus       261 ~~~~-------~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~v~d~~~~~  325 (408)
T 4a11_B          261 LTVG-------TDNRMRLWNSSNGE-----NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY---GSTIAVYTVYSGE  325 (408)
T ss_dssp             EEEE-------TTSCEEEEETTTCC-----BCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE---TTEEEEEETTTCC
T ss_pred             EEec-------CCCeEEEEECCCCc-----cceeccccccccccccceeEEecCCCceEEEEec---CCEEEEEECcCCc
Confidence            9886       56789999876533     11111111    11111122 2233445666655   6789999999888


Q ss_pred             ccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE
Q 004971          547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK  600 (721)
Q Consensus       547 ~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~  600 (721)
                      .  +..+..+...+..++|+|||+.|+.++.++       .|++|++.+++...
T Consensus       326 ~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-------~i~iw~~~~~~~~~  370 (408)
T 4a11_B          326 Q--ITMLKGHYKTVDCCVFQSNFQELYSGSRDC-------NILAWVPSLYEPVP  370 (408)
T ss_dssp             E--EEEECCCSSCEEEEEEETTTTEEEEEETTS-------CEEEEEECC-----
T ss_pred             c--eeeeccCCCeEEEEEEcCCCCEEEEECCCC-------eEEEEeCCCCCccC
Confidence            5  666666777788999999999999988875       89999998876543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.62  E-value=1.5e-13  Score=148.84  Aligned_cols=306  Identities=11%  Similarity=0.050  Sum_probs=193.8

Q ss_pred             ccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEecc-CC--cceeccCCeEEEEeccCCCCcEEEEEEe
Q 004971          222 AVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVEN-GG--WPCWVDESTLFFHRKSEEDDWISVYKVI  298 (721)
Q Consensus       222 ~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~-~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~  298 (721)
                      .++++|++|+.++.+            ..|.+|++.+++........ +.  ...|+  +.++++  ...++.+.+|.+.
T Consensus       124 ~~~~~g~~l~sg~~d------------g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s--~~~dg~i~vwd~~  187 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDD------------NTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIIS--GSTDRTLKVWNAE  187 (445)
T ss_dssp             EEEEETTEEEEEETT------------SCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEE--EETTSCEEEEETT
T ss_pred             EEEEcCCEEEEEECC------------CcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEE--EeCCCeEEEEECC
Confidence            577789999987644            46999999888865543322 22  23555  344442  3337899999543


Q ss_pred             cCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEc
Q 004971          299 LPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFIS  378 (721)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~S  378 (721)
                      ...         ....+..+...+..+.+   +++.++...     .+..|.+||+.+++...  ....+...+..+.+ 
T Consensus       188 ~~~---------~~~~~~~h~~~v~~~~~---~~~~l~s~s-----~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~-  247 (445)
T 2ovr_B          188 TGE---------CIHTLYGHTSTVRCMHL---HEKRVVSGS-----RDATLRVWDIETGQCLH--VLMGHVAAVRCVQY-  247 (445)
T ss_dssp             TTE---------EEEEECCCSSCEEEEEE---ETTEEEEEE-----TTSEEEEEESSSCCEEE--EEECCSSCEEEEEE-
T ss_pred             cCc---------EEEEECCCCCcEEEEEe---cCCEEEEEe-----CCCEEEEEECCCCcEEE--EEcCCcccEEEEEE-
Confidence            221         34445555555566666   567777644     34569999999887433  33445566666666 


Q ss_pred             CCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe-e
Q 004971          379 PDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY-F  456 (721)
Q Consensus       379 pdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~-~  456 (721)
                       +++.|+....++.         +.++++..+............-..+..+++.++..+ ++.|.+||+.+++..... .
T Consensus       248 -~~~~l~~~~~dg~---------i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  317 (445)
T 2ovr_B          248 -DGRRVVSGAYDFM---------VKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG  317 (445)
T ss_dssp             -CSSCEEEEETTSC---------EEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             -CCCEEEEEcCCCE---------EEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcC
Confidence             7888887665554         555665443211111111111123334888888875 789999999888754433 2


Q ss_pred             cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc---CCCCCcceEEccCCCEEEEEEeeCC
Q 004971          457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT---NGKNNAFPSVSPDGKWIVFRSTRTG  533 (721)
Q Consensus       457 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~SpDg~~l~~~s~~~g  533 (721)
                      .......++++++.++..+       .++.+.+|++....     ....+..   +...+..++|  ++++|+..+.   
T Consensus       318 ~~~~v~~~~~~~~~l~~~~-------~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~---  380 (445)
T 2ovr_B          318 HQSLTSGMELKDNILVSGN-------ADSTVKIWDIKTGQ-----CLQTLQGPNKHQSAVTCLQF--NKNFVITSSD---  380 (445)
T ss_dssp             CCSCEEEEEEETTEEEEEE-------TTSCEEEEETTTCC-----EEEEECSTTSCSSCEEEEEE--CSSEEEEEET---
T ss_pred             CcccEEEEEEeCCEEEEEe-------CCCeEEEEECCCCc-----EEEEEccCCCCCCCEEEEEE--CCCEEEEEeC---
Confidence            2222334455778888776       57889999875432     4455554   3344555566  5788888886   


Q ss_pred             ceeEEEEECCCCcccceEEC-----cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971          534 YKNLYIMDAEGGEGYGLHRL-----TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       534 ~~~l~~~d~~~g~~~~~~~l-----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      +..|++||+.+++.  +..+     ..+...+..++|+|+|..|++++.++   .....|++||.+.
T Consensus       381 dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg---~~~~~l~v~df~~  442 (445)
T 2ovr_B          381 DGTVKLWDLKTGEF--IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG---TEETKLLVLDFDV  442 (445)
T ss_dssp             TSEEEEEETTTCCE--EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS---SSCCEEEEEECCC
T ss_pred             CCeEEEEECCCCce--eeeeeccccCCCCceEEEEEecCCEEEEEEcccCC---CCccEEEEEECCC
Confidence            78999999998875  4444     23345578899999999998888774   1245699999865

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.62  E-value=6e-15  Score=159.29  Aligned_cols=246  Identities=11%  Similarity=0.066  Sum_probs=161.3

Q ss_pred             CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCC---CceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971          317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVK---NKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS  393 (721)
Q Consensus       317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~t---g~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~  393 (721)
                      .+...+..++|+|.+|++|+...     .++.|.+||+.+   +..........+...+..++|+|+++.|+....++. 
T Consensus        61 ~h~~~V~~~~~s~~~~~~l~s~s-----~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~-  134 (437)
T 3gre_A           61 NEPNSITSSAVSPGETPYLITGS-----DQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQ-  134 (437)
T ss_dssp             TTTSCEEEEEEECSSSCEEEEEE-----TTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSE-
T ss_pred             CCCCceEEEEECCCCCCEEEEec-----CCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCE-
Confidence            44556778889984567777754     445699999876   431111111135677889999999999988766554 


Q ss_pred             CCCCCcceeEEEecc---CCCC-------cceecc-----cCC--CCc--eeCcCCCEEEEEe-CCcEEEEECCCCceEE
Q 004971          394 TREDGNNQLLLENIK---SPLP-------DISLFR-----FDG--SFP--SFSPKGDRIAFVE-FPGVYVVNSDGSNRRQ  453 (721)
Q Consensus       394 ~~~~~~~~l~~~~~~---~~~~-------~~~~~~-----~~~--~~~--~~SpDG~~la~~~-~~~l~v~d~~~g~~~~  453 (721)
                              +.++++.   .+..       .+....     ...  ..+  .+++|++.|+..+ ++.|.+||+.+++...
T Consensus       135 --------i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  206 (437)
T 3gre_A          135 --------IIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ  206 (437)
T ss_dssp             --------EEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred             --------EEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence                    3344332   1100       000000     000  011  2678898888875 7899999998887543


Q ss_pred             Ee-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc-cCCCCCcce----EEccCCC
Q 004971          454 VY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT-TNGKNNAFP----SVSPDGK  523 (721)
Q Consensus       454 l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~----~~SpDg~  523 (721)
                      ..     ...+..++|+|+++.|+..+       .++.+.||++....     ....+. .+...+..+    .|+||++
T Consensus       207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~-------~dg~i~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~s~~~~  274 (437)
T 3gre_A          207 IIENSPRHGAVSSICIDEECCVLILGT-------TRGIIDIWDIRFNV-----LIRSWSFGDHAPITHVEVCQFYGKNSV  274 (437)
T ss_dssp             EEECCGGGCCEEEEEECTTSCEEEEEE-------TTSCEEEEETTTTE-----EEEEEBCTTCEEEEEEEECTTTCTTEE
T ss_pred             EEccCCCCCceEEEEECCCCCEEEEEc-------CCCeEEEEEcCCcc-----EEEEEecCCCCceEEEEeccccCCCcc
Confidence            33     25678999999999999887       57889999876522     344443 333345556    5667888


Q ss_pred             EEEEEEeeCCceeEEEEECCCCcccceEECcC--------------------------CCcCceeeEEccCCCEEEEEEc
Q 004971          524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE--------------------------GPWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       524 ~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~--------------------------~~~~~~~~~~SpDG~~l~~~~~  577 (721)
                      +|+..+.   +..|++||+.+++.  +..+..                          +...+..++|+ ++++|+.++.
T Consensus       275 ~l~s~~~---dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~  348 (437)
T 3gre_A          275 IVVGGSS---KTFLTIWNFVKGHC--QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA  348 (437)
T ss_dssp             EEEEEST---TEEEEEEETTTTEE--EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG
T ss_pred             EEEEEcC---CCcEEEEEcCCCcE--EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC
Confidence            8887776   78899999998874  333321                          22235667888 7788887777


Q ss_pred             cCCCCCCceeEEEEecCCCceEEe
Q 004971          578 RDNPGSGSFEMYLIHPNGTGLRKL  601 (721)
Q Consensus       578 ~~~~~~~~~~i~~~d~~~~~~~~l  601 (721)
                      ++       .|++||+.+++....
T Consensus       349 d~-------~i~~wd~~~~~~~~~  365 (437)
T 3gre_A          349 TS-------SIVMFSLNELSSSKA  365 (437)
T ss_dssp             GT-------EEEEEETTCGGGCEE
T ss_pred             CC-------eEEEEECCCcccceE
Confidence            75       899999988875443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.62  E-value=3e-15  Score=161.70  Aligned_cols=275  Identities=10%  Similarity=0.031  Sum_probs=182.4

Q ss_pred             CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc-cCCCCcccCcEEcC-CCCEEEEEEeeCCCCCCCCcce
Q 004971          324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF-VSPKTHHLNPFISP-DSSRVGYHKCRGGSTREDGNNQ  401 (721)
Q Consensus       324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~-~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~~~~~~~~  401 (721)
                      ...|+| +++.++...           .|+.. ++  .+... ..|...+..++|+| +++.|+..+.++.         
T Consensus        32 ~~~f~~-~~~~~~~~~-----------~w~~~-g~--~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~---------   87 (437)
T 3gre_A           32 YKEFGP-IQEIVRSPN-----------MGNLR-GK--LIATLMENEPNSITSSAVSPGETPYLITGSDQGV---------   87 (437)
T ss_dssp             CGGGCC-CCCCCCCCC-----------GGGCC-CC--EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSE---------
T ss_pred             hhhcCC-ccccccccc-----------ccccc-ce--EEeeeccCCCCceEEEEECCCCCCEEEEecCCce---------
Confidence            456788 888766521           35643 33  22223 45677888999999 9999988775554         


Q ss_pred             eEEEeccC---CC--C-cce-ecccCCCCceeCcCCCEEEEEe-CCcEEEEECC---CCceEEEe-ecCce---------
Q 004971          402 LLLENIKS---PL--P-DIS-LFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSD---GSNRRQVY-FKNAF---------  460 (721)
Q Consensus       402 l~~~~~~~---~~--~-~~~-~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~---~g~~~~l~-~~~~~---------  460 (721)
                      +.++++..   +.  . ... ........++|+|+++.|+..+ ++.|.+||+.   .++..... ...+.         
T Consensus        88 v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  167 (437)
T 3gre_A           88 IKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGK  167 (437)
T ss_dssp             EEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSS
T ss_pred             EEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCccc
Confidence            55555543   21  1 111 1233445689999999998885 7889999984   44432221 11222         


Q ss_pred             -----eeE--EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc--CCCCCcceEEccCCCEEEEEEee
Q 004971          461 -----STV--WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT--NGKNNAFPSVSPDGKWIVFRSTR  531 (721)
Q Consensus       461 -----~~~--~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~SpDg~~l~~~s~~  531 (721)
                           .+.  ++++++.|+..+       .++.+.+|++....     ....+..  +...+..++|+|++++|+..+. 
T Consensus       168 ~~~~~~~~~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~-----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-  234 (437)
T 3gre_A          168 NEYAVRMRAFVNEEKSLLVALT-------NLSRVIIFDIRTLE-----RLQIIENSPRHGAVSSICIDEECCVLILGTT-  234 (437)
T ss_dssp             CCCEEEEEEEECSSCEEEEEEE-------TTSEEEEEETTTCC-----EEEEEECCGGGCCEEEEEECTTSCEEEEEET-
T ss_pred             ccCceEEEEEEcCCCCEEEEEe-------CCCeEEEEeCCCCe-----eeEEEccCCCCCceEEEEECCCCCEEEEEcC-
Confidence                 222  667898888886       57888998875533     4555655  4567888999999999998887 


Q ss_pred             CCceeEEEEECCCCcccceEECc-CCCcCceee----EEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC-
Q 004971          532 TGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMC----NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG-  605 (721)
Q Consensus       532 ~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~----~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-  605 (721)
                        +..|++||+.+++.  +..+. .+...+..+    .|+||++.|+.++.++       .|++||+.+++........ 
T Consensus       235 --dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~  303 (437)
T 3gre_A          235 --RGIIDIWDIRFNVL--IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT-------FLTIWNFVKGHCQYAFINSD  303 (437)
T ss_dssp             --TSCEEEEETTTTEE--EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE-------EEEEEETTTTEEEEEEESSS
T ss_pred             --CCeEEEEEcCCccE--EEEEecCCCCceEEEEeccccCCCccEEEEEcCCC-------cEEEEEcCCCcEEEEEEcCC
Confidence              78899999998774  44443 444456677    4556788888777664       8999999988765544320 


Q ss_pred             ------------------------CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EE
Q 004971          606 ------------------------SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL-KR  660 (721)
Q Consensus       606 ------------------------~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~  660 (721)
                                              +...+..++|+ ++++|+..+.++                 .|++||+.+++. ..
T Consensus       304 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~-----------------~i~~wd~~~~~~~~~  365 (437)
T 3gre_A          304 EQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATS-----------------SIVMFSLNELSSSKA  365 (437)
T ss_dssp             SCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGT-----------------EEEEEETTCGGGCEE
T ss_pred             CCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCC-----------------eEEEEECCCcccceE
Confidence                                    22335667888 677776655554                 499999988764 45


Q ss_pred             eccC
Q 004971          661 LTQN  664 (721)
Q Consensus       661 lt~~  664 (721)
                      +..+
T Consensus       366 ~~~~  369 (437)
T 3gre_A          366 VISP  369 (437)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            5543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.62  E-value=3.7e-14  Score=148.68  Aligned_cols=267  Identities=11%  Similarity=0.033  Sum_probs=179.1

Q ss_pred             cceeccC---CeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCee
Q 004971          271 WPCWVDE---STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYR  347 (721)
Q Consensus       271 ~~~ws~d---g~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~  347 (721)
                      ..+|+|+   |+++++  ...++.+.+|.+......       ....+..+...+..++|+| ++++|+...     .+.
T Consensus        44 ~~~~~~~~~~g~~l~~--~~~dg~i~iw~~~~~~~~-------~~~~~~~h~~~v~~~~~~~-~~~~l~s~~-----~dg  108 (368)
T 3mmy_A           44 CLSFSPPTLPGNFLIA--GSWANDVRCWEVQDSGQT-------IPKAQQMHTGPVLDVCWSD-DGSKVFTAS-----CDK  108 (368)
T ss_dssp             EEEECCTTSSSEEEEE--EETTSEEEEEEECTTSCE-------EEEEEEECSSCEEEEEECT-TSSEEEEEE-----TTS
T ss_pred             EEEEcCCCCCceEEEE--ECCCCcEEEEEcCCCCce-------eEEEeccccCCEEEEEECc-CCCEEEEEc-----CCC
Confidence            3479998   576663  334789999976543321       2244555666788999999 999998754     345


Q ss_pred             eEEEEECCCCceEEeecccCCCCcccCcEE--cCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCce
Q 004971          348 HIELFDLVKNKFIELTRFVSPKTHHLNPFI--SPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPS  425 (721)
Q Consensus       348 ~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~--Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  425 (721)
                      .|.+||+.+++...+.   .+...+..+.|  +|+++.|+....++.         +.++++..+.. +...........
T Consensus       109 ~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~---------i~vwd~~~~~~-~~~~~~~~~~~~  175 (368)
T 3mmy_A          109 TAKMWDLSSNQAIQIA---QHDAPVKTIHWIKAPNYSCVMTGSWDKT---------LKFWDTRSSNP-MMVLQLPERCYC  175 (368)
T ss_dssp             EEEEEETTTTEEEEEE---ECSSCEEEEEEEECSSCEEEEEEETTSE---------EEEECSSCSSC-SEEEECSSCEEE
T ss_pred             cEEEEEcCCCCceeec---cccCceEEEEEEeCCCCCEEEEccCCCc---------EEEEECCCCcE-EEEEecCCCceE
Confidence            6999999998755543   35677888899  999988887665443         67777665432 222222222233


Q ss_pred             eCcCCCEEEEE-eCCcEEEEECCCCceEEEe-----ecCceeeEEcCCCCe----EEEEecCCCCCCCCCcEEEEEEEcc
Q 004971          426 FSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY-----FKNAFSTVWDPVREA----VVYTSGGPEFASESSEVDIISINVD  495 (721)
Q Consensus       426 ~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~-----~~~~~~~~~spdg~~----la~~~~~~~~~~~~~~~~i~~~~~~  495 (721)
                      +.+.+..++.. .++.+.+|++.........     ........+.++...    ++..+       .++.+.+|+++..
T Consensus       176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~dg~i~i~~~~~~  248 (368)
T 3mmy_A          176 ADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS-------IEGRVAIHYINPP  248 (368)
T ss_dssp             EEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE-------TTSEEEEEESSCS
T ss_pred             EEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec-------CCCcEEEEecCCC
Confidence            44444455555 5788999999876533222     223344555554443    66665       5788999988654


Q ss_pred             CCCCccceEEcccCCC------------CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceee
Q 004971          496 DVDGVSAVRRLTTNGK------------NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC  563 (721)
Q Consensus       496 ~~~~~~~~~~l~~~~~------------~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~  563 (721)
                      ..  ......+..+..            .+..++|+|||++|+..+.   +..|++||+.+++.  +..+..+...+..+
T Consensus       249 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~---dg~i~iwd~~~~~~--~~~~~~~~~~v~~~  321 (368)
T 3mmy_A          249 NP--AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS---DGRFSFWDKDARTK--LKTSEQLDQPISAC  321 (368)
T ss_dssp             CH--HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET---TSCEEEEETTTTEE--EEECCCCSSCEEEE
T ss_pred             Cc--cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc---CCeEEEEECCCCcE--EEEecCCCCCceEE
Confidence            21  012333433332            4778899999999998887   78899999998875  66777767778999


Q ss_pred             EEccCCCEEEEEEccC
Q 004971          564 NWSPDGEWIAFASDRD  579 (721)
Q Consensus       564 ~~SpDG~~l~~~~~~~  579 (721)
                      +|+|||++|+.++.++
T Consensus       322 ~~s~~g~~l~~~s~d~  337 (368)
T 3mmy_A          322 CFNHNGNIFAYASSYD  337 (368)
T ss_dssp             EECTTSSCEEEEECCC
T ss_pred             EECCCCCeEEEEeccc
Confidence            9999999999998764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.61  E-value=3.5e-14  Score=147.35  Aligned_cols=251  Identities=12%  Similarity=0.056  Sum_probs=171.0

Q ss_pred             eCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce--EEeecccCCCCcccCcEEcC--CCCEEEEEEee
Q 004971          315 VTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF--IELTRFVSPKTHHLNPFISP--DSSRVGYHKCR  390 (721)
Q Consensus       315 ~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~--~~l~~~~~~~~~~~~~~~Sp--dg~~l~~~~~~  390 (721)
                      +..|...+..++|+| +|++|+...     .++.|.+||+.++..  ..+.....+...+..++|+|  |++.|+....+
T Consensus         7 ~~gH~~~v~~~~~~~-~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d   80 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDF-YGRHVATCS-----SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD   80 (351)
T ss_dssp             ECCCSSCEEEEEECS-SSSEEEEEE-----TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             CcccccceeEEEEcC-CCCEEEEee-----CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence            345666788999999 999988854     345699999987632  23444455677888999999  69999887765


Q ss_pred             CCCCCCCCcceeEEEeccCCCC--------ccee---cccCCCCceeCcC--CCEEEEEe-CCcEEEEECCCCceEE---
Q 004971          391 GGSTREDGNNQLLLENIKSPLP--------DISL---FRFDGSFPSFSPK--GDRIAFVE-FPGVYVVNSDGSNRRQ---  453 (721)
Q Consensus       391 ~~~~~~~~~~~l~~~~~~~~~~--------~~~~---~~~~~~~~~~SpD--G~~la~~~-~~~l~v~d~~~g~~~~---  453 (721)
                      +.         +.++++..+..        .+..   .......++|+|+  ++.|+..+ ++.|.+||+.+++...   
T Consensus        81 g~---------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  151 (351)
T 3f3f_A           81 KT---------VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWT  151 (351)
T ss_dssp             SC---------EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred             Ce---------EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccc
Confidence            55         45555544311        1111   1222345789999  99888885 7889999998765211   


Q ss_pred             ----Ee---------ecCceeeEEcCC---CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceE
Q 004971          454 ----VY---------FKNAFSTVWDPV---REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPS  517 (721)
Q Consensus       454 ----l~---------~~~~~~~~~spd---g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~  517 (721)
                          +.         ...+..+.|+|+   ++.+++.+       .++.+ +|.....+.  ......+..+...+..++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-------~~~~~-~~~~~~~~~--~~~~~~~~~h~~~i~~~~  221 (351)
T 3f3f_A          152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA-------LEQAI-IYQRGKDGK--LHVAAKLPGHKSLIRSIS  221 (351)
T ss_dssp             EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE-------TTEEE-EEEECTTSC--EEEEEECCCCCSCEEEEE
T ss_pred             ccccccccccccCCcccceeEEEeccCCCCCcEEEEec-------CCCcE-EEEccCCCc--eeeeeecCCCCcceeEEE
Confidence                10         235678999997   88888876       33444 443333221  112445555667788899


Q ss_pred             EccCC----CEEEEEEeeCCceeEEEEECCCCcc--------------------------------------------cc
Q 004971          518 VSPDG----KWIVFRSTRTGYKNLYIMDAEGGEG--------------------------------------------YG  549 (721)
Q Consensus       518 ~SpDg----~~l~~~s~~~g~~~l~~~d~~~g~~--------------------------------------------~~  549 (721)
                      |+|++    +.|+..+.   +..|++||+.++..                                            ..
T Consensus       222 ~~p~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (351)
T 3f3f_A          222 WAPSIGRWYQLIATGCK---DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL  298 (351)
T ss_dssp             ECCCSSCSSEEEEEEET---TSCEEEEEEEECC---------------------------------------CCSEEEEE
T ss_pred             ECCCCCCcceEEEEEcC---CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccE
Confidence            99998    67777775   67899999876421                                            12


Q ss_pred             eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE
Q 004971          550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK  600 (721)
Q Consensus       550 ~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~  600 (721)
                      +..+..+...+..++|+|||+.|+.++.++       .|++|++.+++..+
T Consensus       299 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-------~v~iw~~~~~~~~~  342 (351)
T 3f3f_A          299 LSEHDDHNGEVWSVSWNLTGTILSSAGDDG-------KVRLWKATYSNEFK  342 (351)
T ss_dssp             EEEECTTSSCEEEEEECSSSCCEEEEETTS-------CEEEEEECTTSCEE
T ss_pred             EEEEecccccEEEEEEcCCCCEEEEecCCC-------cEEEEecCcCcchh
Confidence            334445566788999999999999999875       89999998875443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.61  E-value=4.1e-13  Score=140.68  Aligned_cols=308  Identities=12%  Similarity=0.073  Sum_probs=175.6

Q ss_pred             CCCEEEEEEecC-CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCC-CCcceeEEEecc
Q 004971          331 NNKFIAVATRRP-TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTRE-DGNNQLLLENIK  408 (721)
Q Consensus       331 dG~~la~~~~~~-g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~-~~~~~l~~~~~~  408 (721)
                      ++++++...... ...+..|++||.++++.....  .. .... .+++||||++|+.+........+ .....+.++++.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i--~~-g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~   89 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV--PT-AFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD   89 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE--EC-CEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEe--cC-CCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence            777766543211 112457999999998754322  21 2233 78999999999987652110000 000235666665


Q ss_pred             CCCC--cceec------ccCCCCceeCcCCCEEEEEe---CCcEEEEECCCCceEE--EeecCceeeEEcCCCCeEEEEe
Q 004971          409 SPLP--DISLF------RFDGSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNRRQ--VYFKNAFSTVWDPVREAVVYTS  475 (721)
Q Consensus       409 ~~~~--~~~~~------~~~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~~~--l~~~~~~~~~~spdg~~la~~~  475 (721)
                      +...  .+...      ......+++||||++|+...   ...|.++|+++++...  +.......+.+.|++...++..
T Consensus        90 t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~  169 (361)
T 2oiz_A           90 KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTI  169 (361)
T ss_dssp             TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEE
T ss_pred             CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEE
Confidence            4321  11111      11244679999999998874   4679999999886533  2222222244566664333332


Q ss_pred             cCCCCCCCCCcEEEEEEEccCCCCccceEEc-----ccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccce
Q 004971          476 GGPEFASESSEVDIISINVDDVDGVSAVRRL-----TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL  550 (721)
Q Consensus       476 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~  550 (721)
                      .      .++.+.++.++.++.    .....     ...........++|||+.+++.+.   ...++++|+.++.....
T Consensus       170 ~------~dg~~~~v~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~v~v~d~~~~~~~~~  236 (361)
T 2oiz_A          170 C------GDGGLLTINLGEDGK----VASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSY---YGNVYSADFSGDEVKVD  236 (361)
T ss_dssp             E------TTSSEEEEEECTTSS----EEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBT---TSEEEEEECSSSSCEEE
T ss_pred             C------CCCcEEEEEECCCCc----EeeeccccceEcCCCCceEEEecccCCEEEEEeC---CCeEEEEEecCCCceec
Confidence            1      345555555543221    11011     111112334566899999888875   45799999976653212


Q ss_pred             EECc--C------C--CcCceeeEEccCCCEEEEEEc-cCCC---CCCceeEEEEecCCCceEEeeecCCCCCcCCeEEC
Q 004971          551 HRLT--E------G--PWSDTMCNWSPDGEWIAFASD-RDNP---GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFS  616 (721)
Q Consensus       551 ~~l~--~------~--~~~~~~~~~SpDG~~l~~~~~-~~~~---~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~S  616 (721)
                      ..+.  .      +  ......++|+|||+++++... +...   ......|++||+.+++.......  .. ...++||
T Consensus       237 ~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~--~~-p~~ia~s  313 (361)
T 2oiz_A          237 GPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG--RD-ALSMTID  313 (361)
T ss_dssp             EEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC--TT-CCEEEEE
T ss_pred             ccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec--CC-eeEEEEC
Confidence            2211  0      0  111124789999999888764 1100   01134899999999887665543  33 8899999


Q ss_pred             CCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC--CeE-EeccCCCCCCCceecCC
Q 004971          617 PDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS--DLK-RLTQNSFEDGTPAWGPR  676 (721)
Q Consensus       617 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~-~lt~~~~~~~~~~~sp~  676 (721)
                      |||++|+.+. . +                .|.+||++++  ++. ++...+......+++|+
T Consensus       314 pdg~~l~v~n-~-~----------------~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~  358 (361)
T 2oiz_A          314 QQRNLMLTLD-G-G----------------NVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV  358 (361)
T ss_dssp             TTTTEEEEEC-S-S----------------CEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred             CCCCEEEEeC-C-C----------------eEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence            9999877554 3 2                3999999998  543 33333433345566664

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.61  E-value=2.4e-13  Score=141.55  Aligned_cols=287  Identities=13%  Similarity=0.052  Sum_probs=162.1

Q ss_pred             ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCC-CcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPG-LHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      ++++++++++++.  ..++.+.+|..  ..+.       ....+.... .....++|+| ||+++++...    .+..|+
T Consensus         5 ~~~~~~~~~~v~~--~~~~~v~~~d~--~~~~-------~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~----~~~~i~   68 (349)
T 1jmx_B            5 PALKAGHEYMIVT--NYPNNLHVVDV--ASDT-------VYKSCVMPDKFGPGTAMMAP-DNRTAYVLNN----HYGDIY   68 (349)
T ss_dssp             CCCCTTCEEEEEE--ETTTEEEEEET--TTTE-------EEEEEECSSCCSSCEEEECT-TSSEEEEEET----TTTEEE
T ss_pred             ccccCCCEEEEEe--CCCCeEEEEEC--CCCc-------EEEEEecCCCCCCceeEECC-CCCEEEEEeC----CCCcEE
Confidence            4667777777643  22566666632  2221       222222221 2456789999 9998777542    234599


Q ss_pred             EEECCCCceEEeecccCC----CCcccCcEEcCCCCEEEEEEeeCCCC---CCCCcceeEEEeccCCC--Cccee--ccc
Q 004971          351 LFDLVKNKFIELTRFVSP----KTHHLNPFISPDSSRVGYHKCRGGST---REDGNNQLLLENIKSPL--PDISL--FRF  419 (721)
Q Consensus       351 l~dl~tg~~~~l~~~~~~----~~~~~~~~~Spdg~~l~~~~~~~~~~---~~~~~~~l~~~~~~~~~--~~~~~--~~~  419 (721)
                      +||+++++..........    ......++|+|||++|++........   .......++++++.++.  ..+..  ...
T Consensus        69 ~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~  148 (349)
T 1jmx_B           69 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR  148 (349)
T ss_dssp             EEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS
T ss_pred             EEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC
Confidence            999998875433221110    12256789999999999877540000   00001357778776531  11111  122


Q ss_pred             CCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-ecC--------------------------ceeeEEcCCCCeEE
Q 004971          420 DGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-FKN--------------------------AFSTVWDPVREAVV  472 (721)
Q Consensus       420 ~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-~~~--------------------------~~~~~~spdg~~la  472 (721)
                      ....++|+|||+ +++ ....|++||+.+++..... .+.                          ...+.+++|+....
T Consensus       149 ~~~~~~~s~dg~-l~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  226 (349)
T 1jmx_B          149 QVYLMRAADDGS-LYV-AGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP  226 (349)
T ss_dssp             SCCCEEECTTSC-EEE-ESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------
T ss_pred             cccceeECCCCc-EEE-ccCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCc
Confidence            334567999998 555 4556999999888755433 111                          11233333332110


Q ss_pred             EEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc--cCCCCCcceEEcc-CCCEEEEEEeeCCceeEEEEECCCCcccc
Q 004971          473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT--TNGKNNAFPSVSP-DGKWIVFRSTRTGYKNLYIMDAEGGEGYG  549 (721)
Q Consensus       473 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~Sp-Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~  549 (721)
                      .        .......++.++..++    ..+.+.  ........++|+| ||++|++.     ...|++||+.+++.  
T Consensus       227 ~--------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~~~--  287 (349)
T 1jmx_B          227 A--------TADLLYGYLSVDLKTG----KTHTQEFADLTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRKL--  287 (349)
T ss_dssp             C--------CCEEEEEEEEEETTTC----CEEEEEEEECSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTEE--
T ss_pred             c--------ccccceeEEEEeccCC----cEEecccccCCCcceeeEecCCCCCEEEEE-----cCeEEEEECccCeE--
Confidence            0        0011122223444332    222222  2223556789999 99998877     35899999998874  


Q ss_pred             eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971          550 LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ  603 (721)
Q Consensus       550 ~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  603 (721)
                      +..+..+ .....++|+|||++|++...+       ..|++||+++++......
T Consensus       288 ~~~~~~~-~~~~~~~~s~dg~~l~~~~~~-------~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          288 IKAANLD-HTYYCVAFDKKGDKLYLGGTF-------NDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             EEEEECS-SCCCEEEECSSSSCEEEESBS-------SEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCC-CCccceEECCCCCEEEEecCC-------CeEEEEeccccceeeeee
Confidence            3333322 334689999999999885443       389999999887655443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.60  E-value=2.6e-13  Score=142.74  Aligned_cols=234  Identities=11%  Similarity=0.060  Sum_probs=142.7

Q ss_pred             CCCceeCcCCCEEEEEeCCcEEEEECC-CCceEEEe--e--cCceeeEEcCCCCeE-EEEec-CCC--CCC----CCCcE
Q 004971          421 GSFPSFSPKGDRIAFVEFPGVYVVNSD-GSNRRQVY--F--KNAFSTVWDPVREAV-VYTSG-GPE--FAS----ESSEV  487 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~~~~~l~v~d~~-~g~~~~l~--~--~~~~~~~~spdg~~l-a~~~~-~~~--~~~----~~~~~  487 (721)
                      ...++|||||++|+..+...+.+|+++ +++...+.  .  +....++|+|||++| +++.+ +..  +..    .++.+
T Consensus        42 ~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v  121 (365)
T 1jof_A           42 ISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG  121 (365)
T ss_dssp             CSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred             CcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceE
Confidence            445789999999888765589999987 77655443  1  345678999999974 33332 000  000    35678


Q ss_pred             EEEEEEccCCCCccceEEccc----CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC-CCcccceEECc--CCCcCc
Q 004971          488 DIISINVDDVDGVSAVRRLTT----NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE-GGEGYGLHRLT--EGPWSD  560 (721)
Q Consensus       488 ~i~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~-~g~~~~~~~l~--~~~~~~  560 (721)
                      .+|.++.++.    ....+..    .......++|||||++|++...  +...|++|+++ +|+...+..+.  .+....
T Consensus       122 ~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~--~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p  195 (365)
T 1jof_A          122 NVFSVSETGK----LEKNVQNYEYQENTGIHGMVFDPTETYLYSADL--TANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             EEEEECTTCC----EEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             EEEccCCCCc----CcceEeeEEeCCCCcceEEEECCCCCEEEEEcC--CCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence            8898875542    2222321    2345677899999999876653  24689999998 77642222232  112345


Q ss_pred             eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE----eeecCCC--C---------CcCCeE-ECCCCCEEEE
Q 004971          561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK----LIQSGSA--G---------RANHPY-FSPDGKSIVF  624 (721)
Q Consensus       561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~----l~~~~~~--~---------~~~~~~-~SpDG~~l~~  624 (721)
                      ..++|||||++|++.....    +...+|.++..+++...    +......  +         ....++ |||||++|+.
T Consensus       196 ~~~~~spdg~~l~v~~~~~----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v  271 (365)
T 1jof_A          196 RWVAMHPTGNYLYALMEAG----NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             EEEEECTTSSEEEEEETTT----TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             CEeEECCCCCEEEEEECCC----CeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence            7889999999998887542    32344444554665431    2111011  1         355688 9999999976


Q ss_pred             EEecCCCcCCCCCCCCCCCCCccEEEEEcC-CCCeEEe----ccCCCCCCCceecC
Q 004971          625 TSDYGGISAEPISTPHQYQPYGEIFKIKLD-GSDLKRL----TQNSFEDGTPAWGP  675 (721)
Q Consensus       625 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l----t~~~~~~~~~~~sp  675 (721)
                      +......           ...+.|.+|+++ +++.+.+    ..........+|+|
T Consensus       272 ~~~~~~~-----------~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp  316 (365)
T 1jof_A          272 SSRANKF-----------ELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP  316 (365)
T ss_dssp             EEEESST-----------TSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred             ECCCCCC-----------CCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecC
Confidence            6543320           001248888875 5666542    22333456788898

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.60  E-value=5e-14  Score=146.84  Aligned_cols=261  Identities=10%  Similarity=0.022  Sum_probs=163.2

Q ss_pred             eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEE
Q 004971          326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLE  405 (721)
Q Consensus       326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~  405 (721)
                      .+.+ |+..++...     .++.|++||+.+++......    ...+..+.++|+   ++..+.++....+.....+.+.
T Consensus        43 ~~~~-d~~~l~sg~-----~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~  109 (343)
T 3lrv_A           43 SMYY-DKWVCMCRC-----EDGALHFTQLKDSKTITTIT----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL  109 (343)
T ss_dssp             SSSE-EEEEEEEEE-----ETTEEEEEEESSSSCEEEEE----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE
T ss_pred             hhcC-CCCEEEEEC-----CCCcEEEEECCCCcEEEEEe----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEe
Confidence            3455 777777644     44569999999887433221    233455667776   4443333221111111122223


Q ss_pred             eccCCCCcceecc----cCCCCceeCc--CCCEEEEEe-CCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeEEEE
Q 004971          406 NIKSPLPDISLFR----FDGSFPSFSP--KGDRIAFVE-FPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVYT  474 (721)
Q Consensus       406 ~~~~~~~~~~~~~----~~~~~~~~Sp--DG~~la~~~-~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~~  474 (721)
                      ++.... .+....    .....++|+|  +|++++..+ ++.|.+||+.+++...+.    ...+..++|+|||+.|+..
T Consensus       110 ~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg  188 (343)
T 3lrv_A          110 DSKTNK-VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALY  188 (343)
T ss_dssp             ETTTCC-EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred             ecCCcc-eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence            333321 011111    2244578999  999998875 789999999988875544    3357899999999999987


Q ss_pred             ecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC
Q 004971          475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL  553 (721)
Q Consensus       475 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l  553 (721)
                      +       .++.++||++.....    ....+.. +...+..++|+|||++|+..++   + .|.+||+.+++.  +..+
T Consensus       189 ~-------~dg~i~iwd~~~~~~----~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~---~-~v~iwd~~~~~~--~~~~  251 (343)
T 3lrv_A          189 S-------PDGILDVYNLSSPDQ----ASSRFPVDEEAKIKEVKFADNGYWMVVECD---Q-TVVCFDLRKDVG--TLAY  251 (343)
T ss_dssp             C-------TTSCEEEEESSCTTS----CCEECCCCTTSCEEEEEECTTSSEEEEEES---S-BEEEEETTSSTT--CBSS
T ss_pred             c-------CCCEEEEEECCCCCC----CccEEeccCCCCEEEEEEeCCCCEEEEEeC---C-eEEEEEcCCCCc--ceee
Confidence            5       578999999876542    2256666 6678889999999999998884   3 899999998764  2223


Q ss_pred             cC---CCcCce--eeEEccCCCEEEEEEc-cCCCCCCceeEEEEecCCCce-EEeeecCCCCCcCCeEECC---CCCEEE
Q 004971          554 TE---GPWSDT--MCNWSPDGEWIAFASD-RDNPGSGSFEMYLIHPNGTGL-RKLIQSGSAGRANHPYFSP---DGKSIV  623 (721)
Q Consensus       554 ~~---~~~~~~--~~~~SpDG~~l~~~~~-~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~Sp---DG~~l~  623 (721)
                      ..   +...+.  .++|+|+|++|+.++. +.       .|.+|++..+.. ...      ..+..+.|++   +++.|+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~-------~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~  318 (343)
T 3lrv_A          252 PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN-------SLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMD  318 (343)
T ss_dssp             CCCBC-----CCEEEEECTTSSEEEEEETTTT-------EEEEEEECTTTCSEEE------EEEEECCC----CCCCEEE
T ss_pred             cccccccccccceEEEECCCCCEEEEecCCCC-------cEEEEEEcccccceEe------cCceeEecCccccccceeE
Confidence            22   222222  4999999999998876 43       688887755431 111      1233456677   778887


Q ss_pred             EEEecCC
Q 004971          624 FTSDYGG  630 (721)
Q Consensus       624 ~~~~~~~  630 (721)
                      +.+.++.
T Consensus       319 ~~~~d~~  325 (343)
T 3lrv_A          319 VVCGDGG  325 (343)
T ss_dssp             EEEETTE
T ss_pred             EEecCCc
Confidence            7777653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.59  E-value=2.4e-14  Score=165.56  Aligned_cols=249  Identities=11%  Similarity=0.095  Sum_probs=171.4

Q ss_pred             CCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971          316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR  395 (721)
Q Consensus       316 ~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~  395 (721)
                      ..|...+..++|+| +|++|+...     .++.|.+||+.++....+.....|...+..                     
T Consensus         6 ~gH~~~V~~l~~s~-dg~~latg~-----~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~---------------------   58 (753)
T 3jro_A            6 NAHNELIHDAVLDY-YGKRLATCS-----SDKTIKIFEVEGETHKLIDTLTGHEGPVWR---------------------   58 (753)
T ss_dssp             --CCCCEEEECCCS-SSCCEEEEE-----TTTEEEEEEEETTEEEEEEEECCCSSCEEE---------------------
T ss_pred             ccCcceeEEEEECC-CCCeEEEEE-----CCCcEEEEecCCCCCccceeccCCcCceEE---------------------
Confidence            34555678899999 999888754     345699999875443333322223333333                     


Q ss_pred             CCCcceeEEEeccCCCCcceecccCCCCceeCcC--CCEEEEEe-CCcEEEEECCCCceEEEe-----ecCceeeEEcCC
Q 004971          396 EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPK--GDRIAFVE-FPGVYVVNSDGSNRRQVY-----FKNAFSTVWDPV  467 (721)
Q Consensus       396 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpD--G~~la~~~-~~~l~v~d~~~g~~~~l~-----~~~~~~~~~spd  467 (721)
                                                  ++|+|+  |+.|+..+ ++.|.+||+.+++...+.     ...+..+.|+|+
T Consensus        59 ----------------------------l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~  110 (753)
T 3jro_A           59 ----------------------------VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH  110 (753)
T ss_dssp             ----------------------------EEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCG
T ss_pred             ----------------------------EEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCC
Confidence                                        355554  55555553 556777777766522222     456788999999


Q ss_pred             --CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc-------------CCCEEEEEEeeC
Q 004971          468 --REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP-------------DGKWIVFRSTRT  532 (721)
Q Consensus       468 --g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp-------------Dg~~l~~~s~~~  532 (721)
                        ++.+++++       .++.+.+|++.....   .....+..+...+..+.|+|             |++.|++.+.  
T Consensus       111 ~~~~~l~sgs-------~dg~I~vwdl~~~~~---~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~--  178 (753)
T 3jro_A          111 EYGPLLLVAS-------SDGKVSVVEFKENGT---TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA--  178 (753)
T ss_dssp             GGCSEEEEEE-------TTSEEEEEECCSSSC---CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEET--
T ss_pred             CCCCEEEEEe-------CCCcEEEEEeecCCC---cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEEC--
Confidence              99999886       578999999876532   23445556667788899999             6899998887  


Q ss_pred             CceeEEEEECCCCcc--cceEECcCCCcCceeeEEccC---CCEEEEEEccCCCCCCceeEEEEecCCCceE---Ee-ee
Q 004971          533 GYKNLYIMDAEGGEG--YGLHRLTEGPWSDTMCNWSPD---GEWIAFASDRDNPGSGSFEMYLIHPNGTGLR---KL-IQ  603 (721)
Q Consensus       533 g~~~l~~~d~~~g~~--~~~~~l~~~~~~~~~~~~SpD---G~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~---~l-~~  603 (721)
                       +..|++||+.++..  .....+..+...+..++|+|+   |+.|+.++.++       .|++||+.+++..   .+ ..
T Consensus       179 -dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg-------~I~iwd~~~~~~~~~~~~~~~  250 (753)
T 3jro_A          179 -DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-------TCIIWTQDNEQGPWKKTLLKE  250 (753)
T ss_dssp             -TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS-------CEEEEEESSSSSCCBCCBSSS
T ss_pred             -CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC-------EEEEecCCCCCCcceeEEecc
Confidence             77899999987642  123445566677889999999   88888888775       7999999876421   11 11


Q ss_pred             cCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971          604 SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       604 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~  656 (721)
                      ..+...+..++|+|||++|+..+.++                 .|++|++..+
T Consensus       251 ~~~~~~v~~l~~spdg~~l~s~s~Dg-----------------~I~vwd~~~~  286 (753)
T 3jro_A          251 EKFPDVLWRASWSLSGNVLALSGGDN-----------------KVTLWKENLE  286 (753)
T ss_dssp             SCCSSCCCCEEECTTTCCEEEECSSS-----------------CEECCBCCSS
T ss_pred             CCCCCceEEEEEcCCCCEEEEEcCCC-----------------EEEEEecCCC
Confidence            12556778899999999998776654                 3888887743

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.59  E-value=6.8e-13  Score=139.01  Aligned_cols=265  Identities=10%  Similarity=0.048  Sum_probs=157.3

Q ss_pred             CceeecCCCCEEEEEEec-----CCCCeeeEEEEECCCCceEEeeccc-C---CCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971          324 TPATSPGNNKFIAVATRR-----PTSSYRHIELFDLVKNKFIELTRFV-S---PKTHHLNPFISPDSSRVGYHKCRGGST  394 (721)
Q Consensus       324 ~~~~sp~dG~~la~~~~~-----~g~~~~~l~l~dl~tg~~~~l~~~~-~---~~~~~~~~~~Spdg~~l~~~~~~~~~~  394 (721)
                      .+++|| ||++++.....     .+..+..|.+||+.+++........ .   .......+++||||++|+.......  
T Consensus        54 ~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~--  130 (361)
T 2oiz_A           54 HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPA--  130 (361)
T ss_dssp             EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSS--
T ss_pred             ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCC--
Confidence            789999 99998876531     2334567999999987753322111 0   1234567899999999998765433  


Q ss_pred             CCCCcceeEEEeccCCCCccee-cccCCC-CceeCcCCCE-EE-EEeCCcEEEEECCC-CceE-EE-----e--ecCcee
Q 004971          395 REDGNNQLLLENIKSPLPDISL-FRFDGS-FPSFSPKGDR-IA-FVEFPGVYVVNSDG-SNRR-QV-----Y--FKNAFS  461 (721)
Q Consensus       395 ~~~~~~~l~~~~~~~~~~~~~~-~~~~~~-~~~~SpDG~~-la-~~~~~~l~v~d~~~-g~~~-~l-----~--~~~~~~  461 (721)
                           ..+.++++.... .+.. ...... ...+.|++.. ++ +..++.+..++++. ++.. ..     .  ......
T Consensus       131 -----~~v~v~d~~~~~-~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~  204 (361)
T 2oiz_A          131 -----TSIGIVDVAKGD-YVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIF  204 (361)
T ss_dssp             -----EEEEEEETTTTE-EEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBC
T ss_pred             -----CeEEEEECCCCc-EEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceE
Confidence                 356777776542 1111 111111 1235565532 22 22455666666643 4332 11     1  112223


Q ss_pred             eEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc--c-----C---CCCCcceEEccCCCEEEEEEee
Q 004971          462 TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT--T-----N---GKNNAFPSVSPDGKWIVFRSTR  531 (721)
Q Consensus       462 ~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~--~-----~---~~~~~~~~~SpDg~~l~~~s~~  531 (721)
                      ..++||++.+++.+       .++.  ++.++...... .....+.  .     .   ......++++||++++++....
T Consensus       205 ~~~~~~g~~~~~~~-------~~~~--v~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~  274 (361)
T 2oiz_A          205 IAPALDKDKAHFVS-------YYGN--VYSADFSGDEV-KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHP  274 (361)
T ss_dssp             SCCEECSSEEEEEB-------TTSE--EEEEECSSSSC-EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEES
T ss_pred             EEecccCCEEEEEe-------CCCe--EEEEEecCCCc-eecccccccCccccccccccCCeeEEEEecCCCeEEEEEcc
Confidence            45578888888876       2344  44455433200 0011111  0     0   1122347999999999887641


Q ss_pred             C--------CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC--ceEEe
Q 004971          532 T--------GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT--GLRKL  601 (721)
Q Consensus       532 ~--------g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~--~~~~l  601 (721)
                      +        ....|++||+++++.  +..+..+.  ...++|||||++|+.+.. .       .|.+||++++  +....
T Consensus       275 ~~~~~~~~~~~~~v~viD~~t~~~--v~~i~~~~--p~~ia~spdg~~l~v~n~-~-------~v~v~D~~t~~l~~~~~  342 (361)
T 2oiz_A          275 DGKEGTHKFPAAEIWVMDTKTKQR--VARIPGRD--ALSMTIDQQRNLMLTLDG-G-------NVNVYDISQPEPKLLRT  342 (361)
T ss_dssp             SCCTTCTTCCCSEEEEEETTTTEE--EEEEECTT--CCEEEEETTTTEEEEECS-S-------CEEEEECSSSSCEEEEE
T ss_pred             CCCcccccCCCceEEEEECCCCcE--EEEEecCC--eeEEEECCCCCEEEEeCC-C-------eEEEEECCCCcceeeEE
Confidence            1        235899999999875  66666554  689999999998776654 3       8999999998  54443


Q ss_pred             eecCCCCCcCCeEECCCCC
Q 004971          602 IQSGSAGRANHPYFSPDGK  620 (721)
Q Consensus       602 ~~~~~~~~~~~~~~SpDG~  620 (721)
                      .. ........++++|||+
T Consensus       343 i~-~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          343 IE-GAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ET-TSCSSEEEEEECCCSC
T ss_pred             ec-cCCCCcEEEEecCCCC
Confidence            21 2445667899999997

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.58  E-value=1.1e-13  Score=139.80  Aligned_cols=230  Identities=10%  Similarity=0.124  Sum_probs=171.1

Q ss_pred             cEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEe---------------C
Q 004971          375 PFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVE---------------F  438 (721)
Q Consensus       375 ~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~---------------~  438 (721)
                      -.++.+|++|+|....+.       ..|+..+..+... .+..    ...--++++|.+|+|+.               .
T Consensus        19 g~~~~~g~~iy~~n~~d~-------~~ly~~~~dg~~~~~l~~----~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~   87 (302)
T 3s25_A           19 GLFCESDGEVFFSNTNDN-------GRLYAMNIDGSNIHKLSN----DTAMYINADKNYVYYVRNNNQKITSQTFFSYDR   87 (302)
T ss_dssp             TCEEEETTEEEEEEGGGT-------TEEEEEETTSCSCEEEEE----EEEEEEEECSSEEEEEEECC------CCSSCCS
T ss_pred             eEEEEeCCEEEEEeCCCC-------ceEEEEcCCCCCCEEccC----CceeeEEEcCCEEEEEECCCCcccccceeccCC
Confidence            346778999999765444       5788888766532 2221    11235689999999993               2


Q ss_pred             CcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEE
Q 004971          439 PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV  518 (721)
Q Consensus       439 ~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  518 (721)
                      ..|+.+++++++.+.|....  ...|+++|++|+|+..     ...+...||.++.++.    ..++|+.+..    +++
T Consensus        88 ~~Iy~i~~dg~~~~~l~~~~--~~~~s~~g~~Iy~~~~-----~~~~~~~Iy~~~~dGs----~~~~lt~~~~----~~~  152 (302)
T 3s25_A           88 NSLCRIKRNGHGSTVLDPDP--CIYASLIGNYIYYLHY-----DTQTATSLYRIRIDGE----EKKKIKNHYL----FTC  152 (302)
T ss_dssp             EEEEEEETTSCCCEEEECSC--EEEEEEETTEEEEEEE-----SSSSCEEEEEEETTSC----CCEEEESSCC----CCS
T ss_pred             CeEEEEeCCCCcceEeecCC--ccEEEEeCCEEEEEee-----cCCCCceEEEEECCCC----CeEEEeCCCc----eEe
Confidence            46999999999888887432  2378999999999851     1246788999999886    6777877643    567


Q ss_pred             ccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971          519 SPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL  598 (721)
Q Consensus       519 SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~  598 (721)
                      +|+|++|+|.+.  +..+||+++++++.   .+.+..+..  ..+ ++|+|++|+++....    + ..|++.+++++..
T Consensus       153 ~~~g~~iy~t~~--g~~~Iy~~~l~g~~---~~~l~~~~~--~~~-~~P~g~~iy~t~~~~----~-~~I~~~~ldG~~~  219 (302)
T 3s25_A          153 NTSDRYFYYNNP--KNGQLYRYDTASQS---EALFYDCNC--YKP-VVLDDTNVYYMDVNR----D-NAIVHVNINNPNP  219 (302)
T ss_dssp             EEETTEEEEECT--TTCCEEEEETTTTE---EEEEECSCE--EEE-EEEETTEEEEEEGGG----T-TEEEEECSSSCCC
T ss_pred             eEECCEEEEEeC--CCceEEEEECCCCC---EEEEeCCCc--cce-eeecCCEEEEEEcCC----C-cEEEEEECCCCCe
Confidence            999999999976  57799999999877   445544332  233 569999999998753    2 5899999999988


Q ss_pred             EEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccC
Q 004971          599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQN  664 (721)
Q Consensus       599 ~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~  664 (721)
                      +.|+..    .  .+.|+|+|++|+|.+....               ..|+.++++|...++|+..
T Consensus       220 ~~Lt~~----~--~~~~~~~g~~Iy~~~~~~~---------------~~i~~~~~DG~~r~~l~~~  264 (302)
T 3s25_A          220 VVLTEA----N--IEHYNVYGSLIFYQRGGDN---------------PALCVVKNDGTGFKELAKG  264 (302)
T ss_dssp             EECSCS----C--EEEEEEETTEEEEEECSSS---------------CEEEEEETTSCCCEEEEES
T ss_pred             EEEeCC----C--cceEEECCCEEEEEECCCC---------------cEEEEEECCCCccEEeeCC
Confidence            877632    1  2679999999998765443               2599999999988888863

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.57  E-value=4.3e-13  Score=144.44  Aligned_cols=244  Identities=10%  Similarity=0.095  Sum_probs=159.0

Q ss_pred             CCCCcccCcEEcCCCC-EEEEEEeeCCCCCCCCcceeEEEeccCC---------CCc---ceecccCCCCceeCcCCC-E
Q 004971          367 SPKTHHLNPFISPDSS-RVGYHKCRGGSTREDGNNQLLLENIKSP---------LPD---ISLFRFDGSFPSFSPKGD-R  432 (721)
Q Consensus       367 ~~~~~~~~~~~Spdg~-~l~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~---~~~~~~~~~~~~~SpDG~-~  432 (721)
                      .+...+..++|+|++. .|+....++         .+.++++...         ...   +......+..++|+|+++ .
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~dg---------~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  196 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPSS---------DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGY  196 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSSS---------CEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTE
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCCC---------cEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCe
Confidence            3466788899999854 444433333         3566665431         111   122233456789999998 7


Q ss_pred             EEEEe-CCcEEEEECCCCce--------EEEe--ecCceeeEEcCC-CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc
Q 004971          433 IAFVE-FPGVYVVNSDGSNR--------RQVY--FKNAFSTVWDPV-REAVVYTSGGPEFASESSEVDIISINVDDVDGV  500 (721)
Q Consensus       433 la~~~-~~~l~v~d~~~g~~--------~~l~--~~~~~~~~~spd-g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~  500 (721)
                      |+... ++.|.+|++..+..        ..+.  ...+..+.|+|+ +..++..+       .++.+.+|++.....  .
T Consensus       197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~-------~dg~i~i~d~~~~~~--~  267 (430)
T 2xyi_A          197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA-------DDQKLMIWDTRNNNT--S  267 (430)
T ss_dssp             EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE-------TTSEEEEEETTCSCS--S
T ss_pred             EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe-------CCCeEEEEECCCCCC--C
Confidence            77764 78999999987321        1222  456788999995 44555554       578899998875421  0


Q ss_pred             cceEEcccCCCCCcceEEccCCCEE-EEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCE-EEEEEcc
Q 004971          501 SAVRRLTTNGKNNAFPSVSPDGKWI-VFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW-IAFASDR  578 (721)
Q Consensus       501 ~~~~~l~~~~~~~~~~~~SpDg~~l-~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~-l~~~~~~  578 (721)
                      .....+..+...+..++|+|+++++ +..+.   +..|.+||+.+... .+..+..+...+..+.|+|+++. |+.++.+
T Consensus       268 ~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~---dg~v~vwd~~~~~~-~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d  343 (430)
T 2xyi_A          268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSA---DKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTD  343 (430)
T ss_dssp             SCSEEEECCSSCEEEEEECSSCTTEEEEEET---TSEEEEEETTCTTS-CSEEEECCSSCEEEEEECSSCTTEEEEEETT
T ss_pred             cceeEeecCCCCeEEEEeCCCCCCEEEEEeC---CCeEEEEeCCCCCC-CeEEeecCCCCEEEEEECCCCCCEEEEEeCC
Confidence            1344555666678889999999864 44554   67899999987331 25556566677889999999975 5555555


Q ss_pred             CCCCCCceeEEEEecCCC--------------ceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCC
Q 004971          579 DNPGSGSFEMYLIHPNGT--------------GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP  644 (721)
Q Consensus       579 ~~~~~~~~~i~~~d~~~~--------------~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~  644 (721)
                      +       .|.+||+...              +..... .++...+..++|+|++++++++...++              
T Consensus       344 ~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~s~dg--------------  401 (430)
T 2xyi_A          344 R-------RLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKISDFSWNPNEPWIICSVSEDN--------------  401 (430)
T ss_dssp             S-------CCEEEEGGGTTCCCCHHHHHHCCTTEEEEC-CCCSSCEEEEEECSSSTTEEEEEETTS--------------
T ss_pred             C-------cEEEEeCCCCccccCccccccCCcceEEEc-CCCCCCceEEEECCCCCCEEEEEECCC--------------
Confidence            3       7999998762              222222 235667889999999995444444443              


Q ss_pred             CccEEEEEcCCC
Q 004971          645 YGEIFKIKLDGS  656 (721)
Q Consensus       645 ~~~l~~~d~~~~  656 (721)
                        .|.+|++..+
T Consensus       402 --~i~iw~~~~~  411 (430)
T 2xyi_A          402 --IMQVWQMAEN  411 (430)
T ss_dssp             --EEEEEEECHH
T ss_pred             --CEEEeEcccc
Confidence              3888887654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.56  E-value=1.1e-11  Score=129.99  Aligned_cols=294  Identities=11%  Similarity=0.043  Sum_probs=171.5

Q ss_pred             eecCCCCEEEEEEecCCCCee-eEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC--CCCCcceeE
Q 004971          327 TSPGNNKFIAVATRRPTSSYR-HIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST--REDGNNQLL  403 (721)
Q Consensus       327 ~sp~dG~~la~~~~~~g~~~~-~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~--~~~~~~~l~  403 (721)
                      .+| |+++++.. +..+.... .|.++|.++++....  ... +... .+++||||++|+++.......  +.. ...+.
T Consensus        28 ~~~-~~~~~yv~-~~~~~~~~~~v~v~D~~t~~~~~~--i~~-g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~-~~~v~  100 (373)
T 2mad_H           28 PGA-DGRRSYIN-LPAHHSAIIQQWVLDAGSGSILGH--VNG-GFLP-NPVAAHSGSEFALASTSFSRIAKGKR-TDYVE  100 (373)
T ss_pred             CCC-CCCEEEEe-CCcccCCccEEEEEECCCCeEEEE--ecC-CCCC-CeEECCCCCEEEEEeccccccccCCC-CCeEE
Confidence            457 88765553 32111111 689999999874322  211 2233 899999999999876421100  000 03355


Q ss_pred             EEeccCCCC--cceec-------ccCCCCceeCcCCCEEEEEe---CCcEEEEECCCCceEEE-eecCceeeEEcCCCCe
Q 004971          404 LENIKSPLP--DISLF-------RFDGSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNRRQV-YFKNAFSTVWDPVREA  470 (721)
Q Consensus       404 ~~~~~~~~~--~~~~~-------~~~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~~~l-~~~~~~~~~~spdg~~  470 (721)
                      +.+..+...  .+...       ......++|||||++|++.+   ...|.++| ++++.... .. ....+.+.|+++.
T Consensus       101 viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-~~~~~~~~~~~~~  178 (373)
T 2mad_H          101 VFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-SPTCYHIHPGAPS  178 (373)
T ss_pred             EEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC-CCceEEEEeCCCc
Confidence            666543211  11111       11244679999999999884   36799999 98876433 31 1122556677766


Q ss_pred             EEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc-----cCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCC
Q 004971          471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT-----TNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG  544 (721)
Q Consensus       471 la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~-----~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~  544 (721)
                      .++...      .++++.++..  .+.    ......     ... .....+.+++++..+++.+.   ...++++|..+
T Consensus       179 ~~~~~~------~dg~~~~vd~--~g~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~v~vid~~~  243 (373)
T 2mad_H          179 TFYLLC------AQGGLAKTDH--AGG----AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---SGKILQADISA  243 (373)
T ss_pred             eEEEEc------CCCCEEEEEC--CCc----EEEEEeccccccCCcceeecceeEecCCEEEEEcC---CceEEEEeccC
Confidence            655442      3455444444  221    111111     111 11234678899888888875   56899999986


Q ss_pred             CcccceEECcC----------CCcCceeeEEccCCCEEEEEEccCCC---CCCceeEEEEecCCCceEEeeecCCCCCcC
Q 004971          545 GEGYGLHRLTE----------GPWSDTMCNWSPDGEWIAFASDRDNP---GSGSFEMYLIHPNGTGLRKLIQSGSAGRAN  611 (721)
Q Consensus       545 g~~~~~~~l~~----------~~~~~~~~~~SpDG~~l~~~~~~~~~---~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~  611 (721)
                      +....+..+..          .+.....+.++|||++|++.......   ......|+++|+++++...-..  ......
T Consensus       244 ~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~--~g~~p~  321 (373)
T 2mad_H          244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--LGHDVD  321 (373)
T ss_pred             CcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE--CCCCcC
Confidence            64322222210          01112337889999999887653110   0123479999999988754443  344688


Q ss_pred             CeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEe
Q 004971          612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL  661 (721)
Q Consensus       612 ~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l  661 (721)
                      .++|||||++++|..+...               ..|+++|++++++...
T Consensus       322 ~i~~s~Dg~~~l~v~~~~~---------------~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          322 AISVAQDGGPDLYALSAGT---------------EVLHIYDAGAGDQDQS  356 (373)
T ss_pred             eEEECCCCCeEEEEEcCCC---------------CeEEEEECCCCCEEee
Confidence            9999999996556655322               1599999999887644

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.55  E-value=4.8e-13  Score=144.28  Aligned_cols=262  Identities=12%  Similarity=0.042  Sum_probs=174.6

Q ss_pred             eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEE
Q 004971          326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLE  405 (721)
Q Consensus       326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~  405 (721)
                      ++++ ||++|+...     .++.|.+||+.+++....  ...+...+..+.|  +++.|+....++.         +.++
T Consensus       138 ~~~~-d~~~l~~g~-----~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~--~~~~l~sg~~dg~---------i~vw  198 (435)
T 1p22_A          138 CLQY-DDQKIVSGL-----RDNTIKIWDKNTLECKRI--LTGHTGSVLCLQY--DERVIITGSSDST---------VRVW  198 (435)
T ss_dssp             EEEC-CSSEEEEEE-----SSSCEEEEESSSCCEEEE--ECCCSSCEEEEEC--CSSEEEEEETTSC---------EEEE
T ss_pred             EEEE-CCCEEEEEe-----CCCeEEEEeCCCCeEEEE--EcCCCCcEEEEEE--CCCEEEEEcCCCe---------EEEE
Confidence            5667 999988854     345599999998874433  3455666666666  7888888765554         5666


Q ss_pred             eccCCCCccee--cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceE---EEe---ecCceeeEEcCCCCeEEEEec
Q 004971          406 NIKSPLPDISL--FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRR---QVY---FKNAFSTVWDPVREAVVYTSG  476 (721)
Q Consensus       406 ~~~~~~~~~~~--~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~---~l~---~~~~~~~~~spdg~~la~~~~  476 (721)
                      ++..+......  .......+.|+  +..++..+ ++.|.+||+.++...   ...   ...+..+.|  +++.|+.++ 
T Consensus       199 d~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~-  273 (435)
T 1p22_A          199 DVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS-  273 (435)
T ss_dssp             ESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE-
T ss_pred             ECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEe-
Confidence            66554221111  11122234555  45677664 789999999877643   222   345566666  888998886 


Q ss_pred             CCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC
Q 004971          477 GPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG  556 (721)
Q Consensus       477 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~  556 (721)
                            .++.+.+|++....     ....+..+...+..+.|  +++.|+..+.   +..|++||+.+++.  +..+..+
T Consensus       274 ------~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~--~~~~l~~g~~---dg~i~iwd~~~~~~--~~~~~~h  335 (435)
T 1p22_A          274 ------GDRTIKVWNTSTCE-----FVRTLNGHKRGIACLQY--RDRLVVSGSS---DNTIRLWDIECGAC--LRVLEGH  335 (435)
T ss_dssp             ------TTSEEEEEETTTCC-----EEEEEECCSSCEEEEEE--ETTEEEEEET---TSCEEEEETTTCCE--EEEECCC
T ss_pred             ------CCCeEEEEECCcCc-----EEEEEcCCCCcEEEEEe--CCCEEEEEeC---CCeEEEEECCCCCE--EEEEeCC
Confidence                  57889998875532     55566666555555566  6788888886   78899999998875  5666666


Q ss_pred             CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc---------eEEeeecCCCCCcCCeEECCCCCEEEEEEe
Q 004971          557 PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG---------LRKLIQSGSAGRANHPYFSPDGKSIVFTSD  627 (721)
Q Consensus       557 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~---------~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~  627 (721)
                      ...+..++|  |++.|+.++.++       .|.+||+.+++         ...... .+...+..++|  ||++|+..+.
T Consensus       336 ~~~v~~~~~--~~~~l~sg~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~  403 (435)
T 1p22_A          336 EELVRCIRF--DNKRIVSGAYDG-------KIKVWDLVAALDPRAPAGTLCLRTLV-EHSGRVFRLQF--DEFQIVSSSH  403 (435)
T ss_dssp             SSCEEEEEC--CSSEEEEEETTS-------CEEEEEHHHHTSTTSCTTTTEEEEEC-CCSSCCCCEEE--CSSCEEECCS
T ss_pred             cCcEEEEEe--cCCEEEEEeCCC-------cEEEEECCCCCCccccccchheeecc-CCCCCeEEEEe--CCCEEEEEeC
Confidence            666677777  889999988875       89999986654         333332 36778888888  7888877665


Q ss_pred             cCCCcCCCCCCCCCCCCCccEEEEEcCCCCe
Q 004971          628 YGGISAEPISTPHQYQPYGEIFKIKLDGSDL  658 (721)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  658 (721)
                      ++                 .|.+||+.+...
T Consensus       404 Dg-----------------~i~iwd~~~~~~  417 (435)
T 1p22_A          404 DD-----------------TILIWDFLNDPA  417 (435)
T ss_dssp             SS-----------------EEEEEC------
T ss_pred             CC-----------------EEEEEECCCCCC
Confidence            54                 499999877644

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.55  E-value=1.4e-11  Score=127.49  Aligned_cols=309  Identities=14%  Similarity=0.121  Sum_probs=179.1

Q ss_pred             eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCC-CCCCCcceeEE
Q 004971          326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS-TREDGNNQLLL  404 (721)
Q Consensus       326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~-~~~~~~~~l~~  404 (721)
                      ...| |+++++............|.++|.++++.......   +... .+++||||++++.+...... ..-.....+.+
T Consensus        39 ~~~p-d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v---G~~P-~va~spDG~~lyVan~~~~r~~~G~~~~~Vsv  113 (386)
T 3sjl_D           39 APAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG---GFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEV  113 (386)
T ss_dssp             CCCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE---CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             ccCC-CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC---CCCC-cEEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence            4468 99988776543111235799999999874332221   2223 39999999999887631000 00000023666


Q ss_pred             EeccCCCC--cceec-------ccCCCCceeCcCCCEEEEEe---CCcEEEEECCCCceE-EEe-e--------cCceee
Q 004971          405 ENIKSPLP--DISLF-------RFDGSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNRR-QVY-F--------KNAFST  462 (721)
Q Consensus       405 ~~~~~~~~--~~~~~-------~~~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~~-~l~-~--------~~~~~~  462 (721)
                      +|..+...  .+...       ......+++||||+++++.+   .+.|.++|+.+++.. .|. .        +....+
T Consensus       114 iD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~  193 (386)
T 3sjl_D          114 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF  193 (386)
T ss_dssp             ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEE
T ss_pred             EECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeE
Confidence            66655421  11111       11344579999999988874   467999999998743 343 1        112234


Q ss_pred             EEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEc-cCCCEEEEEEeeCCceeEEEE
Q 004971          463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVS-PDGKWIVFRSTRTGYKNLYIM  540 (721)
Q Consensus       463 ~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~S-pDg~~l~~~s~~~g~~~l~~~  540 (721)
                      ..++||+.+++...      ..+++.  ....         ..+.... .....+.|. +||+ ++|.+.   ..++|++
T Consensus       194 ~~~~DG~~~~v~~~------~~g~v~--~~~~---------~~~~~~~~~~~~~~~~~~~dG~-~~~vs~---~g~V~v~  252 (386)
T 3sjl_D          194 MHCRDGSLAKVAFG------TEGTPE--ITHT---------EVFHPEDEFLINHPAYSQKAGR-LVWPTY---TGKIHQI  252 (386)
T ss_dssp             EEETTSCEEEEECC------SSSCCE--EEEC---------CCCSCTTSCBCSCCEEETTTTE-EEEEBT---TSEEEEE
T ss_pred             EECCCCCEEEEECC------CCCeEE--Eeec---------ceeccccccccccceeEcCCCc-EEEEeC---CCEEEEE
Confidence            67788877766642      112221  1000         0011111 112235775 7875 555665   5689999


Q ss_pred             ECCCCcccceEECc--------CC--CcCceeeEEccCCCEEEEEEccCCC---CCCceeEEEEecCCCceEEeeecCCC
Q 004971          541 DAEGGEGYGLHRLT--------EG--PWSDTMCNWSPDGEWIAFASDRDNP---GSGSFEMYLIHPNGTGLRKLIQSGSA  607 (721)
Q Consensus       541 d~~~g~~~~~~~l~--------~~--~~~~~~~~~SpDG~~l~~~~~~~~~---~~~~~~i~~~d~~~~~~~~l~~~~~~  607 (721)
                      |..++..+....+.        .+  ......++++||+++|++...+...   ......|+++|+.+++..+-...  .
T Consensus       253 d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v--g  330 (386)
T 3sjl_D          253 DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM--G  330 (386)
T ss_dssp             ECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--E
T ss_pred             ECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC--C
Confidence            99876532222221        00  1122457889999999997653110   01246899999999987665542  3


Q ss_pred             CCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCCc
Q 004971          608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF  677 (721)
Q Consensus       608 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~~  677 (721)
                      .....+++||||+.++|..+...               +.|.++|..++++..-....+......++++|
T Consensus       331 ~~~~~lavs~D~~~~ly~tn~~~---------------~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d~  385 (386)
T 3sjl_D          331 HEIDSINVSQDEKPLLYALSTGD---------------KTLYIHDAESGEELRSVNQLGHGPQVITTADM  385 (386)
T ss_dssp             EEECEEEECSSSSCEEEEEETTT---------------TEEEEEETTTCCEEEEECCCCSSCCEEEECCC
T ss_pred             CCcceEEECCCCCeEEEEEcCCC---------------CeEEEEECCCCcEEEEecCCCCCceeEECCcC
Confidence            45778999999985555555432               25999999888765433334445667777763

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.55  E-value=9.9e-14  Score=142.74  Aligned_cols=238  Identities=9%  Similarity=-0.005  Sum_probs=157.2

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCC--CCEEEEEEecCCCCeee
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGN--NKFIAVATRRPTSSYRH  348 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~d--G~~la~~~~~~g~~~~~  348 (721)
                      ..+|++||+++++.  ..++.+.||.+......       ....+..+...+..++|+| +  |+.|+..+     .+..
T Consensus        18 ~v~~s~~g~~lasg--s~D~~v~lwd~~~~~~~-------~~~~l~gH~~~V~~v~~~~-~~~~~~l~s~s-----~D~~   82 (316)
T 3bg1_A           18 DAQMDYYGTRLATC--SSDRSVKIFDVRNGGQI-------LIADLRGHEGPVWQVAWAH-PMYGNILASCS-----YDRK   82 (316)
T ss_dssp             EEEECGGGCEEEEE--ETTTEEEEEEEETTEEE-------EEEEEECCSSCEEEEEECC-GGGSSCEEEEE-----TTSC
T ss_pred             EeeEcCCCCEEEEE--eCCCeEEEEEecCCCcE-------EEEEEcCCCccEEEEEeCC-CCCCCEEEEEE-----CCCE
Confidence            34799999877743  34789999976533211       2344556766788899986 4  78777754     3456


Q ss_pred             EEEEECCCCceEEeecccCCCCcccCcEEcCC--CCEEEEEEeeCCCCCCCCcceeEEEeccCCC-----CcceecccCC
Q 004971          349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPD--SSRVGYHKCRGGSTREDGNNQLLLENIKSPL-----PDISLFRFDG  421 (721)
Q Consensus       349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~  421 (721)
                      |++||+.+++...+.....+...+..++|+|+  |..|+..+.++.         +.++++....     ..........
T Consensus        83 v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~---------i~lwd~~~~~~~~~~~~~~~h~~~v  153 (316)
T 3bg1_A           83 VIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA---------ISLLTYTGEGQWEVKKINNAHTIGC  153 (316)
T ss_dssp             EEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC---------EEEEEECSSSCEEECCBTTSSSSCB
T ss_pred             EEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC---------EEEEecCCCCCcceeeeeccccCCc
Confidence            99999998754344444556777888999998  777777655554         4444444321     1111112234


Q ss_pred             CCceeCcC-----------------CCEEEEEe-CCcEEEEECCCCc-eEEE---e--ecCceeeEEcCCC----CeEEE
Q 004971          422 SFPSFSPK-----------------GDRIAFVE-FPGVYVVNSDGSN-RRQV---Y--FKNAFSTVWDPVR----EAVVY  473 (721)
Q Consensus       422 ~~~~~SpD-----------------G~~la~~~-~~~l~v~d~~~g~-~~~l---~--~~~~~~~~~spdg----~~la~  473 (721)
                      ..+.|+|+                 +++|+..+ ++.|.+||+..+. ...+   .  ...+..++|+|++    +.|+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las  233 (316)
T 3bg1_A          154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS  233 (316)
T ss_dssp             CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEE
T ss_pred             ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEE
Confidence            45788887                 35666654 7789999997543 2222   2  3567899999997    77877


Q ss_pred             EecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC
Q 004971          474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE  543 (721)
Q Consensus       474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~  543 (721)
                      .+       .++.++||++...... ......+..+...+..++|+|||++|+..+.   +..|++|+..
T Consensus       234 ~s-------~D~~v~iw~~~~~~~~-~~~~~~~~~~~~~v~~v~~sp~g~~las~~~---D~~v~lw~~~  292 (316)
T 3bg1_A          234 CS-------QDGRVFIWTCDDASSN-TWSPKLLHKFNDVVWHVSWSITANILAVSGG---DNKVTLWKES  292 (316)
T ss_dssp             EE-------TTCEEEEEECSSTTCC-CCBCCEEEECSSCEEEEEECTTTCCEEEEES---SSCEEEEEEC
T ss_pred             Ec-------CCCeEEEEEccCcccc-chhhhhhhcCCCcEEEEEEcCCCCEEEEEcC---CCeEEEEEEC
Confidence            76       5789999988652110 0012234445567788999999999998887   7789999865

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.54  E-value=3.3e-13  Score=141.24  Aligned_cols=237  Identities=10%  Similarity=0.015  Sum_probs=156.4

Q ss_pred             cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe--CCcEEE
Q 004971          366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE--FPGVYV  443 (721)
Q Consensus       366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~--~~~l~v  443 (721)
                      ..+...+..++|||||+.|+.... .+       .  .+++...................++++++.+++++  +..|.+
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~-~~-------~--~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i   85 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTL-KS-------F--EIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHI   85 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECS-SE-------E--EEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcC-CE-------E--EEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEE
Confidence            445667888999999998887532 22       2  33443332111111111234467888898887773  568999


Q ss_pred             EECCCCceEE-Ee-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC
Q 004971          444 VNSDGSNRRQ-VY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD  521 (721)
Q Consensus       444 ~d~~~g~~~~-l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD  521 (721)
                      ||+.+++... +. ...+..+.++++.  ++++.        ++.+.||++.....    ....+..   .....++++ 
T Consensus        86 Wd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~--------~~~i~i~d~~~~~~----~~~~~~~---~~~~~~~s~-  147 (355)
T 3vu4_A           86 WDDVKKQDVSRIKVDAPVKDLFLSREF--IVVSY--------GDVISVFKFGNPWK----RITDDIR---FGGVCEFSN-  147 (355)
T ss_dssp             EETTTTEEEEEEECSSCEEEEEECSSE--EEEEE--------TTEEEEEESSTTCC----BSSCCEE---EEEEEEEET-
T ss_pred             EECCCCcEEEEEECCCceEEEEEcCCE--EEEEE--------cCEEEEEECCCCce----eeEEecc---CCceEEEEc-
Confidence            9998887543 33 5567788888774  44443        46788888765411    2222222   223456777 


Q ss_pred             CCEEEEEEeeCCceeEEEEECCCCcc-------------cc-eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCcee
Q 004971          522 GKWIVFRSTRTGYKNLYIMDAEGGEG-------------YG-LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFE  587 (721)
Q Consensus       522 g~~l~~~s~~~g~~~l~~~d~~~g~~-------------~~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~  587 (721)
                       +.+++.+. ..+..|++||+.+++.             .. +..+..+...+..++|+|||++|+.++.++       .
T Consensus       148 -~~la~~sg-~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~-------~  218 (355)
T 3vu4_A          148 -GLLVYSNE-FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG-------T  218 (355)
T ss_dssp             -TEEEEEES-SCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC-------S
T ss_pred             -cEEEEeCC-CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC-------C
Confidence             77887632 1156799999987641             00 345566777789999999999999999875       7


Q ss_pred             -EEEEecCCCceEEeeecC-CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971          588 -MYLIHPNGTGLRKLIQSG-SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       588 -i~~~d~~~~~~~~l~~~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~  656 (721)
                       |.+||+.+++.......+ +...+..++|+|||++|+..+.+.                 .|.+||+..+
T Consensus       219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~-----------------~v~iw~~~~~  272 (355)
T 3vu4_A          219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKW-----------------TLHVFEIFND  272 (355)
T ss_dssp             EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTC-----------------EEEEEESSCC
T ss_pred             EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCC-----------------EEEEEEccCC
Confidence             999999988766555423 667889999999999999887765                 3889998665

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.54  E-value=8.2e-12  Score=137.71  Aligned_cols=357  Identities=11%  Similarity=0.080  Sum_probs=208.7

Q ss_pred             cccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccC--CcceeccCCeEEEEeccCCCCcEEEEEEe
Q 004971          221 PAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENG--GWPCWVDESTLFFHRKSEEDDWISVYKVI  298 (721)
Q Consensus       221 p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~--~~~~ws~dg~l~~~~~~~~~g~~~l~~~~  298 (721)
                      +.++.|...++++...+.          ..|+++|.++++.........  ....++|||+.+|..  ..++.+.+|+..
T Consensus       159 ~~~~~d~~~~~~V~~~~~----------~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~--~~dg~V~viD~~  226 (567)
T 1qks_A          159 QMNDWDLENLFSVTLRDA----------GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVI--GRDGKVNMIDLW  226 (567)
T ss_dssp             CCSCCCGGGEEEEEETTT----------TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEE--ETTSEEEEEETT
T ss_pred             cccccCCCceEEEEeCCC----------CeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEE--cCCCeEEEEECC
Confidence            345666443444444443          689999999988664432221  256899999866632  235666666432


Q ss_pred             cCCCcceeccccceEEeCCCCCcccCceee----cCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC-------
Q 004971          299 LPQTGLVSTESVSIQRVTPPGLHAFTPATS----PGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS-------  367 (721)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----p~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~-------  367 (721)
                      .....       ....+. .+.....++||    | ||++++......    ..+.++|..+.+.........       
T Consensus       227 ~~t~~-------~v~~i~-~G~~P~~ia~s~~~~p-DGk~l~v~n~~~----~~v~ViD~~t~~~~~~i~~~~~~~~~~~  293 (567)
T 1qks_A          227 MKEPT-------TVAEIK-IGSEARSIETSKMEGW-EDKYAIAGAYWP----PQYVIMDGETLEPKKIQSTRGMTYDEQE  293 (567)
T ss_dssp             SSSCC-------EEEEEE-CCSEEEEEEECCSTTC-TTTEEEEEEEET----TEEEEEETTTCCEEEEEECCEECTTTCC
T ss_pred             CCCCc-------EeEEEe-cCCCCceeEEccccCC-CCCEEEEEEccC----CeEEEEECCCCcEEEEEecccccccccc
Confidence            01211       222332 23355788999    9 999988765443    348899998887544322111       


Q ss_pred             --CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceeccc--CCCCceeCcCCCEEEEEe--CCc
Q 004971          368 --PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRF--DGSFPSFSPKGDRIAFVE--FPG  440 (721)
Q Consensus       368 --~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~--~~~~~~~SpDG~~la~~~--~~~  440 (721)
                        +...+..+..|+++..+++.. ...       ..+++.+...... .++....  ......|+|||++++...  .+.
T Consensus       294 ~~p~~rva~i~~s~~~~~~vv~~-~~~-------g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~  365 (567)
T 1qks_A          294 YHPEPRVAAILASHYRPEFIVNV-KET-------GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK  365 (567)
T ss_dssp             EESCCCEEEEEECSSSSEEEEEE-TTT-------TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred             ccCCCceEEEEEcCCCCEEEEEe-cCC-------CeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCe
Confidence              011334567788887766644 332       4577777543311 1111111  112357999999988773  678


Q ss_pred             EEEEECCCCceEEEe-e-cCc----eeeE-EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC--CCccceEEcccCCC
Q 004971          441 VYVVNSDGSNRRQVY-F-KNA----FSTV-WDPVREAVVYTSGGPEFASESSEVDIISINVDDV--DGVSAVRRLTTNGK  511 (721)
Q Consensus       441 l~v~d~~~g~~~~l~-~-~~~----~~~~-~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~l~~~~~  511 (721)
                      |.++|+++++..... . +..    ..+. ++|++..+++++.     ..++.+.++..+..+.  .....++.+.....
T Consensus       366 V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~-----~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~  440 (567)
T 1qks_A          366 LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSH-----MGDDSVALIGTDPEGHPDNAWKILDSFPALGG  440 (567)
T ss_dssp             EEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEB-----SSSSEEEEEECCTTTCTTTBTSEEEEEECSCS
T ss_pred             EEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCC-----CCCCeEEEecCCCCCCccccCEEEEEEecCCC
Confidence            999999998754333 2 221    1233 5888888877653     1345666666654221  01123455554433


Q ss_pred             CCcceEEccCCCEEEEEEeeCC----ceeEEEEECCCCc----ccceEECc--------CCCcCceeeEEccCCCEEEEE
Q 004971          512 NNAFPSVSPDGKWIVFRSTRTG----YKNLYIMDAEGGE----GYGLHRLT--------EGPWSDTMCNWSPDGEWIAFA  575 (721)
Q Consensus       512 ~~~~~~~SpDg~~l~~~s~~~g----~~~l~~~d~~~g~----~~~~~~l~--------~~~~~~~~~~~SpDG~~l~~~  575 (721)
                      ....+..+||+++|++......    ...|.++|+++.+    .+....+.        .+...+.++.|+|||++|+++
T Consensus       441 g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s  520 (567)
T 1qks_A          441 GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFS  520 (567)
T ss_dssp             CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEE
T ss_pred             CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEE
Confidence            4456788999999887652221    3489999988661    11112232        223456789999999999998


Q ss_pred             EccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEE
Q 004971          576 SDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF  624 (721)
Q Consensus       576 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~  624 (721)
                      .....  .....|.++|..++++......   ..    ..+|.|++-++
T Consensus       521 ~~~~~--~~~~~i~v~D~~t~~~~~~i~~---~~----~~~P~g~f~~~  560 (567)
T 1qks_A          521 VWNGK--DQESALVVVDDKTLELKHVIKD---ER----LVTPTGKFNVY  560 (567)
T ss_dssp             EECCT--TSCCEEEEEETTTTEEEEEECC---TT----CCSEEEEEEHH
T ss_pred             eecCC--CCCCcEEEEECCCceEEEEeCC---Cc----ccCCCeeeeee
Confidence            64210  0234899999999887665532   11    24577776544

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.53  E-value=4.5e-13  Score=144.26  Aligned_cols=248  Identities=12%  Similarity=0.052  Sum_probs=164.0

Q ss_pred             CCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCC--------CceEEeecccCCCCcccCcEEcCCCC-EEEE
Q 004971          316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVK--------NKFIELTRFVSPKTHHLNPFISPDSS-RVGY  386 (721)
Q Consensus       316 ~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~t--------g~~~~l~~~~~~~~~~~~~~~Spdg~-~l~~  386 (721)
                      ..+...+..++|+| ++..+++...    .++.|.+||+.+        ++...+.....+...+..++|+|+++ .|+.
T Consensus       125 ~~h~~~v~~l~~~p-~~~~~lat~~----~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  199 (430)
T 2xyi_A          125 INHEGEVNRARYMP-QNACVIATKT----PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS  199 (430)
T ss_dssp             EEESSCCSEEEEET-TEEEEEEEEC----SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred             EcCCCcEEEEEECC-CCCcEEEEEC----CCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence            34445677899999 8544444322    345599999976        22223444455677788999999998 7766


Q ss_pred             EEeeCCCCCCCCcceeEEEeccCCCCc------ce---ecccCCCCceeCc-CCCEEEEE-eCCcEEEEECCCCc----e
Q 004971          387 HKCRGGSTREDGNNQLLLENIKSPLPD------IS---LFRFDGSFPSFSP-KGDRIAFV-EFPGVYVVNSDGSN----R  451 (721)
Q Consensus       387 ~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~---~~~~~~~~~~~Sp-DG~~la~~-~~~~l~v~d~~~g~----~  451 (721)
                      ...++.         +.++++......      ..   ........++|+| ++..++.. .++.|++||+..+.    .
T Consensus       200 ~~~dg~---------i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~  270 (430)
T 2xyi_A          200 ASDDHT---------ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPS  270 (430)
T ss_dssp             ECTTSC---------EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCS
T ss_pred             EeCCCe---------EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcce
Confidence            544443         666666542110      11   1122234579999 55666665 47899999998762    2


Q ss_pred             EEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEE
Q 004971          452 RQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS  529 (721)
Q Consensus       452 ~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s  529 (721)
                      ..+.  ...+..+.|+|+++.++++.      ..++.+.||++.....    ....+..+...+..++|+|+++.+++..
T Consensus       271 ~~~~~~~~~v~~i~~~p~~~~~l~tg------~~dg~v~vwd~~~~~~----~~~~~~~h~~~v~~i~~sp~~~~~l~s~  340 (430)
T 2xyi_A          271 HTVDAHTAEVNCLSFNPYSEFILATG------SADKTVALWDLRNLKL----KLHSFESHKDEIFQVQWSPHNETILASS  340 (430)
T ss_dssp             EEEECCSSCEEEEEECSSCTTEEEEE------ETTSEEEEEETTCTTS----CSEEEECCSSCEEEEEECSSCTTEEEEE
T ss_pred             eEeecCCCCeEEEEeCCCCCCEEEEE------eCCCeEEEEeCCCCCC----CeEEeecCCCCEEEEEECCCCCCEEEEE
Confidence            3333  46788999999999755544      2578899998875432    5666766777888999999997644444


Q ss_pred             eeCCceeEEEEECCCCc------------ccceEECcCCCcCceeeEEccCCC-EEEEEEccCCCCCCceeEEEEecCCC
Q 004971          530 TRTGYKNLYIMDAEGGE------------GYGLHRLTEGPWSDTMCNWSPDGE-WIAFASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       530 ~~~g~~~l~~~d~~~g~------------~~~~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                      ..  +..|.+||+....            ...+..+..+...+..++|+|+++ .|+.++.++       .|.+|++..+
T Consensus       341 ~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg-------~i~iw~~~~~  411 (430)
T 2xyi_A          341 GT--DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN-------IMQVWQMAEN  411 (430)
T ss_dssp             ET--TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS-------EEEEEEECHH
T ss_pred             eC--CCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC-------CEEEeEcccc
Confidence            32  6689999987621            112444445556688999999999 566666554       8999998654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=99.52  E-value=2.8e-12  Score=147.63  Aligned_cols=261  Identities=11%  Similarity=0.127  Sum_probs=170.1

Q ss_pred             cccCceee-cCCCCEEEEEEecCCCCeeeEEEEECCCC-ceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCC
Q 004971          321 HAFTPATS-PGNNKFIAVATRRPTSSYRHIELFDLVKN-KFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDG  398 (721)
Q Consensus       321 ~~~~~~~s-p~dG~~la~~~~~~g~~~~~l~l~dl~tg-~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~  398 (721)
                      ....+.|| | ||++|+|.....|.+...|+++|++++ +.  +....  ......+.|||||+.|+|...+....    
T Consensus       175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~~~--~~~~~~~~WspDg~~l~y~~~d~~~~----  245 (751)
T 2xe4_A          175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IADKV--SGTNGEIVWGPDHTSLFYVTKDETLR----  245 (751)
T ss_dssp             EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCCCE--EEECSCCEECSSTTEEEEEEECTTCC----
T ss_pred             EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCccc--cCceeeEEEecCCCEEEEEEECCCCC----
Confidence            45678999 9 999999998877777778999999998 62  21100  11245799999999999987654211    


Q ss_pred             cceeEEEeccCCCCc-ceec--ccC--CCCceeCcCCCEEEEEe----CCcEEEEECCCC--ce--EEEeecCceeeEEc
Q 004971          399 NNQLLLENIKSPLPD-ISLF--RFD--GSFPSFSPKGDRIAFVE----FPGVYVVNSDGS--NR--RQVYFKNAFSTVWD  465 (721)
Q Consensus       399 ~~~l~~~~~~~~~~~-~~~~--~~~--~~~~~~SpDG~~la~~~----~~~l~v~d~~~g--~~--~~l~~~~~~~~~~s  465 (721)
                      ..+++..++.++... ....  ...  ...+.|||||++|++..    ...|+++|++++  +.  +.+... ...+.|+
T Consensus       246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~~s  324 (751)
T 2xe4_A          246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR-EKGVRYD  324 (751)
T ss_dssp             EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC-CTTCCEE
T ss_pred             CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC-CCCceEE
Confidence            146888888765322 1111  111  12368999999999983    567999999876  34  555422 2234555


Q ss_pred             CC---CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE-cccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEE
Q 004971          466 PV---REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR-LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD  541 (721)
Q Consensus       466 pd---g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d  541 (721)
                      ++   |+.|++.++..    ..+..+||.++.++.   ...+. +..+........+++++++|++....++..+|++++
T Consensus       325 ~~~~~g~~l~~~t~~~----~a~~~~L~~~d~~~~---~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~d  397 (751)
T 2xe4_A          325 VQMHGTSHLVILTNEG----GAVNHKLLIAPRGQP---SDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMM  397 (751)
T ss_dssp             EEEETTTEEEEEECTT----TCTTCEEEEEETTST---TCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred             EeeeeCCEEEEEeCCC----CCCCcEEEEEcCCCc---ccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEe
Confidence            65   99999988521    135678999987641   12233 333332223345777889999999888888999999


Q ss_pred             C-------CCCcccceEECcCC-CcCceeeEE----ccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971          542 A-------EGGEGYGLHRLTEG-PWSDTMCNW----SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ  603 (721)
Q Consensus       542 ~-------~~g~~~~~~~l~~~-~~~~~~~~~----SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  603 (721)
                      +       ++++.  +..+... ......+.+    ++|++.|++.....   .....+|.+|+.+++.+.+..
T Consensus       398 l~~~~~~~~~g~~--~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~---~~P~~~~~~d~~~~~~~~l~~  466 (751)
T 2xe4_A          398 ADSQDGVFKAGTG--LREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSL---ATPNTWFDVSPQDHSRTAVKV  466 (751)
T ss_dssp             CCTTTSCCCTTTC--CEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEET---TEEEEEEEECTTTCCEEEEEE
T ss_pred             cccccccccCCcc--ceEECCCCceeEEEeccCcccCCCCCEEEEEEeCC---CCCCEEEEEECCCCcEEEEec
Confidence            7       45441  2344322 121223333    56888777776543   355689999999888777764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.50  E-value=2.5e-11  Score=127.92  Aligned_cols=287  Identities=11%  Similarity=0.050  Sum_probs=164.8

Q ss_pred             CCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCC--CCCCCcceeEEEecc
Q 004971          331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS--TREDGNNQLLLENIK  408 (721)
Q Consensus       331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~--~~~~~~~~l~~~~~~  408 (721)
                      ++++++............|.++|+++++...-...   +... ++++||||++|+........  .+.. ...+.+.|..
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v---G~~P-gia~SpDgk~lyVan~~~~~~~~G~~-~~~VsviD~~  157 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG---GFLP-HPVAAEDGSFFAQASTVFERIARGKR-TDYVEVFDPV  157 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE---CSSC-EEEECTTSSCEEEEEEEEEETTEEEE-EEEEEEECTT
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC---CCCC-ceEECCCCCEEEEEeccccccccCCC-CCEEEEEECC
Confidence            88877665432111116799999999875433221   2234 79999999999987642100  0000 0346666665


Q ss_pred             CCCC--cceec-------ccCCCCceeCcCCCEEEEEe---CCcEEEEECCCCceE-EEeecC---------ceeeEEcC
Q 004971          409 SPLP--DISLF-------RFDGSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNRR-QVYFKN---------AFSTVWDP  466 (721)
Q Consensus       409 ~~~~--~~~~~-------~~~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~~-~l~~~~---------~~~~~~sp  466 (721)
                      +...  .+...       ......+.+||||++|++..   .+.|.++|+.+++.. .+..+.         ...+.+++
T Consensus       158 t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~  237 (426)
T 3c75_H          158 TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCR  237 (426)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEET
T ss_pred             CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcC
Confidence            5421  11111       12245679999999998874   467999999988753 343211         11234444


Q ss_pred             CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCC
Q 004971          467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG  545 (721)
Q Consensus       467 dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g  545 (721)
                      ||+.+++...       .+++.. ..         . ..+.... .....+.+++|++.+++.+.   ...++++|..++
T Consensus       238 dG~~~~V~~~-------~~~v~~-~~---------~-~~~~v~~~p~~~~~~~~~dg~~~~~~s~---~g~V~ViD~~~~  296 (426)
T 3c75_H          238 DGSLARVDFA-------DGETKV-TN---------T-EVFHTEDELLINHPAFSLRSGRLVWPTY---TGKIFQADLTAE  296 (426)
T ss_dssp             TSSEEEEECC-------TTCCEE-EE---------C-CCCSCTTSCBCSCCEECTTTCEEEEEBT---TSEEEEEEECSS
T ss_pred             CCCEEEEECC-------CCcEEE-Ee---------e-eeeccCCCceeeEeeecCCCCEEEEEeC---CCcEEEEeccCC
Confidence            5544444320       011110 00         0 0011111 11234678999999999875   458999999766


Q ss_pred             cccceEE--Cc-CC-------CcCceeeEEccCCCEEEEEEccCCCC---CCceeEEEEecCCCceEEeeecCCCCCcCC
Q 004971          546 EGYGLHR--LT-EG-------PWSDTMCNWSPDGEWIAFASDRDNPG---SGSFEMYLIHPNGTGLRKLIQSGSAGRANH  612 (721)
Q Consensus       546 ~~~~~~~--l~-~~-------~~~~~~~~~SpDG~~l~~~~~~~~~~---~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~  612 (721)
                      ....+..  +. ..       ......++++|||++|++........   .....|.++|+.+.+...-...  ......
T Consensus       297 ~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v--g~~P~g  374 (426)
T 3c75_H          297 GATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL--GHEIDS  374 (426)
T ss_dssp             CEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--EEEECE
T ss_pred             ceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC--CCCcCe
Confidence            5211111  10 00       11122478999999998876431100   1245899999999886655442  235788


Q ss_pred             eEECCCCC-EEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-Ee
Q 004971          613 PYFSPDGK-SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RL  661 (721)
Q Consensus       613 ~~~SpDG~-~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l  661 (721)
                      +.|+|||+ ++|.....++                .|.++|+.+.++. +|
T Consensus       375 ia~spDg~~~lyv~n~~s~----------------~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          375 INVSQDAEPLLYALSAGTQ----------------TLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEECCSSSCEEEEEETTTT----------------EEEEEETTTCCEEEEE
T ss_pred             EEEccCCCEEEEEEcCCCC----------------eEEEEECCCCCEEEEe
Confidence            99999999 5554443333                5999999998765 55

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.49  E-value=6.4e-13  Score=153.57  Aligned_cols=225  Identities=10%  Similarity=0.072  Sum_probs=165.6

Q ss_pred             CCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe-----ecCceeeEEcCC--CCeEEEEecCCCCCCCCCcEEEEEE
Q 004971          421 GSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY-----FKNAFSTVWDPV--REAVVYTSGGPEFASESSEVDIISI  492 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~-----~~~~~~~~~spd--g~~la~~~~~~~~~~~~~~~~i~~~  492 (721)
                      ...++|+|||++|+..+ ++.|.+|++.++....+.     .+.+..+.|+|+  ++.|+.++       .++.+.+|++
T Consensus        12 V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s-------~Dg~I~vwd~   84 (753)
T 3jro_A           12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS-------YDGKVLIWKE   84 (753)
T ss_dssp             EEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEE-------TTSCEEEEEE
T ss_pred             eEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEe-------CCCeEEEEEC
Confidence            34578999999998885 788999999855433332     457889999998  99999887       5789999998


Q ss_pred             EccCCCCccceEEcccCCCCCcceEEccC--CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEcc---
Q 004971          493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPD--GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP---  567 (721)
Q Consensus       493 ~~~~~~~~~~~~~l~~~~~~~~~~~~SpD--g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~Sp---  567 (721)
                      .....   .....+..+...+..++|+|+  |+.|++.+.   +..|++||+.++.......+..+...+..+.|+|   
T Consensus        85 ~~~~~---~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~---dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~  158 (753)
T 3jro_A           85 ENGRW---SQIAVHAVHSASVNSVQWAPHEYGPLLLVASS---DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  158 (753)
T ss_dssp             ETTEE---EEEEEECCCSSCEEEEEECCGGGCSEEEEEET---TSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-
T ss_pred             CCCcc---cccccccCCCCCeEEEEECCCCCCCEEEEEeC---CCcEEEEEeecCCCcceeEeecCCCceEEEEecCccc
Confidence            86421   134455556677888999999  999998887   7899999998874333445556666788999999   


Q ss_pred             ----------CCCEEEEEEccCCCCCCceeEEEEecCCCceE-E--eeecCCCCCcCCeEECCC---CCEEEEEEecCCC
Q 004971          568 ----------DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR-K--LIQSGSAGRANHPYFSPD---GKSIVFTSDYGGI  631 (721)
Q Consensus       568 ----------DG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~-~--l~~~~~~~~~~~~~~SpD---G~~l~~~~~~~~~  631 (721)
                                |++.|+.++.++       .|++||+.++... .  .....+...+..++|+|+   |++|+..+.++  
T Consensus       159 ~~~~~~~~~~d~~~l~sgs~dg-------~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg--  229 (753)
T 3jro_A          159 EEDGEHNGTKESRKFVTGGADN-------LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR--  229 (753)
T ss_dssp             --------CGGGCCEEEEETTS-------CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS--
T ss_pred             ccccccccCCCCCEEEEEECCC-------eEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC--
Confidence                      689999988875       7999999776421 1  112236778899999999   88888777665  


Q ss_pred             cCCCCCCCCCCCCCccEEEEEcCCCC------eEEeccCCCCCCCceecCC--cCCccc
Q 004971          632 SAEPISTPHQYQPYGEIFKIKLDGSD------LKRLTQNSFEDGTPAWGPR--FIRPVD  682 (721)
Q Consensus       632 ~~~~~~~~~~~~~~~~l~~~d~~~~~------~~~lt~~~~~~~~~~~sp~--~l~~~~  682 (721)
                                     .|++||+.+++      ......+...+...+|+|+  .++.+.
T Consensus       230 ---------------~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s  273 (753)
T 3jro_A          230 ---------------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  273 (753)
T ss_dssp             ---------------CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC
T ss_pred             ---------------EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc
Confidence                           39999988763      2222235556788899996  344443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.49  E-value=4.6e-11  Score=125.25  Aligned_cols=252  Identities=10%  Similarity=0.065  Sum_probs=150.6

Q ss_pred             CCcccCceeecCCCCEEEEEEec-----CCCCeeeEEEEECCCCceEEeeccc-C----CCCcccCcEEcCCCCEEEEEE
Q 004971          319 GLHAFTPATSPGNNKFIAVATRR-----PTSSYRHIELFDLVKNKFIELTRFV-S----PKTHHLNPFISPDSSRVGYHK  388 (721)
Q Consensus       319 ~~~~~~~~~sp~dG~~la~~~~~-----~g~~~~~l~l~dl~tg~~~~l~~~~-~----~~~~~~~~~~Spdg~~l~~~~  388 (721)
                      +... .+++|| ||+++++....     ++.....|.++|.++.+...-.... .    .......++|||||++|++..
T Consensus        66 g~~p-~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n  143 (373)
T 2mad_H           66 GFLP-NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQ  143 (373)
T ss_pred             CCCC-CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEe
Confidence            3344 899999 99999886531     1223445889999887643321111 0    012345789999999999876


Q ss_pred             eeCCCCCCCCcceeEEEeccCCCCccee-cccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEE-Ee-------ec
Q 004971          389 CRGGSTREDGNNQLLLENIKSPLPDISL-FRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQ-VY-------FK  457 (721)
Q Consensus       389 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~-l~-------~~  457 (721)
                      ....       ..+.+.+ .+... +.. .... ..+.+.|++++.++.  .++.+.+++. +++... +.       ..
T Consensus       144 ~~~~-------~~v~viD-~t~~~-~~~~i~~~-~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~  212 (373)
T 2mad_H          144 FAAG-------PAVGLVV-QGGSS-DDQLLSSP-TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ  212 (373)
T ss_pred             cCCC-------CeEEEEE-CCCCE-EeEEcCCC-ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc
Confidence            5433       3477777 65422 222 2221 224556777654443  4778888888 665432 11       01


Q ss_pred             -CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-------C---CCCCcceEEccCCCEEE
Q 004971          458 -NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-------N---GKNNAFPSVSPDGKWIV  526 (721)
Q Consensus       458 -~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-------~---~~~~~~~~~SpDg~~l~  526 (721)
                       ....+.+++++..+++.+.       .+  .++.++..+... .....+..       .   ......++++|||++|+
T Consensus       213 p~~~~~~~~~~~~~~~~~~~-------~~--~v~vid~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly  282 (373)
T 2mad_H          213 NLLTQPAQANKSGRIVWPVY-------SG--KILQADISAAGA-TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY  282 (373)
T ss_pred             ceeecceeEecCCEEEEEcC-------Cc--eEEEEeccCCcc-eEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence             1124577888888887752       23  455555543200 01111110       0   11122368999999998


Q ss_pred             EEEeeC-------CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971          527 FRSTRT-------GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR  599 (721)
Q Consensus       527 ~~s~~~-------g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~  599 (721)
                      +.....       ....|+++|.++++.  +..+..+. ....++|||||++++|..+.     +...|.++|+++++..
T Consensus       283 V~~~~~~~~~~~~~~~~V~VID~~t~~v--v~~i~~g~-~p~~i~~s~Dg~~~l~v~~~-----~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          283 LLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQISLGH-DVDAISVAQDGGPDLYALSA-----GTEVLHIYDAGAGDQD  354 (373)
T ss_pred             EEeccCCcccccCCCCeEEEEECCCCEE--EEEEECCC-CcCeEEECCCCCeEEEEEcC-----CCCeEEEEECCCCCEE
Confidence            876421       235899999999885  56665433 35789999999955555542     1238999999998877


Q ss_pred             Ee
Q 004971          600 KL  601 (721)
Q Consensus       600 ~l  601 (721)
                      +.
T Consensus       355 ~~  356 (373)
T 2mad_H          355 QS  356 (373)
T ss_pred             ee
Confidence            65

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.49  E-value=2.5e-12  Score=133.91  Aligned_cols=216  Identities=10%  Similarity=0.046  Sum_probs=140.9

Q ss_pred             cEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEE---------
Q 004971          375 PFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVV---------  444 (721)
Q Consensus       375 ~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~---------  444 (721)
                      ..+.+|+..|+....++.         +.++++..+.............+.++|+   ++.. .++.+.+|         
T Consensus        42 ~~~~~d~~~l~sg~~Dg~---------v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~  109 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGA---------LHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL  109 (343)
T ss_dssp             SSSSEEEEEEEEEEETTE---------EEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE
T ss_pred             hhhcCCCCEEEEECCCCc---------EEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEe
Confidence            345567777777666554         5566665543221211223444566665   3333 24445555         


Q ss_pred             ECCCCce-EEEe---ecCceeeEEcC--CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc-cCCCCCcceE
Q 004971          445 NSDGSNR-RQVY---FKNAFSTVWDP--VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT-TNGKNNAFPS  517 (721)
Q Consensus       445 d~~~g~~-~~l~---~~~~~~~~~sp--dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~~  517 (721)
                      ++.+++. +.+.   .+.+..+.|+|  +++.++..+       .++.+.+|++....     ...... .+...+..++
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-------~dg~i~~wd~~~~~-----~~~~~~~~~~~~i~~~~  177 (343)
T 3lrv_A          110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWAD-------NRGTIGFQSYEDDS-----QYIVHSAKSDVEYSSGV  177 (343)
T ss_dssp             ETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEE-------TTCCEEEEESSSSC-----EEEEECCCSSCCCCEEE
T ss_pred             ecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEe-------CCCcEEEEECCCCc-----EEEEEecCCCCceEEEE
Confidence            5555552 2332   25688999999  999999886       57899999986532     222222 2234577899


Q ss_pred             EccCCCEEEEEEeeCCceeEEEEECCCCcccce-EECcC-CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971          518 VSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGL-HRLTE-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       518 ~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~-~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      |+|||+.|+..+.   +..|++||+.+++.  + ..+.. +...+..++|+|||++|+.++.+        .|.+||+.+
T Consensus       178 ~~pdg~~lasg~~---dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~--------~v~iwd~~~  244 (343)
T 3lrv_A          178 LHKDSLLLALYSP---DGILDVYNLSSPDQ--ASSRFPVDEEAKIKEVKFADNGYWMVVECDQ--------TVVCFDLRK  244 (343)
T ss_dssp             ECTTSCEEEEECT---TSCEEEEESSCTTS--CCEECCCCTTSCEEEEEECTTSSEEEEEESS--------BEEEEETTS
T ss_pred             ECCCCCEEEEEcC---CCEEEEEECCCCCC--CccEEeccCCCCEEEEEEeCCCCEEEEEeCC--------eEEEEEcCC
Confidence            9999999998776   78999999998874  3 45665 66778999999999999988843        799999988


Q ss_pred             CceEEeeec--CCCCCcC--CeEECCCCCEEEEEEe
Q 004971          596 TGLRKLIQS--GSAGRAN--HPYFSPDGKSIVFTSD  627 (721)
Q Consensus       596 ~~~~~l~~~--~~~~~~~--~~~~SpDG~~l~~~~~  627 (721)
                      ++.......  .+...+.  .++|+|+|++|+..+.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          245 DVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             STTCBSSCCCBC-----CCEEEEECTTSSEEEEEET
T ss_pred             CCcceeecccccccccccceEEEECCCCCEEEEecC
Confidence            764322211  0112223  4999999999998776

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.48  E-value=1.6e-13  Score=145.83  Aligned_cols=249  Identities=9%  Similarity=-0.014  Sum_probs=140.3

Q ss_pred             CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEE---eecccCCCCcccCcEEcC--------CCCEEEEEEeeCC
Q 004971          324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIE---LTRFVSPKTHHLNPFISP--------DSSRVGYHKCRGG  392 (721)
Q Consensus       324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~---l~~~~~~~~~~~~~~~Sp--------dg~~l~~~~~~~~  392 (721)
                      ...+++ ++..|+...     .+..|++||+.+++...   +....+|...+..++|+|        ||+.|+..+.++.
T Consensus        94 ~~~~~~-~~~~las~~-----~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t  167 (393)
T 4gq1_A           94 VNSSPV-YSLFLACVC-----QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT  167 (393)
T ss_dssp             ---CCE-EEEEEEEEE-----TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred             eeecCC-CCCEEEEEe-----CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence            344566 777777644     44569999999886432   344567788899999998        8888888776665


Q ss_pred             CCCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCE-EEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEc
Q 004971          393 STREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDR-IAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWD  465 (721)
Q Consensus       393 ~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~-la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~s  465 (721)
                               +.++++.....  .+......+..++|+|++.. |+..+ ++.|.+||+.+++.....   ........++
T Consensus       168 ---------v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s  238 (393)
T 4gq1_A          168 ---------LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT  238 (393)
T ss_dssp             ---------EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEE
T ss_pred             ---------EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEe
Confidence                     45555543321  22222333456799999864 55553 788999999887643221   1111111111


Q ss_pred             CCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEc-cCCCEEEEEEeeCCceeEEEEECCC
Q 004971          466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVS-PDGKWIVFRSTRTGYKNLYIMDAEG  544 (721)
Q Consensus       466 pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S-pDg~~l~~~s~~~g~~~l~~~d~~~  544 (721)
                      ++...+                             ........+...+....|+ |||++|+..+.   +..+.+||+.+
T Consensus       239 ~~~~~~-----------------------------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~---d~~i~vwd~~~  286 (393)
T 4gq1_A          239 LNTLPL-----------------------------VNTCHSSGIASSLANVRWIGSDGSGILAMCK---SGAWLRWNLFA  286 (393)
T ss_dssp             EESGGG-----------------------------C------CCSSSCSEEEEETTTTCEEEEECT---TSEEEEEEC--
T ss_pred             cccccc-----------------------------eeeeecccccccceeeeeecCCCCEEEEEeC---CCCEEEEECcc
Confidence            100000                             0111112233455666775 89999988776   77899999887


Q ss_pred             CcccceEECcCCCcC------------------ceeeEEcc-CCCEEEEEE-ccCCCCCCceeEEEEecCCCceEEeeec
Q 004971          545 GEGYGLHRLTEGPWS------------------DTMCNWSP-DGEWIAFAS-DRDNPGSGSFEMYLIHPNGTGLRKLIQS  604 (721)
Q Consensus       545 g~~~~~~~l~~~~~~------------------~~~~~~Sp-DG~~l~~~~-~~~~~~~~~~~i~~~d~~~~~~~~l~~~  604 (721)
                      ++.  ...+..+...                  .....|+| .++.++.+. .++       .|++||+.+++.......
T Consensus       287 ~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg-------~V~lwd~~~~~~~~~~~~  357 (393)
T 4gq1_A          287 NND--YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHG-------LIQLINTYEKDSNSIPIQ  357 (393)
T ss_dssp             -------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTT-------EEEEEETTCTTCCEEEEE
T ss_pred             CCC--CceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCC-------EEEEEECCCCcEEEEecC
Confidence            653  2222211111                  11233443 344444444 343       899999998876554433


Q ss_pred             CCCCCcCCeEECCCCCEEEEEEecC
Q 004971          605 GSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       605 ~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                       +...+..++|||||++|+..+.++
T Consensus       358 -~~~~V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          358 -LGMPIVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             -CSSCEEEEEECTTSSEEEEEESSE
T ss_pred             -CCCcEEEEEEcCCCCEEEEEeCCC
Confidence             667789999999999999887543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.48  E-value=2.8e-09  Score=118.86  Aligned_cols=404  Identities=11%  Similarity=0.047  Sum_probs=238.9

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcce--EeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceee
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLT--RRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLS  248 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~--~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~  248 (721)
                      ++  .++.|+++.-..         ..|+.+++++...  ..+...-......++.+.++.|+++....           
T Consensus        48 ~~--~~~~ly~sD~~~---------~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~-----------  105 (619)
T 3s94_A           48 VF--SHGLIYWSDVSE---------EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSET-----------  105 (619)
T ss_dssp             ET--TTTEEEEEETTT---------TEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTT-----------
T ss_pred             Ee--CCCEEEEEECCC---------CeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCC-----------
Confidence            66  688888865432         2899998877632  22322212233447888888888865332           


Q ss_pred             eeEEEEEcCCCceeEEEeccCCc---ceeccC-CeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccC
Q 004971          249 TDIYIFLTRDGTQRVKIVENGGW---PCWVDE-STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFT  324 (721)
Q Consensus       249 ~~i~~~d~~~g~~~~l~~~~~~~---~~ws~d-g~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (721)
                      ..|.+.++++...+.+.......   .++.|. |.+|++...   ....|++....+..       ....+.........
T Consensus       106 ~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g---~~~~I~r~~~dG~~-------~~~l~~~~~~~P~G  175 (619)
T 3s94_A          106 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG---EVPKIERAGMDGSS-------RFIIINSEIYWPNG  175 (619)
T ss_dssp             TEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS---SSCEEEEEETTSCS-------CEEEECSSCSSEEE
T ss_pred             CEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC---CCCEEEEEECCCCc-------eEEEEeCCCCCCcE
Confidence            57999999766655555333333   377775 678885322   23467766555432       33333333334567


Q ss_pred             ceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEE
Q 004971          325 PATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLL  404 (721)
Q Consensus       325 ~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~  404 (721)
                      +++++ ++++|+++....    ..|+.+|++....+.+..  ........+++..+  .|+++.....        .++.
T Consensus       176 lald~-~~~~LY~aD~~~----~~I~~~~~dG~~~~~~~~--~~~~~P~gi~~~~~--~ly~td~~~~--------~V~~  238 (619)
T 3s94_A          176 LTLDY-EEQKLYWADAKL----NFIHKSNLDGTNRQAVVK--GSLPHPFALTLFED--ILYWTDWSTH--------SILA  238 (619)
T ss_dssp             EEEET-TTTEEEEEETTT----CCEEEESSSCCEEC-----------CCCEEESSS--EEEEECTTTC--------SEEE
T ss_pred             EEEEc-cCCEEEEEeCCC----CeEEEecCCCCccEEEEe--CCCCCceEEEEeCC--EEEEecCCCC--------EEEE
Confidence            89999 999999875432    459999997655433322  11223345666544  6666432221        1222


Q ss_pred             EeccCCC------------Ccceec----------ccC----------------C-------CCceeCcCC--------C
Q 004971          405 ENIKSPL------------PDISLF----------RFD----------------G-------SFPSFSPKG--------D  431 (721)
Q Consensus       405 ~~~~~~~------------~~~~~~----------~~~----------------~-------~~~~~SpDG--------~  431 (721)
                      .+..++.            ..+...          .+.                .       ....+.+|+        .
T Consensus       239 ~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~  318 (619)
T 3s94_A          239 CNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATE  318 (619)
T ss_dssp             EESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSE
T ss_pred             EECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCce
Confidence            2211110            000000          000                0       011223333        2


Q ss_pred             EEEEEeCCcEEEEECCCCceEE--Ee---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc
Q 004971          432 RIAFVEFPGVYVVNSDGSNRRQ--VY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL  506 (721)
Q Consensus       432 ~la~~~~~~l~v~d~~~g~~~~--l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l  506 (721)
                      .|+|.....|..+++++.....  +.   -..+..++|.+.+..|+++..        ..-.|++++.++.    ....+
T Consensus       319 ~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~--------~~~~I~r~~~~g~----~~~~v  386 (619)
T 3s94_A          319 LLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD--------EVRAIRRSFIDGS----GSQFV  386 (619)
T ss_dssp             EEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEET--------TTTEEEEEETTSC----SCEEE
T ss_pred             EEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeC--------CCCeEEEEEcCCC----ccEEE
Confidence            5666677889999998765322  22   234567889998889998752        3446788887764    33333


Q ss_pred             ccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCC
Q 004971          507 TTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSG  584 (721)
Q Consensus       507 ~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~  584 (721)
                      .... .....+++.+.++.|+++...  ...|.+.++++..   .+.+. ..-.....+++.|....|+++....     
T Consensus       387 ~~~~~~~p~GlAvD~~~~~lY~tD~~--~~~I~v~~~~G~~---~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~-----  456 (619)
T 3s94_A          387 VTAQIAHPDGIAVDWVARNLYWTDTG--TDRIEVTRLNGTM---RKILISEDLEEPRAIVLDPMVGYMYWTDWGE-----  456 (619)
T ss_dssp             ECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSCS---CEEEECTTCCSEEEEEEETTTTEEEEEECSS-----
T ss_pred             EECCCCCcCceEEecccCcEEEEeCC--CCcEEEEeCCCCe---EEEEEECCCCCeeeEEEEcCCCcEEEecCCC-----
Confidence            3322 566788999888999988643  5689999998665   33333 2333457899999877899887542     


Q ss_pred             ceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEec
Q 004971          585 SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT  662 (721)
Q Consensus       585 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt  662 (721)
                      ...|++.++++...+.+... .-.....++++++++.||++....+                .|+.++++|...+.+.
T Consensus       457 ~~~I~r~~~dG~~~~~l~~~-~l~~P~GlalD~~~~~LY~aD~~~~----------------~I~~~~~dG~~~~~~~  517 (619)
T 3s94_A          457 IPKIERAALDGSDRVVLVNT-SLGWPNGLALDYDEGKIYWGDAKTD----------------KIEVMNTDGTGRRVLV  517 (619)
T ss_dssp             SCEEEEEETTSCSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTT----------------EEEEEESSSCCCEEEE
T ss_pred             CCEEEEEccCCCccEEEEeC-CCCCCeeeEEcccCCEEEEEECCCC----------------EEEEEecCCCceEEEe
Confidence            24899999988766655432 2345677899999999999876654                4999999888766554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.47  E-value=1.2e-10  Score=128.51  Aligned_cols=300  Identities=10%  Similarity=0.021  Sum_probs=177.9

Q ss_pred             CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECC--CCceEEeecccCCCCcccCcEEc----CCCCEEEEEEeeCC
Q 004971          319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLV--KNKFIELTRFVSPKTHHLNPFIS----PDSSRVGYHKCRGG  392 (721)
Q Consensus       319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~--tg~~~~l~~~~~~~~~~~~~~~S----pdg~~l~~~~~~~~  392 (721)
                      +...+.+.+|| ||++++... .    +..|.++|+.  +++..  .... .......+++|    |||+++++......
T Consensus       196 g~~p~~v~~Sp-DGr~lyv~~-~----dg~V~viD~~~~t~~~v--~~i~-~G~~P~~ia~s~~~~pDGk~l~v~n~~~~  266 (567)
T 1qks_A          196 GYAVHISRLSA-SGRYLFVIG-R----DGKVNMIDLWMKEPTTV--AEIK-IGSEARSIETSKMEGWEDKYAIAGAYWPP  266 (567)
T ss_dssp             SSCEEEEEECT-TSCEEEEEE-T----TSEEEEEETTSSSCCEE--EEEE-CCSEEEEEEECCSTTCTTTEEEEEEEETT
T ss_pred             CCCccceEECC-CCCEEEEEc-C----CCeEEEEECCCCCCcEe--EEEe-cCCCCceeEEccccCCCCCEEEEEEccCC
Confidence            33456889999 999887653 2    3459999996  55532  2221 13345678999    79999999877654


Q ss_pred             CCCCCCcceeEEEeccCCCCcceeccc--------------CCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe-
Q 004971          393 STREDGNNQLLLENIKSPLPDISLFRF--------------DGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY-  455 (721)
Q Consensus       393 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~-  455 (721)
                              .+.+.+..+.. .+.....              ....+..|+++..+++.  ..+.|+++|....+...+. 
T Consensus       267 --------~v~ViD~~t~~-~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~  337 (567)
T 1qks_A          267 --------QYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE  337 (567)
T ss_dssp             --------EEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE
T ss_pred             --------eEEEEECCCCc-EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee
Confidence                    34555543321 1111110              11234567887766665  3678999998765422222 


Q ss_pred             ---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceE-Eccc-CC--CCCcceE-EccCCCEEEE
Q 004971          456 ---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVR-RLTT-NG--KNNAFPS-VSPDGKWIVF  527 (721)
Q Consensus       456 ---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~l~~-~~--~~~~~~~-~SpDg~~l~~  527 (721)
                         ........|+|||++++++..      ..+++.+  ++..+.    ++. .+.. ..  ....... ++|++..+++
T Consensus       338 i~~~~~~~d~~~~pdgr~~~va~~------~sn~V~V--iD~~t~----kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~  405 (567)
T 1qks_A          338 ISAERFLHDGGLDGSHRYFITAAN------ARNKLVV--IDTKEG----KLVAIEDTGGQTPHPGRGANFVHPTFGPVWA  405 (567)
T ss_dssp             EECCSSEEEEEECTTSCEEEEEEG------GGTEEEE--EETTTT----EEEEEEECSSSSBCCTTCEEEEETTTEEEEE
T ss_pred             eeccccccCceECCCCCEEEEEeC------CCCeEEE--EECCCC----cEEEEEeccCcCCCCccceeeECCCCCcEEE
Confidence               234457889999999999873      2344444  566553    332 2322 11  1112334 5898888766


Q ss_pred             EEeeCCceeEEEEECCCCc-----ccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC-----c
Q 004971          528 RSTRTGYKNLYIMDAEGGE-----GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT-----G  597 (721)
Q Consensus       528 ~s~~~g~~~l~~~d~~~g~-----~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~-----~  597 (721)
                      .+. -+...|.++|.+++.     .+.+..+.........+..+||+++|++...-.........|.++|+++.     .
T Consensus       406 t~~-~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~  484 (567)
T 1qks_A          406 TSH-MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD  484 (567)
T ss_dssp             EEB-SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC
T ss_pred             eCC-CCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccC
Confidence            553 234679999988732     22355554332222457789999998876632100000237999998765     2


Q ss_pred             -eEEeeec-------CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEe
Q 004971          598 -LRKLIQS-------GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL  661 (721)
Q Consensus       598 -~~~l~~~-------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l  661 (721)
                       ...+...       .....+.++.|+|||++|+++.-.....            .+.|.++|.++.+++..
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~------------~~~i~v~D~~t~~~~~~  544 (567)
T 1qks_A          485 PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQ------------ESALVVVDDKTLELKHV  544 (567)
T ss_dssp             CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTS------------CCEEEEEETTTTEEEEE
T ss_pred             CCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCC------------CCcEEEEECCCceEEEE
Confidence             1122211       1234567899999999998874321100            13599999999877543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.43  E-value=1.5e-11  Score=124.89  Aligned_cols=244  Identities=14%  Similarity=0.134  Sum_probs=154.2

Q ss_pred             cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCC
Q 004971          371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGS  449 (721)
Q Consensus       371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g  449 (721)
                      ...+++|+|+|+.|+++.....        .++.++..++...+.........++++|||+.++... ...|++||..++
T Consensus        29 ~~eg~~~d~~g~~l~~~~~~~~--------~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g  100 (296)
T 3e5z_A           29 WTEGPVYVPARSAVIFSDVRQN--------RTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG  100 (296)
T ss_dssp             SEEEEEEEGGGTEEEEEEGGGT--------EEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred             cccCCeEeCCCCEEEEEeCCCC--------EEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence            3457999999997777654433        4677776554111111112234578999998655443 478999999888


Q ss_pred             ceEEEee-------cCceeeEEcCCCCeEEEEec-CC-------CCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCc
Q 004971          450 NRRQVYF-------KNAFSTVWDPVREAVVYTSG-GP-------EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNA  514 (721)
Q Consensus       450 ~~~~l~~-------~~~~~~~~spdg~~la~~~~-~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  514 (721)
                      +.+.+..       ..+..++++|+|+.++.... +.       ..........||.++.++     ....+........
T Consensus       101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g-----~~~~~~~~~~~~~  175 (296)
T 3e5z_A          101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG-----TLSAPIRDRVKPN  175 (296)
T ss_dssp             CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS-----CEEEEECCCSSEE
T ss_pred             cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCC-----CEEEeecCCCCCc
Confidence            7666541       23457999999975443210 00       000112245788888763     4455544444567


Q ss_pred             ceEEccCCCEEEEEEeeCCceeEEEEECC-CCcc-cceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEe
Q 004971          515 FPSVSPDGKWIVFRSTRTGYKNLYIMDAE-GGEG-YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH  592 (721)
Q Consensus       515 ~~~~SpDg~~l~~~s~~~g~~~l~~~d~~-~g~~-~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d  592 (721)
                      .++|+|||+.| +....  ...|++|+++ +|+. .....+.........+++++||+ |+++. ..       .|++|+
T Consensus       176 gi~~s~dg~~l-v~~~~--~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~-~~-------~v~~~~  243 (296)
T 3e5z_A          176 GLAFLPSGNLL-VSDTG--DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA-GD-------GVHVLT  243 (296)
T ss_dssp             EEEECTTSCEE-EEETT--TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE-TT-------EEEEEC
T ss_pred             cEEECCCCCEE-EEeCC--CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc-CC-------eEEEEC
Confidence            79999999998 55432  4689999986 4542 11122222223346789999998 44444 32       799999


Q ss_pred             cCCCceEEeeecCCCCCcCCeEE-CCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEE
Q 004971          593 PNGTGLRKLIQSGSAGRANHPYF-SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR  660 (721)
Q Consensus       593 ~~~~~~~~l~~~~~~~~~~~~~~-SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  660 (721)
                      .++.....+..  ... +..++| +|||+.|++++.+                  .||.+++++++++.
T Consensus       244 ~~g~~~~~~~~--~~~-~~~~~f~~~d~~~L~v~t~~------------------~l~~~~~~~~~~~~  291 (296)
T 3e5z_A          244 PDGDELGRVLT--PQT-TSNLCFGGPEGRTLYMTVST------------------EFWSIETNVRGLEH  291 (296)
T ss_dssp             TTSCEEEEEEC--SSC-CCEEEEESTTSCEEEEEETT------------------EEEEEECSCCBCCC
T ss_pred             CCCCEEEEEEC--CCC-ceeEEEECCCCCEEEEEcCC------------------eEEEEEcccccccc
Confidence            98544444432  334 788899 6999999887754                  29999998876654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.42  E-value=2.2e-11  Score=123.80  Aligned_cols=235  Identities=10%  Similarity=0.001  Sum_probs=153.1

Q ss_pred             ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCce
Q 004971          372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNR  451 (721)
Q Consensus       372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~  451 (721)
                      ..++.|+|+++.|+++....        ..++.++..++.............+++++||+ |++.....|+++|.++++.
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~--------~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~-l~v~~~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPA--------KKVCRWDSFTKQVQRVTMDAPVSSVALRQSGG-YVATIGTKFCALNWKEQSA   85 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTT--------TEEEEEETTTCCEEEEECSSCEEEEEEBTTSS-EEEEETTEEEEEETTTTEE
T ss_pred             ccCCeEECCCCEEEEEECCC--------CEEEEEECCCCcEEEEeCCCceEEEEECCCCC-EEEEECCeEEEEECCCCcE
Confidence            34689999988988865433        35777777655332222233345678999998 5555678999999998887


Q ss_pred             EEEee-------cCceeeEEcCCCCeEEEEecCCCC---CCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC
Q 004971          452 RQVYF-------KNAFSTVWDPVREAVVYTSGGPEF---ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD  521 (721)
Q Consensus       452 ~~l~~-------~~~~~~~~spdg~~la~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD  521 (721)
                      +.+..       ..+..+.++|||+ ++++......   ........||.++.++     ....+.........++|+||
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-----~~~~~~~~~~~pngi~~spd  159 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDH-----HVKKYFDQVDISNGLDWSLD  159 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTS-----CEEEEEEEESBEEEEEECTT
T ss_pred             EEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCC-----CEEEEeeccccccceEEcCC
Confidence            66652       1245689999998 4554321100   0123456899988754     33333333334567899999


Q ss_pred             CCEEEEEEeeCCceeEEEEEC--CCCcccc---eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971          522 GKWIVFRSTRTGYKNLYIMDA--EGGEGYG---LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       522 g~~l~~~s~~~g~~~l~~~d~--~~g~~~~---~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                      |+.|++....  ...|+++++  .+|....   ...+.........+++++||+ |+++....      ..|++||.+++
T Consensus       160 g~~lyv~~~~--~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~------~~v~~~d~~tG  230 (297)
T 3g4e_A          160 HKIFYYIDSL--SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNG------GRVIRLDPVTG  230 (297)
T ss_dssp             SCEEEEEEGG--GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETT------TEEEEECTTTC
T ss_pred             CCEEEEecCC--CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCC------CEEEEEcCCCc
Confidence            9999888753  457888876  5565311   122222223446789999996 55554432      27999999877


Q ss_pred             ceEEeeecCCCCCcCCeEEC-CCCCEEEEEEecCCC
Q 004971          597 GLRKLIQSGSAGRANHPYFS-PDGKSIVFTSDYGGI  631 (721)
Q Consensus       597 ~~~~l~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~  631 (721)
                      +....... ....+.+++|+ ||++.|++++...+.
T Consensus       231 ~~~~~i~~-p~~~~t~~~f~g~d~~~L~vt~~~~~~  265 (297)
T 3g4e_A          231 KRLQTVKL-PVDKTTSCCFGGKNYSEMYVTCARDGM  265 (297)
T ss_dssp             CEEEEEEC-SSSBEEEEEEESGGGCEEEEEEBCTTC
T ss_pred             eEEEEEEC-CCCCceEEEEeCCCCCEEEEEcCCcCC
Confidence            76554443 33567889998 999999999887653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.42  E-value=8.1e-11  Score=118.54  Aligned_cols=254  Identities=9%  Similarity=0.036  Sum_probs=143.6

Q ss_pred             eEEEEECCCCc-eEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC---CCcceeccc-CCC
Q 004971          348 HIELFDLVKNK-FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP---LPDISLFRF-DGS  422 (721)
Q Consensus       348 ~l~l~dl~tg~-~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~-~~~  422 (721)
                      .+.+|+..++. .+.+.....+...+..+.++||-.-|+.+.-.+-..     ..+...-+...   ..+...... ...
T Consensus        64 ~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~v~sla~spd~~~~~~~l~s~g~~~~  138 (356)
T 2w18_A           64 VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEI-----REIRALFCSSDDESEKQVLLKSGNIKA  138 (356)
T ss_dssp             EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSE-----EEEEEECC------CCEEEEEEEEEEE
T ss_pred             eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccc-----cceEEEEECCCccccccEEEeCCCeEE
Confidence            38899988772 235555555666677788888776665543322210     01111111100   001000000 000


Q ss_pred             CceeCcCCCEEEEEe---CCcEEEEEC-CCCce-EEEe--ecCceeeEEcC---CCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971          423 FPSFSPKGDRIAFVE---FPGVYVVNS-DGSNR-RQVY--FKNAFSTVWDP---VREAVVYTSGGPEFASESSEVDIISI  492 (721)
Q Consensus       423 ~~~~SpDG~~la~~~---~~~l~v~d~-~~g~~-~~l~--~~~~~~~~~sp---dg~~la~~~~~~~~~~~~~~~~i~~~  492 (721)
                      -..+ ++|+.+....   +..|.+|++ ..|+. ..+.  ...+..++|+|   |+..|+..+       .++.++||++
T Consensus       139 v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS-------~D~TIkIWDl  210 (356)
T 2w18_A          139 VLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT-------IMNNIVIWNL  210 (356)
T ss_dssp             EEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEE-------TTSEEEEEET
T ss_pred             EEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEec-------CCCcEEEEEC
Confidence            0112 3343333322   667888887 33443 2222  45566778888   667787776       6899999998


Q ss_pred             EccCCCCccceEEcccCCC---CCcceEEccCCCEEEEEEe---------eCCceeEEEEECCCCcccceEEC----cCC
Q 004971          493 NVDDVDGVSAVRRLTTNGK---NNAFPSVSPDGKWIVFRST---------RTGYKNLYIMDAEGGEGYGLHRL----TEG  556 (721)
Q Consensus       493 ~~~~~~~~~~~~~l~~~~~---~~~~~~~SpDg~~l~~~s~---------~~g~~~l~~~d~~~g~~~~~~~l----~~~  556 (721)
                      ....     ..+.+..+..   .+...+|||||+.++..+.         ...+..|.+||+.+++.  +..+    ..+
T Consensus       211 ~TGk-----~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~--l~v~~~~~p~G  283 (356)
T 2w18_A          211 KTGQ-----LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS--VGVMLYCLPPG  283 (356)
T ss_dssp             TTCC-----EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE--EEEEEECCCTT
T ss_pred             CCCc-----EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE--EEEEEeeccCC
Confidence            6543     5566654432   3344589999998876442         12367899999998874  2222    111


Q ss_pred             CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcC-CeEECCCCCEEEEEEecCC
Q 004971          557 PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       557 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~~~SpDG~~l~~~~~~~~  630 (721)
                      .. ...+..+.+|..++.++.++       .|++||+.+++....... +...+. .++|||||++|+..+.+..
T Consensus       284 h~-~~~lsg~~sg~~lASgS~Dg-------TIkIWDl~tGk~l~tL~g-H~~~vvs~vafSPDG~~LaSGS~D~T  349 (356)
T 2w18_A          284 QA-GRFLEGDVKDHCAAAILTSG-------TIAIWDLLLGQCTALLPP-VSDQHWSFVKWSGTDSHLLAGQKDGN  349 (356)
T ss_dssp             CC-CCEEEEEEETTEEEEEETTS-------CEEEEETTTCSEEEEECC-C--CCCCEEEECSSSSEEEEECTTSC
T ss_pred             Cc-ceeEccccCCCEEEEEcCCC-------cEEEEECCCCcEEEEecC-CCCCeEEEEEECCCCCEEEEEECCCc
Confidence            11 11233344477777777664       899999999987665542 444444 5899999999998776653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.41  E-value=6.1e-11  Score=125.82  Aligned_cols=272  Identities=11%  Similarity=0.024  Sum_probs=143.2

Q ss_pred             ccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEE--Eec-cC--C---cceecc--------CCeEEEE
Q 004971          220 SPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVK--IVE-NG--G---WPCWVD--------ESTLFFH  283 (721)
Q Consensus       220 ~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l--~~~-~~--~---~~~ws~--------dg~l~~~  283 (721)
                      ...+++++++||.++.+.            .|.+|+..+++....  ... .+  +   ..+|+|        ||+++++
T Consensus        94 ~~~~~~~~~~las~~~d~------------~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las  161 (393)
T 4gq1_A           94 VNSSPVYSLFLACVCQDN------------TVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIAS  161 (393)
T ss_dssp             ---CCEEEEEEEEEETTS------------CEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEE
T ss_pred             eeecCCCCCEEEEEeCCC------------cEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEE
Confidence            335777888999877554            477788877765432  211 11  1   347887        7787774


Q ss_pred             eccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCE-EEEEEecCCCCeeeEEEEECCCCceEEe
Q 004971          284 RKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKF-IAVATRRPTSSYRHIELFDLVKNKFIEL  362 (721)
Q Consensus       284 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~-la~~~~~~g~~~~~l~l~dl~tg~~~~l  362 (721)
                      .  ..|+.+.||++....         ....+..+...+..++|+| ++.. |+...     .+..|++||+.+++....
T Consensus       162 ~--s~D~tv~~Wd~~~~~---------~~~~~~~~~~~v~~v~~~p-~~~~~l~~~~-----~d~~v~~wd~~t~~~~~~  224 (393)
T 4gq1_A          162 V--GDDCTLIIWRLTDEG---------PILAGYPLSSPGISVQFRP-SNPNQLIVGE-----RNGNIRIFDWTLNLSAEE  224 (393)
T ss_dssp             E--ETTSEEEEEEEETTE---------EEEEEEECSSCEEEEEEET-TEEEEEEEEE-----TTSEEEEEETTCCC----
T ss_pred             E--ECCCeEEEEECCCCc---------eeeeecCCCCCcEEEEECC-CCCceEEecC-----CCCEEEEEECCCCccccc
Confidence            3  338999999765433         3444445555677899999 9864 44432     345699999998763221


Q ss_pred             ecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCcee-CcCCCEEEEEe-CCc
Q 004971          363 TRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSF-SPKGDRIAFVE-FPG  440 (721)
Q Consensus       363 ~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-SpDG~~la~~~-~~~  440 (721)
                      .  ...........++++...+.                 ......+..       .....+.| +|||+.|+... ++.
T Consensus       225 ~--~~~~~~~~~~~~s~~~~~~~-----------------~~~~~~~~~-------~~v~~v~~~~~dg~~l~s~s~d~~  278 (393)
T 4gq1_A          225 N--SQTELVKNPWLLTLNTLPLV-----------------NTCHSSGIA-------SSLANVRWIGSDGSGILAMCKSGA  278 (393)
T ss_dssp             --------CSCCCSEEEESGGGC-----------------------CCS-------SSCSEEEEETTTTCEEEEECTTSE
T ss_pred             c--cccCCcccceEEecccccce-----------------eeeeccccc-------ccceeeeeecCCCCEEEEEeCCCC
Confidence            1  11111111111111110000                 000001111       11223455 48999988874 778


Q ss_pred             EEEEECCCCceEE-Ee--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceE
Q 004971          441 VYVVNSDGSNRRQ-VY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPS  517 (721)
Q Consensus       441 l~v~d~~~g~~~~-l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~  517 (721)
                      +.+||+..+.... +.  ...+....++|++                                   +.+.... ......
T Consensus       279 i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~-~~~~~~  322 (393)
T 4gq1_A          279 WLRWNLFANNDYNEISDSTMKLGPKNLLPNV-----------------------------------QGISLFP-SLLGAC  322 (393)
T ss_dssp             EEEEEC-------------------CCSCSE-----------------------------------EEECSSC-CSSCCE
T ss_pred             EEEEECccCCCCceEeeecCccccEEEcccc-----------------------------------ccccccC-cceeEE
Confidence            9999997665322 21  1122222233322                                   1122222 222234


Q ss_pred             Ecc-CCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971          518 VSP-DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN  594 (721)
Q Consensus       518 ~Sp-Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~  594 (721)
                      |+| .++.++.....  +..|++||..+++.  ...+..+...+..++|||||++||+++.+        .+.+|.+.
T Consensus       323 ~~~~~~~~~~~sgs~--Dg~V~lwd~~~~~~--~~~~~~~~~~V~svafspdG~~LA~as~~--------Gv~lvrL~  388 (393)
T 4gq1_A          323 PHPRYMDYFATAHSQ--HGLIQLINTYEKDS--NSIPIQLGMPIVDFCWHQDGSHLAIATEG--------SVLLTRLM  388 (393)
T ss_dssp             ECSSCTTEEEEEETT--TTEEEEEETTCTTC--CEEEEECSSCEEEEEECTTSSEEEEEESS--------EEEEEEEG
T ss_pred             EccCCCCEEEEEECC--CCEEEEEECCCCcE--EEEecCCCCcEEEEEEcCCCCEEEEEeCC--------CeEEEEEe
Confidence            444 34444444322  67899999998875  44455566678899999999999999876        56666653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.41  E-value=5.1e-08  Score=108.69  Aligned_cols=409  Identities=14%  Similarity=0.115  Sum_probs=228.6

Q ss_pred             cCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecC-CCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEE
Q 004971          175 SGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTP-YGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYI  253 (721)
Q Consensus       175 dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~-~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~  253 (721)
                      .++.|+++....         ..|...+++|...+.|.. .-..-...++.|.+.+|+|+....          ...|++
T Consensus        94 ~~~~ly~~d~~~---------~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~----------~~~I~r  154 (619)
T 3s94_A           94 LGEKLYWTDSET---------NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGE----------VPKIER  154 (619)
T ss_dssp             TTTEEEEEETTT---------TEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSS----------SCEEEE
T ss_pred             cCCEEEEEeCCC---------CEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCC----------CCEEEE
Confidence            578788865442         289999998876665532 112223447888877888864322          268999


Q ss_pred             EEcCCCceeEEEeccCCcc---eeccC-CeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCC-CCCcccCceee
Q 004971          254 FLTRDGTQRVKIVENGGWP---CWVDE-STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP-PGLHAFTPATS  328 (721)
Q Consensus       254 ~d~~~g~~~~l~~~~~~~~---~ws~d-g~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s  328 (721)
                      .++++...+.+.......|   +..++ +++|++  +.  +...|+.+...+..        .+.+.. .......+++ 
T Consensus       155 ~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~a--D~--~~~~I~~~~~dG~~--------~~~~~~~~~~~P~gi~~-  221 (619)
T 3s94_A          155 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA--DA--KLNFIHKSNLDGTN--------RQAVVKGSLPHPFALTL-  221 (619)
T ss_dssp             EETTSCSCEEEECSSCSSEEEEEEETTTTEEEEE--ET--TTCCEEEESSSCCE--------EC---------CCCEEE-
T ss_pred             EECCCCceEEEEeCCCCCCcEEEEEccCCEEEEE--eC--CCCeEEEecCCCCc--------cEEEEeCCCCCceEEEE-
Confidence            9997666666654444444   67765 678884  22  22345644444322        222221 1122345566 


Q ss_pred             cCCCCEEEEEEecCCCCeeeEEEEECCCCceEE-eecc-------------cCCCC---------cccCc-EEcCCCCEE
Q 004971          329 PGNNKFIAVATRRPTSSYRHIELFDLVKNKFIE-LTRF-------------VSPKT---------HHLNP-FISPDSSRV  384 (721)
Q Consensus       329 p~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~-l~~~-------------~~~~~---------~~~~~-~~Spdg~~l  384 (721)
                        ++++|++....    ...|+..|..+|+... +...             ..+..         ..... ..+|.+.. 
T Consensus       222 --~~~~ly~td~~----~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~-  294 (619)
T 3s94_A          222 --FEDILYWTDWS----THSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF-  294 (619)
T ss_dssp             --SSSEEEEECTT----TCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTS-
T ss_pred             --eCCEEEEecCC----CCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCC-
Confidence              55678775432    2348889987775322 1100             00000         00001 11221100 


Q ss_pred             EEEEeeCCCC--------CCCCc--------ceeEEEeccCCCC-cceec-c--cCCCCceeCcCCCEEEEEe--CCcEE
Q 004971          385 GYHKCRGGST--------REDGN--------NQLLLENIKSPLP-DISLF-R--FDGSFPSFSPKGDRIAFVE--FPGVY  442 (721)
Q Consensus       385 ~~~~~~~~~~--------~~~~~--------~~l~~~~~~~~~~-~~~~~-~--~~~~~~~~SpDG~~la~~~--~~~l~  442 (721)
                      +......+..        .....        ..+...++..... .+... .  .....+++.+.+.+|+++.  ...|+
T Consensus       295 ~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~  374 (619)
T 3s94_A          295 YQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIR  374 (619)
T ss_dssp             EEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEE
Confidence            0111111100        00000        1123333333211 11110 0  1122356777777888884  67899


Q ss_pred             EEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEE
Q 004971          443 VVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSV  518 (721)
Q Consensus       443 v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~  518 (721)
                      .+++++.....+.   ...+..+++.+.++.|+++..        ..-.|..+++++.    ..+.+.... .....+++
T Consensus       375 r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~--------~~~~I~v~~~~G~----~~~~l~~~~l~~P~~iav  442 (619)
T 3s94_A          375 RSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDT--------GTDRIEVTRLNGT----MRKILISEDLEEPRAIVL  442 (619)
T ss_dssp             EEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET--------TTTEEEEEETTSC----SCEEEECTTCCSEEEEEE
T ss_pred             EEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeC--------CCCcEEEEeCCCC----eEEEEEECCCCCeeeEEE
Confidence            9999887655554   245678899888999998852        2335556666654    344444332 46677899


Q ss_pred             ccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971          519 SPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG  597 (721)
Q Consensus       519 SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~  597 (721)
                      .|...+|+++.... ...|++.++++..   ...+. ..-.....++++++++.|+++....      ..|+.+++++..
T Consensus       443 dp~~G~ly~tD~g~-~~~I~r~~~dG~~---~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~------~~I~~~~~dG~~  512 (619)
T 3s94_A          443 DPMVGYMYWTDWGE-IPKIERAALDGSD---RVVLVNTSLGWPNGLALDYDEGKIYWGDAKT------DKIEVMNTDGTG  512 (619)
T ss_dssp             ETTTTEEEEEECSS-SCEEEEEETTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEETTT------TEEEEEESSSCC
T ss_pred             EcCCCcEEEecCCC-CCEEEEEccCCCc---cEEEEeCCCCCCeeeEEcccCCEEEEEECCC------CEEEEEecCCCc
Confidence            99888898887532 4689999998655   23332 2233457899999999999998653      389999998877


Q ss_pred             eEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          598 LRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       598 ~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      .+.+... .-.....++..  +.+||++.....                .|+++|..+++.+.+..
T Consensus       513 ~~~~~~~-~l~~P~glav~--~~~ly~tD~~~~----------------~I~~~~k~~g~~~~~~~  559 (619)
T 3s94_A          513 RRVLVED-KIPHIFGFTLL--GDYVYWTDWQRR----------------SIERVHKRSAEREVIID  559 (619)
T ss_dssp             CEEEEEC-CCCSSCCEEEE--TTEEEEECTTSS----------------CEEEEESSSCCEEEEEC
T ss_pred             eEEEecc-CCCCcEEEEEE--CCEEEEeecCCC----------------eEEEEEcCCCceEEEec
Confidence            6666532 22233455554  448888765443                49999988886555543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.41  E-value=4.1e-11  Score=129.08  Aligned_cols=253  Identities=13%  Similarity=0.057  Sum_probs=173.5

Q ss_pred             EEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEE
Q 004971          376 FISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQV  454 (721)
Q Consensus       376 ~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l  454 (721)
                      ++++|++.|+....++.         +.++++.++............-.+++.|++.|+..+ ++.|.+||+.+++....
T Consensus       138 ~~~~d~~~l~~g~~dg~---------i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~  208 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNT---------IKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNT  208 (435)
T ss_dssp             EEECCSSEEEEEESSSC---------EEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred             EEEECCCEEEEEeCCCe---------EEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            45668999888766555         555665544221111111122224445888888875 78999999998875443


Q ss_pred             e---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEee
Q 004971          455 Y---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR  531 (721)
Q Consensus       455 ~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~  531 (721)
                      .   ...+..+.|++  ..++..+       .++.+.+|++.....  ......+..+...+..+.|  ++++|+..+. 
T Consensus       209 ~~~h~~~v~~l~~~~--~~l~s~s-------~dg~i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~-  274 (435)
T 1p22_A          209 LIHHCEAVLHLRFNN--GMMVTCS-------KDRSIAVWDMASPTD--ITLRRVLVGHRAAVNVVDF--DDKYIVSASG-  274 (435)
T ss_dssp             ECCCCSCEEEEECCT--TEEEEEE-------TTSCEEEEECSSSSC--CEEEEEECCCSSCEEEEEE--ETTEEEEEET-
T ss_pred             EcCCCCcEEEEEEcC--CEEEEee-------CCCcEEEEeCCCCCC--ceeeeEecCCCCcEEEEEe--CCCEEEEEeC-
Confidence            3   45667778864  4777765       578999998875432  0011344455555555666  8899998887 


Q ss_pred             CCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcC
Q 004971          532 TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN  611 (721)
Q Consensus       532 ~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~  611 (721)
                        +..|.+||+.+++.  +..+..+...+..+.|  +++.|+.++.++       .|++||+.+++....... +...+.
T Consensus       275 --dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~g~~dg-------~i~iwd~~~~~~~~~~~~-h~~~v~  340 (435)
T 1p22_A          275 --DRTIKVWNTSTCEF--VRTLNGHKRGIACLQY--RDRLVVSGSSDN-------TIRLWDIECGACLRVLEG-HEELVR  340 (435)
T ss_dssp             --TSEEEEEETTTCCE--EEEEECCSSCEEEEEE--ETTEEEEEETTS-------CEEEEETTTCCEEEEECC-CSSCEE
T ss_pred             --CCeEEEEECCcCcE--EEEEcCCCCcEEEEEe--CCCEEEEEeCCC-------eEEEEECCCCCEEEEEeC-CcCcEE
Confidence              78899999998875  5566666666666666  578888888775       899999998876655543 666677


Q ss_pred             CeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC----------eEEeccCCCCCCCceecCCcCCcc
Q 004971          612 HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD----------LKRLTQNSFEDGTPAWGPRFIRPV  681 (721)
Q Consensus       612 ~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~----------~~~lt~~~~~~~~~~~sp~~l~~~  681 (721)
                      .++|  |+++|+..+.++                 .|.+||+.+++          ...+..+...+...+|.+..++.+
T Consensus       341 ~~~~--~~~~l~sg~~dg-----------------~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~  401 (435)
T 1p22_A          341 CIRF--DNKRIVSGAYDG-----------------KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSS  401 (435)
T ss_dssp             EEEC--CSSEEEEEETTS-----------------CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEEC
T ss_pred             EEEe--cCCEEEEEeCCC-----------------cEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEE
Confidence            7777  788888877665                 39999986543          567777888888899977777766


Q ss_pred             ccc
Q 004971          682 DVE  684 (721)
Q Consensus       682 ~~~  684 (721)
                      ..+
T Consensus       402 s~D  404 (435)
T 1p22_A          402 SHD  404 (435)
T ss_dssp             CSS
T ss_pred             eCC
Confidence            644

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.39  E-value=3.2e-08  Score=110.45  Aligned_cols=413  Identities=10%  Similarity=0.066  Sum_probs=241.5

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCC-CCccccccCCCCCEEEEEecCCCCCCcccceeee
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYG-VADFSPAVSPSGKYTAVASYGNKGWDGEVEMLST  249 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~-~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~  249 (721)
                      .+  +++.|+++....         ..|+++++++...+.+...+ ......++.+.+..|+++....           .
T Consensus        45 d~--~~~~lywtD~~~---------~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~-----------~  102 (628)
T 4a0p_A           45 DV--TDNRIYWTDISL---------KTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGT-----------N  102 (628)
T ss_dssp             ET--TTTEEEEEETTT---------TEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTT-----------T
T ss_pred             EC--CCCEEEEEECCC---------CeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCC-----------C
Confidence            66  778788765442         28999999887666553322 2233446777788888864322           5


Q ss_pred             eEEEEEcCCCceeEEEeccCCcc---eecc-CCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCc
Q 004971          250 DIYIFLTRDGTQRVKIVENGGWP---CWVD-ESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTP  325 (721)
Q Consensus       250 ~i~~~d~~~g~~~~l~~~~~~~~---~ws~-dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (721)
                      .|.+.++++...+.+.......|   +..| +|.+|++..   .....|+++...+..        ...+.........+
T Consensus       103 ~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~---g~~~~I~r~~~dG~~--------~~~l~~~~~~P~Gl  171 (628)
T 4a0p_A          103 RIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW---GGKPKIDRAAMDGSE--------RTTLVPNVGRANGL  171 (628)
T ss_dssp             EEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC---SSSCEEEEEETTSCS--------CEEEECSCSSEEEE
T ss_pred             EEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC---CCCCEEEEEeCCCCc--------eEEEECCCCCcceE
Confidence            89999997766555553333333   6776 477888432   124467766655432        23333333345678


Q ss_pred             eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC----CCCCcc-
Q 004971          326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST----REDGNN-  400 (721)
Q Consensus       326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~----~~~~~~-  400 (721)
                      ++++ ++++|+++....    ..|+.+|+++...+.+..   .......+++.  +.+|+++......-    ...+.. 
T Consensus       172 alD~-~~~~LY~aD~~~----~~I~~~d~dG~~~~v~~~---~l~~P~glav~--~~~ly~tD~~~~~I~~~dk~tg~~~  241 (628)
T 4a0p_A          172 TIDY-AKRRLYWTDLDT----NLIESSNMLGLNREVIAD---DLPHPFGLTQY--QDYIYWTDWSRRSIERANKTSGQNR  241 (628)
T ss_dssp             EEET-TTTEEEEEETTT----TEEEEEETTSCSCEEEEE---CCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             EEcc-ccCEEEEEECCC----CEEEEEcCCCCceEEeec---cCCCceEEEEE--CCEEEEecCCCCEEEEEECCCCCce
Confidence            9999 999999875432    359999997655433321   12233345554  45676654322100    000100 


Q ss_pred             -----------eeEEEecc-C-CCCccee--ccc-------C-C-------CCceeCcCC-------CEEEEEeCCcEEE
Q 004971          401 -----------QLLLENIK-S-PLPDISL--FRF-------D-G-------SFPSFSPKG-------DRIAFVEFPGVYV  443 (721)
Q Consensus       401 -----------~l~~~~~~-~-~~~~~~~--~~~-------~-~-------~~~~~SpDG-------~~la~~~~~~l~v  443 (721)
                                 .+.+.... . ....-..  ..+       . +       ......+|+       ..|+|.....|..
T Consensus       242 ~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~  321 (628)
T 4a0p_A          242 TIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINR  321 (628)
T ss_dssp             EEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEE
T ss_pred             EEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEE
Confidence                       11111100 0 0000000  000       0 0       012334444       3566667777887


Q ss_pred             EECCCCce--EEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc------CCCC
Q 004971          444 VNSDGSNR--RQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT------NGKN  512 (721)
Q Consensus       444 ~d~~~g~~--~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~------~~~~  512 (721)
                      +.++....  ..+.   ...+..++|.+....|+++-.        ..-.|+++..++.   .....+..      ....
T Consensus       322 i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~--------~~~~I~r~~~~g~---~~~~v~~~~~~~~~~~~~  390 (628)
T 4a0p_A          322 MVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDS--------RQNMIRKAQEDGS---QGFTVVVSSVPSQNLEIQ  390 (628)
T ss_dssp             ECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEET--------TTTEEEEEETTSC---SCEEEEC--------CCC
T ss_pred             EecccccCceEEEEehhcCCceEEEEecCCCeEEEEec--------CcceEEEEEcCCC---CceEEEEcccccccccCC
Confidence            77765431  1222   234667899999999998742        3445677776654   12223332      1235


Q ss_pred             CcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEE
Q 004971          513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI  591 (721)
Q Consensus       513 ~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~  591 (721)
                      ...+++...++.|+++...  ...|.+.++++..   .+.+. ........+++.|...+|+++....    ....|++.
T Consensus       391 p~glAvD~~~~nLY~td~~--~~~I~v~~~~G~~---~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~----~~~~I~r~  461 (628)
T 4a0p_A          391 PYDLSIDIYSRYIYWTCEA--TNVINVTRLDGRS---VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQE----RSPKIERA  461 (628)
T ss_dssp             EEEEEEETTTTEEEEEETT--TTEEEEEETTSCE---EEEEEECTTCCEEEEEEETTTTEEEEEEEET----TEEEEEEE
T ss_pred             cceEEeeccCCeEEEEcCC--CCEEEEEECCCCe---EEEEEeCCCCceeeEEEecCCCeEEEeecCC----CCCeEEEE
Confidence            6678999999999988743  5679899987543   23332 2233457899999777888887652    22379999


Q ss_pred             ecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       592 d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      ++++...+.+... .-.....++++++++.||++.....                .|+.++++|...+.+..
T Consensus       462 ~~dG~~~~~l~~~-~l~~P~gla~D~~~~~LYw~D~~~~----------------~I~~~~~dG~~r~~~~~  516 (628)
T 4a0p_A          462 ALDGTEREVLFFS-GLSKPIALALDSRLGKLFWADSDLR----------------RIESSDLSGANRIVLED  516 (628)
T ss_dssp             ETTSCSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTT----------------EEEEEETTSCSCEEEEC
T ss_pred             eCCCCCcEEEEec-cCCCccEEEEeCCCCEEEEEeCCCC----------------EEEEEeCCCCceEEEEc
Confidence            9998776666542 2345678899999999999876553                48889998877666653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.39  E-value=2.8e-11  Score=121.84  Aligned_cols=219  Identities=9%  Similarity=0.045  Sum_probs=134.5

Q ss_pred             cccCceeecCC----CCEEEEEEecCCCCeeeEEEEECCCCceEEeec-ccCCCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971          321 HAFTPATSPGN----NKFIAVATRRPTSSYRHIELFDLVKNKFIELTR-FVSPKTHHLNPFISPDSSRVGYHKCRGGSTR  395 (721)
Q Consensus       321 ~~~~~~~sp~d----G~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~-~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~  395 (721)
                      .+..+++|| |    +++++...       ..+.+|++.+++  .+.. ..++...+...+++|||+.+........   
T Consensus       113 ~v~sla~sp-d~~~~~~~l~s~g-------~~~~v~~l~~g~--lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~---  179 (356)
T 2w18_A          113 EIRALFCSS-DDESEKQVLLKSG-------NIKAVLGLTKRR--LVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPP---  179 (356)
T ss_dssp             EEEEECC-------CCEEEEEEE-------EEEEEEEETTTE--EEEEESSSTTCEEEEEEECTTSCEEEEEEECCC---
T ss_pred             ceEEEEECC-CccccccEEEeCC-------CeEEEEecCCCc--EEEecccCCCCcEEEEEECCCCceeeeeccCCC---
Confidence            345778899 9    88877633       227788888776  3332 2445677778889999987664321111   


Q ss_pred             CCCcceeEEEeccCCCCcceecccCCCCceeCc---CCCEEEEEe-CCcEEEEECCCCce-EEEee-----cCceeeEEc
Q 004971          396 EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSP---KGDRIAFVE-FPGVYVVNSDGSNR-RQVYF-----KNAFSTVWD  465 (721)
Q Consensus       396 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Sp---DG~~la~~~-~~~l~v~d~~~g~~-~~l~~-----~~~~~~~~s  465 (721)
                                              ....++||+   |+..|+..+ ++.|.+||+++|+. +.+..     ..+...+||
T Consensus       180 ------------------------~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafS  235 (356)
T 2w18_A          180 ------------------------EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYS  235 (356)
T ss_dssp             ------------------------SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEE
T ss_pred             ------------------------ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEEC
Confidence                                    133457888   778888875 88999999999885 44431     134456899


Q ss_pred             CCCCeEEEEecCCC---C--CCCCCcEEEEEEEccCCCCccceEEcc---cCCCCCcceEEccCCCEEEEEEeeCCceeE
Q 004971          466 PVREAVVYTSGGPE---F--ASESSEVDIISINVDDVDGVSAVRRLT---TNGKNNAFPSVSPDGKWIVFRSTRTGYKNL  537 (721)
Q Consensus       466 pdg~~la~~~~~~~---~--~~~~~~~~i~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l  537 (721)
                      |||+.++..+....   .  ...+..+++|+..  ++   .....+.   ..+.....+..+.+|..++..+.   +..|
T Consensus       236 pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~--tg---k~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~---DgTI  307 (356)
T 2w18_A          236 EMGLLFIVLSHPCAKESESLRSPVFQLIVINPK--TT---LSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILT---SGTI  307 (356)
T ss_dssp             ETTEEEEEEC------------CCEEEEEEETT--TT---EEEEEEEECCCTTCCCCEEEEEEETTEEEEEET---TSCE
T ss_pred             CCCCEEEEeccCCCcceeeccCCCcEEEEEECC--CC---EEEEEEEeeccCCCcceeEccccCCCEEEEEcC---CCcE
Confidence            99999876542100   0  1245677777543  22   1222221   01111112223334666776665   6789


Q ss_pred             EEEECCCCcccceEECcCCCcCc-eeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971          538 YIMDAEGGEGYGLHRLTEGPWSD-TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       538 ~~~d~~~g~~~~~~~l~~~~~~~-~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                      ++||+.+|+.  +..+..+...+ ..++|||||++|+.++.+.       .|++||+
T Consensus       308 kIWDl~tGk~--l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~-------TIklWd~  355 (356)
T 2w18_A          308 AIWDLLLGQC--TALLPPVSDQHWSFVKWSGTDSHLLAGQKDG-------NIFVYHY  355 (356)
T ss_dssp             EEEETTTCSE--EEEECCC--CCCCEEEECSSSSEEEEECTTS-------CEEEEEE
T ss_pred             EEEECCCCcE--EEEecCCCCCeEEEEEECCCCCEEEEEECCC-------cEEEecC
Confidence            9999999985  66666554433 3589999999999988875       8999985

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.38  E-value=4.3e-10  Score=116.27  Aligned_cols=253  Identities=14%  Similarity=0.134  Sum_probs=147.7

Q ss_pred             ceeecCCCCEEEEEEec-----CCCCeeeEEEEECCCCceEEeecccC-----CCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971          325 PATSPGNNKFIAVATRR-----PTSSYRHIELFDLVKNKFIELTRFVS-----PKTHHLNPFISPDSSRVGYHKCRGGST  394 (721)
Q Consensus       325 ~~~sp~dG~~la~~~~~-----~g~~~~~l~l~dl~tg~~~~l~~~~~-----~~~~~~~~~~Spdg~~l~~~~~~~~~~  394 (721)
                      +.+|| ||++++.....     .|.....|.+||.++++...-.....     .......+++||||++|++......  
T Consensus        83 va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~--  159 (386)
T 3sjl_D           83 PVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA--  159 (386)
T ss_dssp             EEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS--
T ss_pred             EEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC--
Confidence            99999 99998876531     11234569999999987533221110     0224667899999999988765333  


Q ss_pred             CCCCcceeEEEeccCCCC--cceeccc------C-CCCceeCcCCCEEEEEeCCcEEEEECCC-CceEE----Ee---ec
Q 004971          395 REDGNNQLLLENIKSPLP--DISLFRF------D-GSFPSFSPKGDRIAFVEFPGVYVVNSDG-SNRRQ----VY---FK  457 (721)
Q Consensus       395 ~~~~~~~l~~~~~~~~~~--~~~~~~~------~-~~~~~~SpDG~~la~~~~~~l~v~d~~~-g~~~~----l~---~~  457 (721)
                           ..+.+.++.+...  .+....+      . ..+...++||+.+         ++++.. ++...    +.   ..
T Consensus       160 -----~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~---------~v~~~~~g~v~~~~~~~~~~~~~  225 (386)
T 3sjl_D          160 -----PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLA---------KVAFGTEGTPEITHTEVFHPEDE  225 (386)
T ss_dssp             -----CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEE---------EEECCSSSCCEEEECCCCSCTTS
T ss_pred             -----CeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEE---------EEECCCCCeEEEeecceeccccc
Confidence                 3577777765521  1111000      0 1122445555544         344432 22211    11   11


Q ss_pred             Cc-eeeEEc-CCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc----------C---CCCCcceEEccCC
Q 004971          458 NA-FSTVWD-PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT----------N---GKNNAFPSVSPDG  522 (721)
Q Consensus       458 ~~-~~~~~s-pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~----------~---~~~~~~~~~SpDg  522 (721)
                      .+ ..+.|. +|| +++|.+.       .+  .++.++..+.    ..+.+..          .   .......+++||+
T Consensus       226 ~~~~~~~~~~~dG-~~~~vs~-------~g--~V~v~d~~~~----~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~  291 (386)
T 3sjl_D          226 FLINHPAYSQKAG-RLVWPTY-------TG--KIHQIDLSSG----DAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL  291 (386)
T ss_dssp             CBCSCCEEETTTT-EEEEEBT-------TS--EEEEEECTTS----SCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred             cccccceeEcCCC-cEEEEeC-------CC--EEEEEECCCC----cceeecceeccccccccccccCCCcceeeECCCC
Confidence            11 235664 677 4555652       34  4566665442    2111110          0   1233457889999


Q ss_pred             CEEEEEEeeC-------CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971          523 KWIVFRSTRT-------GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       523 ~~l~~~s~~~-------g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      ++|++.....       ...+|+++|+.+++.  ++.+.-+. ....+++||||+.++|..+.     ....|.++|..+
T Consensus       292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv--~~~i~vg~-~~~~lavs~D~~~~ly~tn~-----~~~~VsViD~~t  363 (386)
T 3sjl_D          292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGER--LAKFEMGH-EIDSINVSQDEKPLLYALST-----GDKTLYIHDAES  363 (386)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCE--EEEEEEEE-EECEEEECSSSSCEEEEEET-----TTTEEEEEETTT
T ss_pred             CeEEEEeccccccccCCCCCEEEEEECCCCeE--EEEEECCC-CcceEEECCCCCeEEEEEcC-----CCCeEEEEECCC
Confidence            9999986432       246899999999886  56665433 34689999999844444433     123899999999


Q ss_pred             CceEEeeecCCCCCcCCeEECCC
Q 004971          596 TGLRKLIQSGSAGRANHPYFSPD  618 (721)
Q Consensus       596 ~~~~~l~~~~~~~~~~~~~~SpD  618 (721)
                      ++..+-..  ..+....+.+++|
T Consensus       364 ~k~~~~i~--~~~~p~~l~~s~d  384 (386)
T 3sjl_D          364 GEELRSVN--QLGHGPQVITTAD  384 (386)
T ss_dssp             CCEEEEEC--CCCSSCCEEEECC
T ss_pred             CcEEEEec--CCCCCceeEECCc
Confidence            98776554  4466677888887

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.37  E-value=2.4e-10  Score=120.44  Aligned_cols=261  Identities=11%  Similarity=0.108  Sum_probs=154.4

Q ss_pred             CceeecCCCCEEEEEEec-----CCCCeeeEEEEECCCCceEEeeccc-C----CCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971          324 TPATSPGNNKFIAVATRR-----PTSSYRHIELFDLVKNKFIELTRFV-S----PKTHHLNPFISPDSSRVGYHKCRGGS  393 (721)
Q Consensus       324 ~~~~sp~dG~~la~~~~~-----~g~~~~~l~l~dl~tg~~~~l~~~~-~----~~~~~~~~~~Spdg~~l~~~~~~~~~  393 (721)
                      .+.+|| ||++++.....     .|.....|.++|..+++...-.... .    .......+++||||++|++...... 
T Consensus       122 gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~-  199 (426)
T 3c75_H          122 HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA-  199 (426)
T ss_dssp             EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS-
T ss_pred             ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC-
Confidence            789999 99998876531     1113456999999998754322111 0    0134567899999999998765433 


Q ss_pred             CCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEE----e---ec-CceeeE
Q 004971          394 TREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQV----Y---FK-NAFSTV  463 (721)
Q Consensus       394 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l----~---~~-~~~~~~  463 (721)
                            ..+.+.|+.+... +....... .....|+|++.++.  .++.+.++++.+++....    .   .. ....+.
T Consensus       200 ------~~VsVID~~t~kv-v~~I~v~g-~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~  271 (426)
T 3c75_H          200 ------PAVGVVDLEGKTF-DRMLDVPD-CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPA  271 (426)
T ss_dssp             ------CEEEEEETTTTEE-EEEEECCS-EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCE
T ss_pred             ------CeEEEEECCCCeE-EEEEEcCC-ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEee
Confidence                  4577777765521 11111111 12334444332222  355666666655543311    1   11 112467


Q ss_pred             EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc------C-------CCCCcceEEccCCCEEEEEEe
Q 004971          464 WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT------N-------GKNNAFPSVSPDGKWIVFRST  530 (721)
Q Consensus       464 ~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~------~-------~~~~~~~~~SpDg~~l~~~s~  530 (721)
                      ++++++.+++.+.       .+  .++.++..+.    ....+..      .       ......++++|||++|++...
T Consensus       272 ~~~dg~~~~~~s~-------~g--~V~ViD~~~~----~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~  338 (426)
T 3c75_H          272 FSLRSGRLVWPTY-------TG--KIFQADLTAE----GATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVD  338 (426)
T ss_dssp             ECTTTCEEEEEBT-------TS--EEEEEEECSS----CEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEE
T ss_pred             ecCCCCEEEEEeC-------CC--cEEEEeccCC----ceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEec
Confidence            8999999999862       24  3555555432    2211110      0       112233689999999988764


Q ss_pred             eC-------CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCC-EEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971          531 RT-------GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE-WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI  602 (721)
Q Consensus       531 ~~-------g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  602 (721)
                      ..       +..+|.++|..+.+.  +..+.-+. ....++|+|||+ .|+......      ..|.++|+.+++..+..
T Consensus       339 ~~~~gthk~~s~~VsVID~~T~kv--v~~I~vg~-~P~gia~spDg~~~lyv~n~~s------~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          339 QRDEWKHKAASRFVVVLNAETGER--INKIELGH-EIDSINVSQDAEPLLYALSAGT------QTLHIYDAATGEELRSV  409 (426)
T ss_dssp             ECCTTCTTSCEEEEEEEETTTCCE--EEEEEEEE-EECEEEECCSSSCEEEEEETTT------TEEEEEETTTCCEEEEE
T ss_pred             ccccccccCCCCEEEEEECCCCeE--EEEEECCC-CcCeEEEccCCCEEEEEEcCCC------CeEEEEECCCCCEEEEe
Confidence            21       245899999999885  56665333 247899999999 666555322      38999999999876553


Q ss_pred             ecCCCCCcCCeEECCC
Q 004971          603 QSGSAGRANHPYFSPD  618 (721)
Q Consensus       603 ~~~~~~~~~~~~~SpD  618 (721)
                      .  .-+.......+||
T Consensus       410 ~--~vG~~P~~i~~~~  423 (426)
T 3c75_H          410 D--QLGRGPQIITTHD  423 (426)
T ss_dssp             C--CCSSSCCEEECCC
T ss_pred             c--CCCCCCcEEEcCC
Confidence            2  1233344666665

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.36  E-value=1.4e-07  Score=105.27  Aligned_cols=400  Identities=12%  Similarity=0.078  Sum_probs=224.3

Q ss_pred             cCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCC-CCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEE
Q 004971          175 SGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPY-GVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYI  253 (721)
Q Consensus       175 dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~-~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~  253 (721)
                      .++.|+++....         ..|+.++++|...+.|... -..-...++.|...+|+++....          ...|++
T Consensus        90 ~~~~LY~tD~~~---------~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~----------~~~I~r  150 (628)
T 4a0p_A           90 LGKNLYWADTGT---------NRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG----------KPKIDR  150 (628)
T ss_dssp             TTTEEEEEETTT---------TEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSS----------SCEEEE
T ss_pred             CCCEEEEEECCC---------CEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCC----------CCEEEE
Confidence            477788865432         2899999988776655321 11223447888767888864221          368999


Q ss_pred             EEcCCCceeEEEeccCCcc---eeccC-CeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeec
Q 004971          254 FLTRDGTQRVKIVENGGWP---CWVDE-STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSP  329 (721)
Q Consensus       254 ~d~~~g~~~~l~~~~~~~~---~ws~d-g~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  329 (721)
                      .++++...+.+.. ....|   ++.++ +++|++.  ...+  .|+.+...+..       . +.+.........+++  
T Consensus       151 ~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD--~~~~--~I~~~d~dG~~-------~-~v~~~~l~~P~glav--  215 (628)
T 4a0p_A          151 AAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTD--LDTN--LIESSNMLGLN-------R-EVIADDLPHPFGLTQ--  215 (628)
T ss_dssp             EETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEE--TTTT--EEEEEETTSCS-------C-EEEEECCSCEEEEEE--
T ss_pred             EeCCCCceEEEEC-CCCCcceEEEccccCEEEEEE--CCCC--EEEEEcCCCCc-------e-EEeeccCCCceEEEE--
Confidence            9997777666553 33333   77775 5677742  2123  45544444432       2 222222222334555  


Q ss_pred             CCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc--c------------CCC--------CcccCc------------
Q 004971          330 GNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF--V------------SPK--------THHLNP------------  375 (721)
Q Consensus       330 ~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~--~------------~~~--------~~~~~~------------  375 (721)
                       ++.+|++....    ...|+..|..+|+.+.+...  .            .+.        +.....            
T Consensus       216 -~~~~ly~tD~~----~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~  290 (628)
T 4a0p_A          216 -YQDYIYWTDWS----RRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCG  290 (628)
T ss_dssp             -ETTEEEEEETT----TTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEE
T ss_pred             -ECCEEEEecCC----CCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEE
Confidence             56788876533    23488888766653222110  0            000        000001            


Q ss_pred             -----EEcCCCC-------EEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceec-c--cCCCCceeCcCCCEEEEEe--
Q 004971          376 -----FISPDSS-------RVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLF-R--FDGSFPSFSPKGDRIAFVE--  437 (721)
Q Consensus       376 -----~~Spdg~-------~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~-~--~~~~~~~~SpDG~~la~~~--  437 (721)
                           ...+|++       .|+|+. .         ..+....+..... ..... .  .....+.|.+.+.+|+++.  
T Consensus       291 C~~g~~l~~d~~~C~~~~~~Ll~s~-~---------~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~  360 (628)
T 4a0p_A          291 CPAHYSLNADNRTCSAPTTFLLFSQ-K---------SAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSR  360 (628)
T ss_dssp             CSTTCEECTTSSCEECCSSEEEEEE-T---------TEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETT
T ss_pred             cCCCcEecccCCcCccccceeeeec-c---------ceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecC
Confidence                 1122221       111111 0         1122222221110 11110 0  1122357777777888884  


Q ss_pred             CCcEEEEECCCCceEEEe-e--------cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc
Q 004971          438 FPGVYVVNSDGSNRRQVY-F--------KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT  508 (721)
Q Consensus       438 ~~~l~v~d~~~g~~~~l~-~--------~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~  508 (721)
                      ...|+.+++++.....+. .        ..+..+++.+.++.|+++..      ...  .|...+.++.    ..+.+..
T Consensus       361 ~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~------~~~--~I~v~~~~G~----~~~~l~~  428 (628)
T 4a0p_A          361 QNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCE------ATN--VINVTRLDGR----SVGVVLK  428 (628)
T ss_dssp             TTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEET------TTT--EEEEEETTSC----EEEEEEE
T ss_pred             cceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcC------CCC--EEEEEECCCC----eEEEEEe
Confidence            567999998876644443 2        24568899999999999852      223  4555555553    3334433


Q ss_pred             C-CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCce
Q 004971          509 N-GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF  586 (721)
Q Consensus       509 ~-~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~  586 (721)
                      . ......+++.|...+|+++.......+|++.++++..   ...+. ..-.....++++++++.|+++....      .
T Consensus       429 ~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~---~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~------~  499 (628)
T 4a0p_A          429 GEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTE---REVLFFSGLSKPIALALDSRLGKLFWADSDL------R  499 (628)
T ss_dssp             CTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEETTT------T
T ss_pred             CCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCC---cEEEEeccCCCccEEEEeCCCCEEEEEeCCC------C
Confidence            2 3567788999977788888754322389999998665   33333 2333457899999999999998753      3


Q ss_pred             eEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC-eEEecc
Q 004971          587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD-LKRLTQ  663 (721)
Q Consensus       587 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~lt~  663 (721)
                      .|+.+++++...+.+... .......++.  ++.+|+++.....                .|+++|..+|+ .+.|..
T Consensus       500 ~I~~~~~dG~~r~~~~~~-~~~~P~glav--~~~~ly~tD~~~~----------------~i~~~~k~~G~~~~~i~~  558 (628)
T 4a0p_A          500 RIESSDLSGANRIVLEDS-NILQPVGLTV--FENWLYWIDKQQQ----------------MIEKIDMTGREGRTKVQA  558 (628)
T ss_dssp             EEEEEETTSCSCEEEECS-SCSCEEEEEE--ETTEEEEEETTTT----------------EEEEEETTSSSCCEEEEC
T ss_pred             EEEEEeCCCCceEEEEcC-CCCCcEEEEE--ECCEEEEEECCCC----------------eEEEEECcCCCCcEEEec
Confidence            899999988766655432 1222334444  4568888776543                49999987554 455543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.33  E-value=5.5e-10  Score=113.31  Aligned_cols=244  Identities=12%  Similarity=0.076  Sum_probs=152.6

Q ss_pred             ceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEee
Q 004971          311 SIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCR  390 (721)
Q Consensus       311 ~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~  390 (721)
                      +.+.+.........++|+| +|+.|++....    ...|++||.+++ ...+..   +......++++|||+.++. . .
T Consensus        19 ~~~~l~~~~~~~eg~~~d~-~g~~l~~~~~~----~~~i~~~~~~~~-~~~~~~---~~~~~~~l~~~~dg~l~v~-~-~   87 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVP-ARSAVIFSDVR----QNRTWAWSDDGQ-LSPEMH---PSHHQNGHCLNKQGHLIAC-S-H   87 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEG-GGTEEEEEEGG----GTEEEEEETTSC-EEEEES---SCSSEEEEEECTTCCEEEE-E-T
T ss_pred             cEEEEecCCccccCCeEeC-CCCEEEEEeCC----CCEEEEEECCCC-eEEEEC---CCCCcceeeECCCCcEEEE-e-c
Confidence            3444444444556899999 99977776543    335999999887 444432   3445667899999985433 2 2


Q ss_pred             CCCCCCCCcceeEEEeccCCCCc-ceec-----ccCCCCceeCcCCCEEEEEe------------------CCcEEEEEC
Q 004971          391 GGSTREDGNNQLLLENIKSPLPD-ISLF-----RFDGSFPSFSPKGDRIAFVE------------------FPGVYVVNS  446 (721)
Q Consensus       391 ~~~~~~~~~~~l~~~~~~~~~~~-~~~~-----~~~~~~~~~SpDG~~la~~~------------------~~~l~v~d~  446 (721)
                      ..       ..+++.+..++... +...     ......++++|||+.++...                  ...|+.++.
T Consensus        88 ~~-------~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~  160 (296)
T 3e5z_A           88 GL-------RRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP  160 (296)
T ss_dssp             TT-------TEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred             CC-------CeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence            22       24666665433211 1100     01234578999997544311                  347888888


Q ss_pred             CCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc-cceEEcccCCCCCcceEEccCCC
Q 004971          447 DGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV-SAVRRLTTNGKNNAFPSVSPDGK  523 (721)
Q Consensus       447 ~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~SpDg~  523 (721)
                      + ++...+.  ......++|+|||+.+ ++..      ....+.+|.++..+.  . ...+.+.........+++++||+
T Consensus       161 ~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~------~~~~i~~~~~~~~g~--~~~~~~~~~~~~~~p~~i~~d~~G~  230 (296)
T 3e5z_A          161 D-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDT------GDNATHRYCLNARGE--TEYQGVHFTVEPGKTDGLRVDAGGL  230 (296)
T ss_dssp             T-SCEEEEECCCSSEEEEEECTTSCEE-EEET------TTTEEEEEEECSSSC--EEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred             C-CCEEEeecCCCCCccEEECCCCCEE-EEeC------CCCeEEEEEECCCCc--CcCCCeEeeCCCCCCCeEEECCCCC
Confidence            7 5555554  3345689999999999 6542      345666666653221  0 01223322234566789999998


Q ss_pred             EEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEE-ccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971          524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNW-SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR  599 (721)
Q Consensus       524 ~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~-SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~  599 (721)
                       |+++.    ...|++|+.+ |+.  +..+..... +..++| +||++.|+++..+        .|++++..+++.+
T Consensus       231 -l~v~~----~~~v~~~~~~-g~~--~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~--------~l~~~~~~~~~~~  290 (296)
T 3e5z_A          231 -IWASA----GDGVHVLTPD-GDE--LGRVLTPQT-TSNLCFGGPEGRTLYMTVST--------EFWSIETNVRGLE  290 (296)
T ss_dssp             -EEEEE----TTEEEEECTT-SCE--EEEEECSSC-CCEEEEESTTSCEEEEEETT--------EEEEEECSCCBCC
T ss_pred             -EEEEc----CCeEEEECCC-CCE--EEEEECCCC-ceeEEEECCCCCEEEEEcCC--------eEEEEEccccccc
Confidence             44444    4579999997 443  455544444 678899 6999999988875        7999999887654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.33  E-value=2.4e-10  Score=118.14  Aligned_cols=248  Identities=12%  Similarity=0.069  Sum_probs=150.1

Q ss_pred             CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc-ce-ecccCCCCceeCcCCCEEEEEeC-----CcE
Q 004971          369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD-IS-LFRFDGSFPSFSPKGDRIAFVEF-----PGV  441 (721)
Q Consensus       369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~~~~~~SpDG~~la~~~~-----~~l  441 (721)
                      ......++|+|+|+ |++.....        ..++.++..++... +. ........++++|||+.++....     ..|
T Consensus        44 ~~~~~~~~~~~~g~-l~~~~~~~--------~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i  114 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQ-LFLLDVFE--------GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGI  114 (333)
T ss_dssp             CCCEEEEEECTTSC-EEEEETTT--------CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred             CccccCcEECCCCC-EEEEECCC--------CEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence            33456789999998 55433222        34777776554221 11 11122345789999976555433     489


Q ss_pred             EEEECCCCceEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcce
Q 004971          442 YVVNSDGSNRRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFP  516 (721)
Q Consensus       442 ~v~d~~~g~~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~  516 (721)
                      +++|.+++....+.     ...+..+.++|+|+.++....+.   ..+....||.++.++.    ....+.........+
T Consensus       115 ~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~---~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~i  187 (333)
T 2dg1_A          115 FAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY---STNPLGGVYYVSPDFR----TVTPIIQNISVANGI  187 (333)
T ss_dssp             EEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB---TTBCCEEEEEECTTSC----CEEEEEEEESSEEEE
T ss_pred             EEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccc---ccCCCceEEEEeCCCC----EEEEeecCCCcccce
Confidence            99999988876443     22456789999997554432110   1123568888887653    444443332345678


Q ss_pred             EEccCCCEEEEEEeeCCceeEEEEECCC-Ccc-cce-----EECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEE
Q 004971          517 SVSPDGKWIVFRSTRTGYKNLYIMDAEG-GEG-YGL-----HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY  589 (721)
Q Consensus       517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~-g~~-~~~-----~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~  589 (721)
                      +|+|||++|++....  ...|++||+++ +.. ...     ..+.. ......+++++||+.++......       .|+
T Consensus       188 ~~~~dg~~l~v~~~~--~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~-------~v~  257 (333)
T 2dg1_A          188 ALSTDEKVLWVTETT--ANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQG-------RVL  257 (333)
T ss_dssp             EECTTSSEEEEEEGG--GTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTT-------EEE
T ss_pred             EECCCCCEEEEEeCC--CCeEEEEEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCC-------EEE
Confidence            999999988887643  45799999863 331 100     01111 12346789999998444443332       799


Q ss_pred             EEecCCCceEEeeecCCCC------CcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971          590 LIHPNGTGLRKLIQSGSAG------RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       590 ~~d~~~~~~~~l~~~~~~~------~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                      +||.++.....+..  ...      ....++|+|||+.|++++.....+           ....||.+++..
T Consensus       258 ~~d~~g~~~~~~~~--~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~-----------~~~~l~~~~~~~  316 (333)
T 2dg1_A          258 VFNKRGYPIGQILI--PGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMG-----------GGSMLYTVNGFA  316 (333)
T ss_dssp             EECTTSCEEEEEEC--TTGGGTCSCBCCEEEECTTSCEEEEEEECGGGT-----------CCEEEEEEECSS
T ss_pred             EECCCCCEEEEEEc--CCCccccccCcceEEECCCCCEEEEEeCccCCC-----------CCceEEEEeccc
Confidence            99986544444432  221      467899999999998877764210           023588888654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.30  E-value=7.5e-10  Score=114.16  Aligned_cols=272  Identities=9%  Similarity=0.018  Sum_probs=162.3

Q ss_pred             CCeeeEEEEECCCCceEEeeccc----CCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee-cc
Q 004971          344 SSYRHIELFDLVKNKFIELTRFV----SPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL-FR  418 (721)
Q Consensus       344 ~~~~~l~l~dl~tg~~~~l~~~~----~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~  418 (721)
                      ..+..|.++|.++++...-....    ........+.+  ++++++.+....        ..+.+.+..+....-+. ..
T Consensus        14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~--~~~~lyv~~~~~--------~~v~viD~~t~~~~~~i~~~   83 (328)
T 3dsm_A           14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVI--RDGIGWIVVNNS--------HVIFAIDINTFKEVGRITGF   83 (328)
T ss_dssp             SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEE--ETTEEEEEEGGG--------TEEEEEETTTCCEEEEEECC
T ss_pred             CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEE--ECCEEEEEEcCC--------CEEEEEECcccEEEEEcCCC
Confidence            44677999999998754321100    00111223444  467777765533        34677776654221111 12


Q ss_pred             cCCCCceeCcCCCEEEEEe--CCcEEEEECCCCceE-EEe-ec------CceeeEEcCCCCeEEEEecCCCCCCCCCcEE
Q 004971          419 FDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRR-QVY-FK------NAFSTVWDPVREAVVYTSGGPEFASESSEVD  488 (721)
Q Consensus       419 ~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~-~l~-~~------~~~~~~~spdg~~la~~~~~~~~~~~~~~~~  488 (721)
                      .....+++++|| ++++..  .+.|+++|+.+++.. .+. ..      ....+++  ++++|+++..+     .++  .
T Consensus        84 ~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~-----~~~--~  153 (328)
T 3dsm_A           84 TSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWS-----YQN--R  153 (328)
T ss_dssp             SSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECT-----TCC--E
T ss_pred             CCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCC-----CCC--E
Confidence            234557888998 666665  688999999988754 344 22      4556777  67788777521     133  4


Q ss_pred             EEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC-C-------ceeEEEEECCCCcccceEECcCC-CcC
Q 004971          489 IISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT-G-------YKNLYIMDAEGGEGYGLHRLTEG-PWS  559 (721)
Q Consensus       489 i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~-g-------~~~l~~~d~~~g~~~~~~~l~~~-~~~  559 (721)
                      |+.++..+.   .....+.. ......++++|||+ +++..... .       ...|+++|.++++.  ...+... ...
T Consensus       154 v~viD~~t~---~~~~~i~~-g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v--~~~~~~~~g~~  226 (328)
T 3dsm_A          154 ILKIDTETD---KVVDELTI-GIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTV--EKQFKFKLGDW  226 (328)
T ss_dssp             EEEEETTTT---EEEEEEEC-SSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEE--EEEEECCTTCC
T ss_pred             EEEEECCCC---eEEEEEEc-CCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeE--EEEEecCCCCC
Confidence            555665543   12333433 33556789999998 45454321 0       25899999998874  3333321 124


Q ss_pred             ceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC-CCCcCCeEECCCCCEEEEEEecCCCcCCCCCC
Q 004971          560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS-AGRANHPYFSPDGKSIVFTSDYGGISAEPIST  638 (721)
Q Consensus       560 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~  638 (721)
                      ...++|+|||+.|+++..         .|+++|+++++......... ......++++|++..|+++...+         
T Consensus       227 p~~la~~~d~~~lyv~~~---------~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~---------  288 (328)
T 3dsm_A          227 PSEVQLNGTRDTLYWINN---------DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAID---------  288 (328)
T ss_dssp             CEEEEECTTSCEEEEESS---------SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTT---------
T ss_pred             ceeEEEecCCCEEEEEcc---------EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccc---------
Confidence            578999999998887643         59999998887532111101 24566789999877777765211         


Q ss_pred             CCCCCCCccEEEEEcCCCCeEEecc
Q 004971          639 PHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       639 ~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                         |.....|++||.+++..+.+.-
T Consensus       289 ---y~~~~~V~v~d~~g~~~~~i~~  310 (328)
T 3dsm_A          289 ---YQQQGIVYRYSPQGKLIDEFYV  310 (328)
T ss_dssp             ---SSSEEEEEEECTTCCEEEEEEE
T ss_pred             ---cccCCEEEEECCCCCEEEEEEe
Confidence               0012369999999555566653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.30  E-value=2e-10  Score=119.06  Aligned_cols=285  Identities=7%  Similarity=-0.077  Sum_probs=159.6

Q ss_pred             eEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCC--CCCCCcceeEEEeccCCCC--cceec------
Q 004971          348 HIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS--TREDGNNQLLLENIKSPLP--DISLF------  417 (721)
Q Consensus       348 ~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~--~~~~~~~~l~~~~~~~~~~--~~~~~------  417 (721)
                      .+.++|.++++...-...   +... ++++||||++++++......  .+.. ...+.++|+.+...  .+...      
T Consensus        47 ~vsvID~~t~~v~~~i~v---G~~P-~i~~spDg~~lyVan~~~~r~~~G~~-~~~VsviD~~T~~vv~~I~v~~~~~~~  121 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLG---AFLS-LAVAGHSGSDFALASTSFARSAKGKR-TDYVEVFDPVTFLPIADIELPDAPRFS  121 (368)
T ss_dssp             EEEEEETTTTEEEEEEEE---CTTC-EEEECTTSSCEEEEEEEETTTTSSSE-EEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred             eEEEEECCCCeEEEEEeC---CCCC-ceEECCCCCEEEEEcccccccccCCC-CCEEEEEECCCCCEEEEEECCCccccc
Confidence            799999999875432221   1223 69999999999987642110  0000 14577777765532  11111      


Q ss_pred             -ccCCCCceeCcCCCEEEEEe---CCcEEE--EECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEE
Q 004971          418 -RFDGSFPSFSPKGDRIAFVE---FPGVYV--VNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS  491 (721)
Q Consensus       418 -~~~~~~~~~SpDG~~la~~~---~~~l~v--~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~  491 (721)
                       ......+++||||+++++..   ...+.+  +|+.+  ...+..+..  +...|+|+..++..      ..++++.+.+
T Consensus       122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~~~--~~~~p~g~~~~~~~------~~dg~~~~vd  191 (368)
T 1mda_H          122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSASC--FHIHPGAAATHYLG------SCPASLAASD  191 (368)
T ss_dssp             BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSSC--CCCEEEETTEEECC------CCTTSCEEEE
T ss_pred             cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECCCc--eEEccCCCeEEEEE------cCCCCEEEEE
Confidence             02356789999999998884   346777  78766  444442222  23456666665543      1234443333


Q ss_pred             EEccC--CCCccceEE-cccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC----------Cc
Q 004971          492 INVDD--VDGVSAVRR-LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG----------PW  558 (721)
Q Consensus       492 ~~~~~--~~~~~~~~~-l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~----------~~  558 (721)
                      ++...  .   ++... .+..-.....|..+++++.+++.+.    ..++.+|..++..+.+..+...          +.
T Consensus       192 ~~~~~~~~---~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~----~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~  264 (368)
T 1mda_H          192 LAAAPAAA---GIVGAQCTGAQNCSSQAAQANYPGMLVWAVA----SSILQGDIPAAGATMKAAIDGNESGRKADNFRSA  264 (368)
T ss_dssp             CCSSCCCC---EECCCCSCTTSCBCSCCEEETTTTEEEECBS----SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC
T ss_pred             CccccccC---CeEEEEeeeeeeCCCCccccccCCEEEEEcC----CEEEEEECCCCcceEEEEEEeccccccccccccC
Confidence            22200  0   01100 0000000011213888898888885    5799999976542212222111          01


Q ss_pred             CceeeEEccCCCEEEEEEc-c-CCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEe-cCCCcCCC
Q 004971          559 SDTMCNWSPDGEWIAFASD-R-DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD-YGGISAEP  635 (721)
Q Consensus       559 ~~~~~~~SpDG~~l~~~~~-~-~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~-~~~~~~~~  635 (721)
                      ....++++|||++|++... . .........+.++|+++++...-...  ......++|+|||++++++.. ..+     
T Consensus       265 g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v--g~~p~gi~~s~Dg~~l~va~~~~~~-----  337 (368)
T 1mda_H          265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN--GHDSDAIIAAQDGASDNYANSAGTE-----  337 (368)
T ss_dssp             SSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE--EEEECEEEECCSSSCEEEEEETTTT-----
T ss_pred             cceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC--CCCcceEEECCCCCEEEEEccCCCC-----
Confidence            1122689999999998754 1 00000012566999999876654432  235788999999998888777 343     


Q ss_pred             CCCCCCCCCCccEEEEEcCCCCeE-EeccCCCCCCCcee
Q 004971          636 ISTPHQYQPYGEIFKIKLDGSDLK-RLTQNSFEDGTPAW  673 (721)
Q Consensus       636 ~~~~~~~~~~~~l~~~d~~~~~~~-~lt~~~~~~~~~~~  673 (721)
                                 .|.++|+++.++. +|.- +......++
T Consensus       338 -----------~VsVID~~t~kvv~~I~v-g~~P~~i~~  364 (368)
T 1mda_H          338 -----------VLDIYDAASDQDQSSVEL-DKGPESLSV  364 (368)
T ss_dssp             -----------EEEEEESSSCEEEEECCC-CSCCCEEEC
T ss_pred             -----------eEEEEECCCCcEEEEEEC-CCCCCEEEe
Confidence                       5999999998765 4443 333333443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.27  E-value=5.4e-10  Score=113.98  Aligned_cols=232  Identities=10%  Similarity=0.036  Sum_probs=142.3

Q ss_pred             CcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCC
Q 004971          370 THHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDG  448 (721)
Q Consensus       370 ~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~  448 (721)
                      ....++.|+|+|+.|++....+        ..++.++..+....+.........+++++||+.++... ...|++++.+ 
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~--------~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-  115 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVG--------RRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-  115 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTT--------TEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             cCccCCeEeCCCCEEEEEECCC--------CEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence            3455799999999888865433        34666665333222222222234578999998544442 4689999987 


Q ss_pred             CceEEEe-e------cCceeeEEcCCCCeEEEEec--C-------CCCCCCCCcEEEEEEEccCCCCccceEEcccCCCC
Q 004971          449 SNRRQVY-F------KNAFSTVWDPVREAVVYTSG--G-------PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKN  512 (721)
Q Consensus       449 g~~~~l~-~------~~~~~~~~spdg~~la~~~~--~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~  512 (721)
                      ++.+.+. .      ..+..+.++|||+ ++++..  +       ...........||.++.+++    ....+. ....
T Consensus       116 g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g----~~~~~~-~~~~  189 (305)
T 3dr2_A          116 GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS----PLQRMA-DLDH  189 (305)
T ss_dssp             SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC----CCEEEE-EESS
T ss_pred             CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCC----cEEEEe-cCCC
Confidence            5555554 1      2356799999997 444310  0       00011123468899987543    444444 3235


Q ss_pred             CcceEEccCCCEEEEEEeeC---CceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeE
Q 004971          513 NAFPSVSPDGKWIVFRSTRT---GYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM  588 (721)
Q Consensus       513 ~~~~~~SpDg~~l~~~s~~~---g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i  588 (721)
                      ...++|+|||+.|++.....   +...|++++++++.......+. ........++++++|+ |+++...        .|
T Consensus       190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~--------gv  260 (305)
T 3dr2_A          190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT--------GV  260 (305)
T ss_dssp             EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS--------EE
T ss_pred             CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC--------cE
Confidence            56789999999998886531   1268999998754321111111 1223345789999999 5544432        59


Q ss_pred             EEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEec
Q 004971          589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY  628 (721)
Q Consensus       589 ~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~  628 (721)
                      ++|+.++.....+..   ......++|+||++.|++++..
T Consensus       261 ~~~~~~g~~~~~~~~---~~~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          261 CVFDSDGQLLGHIPT---PGTASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             EEECTTSCEEEEEEC---SSCCCEEEECTTSCEEEEEETT
T ss_pred             EEECCCCCEEEEEEC---CCceeEEEEeCCCCEEEEEcCC
Confidence            999997654444432   2357889999999999887764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.27  E-value=8.5e-10  Score=113.65  Aligned_cols=229  Identities=14%  Similarity=0.096  Sum_probs=144.8

Q ss_pred             cCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceE
Q 004971          373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRR  452 (721)
Q Consensus       373 ~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~  452 (721)
                      .++.|+|+++.+++....+        ..++.++..++.............++|++||+.++. ....|+++|.++++.+
T Consensus        52 egp~~~~~~~~l~~~d~~~--------~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~-~~~gl~~~d~~~g~~~  122 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILE--------RELHELHLASGRKTVHALPFMGSALAKISDSKQLIA-SDDGLFLRDTATGVLT  122 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGG--------TEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEE-ETTEEEEEETTTCCEE
T ss_pred             cCCeEeCCCCEEEEEECCC--------CEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEE-ECCCEEEEECCCCcEE
Confidence            4689999988888875443        357777766542221122223445688999975554 4667999999988876


Q ss_pred             EEee-------cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEE
Q 004971          453 QVYF-------KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWI  525 (721)
Q Consensus       453 ~l~~-------~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l  525 (721)
                      .+..       ..+..+.++|+|+. +++.....  .......||.++ ++     ....+.........++|+|||+.|
T Consensus       123 ~~~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~~~--~~~~~~~l~~~~-~g-----~~~~~~~~~~~~~~i~~s~dg~~l  193 (326)
T 2ghs_A          123 LHAELESDLPGNRSNDGRMHPSGAL-WIGTMGRK--AETGAGSIYHVA-KG-----KVTKLFADISIPNSICFSPDGTTG  193 (326)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTSCE-EEEEEETT--CCTTCEEEEEEE-TT-----EEEEEEEEESSEEEEEECTTSCEE
T ss_pred             EEeeCCCCCCCCCCCCEEECCCCCE-EEEeCCCc--CCCCceEEEEEe-CC-----cEEEeeCCCcccCCeEEcCCCCEE
Confidence            6651       13457899999984 44432110  123456788888 43     444443332345678999999999


Q ss_pred             EEEEeeCCceeEEEEECC--CC-ccc---ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971          526 VFRSTRTGYKNLYIMDAE--GG-EGY---GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR  599 (721)
Q Consensus       526 ~~~s~~~g~~~l~~~d~~--~g-~~~---~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~  599 (721)
                      ++....  ...|++++.+  +| +..   ....+.........++++++|+..+......       .|++|+.++....
T Consensus       194 yv~~~~--~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~-------~v~~~d~~g~~~~  264 (326)
T 2ghs_A          194 YFVDTK--VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG-------AVDRYDTDGNHIA  264 (326)
T ss_dssp             EEEETT--TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT-------EEEEECTTCCEEE
T ss_pred             EEEECC--CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCC-------EEEEECCCCCEEE
Confidence            887643  4689999986  56 421   1222222233346789999997443333222       7999998544333


Q ss_pred             EeeecCCCCCcCCeEEC-CCCCEEEEEEecCC
Q 004971          600 KLIQSGSAGRANHPYFS-PDGKSIVFTSDYGG  630 (721)
Q Consensus       600 ~l~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~  630 (721)
                      .+..  ....+..++|+ ||++.|++++...+
T Consensus       265 ~i~~--~~~~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          265 RYEV--PGKQTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             EEEC--SCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             EEEC--CCCCcEEEEEecCCCCEEEEEecCCC
Confidence            3332  33457789998 99999988877664

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.23  E-value=2.8e-09  Score=110.02  Aligned_cols=245  Identities=11%  Similarity=0.013  Sum_probs=146.7

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      ....++|+| +|+ |++....    ...|++||+++++.+.+..  .....+..++++|||+.++.. .....    ...
T Consensus        46 ~~~~~~~~~-~g~-l~~~~~~----~~~i~~~d~~~~~~~~~~~--~~~~~~~~i~~~~dg~l~v~~-~~~~~----~~~  112 (333)
T 2dg1_A           46 QLEGLNFDR-QGQ-LFLLDVF----EGNIFKINPETKEIKRPFV--SHKANPAAIKIHKDGRLFVCY-LGDFK----STG  112 (333)
T ss_dssp             CEEEEEECT-TSC-EEEEETT----TCEEEEECTTTCCEEEEEE--CSSSSEEEEEECTTSCEEEEE-CTTSS----SCC
T ss_pred             cccCcEECC-CCC-EEEEECC----CCEEEEEeCCCCcEEEEee--CCCCCcceEEECCCCcEEEEe-CCCCC----CCc
Confidence            446788999 998 5554322    3459999999887655432  224456788999999755443 22200    002


Q ss_pred             eeEEEeccCCCCc-cee---cccCCCCceeCcCCCEEEEEe-------CCcEEEEECCCCceEEEe--ecCceeeEEcCC
Q 004971          401 QLLLENIKSPLPD-ISL---FRFDGSFPSFSPKGDRIAFVE-------FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPV  467 (721)
Q Consensus       401 ~l~~~~~~~~~~~-~~~---~~~~~~~~~~SpDG~~la~~~-------~~~l~v~d~~~g~~~~l~--~~~~~~~~~spd  467 (721)
                      .++..+..+.... +..   .......+.++|||+.++...       ...|+.++.++++...+.  ...+..++|+||
T Consensus       113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~d  192 (333)
T 2dg1_A          113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTD  192 (333)
T ss_dssp             EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTT
T ss_pred             eEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCC
Confidence            4677776554322 111   011123468899997544433       257899998887766654  335678999999


Q ss_pred             CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE-----cccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEE
Q 004971          468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR-----LTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIM  540 (721)
Q Consensus       468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~  540 (721)
                      |+.|+++..      ..+.+.+|+++.++.    ....     .....  .....+++++||+.++....   ...|++|
T Consensus       193 g~~l~v~~~------~~~~i~~~d~~~~g~----~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~---~~~v~~~  259 (333)
T 2dg1_A          193 EKVLWVTET------TANRLHRIALEDDGV----TIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG---QGRVLVF  259 (333)
T ss_dssp             SSEEEEEEG------GGTEEEEEEECTTSS----SEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET---TTEEEEE
T ss_pred             CCEEEEEeC------CCCeEEEEEecCCCc----CcccccceEEEecCCCCCCCceEECCCCCEEEEEcC---CCEEEEE
Confidence            999888752      234566665543322    1111     11111  24556899999984443332   4579999


Q ss_pred             ECCCCcccceEECcCCCc------CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971          541 DAEGGEGYGLHRLTEGPW------SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       541 d~~~g~~~~~~~l~~~~~------~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      |.++..   +..+.....      ....++|+|||+.|+++...... .....||.+++..
T Consensus       260 d~~g~~---~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~-~~~~~l~~~~~~~  316 (333)
T 2dg1_A          260 NKRGYP---IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEM-GGGSMLYTVNGFA  316 (333)
T ss_dssp             CTTSCE---EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGG-TCCEEEEEEECSS
T ss_pred             CCCCCE---EEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCC-CCCceEEEEeccc
Confidence            986433   444433221      35789999999999887765210 1235788887654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.22  E-value=6.2e-10  Score=115.35  Aligned_cols=255  Identities=9%  Similarity=0.001  Sum_probs=147.4

Q ss_pred             CceeecCCCCEEEEEEec-----CCCCeeeEEEEECCCCceEEeeccc-CC----CCcccCcEEcCCCCEEEEEEeeCCC
Q 004971          324 TPATSPGNNKFIAVATRR-----PTSSYRHIELFDLVKNKFIELTRFV-SP----KTHHLNPFISPDSSRVGYHKCRGGS  393 (721)
Q Consensus       324 ~~~~sp~dG~~la~~~~~-----~g~~~~~l~l~dl~tg~~~~l~~~~-~~----~~~~~~~~~Spdg~~l~~~~~~~~~  393 (721)
                      .+.+|| ||++++.....     .|..+..|.++|+.+++...-.... ..    ......+++||||++++.+..... 
T Consensus        69 ~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~-  146 (368)
T 1mda_H           69 LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS-  146 (368)
T ss_dssp             EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS-
T ss_pred             ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC-
Confidence            699999 99998876531     1234567999999998854322111 00    134568999999999998765433 


Q ss_pred             CCCCCcceeEE--EeccCCCCcceecccCCCCceeCcCCCEEEEE--eCCcEEEEECCC-----CceEE-----Ee-ecC
Q 004971          394 TREDGNNQLLL--ENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDG-----SNRRQ-----VY-FKN  458 (721)
Q Consensus       394 ~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~-----g~~~~-----l~-~~~  458 (721)
                            ..+.+  .|..+ ...+   +.... ..+.|+|++.++.  .++.+.+++++.     ++...     +. ...
T Consensus       147 ------~~v~V~~iD~~t-v~~i---~v~~~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~  215 (368)
T 1mda_H          147 ------AAAGLSVPGASD-DQLT---KSASC-FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQ  215 (368)
T ss_dssp             ------CEEEEEETTTEE-EEEE---ECSSC-CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSC
T ss_pred             ------CeEEEEEEchhh-ceEE---ECCCc-eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCC
Confidence                  23444  44433 1111   11111 2345666555443  355666677765     32210     11 111


Q ss_pred             ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-------CC---CCCcceEEccCCCEEEEE
Q 004971          459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-------NG---KNNAFPSVSPDGKWIVFR  528 (721)
Q Consensus       459 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-------~~---~~~~~~~~SpDg~~l~~~  528 (721)
                      ..  . ++++..+++++       . +.+  +.++..+.. ......+..       ..   ......+++|||+++++.
T Consensus       216 P~--~-~~~~~~~~~vs-------~-~~V--~viD~~~~~-~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~  281 (368)
T 1mda_H          216 AA--Q-ANYPGMLVWAV-------A-SSI--LQGDIPAAG-ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL  281 (368)
T ss_dssp             CE--E-ETTTTEEEECB-------S-SCC--EEEECCSSC-CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             cc--c-cccCCEEEEEc-------C-CEE--EEEECCCCc-ceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence            11  3 88888888876       2 344  444443210 000111111       11   111226899999999987


Q ss_pred             EeeC-C-----ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc-cCCCCCCceeEEEEecCCCceEEe
Q 004971          529 STRT-G-----YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD-RDNPGSGSFEMYLIHPNGTGLRKL  601 (721)
Q Consensus       529 s~~~-g-----~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~-~~~~~~~~~~i~~~d~~~~~~~~l  601 (721)
                      .... +     ...+.++|+++++.  +..+.-+. ....++|+|||++++++.. ..      ..|.++|+.+++..+.
T Consensus       282 ~~~~~~~~~~~~~~~~ViD~~t~~v--v~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~------~~VsVID~~t~kvv~~  352 (368)
T 1mda_H          282 TVEHSRSCLAAAENTSSVTASVGQT--SGPISNGH-DSDAIIAAQDGASDNYANSAGT------EVLDIYDAASDQDQSS  352 (368)
T ss_dssp             EEECSSCTTSCEEEEEEEESSSCCE--EECCEEEE-EECEEEECCSSSCEEEEEETTT------TEEEEEESSSCEEEEE
T ss_pred             eccccCcccccCCCEEEEECCCCeE--EEEEECCC-CcceEEECCCCCEEEEEccCCC------CeEEEEECCCCcEEEE
Confidence            6523 2     23456999999875  66665443 3478999999998888776 22      3899999999887665


Q ss_pred             eecCCCCCcCCeEEC
Q 004971          602 IQSGSAGRANHPYFS  616 (721)
Q Consensus       602 ~~~~~~~~~~~~~~S  616 (721)
                      ..  .......+++.
T Consensus       353 I~--vg~~P~~i~~~  365 (368)
T 1mda_H          353 VE--LDKGPESLSVQ  365 (368)
T ss_dssp             CC--CCSCCCEEECC
T ss_pred             EE--CCCCCCEEEee
Confidence            54  23344445444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.18  E-value=1.8e-08  Score=104.69  Aligned_cols=275  Identities=11%  Similarity=0.020  Sum_probs=151.6

Q ss_pred             CCCEEEEEEecC---CCCeeeEEEEECCC-----CceEEeecccCCCCcccCcEE-----------c--CCCCEEEEEEe
Q 004971          331 NNKFIAVATRRP---TSSYRHIELFDLVK-----NKFIELTRFVSPKTHHLNPFI-----------S--PDSSRVGYHKC  389 (721)
Q Consensus       331 dG~~la~~~~~~---g~~~~~l~l~dl~t-----g~~~~l~~~~~~~~~~~~~~~-----------S--pdg~~l~~~~~  389 (721)
                      ..+.+++..-..   +.....|.+.|++.     ++..............-+..|           +  +++++|+....
T Consensus        24 ~e~~~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l  103 (462)
T 2ece_A           24 PEDLAYVACLYTGTGINRADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGL  103 (462)
T ss_dssp             CCSEEEEEEECTTTTCCCCCEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBT
T ss_pred             cceEEEEEeeccCCCCCCCCeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccC
Confidence            455444443332   23345688888886     443222211111212233445           7  88988887544


Q ss_pred             eCCCCCCCCcceeEEEeccCCCCcceeccc-------------CCCCceeCcCCCEEEEE--eC------CcEEEEECCC
Q 004971          390 RGGSTREDGNNQLLLENIKSPLPDISLFRF-------------DGSFPSFSPKGDRIAFV--EF------PGVYVVNSDG  448 (721)
Q Consensus       390 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~SpDG~~la~~--~~------~~l~v~d~~~  448 (721)
                      ..        .+|++.+..+..........             ....+..+|||  |++.  ++      +.|.++|.++
T Consensus       104 ~s--------~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T  173 (462)
T 2ece_A          104 RS--------SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYS  173 (462)
T ss_dssp             TT--------CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTT
T ss_pred             CC--------CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCC
Confidence            33        46888887543222222110             11234678999  3333  22      6899999998


Q ss_pred             CceE-EEe-e----cCceeeEEcCCCCeEEEEecC------CCCC------CCCCcEEEEEEEccCCCCccceEEcccCC
Q 004971          449 SNRR-QVY-F----KNAFSTVWDPVREAVVYTSGG------PEFA------SESSEVDIISINVDDVDGVSAVRRLTTNG  510 (721)
Q Consensus       449 g~~~-~l~-~----~~~~~~~~spdg~~la~~~~~------~~~~------~~~~~~~i~~~~~~~~~~~~~~~~l~~~~  510 (721)
                      .+.. .+. .    .....+.|+|+++.++...-+      ..+.      ....++.+|+++..     .....+....
T Consensus       174 ~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-----k~~~tI~vg~  248 (462)
T 2ece_A          174 FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-----KRIHSLTLGE  248 (462)
T ss_dssp             CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-----EEEEEEESCT
T ss_pred             CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-----cEeeEEecCC
Confidence            8754 333 1    223458889999966665311      0011      12466777766532     1334444431


Q ss_pred             --CCCcce--EEccCCCEEEEEEe---eCCceeEEEEECCCCcccceEEC--cCC----------------CcCceeeEE
Q 004971          511 --KNNAFP--SVSPDGKWIVFRST---RTGYKNLYIMDAEGGEGYGLHRL--TEG----------------PWSDTMCNW  565 (721)
Q Consensus       511 --~~~~~~--~~SpDg~~l~~~s~---~~g~~~l~~~d~~~g~~~~~~~l--~~~----------------~~~~~~~~~  565 (721)
                        .....+  +|+|||+++++...   .+-...|++|..+.|+......+  ...                ......+.+
T Consensus       249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l  328 (462)
T 2ece_A          249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI  328 (462)
T ss_dssp             TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred             CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence              223334  45999999998876   11145565544444432111111  110                123467899


Q ss_pred             ccCCCEEEEEEccCCCCCCceeEEEEecC-CCceEEeeecCCC---------------CCcCCeEECCCCCEEEEEE
Q 004971          566 SPDGEWIAFASDRDNPGSGSFEMYLIHPN-GTGLRKLIQSGSA---------------GRANHPYFSPDGKSIVFTS  626 (721)
Q Consensus       566 SpDG~~l~~~~~~~~~~~~~~~i~~~d~~-~~~~~~l~~~~~~---------------~~~~~~~~SpDG~~l~~~~  626 (721)
                      ||||++|+++....      ..|.++|+. .++.+.+......               +....+++||||++|+++.
T Consensus       329 S~DGrfLYVSnrg~------d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          329 SLDDKFLYLSLWGI------GEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CTTSCEEEEEETTT------TEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCCEEEEEeCCC------CEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            99999998887653      379999985 3333322211111               1367899999999999877

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.16  E-value=5.1e-09  Score=106.72  Aligned_cols=243  Identities=10%  Similarity=0.094  Sum_probs=144.8

Q ss_pred             ceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEee
Q 004971          311 SIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCR  390 (721)
Q Consensus       311 ~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~  390 (721)
                      +++++.........+.|+| +|+.|++.....    ..|++|+. +++...+..   +......++++++|+.+ ++.. 
T Consensus        36 ~~~~l~~~~~~~egp~~~~-~g~~l~~~d~~~----~~i~~~~~-~g~~~~~~~---~~~~~~gl~~d~dG~l~-v~~~-  104 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWE-AQRTLVWSDLVG----RRVLGWRE-DGTVDVLLD---ATAFTNGNAVDAQQRLV-HCEH-  104 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEG-GGTEEEEEETTT----TEEEEEET-TSCEEEEEE---SCSCEEEEEECTTSCEE-EEET-
T ss_pred             ceEEEecCCcCccCCeEeC-CCCEEEEEECCC----CEEEEEeC-CCCEEEEeC---CCCccceeeECCCCCEE-EEEC-
Confidence            4555555544567899999 999888865433    34999998 555444332   23456678999999844 3332 


Q ss_pred             CCCCCCCCcceeEEEeccCCCCcceec-c----cCCCCceeCcCCCEEEEEe-------------------CCcEEEEEC
Q 004971          391 GGSTREDGNNQLLLENIKSPLPDISLF-R----FDGSFPSFSPKGDRIAFVE-------------------FPGVYVVNS  446 (721)
Q Consensus       391 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-~----~~~~~~~~SpDG~~la~~~-------------------~~~l~v~d~  446 (721)
                      ..       ..++..+..+....+... .    .....++++|||+ |+++.                   ...|+.++.
T Consensus       105 ~~-------~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~  176 (305)
T 3dr2_A          105 GR-------RAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP  176 (305)
T ss_dssp             TT-------TEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred             CC-------CEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence            22       235555543221111100 0    1234578999997 44421                   256999999


Q ss_pred             CCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-CCCCCcceEEccCCCE
Q 004971          447 DGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKW  524 (721)
Q Consensus       447 ~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~  524 (721)
                      ++++.+.+. ......++|+|||+.|+++..... ......+.+|.++..+   ....+.+.. .......++++++|+ 
T Consensus       177 ~~g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~~-~~~~~~i~~~~~~~~~---l~~~~~~~~~~~~~pdgi~~d~~G~-  251 (305)
T 3dr2_A          177 DGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQ-GHGSVEITAFAWRDGA---LHDRRHFASVPDGLPDGFCVDRGGW-  251 (305)
T ss_dssp             SSCCCEEEEEESSEEEEEECTTSSEEEEEECCC----CCCEEEEEEEETTE---EEEEEEEECCSSSCCCSEEECTTSC-
T ss_pred             CCCcEEEEecCCCCcceEEcCCCCEEEEEecCCc-CCCCCEEEEEEecCCC---ccCCeEEEECCCCCCCeEEECCCCC-
Confidence            888766554 234567899999999988753100 0001345555444221   011122221 223456789999999 


Q ss_pred             EEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971          525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       525 l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                      |++..    ...|++++.++..   +..+.... ....++|+||++.|+++...        .||.+++
T Consensus       252 lwv~~----~~gv~~~~~~g~~---~~~~~~~~-~~~~~~f~~d~~~L~it~~~--------~l~~~~~  304 (305)
T 3dr2_A          252 LWSSS----GTGVCVFDSDGQL---LGHIPTPG-TASNCTFDQAQQRLFITGGP--------CLWMLPL  304 (305)
T ss_dssp             EEECC----SSEEEEECTTSCE---EEEEECSS-CCCEEEECTTSCEEEEEETT--------EEEEEEC
T ss_pred             EEEec----CCcEEEECCCCCE---EEEEECCC-ceeEEEEeCCCCEEEEEcCC--------eEEEEEC
Confidence            55444    2359999996443   44444333 35789999999999988875        6888765

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.16  E-value=8.8e-09  Score=102.67  Aligned_cols=252  Identities=12%  Similarity=0.066  Sum_probs=157.7

Q ss_pred             CCEEEEEEecCCCCeeeEEEEECCCCceEEe---ecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEecc
Q 004971          332 NKFIAVATRRPTSSYRHIELFDLVKNKFIEL---TRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK  408 (721)
Q Consensus       332 G~~la~~~~~~g~~~~~l~l~dl~tg~~~~l---~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  408 (721)
                      |.+|+|...      ..|+.+++.+...+.+   .....+......++|+++++.|+++....        ..++..++.
T Consensus         1 ~~~l~~~~~------~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~--------~~I~~~~~~   66 (267)
T 1npe_A            1 GTHLLFAQT------GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISE--------PSIGRASLH   66 (267)
T ss_dssp             CEEEEEEEE------EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTT--------TEEEEEESS
T ss_pred             CcEEEEEcC------CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCC--------CEEEEEecC
Confidence            456777542      2489999876543211   00011123455789999999998865433        357777766


Q ss_pred             CCCCcceec-c-cCCCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCCCCC
Q 004971          409 SPLPDISLF-R-FDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFA  481 (721)
Q Consensus       409 ~~~~~~~~~-~-~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~~~~  481 (721)
                      +........ . .....+++++++..|+++.  ...|+++++++...+.+..   .....++++|++.+|+++..     
T Consensus        67 g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~-----  141 (267)
T 1npe_A           67 GGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW-----  141 (267)
T ss_dssp             SCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEEC-----
T ss_pred             CCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEEC-----
Confidence            543221111 1 1334578899888888884  5789999998776555541   35678899999999998863     


Q ss_pred             CCCCcEEEEEEEccCCCCccceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCc
Q 004971          482 SESSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD  560 (721)
Q Consensus       482 ~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~  560 (721)
                       ......|+.++.++.    ..+.+.. .......++++||+++|+++...  ...|+++|.+++.   ...+.......
T Consensus       142 -~~~~~~I~~~~~dg~----~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~--~~~I~~~~~~g~~---~~~~~~~~~~P  211 (267)
T 1npe_A          142 -NRDNPKIETSHMDGT----NRRILAQDNLGLPNGLTFDAFSSQLCWVDAG--THRAECLNPAQPG---RRKVLEGLQYP  211 (267)
T ss_dssp             -CSSSCEEEEEETTSC----CCEEEECTTCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTEEE---EEEEEECCCSE
T ss_pred             -CCCCcEEEEEecCCC----CcEEEEECCCCCCcEEEEcCCCCEEEEEECC--CCEEEEEecCCCc---eEEEecCCCCc
Confidence             112346666766653    3333332 22456678999999999988753  4689999998654   22222222222


Q ss_pred             eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCC
Q 004971          561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK  620 (721)
Q Consensus       561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~  620 (721)
                      ..+  .+|+..|+++....      ..|+++|.++++.......+.......++++||+-
T Consensus       212 ~gi--~~d~~~lyva~~~~------~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          212 FAV--TSYGKNLYYTDWKT------NSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEE--EEETTEEEEEETTT------TEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             eEE--EEeCCEEEEEECCC------CeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            334  45678888877653      37999999988765544322222467788888764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.14  E-value=9e-10  Score=118.16  Aligned_cols=209  Identities=10%  Similarity=0.015  Sum_probs=135.8

Q ss_pred             CCCceeCcCCCEEEEEeCCcEEEEECCC--------C---ce------EEEe-ecCceeeEEcCCCCeEEEEec-CCCCC
Q 004971          421 GSFPSFSPKGDRIAFVEFPGVYVVNSDG--------S---NR------RQVY-FKNAFSTVWDPVREAVVYTSG-GPEFA  481 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~~~~~l~v~d~~~--------g---~~------~~l~-~~~~~~~~~spdg~~la~~~~-~~~~~  481 (721)
                      ...+++++++..++..+...+.+++...        .   ..      ..+. ...+..++|+|||++|++... +    
T Consensus        39 ~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg----  114 (434)
T 2oit_A           39 SSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS----  114 (434)
T ss_dssp             CBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET----
T ss_pred             ccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc----
Confidence            4557899999888888766687766421        0   11      1111 345789999999999996310 0    


Q ss_pred             CCCCcEEEEEEEccCCC--Cc-cc---eEEcccCCCCCcceEEccC-CCEEEEEEeeCCceeEEEEECCCCcccceEECc
Q 004971          482 SESSEVDIISINVDDVD--GV-SA---VRRLTTNGKNNAFPSVSPD-GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT  554 (721)
Q Consensus       482 ~~~~~~~i~~~~~~~~~--~~-~~---~~~l~~~~~~~~~~~~SpD-g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~  554 (721)
                      ..++.++||++......  .. ..   ...+..+...+..++|+|+ ++.|+..+.   +..|++||+.++..  +....
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~---Dg~v~iwD~~~~~~--~~~~~  189 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA---DGSIAVLQVTETVK--VCATL  189 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET---TSCEEEEEESSSEE--EEEEE
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC---CCeEEEEEcCCCcc--eeecc
Confidence            25688999987653100  00 01   2233334567888999998 788887776   78899999998753  32333


Q ss_pred             CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC------CCCCcCCeEECCCCCEEEEEEec
Q 004971          555 EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG------SAGRANHPYFSPDGKSIVFTSDY  628 (721)
Q Consensus       555 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~------~~~~~~~~~~SpDG~~l~~~~~~  628 (721)
                      .+...+..++|+|||++|+.+..++       .|++||+. ++........      +...+..+.|++++.+++.....
T Consensus       190 ~~~~~v~~v~wspdg~~lasgs~dg-------~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~  261 (434)
T 2oit_A          190 PSTVAVTSVCWSPKGKQLAVGKQNG-------TVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA  261 (434)
T ss_dssp             CGGGCEEEEEECTTSSCEEEEETTS-------CEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred             CCCCceeEEEEcCCCCEEEEEcCCC-------cEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence            3445678899999999999999875       89999998 4433322210      11256788999999888766654


Q ss_pred             CCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971          629 GGISAEPISTPHQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~  656 (721)
                      .+..          .....+++|++...
T Consensus       262 dg~~----------~~~~~v~i~~l~~~  279 (434)
T 2oit_A          262 DGTL----------ETSPDVVMALLPKK  279 (434)
T ss_dssp             TCCS----------SSCCEEEEEECCCT
T ss_pred             CCcc----------CCCCceEEEEeccC
Confidence            4321          11235888887654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.14  E-value=4.1e-08  Score=97.74  Aligned_cols=215  Identities=11%  Similarity=0.064  Sum_probs=142.4

Q ss_pred             CCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe-e--cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY-F--KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~-~--~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      ..++|+++++.|+++.  ...|++++++++....+. .  .....++++|++..|+++..        ..-.|+.++.++
T Consensus        39 ~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~--------~~~~I~~~~~~g  110 (267)
T 1npe_A           39 IGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS--------QLDRIEVAKMDG  110 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET--------TTTEEEEEETTS
T ss_pred             EEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEEC--------CCCEEEEEEcCC
Confidence            4578999888998884  678999999887765554 2  35678999999999998863        223455666655


Q ss_pred             CCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEE
Q 004971          497 VDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAF  574 (721)
Q Consensus       497 ~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~  574 (721)
                      .    ..+.+.... .....++++|++.+|++.........|+++++++..   ...+. ........++++||++.|++
T Consensus       111 ~----~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~---~~~~~~~~~~~P~gia~d~~~~~lyv  183 (267)
T 1npe_A          111 T----QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN---RRILAQDNLGLPNGLTFDAFSSQLCW  183 (267)
T ss_dssp             C----SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC---CEEEECTTCSCEEEEEEETTTTEEEE
T ss_pred             C----CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC---cEEEEECCCCCCcEEEEcCCCCEEEE
Confidence            3    333333222 456678999999999888753234689999987654   22222 22233578999999999998


Q ss_pred             EEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971          575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD  654 (721)
Q Consensus       575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  654 (721)
                      +....      ..|++++++++..+.+..  .......+  .+|+..|+++....+                .|+++|.+
T Consensus       184 ~d~~~------~~I~~~~~~g~~~~~~~~--~~~~P~gi--~~d~~~lyva~~~~~----------------~v~~~d~~  237 (267)
T 1npe_A          184 VDAGT------HRAECLNPAQPGRRKVLE--GLQYPFAV--TSYGKNLYYTDWKTN----------------SVIAMDLA  237 (267)
T ss_dssp             EETTT------TEEEEEETTEEEEEEEEE--CCCSEEEE--EEETTEEEEEETTTT----------------EEEEEETT
T ss_pred             EECCC------CEEEEEecCCCceEEEec--CCCCceEE--EEeCCEEEEEECCCC----------------eEEEEeCC
Confidence            88653      389999998765544433  12222334  456788888765543                49999998


Q ss_pred             CCCe-EEeccCC-CCCCCceecCCc
Q 004971          655 GSDL-KRLTQNS-FEDGTPAWGPRF  677 (721)
Q Consensus       655 ~~~~-~~lt~~~-~~~~~~~~sp~~  677 (721)
                      +++. +.+.... ......++.|+.
T Consensus       238 ~g~~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          238 ISKEMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             TTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             CCCceEEEccccccccceeeecCcc
Confidence            7764 4554322 124556666553

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.13  E-value=4.8e-09  Score=107.95  Aligned_cols=211  Identities=12%  Similarity=0.119  Sum_probs=136.6

Q ss_pred             CCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971          422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD  498 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~  498 (721)
                      ..+.|+|+++.++++.  ...|++++.++++.+.+. ...+..+.|+|||+.++...         .  .|+.++..++ 
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~~---------~--gl~~~d~~~g-  119 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASD---------D--GLFLRDTATG-  119 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEET---------T--EEEEEETTTC-
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEEC---------C--CEEEEECCCC-
Confidence            4579999988888884  678999999988766555 45677899999998666531         1  2777776553 


Q ss_pred             CccceEEcccCC-----CCCcceEEccCCCEEEEEEeeC----CceeEEEEECCCCcccceEECcCCCcCceeeEEccCC
Q 004971          499 GVSAVRRLTTNG-----KNNAFPSVSPDGKWIVFRSTRT----GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG  569 (721)
Q Consensus       499 ~~~~~~~l~~~~-----~~~~~~~~SpDg~~l~~~s~~~----g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG  569 (721)
                         ..+.+....     .....++++|||+. ++.....    ....||+++  +++   +..+.........++|+|||
T Consensus       120 ---~~~~~~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~~~~~~~~~~l~~~~--~g~---~~~~~~~~~~~~~i~~s~dg  190 (326)
T 2ghs_A          120 ---VLTLHAELESDLPGNRSNDGRMHPSGAL-WIGTMGRKAETGAGSIYHVA--KGK---VTKLFADISIPNSICFSPDG  190 (326)
T ss_dssp             ---CEEEEECSSTTCTTEEEEEEEECTTSCE-EEEEEETTCCTTCEEEEEEE--TTE---EEEEEEEESSEEEEEECTTS
T ss_pred             ---cEEEEeeCCCCCCCCCCCCEEECCCCCE-EEEeCCCcCCCCceEEEEEe--CCc---EEEeeCCCcccCCeEEcCCC
Confidence               444443321     23456889999984 4444321    246899999  465   44443322234679999999


Q ss_pred             CEEEEEEccCCCCCCceeEEEEecC--CC-ce---EEeeec-CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCC
Q 004971          570 EWIAFASDRDNPGSGSFEMYLIHPN--GT-GL---RKLIQS-GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQY  642 (721)
Q Consensus       570 ~~l~~~~~~~~~~~~~~~i~~~d~~--~~-~~---~~l~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~  642 (721)
                      +.|+++....      ..|++++++  ++ +.   +.+... ........+.++++|..++ +....+            
T Consensus       191 ~~lyv~~~~~------~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwv-a~~~~~------------  251 (326)
T 2ghs_A          191 TTGYFVDTKV------NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN-ARWGEG------------  251 (326)
T ss_dssp             CEEEEEETTT------CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE-EEETTT------------
T ss_pred             CEEEEEECCC------CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEE-EEeCCC------------
Confidence            9998886542      389999986  55 32   222211 1123456788999997443 333222            


Q ss_pred             CCCccEEEEEcCCCCeEEeccCCCCCCCceec-CC
Q 004971          643 QPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWG-PR  676 (721)
Q Consensus       643 ~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~s-p~  676 (721)
                          .|++||.++.....+.........++|+ |+
T Consensus       252 ----~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d  282 (326)
T 2ghs_A          252 ----AVDRYDTDGNHIARYEVPGKQTTCPAFIGPD  282 (326)
T ss_dssp             ----EEEEECTTCCEEEEEECSCSBEEEEEEESTT
T ss_pred             ----EEEEECCCCCEEEEEECCCCCcEEEEEecCC
Confidence                4999999766556666544445678887 65

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.13  E-value=1.3e-08  Score=104.76  Aligned_cols=240  Identities=10%  Similarity=-0.033  Sum_probs=143.6

Q ss_pred             CCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC
Q 004971          331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP  410 (721)
Q Consensus       331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  410 (721)
                      ++++++.....    ...|.++|.++++......   .......++++++| +|+++... .       ..+.+.++.+.
T Consensus        52 ~~~~lyv~~~~----~~~v~viD~~t~~~~~~i~---~~~~p~~i~~~~~g-~lyv~~~~-~-------~~v~~iD~~t~  115 (328)
T 3dsm_A           52 RDGIGWIVVNN----SHVIFAIDINTFKEVGRIT---GFTSPRYIHFLSDE-KAYVTQIW-D-------YRIFIINPKTY  115 (328)
T ss_dssp             ETTEEEEEEGG----GTEEEEEETTTCCEEEEEE---CCSSEEEEEEEETT-EEEEEEBS-C-------SEEEEEETTTT
T ss_pred             ECCEEEEEEcC----CCEEEEEECcccEEEEEcC---CCCCCcEEEEeCCC-eEEEEECC-C-------CeEEEEECCCC
Confidence            56677766543    3459999999988533221   13456678899998 66665422 2       34677776554


Q ss_pred             CCc-ceeccc------CCCCceeCcCCCEEEEEe---CCcEEEEECCCCceE-EEe-ecCceeeEEcCCCCeEEEEecCC
Q 004971          411 LPD-ISLFRF------DGSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNRR-QVY-FKNAFSTVWDPVREAVVYTSGGP  478 (721)
Q Consensus       411 ~~~-~~~~~~------~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~~-~l~-~~~~~~~~~spdg~~la~~~~~~  478 (721)
                      ... ......      ....+++  ++.+|++..   ...|.++|+++++.. .+. ......+.++|||+ +++++.+.
T Consensus       116 ~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~  192 (328)
T 3dsm_A          116 EITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNK-MWTITDGG  192 (328)
T ss_dssp             EEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSE-EEEEBCCB
T ss_pred             eEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCC-EEEEECCC
Confidence            211 111111      2344566  566776663   568999999988754 343 34567889999997 55555321


Q ss_pred             CCC--CCCCcEEEEEEEccCCCCccceE-EcccC-CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc
Q 004971          479 EFA--SESSEVDIISINVDDVDGVSAVR-RLTTN-GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT  554 (721)
Q Consensus       479 ~~~--~~~~~~~i~~~~~~~~~~~~~~~-~l~~~-~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~  554 (721)
                      ...  .......|+.++..+.    ++. .+... ......++|+||+++|++...     .|+++|..+++......+.
T Consensus       193 ~~~~~~~~~~~~v~~id~~t~----~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-----~v~~~d~~t~~~~~~~~~~  263 (328)
T 3dsm_A          193 YEGSPYGYEAPSLYRIDAETF----TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-----DIWRMPVEADRVPVRPFLE  263 (328)
T ss_dssp             CTTCSSCBCCCEEEEEETTTT----EEEEEEECCTTCCCEEEEECTTSCEEEEESS-----SEEEEETTCSSCCSSCSBC
T ss_pred             ccCCccccCCceEEEEECCCC----eEEEEEecCCCCCceeEEEecCCCEEEEEcc-----EEEEEECCCCceeeeeeec
Confidence            000  0001256777777653    332 33322 235778999999999887642     8999999988731111122


Q ss_pred             CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEe
Q 004971          555 EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL  601 (721)
Q Consensus       555 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l  601 (721)
                      ........++++|++..|+++.....  .....|++||.+ ++....
T Consensus       264 ~~~~~p~gi~vdp~~g~lyva~~~~y--~~~~~V~v~d~~-g~~~~~  307 (328)
T 3dsm_A          264 FRDTKYYGLTVNPNNGEVYVADAIDY--QQQGIVYRYSPQ-GKLIDE  307 (328)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEECTTS--SSEEEEEEECTT-CCEEEE
T ss_pred             CCCCceEEEEEcCCCCeEEEEccccc--ccCCEEEEECCC-CCEEEE
Confidence            11234567899998777887762110  123589999998 554433

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.11  E-value=8.8e-09  Score=104.45  Aligned_cols=226  Identities=12%  Similarity=0.083  Sum_probs=137.8

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      ....+.|+| ++..|++.....    ..|+.||.++++...+..    ...+..+++++||+ |++.. .         .
T Consensus        14 ~~Egp~w~~-~~~~l~~~d~~~----~~i~~~d~~~~~~~~~~~----~~~~~~i~~~~dG~-l~v~~-~---------~   73 (297)
T 3g4e_A           14 CGESPVWEE-VSNSLLFVDIPA----KKVCRWDSFTKQVQRVTM----DAPVSSVALRQSGG-YVATI-G---------T   73 (297)
T ss_dssp             BEEEEEEET-TTTEEEEEETTT----TEEEEEETTTCCEEEEEC----SSCEEEEEEBTTSS-EEEEE-T---------T
T ss_pred             cccCCeEEC-CCCEEEEEECCC----CEEEEEECCCCcEEEEeC----CCceEEEEECCCCC-EEEEE-C---------C
Confidence            345789999 988898865432    459999999887543321    34567789999999 44432 1         2


Q ss_pred             eeEEEeccCCCC-cceecc-----cCCCCceeCcCCCEEEEE-e-----------CCcEEEEECCCCceEEEe--ecCce
Q 004971          401 QLLLENIKSPLP-DISLFR-----FDGSFPSFSPKGDRIAFV-E-----------FPGVYVVNSDGSNRRQVY--FKNAF  460 (721)
Q Consensus       401 ~l~~~~~~~~~~-~~~~~~-----~~~~~~~~SpDG~~la~~-~-----------~~~l~v~d~~~g~~~~l~--~~~~~  460 (721)
                      .++..+..++.. .+....     .....++++|||+.++.. .           ...|+.++.++ +...+.  .....
T Consensus        74 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~pn  152 (297)
T 3g4e_A           74 KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDISN  152 (297)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESBEE
T ss_pred             eEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeecccccc
Confidence            356666544311 111110     012346889999844333 1           13577777654 433333  33456


Q ss_pred             eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc---cCCCCCcceEEccCCCEEEEEEeeCCceeE
Q 004971          461 STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT---TNGKNNAFPSVSPDGKWIVFRSTRTGYKNL  537 (721)
Q Consensus       461 ~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l  537 (721)
                      .++|+|||+.|+++..      ..+.+.+|+++...+ .....+.+.   ........+++++||+ |+++...  ...|
T Consensus       153 gi~~spdg~~lyv~~~------~~~~i~~~~~d~~~G-~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~--~~~v  222 (297)
T 3g4e_A          153 GLDWSLDHKIFYYIDS------LSYSVDAFDYDLQTG-QISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYN--GGRV  222 (297)
T ss_dssp             EEEECTTSCEEEEEEG------GGTEEEEEEECTTTC-CEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEET--TTEE
T ss_pred             ceEEcCCCCEEEEecC------CCCcEEEEeccCCCC-cccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcC--CCEE
Confidence            8999999999988752      345566666542322 000112222   2223456689999996 5544432  4579


Q ss_pred             EEEECCCCcccceEECcCCCcCceeeEEc-cCCCEEEEEEccC
Q 004971          538 YIMDAEGGEGYGLHRLTEGPWSDTMCNWS-PDGEWIAFASDRD  579 (721)
Q Consensus       538 ~~~d~~~g~~~~~~~l~~~~~~~~~~~~S-pDG~~l~~~~~~~  579 (721)
                      ++||.++|+.  +..+......+..++|+ ||++.|+++....
T Consensus       223 ~~~d~~tG~~--~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          223 IRLDPVTGKR--LQTVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             EEECTTTCCE--EEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             EEEcCCCceE--EEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            9999998875  44444443456789998 9999999988753

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.04  E-value=4.5e-08  Score=103.91  Aligned_cols=230  Identities=12%  Similarity=0.027  Sum_probs=140.4

Q ss_pred             ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcce
Q 004971          322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQ  401 (721)
Q Consensus       322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~  401 (721)
                      ...++++| +|+ |++...    ....|++||+++++...+...   ..... ++|+|+|+.|+.....+.       ..
T Consensus       133 P~~la~d~-~g~-lyv~d~----~~~~I~~id~~~g~~~~~~~~---~~~~~-ia~~~~g~~l~~~d~~~~-------~~  195 (409)
T 3hrp_A          133 MWGIAAVG-NNT-VLAYQR----DDPRVRLISVDDNKVTTVHPG---FKGGK-PAVTKDKQRVYSIGWEGT-------HT  195 (409)
T ss_dssp             EEEEEECS-TTE-EEEEET----TTTEEEEEETTTTEEEEEEET---CCBCB-CEECTTSSEEEEEBSSTT-------CE
T ss_pred             ceEEEEeC-CCC-EEEEec----CCCcEEEEECCCCEEEEeecc---CCCCc-eeEecCCCcEEEEecCCC-------ce
Confidence            35678899 997 655433    234599999998876655432   22233 999999998887654443       25


Q ss_pred             eEEEeccCCCCccee------cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEE----ee---cC-ce-eeEEc
Q 004971          402 LLLENIKSPLPDISL------FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQV----YF---KN-AF-STVWD  465 (721)
Q Consensus       402 l~~~~~~~~~~~~~~------~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l----~~---~~-~~-~~~~s  465 (721)
                      ++..+..+.......      .......++++|++..|++.. .+.|++++.+++....+    ..   +. .. .++|+
T Consensus       196 I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~  275 (409)
T 3hrp_A          196 VYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYY  275 (409)
T ss_dssp             EEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEE
T ss_pred             EEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEe
Confidence            677766544321111      112345679999666777764 56799999998876555    21   11 23 89999


Q ss_pred             CCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC---------------CCCcceEEccCCCEEEEEEe
Q 004971          466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG---------------KNNAFPSVSPDGKWIVFRST  530 (721)
Q Consensus       466 pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~---------------~~~~~~~~SpDg~~l~~~s~  530 (721)
                      |++..|+++..        ....|+.++.++.     ...+....               .....++++|||+ |+++..
T Consensus       276 p~~g~lyv~d~--------~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~  341 (409)
T 3hrp_A          276 FVDSNFYMSDQ--------NLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDG  341 (409)
T ss_dssp             TTTTEEEEEET--------TTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEET
T ss_pred             CCCCEEEEEeC--------CCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeC
Confidence            98888888752        2335666665542     22222211               2345689999998 555542


Q ss_pred             eCCceeEEEEECCCCcccceEECcCC---------------CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971          531 RTGYKNLYIMDAEGGEGYGLHRLTEG---------------PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       531 ~~g~~~l~~~d~~~g~~~~~~~l~~~---------------~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                       .+...|+++++.+|+   +..+...               -.....++++||| .|+++....      ..|+++++
T Consensus       342 -~~~~~I~~~~~~~G~---v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~n------~~Ir~i~~  408 (409)
T 3hrp_A          342 -FKGYCLRKLDILDGY---VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWG------KAIRKYAV  408 (409)
T ss_dssp             -TTTCEEEEEETTTTE---EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEESTT------CEEEEEEE
T ss_pred             -CCCCEEEEEECCCCE---EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-CEEEEECCC------CeEEEEEe
Confidence             136789999977776   4433321               0124567888885 455555432      25666654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.03  E-value=3.7e-09  Score=113.78  Aligned_cols=138  Identities=10%  Similarity=0.036  Sum_probs=82.7

Q ss_pred             CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc----------cceEECcCCCcCceeeEEccCCCEEEEEEccCCC
Q 004971          512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG----------YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNP  581 (721)
Q Consensus       512 ~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~----------~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~  581 (721)
                      ....+.+||||+++++....  ..++.++|.++.+.          ....++..+.+ ..+.+|+||| .++.+..-.  
T Consensus       278 ~PhGv~~sPDGk~v~V~~~~--s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g-P~h~aF~~dG-~aY~t~~ld--  351 (595)
T 1fwx_A          278 NPHGCNMAPDKKHLCVAGKL--SPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG-PLHTAFDGRG-NAYTSLFLD--  351 (595)
T ss_dssp             SCCCEEECTTSSEEEEECTT--SSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC-EEEEEECTTS-EEEEEETTT--
T ss_pred             CceEEEEcCCCCEEEEeCCC--CCeEEEEECcccccccccccCcccceEEEcCCCCC-cceEEECCCC-eEEEEEecC--
Confidence            56778999999999887653  56899999985420          11334443333 4789999999 665555432  


Q ss_pred             CCCceeEEEEecCC----------CceEEeeecC----CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCcc
Q 004971          582 GSGSFEMYLIHPNG----------TGLRKLIQSG----SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGE  647 (721)
Q Consensus       582 ~~~~~~i~~~d~~~----------~~~~~l~~~~----~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~  647 (721)
                          .+|-+||+++          .+...-....    |........++|||++|+.+......++-+ .+|  .+|. .
T Consensus       352 ----sqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~-~gp--~~~~-~  423 (595)
T 1fwx_A          352 ----SQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN-VGP--LKPE-N  423 (595)
T ss_dssp             ----TEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC-CCS--SCCE-E
T ss_pred             ----CcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc-CCC--CCCC-c
Confidence                3788899876          2332222211    011113456799999998776654322100 111  1111 2


Q ss_pred             EEEEEcCCCCeEEecc
Q 004971          648 IFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       648 l~~~d~~~~~~~~lt~  663 (721)
                      -.++|+.+++++.+-+
T Consensus       424 ~ql~dis~~~m~lv~d  439 (595)
T 1fwx_A          424 DQLIDISGDKMVLVHD  439 (595)
T ss_dssp             EEEEECSSSSCEEEEE
T ss_pred             ceEEEcCCCcEEEEEE
Confidence            2567888888877765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.02  E-value=3.8e-09  Score=113.66  Aligned_cols=270  Identities=11%  Similarity=0.020  Sum_probs=155.4

Q ss_pred             cccCcee-e-cCCCCEEEEEEecC-------------CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEE
Q 004971          321 HAFTPAT-S-PGNNKFIAVATRRP-------------TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVG  385 (721)
Q Consensus       321 ~~~~~~~-s-p~dG~~la~~~~~~-------------g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~  385 (721)
                      ..+.+++ + | ++++++......             ...+..+.++|.++.+.......   ++.....++||||++++
T Consensus       135 ~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~V---gg~pd~~~~spdGk~~~  210 (595)
T 1fwx_A          135 GIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV---SGNLDNCDADYEGKWAF  210 (595)
T ss_dssp             SEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEE---SSCCCCEEECSSSSEEE
T ss_pred             CCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEe---CCCccceEECCCCCEEE
Confidence            4456665 5 9 999986653211             13456789999998764322211   22556789999999999


Q ss_pred             EEEeeCCCCC------CCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCC--Cc--eEEEe
Q 004971          386 YHKCRGGSTR------EDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDG--SN--RRQVY  455 (721)
Q Consensus       386 ~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~--g~--~~~l~  455 (721)
                      .++.......      ......+.+.+..             +.....++|+++..   +.+.++|..+  ++  ...+.
T Consensus       211 vt~~~se~~~~i~~~~~~~~d~v~V~~~~-------------~~~~~v~~Gk~~~i---~~V~VID~~~~~~~~~~~~Ip  274 (595)
T 1fwx_A          211 STSYNSEKGMTLPEMTAAEMDHIVVFNIA-------------EIEKAIAAGDYQEL---NGVKVVDGRKEASSLFTRYIP  274 (595)
T ss_dssp             EEESCTTCCSSHHHHTCCSEEEEEEEEHH-------------HHHHHHHHTCSEEE---TTEEEEECSGGGCCSSEEEEE
T ss_pred             EEecCcccCcchhhccccccceEEEeecc-------------ceeEeccCCCeeEE---CcEEEEeCcccCCceeEEEEe
Confidence            8776653210      0000111111111             11234566765443   5699999987  43  34555


Q ss_pred             -ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC-----CCC-cc-ceEEcccCCCCCcceEEccCCCEEEE
Q 004971          456 -FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD-----VDG-VS-AVRRLTTNGKNNAFPSVSPDGKWIVF  527 (721)
Q Consensus       456 -~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~-----~~~-~~-~~~~l~~~~~~~~~~~~SpDg~~l~~  527 (721)
                       ......+.+||||++++++..      ..+.+.++++....     ... .. ....+.. +....+.+|+||| ++++
T Consensus       275 vg~~PhGv~~sPDGk~v~V~~~------~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG-~aY~  346 (595)
T 1fwx_A          275 IANNPHGCNMAPDKKHLCVAGK------LSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRG-NAYT  346 (595)
T ss_dssp             EESSCCCEEECTTSSEEEEECT------TSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTS-EEEE
T ss_pred             cCCCceEEEEcCCCCEEEEeCC------CCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECCCC-eEEE
Confidence             557788999999999999863      45677777766321     000 00 1122222 2467788999999 7666


Q ss_pred             EEeeCCceeEEEEECCCCc--------ccceEECcCCCc-----CceeeEEccCCCEEEEEEccC-CC-----CCCceeE
Q 004971          528 RSTRTGYKNLYIMDAEGGE--------GYGLHRLTEGPW-----SDTMCNWSPDGEWIAFASDRD-NP-----GSGSFEM  588 (721)
Q Consensus       528 ~s~~~g~~~l~~~d~~~g~--------~~~~~~l~~~~~-----~~~~~~~SpDG~~l~~~~~~~-~~-----~~~~~~i  588 (721)
                      ....  +.+|.+||++++.        ...+..+.-+..     .......+|||++|+...... +.     +.....-
T Consensus       347 t~~l--dsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~  424 (595)
T 1fwx_A          347 SLFL--DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPEND  424 (595)
T ss_dssp             EETT--TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEE
T ss_pred             EEec--CCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcc
Confidence            6554  5678889987621        112444443311     012346689999998776542 10     0112233


Q ss_pred             EEEecCCCceEEeeecCCCCCcCCeEECCCCC
Q 004971          589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGK  620 (721)
Q Consensus       589 ~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~  620 (721)
                      .++|+.+++.+.+-........+...+.|..+
T Consensus       425 ql~dis~~~m~lv~d~p~~~ePh~~~i~~~~~  456 (595)
T 1fwx_A          425 QLIDISGDKMVLVHDGPTFAEPHDAIAVHPSI  456 (595)
T ss_dssp             EEEECSSSSCEEEEEEEESSCCCCEEEECTTT
T ss_pred             eEEEcCCCcEEEEEEEcCCCCCCceEEccHHH
Confidence            77888888877665432334455666666554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.99  E-value=8.4e-08  Score=101.81  Aligned_cols=204  Identities=12%  Similarity=0.061  Sum_probs=132.2

Q ss_pred             CCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe-e-cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971          422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY-F-KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV  497 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~-~-~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~  497 (721)
                      ..++|+++|+ |+++.  ...|+++|++++....+. . .... ++|+|+++.|+++..       .+...|+.++..+.
T Consensus       134 ~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~-------~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          134 WGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGW-------EGTHTVYVYMKASG  204 (409)
T ss_dssp             EEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBS-------STTCEEEEEEGGGT
T ss_pred             eEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEec-------CCCceEEEEEcCCC
Confidence            3578999986 66663  578999999988877665 2 2233 999999999888752       22237777777653


Q ss_pred             CCccceEEc----ccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC-cC-CCcCc-e-eeEEccCC
Q 004971          498 DGVSAVRRL----TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL-TE-GPWSD-T-MCNWSPDG  569 (721)
Q Consensus       498 ~~~~~~~~l----~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l-~~-~~~~~-~-~~~~SpDG  569 (721)
                         .....+    .........++++|++..|++...   ...|+++|.+++.......+ .. ..... . .++|+|++
T Consensus       205 ---~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~---~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~  278 (409)
T 3hrp_A          205 ---WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS---NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD  278 (409)
T ss_dssp             ---TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT---TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT
T ss_pred             ---ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC---CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC
Confidence               122333    213345677899997777887432   56899999998763111111 11 11222 3 89999987


Q ss_pred             CEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC-C------------CCCcCCeEECCCCCEEEEEEe-cCCCcCCC
Q 004971          570 EWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG-S------------AGRANHPYFSPDGKSIVFTSD-YGGISAEP  635 (721)
Q Consensus       570 ~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~------------~~~~~~~~~SpDG~~l~~~~~-~~~~~~~~  635 (721)
                      ..|+++....      ..|++++.++. ...+.... .            -.....++++|||+ |+++.. ...     
T Consensus       279 g~lyv~d~~~------~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~-----  345 (409)
T 3hrp_A          279 SNFYMSDQNL------SSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGY-----  345 (409)
T ss_dssp             TEEEEEETTT------TEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTC-----
T ss_pred             CEEEEEeCCC------CEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCC-----
Confidence            8888877543      38999998765 33332210 0            12245689999999 666554 332     


Q ss_pred             CCCCCCCCCCccEEEEEcCCCCeEEeccC
Q 004971          636 ISTPHQYQPYGEIFKIKLDGSDLKRLTQN  664 (721)
Q Consensus       636 ~~~~~~~~~~~~l~~~d~~~~~~~~lt~~  664 (721)
                                 .|+++++.++....+...
T Consensus       346 -----------~I~~~~~~~G~v~~~~g~  363 (409)
T 3hrp_A          346 -----------CLRKLDILDGYVSTVAGQ  363 (409)
T ss_dssp             -----------EEEEEETTTTEEEEEEEC
T ss_pred             -----------EEEEEECCCCEEEEEeCC
Confidence                       499999777777766653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.97  E-value=1.1e-07  Score=97.92  Aligned_cols=200  Identities=9%  Similarity=0.101  Sum_probs=121.9

Q ss_pred             CCceeCcCCCEEEEEe--CCcEEEEECCCC--ceEEEee-----------cCceeeEEcCCCCeEEEEecCCCCCCCCCc
Q 004971          422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGS--NRRQVYF-----------KNAFSTVWDPVREAVVYTSGGPEFASESSE  486 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g--~~~~l~~-----------~~~~~~~~spdg~~la~~~~~~~~~~~~~~  486 (721)
                      ..++++|+|+ |+++.  ...|++++.++.  ....+..           ..+..++++|++..|+++..       ...
T Consensus        94 ~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~-------~~~  165 (329)
T 3fvz_A           94 HGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG-------YCN  165 (329)
T ss_dssp             EEEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC-------SSC
T ss_pred             eEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC-------CCC
Confidence            3478999998 55553  678999998876  3444421           14567999995555655531       123


Q ss_pred             EEEEEEEccCCCCccceEEcccCC----------CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-
Q 004971          487 VDIISINVDDVDGVSAVRRLTTNG----------KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-  555 (721)
Q Consensus       487 ~~i~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-  555 (721)
                      ..|+.++.++.    ....+....          .....++++||+..|+++...  ...|.+|+.++|+.  +..+.. 
T Consensus       166 ~~I~~~~~~g~----~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~--~~~I~~~~~~~G~~--~~~~~~~  237 (329)
T 3fvz_A          166 SRIVQFSPSGK----FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE--NGRIQCFKTDTKEF--VREIKHA  237 (329)
T ss_dssp             CEEEEECTTSC----EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT--TTEEEEEETTTCCE--EEEECCT
T ss_pred             CeEEEEcCCCC----EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC--CCEEEEEECCCCcE--EEEEecc
Confidence            34455555443    333333211          235678999997777777643  56899999997774  444432 


Q ss_pred             -CCcCceeeEEccCCCEEEEEEccCCC-CCCceeEEEEecCCCceEEeeec--CCCCCcCCeEECCCCCEEEEEEecCCC
Q 004971          556 -GPWSDTMCNWSPDGEWIAFASDRDNP-GSGSFEMYLIHPNGTGLRKLIQS--GSAGRANHPYFSPDGKSIVFTSDYGGI  631 (721)
Q Consensus       556 -~~~~~~~~~~SpDG~~l~~~~~~~~~-~~~~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~~~SpDG~~l~~~~~~~~~  631 (721)
                       .......++|+| | .++.......- ......|++|+..+++.......  .+......++++||| .|+++....+ 
T Consensus       238 ~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~-  313 (329)
T 3fvz_A          238 SFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTN-  313 (329)
T ss_dssp             TTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSC-
T ss_pred             ccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCC-
Confidence             223456788999 3 33333221100 11334799999988876665421  133446778999999 6666655443 


Q ss_pred             cCCCCCCCCCCCCCccEEEEEcCCC
Q 004971          632 SAEPISTPHQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       632 ~~~~~~~~~~~~~~~~l~~~d~~~~  656 (721)
                                     .|++|++++.
T Consensus       314 ---------------~I~~~~~~~~  323 (329)
T 3fvz_A          314 ---------------TVWKFTLTEK  323 (329)
T ss_dssp             ---------------CEEEEEEEEC
T ss_pred             ---------------EEEEEeCCcc
Confidence                           4999998764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.97  E-value=4.4e-08  Score=99.83  Aligned_cols=200  Identities=13%  Similarity=0.103  Sum_probs=124.0

Q ss_pred             CCceeCcC-CCEEEEEe-CCcEEEEECCCCceEEE-ee-------cCceeeEEcCCCCeEEEEecCCC-------CCCCC
Q 004971          422 SFPSFSPK-GDRIAFVE-FPGVYVVNSDGSNRRQV-YF-------KNAFSTVWDPVREAVVYTSGGPE-------FASES  484 (721)
Q Consensus       422 ~~~~~SpD-G~~la~~~-~~~l~v~d~~~g~~~~l-~~-------~~~~~~~~spdg~~la~~~~~~~-------~~~~~  484 (721)
                      ..+++++| |+ |+++. ...|++++.+ ++...+ ..       ..+..++++++|+.+ ++.....       .....
T Consensus        74 ~~i~~~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~-v~~~~~~~~~~~~~~~~~~  150 (314)
T 1pjx_A           74 AGCQCDRDANQ-LFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLW-ITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             EEEEECSSSSE-EEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEE-EEECBCBCTTSCCCBTTSS
T ss_pred             ceEEEecCCCc-EEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEE-EEecCcccccccccccccC
Confidence            45688999 64 55543 5589999998 776665 31       236789999999644 4432100       00111


Q ss_pred             CcEEEEEEEccCCCCccceEEcccCCCCCcceEEc----cCCCEEEEEEeeCCceeEEEEECC-CCccc---ceEECcCC
Q 004971          485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVS----PDGKWIVFRSTRTGYKNLYIMDAE-GGEGY---GLHRLTEG  556 (721)
Q Consensus       485 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S----pDg~~l~~~s~~~g~~~l~~~d~~-~g~~~---~~~~l~~~  556 (721)
                      ....||.++.++     ....+.........++|+    |||+.|++....  ...|++|+.+ +++..   ....+...
T Consensus       151 ~~~~l~~~~~~g-----~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~--~~~i~~~~~~~~g~~~~~~~~~~~~~~  223 (314)
T 1pjx_A          151 KFGSIYCFTTDG-----QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP--TKKLWSYDIKGPAKIENKKVWGHIPGT  223 (314)
T ss_dssp             SCEEEEEECTTS-----CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT--TTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             CCCeEEEECCCC-----CEEEeccCCCCcceEEEecccCCCCCEEEEEECC--CCeEEEEECCCCCccccceEEEECCCC
Confidence            236788887653     333333322345668999    999988877642  4679999876 44321   12223322


Q ss_pred             C-cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCC
Q 004971          557 P-WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEP  635 (721)
Q Consensus       557 ~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~  635 (721)
                      . .....+++++||+.++......       .|++||.++++....... +...+..++|+|||++|++.....+     
T Consensus       224 ~~~~p~~i~~d~~G~l~v~~~~~~-------~i~~~d~~~g~~~~~~~~-~~~~~~~i~~~~dg~~l~v~~~~~~-----  290 (314)
T 1pjx_A          224 HEGGADGMDFDEDNNLLVANWGSS-------HIEVFGPDGGQPKMRIRC-PFEKPSNLHFKPQTKTIFVTEHENN-----  290 (314)
T ss_dssp             SSCEEEEEEEBTTCCEEEEEETTT-------EEEEECTTCBSCSEEEEC-SSSCEEEEEECTTSSEEEEEETTTT-----
T ss_pred             CCCCCCceEECCCCCEEEEEcCCC-------EEEEEcCCCCcEeEEEeC-CCCCceeEEECCCCCEEEEEeCCCC-----
Confidence            2 3356789999997444433332       799999985554333322 3355678899999998887765543     


Q ss_pred             CCCCCCCCCCccEEEEEcCC
Q 004971          636 ISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       636 ~~~~~~~~~~~~l~~~d~~~  655 (721)
                                 .|++++++.
T Consensus       291 -----------~l~~~~~~~  299 (314)
T 1pjx_A          291 -----------AVWKFEWQR  299 (314)
T ss_dssp             -----------EEEEEECSS
T ss_pred             -----------eEEEEeCCC
Confidence                       499998764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=98.96  E-value=3.6e-08  Score=105.59  Aligned_cols=158  Identities=8%  Similarity=-0.032  Sum_probs=107.4

Q ss_pred             CCCceeCcCCCEEEE---E--eCCcEEEEECCCC-----ce----EEEe-----ecCceeeEEcCC-CCeEEEEecCCCC
Q 004971          421 GSFPSFSPKGDRIAF---V--EFPGVYVVNSDGS-----NR----RQVY-----FKNAFSTVWDPV-REAVVYTSGGPEF  480 (721)
Q Consensus       421 ~~~~~~SpDG~~la~---~--~~~~l~v~d~~~g-----~~----~~l~-----~~~~~~~~~spd-g~~la~~~~~~~~  480 (721)
                      ...++|+|||++|++   .  .++.|.+||+.++     +.    ..+.     ...+..++|+|+ +..|+.++     
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s-----  169 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL-----  169 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE-----
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE-----
Confidence            456799999999986   3  2678999998654     11    1121     456889999998 67777765     


Q ss_pred             CCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC----
Q 004971          481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG----  556 (721)
Q Consensus       481 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~----  556 (721)
                        .++.+.||++....     .......+...+..++|+|||++|+..+.   +..|++||.. ++.  ...+..+    
T Consensus       170 --~Dg~v~iwD~~~~~-----~~~~~~~~~~~v~~v~wspdg~~lasgs~---dg~v~iwd~~-~~~--~~~~~~~~~~~  236 (434)
T 2oit_A          170 --ADGSIAVLQVTETV-----KVCATLPSTVAVTSVCWSPKGKQLAVGKQ---NGTVVQYLPT-LQE--KKVIPCPPFYE  236 (434)
T ss_dssp             --TTSCEEEEEESSSE-----EEEEEECGGGCEEEEEECTTSSCEEEEET---TSCEEEECTT-CCE--EEEECCCTTCC
T ss_pred             --CCCeEEEEEcCCCc-----ceeeccCCCCceeEEEEcCCCCEEEEEcC---CCcEEEEccC-Ccc--cccccCCcccC
Confidence              57899999986532     22223334456788999999999999886   7789999998 442  2223221    


Q ss_pred             ---CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971          557 ---PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       557 ---~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                         ...+..+.|++++.+++......+.......+++|++...
T Consensus       237 ~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          237 SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence               1256789999998877665543211112346888998654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.95  E-value=4e-07  Score=94.66  Aligned_cols=236  Identities=14%  Similarity=0.051  Sum_probs=131.8

Q ss_pred             eee--cCCCCEEEEEEecCCCCeeeEEEEECCCC----ceEEeec---cc-C-CCCcccCcEEcCCCCEEEEEEeeCCCC
Q 004971          326 ATS--PGNNKFIAVATRRPTSSYRHIELFDLVKN----KFIELTR---FV-S-PKTHHLNPFISPDSSRVGYHKCRGGST  394 (721)
Q Consensus       326 ~~s--p~dG~~la~~~~~~g~~~~~l~l~dl~tg----~~~~l~~---~~-~-~~~~~~~~~~Spdg~~l~~~~~~~~~~  394 (721)
                      .++  + ++++|+.....    ..+|+++|+++.    +......   .. . .......+..+|||  |+.....+. .
T Consensus        88 ~~~~~~-~r~~l~v~~l~----s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~-~  159 (462)
T 2ece_A           88 NGKPNI-ERRFLIVPGLR----SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNE-E  159 (462)
T ss_dssp             TCCTTC-CSCEEEEEBTT----TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEET-T
T ss_pred             ccCCCc-cCCEEEEccCC----CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCc-C
Confidence            446  7 89988774332    345999999765    2222221   00 0 01123345788999  444333221 1


Q ss_pred             CCCCcceeEEEeccCCCC--cceecccC---CCCceeCcCCCEEEEEe--------------------CCcEEEEECCCC
Q 004971          395 REDGNNQLLLENIKSPLP--DISLFRFD---GSFPSFSPKGDRIAFVE--------------------FPGVYVVNSDGS  449 (721)
Q Consensus       395 ~~~~~~~l~~~~~~~~~~--~~~~~~~~---~~~~~~SpDG~~la~~~--------------------~~~l~v~d~~~g  449 (721)
                      + .+...+.+.+..+...  .+......   ...+.|+|+++.++...                    ...|.+||++++
T Consensus       160 g-~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~  238 (462)
T 2ece_A          160 G-EGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR  238 (462)
T ss_dssp             S-CSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred             C-CCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence            1 1124577777664421  11101011   12357799999766663                    578999999987


Q ss_pred             ceE-EEeec----CceeeE--EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc--ccC-----------
Q 004971          450 NRR-QVYFK----NAFSTV--WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL--TTN-----------  509 (721)
Q Consensus       450 ~~~-~l~~~----~~~~~~--~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l--~~~-----------  509 (721)
                      +.. .+..+    ....+.  ++|||+++++++.- ..+...+++.+|..+. +.  ....+.+  ...           
T Consensus       239 k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~-~~~~Lss~V~v~~~d~-g~--~~~~~vIdi~~~~v~~~lp~~~~  314 (462)
T 2ece_A          239 KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVV-SLKDLSSSIWLWFYED-GK--WNAEKVIEIPAEPLEGNLPEILK  314 (462)
T ss_dssp             EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEE-ETTTCCEEEEEEEEET-TE--EEEEEEEEECCEECCSSCCGGGG
T ss_pred             cEeeEEecCCCCCccceeEeeECCCCCEEEEEEee-eccCCCceEEEEEecC-Cc--eeEEEEEeCCCcccccccccccc
Confidence            643 33322    333444  49999999988720 0001345666666553 11  1111111  110           


Q ss_pred             -----CCCCcceEEccCCCEEEEEEeeCCceeEEEEECC-CCcccceEECcCC-C-------------cCceeeEEccCC
Q 004971          510 -----GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE-GGEGYGLHRLTEG-P-------------WSDTMCNWSPDG  569 (721)
Q Consensus       510 -----~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~-~g~~~~~~~l~~~-~-------------~~~~~~~~SpDG  569 (721)
                           ......+.+|||||+|+++...  ...|.++|+. .++.+.+..+..+ .             .....+.+||||
T Consensus       315 ~f~~~~~~pa~I~lS~DGrfLYVSnrg--~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG  392 (462)
T 2ece_A          315 PFKAVPPLVTDIDISLDDKFLYLSLWG--IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG  392 (462)
T ss_dssp             GGTEECCCCCCEEECTTSCEEEEEETT--TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS
T ss_pred             ccccCCCceeEEEECCCCCEEEEEeCC--CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC
Confidence                 1245678999999999877653  4578888875 3333334444432 1             124678999999


Q ss_pred             CEEEEEE
Q 004971          570 EWIAFAS  576 (721)
Q Consensus       570 ~~l~~~~  576 (721)
                      ++|+++.
T Consensus       393 k~LyVaN  399 (462)
T 2ece_A          393 RRVYVTN  399 (462)
T ss_dssp             SEEEEEC
T ss_pred             CEEEEEc
Confidence            9999988

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.95  E-value=1.4e-07  Score=93.87  Aligned_cols=234  Identities=9%  Similarity=0.025  Sum_probs=137.5

Q ss_pred             cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecc--cCCCCceeCcCCCEEEEEe-CCcEEEEECC
Q 004971          371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFR--FDGSFPSFSPKGDRIAFVE-FPGVYVVNSD  447 (721)
Q Consensus       371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~SpDG~~la~~~-~~~l~v~d~~  447 (721)
                      ....++++++|+ |+++.....       ..++..+..+.........  .....++++++|+ |++.. .+.|++++.+
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~-------~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~   95 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMY-------GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAG   95 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSS-------CEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTT
T ss_pred             CccceEECCCCC-EEEEccCCC-------CcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcCCCEEEEEeCC
Confidence            344678889887 544132222       3455555433321111111  2345678999998 55554 6789999998


Q ss_pred             CCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCC
Q 004971          448 GSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGK  523 (721)
Q Consensus       448 ~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~  523 (721)
                      ++....+.   ...+..++++++|+ |+++..      ..+  .|+.++..+.    ......... .....++++|+|+
T Consensus        96 ~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~------~~~--~i~~~~~~~~----~~~~~~~~~~~~p~~i~~~~~g~  162 (270)
T 1rwi_B           96 SNNQTVLPFDGLNYPEGLAVDTQGA-VYVADR------GNN--RVVKLAAGSK----TQTVLPFTGLNDPDGVAVDNSGN  162 (270)
T ss_dssp             CSCCEECCCCSCSSEEEEEECTTCC-EEEEEG------GGT--EEEEECTTCC----SCEECCCCSCCSCCCEEECTTCC
T ss_pred             CceEeeeecCCcCCCcceEECCCCC-EEEEEC------CCC--EEEEEECCCc----eeEeeccccCCCceeEEEeCCCC
Confidence            87665554   14567889999997 555431      123  3444444332    222222222 3567789999998


Q ss_pred             EEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971          524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI  602 (721)
Q Consensus       524 ~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  602 (721)
                       |++....  ...|+++|.+++.   ..... ........++++++| .|+++....      ..|++++.++.......
T Consensus       163 -l~v~~~~--~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~------~~v~~~~~~~~~~~~~~  229 (270)
T 1rwi_B          163 -VYVTDTD--NNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAG-TVYVTEHNT------NQVVKLLAGSTTSTVLP  229 (270)
T ss_dssp             -EEEEEGG--GTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTC-CEEEEETTT------SCEEEECTTCSCCEECC
T ss_pred             -EEEEECC--CCEEEEEecCCCc---eEeecccCCCCceEEEECCCC-CEEEEECCC------CcEEEEcCCCCcceeec
Confidence             5555432  4589999998766   33332 222345788999999 466655432      27999999876554432


Q ss_pred             ecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971          603 QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       603 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  657 (721)
                      .. .......+++++||+ |+++....+                .|+++++...+
T Consensus       230 ~~-~~~~p~~i~~~~~g~-l~v~~~~~~----------------~v~~~~~~~~~  266 (270)
T 1rwi_B          230 FT-GLNTPLAVAVDSDRT-VYVADRGND----------------RVVKLTSLEHH  266 (270)
T ss_dssp             CC-SCSCEEEEEECTTCC-EEEEEGGGT----------------EEEEECCCGGG
T ss_pred             cC-CCCCceeEEECCCCC-EEEEECCCC----------------EEEEEcCCCcc
Confidence            21 223467789999997 655555443                48888876543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.93  E-value=2.4e-07  Score=94.35  Aligned_cols=246  Identities=11%  Similarity=0.021  Sum_probs=141.6

Q ss_pred             cccCceeecCCCCEEEEEEe---cCCCCeeeEEEEECCCCceEEeecc--cCCCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971          321 HAFTPATSPGNNKFIAVATR---RPTSSYRHIELFDLVKNKFIELTRF--VSPKTHHLNPFISPDSSRVGYHKCRGGSTR  395 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~---~~g~~~~~l~l~dl~tg~~~~l~~~--~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~  395 (721)
                      ....++|++ +|+ |++...   ..+.....|++||+.+++...+...  ......+..+++++++..|+++...     
T Consensus        19 ~~~~~~~~~-~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~-----   91 (314)
T 1pjx_A           19 GAEGPVFDK-NGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-----   91 (314)
T ss_dssp             TCEEEEECT-TSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----
T ss_pred             CccCceECC-CCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-----
Confidence            446788999 996 554410   0011234599999988876554320  0012345678899994455554432     


Q ss_pred             CCCcceeEEEeccCCCCcc-eec-----ccCCCCceeCcCCCEEEEEeC----------------CcEEEEECCCCceEE
Q 004971          396 EDGNNQLLLENIKSPLPDI-SLF-----RFDGSFPSFSPKGDRIAFVEF----------------PGVYVVNSDGSNRRQ  453 (721)
Q Consensus       396 ~~~~~~l~~~~~~~~~~~~-~~~-----~~~~~~~~~SpDG~~la~~~~----------------~~l~v~d~~~g~~~~  453 (721)
                          ..++..+..+....+ ...     ......++++++|+.++....                ..|+.++.+ ++...
T Consensus        92 ----~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~  166 (314)
T 1pjx_A           92 ----LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ  166 (314)
T ss_dssp             ----TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred             ----CCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence                235556554211111 000     012345788999964443322                478999887 55544


Q ss_pred             Ee--ecCceeeEEc----CCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc-cceEEcccCC-CCCcceEEccCCCEE
Q 004971          454 VY--FKNAFSTVWD----PVREAVVYTSGGPEFASESSEVDIISINVDDVDGV-SAVRRLTTNG-KNNAFPSVSPDGKWI  525 (721)
Q Consensus       454 l~--~~~~~~~~~s----pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~l~~~~-~~~~~~~~SpDg~~l  525 (721)
                      +.  ......++|+    |||+.|+++..      ..+.+.+|+++..+.... .....+.... .....+++++||+.+
T Consensus       167 ~~~~~~~~~~i~~~~~~d~dg~~l~v~~~------~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~  240 (314)
T 1pjx_A          167 VDTAFQFPNGIAVRHMNDGRPYQLIVAET------PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL  240 (314)
T ss_dssp             EEEEESSEEEEEEEECTTSCEEEEEEEET------TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred             eccCCCCcceEEEecccCCCCCEEEEEEC------CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEE
Confidence            43  3455678999    99998888752      345666776652221000 0111122221 345668899999754


Q ss_pred             EEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971          526 VFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       526 ~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      +....   ...|++||.++++.  ...+......+..++|+|||+.|+++....      ..|++++++.
T Consensus       241 v~~~~---~~~i~~~d~~~g~~--~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~------~~l~~~~~~~  299 (314)
T 1pjx_A          241 VANWG---SSHIEVFGPDGGQP--KMRIRCPFEKPSNLHFKPQTKTIFVTEHEN------NAVWKFEWQR  299 (314)
T ss_dssp             EEEET---TTEEEEECTTCBSC--SEEEECSSSCEEEEEECTTSSEEEEEETTT------TEEEEEECSS
T ss_pred             EEEcC---CCEEEEEcCCCCcE--eEEEeCCCCCceeEEECCCCCEEEEEeCCC------CeEEEEeCCC
Confidence            43333   45899999986663  333333334457889999999888877642      2799998865

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.88  E-value=7.2e-07  Score=89.84  Aligned_cols=273  Identities=12%  Similarity=0.047  Sum_probs=151.7

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      .+..+++++ +|+ +++....    ...|.++|.. ++...... .........++++++|+ +++... ..       .
T Consensus        16 ~~~~i~~d~-~g~-l~v~~~~----~~~v~~~d~~-~~~~~~~~-~~~~~~~~~i~~~~~g~-l~v~~~-~~-------~   78 (299)
T 2z2n_A           16 GPYGITVSD-KGK-VWITQHK----ANMISCINLD-GKITEYPL-PTPDAKVMCLTISSDGE-VWFTEN-AA-------N   78 (299)
T ss_dssp             CEEEEEECT-TSC-EEEEETT----TTEEEEECTT-CCEEEEEC-SSTTCCEEEEEECTTSC-EEEEET-TT-------T
T ss_pred             CccceEECC-CCC-EEEEecC----CCcEEEEcCC-CCeEEecC-CcccCceeeEEECCCCC-EEEeCC-CC-------C
Confidence            456788889 987 4443321    2349999988 66544331 11234466788999987 444332 22       2


Q ss_pred             eeEEEeccCCCCccee--cccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeEEE
Q 004971          401 QLLLENIKSPLPDISL--FRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVY  473 (721)
Q Consensus       401 ~l~~~~~~~~~~~~~~--~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~  473 (721)
                      .++..+..+....+..  .......++++++|+.++.. ....|++++. +++...+.    ...+..+.++++|+ +++
T Consensus        79 ~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v  156 (299)
T 2z2n_A           79 KIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWF  156 (299)
T ss_dssp             EEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEE
T ss_pred             eEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEE
Confidence            3555554322111110  01122346788888643333 2568999998 55554443    23466788999985 444


Q ss_pred             EecCCCCCCCCCcEEEEEEEccCCCCccceEEc--ccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE
Q 004971          474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRL--TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH  551 (721)
Q Consensus       474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~  551 (721)
                      +..        ....|+.++..+     ....+  .........++++++|+ |++....  ...|+++|. +++... .
T Consensus       157 ~~~--------~~~~i~~~~~~g-----~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~--~~~i~~~~~-~g~~~~-~  218 (299)
T 2z2n_A          157 TEN--------QNNAIGRITESG-----DITEFKIPTPASGPVGITKGNDDA-LWFVEII--GNKIGRITT-SGEITE-F  218 (299)
T ss_dssp             EET--------TTTEEEEECTTC-----CEEEEECSSTTCCEEEEEECTTSS-EEEEETT--TTEEEEECT-TCCEEE-E
T ss_pred             EeC--------CCCEEEEEcCCC-----cEEEeeCCCCCCcceeEEECCCCC-EEEEccC--CceEEEECC-CCcEEE-E
Confidence            431        223455555532     33332  22223456788999988 4444421  457999999 666311 1


Q ss_pred             ECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCC
Q 004971          552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGI  631 (721)
Q Consensus       552 ~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~  631 (721)
                      .+.........++++++|+ |+++....      ..|+++|.+ ++...+........+..+++ ++|+. ++....+  
T Consensus       219 ~~~~~~~~~~~i~~~~~g~-l~v~~~~~------~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~-~~g~l-~v~~~~~--  286 (299)
T 2z2n_A          219 KIPTPNARPHAITAGAGID-LWFTEWGA------NKIGRLTSN-NIIEEYPIQIKSAEPHGICF-DGETI-WFAMECD--  286 (299)
T ss_dssp             ECSSTTCCEEEEEECSTTC-EEEEETTT------TEEEEEETT-TEEEEEECSSSSCCEEEEEE-CSSCE-EEEETTT--
T ss_pred             ECCCCCCCceeEEECCCCC-EEEeccCC------ceEEEECCC-CceEEEeCCCCCCccceEEe-cCCCE-EEEecCC--
Confidence            1222234457889999998 55555321      279999984 55444432212344567788 88774 4443322  


Q ss_pred             cCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971          632 SAEPISTPHQYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       632 ~~~~~~~~~~~~~~~~l~~~d~~~~~  657 (721)
                                     .|+++++++++
T Consensus       287 ---------------~l~~~~~~~~~  297 (299)
T 2z2n_A          287 ---------------KIGKLTLIKDN  297 (299)
T ss_dssp             ---------------EEEEEEEC---
T ss_pred             ---------------cEEEEEcCccc
Confidence                           38888877654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.87  E-value=3.5e-07  Score=91.83  Aligned_cols=177  Identities=14%  Similarity=0.177  Sum_probs=105.2

Q ss_pred             Ccee-CcCCCEEEEEe---CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971          423 FPSF-SPKGDRIAFVE---FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD  495 (721)
Q Consensus       423 ~~~~-SpDG~~la~~~---~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~  495 (721)
                      .+++ .++| .|+++.   ...|++++.++.....+.   ...+..++++|+|+ ++++..      .++.  |+.++.+
T Consensus        81 ~i~~~~~~g-~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~------~~~~--i~~~~~~  150 (286)
T 1q7f_A           81 RVAVVRNSG-DIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR-IIVVEC------KVMR--VIIFDQN  150 (286)
T ss_dssp             EEEEETTTT-EEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSC-EEEEET------TTTE--EEEECTT
T ss_pred             EEEEEcCCC-eEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCC-EEEEEC------CCCE--EEEEcCC
Confidence            3567 4666 455553   678999996554444443   23567889999997 555431      2334  4444444


Q ss_pred             CCCCccceEEccc--CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC--CcCceeeEEccCCCE
Q 004971          496 DVDGVSAVRRLTT--NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG--PWSDTMCNWSPDGEW  571 (721)
Q Consensus       496 ~~~~~~~~~~l~~--~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~--~~~~~~~~~SpDG~~  571 (721)
                      +.    ....+..  .......++++|||+ |+++...  ...|++||.++..   +..+...  ......++++|||+ 
T Consensus       151 g~----~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~--~~~i~~~~~~g~~---~~~~~~~g~~~~p~~i~~d~~G~-  219 (286)
T 1q7f_A          151 GN----VLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR--AHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGE-  219 (286)
T ss_dssp             SC----EEEEEECTTTCSSEEEEEECSSSE-EEEEEGG--GTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCC-
T ss_pred             CC----EEEEeCCCCccCCcEEEEECCCCC-EEEEECC--CCEEEEEcCCCCE---EEEEccCCccCCCcEEEECCCCC-
Confidence            42    3344432  223466789999998 5554432  5689999986543   4444332  13457899999997 


Q ss_pred             EEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971          572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS  626 (721)
Q Consensus       572 l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~  626 (721)
                      |+++....     ...|++|+.++.....+...........++++|||+ |++++
T Consensus       220 l~v~~~~~-----~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs~  268 (286)
T 1q7f_A          220 ILIADNHN-----NFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGS-VVLAS  268 (286)
T ss_dssp             EEEEECSS-----SCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTE-EEEEE
T ss_pred             EEEEeCCC-----CEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCc-EEEEC
Confidence            44444321     127999997665554444321222345789999997 44444

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.86  E-value=1.5e-07  Score=96.77  Aligned_cols=241  Identities=12%  Similarity=0.052  Sum_probs=139.4

Q ss_pred             cccCceeecCCCCEEEEEEecCCC--------------------CeeeEEEEECCCCceEEeecccCCCCcccCcEEcCC
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTS--------------------SYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPD  380 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~--------------------~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spd  380 (721)
                      .+..++++| +|+.++. ......                    ....|++||.++++...... .........++++|+
T Consensus        25 ~v~~va~d~-~G~l~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           25 QVSGVALDS-KNNLVIF-HRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-KNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CEEEEEECT-TCCEEEE-ECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-TTTCSSEEEEEECTT
T ss_pred             CceEEEECC-CCCEEEE-eCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-CCccCCceEEEECCC
Confidence            356788999 9975543 222110                    11359999999887543221 112234567899999


Q ss_pred             CCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecc------------cCCCCceeCc-CCCEEEEEe--CCcEEEEE
Q 004971          381 SSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFR------------FDGSFPSFSP-KGDRIAFVE--FPGVYVVN  445 (721)
Q Consensus       381 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------~~~~~~~~Sp-DG~~la~~~--~~~l~v~d  445 (721)
                      |+ |+++. ...       ..++..+..+....+....            .....++++| +|+.++...  ...|++++
T Consensus       102 g~-l~v~d-~~~-------~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~  172 (329)
T 3fvz_A          102 GN-YWVTD-VAL-------HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS  172 (329)
T ss_dssp             SC-EEEEE-TTT-------TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC
T ss_pred             CC-EEEEE-CCC-------CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc
Confidence            98 54433 332       3466666554421222111            0123478999 665444432  57899999


Q ss_pred             CCCCceEEEe-ec-----------CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc--CCC
Q 004971          446 SDGSNRRQVY-FK-----------NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT--NGK  511 (721)
Q Consensus       446 ~~~g~~~~l~-~~-----------~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~--~~~  511 (721)
                      .++.....+. .+           .+..++++|++..|+++..      .+..+.+|+.+. +.    ....+..  ...
T Consensus       173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~------~~~~I~~~~~~~-G~----~~~~~~~~~~~~  241 (329)
T 3fvz_A          173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR------ENGRIQCFKTDT-KE----FVREIKHASFGR  241 (329)
T ss_dssp             TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET------TTTEEEEEETTT-CC----EEEEECCTTTTT
T ss_pred             CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC------CCCEEEEEECCC-Cc----EEEEEeccccCC
Confidence            6655444443 11           2667999999778887752      345555555431 32    3444432  223


Q ss_pred             CCcceEEccCCCEEEEEEee-----CCceeEEEEECCCCcccceEECc---CCCcCceeeEEccCCCEEEEEEccCCCCC
Q 004971          512 NNAFPSVSPDGKWIVFRSTR-----TGYKNLYIMDAEGGEGYGLHRLT---EGPWSDTMCNWSPDGEWIAFASDRDNPGS  583 (721)
Q Consensus       512 ~~~~~~~SpDg~~l~~~s~~-----~g~~~l~~~d~~~g~~~~~~~l~---~~~~~~~~~~~SpDG~~l~~~~~~~~~~~  583 (721)
                      ....++|+| | .++.....     .....+++|+..+++.  +..+.   ........++++||| .|+++....    
T Consensus       242 ~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~--~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~----  312 (329)
T 3fvz_A          242 NVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEI--IDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHT----  312 (329)
T ss_dssp             CEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCE--EEEECCSSSCCSSEEEEEECTTS-EEEEEESSS----
T ss_pred             CcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeE--EEEEcCCCCccCCeeEEEECCCC-CEEEEECCC----
Confidence            456678999 3 33333221     1245899999988874  44432   223345789999999 676666543    


Q ss_pred             CceeEEEEecCC
Q 004971          584 GSFEMYLIHPNG  595 (721)
Q Consensus       584 ~~~~i~~~d~~~  595 (721)
                        ..|++|++++
T Consensus       313 --~~I~~~~~~~  322 (329)
T 3fvz_A          313 --NTVWKFTLTE  322 (329)
T ss_dssp             --CCEEEEEEEE
T ss_pred             --CEEEEEeCCc
Confidence              3799988765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.84  E-value=8e-07  Score=93.41  Aligned_cols=201  Identities=11%  Similarity=0.097  Sum_probs=138.0

Q ss_pred             CCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      ..++|++.+..|+++.  ...|+.++++++..+.+.   ......+++.+.+..|+++..        ..-.|+.++.++
T Consensus       119 ~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~--------~~~~I~~~~~dg  190 (386)
T 3v65_B          119 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDS--------GTSRIEVANLDG  190 (386)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEET--------TTTEEEECBTTS
T ss_pred             EEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcC--------CCCeEEEEeCCC
Confidence            3478888888888884  678999999988766654   234567899999999998853        223566666665


Q ss_pred             CCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEE
Q 004971          497 VDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAF  574 (721)
Q Consensus       497 ~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~  574 (721)
                      .    ..+.+.... .....+++.|++.+|+++.... ...|++++.++..   ...+. ........++|+|+++.|++
T Consensus       191 ~----~~~~l~~~~l~~P~giavdp~~g~ly~td~~~-~~~I~r~~~dG~~---~~~~~~~~~~~PnGlavd~~~~~lY~  262 (386)
T 3v65_B          191 A----HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-TPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYW  262 (386)
T ss_dssp             C----SCEEEECSSCSCEEEEEEETTTTEEEEEECSS-SCEEEEEETTSCS---CEEEECSSCSCEEEEEEEGGGTEEEE
T ss_pred             C----ceEEeecCCCCCCcEEEEEcCCCeEEEeccCC-CCEEEEEeCCCCC---cEEEEECCCCCeeeEEEeCCCCEEEE
Confidence            4    333333322 4567789999999999886532 3689999998655   33332 23333578999999999999


Q ss_pred             EEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEE-c
Q 004971          575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK-L  653 (721)
Q Consensus       575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-~  653 (721)
                      +....      ..|+++++++...+.+... .......+++  ++..|+++....+                .|++++ .
T Consensus       263 aD~~~------~~I~~~d~dG~~~~~~~~~-~~~~P~giav--~~~~ly~td~~~~----------------~V~~~~~~  317 (386)
T 3v65_B          263 VDAKH------HVIERANLDGSHRKAVISQ-GLPHPFAITV--FEDSLYWTDWHTK----------------SINSANKF  317 (386)
T ss_dssp             EETTT------TEEEEECTTSCSCEEEECS-SCSSEEEEEE--ETTEEEEEETTTT----------------EEEEEETT
T ss_pred             EECCC------CEEEEEeCCCCeeEEEEEC-CCCCceEEEE--ECCEEEEeeCCCC----------------eEEEEECC
Confidence            98653      3899999988766655532 2233455666  4567888765443                499999 4


Q ss_pred             CCCCeEEecc
Q 004971          654 DGSDLKRLTQ  663 (721)
Q Consensus       654 ~~~~~~~lt~  663 (721)
                      +|+..+.|..
T Consensus       318 ~G~~~~~i~~  327 (386)
T 3v65_B          318 TGKNQEIIRN  327 (386)
T ss_dssp             TCCSCEEEEC
T ss_pred             CCcceEEEcc
Confidence            5555666654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.83  E-value=8.5e-07  Score=90.47  Aligned_cols=197  Identities=13%  Similarity=0.092  Sum_probs=132.2

Q ss_pred             EEEEEeCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc-c
Q 004971          432 RIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT-T  508 (721)
Q Consensus       432 ~la~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~-~  508 (721)
                      .|+|.....|..+++++++...+.  ...+..++|++++..|+++..        ..-.|+.++.++.........+. .
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~--------~~~~I~~~~~~g~~~~~~~~~~~~~   74 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL--------SQRMICSTQLDRAHGVSSYDTVISR   74 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEET--------TTTEEEEEEC--------CEEEECS
T ss_pred             EEEEECCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEEC--------CCCcEEEEECCCCCCCcccEEEEeC
Confidence            577777889999999988765554  345678999999999999852        23355666554410000222222 2


Q ss_pred             CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-CCcCceeeEEccCCCEEEEEEccCCCCCCcee
Q 004971          509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFE  587 (721)
Q Consensus       509 ~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~  587 (721)
                      .......+++.+.++.|++....  ...|.++++++..   .+.+.. .......++++|++..|+++....     ...
T Consensus        75 ~~~~p~glavd~~~~~ly~~d~~--~~~I~~~~~~g~~---~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~-----~~~  144 (316)
T 1ijq_A           75 DIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----PAK  144 (316)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSSS---EEEEEECTTCCEEEEEEETTTTEEEEEECSS-----SCE
T ss_pred             CCCCcCEEEEeecCCeEEEEECC--CCEEEEEeCCCCc---eEEEEECCCCCcceEEeCCCCCEEEEEccCC-----CCe
Confidence            22456778999888889888653  5689999998655   333322 223457889999989998887531     238


Q ss_pred             EEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          588 MYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       588 i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      |+++++++...+.+... .-.....++++|+++.||++.....                .|+++|++|+..+.+..
T Consensus       145 I~~~~~dG~~~~~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~----------------~I~~~d~dg~~~~~~~~  203 (316)
T 1ijq_A          145 IKKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLH----------------SISSIDVNGGNRKTILE  203 (316)
T ss_dssp             EEEEETTSCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTT----------------EEEEEETTSCSCEEEEE
T ss_pred             EEEEcCCCCCeEEEEEC-CCCCceEEEEeccCCEEEEEECCCC----------------eEEEEecCCCceEEEee
Confidence            99999987665555432 2344568899999999999876543                49999998876665543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.83  E-value=1.4e-06  Score=90.27  Aligned_cols=201  Identities=11%  Similarity=0.094  Sum_probs=138.8

Q ss_pred             CCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      ..++|++.+..|+++.  ...|+.++++++..+.+.   ......+++.+.+..|+++..        ..-.|+.++.++
T Consensus        76 ~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~--------~~~~I~~~~~dG  147 (349)
T 3v64_C           76 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDS--------GTSRIEVANLDG  147 (349)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET--------TTTEEEEEETTS
T ss_pred             EEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcC--------CCCeEEEEcCCC
Confidence            3468888888898884  678999999988766654   234567899998999998853        233666677766


Q ss_pred             CCCccceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-CCcCceeeEEccCCCEEEE
Q 004971          497 VDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-GPWSDTMCNWSPDGEWIAF  574 (721)
Q Consensus       497 ~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~~~~~~~~~~SpDG~~l~~  574 (721)
                      .    ..+.+.. .......+++.|++.+|+++.... ...|++++.++..   ...+.. .......++++|+++.|++
T Consensus       148 ~----~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~-~~~I~r~~~dG~~---~~~~~~~~~~~PnGla~d~~~~~lY~  219 (349)
T 3v64_C          148 A----HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-TPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYW  219 (349)
T ss_dssp             C----SCEEEECTTCSCEEEEEEETTTTEEEEEECSS-SCEEEEEETTSCS---CEESCCSSCSCEEEEEEETTTTEEEE
T ss_pred             C----ceEEEEeCCCCCcceEEEecCcCeEEEeccCC-CCEEEEEeCCCCC---cEEEEECCCCCcceEEEeCCCCEEEE
Confidence            4    3344433 224567789999999999887532 3789999998655   344432 3334578999999999999


Q ss_pred             EEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEE-c
Q 004971          575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK-L  653 (721)
Q Consensus       575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-~  653 (721)
                      +....      ..|+++++++...+.+... .......+++  ++..|+++....+                .|+.++ .
T Consensus       220 aD~~~------~~I~~~~~dG~~~~~~~~~-~~~~P~giav--~~~~ly~td~~~~----------------~V~~~~~~  274 (349)
T 3v64_C          220 VDAKH------HVIERANLDGSHRKAVISQ-GLPHPFAITV--FEDSLYWTDWHTK----------------SINSANKF  274 (349)
T ss_dssp             EETTT------TEEEEEETTSCSCEEEECS-SCSSEEEEEE--ETTEEEEEETTTT----------------EEEEEETT
T ss_pred             EECCC------CEEEEEeCCCCceEEEEeC-CCCCceEEEE--ECCEEEEecCCCC----------------eEEEEEcc
Confidence            98653      3899999988766655432 2234455666  4567887765543                499998 4


Q ss_pred             CCCCeEEecc
Q 004971          654 DGSDLKRLTQ  663 (721)
Q Consensus       654 ~~~~~~~lt~  663 (721)
                      +|+..+.|..
T Consensus       275 ~G~~~~~i~~  284 (349)
T 3v64_C          275 TGKNQEIIRN  284 (349)
T ss_dssp             TCCSCEEEEC
T ss_pred             CCCccEEecc
Confidence            5555666654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.82  E-value=4.1e-06  Score=85.35  Aligned_cols=218  Identities=10%  Similarity=0.058  Sum_probs=139.2

Q ss_pred             EEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC---CCcceecc---cCCC
Q 004971          349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP---LPDISLFR---FDGS  422 (721)
Q Consensus       349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~---~~~~  422 (721)
                      |+.+|+++++...+..   .......++|+++++.|+++....        ..|+..++.+.   ........   ....
T Consensus        12 I~~i~~~~~~~~~~~~---~~~~p~g~~~d~~~~~ly~~D~~~--------~~I~~~~~~g~~~~~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A           12 VRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQ--------RMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (316)
T ss_dssp             EEEEETTSCCCEEEEC---SCSSEEEEEEETTTTEEEEEETTT--------TEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEECCCcceEehhc---CCCceEEEEEEeCCCEEEEEECCC--------CcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence            8999999876544432   134456789999999998865433        35676666541   11111111   1234


Q ss_pred             CceeCcCCCEEEEEe--CCcEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971          423 FPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV  497 (721)
Q Consensus       423 ~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~  497 (721)
                      .+++.+.+..|+++.  ...|.++++++...+.+..   .....+++.|++.+|+++..       .....|+.++.++.
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~-------~~~~~I~~~~~dG~  153 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW-------GTPAKIKKGGLNGV  153 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC-------SSSCEEEEEETTSC
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEcc-------CCCCeEEEEcCCCC
Confidence            567877777888873  6789999998876665542   35678899999999998752       12357888887764


Q ss_pred             CCccceEEcccC-CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEE
Q 004971          498 DGVSAVRRLTTN-GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFAS  576 (721)
Q Consensus       498 ~~~~~~~~l~~~-~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~  576 (721)
                          ..+.+... -.....++++|++++|+++...  ...|+++|.++...+.+............+++  |+..|+++.
T Consensus       154 ----~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~--~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav--~~~~ly~~d  225 (316)
T 1ijq_A          154 ----DIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTD  225 (316)
T ss_dssp             ----CEEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEE
T ss_pred             ----CeEEEEECCCCCceEEEEeccCCEEEEEECC--CCeEEEEecCCCceEEEeecCCccCCcEEEEE--ECCEEEEEE
Confidence                44444332 2456678999999999998753  56899999986553222221111122345666  456788877


Q ss_pred             ccCCCCCCceeEEEEecCCCce
Q 004971          577 DRDNPGSGSFEMYLIHPNGTGL  598 (721)
Q Consensus       577 ~~~~~~~~~~~i~~~d~~~~~~  598 (721)
                      ...      ..|++++..+|+.
T Consensus       226 ~~~------~~V~~~~~~~g~~  241 (316)
T 1ijq_A          226 IIN------EAIFSANRLTGSD  241 (316)
T ss_dssp             TTT------TEEEEEETTTCCC
T ss_pred             CCC------CeEEEEeCCCCcc
Confidence            543      3799999766553

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.81  E-value=4e-07  Score=91.42  Aligned_cols=214  Identities=14%  Similarity=0.086  Sum_probs=125.4

Q ss_pred             CCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEee--------cCceeeEEc-CCCCeEEEEecCCCCCCCCCcEEEEE
Q 004971          422 SFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVYF--------KNAFSTVWD-PVREAVVYTSGGPEFASESSEVDIIS  491 (721)
Q Consensus       422 ~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~~--------~~~~~~~~s-pdg~~la~~~~~~~~~~~~~~~~i~~  491 (721)
                      ..++++++|+.++.. ....|.+|+.++.....+..        ..+..++++ ++| .|+++..       .....|+.
T Consensus        33 ~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~-------~~~~~i~~  104 (286)
T 1q7f_A           33 SGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTER-------SPTHQIQI  104 (286)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEEC-------GGGCEEEE
T ss_pred             ceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCC-eEEEEcC-------CCCCEEEE
Confidence            346889999744333 36789999988554444431        245577885 555 5555541       11234555


Q ss_pred             EEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc--CCCcCceeeEEccC
Q 004971          492 INVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT--EGPWSDTMCNWSPD  568 (721)
Q Consensus       492 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~--~~~~~~~~~~~SpD  568 (721)
                      ++.++.    ....+.... .....++++|||+ |++....  ...|++||.++..   +..+.  ........++++||
T Consensus       105 ~d~~g~----~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~--~~~i~~~~~~g~~---~~~~~~~~~~~~p~~i~~~~~  174 (286)
T 1q7f_A          105 YNQYGQ----FVRKFGATILQHPRGVTVDNKGR-IIVVECK--VMRVIIFDQNGNV---LHKFGCSKHLEFPNGVVVNDK  174 (286)
T ss_dssp             ECTTSC----EEEEECTTTCSCEEEEEECTTSC-EEEEETT--TTEEEEECTTSCE---EEEEECTTTCSSEEEEEECSS
T ss_pred             ECCCCc----EEEEecCccCCCceEEEEeCCCC-EEEEECC--CCEEEEEcCCCCE---EEEeCCCCccCCcEEEEECCC
Confidence            554442    344443322 3456789999998 5444421  4689999976433   33332  22234578999999


Q ss_pred             CCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccE
Q 004971          569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI  648 (721)
Q Consensus       569 G~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  648 (721)
                      |+ |+++....      ..|++||.++.....+...+.......+++++||+.++ +....+               ..|
T Consensus       175 g~-l~v~~~~~------~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v-~~~~~~---------------~~i  231 (286)
T 1q7f_A          175 QE-IFISDNRA------HCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILI-ADNHNN---------------FNL  231 (286)
T ss_dssp             SE-EEEEEGGG------TEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEE-EECSSS---------------CEE
T ss_pred             CC-EEEEECCC------CEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEE-EeCCCC---------------EEE
Confidence            97 55554321      28999998665444443211123456789999997443 443321               139


Q ss_pred             EEEEcCCCCeEEeccCCCC--CCCceecCC
Q 004971          649 FKIKLDGSDLKRLTQNSFE--DGTPAWGPR  676 (721)
Q Consensus       649 ~~~d~~~~~~~~lt~~~~~--~~~~~~sp~  676 (721)
                      ++||.++...+.+..+...  ....+++|+
T Consensus       232 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~  261 (286)
T 1q7f_A          232 TIFTQDGQLISALESKVKHAQCFDVALMDD  261 (286)
T ss_dssp             EEECTTSCEEEEEEESSCCSCEEEEEEETT
T ss_pred             EEECCCCCEEEEEcccCCCCcceeEEECCC
Confidence            9999887766666653322  234667775

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.81  E-value=4.3e-07  Score=95.51  Aligned_cols=194  Identities=14%  Similarity=0.115  Sum_probs=138.7

Q ss_pred             CEEEEEeCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc
Q 004971          431 DRIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT  508 (721)
Q Consensus       431 ~~la~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~  508 (721)
                      .+|++.....|+.++++++....+.  ...+..++|.+.+..|+++..        ..-.|++++.++.    ..+.+..
T Consensus        88 ~~l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~--------~~~~I~r~~~~g~----~~~~~~~  155 (386)
T 3v65_B           88 PVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV--------TLDRILRANLNGS----NVEEVVS  155 (386)
T ss_dssp             CEEEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEET--------TTTEEEEEETTSC----CEEEEEC
T ss_pred             ceeEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeC--------CCCcEEEEecCCC----CcEEEEe
Confidence            4677777788999999988766655  345678999999999998752        2346778887764    4444433


Q ss_pred             -CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCce
Q 004971          509 -NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF  586 (721)
Q Consensus       509 -~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~  586 (721)
                       .......+++.+.+..|++....  ...|+++++++..   .+.+. ........++++|++..|+++....     ..
T Consensus       156 ~~~~~p~glavd~~~g~lY~~d~~--~~~I~~~~~dg~~---~~~l~~~~l~~P~giavdp~~g~ly~td~~~-----~~  225 (386)
T 3v65_B          156 TGLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGAH---RKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-----TP  225 (386)
T ss_dssp             SSCSCCCCEEEETTTTEEEEEETT--TTEEEECBTTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEECSS-----SC
T ss_pred             CCCCCccEEEEEeCCCeEEEEcCC--CCeEEEEeCCCCc---eEEeecCCCCCCcEEEEEcCCCeEEEeccCC-----CC
Confidence             22456778999999999988753  4589999998655   23332 2323457889999999999887542     24


Q ss_pred             eEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       587 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      .|+++++++...+.+... .-.....++|+|+++.||++.....                .|++++++++..+.+..
T Consensus       226 ~I~r~~~dG~~~~~~~~~-~~~~PnGlavd~~~~~lY~aD~~~~----------------~I~~~d~dG~~~~~~~~  285 (386)
T 3v65_B          226 RIEASSMDGSGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHH----------------VIERANLDGSHRKAVIS  285 (386)
T ss_dssp             EEEEEETTSCSCEEEECS-SCSCEEEEEEEGGGTEEEEEETTTT----------------EEEEECTTSCSCEEEEC
T ss_pred             EEEEEeCCCCCcEEEEEC-CCCCeeeEEEeCCCCEEEEEECCCC----------------EEEEEeCCCCeeEEEEE
Confidence            899999988766665432 2234578999999999999876543                49999998876665543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.81  E-value=7e-07  Score=92.42  Aligned_cols=193  Identities=14%  Similarity=0.116  Sum_probs=137.4

Q ss_pred             CEEEEEeCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc
Q 004971          431 DRIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT  508 (721)
Q Consensus       431 ~~la~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~  508 (721)
                      ..|+|.....|+.+++++.....+.  ...+..++|++....|+++..        ..-.|++++.++.    ..+.+..
T Consensus        45 ~~ll~~~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~--------~~~~I~r~~~~g~----~~~~~~~  112 (349)
T 3v64_C           45 PVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV--------TLDRILRANLNGS----NVEEVVS  112 (349)
T ss_dssp             CEEEEECBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEET--------TTTEEEEEETTSC----SCEEEEC
T ss_pred             ceeEeecccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEec--------cCCceEEEecCCC----CceEEEe
Confidence            3677777788999999887766554  345678899999999998752        2346777777764    3344333


Q ss_pred             -CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCce
Q 004971          509 -NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF  586 (721)
Q Consensus       509 -~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~  586 (721)
                       .......+++.+.+..|++....  ...|+++++++..   .+.+. ........++++|++..|+++....     ..
T Consensus       113 ~~~~~p~glavd~~~g~ly~~d~~--~~~I~~~~~dG~~---~~~l~~~~l~~P~~iavdp~~g~ly~td~~~-----~~  182 (349)
T 3v64_C          113 TGLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGAH---RKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-----TP  182 (349)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSCS---CEEEECTTCSCEEEEEEETTTTEEEEEECSS-----SC
T ss_pred             CCCCCccEEEEecCCCeEEEEcCC--CCeEEEEcCCCCc---eEEEEeCCCCCcceEEEecCcCeEEEeccCC-----CC
Confidence             22456778999989999988753  4589999998665   23332 2323457889999999999887642     24


Q ss_pred             eEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEec
Q 004971          587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT  662 (721)
Q Consensus       587 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt  662 (721)
                      .|+++++++...+.+... .-.....++++|+++.||++.....                .|++++++|+..+.+.
T Consensus       183 ~I~r~~~dG~~~~~~~~~-~~~~PnGla~d~~~~~lY~aD~~~~----------------~I~~~~~dG~~~~~~~  241 (349)
T 3v64_C          183 RIEASSMDGSGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHH----------------VIERANLDGSHRKAVI  241 (349)
T ss_dssp             EEEEEETTSCSCEESCCS-SCSCEEEEEEETTTTEEEEEETTTT----------------EEEEEETTSCSCEEEE
T ss_pred             EEEEEeCCCCCcEEEEEC-CCCCcceEEEeCCCCEEEEEECCCC----------------EEEEEeCCCCceEEEE
Confidence            899999988766655432 2234577999999999999876543                4999999887666554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.77  E-value=3.5e-06  Score=84.78  Aligned_cols=261  Identities=12%  Similarity=0.053  Sum_probs=147.6

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      ....+.+++ +|+ |++....    ...|.++|.. ++...+.. .........++++++|+ |++... ..       .
T Consensus        21 ~p~~i~~d~-~g~-l~v~~~~----~~~v~~~~~~-~~~~~~~~-~~~~~~~~~i~~~~~g~-l~v~~~-~~-------~   83 (300)
T 2qc5_A           21 GPYGITSSE-DGK-VWFTQHK----ANKISSLDQS-GRIKEFEV-PTPDAKVMCLIVSSLGD-IWFTEN-GA-------N   83 (300)
T ss_dssp             CEEEEEECT-TSC-EEEEETT----TTEEEEECTT-SCEEEEEC-SSTTCCEEEEEECTTSC-EEEEET-TT-------T
T ss_pred             CcceeeECC-CCC-EEEEcCC----CCeEEEECCC-CceEEEEC-CCCCCcceeEEECCCCC-EEEEec-CC-------C
Confidence            446778888 887 4443322    2348999988 66544321 11223456778888886 444332 22       2


Q ss_pred             eeEEEeccCCCCcceec--ccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeEEE
Q 004971          401 QLLLENIKSPLPDISLF--RFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVY  473 (721)
Q Consensus       401 ~l~~~~~~~~~~~~~~~--~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~  473 (721)
                      .++..+..+....+...  ......+++.++|+.++... ...|+.++.+ ++...+.    ...+..+.++++|+ |++
T Consensus        84 ~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v  161 (300)
T 2qc5_A           84 KIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWF  161 (300)
T ss_dssp             EEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEE
T ss_pred             eEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEE
Confidence            35555544221111110  11223467788886433332 5689999988 5554443    23466788999998 555


Q ss_pred             EecCCCCCCCCCcEEEEEEEccCCCCccceEEccc--CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE
Q 004971          474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT--NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH  551 (721)
Q Consensus       474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~  551 (721)
                      +..        ....|+.++..+     ....+..  .......++++++|+ |++....  ...|++++. +++.. ..
T Consensus       162 ~~~--------~~~~i~~~~~~g-----~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~--~~~i~~~~~-~g~~~-~~  223 (300)
T 2qc5_A          162 TEN--------QNNSIGRITNTG-----KLEEYPLPTNAAAPVGITSGNDGA-LWFVEIM--GNKIGRITT-TGEIS-EY  223 (300)
T ss_dssp             EET--------TTTEEEEECTTC-----CEEEEECSSTTCCEEEEEECTTSS-EEEEETT--TTEEEEECT-TCCEE-EE
T ss_pred             Eec--------CCCeEEEECCCC-----cEEEeeCCCCCCCcceEEECCCCC-EEEEccC--CCEEEEEcC-CCcEE-EE
Confidence            542        223455665533     3333322  223456788999986 5555431  457999998 45521 11


Q ss_pred             ECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEe
Q 004971          552 RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD  627 (721)
Q Consensus       552 ~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~  627 (721)
                      .+.........++++++|+ |+++....      ..|++++.+ ++...............++++++|+ |++...
T Consensus       224 ~~~~~~~~~~~i~~d~~g~-l~v~~~~~------~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~  290 (300)
T 2qc5_A          224 DIPTPNARPHAITAGKNSE-IWFTEWGA------NQIGRITND-NTIQEYQLQTENAEPHGITFGKDGS-VWFALK  290 (300)
T ss_dssp             ECSSTTCCEEEEEECSTTC-EEEEETTT------TEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSC-EEEECS
T ss_pred             ECCCCCCCceEEEECCCCC-EEEeccCC------CeEEEECCC-CcEEEEECCccCCccceeEeCCCCC-EEEEcc
Confidence            1222333456789999998 55555331      279999984 5544443221234577889999998 444443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.75  E-value=5.6e-07  Score=89.32  Aligned_cols=210  Identities=10%  Similarity=0.041  Sum_probs=126.2

Q ss_pred             CCCceeCcCCCEEEE-E--eCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971          421 GSFPSFSPKGDRIAF-V--EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV  494 (721)
Q Consensus       421 ~~~~~~SpDG~~la~-~--~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~  494 (721)
                      ...++++++|+ |++ .  ..+.|++++..++....+.   ...+..++++++|+ |+++.       .  .-.|+.++.
T Consensus        26 p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~-------~--~~~i~~~d~   94 (270)
T 1rwi_B           26 PSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTD-------F--NNRVVTLAA   94 (270)
T ss_dssp             EEEEEECTTCC-EEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEE-------T--TTEEEEECT
T ss_pred             ccceEECCCCC-EEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEc-------C--CCEEEEEeC
Confidence            34468899997 555 4  3578999988766554433   23567899999998 65554       1  224566666


Q ss_pred             cCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEE
Q 004971          495 DDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWI  572 (721)
Q Consensus       495 ~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l  572 (721)
                      ++.    ....+.... .....++++|+|+ |++....  ...|++++..+..   ..... ........++++|||+ |
T Consensus        95 ~~~----~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~--~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~-l  163 (270)
T 1rwi_B           95 GSN----NQTVLPFDGLNYPEGLAVDTQGA-VYVADRG--NNRVVKLAAGSKT---QTVLPFTGLNDPDGVAVDNSGN-V  163 (270)
T ss_dssp             TCS----CCEECCCCSCSSEEEEEECTTCC-EEEEEGG--GTEEEEECTTCCS---CEECCCCSCCSCCCEEECTTCC-E
T ss_pred             CCc----eEeeeecCCcCCCcceEECCCCC-EEEEECC--CCEEEEEECCCce---eEeeccccCCCceeEEEeCCCC-E
Confidence            553    333343222 3566789999998 5555432  4579999765544   22222 2222456799999998 5


Q ss_pred             EEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEE
Q 004971          573 AFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK  652 (721)
Q Consensus       573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d  652 (721)
                      +++....      ..|++++.+++........ .......++++++| .|+++....+                .|++++
T Consensus       164 ~v~~~~~------~~i~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~g-~l~v~~~~~~----------------~v~~~~  219 (270)
T 1rwi_B          164 YVTDTDN------NRVVKLEAESNNQVVLPFT-DITAPWGIAVDEAG-TVYVTEHNTN----------------QVVKLL  219 (270)
T ss_dssp             EEEEGGG------TEEEEECTTTCCEEECCCS-SCCSEEEEEECTTC-CEEEEETTTS----------------CEEEEC
T ss_pred             EEEECCC------CEEEEEecCCCceEeeccc-CCCCceEEEECCCC-CEEEEECCCC----------------cEEEEc
Confidence            5555432      2799999988765443321 22445678999999 4555554332                499999


Q ss_pred             cCCCCeEEeccCC-CCCCCceecCC
Q 004971          653 LDGSDLKRLTQNS-FEDGTPAWGPR  676 (721)
Q Consensus       653 ~~~~~~~~lt~~~-~~~~~~~~sp~  676 (721)
                      .++.....+.... ......+++|+
T Consensus       220 ~~~~~~~~~~~~~~~~p~~i~~~~~  244 (270)
T 1rwi_B          220 AGSTTSTVLPFTGLNTPLAVAVDSD  244 (270)
T ss_dssp             TTCSCCEECCCCSCSCEEEEEECTT
T ss_pred             CCCCcceeeccCCCCCceeEEECCC
Confidence            9887655543222 22345667664

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.72  E-value=8.8e-07  Score=86.58  Aligned_cols=191  Identities=13%  Similarity=0.015  Sum_probs=124.8

Q ss_pred             CceeCcCCCEEEEEe----CCcEEEEECCCCceEE-Ee-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          423 FPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQ-VY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       423 ~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~-l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      .+.|++|| +|+...    .+.|.++|+.+++... +. ........+..+|++|+....      .++.  ++.++..+
T Consensus        25 Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~------~~~~--v~viD~~t   95 (266)
T 2iwa_A           25 GLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVW------LKNI--GFIYDRRT   95 (266)
T ss_dssp             EEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEET------TCSE--EEEEETTT
T ss_pred             cEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEe------cCCE--EEEEECCC
Confidence            47889986 666653    4789999999988543 33 334444456667889888862      3344  44555544


Q ss_pred             CCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC--CCc---CceeeEEccCCCE
Q 004971          497 VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE--GPW---SDTMCNWSPDGEW  571 (721)
Q Consensus       497 ~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~--~~~---~~~~~~~SpDG~~  571 (721)
                      .   .....+...  ......+++||++|+++.   +...|+++|.++.+.  +..+.-  ...   ..+.+.|. || .
T Consensus        96 ~---~v~~~i~~g--~~~g~glt~Dg~~l~vs~---gs~~l~viD~~t~~v--~~~I~Vg~~~~p~~~~nele~~-dg-~  163 (266)
T 2iwa_A           96 L---SNIKNFTHQ--MKDGWGLATDGKILYGSD---GTSILYEIDPHTFKL--IKKHNVKYNGHRVIRLNELEYI-NG-E  163 (266)
T ss_dssp             T---EEEEEEECC--SSSCCEEEECSSSEEEEC---SSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEEE-TT-E
T ss_pred             C---cEEEEEECC--CCCeEEEEECCCEEEEEC---CCCeEEEEECCCCcE--EEEEEECCCCcccccceeEEEE-CC-E
Confidence            2   234444433  123456889999988654   267999999998775  444432  211   23567787 76 5


Q ss_pred             EEEEEccCCCCCCceeEEEEecCCCceEEeeecC------------CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCC
Q 004971          572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG------------SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTP  639 (721)
Q Consensus       572 l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~------------~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~  639 (721)
                      |+......      ..|.++|+++++........            .......++|+|+|++|+++.....         
T Consensus       164 lyvn~~~~------~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~---------  228 (266)
T 2iwa_A          164 VWANIWQT------DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP---------  228 (266)
T ss_dssp             EEEEETTS------SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS---------
T ss_pred             EEEecCCC------CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC---------
Confidence            66555432      38999999999876655421            0023468999999999888776653         


Q ss_pred             CCCCCCccEEEEEcCCC
Q 004971          640 HQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       640 ~~~~~~~~l~~~d~~~~  656 (721)
                             .||.+++...
T Consensus       229 -------~v~~i~l~~~  238 (266)
T 2iwa_A          229 -------KLFEIKLHLV  238 (266)
T ss_dssp             -------EEEEEEEEEC
T ss_pred             -------eEEEEEEecc
Confidence                   5999987654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.71  E-value=2e-06  Score=87.49  Aligned_cols=195  Identities=10%  Similarity=0.080  Sum_probs=133.2

Q ss_pred             EEEEEeCCcEEEEECCCCc--eEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc
Q 004971          432 RIAFVEFPGVYVVNSDGSN--RRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT  507 (721)
Q Consensus       432 ~la~~~~~~l~v~d~~~g~--~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~  507 (721)
                      .|+|.....|..+++++..  ...+.  ......++|.+.+..|+++..        ..-.|++++.++..  .....+.
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~--------~~~~I~r~~~~g~~--~~~~~~~   75 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDV--------SEEAIKRTEFNKTE--SVQNVVV   75 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEET--------TTTEEEEEETTSSS--CCCEEEE
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEEC--------CCCcEEEEEccCCC--ceEEEEc
Confidence            5777777889999998874  22222  335668899998889998852        23456777766530  0122233


Q ss_pred             cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCce
Q 004971          508 TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF  586 (721)
Q Consensus       508 ~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~  586 (721)
                      ..-.....+++.+.+..|++....  ...|.++++++..   .+.+. ........+++.|.+..|+++...     ...
T Consensus        76 ~~l~~p~glavd~~~g~ly~~d~~--~~~I~~~~~dG~~---~~~l~~~~~~~P~giavdp~~g~ly~td~~-----~~~  145 (318)
T 3sov_A           76 SGLLSPDGLACDWLGEKLYWTDSE--TNRIEVSNLDGSL---RKVLFWQELDQPRAIALDPSSGFMYWTDWG-----EVP  145 (318)
T ss_dssp             ECCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSCS---CEEEECSSCSSEEEEEEEGGGTEEEEEECS-----SSC
T ss_pred             CCCCCccEEEEEcCCCeEEEEECC--CCEEEEEECCCCc---EEEEEeCCCCCccEEEEeCCCCEEEEEecC-----CCC
Confidence            333456678999888889888653  4689999998655   33332 333345788999998889988743     124


Q ss_pred             eEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       587 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      .|+++++++...+.+... .-.....++++|+++.||++.....                .|+++|++|+..+.+..
T Consensus       146 ~I~r~~~dG~~~~~~~~~-~l~~Pnglavd~~~~~lY~aD~~~~----------------~I~~~d~dG~~~~~~~~  205 (318)
T 3sov_A          146 KIERAGMDGSSRFIIINS-EIYWPNGLTLDYEEQKLYWADAKLN----------------FIHKSNLDGTNRQAVVK  205 (318)
T ss_dssp             EEEEEETTSCSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTT----------------EEEEEETTSCSCEEEEC
T ss_pred             EEEEEEcCCCCeEEEEEC-CCCCccEEEEeccCCEEEEEECCCC----------------EEEEEcCCCCceEEEec
Confidence            899999988766555432 2234577999999999999876543                59999999877666553

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.70  E-value=3.3e-06  Score=84.20  Aligned_cols=209  Identities=10%  Similarity=0.077  Sum_probs=125.7

Q ss_pred             CCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971          421 GSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV  497 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~  497 (721)
                      ...+.++|||+.++ .....|+.+|.++.....+..   ..+....+.+||+.++..+.        ....++.++.++.
T Consensus        39 ~~~~~~~pdG~ilv-s~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~--------~~~~v~~vd~~Gk  109 (276)
T 3no2_A           39 CNSVAATKAGEILF-SYSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCG--------HPSTILEVNMKGE  109 (276)
T ss_dssp             CCEEEECTTSCEEE-ECBSEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCEEEEEES--------TTEEEEEECTTSC
T ss_pred             CcCeEECCCCCEEE-eCCCCEEEECCCCCEEEEEcCCCCccccccEECCCCCEEEEecC--------CCCEEEEEeCCCC
Confidence            34568899998666 667789999994433444442   24557889999999887651        1456677766553


Q ss_pred             CCccceEEcccCC------CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCE
Q 004971          498 DGVSAVRRLTTNG------KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEW  571 (721)
Q Consensus       498 ~~~~~~~~l~~~~------~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~  571 (721)
                          .+..+....      ......++.+||+.|+....   +..|+.+|.+ |+.  +..+... .........++|+.
T Consensus       110 ----~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~---~~~v~~~d~~-G~~--~w~~~~~-~~~~~~~~~~~g~~  178 (276)
T 3no2_A          110 ----VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA---TSEVREIAPN-GQL--LNSVKLS-GTPFSSAFLDNGDC  178 (276)
T ss_dssp             ----EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT---TTEEEEECTT-SCE--EEEEECS-SCCCEEEECTTSCE
T ss_pred             ----EEEEEeccCCCCcccccccCceECCCCCEEEEecC---CCEEEEECCC-CCE--EEEEECC-CCccceeEcCCCCE
Confidence                333333211      12344678999998876544   6789999998 664  4444332 22345777899997


Q ss_pred             EEEEEccCCCCCCceeEEEEecCCCceEE-eeecCCC----CCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCc
Q 004971          572 IAFASDRDNPGSGSFEMYLIHPNGTGLRK-LIQSGSA----GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYG  646 (721)
Q Consensus       572 l~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~----~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~  646 (721)
                      |+......       .|+.+|.++|+..- +......    .....+...++|..++.........+.       -....
T Consensus       179 ~v~~~~~~-------~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~-------~~~~~  244 (276)
T 3no2_A          179 LVACGDAH-------CFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAG-------KGKHP  244 (276)
T ss_dssp             EEECBTTS-------EEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGG-------GSCCC
T ss_pred             EEEeCCCC-------eEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCcccccc-------ccCCc
Confidence            76655442       79999999776543 3221111    123566778999876654322100000       00013


Q ss_pred             cEEEEEcCCCCeEEecc
Q 004971          647 EIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       647 ~l~~~d~~~~~~~~lt~  663 (721)
                      +++.++.++.-+.++..
T Consensus       245 ~~~~~~~~g~~~W~~~~  261 (276)
T 3no2_A          245 QLVEIDSEGKVVWQLND  261 (276)
T ss_dssp             SEEEECTTSBEEEEECC
T ss_pred             eEEEECCCCCEEEEecC
Confidence            58888776655556554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.70  E-value=2.4e-06  Score=90.13  Aligned_cols=198  Identities=13%  Similarity=0.094  Sum_probs=135.9

Q ss_pred             CEEEEEeCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc
Q 004971          431 DRIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT  508 (721)
Q Consensus       431 ~~la~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~  508 (721)
                      .+|++.....|+.+++++.....+.  ...+..++|++.+..|+++..      ..  -.|+.++.++.........+..
T Consensus        84 ~~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~------~~--~~I~~~~~~g~~~~~~~~~~~~  155 (400)
T 3p5b_L           84 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL------SQ--RMICSTQLDRAHGVSSYDTVIS  155 (400)
T ss_dssp             CEEEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEET------TT--TEEEEEEC------CCCEEEEC
T ss_pred             ceeEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEec------CC--CeEEEEEcccCCCCCcceEEEe
Confidence            3677888899999999988766655  456778999999999999852      22  3456665554100002223332


Q ss_pred             -CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCce
Q 004971          509 -NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF  586 (721)
Q Consensus       509 -~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~  586 (721)
                       .......+++.+.++.|++....  ...|+++++++..   ...+. ........++++|.+..|+++....     ..
T Consensus       156 ~~~~~p~glavD~~~~~lY~~d~~--~~~I~~~~~~g~~---~~~l~~~~~~~P~~iavdp~~g~ly~td~~~-----~~  225 (400)
T 3p5b_L          156 RDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----PA  225 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETT--TTEEEEECTTTCS---EEEEEECSSCCEEEEEEETTTTEEEEEECSS-----SC
T ss_pred             CCCCCcccEEEEecCCceEEEECC--CCeEEEEeCCCCc---eEEEEeCCCCCcceEEEecccCeEEEEeCCC-----CC
Confidence             33456678999888889888753  4589999998765   33333 2223357889999988999887542     23


Q ss_pred             eEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       587 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      .|++.++++...+.+... .-.....++++++++.||++.....                .|+++|++|+..+.+..
T Consensus       226 ~I~~~~~dG~~~~~~~~~-~l~~P~glavd~~~~~lY~aD~~~~----------------~I~~~d~dG~~~~~~~~  285 (400)
T 3p5b_L          226 KIKKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLH----------------SISSIDVNGGNRKTILE  285 (400)
T ss_dssp             CEEEEETTSCSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTT----------------EEEEEETTSCCCEEEEE
T ss_pred             EEEEEeCCCCccEEEEEC-CCCceEEEEEEeCCCEEEEEECCCC----------------EEEEEeCCCCccEEEEe
Confidence            799999998776666532 2245678999999999999876543                49999999887766654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.65  E-value=9.8e-06  Score=82.41  Aligned_cols=226  Identities=8%  Similarity=0.021  Sum_probs=144.4

Q ss_pred             EEEEEEecCCCCeeeEEEEECCCCc--eEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC
Q 004971          334 FIAVATRRPTSSYRHIELFDLVKNK--FIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL  411 (721)
Q Consensus       334 ~la~~~~~~g~~~~~l~l~dl~tg~--~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  411 (721)
                      +|+|+.      ...|+.+++++..  ...+...   ......+.|.+.++.|+++....        ..|+..++.+..
T Consensus         6 ~ll~~~------~~~I~~i~l~~~~~~~~~~~~~---~~~~~~ld~d~~~~~lyw~D~~~--------~~I~r~~~~g~~   68 (318)
T 3sov_A            6 LLLYAN------RRDLRLVDATNGKENATIVVGG---LEDAAAVDFVFSHGLIYWSDVSE--------EAIKRTEFNKTE   68 (318)
T ss_dssp             EEEEEC------EEEEEEEETTCTTSCCEEEEEE---EEEEEEEEEEGGGTEEEEEETTT--------TEEEEEETTSSS
T ss_pred             EEEEEc------cCeEEEEECCCCceEEEEEecC---CCccEEEEEEeCCCEEEEEECCC--------CcEEEEEccCCC
Confidence            566643      2349999998763  2222111   12344678999888998865433        356777665542


Q ss_pred             Ccceecc---cCCCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCC
Q 004971          412 PDISLFR---FDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASE  483 (721)
Q Consensus       412 ~~~~~~~---~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~  483 (721)
                      .......   .....+++.+.+..|+++.  ...|.++++++...+.+.   ......+++.|.+.+|+++..       
T Consensus        69 ~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~-------  141 (318)
T 3sov_A           69 SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW-------  141 (318)
T ss_dssp             CCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEEC-------
T ss_pred             ceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEec-------
Confidence            2111111   1234578887777888883  678999999987766654   235678899999889988752       


Q ss_pred             CCcEEEEEEEccCCCCccceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-CCcCce
Q 004971          484 SSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-GPWSDT  561 (721)
Q Consensus       484 ~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~~~~~~  561 (721)
                      .....|++++.++.    ..+.+.. .-.....++|+|++++|+++...  ...|+++|.++...   +.+.. ......
T Consensus       142 ~~~~~I~r~~~dG~----~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~--~~~I~~~d~dG~~~---~~~~~~~~~~P~  212 (318)
T 3sov_A          142 GEVPKIERAGMDGS----SRFIIINSEIYWPNGLTLDYEEQKLYWADAK--LNFIHKSNLDGTNR---QAVVKGSLPHPF  212 (318)
T ss_dssp             SSSCEEEEEETTSC----SCEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSC---EEEECSCCSCEE
T ss_pred             CCCCEEEEEEcCCC----CeEEEEECCCCCccEEEEeccCCEEEEEECC--CCEEEEEcCCCCce---EEEecCCCCCce
Confidence            13467888888764    4444433 22456779999999999998753  56899999986552   33322 222234


Q ss_pred             eeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE
Q 004971          562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK  600 (721)
Q Consensus       562 ~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~  600 (721)
                      .+++  |+..|+++....      ..|++++..+|+..+
T Consensus       213 glav--~~~~lywtd~~~------~~V~~~~~~~G~~~~  243 (318)
T 3sov_A          213 ALTL--FEDILYWTDWST------HSILACNKYTGEGLR  243 (318)
T ss_dssp             EEEE--ETTEEEEEETTT------TEEEEEETTTCCSCE
T ss_pred             EEEE--eCCEEEEEecCC------CeEEEEECCCCCceE
Confidence            5555  456788886543      489999986665433

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.64  E-value=6.2e-07  Score=92.80  Aligned_cols=262  Identities=8%  Similarity=-0.021  Sum_probs=139.6

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc----cCCCCcccCcEEcCCCCEEEEEEeeCCCCCC
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF----VSPKTHHLNPFISPDSSRVGYHKCRGGSTRE  396 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~----~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~  396 (721)
                      ....++++| +|+.++. ..+......+|+.++  +++.......    ..+-.....++++++|+ |+++......   
T Consensus        18 ~p~~va~~~-~g~~~v~-~~~~~~~~~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~---   89 (343)
T 2qe8_A           18 APGNITLTP-DGRLFLS-LHQFYQPEMQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQS---   89 (343)
T ss_dssp             CEEEEEECT-TSCEEEE-ECGGGCCSCSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHH---
T ss_pred             CcceEEECC-CCCEEEE-eCCCCCCceEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCc---
Confidence            456788999 9975433 222111114577777  5654432211    11223456789999975 5554432100   


Q ss_pred             CCcceeEEEeccCCC-Ccceecc-------cCCCCceeCcCCCEEEEEe-----CCcEEEEECCCCceEEEeec--Cc--
Q 004971          397 DGNNQLLLENIKSPL-PDISLFR-------FDGSFPSFSPKGDRIAFVE-----FPGVYVVNSDGSNRRQVYFK--NA--  459 (721)
Q Consensus       397 ~~~~~l~~~~~~~~~-~~~~~~~-------~~~~~~~~SpDG~~la~~~-----~~~l~v~d~~~g~~~~l~~~--~~--  459 (721)
                      ....+++..++.++. .......       .....+++++++..+++..     ...|+++|+.+++...+..+  ..  
T Consensus        90 ~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~  169 (343)
T 2qe8_A           90 KSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAP  169 (343)
T ss_dssp             TSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSC
T ss_pred             CCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccc
Confidence            000357777765442 1111111       1124468888766776662     46799999988876554321  10  


Q ss_pred             eeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEE
Q 004971          460 FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI  539 (721)
Q Consensus       460 ~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~  539 (721)
                      ....++++|+.+++...       ++.                ...+.   .....++|||||+.|++....  ...||.
T Consensus       170 ~~~~~~~~g~~~~~~~~-------~g~----------------~~~~~---~~~~gia~s~dg~~ly~~~~~--~~~l~~  221 (343)
T 2qe8_A          170 EDIDLVIDGVPVQIGQP-------DGT----------------VIRPH---LGVNGIVLDAENEWLYLSPMH--STSMYR  221 (343)
T ss_dssp             CSCCCEETTEECBEECT-------TSC----------------EECCC---CCEEEEEECTTSCEEEEEESS--CSEEEE
T ss_pred             cccceeECCEEEEeccC-------CCc----------------eecee---cccceeEeccCCCEEEEEeCC--CCeEEE
Confidence            01344455554443321       111                11111   123568999999999988753  348999


Q ss_pred             EECC---CCcc---c---ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCc
Q 004971          540 MDAE---GGEG---Y---GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRA  610 (721)
Q Consensus       540 ~d~~---~g~~---~---~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~  610 (721)
                      ++..   .+..   +   .+..+ ........+++++||+ |+++....      ..|++||..+++...+.........
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~-l~va~~~~------~~V~~~d~~~G~~~~~~~~~~~~~p  293 (343)
T 2qe8_A          222 IKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHN-IYVGDLAH------SAIGVITSADRAYKLLVTDEKLSWT  293 (343)
T ss_dssp             EEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCC-EEEEEGGG------TEEEEEETTTTEEEEEEECGGGSCE
T ss_pred             EEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCC-EEEEccCC------CeEEEEECCCCCEEEEEECCceecC
Confidence            8753   1110   0   01111 1112335789999986 55555432      3899999855665555432112345


Q ss_pred             CCeEECCCCCEEEEEE
Q 004971          611 NHPYFSPDGKSIVFTS  626 (721)
Q Consensus       611 ~~~~~SpDG~~l~~~~  626 (721)
                      ..++|++||+.++..+
T Consensus       294 ~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          294 DSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             EEEEECTTSCEEEEEC
T ss_pred             CeeEECCCCcEEEEeC
Confidence            7889999987544433

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.63  E-value=9.4e-06  Score=85.57  Aligned_cols=203  Identities=13%  Similarity=0.102  Sum_probs=133.7

Q ss_pred             CCceeCcCCCEEEEEe--CCcEEEEECCCC----ceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971          422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGS----NRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI  492 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g----~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~  492 (721)
                      ..++|++.+..|+++.  ...|+.+++++.    ....+.   ......+++.+.++.|+++..        ..-.|+.+
T Consensus       115 ~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~--------~~~~I~~~  186 (400)
T 3p5b_L          115 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS--------VLGTVSVA  186 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEET--------TTTEEEEE
T ss_pred             eEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEEC--------CCCeEEEE
Confidence            4578998888898884  678999999873    333443   234567888888889988752        23356677


Q ss_pred             EccCCCCccceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC-cCCCcCceeeEEccCCC
Q 004971          493 NVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL-TEGPWSDTMCNWSPDGE  570 (721)
Q Consensus       493 ~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l-~~~~~~~~~~~~SpDG~  570 (721)
                      +.++.    ..+.+.. .......+++.|.+.+|+++... ....|+++++++..   ...+ .........++++|+++
T Consensus       187 ~~~g~----~~~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG~~---~~~~~~~~l~~P~glavd~~~~  258 (400)
T 3p5b_L          187 DTKGV----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSG  258 (400)
T ss_dssp             CTTTC----SEEEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTSCS---CEEEECSSCSCEEEEEEETTTT
T ss_pred             eCCCC----ceEEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCCCc---cEEEEECCCCceEEEEEEeCCC
Confidence            77664    4444443 22456778999999999988742 13589999998665   3333 22323457899999999


Q ss_pred             EEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEE
Q 004971          571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFK  650 (721)
Q Consensus       571 ~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  650 (721)
                      .|+++....      ..|+++|+++...+.+... .........++.++..|+++.....                .|++
T Consensus       259 ~lY~aD~~~------~~I~~~d~dG~~~~~~~~~-~~~l~~P~gl~v~~~~lywtd~~~~----------------~V~~  315 (400)
T 3p5b_L          259 RLYWVDSKL------HSISSIDVNGGNRKTILED-EKRLAHPFSLAVFEDKVFWTDIINE----------------AIFS  315 (400)
T ss_dssp             EEEEEETTT------TEEEEEETTSCCCEEEEEC-SSTTSSEEEEEEETTEEEEEESSSC----------------SEEE
T ss_pred             EEEEEECCC------CEEEEEeCCCCccEEEEeC-CCCCCCCEEEEEeCCEEEEecCCCC----------------eEEE
Confidence            999997653      3899999988776666542 1111222344447778988875443                4999


Q ss_pred             EEc-CCCCeEEecc
Q 004971          651 IKL-DGSDLKRLTQ  663 (721)
Q Consensus       651 ~d~-~~~~~~~lt~  663 (721)
                      +|. +|+..+.|..
T Consensus       316 ~~~~~G~~~~~i~~  329 (400)
T 3p5b_L          316 ANRLTGSDVNLLAE  329 (400)
T ss_dssp             EESSSCCCCEEEEC
T ss_pred             EEcCCCCceEEEec
Confidence            995 4445555543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.58  E-value=1.4e-05  Score=80.22  Aligned_cols=234  Identities=11%  Similarity=0.088  Sum_probs=132.2

Q ss_pred             cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee--cccCCCCceeCcCCCEEEEEe-CCcEEEEECC
Q 004971          371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL--FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSD  447 (721)
Q Consensus       371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~  447 (721)
                      .+..++++++|+ |++.....        ..++..+..+.......  .......++++++|+.++... .+.|++++.+
T Consensus        16 ~~~~i~~d~~g~-l~v~~~~~--------~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           16 GPYGITVSDKGK-VWITQHKA--------NMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             CEEEEEECTTSC-EEEEETTT--------TEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CccceEECCCCC-EEEEecCC--------CcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            455678888887 34433212        23555554411111110  011233467889987444433 5679999987


Q ss_pred             CCceEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc--cCCCCCcceEEccC
Q 004971          448 GSNRRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT--TNGKNNAFPSVSPD  521 (721)
Q Consensus       448 ~g~~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~SpD  521 (721)
                       ++...+.    ...+..+.++++|+ |+++..      ..+  .|+.++..+     ....+.  ........++++++
T Consensus        87 -g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~------~~~--~i~~~d~~g-----~~~~~~~~~~~~~~~~i~~~~~  151 (299)
T 2z2n_A           87 -GIIKEYTLPNPDSAPYGITEGPNGD-IWFTEM------NGN--RIGRITDDG-----KIREYELPNKGSYPSFITLGSD  151 (299)
T ss_dssp             -SCEEEEECSSTTCCEEEEEECTTSC-EEEEET------TTT--EEEEECTTC-----CEEEEECSSTTCCEEEEEECTT
T ss_pred             -CcEEEEeCCCcCCCceeeEECCCCC-EEEEec------CCc--eEEEECCCC-----CEEEecCCCCCCCCceEEEcCC
Confidence             4444443    22466788999886 444431      123  455555533     333322  22235567889999


Q ss_pred             CCEEEEEEeeCCceeEEEEECCCCcccceEE--CcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971          522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR--LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR  599 (721)
Q Consensus       522 g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~--l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~  599 (721)
                      |+ |++...  ....|+++|. +++   +..  +.........++++++|+ |+++....      ..|+++|. +++..
T Consensus       152 g~-l~v~~~--~~~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~------~~i~~~~~-~g~~~  216 (299)
T 2z2n_A          152 NA-LWFTEN--QNNAIGRITE-SGD---ITEFKIPTPASGPVGITKGNDDA-LWFVEIIG------NKIGRITT-SGEIT  216 (299)
T ss_dssp             SC-EEEEET--TTTEEEEECT-TCC---EEEEECSSTTCCEEEEEECTTSS-EEEEETTT------TEEEEECT-TCCEE
T ss_pred             CC-EEEEeC--CCCEEEEEcC-CCc---EEEeeCCCCCCcceeEEECCCCC-EEEEccCC------ceEEEECC-CCcEE
Confidence            96 444442  1468999999 666   333  222233456789999998 55555322      27999999 66655


Q ss_pred             EeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEe
Q 004971          600 KLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL  661 (721)
Q Consensus       600 ~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l  661 (721)
                      .............++++++|+ |+++....+                .|+++|.+ ++.+.+
T Consensus       217 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~----------------~i~~~d~~-g~~~~~  260 (299)
T 2z2n_A          217 EFKIPTPNARPHAITAGAGID-LWFTEWGAN----------------KIGRLTSN-NIIEEY  260 (299)
T ss_dssp             EEECSSTTCCEEEEEECSTTC-EEEEETTTT----------------EEEEEETT-TEEEEE
T ss_pred             EEECCCCCCCceeEEECCCCC-EEEeccCCc----------------eEEEECCC-CceEEE
Confidence            443221234566789999998 444443322                49999984 444444

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.55  E-value=2.2e-05  Score=89.53  Aligned_cols=221  Identities=10%  Similarity=0.092  Sum_probs=142.7

Q ss_pred             eEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC---Ccceecc---cCC
Q 004971          348 HIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL---PDISLFR---FDG  421 (721)
Q Consensus       348 ~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~---~~~  421 (721)
                      .|+.+++...+...+...   ......++|++.+.+|+++....        ..|+..++.+..   .......   ...
T Consensus       405 ~Ir~i~l~~~~~~~l~~~---~~~~~gl~~d~~~~~lY~sD~~~--------~~I~~~~l~g~~~~~~~~~vi~~~l~~P  473 (791)
T 3m0c_C          405 EVRKMTLDRSEYTSLIPN---LRNVVALDTEVASNRIYWSDLSQ--------RMICSTQLDRAHGVSSYDTVISRDIQAP  473 (791)
T ss_dssp             SEEEECTTSCCCEEEECS---CSSEEEEEEETTTTEEEEEETTT--------TEEEEEEC--------CEEEECSSCSCC
T ss_pred             ceeEeeccCCcceeeecC---CCceEEEeecccCCeeEEeeccc--------eeEEEEeccCCCCCcceeEEEecCCCCc
Confidence            388888887665554321   33455788998888888865433        346666655421   1111111   223


Q ss_pred             CCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      ..+++.+.++.|+++.  ...|+++++++...+.+..   .....+++.|.+.+||++..       .....|+.+++++
T Consensus       474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~-------g~~~~I~~~~~dG  546 (791)
T 3m0c_C          474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW-------GTPAKIKKGGLNG  546 (791)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC-------SSSCEEEEEETTS
T ss_pred             ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecC-------CCCCeEEEEecCC
Confidence            4578888888898884  6789999999887766652   34678999999999999852       1225688888877


Q ss_pred             CCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC-CcCceeeEEccCCCEEEE
Q 004971          497 VDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG-PWSDTMCNWSPDGEWIAF  574 (721)
Q Consensus       497 ~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~-~~~~~~~~~SpDG~~l~~  574 (721)
                      .    ..+.+.... .....+++++++++|+++...  ...|+++++++...   ..+... ......++++.++.+||+
T Consensus       547 ~----~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~--~~~I~~~d~dG~~~---~~v~~~~~~l~~P~glav~~~~lYw  617 (791)
T 3m0c_C          547 V----DIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVFEDKVFW  617 (791)
T ss_dssp             C----CEEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSC---EEEEECTTTTSSEEEEEEETTEEEE
T ss_pred             C----ceEEEEeCCCCCceEEEEecCCCeEEEEeCC--CCcEEEEecCCCce---EEEecCCCccCCCCEEEEeCCEEEE
Confidence            5    444444433 467778999999999998643  56899999987663   333222 111123344456778988


Q ss_pred             EEccCCCCCCceeEEEEecCCCceEEe
Q 004971          575 ASDRDNPGSGSFEMYLIHPNGTGLRKL  601 (721)
Q Consensus       575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l  601 (721)
                      +....      ..|++++..+|+.+.+
T Consensus       618 tD~~~------~~I~~~dk~tG~~~~~  638 (791)
T 3m0c_C          618 TDIIN------EAIFSANRLTGSDVNL  638 (791)
T ss_dssp             EETTT------TEEEEEETTTCCCCEE
T ss_pred             EECCC------CEEEEEeCCCCcceEE
Confidence            88653      3899999766654433

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.52  E-value=1.3e-05  Score=91.30  Aligned_cols=197  Identities=14%  Similarity=0.091  Sum_probs=135.5

Q ss_pred             EEEEEeCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc-cceEEccc
Q 004971          432 RIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV-SAVRRLTT  508 (721)
Q Consensus       432 ~la~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~l~~  508 (721)
                      .|++.....|+.+++++.....+.  ...+..++|.+...+|+++..        ..-.|+.++.++.... .....+..
T Consensus       397 ~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~--------~~~~I~~~~l~g~~~~~~~~~vi~~  468 (791)
T 3m0c_C          397 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL--------SQRMICSTQLDRAHGVSSYDTVISR  468 (791)
T ss_dssp             EEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEET--------TTTEEEEEEC--------CEEEECS
T ss_pred             ccccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeec--------cceeEEEEeccCCCCCcceeEEEec
Confidence            577777888999999887766665  345678899998889988752        2234666665542000 12223332


Q ss_pred             CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCcee
Q 004971          509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFE  587 (721)
Q Consensus       509 ~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~  587 (721)
                      .......+++.+.++.|+++...  ...|+++++++..   .+.+. ........++++|.+.+|+++....     ...
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~--~~~I~v~~ldG~~---~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~-----~~~  538 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----PAK  538 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSSS---EEEEEECTTCCEEEEEEETTTTEEEEEECSS-----SCE
T ss_pred             CCCCcceeeeeecCCcEEEEecC--CCeEEEEeCCCCe---EEEEEeCCCCCcceEEEecCCCCEEEecCCC-----CCe
Confidence            33566789999999999998753  5689999998765   33333 2333357899999988999987542     237


Q ss_pred             EEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          588 MYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       588 i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      |++.++++...+.+... .-.....+++++++..||++.....                .|++++++|+..+.+..
T Consensus       539 I~~~~~dG~~~~~lv~~-~l~~P~GLavD~~~~~LYwaD~~~~----------------~I~~~d~dG~~~~~v~~  597 (791)
T 3m0c_C          539 IKKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLH----------------SISSIDVNGGNRKTILE  597 (791)
T ss_dssp             EEEEETTSCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTT----------------EEEEEETTSCSCEEEEE
T ss_pred             EEEEecCCCceEEEEeC-CCCCceEEEEecCCCeEEEEeCCCC----------------cEEEEecCCCceEEEec
Confidence            99999988776666542 2245677899999999999865442                49999998887776654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.46  E-value=8.9e-05  Score=74.26  Aligned_cols=194  Identities=12%  Similarity=0.065  Sum_probs=114.8

Q ss_pred             CCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          422 SFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      ..++++++|+.++... ...|+++|.+ ++...+.    ...+..++++++|+ ++++..        ....|+.++.++
T Consensus        65 ~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~--------~~~~i~~~~~~g  134 (300)
T 2qc5_A           65 MCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGD-IWFTQL--------NGDRIGKLTADG  134 (300)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTC-EEEEET--------TTTEEEEECTTS
T ss_pred             eeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCC-EEEEcc--------CCCeEEEECCCC
Confidence            3467788886433332 5679999988 5554443    13466788899886 444431        122456666553


Q ss_pred             CCCccceEEc--ccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEE
Q 004971          497 VDGVSAVRRL--TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF  574 (721)
Q Consensus       497 ~~~~~~~~~l--~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~  574 (721)
                           ....+  .........+++.++|+ |++....  ...|+++|. +++... ..+.........++++++|+ |++
T Consensus       135 -----~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~--~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~-l~v  203 (300)
T 2qc5_A          135 -----TIYEYDLPNKGSYPAFITLGSDNA-LWFTENQ--NNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGA-LWF  203 (300)
T ss_dssp             -----CEEEEECSSTTCCEEEEEECTTSS-EEEEETT--TTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSS-EEE
T ss_pred             -----CEEEccCCCCCCCceeEEECCCCC-EEEEecC--CCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCC-EEE
Confidence                 33322  22224566788999998 5555431  457999998 565311 11222223456789999996 555


Q ss_pred             EEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971          575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD  654 (721)
Q Consensus       575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  654 (721)
                      +....      ..|++++. +++...............++++++|+ |+++....+                .|++++.+
T Consensus       204 ~~~~~------~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~----------------~i~~~~~~  259 (300)
T 2qc5_A          204 VEIMG------NKIGRITT-TGEISEYDIPTPNARPHAITAGKNSE-IWFTEWGAN----------------QIGRITND  259 (300)
T ss_dssp             EETTT------TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTT----------------EEEEECTT
T ss_pred             EccCC------CEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCC-EEEeccCCC----------------eEEEECCC
Confidence            55432      27999998 45544443221234456789999998 555443322                49999984


Q ss_pred             CCCeEEe
Q 004971          655 GSDLKRL  661 (721)
Q Consensus       655 ~~~~~~l  661 (721)
                       ++...+
T Consensus       260 -g~~~~~  265 (300)
T 2qc5_A          260 -NTIQEY  265 (300)
T ss_dssp             -SCEEEE
T ss_pred             -CcEEEE
Confidence             444443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.46  E-value=1.1e-05  Score=80.30  Aligned_cols=187  Identities=16%  Similarity=0.163  Sum_probs=116.3

Q ss_pred             CCEEEEE-eCCcEEEEECCCCceEEEe-e---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceE
Q 004971          430 GDRIAFV-EFPGVYVVNSDGSNRRQVY-F---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVR  504 (721)
Q Consensus       430 G~~la~~-~~~~l~v~d~~~g~~~~l~-~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  504 (721)
                      ++.|+.. .+..|+++|.++|+...-. .   ..+..+.++|+|+.++ ..        +.  .|+.++..+.    .+.
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~--------~~--~V~~~d~~G~----~~W   69 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SY--------SK--GAKMITRDGR----ELW   69 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-EC--------BS--EEEEECTTSC----EEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eC--------CC--CEEEECCCCC----EEE
Confidence            3334443 4788999999888754433 2   2477899999998777 32        12  2455555332    444


Q ss_pred             EcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC------CcCceeeEEccCCCEEEEEEc
Q 004971          505 RLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG------PWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       505 ~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~------~~~~~~~~~SpDG~~l~~~~~  577 (721)
                      .+.... .....+.++|||+.|+..+..  ...|+.+|.+ |+.  +..+...      ......+++++||+.|+....
T Consensus        70 ~~~~~~~~~~~~~~~~~dG~~lv~~~~~--~~~v~~vd~~-Gk~--l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~  144 (276)
T 3no2_A           70 NIAAPAGCEMQTARILPDGNALVAWCGH--PSTILEVNMK-GEV--LSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA  144 (276)
T ss_dssp             EEECCTTCEEEEEEECTTSCEEEEEEST--TEEEEEECTT-SCE--EEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT
T ss_pred             EEcCCCCccccccEECCCCCEEEEecCC--CCEEEEEeCC-CCE--EEEEeccCCCCcccccccCceECCCCCEEEEecC
Confidence            444432 244567899999988876531  4578888875 442  3333211      112345678999998876554


Q ss_pred             cCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971          578 RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       578 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  657 (721)
                      +.       .|+.+|.+ |+..--..  ...........++|+.|+..... +                .|+.+|.++|+
T Consensus       145 ~~-------~v~~~d~~-G~~~w~~~--~~~~~~~~~~~~~g~~~v~~~~~-~----------------~v~~~d~~tG~  197 (276)
T 3no2_A          145 TS-------EVREIAPN-GQLLNSVK--LSGTPFSSAFLDNGDCLVACGDA-H----------------CFVQLNLESNR  197 (276)
T ss_dssp             TT-------EEEEECTT-SCEEEEEE--CSSCCCEEEECTTSCEEEECBTT-S----------------EEEEECTTTCC
T ss_pred             CC-------EEEEECCC-CCEEEEEE--CCCCccceeEcCCCCEEEEeCCC-C----------------eEEEEeCcCCc
Confidence            43       89999998 55433332  22345667889999987654332 1                49999999555


Q ss_pred             -eEEecc
Q 004971          658 -LKRLTQ  663 (721)
Q Consensus       658 -~~~lt~  663 (721)
                       +.++..
T Consensus       198 ~~w~~~~  204 (276)
T 3no2_A          198 IVRRVNA  204 (276)
T ss_dssp             EEEEEEG
T ss_pred             EEEEecC
Confidence             456654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.45  E-value=3.4e-05  Score=78.15  Aligned_cols=225  Identities=11%  Similarity=-0.003  Sum_probs=123.0

Q ss_pred             ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe--CC--cEEEEECC
Q 004971          372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE--FP--GVYVVNSD  447 (721)
Q Consensus       372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~--~~--~l~v~d~~  447 (721)
                      ..+++|+++|+ |+++... .       .+++..+..+..............+++++||+ |+++.  ..  .|+.++..
T Consensus        34 pegia~~~~g~-lyv~d~~-~-------~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~  103 (306)
T 2p4o_A           34 LENLASAPDGT-IFVTNHE-V-------GEIVSITPDGNQQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKS  103 (306)
T ss_dssp             EEEEEECTTSC-EEEEETT-T-------TEEEEECTTCCEEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECT
T ss_pred             cceEEECCCCC-EEEEeCC-C-------CeEEEECCCCceEEEEeCCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCC
Confidence            44688999887 5554322 2       34666665543222222222234578899998 55553  22  48888888


Q ss_pred             CCceEEEee--c--CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc-------ccCCCCCcce
Q 004971          448 GSNRRQVYF--K--NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL-------TTNGKNNAFP  516 (721)
Q Consensus       448 ~g~~~~l~~--~--~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l-------~~~~~~~~~~  516 (721)
                      +++.+.+..  .  ....++..++ ..+++..        ...-.||.++..+..  ......       .........-
T Consensus       104 ~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d--------~~~g~i~~~d~~~~~--~~v~~~~~~~~~~~~~~~~~~pn  172 (306)
T 2p4o_A          104 DGTVETLLTLPDAIFLNGITPLSD-TQYLTAD--------SYRGAIWLIDVVQPS--GSIWLEHPMLARSNSESVFPAAN  172 (306)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSS-SEEEEEE--------TTTTEEEEEETTTTE--EEEEEECGGGSCSSTTCCSCSEE
T ss_pred             CCeEEEEEeCCCccccCcccccCC-CcEEEEE--------CCCCeEEEEeCCCCc--EeEEEECCccccccccCCCCcCC
Confidence            888765542  1  1123343443 3444442        123367777765320  011100       0001111111


Q ss_pred             EEccCCCEEEEEEeeCCceeEEEEECCC-CcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971          517 SVSPDGKWIVFRSTRTGYKNLYIMDAEG-GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       517 ~~SpDg~~l~~~s~~~g~~~l~~~d~~~-g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      .++|||++|++....  ..+|++++++. ++......+... .....+++++||+ |+++....      ..|++++.+ 
T Consensus       173 gis~dg~~lyv~d~~--~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~-l~va~~~~------~~V~~~~~~-  241 (306)
T 2p4o_A          173 GLKRFGNFLYVSNTE--KMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGN-LYGATHIY------NSVVRIAPD-  241 (306)
T ss_dssp             EEEEETTEEEEEETT--TTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCC-EEEECBTT------CCEEEECTT-
T ss_pred             CcCcCCCEEEEEeCC--CCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCC-EEEEeCCC------CeEEEECCC-
Confidence            249999999888753  56899999875 432112222211 2236789999996 55554332      379999986 


Q ss_pred             CceEEeeecC-CCCCcCCeEEC---CCCCEEEEEEec
Q 004971          596 TGLRKLIQSG-SAGRANHPYFS---PDGKSIVFTSDY  628 (721)
Q Consensus       596 ~~~~~l~~~~-~~~~~~~~~~S---pDG~~l~~~~~~  628 (721)
                      |+...+.... .......++|+   ||+++|++++..
T Consensus       242 G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          242 RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            4443332111 12346778998   899999988775

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.44  E-value=2.1e-05  Score=81.22  Aligned_cols=260  Identities=11%  Similarity=0.044  Sum_probs=135.7

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCC-------CCCcccCceeecCCCCEEEEEEecC-
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTP-------PGLHAFTPATSPGNNKFIAVATRRP-  342 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~sp~dG~~la~~~~~~-  342 (721)
                      ..++++||++|++.....++...||.+.  .+        +......       +-.....++++| +|+ |++..... 
T Consensus        21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g--------~~~~~p~~~~~~~~~~~~p~gv~~d~-~g~-L~v~D~g~~   88 (343)
T 2qe8_A           21 NITLTPDGRLFLSLHQFYQPEMQVAELT--QD--------GLIPFPPQSGNAIITFDTVLGIKSDG-NGI-VWMLDNGNQ   88 (343)
T ss_dssp             EEEECTTSCEEEEECGGGCCSCSEEEEE--TT--------EEEESCCCCSSCCCCCSCEEEEEECS-SSE-EEEEECHHH
T ss_pred             eEEECCCCCEEEEeCCCCCCceEEEEEC--CC--------CeecCCCcccCcccceeEeeEEEEcC-CCc-EEEEcCCCC
Confidence            3478899998875322112325666554  21        2222211       123456788999 885 55543220 


Q ss_pred             CCCeeeEEEEECCCCceEEeeccc----CCCCcccCcEEcCCCCEEEEEEee--CCCCCCCCcceeEEEeccCCCCccee
Q 004971          343 TSSYRHIELFDLVKNKFIELTRFV----SPKTHHLNPFISPDSSRVGYHKCR--GGSTREDGNNQLLLENIKSPLPDISL  416 (721)
Q Consensus       343 g~~~~~l~l~dl~tg~~~~l~~~~----~~~~~~~~~~~Spdg~~l~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~  416 (721)
                      ......|++||+++++........    .+......+++++++..++++...  ..       ..+++.++.++.. ...
T Consensus        89 ~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~-------~~i~v~d~~~g~~-~r~  160 (343)
T 2qe8_A           89 SKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK-------AALIRVDLQTGLA-ARV  160 (343)
T ss_dssp             HTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG-------CEEEEEETTTCCE-EEE
T ss_pred             cCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC-------CeEEEEECCCCCE-EEE
Confidence            001245999999998743322211    111234568899887777665431  22       4577777654421 111


Q ss_pred             ccc----CCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEE
Q 004971          417 FRF----DGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS  491 (721)
Q Consensus       417 ~~~----~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~  491 (721)
                      ...    ......++++|+.+.+.. ++.+..|           ......++|||||+.|++...        ....||.
T Consensus       161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~-----------~~~~~gia~s~dg~~ly~~~~--------~~~~l~~  221 (343)
T 2qe8_A          161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRP-----------HLGVNGIVLDAENEWLYLSPM--------HSTSMYR  221 (343)
T ss_dssp             CTTCTTTSCCSCCCEETTEECBEECTTSCEECC-----------CCCEEEEEECTTSCEEEEEES--------SCSEEEE
T ss_pred             ecCCCcccccccceeECCEEEEeccCCCceece-----------ecccceeEeccCCCEEEEEeC--------CCCeEEE
Confidence            110    010134455554433321 2222111           123467999999999998862        2237788


Q ss_pred             EEccC---C-CCcc----ceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC--CcCce
Q 004971          492 INVDD---V-DGVS----AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG--PWSDT  561 (721)
Q Consensus       492 ~~~~~---~-~~~~----~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~--~~~~~  561 (721)
                      ++...   . ....    ....+ ........+++++||+ |+++...  ...|++||.++|+   +..+...  .....
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~-l~va~~~--~~~V~~~d~~~G~---~~~~~~~~~~~~p~  294 (343)
T 2qe8_A          222 IKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHN-IYVGDLA--HSAIGVITSADRA---YKLLVTDEKLSWTD  294 (343)
T ss_dssp             EEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCC-EEEEEGG--GTEEEEEETTTTE---EEEEEECGGGSCEE
T ss_pred             EEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCC-EEEEccC--CCeEEEEECCCCC---EEEEEECCceecCC
Confidence            77531   0 0000    01111 1122456789999986 4444432  5689999995566   3333222  22346


Q ss_pred             eeEEccCCCEEEEEEc
Q 004971          562 MCNWSPDGEWIAFASD  577 (721)
Q Consensus       562 ~~~~SpDG~~l~~~~~  577 (721)
                      .++|++||+ |+++..
T Consensus       295 ~va~~~~g~-l~v~~~  309 (343)
T 2qe8_A          295 SFNFGSDGY-LYFDCN  309 (343)
T ss_dssp             EEEECTTSC-EEEEEC
T ss_pred             eeEECCCCc-EEEEeC
Confidence            889999987 444444

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.43  E-value=0.0065  Score=70.22  Aligned_cols=273  Identities=10%  Similarity=0.060  Sum_probs=143.2

Q ss_pred             ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC-----CCCcccCcEEcCCCCEEEEEEeeCCCCCC
Q 004971          322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS-----PKTHHLNPFISPDSSRVGYHKCRGGSTRE  396 (721)
Q Consensus       322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~-----~~~~~~~~~~Spdg~~l~~~~~~~~~~~~  396 (721)
                      +..+...+ +|. |++.+..      .|.++|..+++...+.....     ....+..+...++|. |++....++    
T Consensus       265 i~~i~~d~-~g~-lWigt~~------Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~G----  331 (795)
T 4a2l_A          265 IRSLAMDS-QNR-LWIGTFN------DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGG----  331 (795)
T ss_dssp             EEEEEECT-TSC-EEEEESS------CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSC----
T ss_pred             EEEEEEcC-CCC-EEEEeCC------hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCC----
Confidence            44555666 665 5444322      28999998877555432110     112244455555554 444443333    


Q ss_pred             CCcceeEEEeccCCC-Cccee-------cccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe-----------e
Q 004971          397 DGNNQLLLENIKSPL-PDISL-------FRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY-----------F  456 (721)
Q Consensus       397 ~~~~~l~~~~~~~~~-~~~~~-------~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~-----------~  456 (721)
                           +...+..... .....       .......+...++|. |.+. ..+.|..++..++..+.+.           .
T Consensus       332 -----l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~  405 (795)
T 4a2l_A          332 -----LNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGS  405 (795)
T ss_dssp             -----EEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSC
T ss_pred             -----eEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCC
Confidence                 3333322110 00000       000112233455665 3334 3568999998887765543           1


Q ss_pred             cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC-----CCCCcceEEccCCCEEEEEEee
Q 004971          457 KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN-----GKNNAFPSVSPDGKWIVFRSTR  531 (721)
Q Consensus       457 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~SpDg~~l~~~s~~  531 (721)
                      ..+..+...++|+.|++.+.       .+  -|+.++..++    ..+.+...     ...+..+...++|+ |.+... 
T Consensus       406 ~~v~~i~~d~~g~~lWigt~-------~~--Gl~~~d~~~~----~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-  470 (795)
T 4a2l_A          406 NNIKAVYVDEKKSLVYIGTH-------AG--GLSILHRNSG----QVENFNQRNSQLVNENVYAILPDGEGN-LWLGTL-  470 (795)
T ss_dssp             SCEEEEEEETTTTEEEEEET-------TT--EEEEEETTTC----CEEEECTTTSCCSCSCEEEEEECSSSC-EEEEES-
T ss_pred             ccEEEEEEcCCCCEEEEEeC-------cC--ceeEEeCCCC----cEEEeecCCCCcCCCeeEEEEECCCCC-EEEEec-
Confidence            23445666677774666552       12  2555655443    44444321     12344455666676 444443 


Q ss_pred             CCceeEEEEECCCCcccceEECcCC-------CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee-
Q 004971          532 TGYKNLYIMDAEGGEGYGLHRLTEG-------PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ-  603 (721)
Q Consensus       532 ~g~~~l~~~d~~~g~~~~~~~l~~~-------~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~-  603 (721)
                         ..|+++|..+++   ...+...       ...+..+..+++|+ |.++...        .|++++..+++. .+.. 
T Consensus       471 ---~Gl~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~--------Gl~~~~~~~~~~-~~~~~  534 (795)
T 4a2l_A          471 ---SALVRFNPEQRS---FTTIEKEKDGTPVVSKQITTLFRDSHKR-LWIGGEE--------GLSVFKQEGLDI-QKASI  534 (795)
T ss_dssp             ---SCEEEEETTTTE---EEECCBCTTCCBCCCCCEEEEEECTTCC-EEEEESS--------CEEEEEEETTEE-EECCC
T ss_pred             ---CceeEEeCCCCe---EEEccccccccccCCceEEEEEECCCCC-EEEEeCC--------ceEEEeCCCCeE-EEecC
Confidence               359999998876   4444321       12346677788887 4444443        599999887765 3321 


Q ss_pred             -c---CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          604 -S---GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       604 -~---~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                       .   .....+..+..+++|+.. +.+.. +                 |+++|.++++.+.++.
T Consensus       535 ~~~~~l~~~~i~~i~~d~~g~lW-igT~~-G-----------------l~~~d~~~~~~~~~~~  579 (795)
T 4a2l_A          535 LPVSNVTKLFTNCIYEASNGIIW-VGTRE-G-----------------FYCFNEKDKQIKRYNT  579 (795)
T ss_dssp             SCSCGGGGSCEEEEEECTTSCEE-EEESS-C-----------------EEEEETTTTEEEEECG
T ss_pred             CCCCCCCCCeeEEEEECCCCCEE-EEeCC-C-----------------ceeECCCCCcEEEeCC
Confidence             0   011234566778888843 33332 3                 8888888777666654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.42  E-value=2.9e-06  Score=96.17  Aligned_cols=220  Identities=10%  Similarity=0.070  Sum_probs=136.8

Q ss_pred             eEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccC----C-CCcceec-ccCC
Q 004971          348 HIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS----P-LPDISLF-RFDG  421 (721)
Q Consensus       348 ~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~----~-~~~~~~~-~~~~  421 (721)
                      .|+++++.+.+...+..   .......++|++++..|+++....        ..|+..++.+    . ...+... ....
T Consensus       387 ~I~~id~~~~~~~~~~~---~~~~p~gla~d~~~~~Ly~sD~~~--------~~I~~~~~~g~~~~~~~~~~i~~~~~~P  455 (699)
T 1n7d_A          387 EVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQ--------RMICSTQLDRAHGVSSYDTVISRDIQAP  455 (699)
T ss_dssp             C-CEECTTSCCEECCSC---CCTTCCCCEEETTTTEEEECCTTT--------TSBEEEESCCCCC-CCCCCBCCSCC--C
T ss_pred             ceEEEeCCCCcceeeec---cCcceEEEccccccCeEEEEecCC--------CeEEEEecCCCCCCcceEEEEeCCCCCc
Confidence            48888988776544432   133456789999999988854332        3466666654    1 1111110 1123


Q ss_pred             CCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          422 SFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       422 ~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      ..+++.+.+..|+++  ....|+++++++...+.+.   ......++++|++.+|+++..       .....|+.++.++
T Consensus       456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~-------~~~~~I~~~~~dG  528 (699)
T 1n7d_A          456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDW-------GTPAKIKKGGLNG  528 (699)
T ss_dssp             CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCC-------SSSCCEEBCCSSS
T ss_pred             ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEccc-------CCCCeEEEEeCCC
Confidence            456777667777777  3678999999987766654   235678899999888888642       1124566666655


Q ss_pred             CCCccceEEcc-cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC---CcCceeeEEccCCCEE
Q 004971          497 VDGVSAVRRLT-TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG---PWSDTMCNWSPDGEWI  572 (721)
Q Consensus       497 ~~~~~~~~~l~-~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~---~~~~~~~~~SpDG~~l  572 (721)
                      .    ..+.+. ..-.....++|+|++++|+++...  ...|+++++++...   +.+...   ......+++  |+..|
T Consensus       529 ~----~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~--~~~I~~~d~dG~~~---~~~~~~~~~~~~P~glav--d~~~l  597 (699)
T 1n7d_A          529 V----DIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNR---KTILEDEKRLAHPFSLAV--FEDKV  597 (699)
T ss_dssp             C----CCCEESCSSCSSCCCEEECTTTCCEEEEETT--TTEEEEECSSSSCC---EEECCCSSSCSSCCCCEE--ETTEE
T ss_pred             C----CeeEEEeCCCCCccEEEEeccCCEEEEEecC--CCeEEEEccCCCce---EEEEecCCcCCCceEeEE--ECCEE
Confidence            3    333332 222456789999999999988753  56899999986552   333221   112234454  45688


Q ss_pred             EEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971          573 AFASDRDNPGSGSFEMYLIHPNGTGLRKLI  602 (721)
Q Consensus       573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  602 (721)
                      +++....      ..|++++..+|+..+.+
T Consensus       598 ywtd~~~------~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          598 FWTDIIN------EAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             EEECSTT------TCEEEEETTTEEEEECC
T ss_pred             EEEeCCC------CeEEEEEccCCCceEEe
Confidence            8877543      37999998777655544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.41  E-value=3.8e-05  Score=78.43  Aligned_cols=210  Identities=13%  Similarity=0.070  Sum_probs=113.3

Q ss_pred             CceeCc-CCCEEEEEe-CCcEEEEECCCCceEEEe---e----cCceeeEEcC-CCCeEEEEecCCCCCC---------C
Q 004971          423 FPSFSP-KGDRIAFVE-FPGVYVVNSDGSNRRQVY---F----KNAFSTVWDP-VREAVVYTSGGPEFAS---------E  483 (721)
Q Consensus       423 ~~~~Sp-DG~~la~~~-~~~l~v~d~~~g~~~~l~---~----~~~~~~~~sp-dg~~la~~~~~~~~~~---------~  483 (721)
                      .+++.+ +| .|+++. ...|++++.+++..+.+.   .    .....+++.+ +|+ |+++.....+..         .
T Consensus        84 gi~~~~~~g-~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~  161 (322)
T 2fp8_A           84 DISYNLQNN-QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTS  161 (322)
T ss_dssp             EEEEETTTT-EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHT
T ss_pred             eEEEcCCCC-cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehccc
Confidence            457777 55 566663 456999998877655554   1    1345788999 884 555543211100         1


Q ss_pred             CCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceee
Q 004971          484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC  563 (721)
Q Consensus       484 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~  563 (721)
                      ...-.|+.++.++.    ....+.........++|+|||++|++....  ...|+++++++......+.+....+ ...+
T Consensus       162 ~~~g~v~~~d~~~~----~~~~~~~~~~~p~gia~~~dg~~lyv~d~~--~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi  234 (322)
T 2fp8_A          162 DKTGRLIKYDPSTK----ETTLLLKELHVPGGAEVSADSSFVLVAEFL--SHQIVKYWLEGPKKGTAEVLVKIPN-PGNI  234 (322)
T ss_dssp             CCCEEEEEEETTTT----EEEEEEEEESCCCEEEECTTSSEEEEEEGG--GTEEEEEESSSTTTTCEEEEEECSS-EEEE
T ss_pred             CCCceEEEEeCCCC----EEEEeccCCccCcceEECCCCCEEEEEeCC--CCeEEEEECCCCcCCccceEEeCCC-CCCe
Confidence            23356888887653    444333222345668999999988887653  4689999998632111222211122 4678


Q ss_pred             EEccCCCEEEEEEcc-CCC---CCCceeEEEEecCCCceEEeeecCCC---CCcCCeEECCCCCEEEEEEecCCCcCCCC
Q 004971          564 NWSPDGEWIAFASDR-DNP---GSGSFEMYLIHPNGTGLRKLIQSGSA---GRANHPYFSPDGKSIVFTSDYGGISAEPI  636 (721)
Q Consensus       564 ~~SpDG~~l~~~~~~-~~~---~~~~~~i~~~d~~~~~~~~l~~~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~~~~~  636 (721)
                      +++++|+ |+++... ...   ......|+++|.++.....+... ..   .....+.+  ++..|++++....      
T Consensus       235 ~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~-~g~~~~~~~~~~~--~~g~L~v~~~~~~------  304 (322)
T 2fp8_A          235 KRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLP-PPFAGEHFEQIQE--HDGLLYIGTLFHG------  304 (322)
T ss_dssp             EECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECC-TTTTTSCCCEEEE--ETTEEEEECSSCS------
T ss_pred             EECCCCC-EEEEecCcccccccCCCccEEEEECCCCCEEEEEECC-CCCccccceEEEE--eCCEEEEeecCCC------
Confidence            9999998 4444432 000   00124799999865433333321 11   12334444  3446666654432      


Q ss_pred             CCCCCCCCCccEEEEEcCCCCeEEe
Q 004971          637 STPHQYQPYGEIFKIKLDGSDLKRL  661 (721)
Q Consensus       637 ~~~~~~~~~~~l~~~d~~~~~~~~l  661 (721)
                                .|.+++++.+....+
T Consensus       305 ----------~i~~~~~~~~~~~~~  319 (322)
T 2fp8_A          305 ----------SVGILVYDKKGNSFV  319 (322)
T ss_dssp             ----------EEEEEEC--------
T ss_pred             ----------ceEEEecccccCccc
Confidence                      488888766544333

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.40  E-value=1.2e-05  Score=81.54  Aligned_cols=209  Identities=11%  Similarity=0.094  Sum_probs=119.4

Q ss_pred             CCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971          422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD  498 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~  498 (721)
                      ..++|+++|+ |+++.  .+.|+.++.+++....+. ...+..+++++||+ |+++..      ......|+.++...+ 
T Consensus        35 egia~~~~g~-lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~-l~vad~------~~~~~~v~~~d~~~g-  105 (306)
T 2p4o_A           35 ENLASAPDGT-IFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGD-LVATGW------NADSIPVVSLVKSDG-  105 (306)
T ss_dssp             EEEEECTTSC-EEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSC-EEEEEE------CTTSCEEEEEECTTS-
T ss_pred             ceEEECCCCC-EEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCc-EEEEec------cCCcceEEEEcCCCC-
Confidence            3479999987 66653  678999998875444333 44567889999998 555431      122346777765443 


Q ss_pred             CccceEEcccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE--------C-cCCCcCceeeEEcc
Q 004971          499 GVSAVRRLTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR--------L-TEGPWSDTMCNWSP  567 (721)
Q Consensus       499 ~~~~~~~l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~--------l-~~~~~~~~~~~~Sp  567 (721)
                         ....+....  .....++..+++ .+++...  ....||++|..+++.+ +..        . .........+  +|
T Consensus       106 ---~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~--~~g~i~~~d~~~~~~~-v~~~~~~~~~~~~~~~~~~pngi--s~  176 (306)
T 2p4o_A          106 ---TVETLLTLPDAIFLNGITPLSDT-QYLTADS--YRGAIWLIDVVQPSGS-IWLEHPMLARSNSESVFPAANGL--KR  176 (306)
T ss_dssp             ---CEEEEEECTTCSCEEEEEESSSS-EEEEEET--TTTEEEEEETTTTEEE-EEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred             ---eEEEEEeCCCccccCcccccCCC-cEEEEEC--CCCeEEEEeCCCCcEe-EEEECCccccccccCCCCcCCCc--Cc
Confidence               444433321  122334545544 4554442  2458999998765311 110        0 0111112334  89


Q ss_pred             CCCEEEEEEccCCCCCCceeEEEEecCC-Cce--EEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCC
Q 004971          568 DGEWIAFASDRDNPGSGSFEMYLIHPNG-TGL--RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP  644 (721)
Q Consensus       568 DG~~l~~~~~~~~~~~~~~~i~~~d~~~-~~~--~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~  644 (721)
                      ||+.|+++....      ..|+++++++ ++.  .++...  ......+++++||+ |+++....+              
T Consensus       177 dg~~lyv~d~~~------~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~-l~va~~~~~--------------  233 (306)
T 2p4o_A          177 FGNFLYVSNTEK------MLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGN-LYGATHIYN--------------  233 (306)
T ss_dssp             ETTEEEEEETTT------TEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCC-EEEECBTTC--------------
T ss_pred             CCCEEEEEeCCC------CEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCC-EEEEeCCCC--------------
Confidence            999998888653      3899999875 332  122221  23467899999997 444333322              


Q ss_pred             CccEEEEEcCCCCeEEe---ccCCCCCCCceec
Q 004971          645 YGEIFKIKLDGSDLKRL---TQNSFEDGTPAWG  674 (721)
Q Consensus       645 ~~~l~~~d~~~~~~~~l---t~~~~~~~~~~~s  674 (721)
                        .|++++.++ +...+   .........++|+
T Consensus       234 --~V~~~~~~G-~~~~~~~~~~~~~~p~~~a~~  263 (306)
T 2p4o_A          234 --SVVRIAPDR-STTIIAQAEQGVIGSTAVAFG  263 (306)
T ss_dssp             --CEEEECTTC-CEEEEECGGGTCTTEEEEEEC
T ss_pred             --eEEEECCCC-CEEEEeecccccCCceEEEEe
Confidence              499999874 44332   2222234556776

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.39  E-value=2.6e-06  Score=96.60  Aligned_cols=200  Identities=11%  Similarity=0.023  Sum_probs=127.4

Q ss_pred             CCCceeCcCCCEEEEE--eCCcEEEEECCC----CceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEE
Q 004971          421 GSFPSFSPKGDRIAFV--EFPGVYVVNSDG----SNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS  491 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~--~~~~l~v~d~~~----g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~  491 (721)
                      ...++|++++..|+++  ....|+++++++    .....+.   ...+..+++.+.+..|+++.        ...-.|+.
T Consensus       408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD--------~~~~~I~v  479 (699)
T 1n7d_A          408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD--------SVLGTVSV  479 (699)
T ss_dssp             CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECC--------TTTSCEEE
T ss_pred             eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEe--------ccCCeEEE
Confidence            4567999988888887  367899999986    2322222   12355678887788888763        22334566


Q ss_pred             EEccCCCCccceEEcccC-CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCC
Q 004971          492 INVDDVDGVSAVRRLTTN-GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE  570 (721)
Q Consensus       492 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~  570 (721)
                      ++.++.    ..+.+... ......+++.|++.+|+++... ....|+++++++...  ...+.........++|+|+++
T Consensus       480 ~d~dg~----~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~--~~l~~~~l~~PnGlavd~~~~  552 (699)
T 1n7d_A          480 ADTKGV----KRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDI--YSLVTENIQWPNGITLDLLSG  552 (699)
T ss_dssp             EBSSSC----CEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCC--CEESCSSCSSCCCEEECTTTC
T ss_pred             EecCCC----ceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCe--eEEEeCCCCCccEEEEeccCC
Confidence            666653    44444332 2456778999998888887632 136899999876542  112222223346899999999


Q ss_pred             EEEEEEccCCCCCCceeEEEEecCCCceEEeeecC-CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEE
Q 004971          571 WIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG-SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIF  649 (721)
Q Consensus       571 ~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  649 (721)
                      +|+++....      ..|+++++++...+.+.... .......+++  |+..||++....+                .|+
T Consensus       553 ~LY~aD~~~------~~I~~~d~dG~~~~~~~~~~~~~~~P~glav--d~~~lywtd~~~~----------------~V~  608 (699)
T 1n7d_A          553 RLYWVDSKL------HSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINE----------------AIF  608 (699)
T ss_dssp             CEEEEETTT------TEEEEECSSSSCCEEECCCSSSCSSCCCCEE--ETTEEEEECSTTT----------------CEE
T ss_pred             EEEEEecCC------CeEEEEccCCCceEEEEecCCcCCCceEeEE--ECCEEEEEeCCCC----------------eEE
Confidence            999988653      38999999876655554311 1122334554  5568888774433                499


Q ss_pred             EEEcCCCCeE
Q 004971          650 KIKLDGSDLK  659 (721)
Q Consensus       650 ~~d~~~~~~~  659 (721)
                      +++..+++..
T Consensus       609 ~~d~~~G~~~  618 (699)
T 1n7d_A          609 SANRLTGSDV  618 (699)
T ss_dssp             EEETTTEEEE
T ss_pred             EEEccCCCce
Confidence            9998666543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.30  E-value=2.4e-05  Score=75.46  Aligned_cols=177  Identities=13%  Similarity=0.111  Sum_probs=113.3

Q ss_pred             ceeCcCCCEEEEEe----CCcEEEEECCCCceE-EEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971          424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRR-QVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV  497 (721)
Q Consensus       424 ~~~SpDG~~la~~~----~~~l~v~d~~~g~~~-~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~  497 (721)
                      +.|+ |+ .|+...    .+.|.++|+++++.. .+. ....+.....+++++|+...-      .++  .++.+|.++.
T Consensus        48 L~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw------~~~--~v~v~D~~t~  117 (262)
T 3nol_A           48 FFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTW------KNG--LGFVWNIRNL  117 (262)
T ss_dssp             EEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEES------SSS--EEEEEETTTC
T ss_pred             EEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEe------eCC--EEEEEECccC
Confidence            5677 55 566552    247999999999854 333 444555556778889988762      334  4555555443


Q ss_pred             CCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc--CCCc---CceeeEEccCCCEE
Q 004971          498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT--EGPW---SDTMCNWSPDGEWI  572 (721)
Q Consensus       498 ~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~--~~~~---~~~~~~~SpDG~~l  572 (721)
                         .....+....   ....+++||++|+.+..   ...|+.+|.++.+.  +..+.  .+..   ..+.+.|. || .|
T Consensus       118 ---~~~~ti~~~~---eG~glt~dg~~L~~SdG---s~~i~~iDp~T~~v--~~~I~V~~~g~~~~~lNELe~~-~G-~l  184 (262)
T 3nol_A          118 ---RQVRSFNYDG---EGWGLTHNDQYLIMSDG---TPVLRFLDPESLTP--VRTITVTAHGEELPELNELEWV-DG-EI  184 (262)
T ss_dssp             ---CEEEEEECSS---CCCCEEECSSCEEECCS---SSEEEEECTTTCSE--EEEEECEETTEECCCEEEEEEE-TT-EE
T ss_pred             ---cEEEEEECCC---CceEEecCCCEEEEECC---CCeEEEEcCCCCeE--EEEEEeccCCccccccceeEEE-CC-EE
Confidence               1344444422   33566789998877653   67899999998875  33333  2211   22346776 77 46


Q ss_pred             EEEEccCCCCCCceeEEEEecCCCceEEeeecC-----------CCCCcCCeEECCCCCEEEEEEecC
Q 004971          573 AFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG-----------SAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-----------~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      +......      ..|.++|.++|++.......           .....+.++|+|+++.|+++...-
T Consensus       185 yan~w~~------~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W  246 (262)
T 3nol_A          185 FANVWQT------NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW  246 (262)
T ss_dssp             EEEETTS------SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred             EEEEccC------CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence            6555432      38999999999987665431           012336799999999999888765

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.28  E-value=7e-05  Score=76.37  Aligned_cols=210  Identities=12%  Similarity=0.037  Sum_probs=123.3

Q ss_pred             CCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEee----------------------cCceeeEEcCCCCeEEEEecC
Q 004971          421 GSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVYF----------------------KNAFSTVWDPVREAVVYTSGG  477 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~~----------------------~~~~~~~~spdg~~la~~~~~  477 (721)
                      ...++|+++|+.+++. ..+.|+.++..+++...+..                      ..+..+++.+++..|+++.. 
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~-   99 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC-   99 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET-
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC-
Confidence            4557899998744443 46789999988876654431                      13456788874456666642 


Q ss_pred             CCCCCCCCcEEEEEEEccCCCCccceEEcccC--C---CCCcceEEcc-CCCEEEEEEee---------------CCcee
Q 004971          478 PEFASESSEVDIISINVDDVDGVSAVRRLTTN--G---KNNAFPSVSP-DGKWIVFRSTR---------------TGYKN  536 (721)
Q Consensus       478 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~--~---~~~~~~~~Sp-Dg~~l~~~s~~---------------~g~~~  536 (721)
                            ..  .|+.++..++    ..+.+...  .   .....+++.| +|+ |++....               .....
T Consensus       100 ------~~--~i~~~d~~~g----~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~  166 (322)
T 2fp8_A          100 ------YY--HLSVVGSEGG----HATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGR  166 (322)
T ss_dssp             ------TT--EEEEECTTCE----ECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred             ------CC--CEEEEeCCCC----EEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCce
Confidence                  12  2566665432    33333221  1   2345578999 886 5555432               12367


Q ss_pred             EEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC---ceEEeeecCCCCCcCCe
Q 004971          537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT---GLRKLIQSGSAGRANHP  613 (721)
Q Consensus       537 l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~---~~~~l~~~~~~~~~~~~  613 (721)
                      |+++|.++++   +..+.........++|+|||+.|+++....      ..|+++++++.   ..+.+..  ..+ ...+
T Consensus       167 v~~~d~~~~~---~~~~~~~~~~p~gia~~~dg~~lyv~d~~~------~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi  234 (322)
T 2fp8_A          167 LIKYDPSTKE---TTLLLKELHVPGGAEVSADSSFVLVAEFLS------HQIVKYWLEGPKKGTAEVLVK--IPN-PGNI  234 (322)
T ss_dssp             EEEEETTTTE---EEEEEEEESCCCEEEECTTSSEEEEEEGGG------TEEEEEESSSTTTTCEEEEEE--CSS-EEEE
T ss_pred             EEEEeCCCCE---EEEeccCCccCcceEECCCCCEEEEEeCCC------CeEEEEECCCCcCCccceEEe--CCC-CCCe
Confidence            9999998776   333322222236789999999988887542      38999998763   3333322  223 6678


Q ss_pred             EECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       614 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      +++++|+. +++........ +     .+.....|+++|.++.....+..
T Consensus       235 ~~d~~G~l-~va~~~~~~~~-~-----~~~~~~~v~~~d~~G~~~~~~~~  277 (322)
T 2fp8_A          235 KRNADGHF-WVSSSEELDGN-M-----HGRVDPKGIKFDEFGNILEVIPL  277 (322)
T ss_dssp             EECTTSCE-EEEEEEETTSS-T-----TSCEEEEEEEECTTSCEEEEEEC
T ss_pred             EECCCCCE-EEEecCccccc-c-----cCCCccEEEEECCCCCEEEEEEC
Confidence            99999984 44433210000 0     00001359999987665556654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.25  E-value=0.001  Score=74.99  Aligned_cols=82  Identities=11%  Similarity=0.035  Sum_probs=54.0

Q ss_pred             eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeE
Q 004971          535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY  614 (721)
Q Consensus       535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~  614 (721)
                      ..|+.||+.+|+.  +-++..+ .......++.+|..+++...++       .|+.+|+.+|+..--...+.......+.
T Consensus       457 g~l~A~D~~tG~~--~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg-------~l~a~D~~tG~~lw~~~~~~~~~~~p~~  526 (677)
T 1kb0_A          457 GRLLAWDPVAQKA--AWSVEHV-SPWNGGTLTTAGNVVFQGTADG-------RLVAYHAATGEKLWEAPTGTGVVAAPST  526 (677)
T ss_dssp             EEEEEEETTTTEE--EEEEEES-SSCCCCEEEETTTEEEEECTTS-------EEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred             cEEEEEeCCCCcE--EeecCCC-CCCcCcceEeCCCEEEEECCCC-------cEEEEECCCCceeeeeeCCCCcccCCEE
Confidence            6799999999984  3333222 2224456778888887775553       8999999999876544433333345567


Q ss_pred             ECCCCCEEEEEE
Q 004971          615 FSPDGKSIVFTS  626 (721)
Q Consensus       615 ~SpDG~~l~~~~  626 (721)
                      |++||+.++...
T Consensus       527 y~~~G~~~v~~~  538 (677)
T 1kb0_A          527 YMVDGRQYVSVA  538 (677)
T ss_dssp             EEETTEEEEEEE
T ss_pred             EEeCCEEEEEEe
Confidence            789998655443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.25  E-value=0.00016  Score=76.77  Aligned_cols=152  Identities=8%  Similarity=0.025  Sum_probs=93.9

Q ss_pred             cCceeecCC-CCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcce
Q 004971          323 FTPATSPGN-NKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQ  401 (721)
Q Consensus       323 ~~~~~sp~d-G~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~  401 (721)
                      ..++++| + +..|+++...     ..|+++|+++++...+..   .......++++++|++|+++...+....    ..
T Consensus       140 ~~lavdp-~~~g~Lyv~d~~-----~~I~~id~~~~~v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~~~----~~  206 (430)
T 3tc9_A          140 VWLSFDP-KNHNHLYLVGEQ-----HPTRLIDFEKEYVSTVYS---GLSKVRTICWTHEADSMIITNDQNNNDR----PN  206 (430)
T ss_dssp             CEEEEET-TEEEEEEEEEBT-----EEEEEEETTTTEEEEEEC---CCSCEEEEEECTTSSEEEEEECCSCTTS----EE
T ss_pred             CEEEECC-CCCCeEEEEeCC-----CcEEEEECCCCEEEEEec---CCCCcceEEEeCCCCEEEEEeCCCCccc----ce
Confidence            4678886 5 3456654332     569999998877655543   2445677999999998888765432110    22


Q ss_pred             eEEEeccCCCCccee--cccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeEEE
Q 004971          402 LLLENIKSPLPDISL--FRFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVY  473 (721)
Q Consensus       402 l~~~~~~~~~~~~~~--~~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~  473 (721)
                      ++.....+.......  .......++++|++..|+++  ....|++++.+++....+.    ......++|+|+|++|++
T Consensus       207 v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv  286 (430)
T 3tc9_A          207 NYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYI  286 (430)
T ss_dssp             EEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred             EEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence            333333332221111  11234567899954457776  3678999999987764443    134678999999999988


Q ss_pred             EecCCCCCCCCCcEEEEEEE
Q 004971          474 TSGGPEFASESSEVDIISIN  493 (721)
Q Consensus       474 ~~~~~~~~~~~~~~~i~~~~  493 (721)
                      +..      ....+..+..+
T Consensus       287 ~d~------~~~~I~~~~~d  300 (430)
T 3tc9_A          287 VVV------NQHYILRSDYD  300 (430)
T ss_dssp             EET------TTTEEEEEEEE
T ss_pred             EEC------CCCEEEEEeCC
Confidence            752      34455555554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.18  E-value=7.4e-05  Score=72.91  Aligned_cols=158  Identities=12%  Similarity=0.042  Sum_probs=100.0

Q ss_pred             eeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEE
Q 004971          460 FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYI  539 (721)
Q Consensus       460 ~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~  539 (721)
                      ..+.|+||| +|++++.      ..+...|..++..++   .....+.... ......++++|++|+.....  ...+++
T Consensus        24 ~Gl~~~~dg-~Lyvstg------~~~~s~v~~iD~~tg---~v~~~i~l~~-~~fgeGi~~~g~~lyv~t~~--~~~v~v   90 (266)
T 2iwa_A           24 QGLVYAEND-TLFESTG------LYGRSSVRQVALQTG---KVENIHKMDD-SYFGEGLTLLNEKLYQVVWL--KNIGFI   90 (266)
T ss_dssp             EEEEECSTT-EEEEEEC------STTTCEEEEEETTTC---CEEEEEECCT-TCCEEEEEEETTEEEEEETT--CSEEEE
T ss_pred             ccEEEeCCC-eEEEECC------CCCCCEEEEEECCCC---CEEEEEecCC-CcceEEEEEeCCEEEEEEec--CCEEEE
Confidence            578899985 6777652      234556777777654   1233333222 33334566778899888764  568999


Q ss_pred             EECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCC----CcCCeEE
Q 004971          540 MDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG----RANHPYF  615 (721)
Q Consensus       540 ~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~----~~~~~~~  615 (721)
                      +|.++.+.  +..+..+  ......+++||++|+.+...       ..|+++|.++.+.......+..+    ..+.+.|
T Consensus        91 iD~~t~~v--~~~i~~g--~~~g~glt~Dg~~l~vs~gs-------~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~  159 (266)
T 2iwa_A           91 YDRRTLSN--IKNFTHQ--MKDGWGLATDGKILYGSDGT-------SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY  159 (266)
T ss_dssp             EETTTTEE--EEEEECC--SSSCCEEEECSSSEEEECSS-------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             EECCCCcE--EEEEECC--CCCeEEEEECCCEEEEECCC-------CeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence            99998875  5566543  11345678899998876533       38999999998765544321111    2345667


Q ss_pred             CCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971          616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK  659 (721)
Q Consensus       616 SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  659 (721)
                      . || .|+......+                .|.++|++++++.
T Consensus       160 ~-dg-~lyvn~~~~~----------------~V~vID~~tg~V~  185 (266)
T 2iwa_A          160 I-NG-EVWANIWQTD----------------CIARISAKDGTLL  185 (266)
T ss_dssp             E-TT-EEEEEETTSS----------------EEEEEETTTCCEE
T ss_pred             E-CC-EEEEecCCCC----------------eEEEEECCCCcEE
Confidence            7 76 5554433322                5999999998864

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.17  E-value=9.8e-05  Score=71.14  Aligned_cols=179  Identities=11%  Similarity=-0.032  Sum_probs=112.3

Q ss_pred             ceeCcCCCEEEEEe--CCcEEEEECCCCce-EEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc
Q 004971          424 PSFSPKGDRIAFVE--FPGVYVVNSDGSNR-RQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV  500 (721)
Q Consensus       424 ~~~SpDG~~la~~~--~~~l~v~d~~~g~~-~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~  500 (721)
                      +.++  ++.|+...  .+.|.++|+++++. ..+.....+.....+++++|+...-        ..-.++.+|.++.   
T Consensus        60 L~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw--------~~~~v~V~D~~Tl---  126 (268)
T 3nok_A           60 LVFH--QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTW--------TEGLLFTWSGMPP---  126 (268)
T ss_dssp             EEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEES--------SSCEEEEEETTTT---
T ss_pred             EEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEc--------cCCEEEEEECCcC---
Confidence            4554  45777763  45699999999884 3333334444456678889988762        2345555555443   


Q ss_pred             cceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCc---CceeeEEccCCCEEEEEEc
Q 004971          501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW---SDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       501 ~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~---~~~~~~~SpDG~~l~~~~~  577 (721)
                      .....+....   ....+++||++|+.+..   ...|+.+|.++.+......+.....   ..+.+.|. || .|+....
T Consensus       127 ~~~~ti~~~~---eGwGLt~Dg~~L~vSdG---s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw  198 (268)
T 3nok_A          127 QRERTTRYSG---EGWGLCYWNGKLVRSDG---GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANIW  198 (268)
T ss_dssp             EEEEEEECSS---CCCCEEEETTEEEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEET
T ss_pred             cEEEEEeCCC---ceeEEecCCCEEEEECC---CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEEC
Confidence            2344444322   23456689998887653   7799999999987522222322222   23456777 77 4665554


Q ss_pred             cCCCCCCceeEEEEecCCCceEEeeecC------------CCCCcCCeEECCCCCEEEEEEecC
Q 004971          578 RDNPGSGSFEMYLIHPNGTGLRKLIQSG------------SAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       578 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~------------~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      ..      ..|.++|.++|+........            .....+.++|+|+++.|+++...-
T Consensus       199 ~s------~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~W  256 (268)
T 3nok_A          199 HS------SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLW  256 (268)
T ss_dssp             TC------SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTC
T ss_pred             CC------CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCC
Confidence            32      38999999999877655421            112346799999999998877654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.13  E-value=0.00073  Score=65.48  Aligned_cols=197  Identities=11%  Similarity=0.090  Sum_probs=120.3

Q ss_pred             CCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe-e--cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971          421 GSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY-F--KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD  495 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~-~--~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~  495 (721)
                      ...++|.|++..|+.+  ....|+.+|+.+...+.+. .  .....+++.++++ ++++..      .+..+.++.++.+
T Consensus        29 lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E------~~~~l~~~~v~~~  101 (255)
T 3qqz_A           29 ISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQ-FVISDE------RDYAIYVISLTPN  101 (255)
T ss_dssp             EEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTE-EEEEET------TTTEEEEEEECTT
T ss_pred             cceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCE-EEEEEC------CCCcEEEEEcCCC
Confidence            3457899998888876  3668999999854455554 2  3556788888885 444442      3455556665544


Q ss_pred             CCCCccceEEccc------CCCCCcceEEccCCCEEEEEEeeCCceeEEEEEC--CCCcccceEECc-------CCCcCc
Q 004971          496 DVDGVSAVRRLTT------NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA--EGGEGYGLHRLT-------EGPWSD  560 (721)
Q Consensus       496 ~~~~~~~~~~l~~------~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~--~~g~~~~~~~l~-------~~~~~~  560 (721)
                      +.  .........      .......++|+|++++|+++.++. ...||.++-  .+..   +..+.       ......
T Consensus       102 ~~--i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~---l~i~~~~~~~~~~~~~d~  175 (255)
T 3qqz_A          102 SE--VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNE---LHISKDKALQRQFTLDDV  175 (255)
T ss_dssp             CC--EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSC---CEEEECHHHHHTCCSSCC
T ss_pred             Ce--eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCc---eeeecchhhccccccCCc
Confidence            31  001122211      112345789999999999987753 347888882  2111   22110       112345


Q ss_pred             eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCC--------CCcCCeEECCCCCEEEEEEecCCCc
Q 004971          561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSA--------GRANHPYFSPDGKSIVFTSDYGGIS  632 (721)
Q Consensus       561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~--------~~~~~~~~SpDG~~l~~~~~~~~~~  632 (721)
                      ..+++.|.-.+|++.+...      ..|..+|.++. .+........        .....++|.++|+ ||+.+..+   
T Consensus       176 S~l~~dp~tg~lliLS~~s------~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n---  244 (255)
T 3qqz_A          176 SGAEFNQQKNTLLVLSHES------RALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPN---  244 (255)
T ss_dssp             CEEEEETTTTEEEEEETTT------TEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTT---
T ss_pred             eeEEEcCCCCeEEEEECCC------CeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCc---
Confidence            7899999988888888764      48999998765 3333322111        2446799999997 66554432   


Q ss_pred             CCCCCCCCCCCCCccEEEEEcCC
Q 004971          633 AEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       633 ~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                                    .+|++..++
T Consensus       245 --------------~~y~f~~~~  253 (255)
T 3qqz_A          245 --------------RFYRFTPQS  253 (255)
T ss_dssp             --------------EEEEEEC--
T ss_pred             --------------eEEEEEecC
Confidence                          488887654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.09  E-value=8.7e-05  Score=78.92  Aligned_cols=161  Identities=15%  Similarity=0.113  Sum_probs=103.0

Q ss_pred             CceeeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCC--c
Q 004971          458 NAFSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG--Y  534 (721)
Q Consensus       458 ~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g--~  534 (721)
                      ....++++| ++..|+++..        . ..|+.++.++.    .+..+.........++|+++|++|+++....+  .
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~--------~-~~I~~id~~~~----~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~  204 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGE--------Q-HPTRLIDFEKE----YVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDR  204 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEB--------T-EEEEEEETTTT----EEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTS
T ss_pred             CCCEEEECCCCCCeEEEEeC--------C-CcEEEEECCCC----EEEEEecCCCCcceEEEeCCCCEEEEEeCCCCccc
Confidence            345667777 4666666642        1 56777777654    45555444456778999999998888875432  2


Q ss_pred             eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeE
Q 004971          535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY  614 (721)
Q Consensus       535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~  614 (721)
                      ..++.++.++.. .....+... .....++++|++..|+++....      ..|++++.+++....+...........++
T Consensus       205 ~~v~~~~~~g~~-~~~~~l~~~-~~p~giavdp~~g~lyv~d~~~------~~V~~~~~~~~~~~~~~~~~~~~~P~gia  276 (430)
T 3tc9_A          205 PNNYILTRESGF-KVITELTKG-QNCNGAETHPINGELYFNSWNA------GQVFRYDFTTQETTPLFTIQDSGWEFHIQ  276 (430)
T ss_dssp             EEEEEEEGGGTS-CSEEEEEEC-SSCCCEEECTTTCCEEEEETTT------TEEEEEETTTTEEEEEEECSSSSCCEEEE
T ss_pred             ceEEEEeCCCce-eeeeeeccC-CCceEEEEeCCCCEEEEEECCC------CEEEEEECCCCcEEEEEEcCCCCcceeEE
Confidence            356667765432 111222222 2236789999555677777543      28999999887664554332223466799


Q ss_pred             ECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971          615 FSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       615 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                      |+|+|++|+++.....                .|++++.++
T Consensus       277 ~~pdG~~lyv~d~~~~----------------~I~~~~~d~  301 (430)
T 3tc9_A          277 FHPSGNYAYIVVVNQH----------------YILRSDYDW  301 (430)
T ss_dssp             ECTTSSEEEEEETTTT----------------EEEEEEEET
T ss_pred             EcCCCCEEEEEECCCC----------------EEEEEeCCc
Confidence            9999999888776543                499988765

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.07  E-value=0.00027  Score=67.51  Aligned_cols=179  Identities=12%  Similarity=0.073  Sum_probs=112.1

Q ss_pred             ceeCcCCCEEEEEe----CCcEEEEECCCCceEE-Ee-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971          424 PSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQ-VY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV  497 (721)
Q Consensus       424 ~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~-l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~  497 (721)
                      +.|++  ..|+...    .+.|.++|+++++... +. ....+.....+++++|+...-      .++  .++.+|.++.
T Consensus        26 L~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw------~~~--~v~v~D~~tl   95 (243)
T 3mbr_X           26 LFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTW------RNH--EGFVYDLATL   95 (243)
T ss_dssp             EEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEES------SSS--EEEEEETTTT
T ss_pred             EEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEe------eCC--EEEEEECCcC
Confidence            56664  4666662    3589999999998643 33 445555566677889888762      334  4555555443


Q ss_pred             CCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCc---CceeeEEccCCCEEEE
Q 004971          498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW---SDTMCNWSPDGEWIAF  574 (721)
Q Consensus       498 ~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~---~~~~~~~SpDG~~l~~  574 (721)
                         .....+....   ....+++|+++|+.+..   ..+|+.+|.++.+......+..+..   ..+.+.|. +|+ |+.
T Consensus        96 ---~~~~ti~~~~---~Gwglt~dg~~L~vSdg---s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lya  164 (243)
T 3mbr_X           96 ---TPRARFRYPG---EGWALTSDDSHLYMSDG---TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLA  164 (243)
T ss_dssp             ---EEEEEEECSS---CCCEEEECSSCEEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEE
T ss_pred             ---cEEEEEeCCC---CceEEeeCCCEEEEECC---CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-EEE
Confidence               2334444332   23566789998877643   6789999999887522222322221   23445555 664 655


Q ss_pred             EEccCCCCCCceeEEEEecCCCceEEeeecC------------CCCCcCCeEECCCCCEEEEEEecC
Q 004971          575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG------------SAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~------------~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      .....      ..|.++|..+|++.......            .....+.++|+|+++.|+++...-
T Consensus       165 nvw~s------~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w  225 (243)
T 3mbr_X          165 NVWLT------SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW  225 (243)
T ss_dssp             EETTT------TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC
T ss_pred             EECCC------CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC
Confidence            54332      38999999999877655421            112336799999999998888754

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.07  E-value=0.0016  Score=73.47  Aligned_cols=58  Identities=7%  Similarity=0.028  Sum_probs=38.1

Q ss_pred             eeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-Eec
Q 004971          586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLT  662 (721)
Q Consensus       586 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt  662 (721)
                      ..|+.+|+.+++..--..  .........++.+|..+++. ...+                .|+++|++++++. ++.
T Consensus       457 g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g-~~dg----------------~l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQG-TADG----------------RLVAYHAATGEKLWEAP  515 (677)
T ss_dssp             EEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEE-CTTS----------------EEEEEETTTCCEEEEEE
T ss_pred             cEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEE-CCCC----------------cEEEEECCCCceeeeee
Confidence            579999999987543332  22334455677788877665 3332                5999999888764 444

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.06  E-value=6.5e-05  Score=77.84  Aligned_cols=173  Identities=7%  Similarity=-0.085  Sum_probs=114.9

Q ss_pred             CCCceeCcCCCEEEEEeCCcEEEEECCCCc-----------e-EEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcE
Q 004971          421 GSFPSFSPKGDRIAFVEFPGVYVVNSDGSN-----------R-RQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEV  487 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~~~~~l~v~d~~~g~-----------~-~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  487 (721)
                      ...+++++....++..+...+.+|+++...           . ..+. .. +..++|  |++.|++..        ++.+
T Consensus        40 ~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~--------~~~l  108 (388)
T 1xip_A           40 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVST--------RNAL  108 (388)
T ss_dssp             CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEE--------SSEE
T ss_pred             ccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEc--------CCcE
Confidence            456799999988888888899999865322           1 2233 44 889999  999999873        3678


Q ss_pred             EEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEcc
Q 004971          488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP  567 (721)
Q Consensus       488 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~Sp  567 (721)
                      ++|++....     ....+.........+.+.+.  .++....   ++.|++||+.++.   ...+.   ..+..++|||
T Consensus       109 ~v~dv~sl~-----~~~~~~~~~~~v~~i~~~~p--~~av~~~---dG~L~v~dl~~~~---~~~~~---~~Vs~v~WSp  172 (388)
T 1xip_A          109 YSLDLEELS-----EFRTVTSFEKPVFQLKNVNN--TLVILNS---VNDLSALDLRTKS---TKQLA---QNVTSFDVTN  172 (388)
T ss_dssp             EEEESSSTT-----CEEEEEECSSCEEEEEECSS--EEEEEET---TSEEEEEETTTCC---EEEEE---ESEEEEEECS
T ss_pred             EEEEchhhh-----ccCccceeecceeeEEecCC--CEEEEEC---CCCEEEEEccCCc---ccccc---CCceEEEEcC
Confidence            888775443     22223333333444455543  2666665   7899999999877   33332   3468899999


Q ss_pred             CCCEEEEEEccCCCCCCceeEEEEecCCCce--EEee-e-----c--CCCCCcCCeEECCCCCEEEEEEecC
Q 004971          568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTGL--RKLI-Q-----S--GSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       568 DG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~-~-----~--~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      +|  ++++..++       .+.+|+.++++.  ++.. .     .  ++...+.++.|.+++++++......
T Consensus       173 kG--~~vg~~dg-------~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~  235 (388)
T 1xip_A          173 SQ--LAVLLKDR-------SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVI  235 (388)
T ss_dssp             SE--EEEEETTS-------CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCC
T ss_pred             Cc--eEEEEcCC-------cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCC
Confidence            99  56666654       678888888774  2222 1     0  1345677899999999987655543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.04  E-value=0.014  Score=64.21  Aligned_cols=103  Identities=12%  Similarity=0.008  Sum_probs=62.0

Q ss_pred             ceEEccCCCEEEEEEee----------------------------------CCceeEEEEECCCCcccceEECcCCCcCc
Q 004971          515 FPSVSPDGKWIVFRSTR----------------------------------TGYKNLYIMDAEGGEGYGLHRLTEGPWSD  560 (721)
Q Consensus       515 ~~~~SpDg~~l~~~s~~----------------------------------~g~~~l~~~d~~~g~~~~~~~l~~~~~~~  560 (721)
                      .++++|++..|++....                                  .....|+.+|+.+|+.  +-+...... .
T Consensus       390 ~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~--~W~~~~~~~-~  466 (571)
T 2ad6_A          390 VDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA--KWTKWEKFA-A  466 (571)
T ss_dssp             BCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE--EEEEEESSC-C
T ss_pred             CceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE--EEEecCCCC-c
Confidence            46899999988876542                                  1246899999999884  333322211 1


Q ss_pred             eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEe
Q 004971          561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD  627 (721)
Q Consensus       561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~  627 (721)
                      ....+...+..|++...++       .|+.+|..+|+..-....+.......+.+..||+.++....
T Consensus       467 ~~~~~~t~gg~v~~g~~dg-------~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~  526 (571)
T 2ad6_A          467 WGGTLYTKGGLVWYATLDG-------YLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             CSBCEEETTTEEEEECTTS-------EEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             cceeEEECCCEEEEEcCCC-------eEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEEC
Confidence            2233344566677765554       89999999998764444322222233456688875554443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.00  E-value=0.00053  Score=72.82  Aligned_cols=139  Identities=12%  Similarity=0.080  Sum_probs=83.5

Q ss_pred             cCceeecCC--CCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          323 FTPATSPGN--NKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       323 ~~~~~sp~d--G~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      ..++++| +  +..|++....     ..|+++|+++++...+..   .......++++++|+ |+++...+...    ..
T Consensus       142 ~gvavd~-~s~~g~Lyv~D~~-----~~I~~id~~~g~v~~~~~---~~~~P~giavd~dG~-lyVad~~~~~~----~~  207 (433)
T 4hw6_A          142 WRMMFDP-NSNYDDLYWVGQR-----DAFRHVDFVNQYVDIKTT---NIGQCADVNFTLNGD-MVVVDDQSSDT----NT  207 (433)
T ss_dssp             CEEEECT-TTTTCEEEEECBT-----SCEEEEETTTTEEEEECC---CCSCEEEEEECTTCC-EEEEECCSCTT----SE
T ss_pred             ceEEEcc-ccCCCEEEEEeCC-----CCEEEEECCCCEEEEeec---CCCCccEEEECCCCC-EEEEcCCCCcc----cc
Confidence            4678887 6  3456664322     469999998887655532   234467789999999 66655432110    02


Q ss_pred             eeEEEeccCCCCc--ceecccCCCCceeCcCCCEEEEEe--CCcEEEEECCCCce-EEEe----ecCceeeEEcCCCCeE
Q 004971          401 QLLLENIKSPLPD--ISLFRFDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNR-RQVY----FKNAFSTVWDPVREAV  471 (721)
Q Consensus       401 ~l~~~~~~~~~~~--~~~~~~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~-~~l~----~~~~~~~~~spdg~~l  471 (721)
                      .++..........  ..........++++|++..|++..  ...|++++.+++.. ..+.    ......++|+|+|++|
T Consensus       208 gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~L  287 (433)
T 4hw6_A          208 GIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWA  287 (433)
T ss_dssp             EEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEE
T ss_pred             eEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEE
Confidence            2333332222110  111112245578999444576663  56799999987775 4443    1223469999999999


Q ss_pred             EEEe
Q 004971          472 VYTS  475 (721)
Q Consensus       472 a~~~  475 (721)
                      +++.
T Consensus       288 Yvad  291 (433)
T 4hw6_A          288 YIIY  291 (433)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8875

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=98.00  E-value=0.00071  Score=76.12  Aligned_cols=264  Identities=10%  Similarity=0.016  Sum_probs=146.8

Q ss_pred             eecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCc--------ccCcEEcCCCCEEEEEEeeCCCC--CC
Q 004971          327 TSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTH--------HLNPFISPDSSRVGYHKCRGGST--RE  396 (721)
Q Consensus       327 ~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~--------~~~~~~Spdg~~l~~~~~~~~~~--~~  396 (721)
                      ++| ||+++++.....|++...++++|+++++.  +...-.+...        ...++|. |.+.+++....+...  ..
T Consensus       137 ~~~-~~~~~~~~ls~~G~d~~~~~~~d~~t~~~--~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~  212 (711)
T 4hvt_A          137 CFQ-NPNRYLISMSFGGKDEMFFREWDLEKKDF--VKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSS  212 (711)
T ss_dssp             CSS-STTEEEEEEEETTCSEEEEEEEETTTTEE--CTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTT
T ss_pred             cCC-CCCEEEEEeCCCCCceeEEEEEECCcCCc--CCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcC
Confidence            789 99999999999999999999999999973  3211111111        1344887 666676654322211  11


Q ss_pred             CCcceeEEEeccCCCCc-ceecccCCC----CceeCcCCCE----EEEE-e----CCcEEEEECCC--CceEEEeecCce
Q 004971          397 DGNNQLLLENIKSPLPD-ISLFRFDGS----FPSFSPKGDR----IAFV-E----FPGVYVVNSDG--SNRRQVYFKNAF  460 (721)
Q Consensus       397 ~~~~~l~~~~~~~~~~~-~~~~~~~~~----~~~~SpDG~~----la~~-~----~~~l~v~d~~~--g~~~~l~~~~~~  460 (721)
                      ....+++.+.+.++... ...+.....    .+..++|+++    +++. .    ...+++.+++.  ++..+|......
T Consensus       213 ~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  292 (711)
T 4hvt_A          213 LYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA  292 (711)
T ss_dssp             SSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC
T ss_pred             CCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc
Confidence            22356788877766322 122221111    1345677773    3332 1    35788888764  444555422223


Q ss_pred             eeEEcCCCCeEEEEecCCCCC--CCCCcEEEEEEEccCCCC----ccceEE-cccCC-CCCcceEEccCCCEEEEEEeeC
Q 004971          461 STVWDPVREAVVYTSGGPEFA--SESSEVDIISINVDDVDG----VSAVRR-LTTNG-KNNAFPSVSPDGKWIVFRSTRT  532 (721)
Q Consensus       461 ~~~~spdg~~la~~~~~~~~~--~~~~~~~i~~~~~~~~~~----~~~~~~-l~~~~-~~~~~~~~SpDg~~l~~~s~~~  532 (721)
                      .+..+.++ ++++....+.-.  ....+..|+.++.+....    ....+. ++... .....+.|+.|  +|++....+
T Consensus       293 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~l~~~~~~~  369 (711)
T 4hvt_A          293 TLQGSFKE-YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD--RVFLATYDN  369 (711)
T ss_dssp             EEEEEETT-EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS--CEEEEEEET
T ss_pred             eEeeeECC-EEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC--EEEEEEEEC
Confidence            34455566 444433211000  001344566666654200    012333 33332 33445667755  577777777


Q ss_pred             CceeEEEEECCCCcccceEE---CcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971          533 GYKNLYIMDAEGGEGYGLHR---LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ  603 (721)
Q Consensus       533 g~~~l~~~d~~~g~~~~~~~---l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  603 (721)
                      +..+|+++++.+|+.. ...   +.. .+.+.....+++++.+++.....   .....+|.+|+. ++.+.+..
T Consensus       370 ~~~~l~~~~~~~g~~~-~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~---~~P~~~~~~d~~-~~~~~l~~  437 (711)
T 4hvt_A          370 VVAKVVTFTLENEQWT-KPVVLKLPY-QNAIFGMSSYEEEEEALITIENS---IVPPTIYLWVKT-HELKIIRK  437 (711)
T ss_dssp             TEEEEEEECEETTEEC-CCEEECCCS-TTCEEEEECCTTCSCEEEEEECS---SSCCEEEEECTT-SCEEEEEC
T ss_pred             CEEEEEEEECCCCceE-EEeccCCCC-CeEEEEEeecCcCCEEEEEEecC---CCCCEEEEEeCC-CcEEEEec
Confidence            7889999998776310 222   332 23344556678888787776543   355689999998 66666654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.91  E-value=0.01  Score=61.52  Aligned_cols=245  Identities=12%  Similarity=0.041  Sum_probs=119.3

Q ss_pred             CCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC
Q 004971          331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP  410 (721)
Q Consensus       331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  410 (721)
                      ++..|++...     +..|+.+|.++|+..--...  .......+...  +..|++....+         .++..+..++
T Consensus       102 ~~~~v~v~~~-----~g~l~a~d~~tG~~~W~~~~--~~~~~~~p~~~--~~~v~v~~~~g---------~l~~~d~~tG  163 (376)
T 3q7m_A          102 SGGHVYIGSE-----KAQVYALNTSDGTVAWQTKV--AGEALSRPVVS--DGLVLIHTSNG---------QLQALNEADG  163 (376)
T ss_dssp             ETTEEEEEET-----TSEEEEEETTTCCEEEEEEC--SSCCCSCCEEE--TTEEEEECTTS---------EEEEEETTTC
T ss_pred             eCCEEEEEcC-----CCEEEEEECCCCCEEEEEeC--CCceEcCCEEE--CCEEEEEcCCC---------eEEEEECCCC
Confidence            5556666432     24599999999985432221  11122234443  33555433222         2444444333


Q ss_pred             CCcceeccc-------CCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEee-c-------------CceeeEEcCCC
Q 004971          411 LPDISLFRF-------DGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVYF-K-------------NAFSTVWDPVR  468 (721)
Q Consensus       411 ~~~~~~~~~-------~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~~-~-------------~~~~~~~spdg  468 (721)
                      .........       ....+... ++ .+++.. .+.|+.+|..+|+...-.. .             ....+..  ++
T Consensus       164 ~~~W~~~~~~~~~~~~~~~~~~~~-~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~  239 (376)
T 3q7m_A          164 AVKWTVNLDMPSLSLRGESAPTTA-FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VN  239 (376)
T ss_dssp             CEEEEEECCC-----CCCCCCEEE-TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ET
T ss_pred             cEEEEEeCCCCceeecCCCCcEEE-CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--EC
Confidence            211111000       01223333 33 455543 5679999998887644331 1             0112222  34


Q ss_pred             CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc
Q 004971          469 EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY  548 (721)
Q Consensus       469 ~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~  548 (721)
                      ..+++.+       .++  .|+.++...+    +.. ..........  ...++..|++.+.   +..|+.+|..+|+. 
T Consensus       240 ~~v~~~~-------~~g--~l~~~d~~tG----~~~-w~~~~~~~~~--~~~~~~~l~~~~~---~g~l~~~d~~tG~~-  299 (376)
T 3q7m_A          240 GVVFALA-------YNG--NLTALDLRSG----QIM-WKRELGSVND--FIVDGNRIYLVDQ---NDRVMALTIDGGVT-  299 (376)
T ss_dssp             TEEEEEC-------TTS--CEEEEETTTC----CEE-EEECCCCEEE--EEEETTEEEEEET---TCCEEEEETTTCCE-
T ss_pred             CEEEEEe-------cCc--EEEEEECCCC----cEE-eeccCCCCCC--ceEECCEEEEEcC---CCeEEEEECCCCcE-
Confidence            5566554       123  3455555432    211 1111111222  3335677887775   56899999999984 


Q ss_pred             ceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEe
Q 004971          549 GLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSD  627 (721)
Q Consensus       549 ~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~  627 (721)
                       .-... ........+...  +..|++...++       .|+.+|..+|+..-............+...  +..|++.+.
T Consensus       300 -~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g-------~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~  367 (376)
T 3q7m_A          300 -LWTQSDLLHRLLTSPVLY--NGNLVVGDSEG-------YLHWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAK  367 (376)
T ss_dssp             -EEEECTTTTSCCCCCEEE--TTEEEEECTTS-------EEEEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBT
T ss_pred             -EEeecccCCCcccCCEEE--CCEEEEEeCCC-------eEEEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeC
Confidence             22222 111222344443  45777777654       799999999886544332112223344443  445666554


Q ss_pred             cC
Q 004971          628 YG  629 (721)
Q Consensus       628 ~~  629 (721)
                      ++
T Consensus       368 ~G  369 (376)
T 3q7m_A          368 DG  369 (376)
T ss_dssp             TS
T ss_pred             CC
Confidence            43

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.90  E-value=0.0023  Score=61.93  Aligned_cols=199  Identities=10%  Similarity=0.049  Sum_probs=120.3

Q ss_pred             CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecc--cCCCCceeCcCCCEEEEE-eCCcEEEEE
Q 004971          369 KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFR--FDGSFPSFSPKGDRIAFV-EFPGVYVVN  445 (721)
Q Consensus       369 ~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~SpDG~~la~~-~~~~l~v~d  445 (721)
                      .....+++|+|+++.|+.+....        ..++..+..+.........  .+...+++.++|++++.. ....+++++
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~~--------~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~   97 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINKP--------AAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS   97 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEETT--------EEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred             ccCcceeEEeCCCCEEEEEECCC--------CeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence            34577899999999998876653        4677777763321111111  233456788888543332 366788888


Q ss_pred             CCCCce-E---EEe--------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-----
Q 004971          446 SDGSNR-R---QVY--------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-----  508 (721)
Q Consensus       446 ~~~g~~-~---~l~--------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-----  508 (721)
                      +..... .   .+.        +.....++|+|++++|+++..       .....||.++.--.  ......+..     
T Consensus        98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E-------~~p~~i~~~~g~~~--~~~l~i~~~~~~~~  168 (255)
T 3qqz_A           98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE-------KNPIEVYKVNGLLS--SNELHISKDKALQR  168 (255)
T ss_dssp             ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE-------SSSEEEEEEESTTC--SSCCEEEECHHHHH
T ss_pred             cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEEC-------cCCceEEEEccccc--CCceeeecchhhcc
Confidence            764432 2   111        112368999999999999873       33557887772100  001222211     


Q ss_pred             --CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCC-------cCceeeEEccCCCEEEEEEccC
Q 004971          509 --NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP-------WSDTMCNWSPDGEWIAFASDRD  579 (721)
Q Consensus       509 --~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~-------~~~~~~~~SpDG~~l~~~~~~~  579 (721)
                        .-.....+++.|....|++.+..  ...|..+|.++ +......|..+.       .....++|.|+|+ |++.+...
T Consensus       169 ~~~~~d~S~l~~dp~tg~lliLS~~--s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n  244 (255)
T 3qqz_A          169 QFTLDDVSGAEFNQQKNTLLVLSHE--SRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPN  244 (255)
T ss_dssp             TCCSSCCCEEEEETTTTEEEEEETT--TTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTT
T ss_pred             ccccCCceeEEEcCCCCeEEEEECC--CCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCc
Confidence              11345678999999999988874  56788999874 443334444321       1346799999997 77666553


Q ss_pred             CCCCCceeEEEEecCC
Q 004971          580 NPGSGSFEMYLIHPNG  595 (721)
Q Consensus       580 ~~~~~~~~i~~~d~~~  595 (721)
                             .+|++...+
T Consensus       245 -------~~y~f~~~~  253 (255)
T 3qqz_A          245 -------RFYRFTPQS  253 (255)
T ss_dssp             -------EEEEEEC--
T ss_pred             -------eEEEEEecC
Confidence                   788886543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.90  E-value=0.0026  Score=67.67  Aligned_cols=146  Identities=10%  Similarity=0.095  Sum_probs=88.5

Q ss_pred             cCceeecCC-CCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC-CCCcccCcEE-------cCCCCEEEEEEeeCCC
Q 004971          323 FTPATSPGN-NKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS-PKTHHLNPFI-------SPDSSRVGYHKCRGGS  393 (721)
Q Consensus       323 ~~~~~sp~d-G~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~-~~~~~~~~~~-------Spdg~~l~~~~~~~~~  393 (721)
                      ..++|+| . +..|++....    ...|+++|++++....+..... .......++|       +++|++|+++......
T Consensus       142 ~~la~dp-~~~~~Lyv~~~~----~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~  216 (496)
T 3kya_A          142 GRLAFDP-LNKDHLYICYDG----HKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK  216 (496)
T ss_dssp             EEEEEET-TEEEEEEEEEET----EEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred             CEEEEcc-CCCCEEEEEECC----CCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence            4678887 5 4455554332    3569999999988766653211 1223567889       9999988887665421


Q ss_pred             CCCCCcceeEEEeccC--CCC-----cceecccCCCCceeCcCCCEEEEEe--CCcEEEEECC-------CCce------
Q 004971          394 TREDGNNQLLLENIKS--PLP-----DISLFRFDGSFPSFSPKGDRIAFVE--FPGVYVVNSD-------GSNR------  451 (721)
Q Consensus       394 ~~~~~~~~l~~~~~~~--~~~-----~~~~~~~~~~~~~~SpDG~~la~~~--~~~l~v~d~~-------~g~~------  451 (721)
                      .  .....+++.+...  ...     ...........++++|++..|+++.  .+.|+++|++       ++..      
T Consensus       217 ~--~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          217 G--DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             G--GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             c--ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence            0  0002344443222  111     0111112345578899877888874  6679999997       5553      


Q ss_pred             ------EEEe----ecCceeeEEcCCCCeEEEEe
Q 004971          452 ------RQVY----FKNAFSTVWDPVREAVVYTS  475 (721)
Q Consensus       452 ------~~l~----~~~~~~~~~spdg~~la~~~  475 (721)
                            ..+.    ......++|+|+|+.|+++-
T Consensus       295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD  328 (496)
T 3kya_A          295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV  328 (496)
T ss_dssp             GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             ccccccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence                  2333    23467899999999888874

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.89  E-value=0.0016  Score=66.03  Aligned_cols=194  Identities=22%  Similarity=0.294  Sum_probs=107.9

Q ss_pred             CCEEEEEe-CCcEEEEECCCCceEEE-e--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE
Q 004971          430 GDRIAFVE-FPGVYVVNSDGSNRRQV-Y--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR  505 (721)
Q Consensus       430 G~~la~~~-~~~l~v~d~~~g~~~~l-~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  505 (721)
                      +..|++.. .+.|+.+|.+ ++.... .  ...+..+...++|. |++.+       .+  -.|+.++..+.    ....
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt-------~~--~~l~~~d~~g~----~~~~  171 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGS-------ND--NYLYAINPDGT----EKWR  171 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEEC-------TT--SEEEEECTTSC----EEEE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEc-------CC--CEEEEECCCCC----EeEE
Confidence            33565554 6789999998 554322 2  23345667777776 54543       12  24555555432    3233


Q ss_pred             cccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCc
Q 004971          506 LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS  585 (721)
Q Consensus       506 l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~  585 (721)
                      ..........+...++|. |++.+     ..|+++| .+++.  ..........+..+..+++|. |+++..+.      
T Consensus       172 ~~~~~~~~~~~~~d~~g~-l~v~t-----~~l~~~d-~~g~~--~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~------  235 (330)
T 3hxj_A          172 FKTNDAITSAASIGKDGT-IYFGS-----DKVYAIN-PDGTE--KWNFYAGYWTVTRPAISEDGT-IYVTSLDG------  235 (330)
T ss_dssp             EECSSCCCSCCEECTTCC-EEEES-----SSEEEEC-TTSCE--EEEECCSSCCCSCCEECTTSC-EEEEETTT------
T ss_pred             EecCCCceeeeEEcCCCE-EEEEe-----CEEEEEC-CCCcE--EEEEccCCcceeceEECCCCe-EEEEcCCC------
Confidence            333333456677778887 44333     5699999 55553  333333333456788888886 55555543      


Q ss_pred             eeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCC
Q 004971          586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNS  665 (721)
Q Consensus       586 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~  665 (721)
                       .|+.++.++........  .......+...++|+ |++.+.++                 .|+++|.++..........
T Consensus       236 -gl~~~~~~g~~~~~~~~--~~~~~~~~~~~~~g~-l~v~t~~g-----------------gl~~~d~~g~~~~~~~~~~  294 (330)
T 3hxj_A          236 -HLYAINPDGTEKWRFKT--GKRIESSPVIGNTDT-IYFGSYDG-----------------HLYAINPDGTEKWNFETGS  294 (330)
T ss_dssp             -EEEEECTTSCEEEEEEC--SSCCCSCCEECTTSC-EEEECTTC-----------------EEEEECTTSCEEEEEECSS
T ss_pred             -eEEEECCCCCEeEEeeC--CCCccccceEcCCCe-EEEecCCC-----------------CEEEECCCCcEEEEEEcCC
Confidence             79999865544444332  233445677777775 44444432                 3999997544444443333


Q ss_pred             CCCCCceecC
Q 004971          666 FEDGTPAWGP  675 (721)
Q Consensus       666 ~~~~~~~~sp  675 (721)
                      ....++...+
T Consensus       295 ~~~~~~~~d~  304 (330)
T 3hxj_A          295 WIIATPVIDE  304 (330)
T ss_dssp             CCCSCCEECT
T ss_pred             ccccceEEcC
Confidence            3334455433

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.89  E-value=0.013  Score=60.73  Aligned_cols=294  Identities=15%  Similarity=0.130  Sum_probs=136.0

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceE-eecCCC----------CCccccccCCCCCEEEEEecCCCC
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTR-RLTPYG----------VADFSPAVSPSGKYTAVASYGNKG  239 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~-~lt~~~----------~~~~~p~~SPDG~~la~~~~~~~~  239 (721)
                      +|.+++..|++....          ..|+.++.++|+.. ......          .....|..  ++..|++...    
T Consensus        48 ~p~v~~~~v~~~~~~----------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----  111 (376)
T 3q7m_A           48 HPALADNVVYAADRA----------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSE----  111 (376)
T ss_dssp             CCEEETTEEEEECTT----------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEET----
T ss_pred             ccEEECCEEEEEcCC----------CeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcC----
Confidence            576778877765433          27899998777653 332211          11112222  4455555442    


Q ss_pred             CCcccceeeeeEEEEEcCCCceeEEEeccC---CcceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeC
Q 004971          240 WDGEVEMLSTDIYIFLTRDGTQRVKIVENG---GWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVT  316 (721)
Q Consensus       240 w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~---~~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~  316 (721)
                              ...|+.+|.++|+..--.....   ..|... ++++++.  .. ++  .++.++...+.       ......
T Consensus       112 --------~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~-~~~v~v~--~~-~g--~l~~~d~~tG~-------~~W~~~  170 (376)
T 3q7m_A          112 --------KAQVYALNTSDGTVAWQTKVAGEALSRPVVS-DGLVLIH--TS-NG--QLQALNEADGA-------VKWTVN  170 (376)
T ss_dssp             --------TSEEEEEETTTCCEEEEEECSSCCCSCCEEE-TTEEEEE--CT-TS--EEEEEETTTCC-------EEEEEE
T ss_pred             --------CCEEEEEECCCCCEEEEEeCCCceEcCCEEE-CCEEEEE--cC-CC--eEEEEECCCCc-------EEEEEe
Confidence                    2479999999998653322221   123333 4566662  21 33  33323322222       222221


Q ss_pred             CCCCc-----ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCC---------cccCcEEcCCCC
Q 004971          317 PPGLH-----AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKT---------HHLNPFISPDSS  382 (721)
Q Consensus       317 ~~~~~-----~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~---------~~~~~~~Spdg~  382 (721)
                      .....     ...+.+   ++..+++.     ..+..|+.+|.++|+..-......+..         ....+...  +.
T Consensus       171 ~~~~~~~~~~~~~~~~---~~~~v~~g-----~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~  240 (376)
T 3q7m_A          171 LDMPSLSLRGESAPTT---AFGAAVVG-----GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--NG  240 (376)
T ss_dssp             CCC-----CCCCCCEE---ETTEEEEC-----CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE--TT
T ss_pred             CCCCceeecCCCCcEE---ECCEEEEE-----cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE--CC
Confidence            11100     123333   33455552     233459999999887533222111100         11223332  45


Q ss_pred             EEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEee----c
Q 004971          383 RVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVYF----K  457 (721)
Q Consensus       383 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~~----~  457 (721)
                      .|++....+         .++..+..++... ....... ......++..|++.. .+.|+.+|..+|+...-..    .
T Consensus       241 ~v~~~~~~g---------~l~~~d~~tG~~~-w~~~~~~-~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~  309 (376)
T 3q7m_A          241 VVFALAYNG---------NLTALDLRSGQIM-WKRELGS-VNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR  309 (376)
T ss_dssp             EEEEECTTS---------CEEEEETTTCCEE-EEECCCC-EEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTS
T ss_pred             EEEEEecCc---------EEEEEECCCCcEE-eeccCCC-CCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCC
Confidence            555543222         3555555444221 1111111 112223455666664 6789999999888654332    1


Q ss_pred             CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCcee
Q 004971          458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKN  536 (721)
Q Consensus       458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~  536 (721)
                      ....+..  .+..|++.+       .++  .|+.++...+   .......... .....+...  +..|++.+.   +..
T Consensus       310 ~~~~~~~--~~~~l~v~~-------~~g--~l~~~d~~tG---~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~---~G~  370 (376)
T 3q7m_A          310 LLTSPVL--YNGNLVVGD-------SEG--YLHWINVEDG---RFVAQQKVDSSGFQTEPVAA--DGKLLIQAK---DGT  370 (376)
T ss_dssp             CCCCCEE--ETTEEEEEC-------TTS--EEEEEETTTC---CEEEEEECCTTCBCSCCEEE--TTEEEEEBT---TSC
T ss_pred             cccCCEE--ECCEEEEEe-------CCC--eEEEEECCCC---cEEEEEecCCCcceeCCEEE--CCEEEEEeC---CCE
Confidence            2223333  355677664       233  4555554443   1222222212 122334433  456766665   566


Q ss_pred             EEEEE
Q 004971          537 LYIMD  541 (721)
Q Consensus       537 l~~~d  541 (721)
                      |+.++
T Consensus       371 l~~~~  375 (376)
T 3q7m_A          371 VYSIT  375 (376)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            87775

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.88  E-value=0.013  Score=66.15  Aligned_cols=82  Identities=13%  Similarity=-0.029  Sum_probs=52.1

Q ss_pred             eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeE
Q 004971          535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY  614 (721)
Q Consensus       535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~  614 (721)
                      ..|+.||+.+|+.  +-++..+. ......++..|..|+++..++       .|+.||.++|+..--...+.......+.
T Consensus       455 g~l~A~D~~tG~~--~W~~~~~~-~~~~g~~~tagglvf~gt~dg-------~l~a~D~~tG~~lw~~~~~~~~~~~p~t  524 (689)
T 1yiq_A          455 GKLIAWDPVKQQA--AWEVPYVT-IFNGGTLSTAGNLVFEGSADG-------RVIAYAADTGEKLWEQPAASGVMAAPVT  524 (689)
T ss_dssp             EEEEEEETTTTEE--EEEEEESS-SCCCCEEEETTTEEEEECTTS-------EEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred             eeEEEEECCCCCe--EeEccCCC-CccCccceECCCEEEEECCCC-------cEEEEECCCCccceeeeCCCCcccCceE
Confidence            5799999999984  33332222 123346677788777765554       8999999999865433332333334577


Q ss_pred             ECCCCCEEEEEE
Q 004971          615 FSPDGKSIVFTS  626 (721)
Q Consensus       615 ~SpDG~~l~~~~  626 (721)
                      |+.||+..+...
T Consensus       525 y~~~G~qyv~~~  536 (689)
T 1yiq_A          525 YSVDGEQYVTFM  536 (689)
T ss_dssp             EEETTEEEEEEE
T ss_pred             EEECCEEEEEEE
Confidence            889998654443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.87  E-value=0.0062  Score=61.63  Aligned_cols=171  Identities=19%  Similarity=0.242  Sum_probs=96.8

Q ss_pred             CCceeCcCCCEEEEEe-CCcEEEEECCCCceE-EEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971          422 SFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRR-QVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV  497 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~-~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~  497 (721)
                      ..+...++|. |++.. .+.|+.+|.+ ++.. ...  ...+..+...++|. |++.+         +  .|+.++..+.
T Consensus       140 ~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t---------~--~l~~~d~~g~  205 (330)
T 3hxj_A          140 ATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS---------D--KVYAINPDGT  205 (330)
T ss_dssp             SCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES---------S--SEEEECTTSC
T ss_pred             eeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe---------C--EEEEECCCCc
Confidence            3456667776 44444 5889999998 5543 332  33455667767776 44432         2  3444443322


Q ss_pred             CCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971          498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       498 ~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~  577 (721)
                          ..............+...++|. |++.+.   ...|+.+|..+..   +............+...++|+ |+++..
T Consensus       206 ----~~~~~~~~~~~~~~~~~~~~g~-l~v~t~---~~gl~~~~~~g~~---~~~~~~~~~~~~~~~~~~~g~-l~v~t~  273 (330)
T 3hxj_A          206 ----EKWNFYAGYWTVTRPAISEDGT-IYVTSL---DGHLYAINPDGTE---KWRFKTGKRIESSPVIGNTDT-IYFGSY  273 (330)
T ss_dssp             ----EEEEECCSSCCCSCCEECTTSC-EEEEET---TTEEEEECTTSCE---EEEEECSSCCCSCCEECTTSC-EEEECT
T ss_pred             ----EEEEEccCCcceeceEECCCCe-EEEEcC---CCeEEEECCCCCE---eEEeeCCCCccccceEcCCCe-EEEecC
Confidence                2333333334566788888875 555554   4679999865433   333333333334567776775 666665


Q ss_pred             cCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEec
Q 004971          578 RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY  628 (721)
Q Consensus       578 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~  628 (721)
                      ++       .|+.+|. +++....... ....+..+..+++|+ |++.+.+
T Consensus       274 ~g-------gl~~~d~-~g~~~~~~~~-~~~~~~~~~~d~~g~-l~~gt~~  314 (330)
T 3hxj_A          274 DG-------HLYAINP-DGTEKWNFET-GSWIIATPVIDENGT-IYFGTRN  314 (330)
T ss_dssp             TC-------EEEEECT-TSCEEEEEEC-SSCCCSCCEECTTCC-EEEECTT
T ss_pred             CC-------CEEEECC-CCcEEEEEEc-CCccccceEEcCCCE-EEEEcCC
Confidence            53       7999997 4443333322 334566778878887 4444433

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.86  E-value=0.00024  Score=75.66  Aligned_cols=163  Identities=11%  Similarity=0.135  Sum_probs=103.3

Q ss_pred             ceeeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC----CCCcceEE-------ccCCCEEE
Q 004971          459 AFSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG----KNNAFPSV-------SPDGKWIV  526 (721)
Q Consensus       459 ~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~-------SpDg~~l~  526 (721)
                      ...++++| +...|+++..        ....|+.++..+.    .+..+....    .....++|       +++|++|+
T Consensus       141 p~~la~dp~~~~~Lyv~~~--------~~~~i~~ID~~~~----~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~ly  208 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYD--------GHKAIQLIDLKNR----MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMI  208 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEE--------TEEEEEEEETTTT----EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEE
T ss_pred             CCEEEEccCCCCEEEEEEC--------CCCeEEEEECCCC----EEEEEEccCccccCCCcEEEEeecccccCCCCCEEE
Confidence            34566777 4666666642        2456888887764    555554332    23566889       99999988


Q ss_pred             EEEeeCC----ceeEEEEECCC-Ccccc---eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC----
Q 004971          527 FRSTRTG----YKNLYIMDAEG-GEGYG---LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN----  594 (721)
Q Consensus       527 ~~s~~~g----~~~l~~~d~~~-g~~~~---~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~----  594 (721)
                      +.....+    ...+++++... |....   ...+.... ....++.+|+++.|+++....      ..|+++|++    
T Consensus       209 vad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~------g~V~r~d~~~~~~  281 (496)
T 3kya_A          209 VAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEK------GQVFRLDLVDYFK  281 (496)
T ss_dssp             EEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTT------TEEEEECHHHHHH
T ss_pred             EEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCC------CEEEEEecccccc
Confidence            8876542    24688887554 33210   01222222 235788999888898888754      279999997    


Q ss_pred             ---CCce------------EEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971          595 ---GTGL------------RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       595 ---~~~~------------~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~  656 (721)
                         +++.            .++...+.......++|+|+|++|+++.....                .|++++.++.
T Consensus       282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h----------------~I~kid~dg~  342 (496)
T 3kya_A          282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNH----------------YFMRSDYDEI  342 (496)
T ss_dssp             HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTT----------------EEEEEEEETT
T ss_pred             cccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCC----------------EEEEEecCCC
Confidence               5553            23333222344568999999998888775543                4999776653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.79  E-value=0.1  Score=60.12  Aligned_cols=188  Identities=9%  Similarity=0.119  Sum_probs=108.0

Q ss_pred             eeCcCCCEEEEEe-CCcEEEEECCCCceEEEe-------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC
Q 004971          425 SFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY-------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD  496 (721)
Q Consensus       425 ~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~  496 (721)
                      ...++|+.|.+.. ...|++++..+++.+.+.       ...+..+...++|+ |++.+.        .  -|+.++..+
T Consensus       412 ~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~--------~--Gl~~~~~~~  480 (795)
T 4a2l_A          412 YVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LWLGTL--------S--ALVRFNPEQ  480 (795)
T ss_dssp             EEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EEEEES--------S--CEEEEETTT
T ss_pred             EEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EEEEec--------C--ceeEEeCCC
Confidence            4456776354544 578999999888776654       12345566666665 344331        1  255555544


Q ss_pred             CCCccceEEcccC-------CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc---C----CCcCcee
Q 004971          497 VDGVSAVRRLTTN-------GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT---E----GPWSDTM  562 (721)
Q Consensus       497 ~~~~~~~~~l~~~-------~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~---~----~~~~~~~  562 (721)
                      .    ....+...       ...+..+...++|+ |.+...    ..|++++..+++   . .+.   .    ....+..
T Consensus       481 ~----~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~----~Gl~~~~~~~~~---~-~~~~~~~~~~l~~~~i~~  547 (795)
T 4a2l_A          481 R----SFTTIEKEKDGTPVVSKQITTLFRDSHKR-LWIGGE----EGLSVFKQEGLD---I-QKASILPVSNVTKLFTNC  547 (795)
T ss_dssp             T----EEEECCBCTTCCBCCCCCEEEEEECTTCC-EEEEES----SCEEEEEEETTE---E-EECCCSCSCGGGGSCEEE
T ss_pred             C----eEEEccccccccccCCceEEEEEECCCCC-EEEEeC----CceEEEeCCCCe---E-EEecCCCCCCCCCCeeEE
Confidence            2    33443321       12344556677776 444443    359999987765   3 221   1    1123456


Q ss_pred             eEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecC--CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCC
Q 004971          563 CNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG--SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPH  640 (721)
Q Consensus       563 ~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~  640 (721)
                      +..+++|+ |.++...        .|+++|..+++.+......  ....+..+...++|+. .+.+ ..+          
T Consensus       548 i~~d~~g~-lWigT~~--------Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~l-Wi~t-~~G----------  606 (795)
T 4a2l_A          548 IYEASNGI-IWVGTRE--------GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRL-WLST-NRG----------  606 (795)
T ss_dssp             EEECTTSC-EEEEESS--------CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCE-EEEE-TTE----------
T ss_pred             EEECCCCC-EEEEeCC--------CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCE-EEEc-CCc----------
Confidence            77788887 4444443        5999999887766554321  1223455677778874 3333 332          


Q ss_pred             CCCCCccEEEEEcCCCCeEEeccC
Q 004971          641 QYQPYGEIFKIKLDGSDLKRLTQN  664 (721)
Q Consensus       641 ~~~~~~~l~~~d~~~~~~~~lt~~  664 (721)
                             |.+++.++++.+.++..
T Consensus       607 -------l~~~~~~~~~~~~~~~~  623 (795)
T 4a2l_A          607 -------ISCFNPETEKFRNFTES  623 (795)
T ss_dssp             -------EEEEETTTTEEEEECGG
T ss_pred             -------eEEEcCCCCcEEEcCCc
Confidence                   88888888777776653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.78  E-value=0.00071  Score=65.17  Aligned_cols=158  Identities=9%  Similarity=0.092  Sum_probs=99.1

Q ss_pred             eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEE
Q 004971          461 STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM  540 (721)
Q Consensus       461 ~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~  540 (721)
                      .+.|+ |+ .|+.++      ...+...|..++..++   .....+.. +........+++|++|+....+  ...++++
T Consensus        47 GL~~~-~~-~Lyest------G~~g~S~v~~vD~~Tg---kv~~~~~l-~~~~FgeGit~~g~~ly~ltw~--~~~v~v~  112 (262)
T 3nol_A           47 GFFYR-NG-YFYEST------GLNGRSSIRKVDIESG---KTLQQIEL-GKRYFGEGISDWKDKIVGLTWK--NGLGFVW  112 (262)
T ss_dssp             EEEEE-TT-EEEEEE------EETTEEEEEEECTTTC---CEEEEEEC-CTTCCEEEEEEETTEEEEEESS--SSEEEEE
T ss_pred             eEEEE-CC-EEEEEC------CCCCCceEEEEECCCC---cEEEEEec-CCccceeEEEEeCCEEEEEEee--CCEEEEE
Confidence            45676 44 666665      2345667778887765   12333332 2244445577789999988765  5689999


Q ss_pred             ECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC-CCCc---CCeEEC
Q 004971          541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS-AGRA---NHPYFS  616 (721)
Q Consensus       541 d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~~---~~~~~S  616 (721)
                      |.++.+.  +.++....   ....+++||++|+.+...       ..|+.+|..+.+...-..... ...+   +.+.|.
T Consensus       113 D~~t~~~--~~ti~~~~---eG~glt~dg~~L~~SdGs-------~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~  180 (262)
T 3nol_A          113 NIRNLRQ--VRSFNYDG---EGWGLTHNDQYLIMSDGT-------PVLRFLDPESLTPVRTITVTAHGEELPELNELEWV  180 (262)
T ss_dssp             ETTTCCE--EEEEECSS---CCCCEEECSSCEEECCSS-------SEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred             ECccCcE--EEEEECCC---CceEEecCCCEEEEECCC-------CeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence            9999885  55555432   234566889988777643       389999999887655433211 1122   235676


Q ss_pred             CCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEec
Q 004971          617 PDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT  662 (721)
Q Consensus       617 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt  662 (721)
                       ||+ |+......+                .|+++|++++++...-
T Consensus       181 -~G~-lyan~w~~~----------------~I~vIDp~tG~V~~~I  208 (262)
T 3nol_A          181 -DGE-IFANVWQTN----------------KIVRIDPETGKVTGII  208 (262)
T ss_dssp             -TTE-EEEEETTSS----------------EEEEECTTTCBEEEEE
T ss_pred             -CCE-EEEEEccCC----------------eEEEEECCCCcEEEEE
Confidence             774 554333332                5999999999875433

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.72  E-value=0.002  Score=65.66  Aligned_cols=164  Identities=11%  Similarity=0.099  Sum_probs=100.6

Q ss_pred             CCcEEEEECCC--CceEEEe-ec--------CceeeEEcC--CCC-eEEEEecCCCCCCCCCcEEEEEEEccCCCCccce
Q 004971          438 FPGVYVVNSDG--SNRRQVY-FK--------NAFSTVWDP--VRE-AVVYTSGGPEFASESSEVDIISINVDDVDGVSAV  503 (721)
Q Consensus       438 ~~~l~v~d~~~--g~~~~l~-~~--------~~~~~~~sp--dg~-~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  503 (721)
                      .+.|+++|+++  ++.+.+. .+        ....+.+.+  ||+ +|+++...    .....+.|++++.++.    ..
T Consensus        82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~----~~~s~ielf~~d~~~~----~~  153 (355)
T 3sre_A           82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP----GSSSTVEVFKFQEEEK----SL  153 (355)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECS----TTCCEEEEEEEETTTT----EE
T ss_pred             CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECC----CCCCeEEEEEEECCCC----EE
Confidence            56799999973  4455554 22        233455544  566 45555422    2457899999998764    33


Q ss_pred             EEccc---CC-CCCcceEEccCCCEEEEEEee---------------CCceeEEEEECCCCcccceEECcCCCcCceeeE
Q 004971          504 RRLTT---NG-KNNAFPSVSPDGKWIVFRSTR---------------TGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN  564 (721)
Q Consensus       504 ~~l~~---~~-~~~~~~~~SpDg~~l~~~s~~---------------~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~  564 (721)
                      ..+..   .. .......+.++|+..+ .+..               .....||++|..  +   ++.+..+-...+.++
T Consensus       154 ~~~~~~~g~~~~~pND~~v~~~G~fyv-t~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~---~~~~~~~l~~pNGia  227 (355)
T 3sre_A          154 LHLKTIRHKLLPSVNDIVAVGPEHFYA-TNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D---VRVVAEGFDFANGIN  227 (355)
T ss_dssp             EEEEEECCTTCSSEEEEEEEETTEEEE-EESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C---CEEEEEEESSEEEEE
T ss_pred             EEEeccccCCCCCCceEEEeCCCCEEe-cCCcEeCCcccccchhhccCCccEEEEEECC--e---EEEeecCCcccCcce
Confidence            33322   11 3455678999997443 3321               124689999873  4   444444334457899


Q ss_pred             EccCCCEEEEEEccCCCCCCceeEEEEecCC-CceE--EeeecCCCCCcCCeEECC-CCCEEE
Q 004971          565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNG-TGLR--KLIQSGSAGRANHPYFSP-DGKSIV  623 (721)
Q Consensus       565 ~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~-~~~~--~l~~~~~~~~~~~~~~Sp-DG~~l~  623 (721)
                      |||||+.|+++....      ..|++|+++. ++..  ++..  ..+....++..+ +|...+
T Consensus       228 ~spDg~~lYvadt~~------~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~lwv  282 (355)
T 3sre_A          228 ISPDGKYVYIAELLA------HKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGDLWV  282 (355)
T ss_dssp             ECTTSSEEEEEEGGG------TEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCCEEE
T ss_pred             ECCCCCEEEEEeCCC------CeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCcEEE
Confidence            999999999988653      3799998863 3332  2332  345567789999 588544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.71  E-value=0.0017  Score=62.05  Aligned_cols=178  Identities=12%  Similarity=0.051  Sum_probs=98.1

Q ss_pred             cCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEE
Q 004971          175 SGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIF  254 (721)
Q Consensus       175 dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~  254 (721)
                      +++.|+.+....+.       ..|..+|+++|+..+-.+.+...+...+.++|++|.......           ..++++
T Consensus        29 ~~~~LyestG~~g~-------S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~-----------~~v~v~   90 (243)
T 3mbr_X           29 LRGHLYESTGETGR-------SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN-----------HEGFVY   90 (243)
T ss_dssp             ETTEEEEEECCTTS-------CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS-----------SEEEEE
T ss_pred             ECCEEEEECCCCCC-------ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC-----------CEEEEE
Confidence            56666665444332       389999999998765434333333334566788887765333           589999


Q ss_pred             EcCCCceeEEEeccCCcceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEE--eCCCCCcc---cCceeec
Q 004971          255 LTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQR--VTPPGLHA---FTPATSP  329 (721)
Q Consensus       255 d~~~g~~~~l~~~~~~~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~sp  329 (721)
                      |.++.+...-....+.......|++.+|.  ++  +.-.|+ +.++.+..      ....  +...+..+   ..+.+. 
T Consensus        91 D~~tl~~~~ti~~~~~Gwglt~dg~~L~v--Sd--gs~~l~-~iDp~t~~------~~~~I~V~~~g~~~~~lNeLe~~-  158 (243)
T 3mbr_X           91 DLATLTPRARFRYPGEGWALTSDDSHLYM--SD--GTAVIR-KLDPDTLQ------QVGSIKVTAGGRPLDNLNELEWV-  158 (243)
T ss_dssp             ETTTTEEEEEEECSSCCCEEEECSSCEEE--EC--SSSEEE-EECTTTCC------EEEEEECEETTEECCCEEEEEEE-
T ss_pred             ECCcCcEEEEEeCCCCceEEeeCCCEEEE--EC--CCCeEE-EEeCCCCe------EEEEEEEccCCcccccceeeEEe-
Confidence            99998866544333333344566654442  33  334566 33344331      1122  22222111   223331 


Q ss_pred             CCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC-----------CCCcccCcEEcCCCCEEEEEE
Q 004971          330 GNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS-----------PKTHHLNPFISPDSSRVGYHK  388 (721)
Q Consensus       330 ~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~-----------~~~~~~~~~~Spdg~~l~~~~  388 (721)
                       +| +|+. ..- .  ...|.++|+++|+.........           ...-..+++++|++++|+.+.
T Consensus       159 -~G-~lya-nvw-~--s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          159 -NG-ELLA-NVW-L--TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             -TT-EEEE-EET-T--TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             -CC-EEEE-EEC-C--CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence             45 4553 332 1  2259999999998654432211           112345689999999988754

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.69  E-value=0.0028  Score=65.22  Aligned_cols=192  Identities=13%  Similarity=0.078  Sum_probs=97.5

Q ss_pred             CceeCcC---CCEEEEEe--C-----CcEEEEECCCCc---eEEEe---e------cCceeeEEcCCCCeEEEEecCCC-
Q 004971          423 FPSFSPK---GDRIAFVE--F-----PGVYVVNSDGSN---RRQVY---F------KNAFSTVWDPVREAVVYTSGGPE-  479 (721)
Q Consensus       423 ~~~~SpD---G~~la~~~--~-----~~l~v~d~~~g~---~~~l~---~------~~~~~~~~spdg~~la~~~~~~~-  479 (721)
                      .++++||   +.+|++..  .     ..|..++.+++.   .+.+.   .      .....++|+||| +|+++..... 
T Consensus        79 gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~  157 (352)
T 2ism_A           79 GLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYE  157 (352)
T ss_dssp             EEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTC
T ss_pred             eEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCC
Confidence            4689998   66776663  2     679999987653   22222   1      123579999999 5666642110 


Q ss_pred             C----CCCCCcEEEEEEEccCCCCc---------cceEEcccCCCCCcceEEccCCCEEEEEEeeCCc------eeEEEE
Q 004971          480 F----ASESSEVDIISINVDDVDGV---------SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY------KNLYIM  540 (721)
Q Consensus       480 ~----~~~~~~~~i~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~------~~l~~~  540 (721)
                      .    ......-.|++++.++.-..         ...+.+...-.....++|+|+...|++.......      ..|.++
T Consensus       158 ~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i  237 (352)
T 2ism_A          158 RELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI  237 (352)
T ss_dssp             GGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEE
T ss_pred             CccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe
Confidence            0    00122357888887652000         0111222222346678999954456665542221      246665


Q ss_pred             ECCCC--------------cccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc-------eE
Q 004971          541 DAEGG--------------EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG-------LR  599 (721)
Q Consensus       541 d~~~g--------------~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~-------~~  599 (721)
                      .....              ....+..+.. ......++| .+|+ |+++....      ..|+++++++..       ..
T Consensus       238 ~~G~nyGwp~~~g~~~~~~~~~p~~~~~~-~~ap~G~~~-~~G~-l~v~~~~~------~~v~~v~~~~~~~~~~~~~~~  308 (352)
T 2ism_A          238 VPGGNYGWPRVVGRGNDPRYRDPLYFWPQ-GFPPGNLAF-FRGD-LYVAGLRG------QALLRLVLEGERGRWRVLRVE  308 (352)
T ss_dssp             CTTCBCCTTTCCSCCCCTTSCCCSEECTT-CCCEEEEEE-ETTE-EEEEETTT------TEEEEEEEEEETTEEEEEEEE
T ss_pred             ccCCcCCCCcccCCCCCCCCcCCeEecCC-CCCCcceEE-ECCE-EEEEECCC------CEEEEEEECCCCcceeecchh
Confidence            43210              0000111111 112244566 3554 55555432      378888776443       12


Q ss_pred             EeeecCCCCCcCCeEECCCCCEEEEEEe
Q 004971          600 KLIQSGSAGRANHPYFSPDGKSIVFTSD  627 (721)
Q Consensus       600 ~l~~~~~~~~~~~~~~SpDG~~l~~~~~  627 (721)
                      .+..  .......+++.|||.. +++..
T Consensus       309 ~~~~--~~~rp~~v~~~pdG~l-yv~~~  333 (352)
T 2ism_A          309 TALS--GFGRLREVQVGPDGAL-YVTTS  333 (352)
T ss_dssp             EEEE--SSCCEEEEEECTTSCE-EEEEC
T ss_pred             eecc--cCCCeeEEEECCCCcE-EEEEe
Confidence            2222  2356678999999964 44443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.67  E-value=0.031  Score=63.11  Aligned_cols=71  Identities=11%  Similarity=-0.014  Sum_probs=41.7

Q ss_pred             eeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-EeccC
Q 004971          586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLTQN  664 (721)
Q Consensus       586 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt~~  664 (721)
                      ..|+.||+.+|+..--...  ........++..|..|++.+ .++                .|+++|.++|++. ++.-.
T Consensus       455 g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~tagglvf~gt-~dg----------------~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPY--VTIFNGGTLSTAGNLVFEGS-ADG----------------RVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEEC-TTS----------------EEEEEETTTCCEEEEEECS
T ss_pred             eeEEEEECCCCCeEeEccC--CCCccCccceECCCEEEEEC-CCC----------------cEEEEECCCCccceeeeCC
Confidence            5799999999975533332  22233346666777666543 332                4999999988764 44433


Q ss_pred             CCCCCC-ceecC
Q 004971          665 SFEDGT-PAWGP  675 (721)
Q Consensus       665 ~~~~~~-~~~sp  675 (721)
                      .+.... ..|+.
T Consensus       516 ~~~~~~p~ty~~  527 (689)
T 1yiq_A          516 SGVMAAPVTYSV  527 (689)
T ss_dssp             SCCCSCCEEEEE
T ss_pred             CCcccCceEEEE
Confidence            333333 35544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.66  E-value=0.089  Score=57.81  Aligned_cols=58  Identities=5%  Similarity=-0.076  Sum_probs=34.6

Q ss_pred             eeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-Eec
Q 004971          586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLT  662 (721)
Q Consensus       586 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt  662 (721)
                      ..|+.+|+.+++.+--...  ........+...+..|++.+ .++                .|+++|+++|++. ++.
T Consensus       444 g~l~a~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~v~~g~-~dg----------------~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          444 GQIRAFDLTTGKAKWTKWE--KFAAWGGTLYTKGGLVWYAT-LDG----------------YLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEEC-TTS----------------EEEEEETTTCCEEEEEE
T ss_pred             CeEEEEECCCCCEEEEecC--CCCccceeEEECCCEEEEEc-CCC----------------eEEEEECCCCCEEEEEe
Confidence            5899999998876433222  12222333344456666543 332                5999999888765 443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.66  E-value=0.0012  Score=70.04  Aligned_cols=160  Identities=14%  Similarity=0.195  Sum_probs=97.1

Q ss_pred             CceeeEEcCC--CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC--C
Q 004971          458 NAFSTVWDPV--REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT--G  533 (721)
Q Consensus       458 ~~~~~~~spd--g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~--g  533 (721)
                      ....++|+|+  +..|+++..       .  ..|+.++..++    .+..+.........+++++||+ |+++....  .
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~-------~--~~I~~id~~~g----~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~  205 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQ-------R--DAFRHVDFVNQ----YVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDT  205 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECB-------T--SCEEEEETTTT----EEEEECCCCSCEEEEEECTTCC-EEEEECCSCTT
T ss_pred             CCceEEEccccCCCEEEEEeC-------C--CCEEEEECCCC----EEEEeecCCCCccEEEECCCCC-EEEEcCCCCcc
Confidence            3456777774  556666531       1  45667776443    5555544444577899999999 77665421  1


Q ss_pred             ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce-EEeeecCCCCCcCC
Q 004971          534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL-RKLIQSGSAGRANH  612 (721)
Q Consensus       534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~  612 (721)
                      ...++.++..++... ...+.. ......++++|++..|+++....      ..|++++.++++. +.+...........
T Consensus       206 ~~gv~~~~~~~~~~~-~~~~~~-~~~P~giavd~~~G~lyv~d~~~------~~V~~~d~~~g~~~~~~~~~~~~~~~~~  277 (433)
T 4hw6_A          206 NTGIYLFTRASGFTE-RLSLCN-ARGAKTCAVHPQNGKIYYTRYHH------AMISSYDPATGTLTEEEVMMDTKGSNFH  277 (433)
T ss_dssp             SEEEEEECGGGTTCC-EEEEEE-CSSBCCCEECTTTCCEEECBTTC------SEEEEECTTTCCEEEEEEECSCCSSCEE
T ss_pred             cceEEEEECCCCeec-cccccc-cCCCCEEEEeCCCCeEEEEECCC------CEEEEEECCCCeEEEEEeccCCCCCccc
Confidence            234666665443210 112221 12236789999555677776542      3799999987776 44443322222335


Q ss_pred             eEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971          613 PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       613 ~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                      ++|+|||++|+++.....                .|++++.++
T Consensus       278 ia~dpdG~~LYvad~~~~----------------~I~~~~~d~  304 (433)
T 4hw6_A          278 IVWHPTGDWAYIIYNGKH----------------CIYRVDYNR  304 (433)
T ss_dssp             EEECTTSSEEEEEETTTT----------------EEEEEEBCT
T ss_pred             EEEeCCCCEEEEEeCCCC----------------EEEEEeCCC
Confidence            999999999988776543                499988763

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.64  E-value=0.12  Score=56.77  Aligned_cols=82  Identities=10%  Similarity=-0.010  Sum_probs=46.2

Q ss_pred             eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeE
Q 004971          535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY  614 (721)
Q Consensus       535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~  614 (721)
                      ..|+.+|+.+|+.  +-+..... ....-..+..|..|++...++       .|+.+|.++|+..--...+......-+.
T Consensus       453 G~l~A~D~~tG~~--~W~~~~~~-~~~~g~~~tagg~vf~gt~dg-------~l~A~D~~tG~~lW~~~l~~g~~~~P~~  522 (599)
T 1w6s_A          453 GQIKAYNAITGDY--KWEKMERF-AVWGGTMATAGDLVFYGTLDG-------YLKARDSDTGDLLWKFKIPSGAIGYPMT  522 (599)
T ss_dssp             EEEEEECTTTCCE--EEEEEESS-CCCSBCEEETTTEEEEECTTS-------EEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred             CeEEEEECCCCCE--EeEecCCC-CccCcceEecCCEEEEECCCC-------eEEEEECCCCCEEEEeeCCCCcEeccEE
Confidence            5788999998884  22222111 111122334566666665553       8999999999865333322222233456


Q ss_pred             ECCCCCEEEEEE
Q 004971          615 FSPDGKSIVFTS  626 (721)
Q Consensus       615 ~SpDG~~l~~~~  626 (721)
                      |..||+..+...
T Consensus       523 y~~~G~qyv~~~  534 (599)
T 1w6s_A          523 YTHKGTQYVAIY  534 (599)
T ss_dssp             EEETTEEEEEEE
T ss_pred             EEeCCEEEEEEE
Confidence            778997544433

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.59  E-value=0.0079  Score=61.83  Aligned_cols=195  Identities=14%  Similarity=0.170  Sum_probs=100.1

Q ss_pred             CceeCcC---CCEEEEEe-C--------CcEEEEECCCC--c---eEEEe---e----cCceeeEEcCCCCeEEEEecCC
Q 004971          423 FPSFSPK---GDRIAFVE-F--------PGVYVVNSDGS--N---RRQVY---F----KNAFSTVWDPVREAVVYTSGGP  478 (721)
Q Consensus       423 ~~~~SpD---G~~la~~~-~--------~~l~v~d~~~g--~---~~~l~---~----~~~~~~~~spdg~~la~~~~~~  478 (721)
                      .++++||   +.+|++.. .        ..|..++.+++  .   .+.+.   .    .....+.|.|||. |+++....
T Consensus        77 gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~  155 (354)
T 3a9g_A           77 GLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDA  155 (354)
T ss_dssp             EEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCT
T ss_pred             eEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCC
Confidence            4689998   55666652 2        67888988765  1   22222   1    1345799999995 66653211


Q ss_pred             -CC----CCCCCcEEEEEEEccCCCCcc----ceEEcccCCCCCcceEEccCCCEEEEEEeeC-CceeEEEEECCC----
Q 004971          479 -EF----ASESSEVDIISINVDDVDGVS----AVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT-GYKNLYIMDAEG----  544 (721)
Q Consensus       479 -~~----~~~~~~~~i~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~-g~~~l~~~d~~~----  544 (721)
                       ..    ......-.|++++.++.-...    ..+.+...-.....++|+|+...|++..... ....|.++....    
T Consensus       156 ~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGw  235 (354)
T 3a9g_A          156 ADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGW  235 (354)
T ss_dssp             TCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCT
T ss_pred             CCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCC
Confidence             00    001223478888876530000    1122333333567789999544466655432 223566654311    


Q ss_pred             ----C------cccceEECcCCCcCceeeEE-------ccCCCEEEEEEccCCCCCCceeEEEEecCCC-ceE---Eeee
Q 004971          545 ----G------EGYGLHRLTEGPWSDTMCNW-------SPDGEWIAFASDRDNPGSGSFEMYLIHPNGT-GLR---KLIQ  603 (721)
Q Consensus       545 ----g------~~~~~~~l~~~~~~~~~~~~-------SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~-~~~---~l~~  603 (721)
                          +      ....+..+.........++|       ..+| .|+++....      ..|+++++++. +..   .+..
T Consensus       236 p~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~------~~v~~~~~~~~g~~~~~~~~~~  308 (354)
T 3a9g_A          236 PLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRG------SMLAAVNFGDNMEVRKISTFFK  308 (354)
T ss_dssp             TTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTT------TEEEEEEECGGGCEEEEEEECT
T ss_pred             CcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCC------CEEEEEEECCCCcccceeeecc
Confidence                0      00011122111122345666       2466 455555432      37888888753 332   2221


Q ss_pred             cCCCCCcCCeEECCCCCEEEEEEe
Q 004971          604 SGSAGRANHPYFSPDGKSIVFTSD  627 (721)
Q Consensus       604 ~~~~~~~~~~~~SpDG~~l~~~~~  627 (721)
                       ........+++.|||. |+++..
T Consensus       309 -~~~~rp~~v~~~pDG~-lyv~~~  330 (354)
T 3a9g_A          309 -NVFGRLRDVVIDDDGG-ILISTS  330 (354)
T ss_dssp             -TTSCCEEEEEECTTSC-EEEEEC
T ss_pred             -CCCCCeeEEEECCCCc-EEEEEe
Confidence             1234567899999996 555554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=97.58  E-value=0.0008  Score=69.64  Aligned_cols=169  Identities=7%  Similarity=-0.003  Sum_probs=105.7

Q ss_pred             CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC-----CCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC
Q 004971          458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD-----VDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT  532 (721)
Q Consensus       458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~  532 (721)
                      .+..+++++....++.++        ...+.+|..+.-.     ............... +.+++|  |+++|++. .  
T Consensus        39 ~~nlLais~~~gll~a~~--------~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~--  104 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAAS--------GSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-T--  104 (388)
T ss_dssp             CCBCEEEETTTTEEEEEE--------TTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-E--
T ss_pred             cccEEEEcCCCCEEEEeC--------CCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-c--
Confidence            466788888888887765        2456666543211     000001111222344 788999  99999988 3  


Q ss_pred             CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCC
Q 004971          533 GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH  612 (721)
Q Consensus       533 g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~  612 (721)
                       +..|.+||+.+-..  ...+......+..+.+.+.  .++....++       .|++||+..+....+.     ..+.+
T Consensus       105 -~~~l~v~dv~sl~~--~~~~~~~~~~v~~i~~~~p--~~av~~~dG-------~L~v~dl~~~~~~~~~-----~~Vs~  167 (388)
T 1xip_A          105 -RNALYSLDLEELSE--FRTVTSFEKPVFQLKNVNN--TLVILNSVN-------DLSALDLRTKSTKQLA-----QNVTS  167 (388)
T ss_dssp             -SSEEEEEESSSTTC--EEEEEECSSCEEEEEECSS--EEEEEETTS-------EEEEEETTTCCEEEEE-----ESEEE
T ss_pred             -CCcEEEEEchhhhc--cCccceeecceeeEEecCC--CEEEEECCC-------CEEEEEccCCcccccc-----CCceE
Confidence             56899999876542  2222222333455566544  377777665       8999999988765542     35789


Q ss_pred             eEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC---eEEec------c---CCCCCCCceecCC
Q 004971          613 PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD---LKRLT------Q---NSFEDGTPAWGPR  676 (721)
Q Consensus       613 ~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~---~~~lt------~---~~~~~~~~~~sp~  676 (721)
                      ++|||+|  +++...++                 .+.+|+.++++   .+.|.      +   +...+.+..|.++
T Consensus       168 v~WSpkG--~~vg~~dg-----------------~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~  224 (388)
T 1xip_A          168 FDVTNSQ--LAVLLKDR-----------------SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP  224 (388)
T ss_dssp             EEECSSE--EEEEETTS-----------------CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS
T ss_pred             EEEcCCc--eEEEEcCC-----------------cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecC
Confidence            9999999  45555443                 38888888887   34562      1   3445667888875

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.54  E-value=0.22  Score=57.19  Aligned_cols=188  Identities=7%  Similarity=0.015  Sum_probs=107.5

Q ss_pred             eeCcCCCEEEEEe-CCcEEEEECCCCceEEEee-----cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971          425 SFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVYF-----KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD  498 (721)
Q Consensus       425 ~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~~-----~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~  498 (721)
                      ...++|+ |.+.. ...|+.++..+++.+.+..     ..+..+...++|+ |++.+       . .  -|+.++..+. 
T Consensus       413 ~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt-------~-~--Gl~~~~~~~~-  479 (781)
T 3v9f_A          413 LKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGT-------H-A--GVFVIDLASK-  479 (781)
T ss_dssp             EECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEE-------T-T--EEEEEESSSS-
T ss_pred             EECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEE-------C-C--ceEEEeCCCC-
Confidence            3345564 44443 4689999988877665541     2345555566664 44443       1 2  3555555432 


Q ss_pred             CccceEEcccC------CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC----CcCceeeEEccC
Q 004971          499 GVSAVRRLTTN------GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG----PWSDTMCNWSPD  568 (721)
Q Consensus       499 ~~~~~~~l~~~------~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~----~~~~~~~~~SpD  568 (721)
                         ....+...      ...+..+...++|+ |.+...   ...|+++|.++++   ...+...    ...+..+..+++
T Consensus       480 ---~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~---~~Gl~~~~~~~~~---~~~~~~~~~l~~~~i~~i~~d~~  549 (781)
T 3v9f_A          480 ---KVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTF---GGGVGIYTPDMQL---VRKFNQYEGFCSNTINQIYRSSK  549 (781)
T ss_dssp             ---SCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEES---SSCEEEECTTCCE---EEEECTTTTCSCSCEEEEEECTT
T ss_pred             ---eEEecccCcccccccceeEEEEEcCCCC-EEEEEc---CCCEEEEeCCCCe---EEEccCCCCCCCCeeEEEEECCC
Confidence               22222211      12344556677776 455553   3469999998776   4444321    123456777788


Q ss_pred             CCEEEEEEccCCCCCCceeE-EEEecCCCceEEeeecC--CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCC
Q 004971          569 GEWIAFASDRDNPGSGSFEM-YLIHPNGTGLRKLIQSG--SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY  645 (721)
Q Consensus       569 G~~l~~~~~~~~~~~~~~~i-~~~d~~~~~~~~l~~~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~  645 (721)
                      |+ |.++...        .| +++|..+++.+......  ....+..+...++|+. .+.+ ..+               
T Consensus       550 g~-lWi~T~~--------Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~l-W~~t-~~G---------------  603 (781)
T 3v9f_A          550 GQ-MWLATGE--------GLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNI-WAST-NTG---------------  603 (781)
T ss_dssp             SC-EEEEETT--------EEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCE-EEEC-SSC---------------
T ss_pred             CC-EEEEECC--------CceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCE-EEEc-CCc---------------
Confidence            87 4455544        57 99999888766654321  1224566777888874 3333 332               


Q ss_pred             ccEEEEEcCCCCeEEecc
Q 004971          646 GEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       646 ~~l~~~d~~~~~~~~lt~  663 (721)
                        |+.++.++++.+.++.
T Consensus       604 --l~~~~~~~~~~~~~~~  619 (781)
T 3v9f_A          604 --ISCYITSKKCFYTYDH  619 (781)
T ss_dssp             --EEEEETTTTEEEEECG
T ss_pred             --eEEEECCCCceEEecc
Confidence              8888888877777664

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.51  E-value=0.01  Score=59.63  Aligned_cols=185  Identities=11%  Similarity=0.089  Sum_probs=109.6

Q ss_pred             eCCcEEEEECCCCceEEEeecCceeeEEcC----CCCe--EEEEecCCCCCCC--CCcEEEEEEEccCCCCccceEEccc
Q 004971          437 EFPGVYVVNSDGSNRRQVYFKNAFSTVWDP----VREA--VVYTSGGPEFASE--SSEVDIISINVDDVDGVSAVRRLTT  508 (721)
Q Consensus       437 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~sp----dg~~--la~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~l~~  508 (721)
                      ....|++||+++.....+..+....+..-|    .|+.  +++++++     .  .+++.+|.++....    .+..+..
T Consensus        48 k~~gL~Vydl~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R-----~~~~n~l~vf~iDp~~~----~l~~i~~  118 (355)
T 3amr_A           48 KKSGLVVYSLDGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNR-----SEGKNTIEIYAIDGKNG----TLQSMTD  118 (355)
T ss_dssp             TTTEEEEEETTSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEEC-----STTCCEEEEEEECTTTC----CEEECSC
T ss_pred             CCCCEEEEcCCCcEEEEccCCCcccEEEecccccCCceEeEEEEeCC-----CCCCCeEEEEEECCCCC----ceeeccc
Confidence            467899999977767777644444443333    4554  6677652     3  57889999876553    5555532


Q ss_pred             ------CC-CCCcceEE--ccC-CCEEEEEEeeCCceeEEEE-ECCCCcc--cceEECcCCCcCceeeEEccCCCEEEEE
Q 004971          509 ------NG-KNNAFPSV--SPD-GKWIVFRSTRTGYKNLYIM-DAEGGEG--YGLHRLTEGPWSDTMCNWSPDGEWIAFA  575 (721)
Q Consensus       509 ------~~-~~~~~~~~--SpD-g~~l~~~s~~~g~~~l~~~-d~~~g~~--~~~~~l~~~~~~~~~~~~SpDG~~l~~~  575 (721)
                            .. .....+++  +|+ |+..+|.+.+++....|.+ +...|..  +.++.+..+ .....++..+...+|+++
T Consensus       119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~  197 (355)
T 3amr_A          119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIA  197 (355)
T ss_dssp             TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEE
T ss_pred             cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEe
Confidence                  11 45566777  774 6667888877654333322 2233321  224554443 345678899888899988


Q ss_pred             EccCCCCCCceeEEEEecC--CCce-EEeeecCCC---CCcCCeEE--CCCCC-EEEEEEecCCCcCCCCCCCCCCCCCc
Q 004971          576 SDRDNPGSGSFEMYLIHPN--GTGL-RKLIQSGSA---GRANHPYF--SPDGK-SIVFTSDYGGISAEPISTPHQYQPYG  646 (721)
Q Consensus       576 ~~~~~~~~~~~~i~~~d~~--~~~~-~~l~~~~~~---~~~~~~~~--SpDG~-~l~~~~~~~~~~~~~~~~~~~~~~~~  646 (721)
                      ..+.       .||+++.+  ++.. +.+......   ..+..+++  .++|+ +|+.++....                
T Consensus       198 eEd~-------GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~----------------  254 (355)
T 3amr_A          198 EEDE-------AIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS----------------  254 (355)
T ss_dssp             ETTT-------EEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT----------------
T ss_pred             cccc-------eEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC----------------
Confidence            8764       69999965  3212 222211111   23455666  67888 6665554432                


Q ss_pred             cEEEEEcC
Q 004971          647 EIFKIKLD  654 (721)
Q Consensus       647 ~l~~~d~~  654 (721)
                      .+.+||.+
T Consensus       255 s~~Vydr~  262 (355)
T 3amr_A          255 SYAIYDRQ  262 (355)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEECC
Confidence            37778886

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.45  E-value=0.0014  Score=63.10  Aligned_cols=154  Identities=10%  Similarity=0.052  Sum_probs=93.9

Q ss_pred             eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEE
Q 004971          461 STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM  540 (721)
Q Consensus       461 ~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~  540 (721)
                      .+.|+  ++.|+.++.      .++.  |..++..++   .....+ ... .......+++|++|+....+  ...++++
T Consensus        59 GL~~~--~~~Ly~stG------~~g~--v~~iD~~Tg---kv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~--~~~v~V~  121 (268)
T 3nok_A           59 GLVFH--QGHFFESTG------HQGT--LRQLSLESA---QPVWME-RLG-NIFAEGLASDGERLYQLTWT--EGLLFTW  121 (268)
T ss_dssp             EEEEE--TTEEEEEET------TTTE--EEECCSSCS---SCSEEE-ECT-TCCEEEEEECSSCEEEEESS--SCEEEEE
T ss_pred             eEEEE--CCEEEEEcC------CCCE--EEEEECCCC---cEEeEE-CCC-CcceeEEEEeCCEEEEEEcc--CCEEEEE
Confidence            34554  567777762      3444  555555543   133344 222 33444567788999888764  5689999


Q ss_pred             ECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC-CC---CcCCeEEC
Q 004971          541 DAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS-AG---RANHPYFS  616 (721)
Q Consensus       541 d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~---~~~~~~~S  616 (721)
                      |.++.+.  +.++....   ....+++||++|+.+...       ..|+.+|.++.+...-..... ..   ..+.+.|.
T Consensus       122 D~~Tl~~--~~ti~~~~---eGwGLt~Dg~~L~vSdGs-------~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~  189 (268)
T 3nok_A          122 SGMPPQR--ERTTRYSG---EGWGLCYWNGKLVRSDGG-------TMLTFHEPDGFALVGAVQVKLRGQPVELINELECA  189 (268)
T ss_dssp             ETTTTEE--EEEEECSS---CCCCEEEETTEEEEECSS-------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred             ECCcCcE--EEEEeCCC---ceeEEecCCCEEEEECCC-------CEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe
Confidence            9999875  55555322   224555789988887643       389999999987655433211 11   12335666


Q ss_pred             CCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEe
Q 004971          617 PDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRL  661 (721)
Q Consensus       617 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l  661 (721)
                       ||+ |+......+                .|.++|++++++...
T Consensus       190 -dG~-lyanvw~s~----------------~I~vIDp~TG~V~~~  216 (268)
T 3nok_A          190 -NGV-IYANIWHSS----------------DVLEIDPATGTVVGV  216 (268)
T ss_dssp             -TTE-EEEEETTCS----------------EEEEECTTTCBEEEE
T ss_pred             -CCE-EEEEECCCC----------------eEEEEeCCCCcEEEE
Confidence             774 554333332                599999999987533

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.43  E-value=0.3  Score=56.06  Aligned_cols=192  Identities=10%  Similarity=0.036  Sum_probs=102.1

Q ss_pred             eeCcCCCEEEEEe-CCcEEEEECCCCceEEEe------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971          425 SFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV  497 (721)
Q Consensus       425 ~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~  497 (721)
                      ...++|. |.+.. ...|++++..++..+.+.      ...+..+...++|+ |++.+.         .--|+.++..+.
T Consensus       369 ~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~---------~~Gl~~~~~~~~  437 (781)
T 3v9f_A          369 CDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTY---------LGNISYYNTRLK  437 (781)
T ss_dssp             EECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEET---------TEEEEEECSSSC
T ss_pred             EEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEec---------cCCEEEEcCCCC
Confidence            3445564 44443 678999988765443321      22344555555554 444431         124555655432


Q ss_pred             CCccceEEcccC---CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC---CcCceeeEEccCCCE
Q 004971          498 DGVSAVRRLTTN---GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG---PWSDTMCNWSPDGEW  571 (721)
Q Consensus       498 ~~~~~~~~l~~~---~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~---~~~~~~~~~SpDG~~  571 (721)
                          ..+.+...   ...+..+...++|+ |.+...    ..|+++|..+++..........   ...+..+...++|+ 
T Consensus       438 ----~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~----~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-  507 (781)
T 3v9f_A          438 ----KFQIIELEKNELLDVRVFYEDKNKK-IWIGTH----AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-  507 (781)
T ss_dssp             ----EEEECCSTTTCCCCEEEEEECTTSE-EEEEET----TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-
T ss_pred             ----cEEEeccCCCCCCeEEEEEECCCCC-EEEEEC----CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC-
Confidence                44444321   12344455555554 555552    4699999988763222211100   12356677788887 


Q ss_pred             EEEEEccCCCCCCceeEEEEecCCCceEEeeecC--CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccE-
Q 004971          572 IAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG--SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI-  648 (721)
Q Consensus       572 l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l-  648 (721)
                      |.++....       .|+++|.++++.+......  ....+..+...++|+.. +.+. .+                 | 
T Consensus       508 lWigt~~~-------Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-i~T~-~G-----------------lv  561 (781)
T 3v9f_A          508 FWIGTFGG-------GVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMW-LATG-EG-----------------LV  561 (781)
T ss_dssp             EEEEESSS-------CEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEE-EEET-TE-----------------EE
T ss_pred             EEEEEcCC-------CEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEE-EEEC-CC-----------------ce
Confidence            44455432       5999999887666554210  12234566677788743 3333 32                 5 


Q ss_pred             EEEEcCCCCeEEecc
Q 004971          649 FKIKLDGSDLKRLTQ  663 (721)
Q Consensus       649 ~~~d~~~~~~~~lt~  663 (721)
                      +++|.++++.+.++.
T Consensus       562 ~~~d~~~~~~~~~~~  576 (781)
T 3v9f_A          562 CFPSARNFDYQVFQR  576 (781)
T ss_dssp             EESCTTTCCCEEECG
T ss_pred             EEECCCCCcEEEccc
Confidence            677766666555543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.43  E-value=0.00017  Score=75.15  Aligned_cols=182  Identities=10%  Similarity=0.047  Sum_probs=82.9

Q ss_pred             CCCEEEEEe-CCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc
Q 004971          429 KGDRIAFVE-FPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL  506 (721)
Q Consensus       429 DG~~la~~~-~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l  506 (721)
                      ++..|++.. ++.|+.||..+|+...-. .+.+....+..+++.++..+       .++.+..|+.....     ....+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s-------~dg~l~a~d~~tG~-----~~w~~   75 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDP-------NDGSLYTLGSKNNE-----GLTKL   75 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECT-------TTCCEEEC-----C-----CSEEC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeC-------CCCEEEEEECCCCc-----eeeee
Confidence            355676664 678999999988865433 23333333455665554432       34555555543322     22233


Q ss_pred             ccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCC
Q 004971          507 TTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG  584 (721)
Q Consensus       507 ~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~  584 (721)
                      ....  .....+.++. +..|++.+.   +..|+.+|..+|+.  +..+..+.    ...++|++..|+++..+.     
T Consensus        76 ~~~~~~~~~~sp~~~~-~~~v~~g~~---dg~v~a~D~~tG~~--~w~~~~~~----~~~~~p~~~~v~~~~~dg-----  140 (369)
T 2hz6_A           76 PFTIPELVQASPCRSS-DGILYMGKK---QDIWYVIDLLTGEK--QQTLSSAF----ADSLSPSTSLLYLGRTEY-----  140 (369)
T ss_dssp             SCCHHHHHTTCSCC------CCCCEE---EEEEEEECCC----------------------------EEEEEEEE-----
T ss_pred             eccCccccccCceEec-CCEEEEEeC---CCEEEEEECCCCcE--EEEecCCC----cccccccCCEEEEEecCC-----
Confidence            2211  0112333333 445665554   57899999999984  22222221    235677888888887664     


Q ss_pred             ceeEEEEecCCCceEEeeecCCCCCcCCeEECCCC---CEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971          585 SFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG---KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK  659 (721)
Q Consensus       585 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG---~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  659 (721)
                        .|+.||..+|+..--...   .....+.+++++   ..+++.+.++                 .|+++|+++|+..
T Consensus       141 --~v~a~d~~tG~~~W~~~~---~~~~~~~~~~~~~~~~~v~~~~~dg-----------------~v~a~d~~tG~~~  196 (369)
T 2hz6_A          141 --TITMYDTKTRELRWNATY---FDYAASLPEDDVDYKMSHFVSNGDG-----------------LVVTVDSESGDVL  196 (369)
T ss_dssp             --EEECCCSSSSSCCCEEEE---EEECCBCCCCCTTCCCCEEEEETSC-----------------EEEEECTTTCCEE
T ss_pred             --EEEEEECCCCCEEEeEec---ccccCccccCCccccceEEEECCCC-----------------EEEEEECCCCcEE
Confidence              899999988864321111   112345555543   3455544332                 4899998877654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.39  E-value=0.031  Score=57.32  Aligned_cols=236  Identities=15%  Similarity=0.129  Sum_probs=116.2

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc---cCCCCcccCcEEcCC---CCEEEEEEee-CCC
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF---VSPKTHHLNPFISPD---SSRVGYHKCR-GGS  393 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~---~~~~~~~~~~~~Spd---g~~l~~~~~~-~~~  393 (721)
                      ....++|.| ||+ |++. ...    ..|+++|. +++ +.+...   .........++++||   +..|++.... ...
T Consensus        30 ~P~~ia~~p-dG~-l~V~-e~~----g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~  100 (354)
T 3a9g_A           30 VPWSIAPLG-GGR-YLVT-ERP----GRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG  100 (354)
T ss_dssp             CEEEEEEEE-TTE-EEEE-ETT----TEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG
T ss_pred             CCeEEEEcC-CCe-EEEE-eCC----CEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC
Confidence            346788999 997 4443 332    45888874 454 333221   111234567899998   6777765442 110


Q ss_pred             CCCCCcceeEEEeccCCC------Ccc-eecc----cCCCCceeCcCCCEEEEE-e--------------CCcEEEEECC
Q 004971          394 TREDGNNQLLLENIKSPL------PDI-SLFR----FDGSFPSFSPKGDRIAFV-E--------------FPGVYVVNSD  447 (721)
Q Consensus       394 ~~~~~~~~l~~~~~~~~~------~~~-~~~~----~~~~~~~~SpDG~~la~~-~--------------~~~l~v~d~~  447 (721)
                      ..  ...+|...+.....      +.+ ...+    .....++|.|||. |++. +              .+.|+.++.+
T Consensus       101 ~~--~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d  177 (354)
T 3a9g_A          101 GH--IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEE  177 (354)
T ss_dssp             GC--EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred             CC--cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence            00  00234444433220      001 1111    1234589999995 5555 1              1468888887


Q ss_pred             CC--------ceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc-------------cceE
Q 004971          448 GS--------NRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV-------------SAVR  504 (721)
Q Consensus       448 ~g--------~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------~~~~  504 (721)
                      +.        ....+.  -.....++|+|+...|+++..+.     +..-+|..+...+.-..             ....
T Consensus       178 G~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~-----~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~  252 (354)
T 3a9g_A          178 GRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGP-----VGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVI  252 (354)
T ss_dssp             SCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCS-----SSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred             CCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCC-----CCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEe
Confidence            64        222222  23566899999655677665432     11123333332210000             0111


Q ss_pred             EcccCCCCCcceEE-------ccCCCEEEEEEeeCCceeEEEEECCCC-cccceEECcC-CCcCceeeEEccCCCEEEEE
Q 004971          505 RLTTNGKNNAFPSV-------SPDGKWIVFRSTRTGYKNLYIMDAEGG-EGYGLHRLTE-GPWSDTMCNWSPDGEWIAFA  575 (721)
Q Consensus       505 ~l~~~~~~~~~~~~-------SpDg~~l~~~s~~~g~~~l~~~d~~~g-~~~~~~~l~~-~~~~~~~~~~SpDG~~l~~~  575 (721)
                      .+.........++|       ..+|+ |++....  ..+|++++++.. +......+.. .......+++.|||. |+++
T Consensus       253 ~~~~~~~ap~G~~~y~g~~fp~~~G~-l~v~~~~--~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~-lyv~  328 (354)
T 3a9g_A          253 DTGSETWAPSGASFVHGDMFPGLRGW-LLIACLR--GSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGG-ILIS  328 (354)
T ss_dssp             ECTTCCCCEEEEEECCSSSCGGGTTE-EEEEETT--TTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSC-EEEE
T ss_pred             ecCCCCcCCcceEEECCCCCcccCCc-EEEEEcC--CCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCc-EEEE
Confidence            11011112333445       24563 4444432  457888888753 3211223332 234567899999995 6666


Q ss_pred             Ec
Q 004971          576 SD  577 (721)
Q Consensus       576 ~~  577 (721)
                      ..
T Consensus       329 ~~  330 (354)
T 3a9g_A          329 TS  330 (354)
T ss_dssp             EC
T ss_pred             Ee
Confidence            54

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.37  E-value=0.24  Score=54.46  Aligned_cols=55  Identities=9%  Similarity=-0.029  Sum_probs=31.2

Q ss_pred             eeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971          586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK  659 (721)
Q Consensus       586 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  659 (721)
                      ..|+.+|+.+|+..=-...  ......-..+..|..|++. ..++                .|+.+|.++|++.
T Consensus       453 G~l~A~D~~tG~~~W~~~~--~~~~~~g~~~tagg~vf~g-t~dg----------------~l~A~D~~tG~~l  507 (599)
T 1w6s_A          453 GQIKAYNAITGDYKWEKME--RFAVWGGTMATAGDLVFYG-TLDG----------------YLKARDSDTGDLL  507 (599)
T ss_dssp             EEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEE-CTTS----------------EEEEEETTTCCEE
T ss_pred             CeEEEEECCCCCEEeEecC--CCCccCcceEecCCEEEEE-CCCC----------------eEEEEECCCCCEE
Confidence            5788999988875422221  1111111233345555553 3332                5999999988764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.21  E-value=0.044  Score=56.21  Aligned_cols=146  Identities=14%  Similarity=0.159  Sum_probs=76.8

Q ss_pred             ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceE-Eeecc----cCCCCcccCcEEcCC---CCEEEEEEeeCCC
Q 004971          322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFI-ELTRF----VSPKTHHLNPFISPD---SSRVGYHKCRGGS  393 (721)
Q Consensus       322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~-~l~~~----~~~~~~~~~~~~Spd---g~~l~~~~~~~~~  393 (721)
                      ...++|.| ||++|++. ...    ..|++++.. ++.. .+...    .........++++||   +.+|++.......
T Consensus        20 P~~i~~~p-dG~~l~V~-e~~----G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~   92 (353)
T 2g8s_A           20 PWALAFLP-DNHGMLIT-LRG----GELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGD   92 (353)
T ss_dssp             EEEEEECS-TTCCEEEE-ETT----TEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECS
T ss_pred             cEEEEEcC-CCCEEEEE-eCC----ceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCC
Confidence            35788999 99855443 332    358888864 3321 12111    011223457899997   6777765433210


Q ss_pred             CCCCCcceeEEEeccCCCC-----c-c-eecc------cCCCCceeCcCCCEEEEEe-C--------------CcEEEEE
Q 004971          394 TREDGNNQLLLENIKSPLP-----D-I-SLFR------FDGSFPSFSPKGDRIAFVE-F--------------PGVYVVN  445 (721)
Q Consensus       394 ~~~~~~~~l~~~~~~~~~~-----~-~-~~~~------~~~~~~~~SpDG~~la~~~-~--------------~~l~v~d  445 (721)
                      ... ...++...++.....     + + ...+      .....++|+||| +|++.. +              +.|+.++
T Consensus        93 ~g~-~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~  170 (353)
T 2g8s_A           93 DGK-AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLT  170 (353)
T ss_dssp             SSC-EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred             CCC-ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence            000 002344444332210     0 0 1111      123468999999 666662 1              3689999


Q ss_pred             CCCC-------------ceEEEe--ecCceeeEEcCCCCeEEEEec
Q 004971          446 SDGS-------------NRRQVY--FKNAFSTVWDPVREAVVYTSG  476 (721)
Q Consensus       446 ~~~g-------------~~~~l~--~~~~~~~~~spdg~~la~~~~  476 (721)
                      .++.             ......  -.....++|.|+...|+++..
T Consensus       171 ~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~  216 (353)
T 2g8s_A          171 DQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEH  216 (353)
T ss_dssp             TTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEE
T ss_pred             CCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEec
Confidence            8865             222222  234667899996556777654

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=97.15  E-value=0.11  Score=58.24  Aligned_cols=255  Identities=9%  Similarity=-0.023  Sum_probs=141.1

Q ss_pred             CcE-EcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC---CcceecccCC--------CCceeCcCCCEEEEEe----
Q 004971          374 NPF-ISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL---PDISLFRFDG--------SFPSFSPKGDRIAFVE----  437 (721)
Q Consensus       374 ~~~-~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~--------~~~~~SpDG~~la~~~----  437 (721)
                      +.. ++||++++++.-..++...    ..+...++.++.   ..+. .....        ..++|- |+..+++..    
T Consensus       133 g~~~~~~~~~~~~~~ls~~G~d~----~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~  206 (711)
T 4hvt_A          133 GVSNCFQNPNRYLISMSFGGKDE----MFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHK  206 (711)
T ss_dssp             EEEECSSSTTEEEEEEEETTCSE----EEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEE-ETTEEEECCCCST
T ss_pred             ceeecCCCCCEEEEEeCCCCCce----eEEEEEECCcCCcCCCCcc-cccccccccccccceeeEE-CCCEEEEEeCCCC
Confidence            344 8999999999877776431    456667776551   1111 11111        334886 445565541    


Q ss_pred             --------CCcEEEEECCCCc--eEEEeec----CceeeEEcCCCCe----EEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971          438 --------FPGVYVVNSDGSN--RRQVYFK----NAFSTVWDPVREA----VVYTSGGPEFASESSEVDIISINVDDVDG  499 (721)
Q Consensus       438 --------~~~l~v~d~~~g~--~~~l~~~----~~~~~~~spdg~~----la~~~~~~~~~~~~~~~~i~~~~~~~~~~  499 (721)
                              ...++.+.+-+..  -+.++.+    .......++|+++    +++...     .......+|.++.+..  
T Consensus       207 ~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~~~~~~~~~--  279 (711)
T 4hvt_A          207 NEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISAN-----KDFYNYDNYILDTKYK--  279 (711)
T ss_dssp             TCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEE-----SSSSCEEEEEEECSSS--
T ss_pred             CCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEe-----cccCceeEEEEcCCCC--
Confidence                    2458888876543  3445521    1224556778874    333321     1223467777765421  


Q ss_pred             ccceEEcccCCCCCcceEEccCCCEEEEEEee-------CCceeEEEEECCCCcc-----cceEE-CcCC-CcCceeeEE
Q 004971          500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTR-------TGYKNLYIMDAEGGEG-----YGLHR-LTEG-PWSDTMCNW  565 (721)
Q Consensus       500 ~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~-------~g~~~l~~~d~~~g~~-----~~~~~-l~~~-~~~~~~~~~  565 (721)
                      .++..+|....  ...+..+++++.++.....       -...+|+.+|++++..     ...+. ++.. ...+..+.|
T Consensus       280 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  357 (711)
T 4hvt_A          280 NLKLQKINMPS--DATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFIST  357 (711)
T ss_dssp             SCEEEECCSCT--TCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEE
T ss_pred             CCcceEeecCC--cceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEE
Confidence            01445553322  2234566666544433211       1355799999876421     11333 3332 334556777


Q ss_pred             ccCCCEEEEEEccCCCCCCceeEEEEecCCCc--eEE-eeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCC
Q 004971          566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG--LRK-LIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQY  642 (721)
Q Consensus       566 SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~--~~~-l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~  642 (721)
                      ..|  +|++...+.    +...|+++++.+++  .+. +... ..+.+.....++++..+++.......           
T Consensus       358 ~~~--~l~~~~~~~----~~~~l~~~~~~~g~~~~~~~i~lp-~~~~~~~~~~~~~~~~~~~~~ss~~~-----------  419 (711)
T 4hvt_A          358 TKD--RVFLATYDN----VVAKVVTFTLENEQWTKPVVLKLP-YQNAIFGMSSYEEEEEALITIENSIV-----------  419 (711)
T ss_dssp             CSS--CEEEEEEET----TEEEEEEECEETTEECCCEEECCC-STTCEEEEECCTTCSCEEEEEECSSS-----------
T ss_pred             ECC--EEEEEEEEC----CEEEEEEEECCCCceEEEeccCCC-CCeEEEEEeecCcCCEEEEEEecCCC-----------
Confidence            765  566666553    67789999987763  344 3221 12344455667888877776654433           


Q ss_pred             CCCccEEEEEcCCCCeEEeccC
Q 004971          643 QPYGEIFKIKLDGSDLKRLTQN  664 (721)
Q Consensus       643 ~~~~~l~~~d~~~~~~~~lt~~  664 (721)
                        ++.+|.+|+. ++.+.|+..
T Consensus       420 --P~~~~~~d~~-~~~~~l~~~  438 (711)
T 4hvt_A          420 --PPTIYLWVKT-HELKIIRKA  438 (711)
T ss_dssp             --CCEEEEECTT-SCEEEEECC
T ss_pred             --CCEEEEEeCC-CcEEEEecC
Confidence              3579999988 777777763

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.13  E-value=0.018  Score=58.42  Aligned_cols=168  Identities=14%  Similarity=0.102  Sum_probs=92.5

Q ss_pred             EEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc----CCCcCceeeEEccC---CCEEEEEE
Q 004971          504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT----EGPWSDTMCNWSPD---GEWIAFAS  576 (721)
Q Consensus       504 ~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~----~~~~~~~~~~~SpD---G~~l~~~~  576 (721)
                      +.+...-.....++|.|||+.++....   ..+|++++.++++...+..+.    .+......++++||   +.+|++..
T Consensus        25 ~~va~gL~~P~~ia~~pdG~llVter~---~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y  101 (347)
T 3das_A           25 RTVATGLNSPWGLAPLPGGDLLVSSRD---EATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF  101 (347)
T ss_dssp             EEEECCCSSEEEEEECTTSCEEEEETT---TCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred             EEeecCCCCceEEEEcCCCcEEEEEec---CCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence            344444456778999999984443321   457999987766632233232    23444578999996   56777664


Q ss_pred             ccCCCCCCceeEEEEecCCC--------ceEEeee-cC--CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCC
Q 004971          577 DRDNPGSGSFEMYLIHPNGT--------GLRKLIQ-SG--SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPY  645 (721)
Q Consensus       577 ~~~~~~~~~~~i~~~d~~~~--------~~~~l~~-~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~  645 (721)
                      ...    ....|.++..+.+        +.+.+.. ..  .......+.|.|||+ |+++..+.+......   ..-...
T Consensus       102 t~~----~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~q---d~~~~~  173 (347)
T 3das_A          102 TSA----SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQ---DRKSLG  173 (347)
T ss_dssp             ECS----SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTT---CTTCST
T ss_pred             ecC----CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCcccc---CCCCCC
Confidence            432    2357999987652        2233322 11  122345699999996 565544433211000   001234


Q ss_pred             ccEEEEEcCCC--------CeEEeccCCCCCCCceecCC-cCCccc
Q 004971          646 GEIFKIKLDGS--------DLKRLTQNSFEDGTPAWGPR-FIRPVD  682 (721)
Q Consensus       646 ~~l~~~d~~~~--------~~~~lt~~~~~~~~~~~sp~-~l~~~~  682 (721)
                      +.|++++.+++        ........-......+|.|. .|+..+
T Consensus       174 G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d  219 (347)
T 3das_A          174 GKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             TCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEE
T ss_pred             CEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEe
Confidence            57999998876        22222222223456788875 344433

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.08  E-value=0.58  Score=52.39  Aligned_cols=78  Identities=12%  Similarity=0.008  Sum_probs=47.7

Q ss_pred             eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeE
Q 004971          535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY  614 (721)
Q Consensus       535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~  614 (721)
                      ..|+.||+.+|+.  +-+...+. ......++..|..|++...++       .|+.+|..+|+..-....+.......+.
T Consensus       438 g~l~A~D~~tG~~--~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg-------~l~a~d~~tG~~l~~~~~~~~~~~~p~~  507 (668)
T 1kv9_A          438 GALLAWDPVKQKA--AWKVPYPT-HWNGGTLSTAGNLVFQGTAAG-------QMHAYSADKGEALWQFEAQSGIVAAPMT  507 (668)
T ss_dssp             EEEEEEETTTTEE--EEEEEESS-SCCCCEEEETTTEEEEECTTS-------EEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred             ceEEEEeCCCCcE--EEEccCCC-CCcCceeEeCCCEEEEECCcc-------cchhhhhhcChhheEecCCCCcccCceE
Confidence            6799999999984  22222221 123345566777777775553       8999999999866444332222223455


Q ss_pred             ECCCCCEE
Q 004971          615 FSPDGKSI  622 (721)
Q Consensus       615 ~SpDG~~l  622 (721)
                      +..||+..
T Consensus       508 ~~~~G~~y  515 (668)
T 1kv9_A          508 FELAGRQY  515 (668)
T ss_dssp             EEETTEEE
T ss_pred             EEECCEEE
Confidence            66788743

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.07  E-value=0.13  Score=51.31  Aligned_cols=164  Identities=9%  Similarity=-0.024  Sum_probs=100.3

Q ss_pred             CCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe-ec---------CceeeEE---cCCCCeEEEEecCCCCCCC--
Q 004971          421 GSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY-FK---------NAFSTVW---DPVREAVVYTSGGPEFASE--  483 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~-~~---------~~~~~~~---spdg~~la~~~~~~~~~~~--  483 (721)
                      ...+.|.+...++++.+  .+.|..|+..++....+. .+         .+..+.|   .|+|+.+++...+..+...  
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            44579988777787775  789999999877654544 22         1357889   6886665544323223221  


Q ss_pred             --CCcEEEEEEEcc---CCCCccceEEccc---C-------C-CCCcceEEccCCCEEEEEEeeCCc-eeEEEEECCCCc
Q 004971          484 --SSEVDIISINVD---DVDGVSAVRRLTT---N-------G-KNNAFPSVSPDGKWIVFRSTRTGY-KNLYIMDAEGGE  546 (721)
Q Consensus       484 --~~~~~i~~~~~~---~~~~~~~~~~l~~---~-------~-~~~~~~~~SpDg~~l~~~s~~~g~-~~l~~~d~~~g~  546 (721)
                        .+...|..+++.   ++ .......|..   .       . .....++..++|+..+..+.   . ..|++++.++..
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg-~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~---~~~~I~rV~pdG~~  170 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENS-KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL---GMPAIARVSADGKT  170 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTC-CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE---SSCEEEEECTTSCC
T ss_pred             ccCCCCEEEEEcCCcCCCC-CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC---CCCeEEEEeCCCCE
Confidence              235667777766   22 0011122221   1       1 13456889999996665554   4 779999998654


Q ss_pred             ccceEECcCC----CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971          547 GYGLHRLTEG----PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       547 ~~~~~~l~~~----~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                      .. ...+...    ....+.+++.|||+.|+.....+       .|+.+|+...
T Consensus       171 ~~-~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g-------~L~~fD~~~p  216 (334)
T 2p9w_A          171 VS-TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPR-------ALTAFDVSKP  216 (334)
T ss_dssp             EE-EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSS-------SEEEEECSSS
T ss_pred             Ee-eeeecCCCcccccCcceEEEeCCCCEEEEEcCCC-------eEEEEcCCCC
Confidence            21 1111111    11246899999999888887643       8999998843

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.05  E-value=0.01  Score=60.99  Aligned_cols=142  Identities=13%  Similarity=0.087  Sum_probs=79.6

Q ss_pred             eEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc---CCCcCceeeEEccC---CCEEEEEE
Q 004971          503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT---EGPWSDTMCNWSPD---GEWIAFAS  576 (721)
Q Consensus       503 ~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~---~~~~~~~~~~~SpD---G~~l~~~~  576 (721)
                      .+.+...-.....++|.|||+ |+++..   ...|++++  +++...+..+.   .+......++|+||   +++|+++.
T Consensus        23 ~~~va~~l~~P~~ia~~pdG~-l~V~e~---~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~   96 (352)
T 2ism_A           23 VEEVVGGLEVPWALAFLPDGG-MLIAER---PGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYR   96 (352)
T ss_dssp             EEEEECCCSCEEEEEECTTSC-EEEEET---TTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred             EEEEECCCCCceEEEEcCCCe-EEEEeC---CCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEE
Confidence            334444334567889999998 544443   36899998  44432222222   22334578999999   77888776


Q ss_pred             ccCCCCCCceeEEEEecCCCc---eEEeee-cC----CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccE
Q 004971          577 DRDNPGSGSFEMYLIHPNGTG---LRKLIQ-SG----SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI  648 (721)
Q Consensus       577 ~~~~~~~~~~~i~~~d~~~~~---~~~l~~-~~----~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  648 (721)
                      ..... .....|++++.++++   .+.+.. ..    .......++|+|||. |+++..+.+......   ......+.|
T Consensus        97 ~~~~~-~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~---d~~~~~g~I  171 (352)
T 2ism_A           97 TVAEG-GLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQ---DLASLGGKI  171 (352)
T ss_dssp             EECTT-SSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGG---CTTCSSSEE
T ss_pred             ecCCC-CCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCcccc---CCCCCceEE
Confidence            53200 012579999987652   222222 11    112346899999994 666654332210000   001123579


Q ss_pred             EEEEcCC
Q 004971          649 FKIKLDG  655 (721)
Q Consensus       649 ~~~d~~~  655 (721)
                      ++++.++
T Consensus       172 ~ri~~dG  178 (352)
T 2ism_A          172 LRLTPEG  178 (352)
T ss_dssp             EEECTTS
T ss_pred             EEEcCCC
Confidence            9999887

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.03  E-value=0.12  Score=58.09  Aligned_cols=145  Identities=13%  Similarity=0.107  Sum_probs=75.1

Q ss_pred             CcceEeecCCCCCccccccCC-CCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEec---cCCc---ceeccC
Q 004971          205 TGLTRRLTPYGVADFSPAVSP-SGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVE---NGGW---PCWVDE  277 (721)
Q Consensus       205 ~g~~~~lt~~~~~~~~p~~SP-DG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~---~~~~---~~ws~d  277 (721)
                      .++-..+.+.+......++.| +|+.+++.........+. ......++++|+.+++-+++..-   ....   .++..|
T Consensus       175 ~~~W~~~~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~-~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~  253 (656)
T 1k3i_A          175 LGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGS-PGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN  253 (656)
T ss_dssp             SCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSC-CCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT
T ss_pred             CCeeeeeccCCCCceeEEEEecCCEEEEEecccccccccC-CCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCC
Confidence            444444444333334446777 888888865432211110 11234799999999886655422   1111   356688


Q ss_pred             CeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCC--CCcccCceeecCCCCEEEEEEe-cCCCCeeeEEEEEC
Q 004971          278 STLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPP--GLHAFTPATSPGNNKFIAVATR-RPTSSYRHIELFDL  354 (721)
Q Consensus       278 g~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sp~dG~~la~~~~-~~g~~~~~l~l~dl  354 (721)
                      |++|+..-.. ...+.+|+   +...       ...++...  .......++.+ ||+.+++... ..+.....+++||+
T Consensus       254 g~lyv~GG~~-~~~v~~yd---~~t~-------~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~  321 (656)
T 1k3i_A          254 GQIVVTGGND-AKKTSLYD---SSSD-------SWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSP  321 (656)
T ss_dssp             SCEEEECSSS-TTCEEEEE---GGGT-------EEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             CCEEEeCCCC-CCceEEec---CcCC-------ceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCC
Confidence            8987743222 23444553   2221       33333322  11223345667 8886666331 11112356899999


Q ss_pred             CCCceEEe
Q 004971          355 VKNKFIEL  362 (721)
Q Consensus       355 ~tg~~~~l  362 (721)
                      .+++...+
T Consensus       322 ~t~~W~~~  329 (656)
T 1k3i_A          322 SSKTWTSL  329 (656)
T ss_dssp             TTTEEEEE
T ss_pred             CCCcceeC
Confidence            98876555

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.03  E-value=0.3  Score=49.36  Aligned_cols=233  Identities=15%  Similarity=0.126  Sum_probs=114.1

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc----cCCCCcccCcEEcCC---CCEEEEEEeeCCC
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF----VSPKTHHLNPFISPD---SSRVGYHKCRGGS  393 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~----~~~~~~~~~~~~Spd---g~~l~~~~~~~~~  393 (721)
                      ....++|.| ||+. ++. .+   ....|++++..+++...+...    .........++++||   ..+|++.-.....
T Consensus        33 ~P~~ia~~p-dG~l-lVt-er---~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           33 SPWGLAPLP-GGDL-LVS-SR---DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             SEEEEEECT-TSCE-EEE-ET---TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             CceEEEEcC-CCcE-EEE-Ee---cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            446788999 9974 343 33   123488888776665444321    112334567899996   4566553221111


Q ss_pred             CCCCCcceeEEEeccCC--------CCcc--eecc----cCCCCceeCcCCCEEEEE-e--------------CCcEEEE
Q 004971          394 TREDGNNQLLLENIKSP--------LPDI--SLFR----FDGSFPSFSPKGDRIAFV-E--------------FPGVYVV  444 (721)
Q Consensus       394 ~~~~~~~~l~~~~~~~~--------~~~~--~~~~----~~~~~~~~SpDG~~la~~-~--------------~~~l~v~  444 (721)
                            .++....+...        ..+.  ...+    .....+.|.|||. |++. +              .+.|+.+
T Consensus       107 ------~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi  179 (347)
T 3das_A          107 ------NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRM  179 (347)
T ss_dssp             ------EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred             ------CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEE
Confidence                  34444444331        0010  1111    1234589999995 5554 2              3678888


Q ss_pred             ECCCC--------ceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccc------------
Q 004971          445 NSDGS--------NRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA------------  502 (721)
Q Consensus       445 d~~~g--------~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------  502 (721)
                      +.++.        ......  -.....++|.|+|+ |+++..+.     +..-+|..+...+.-+...            
T Consensus       180 ~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~-----~~~deln~i~~G~nyGwP~~~g~~~~~~~~~  253 (347)
T 3das_A          180 TPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQ-----DTWDELNAIKPGDNYGWPEAEGKGGGSGFHD  253 (347)
T ss_dssp             CTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCS-----SSCEEEEEECTTCBCCTTTCCSSCCCTTCCC
T ss_pred             eCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCC-----CCCceeeEEcCCCEecCCcccCCCCCccccC
Confidence            88765        222222  23466899999865 55554332     2223444443322100000            


Q ss_pred             -eEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc-cc-eEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971          503 -VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG-YG-LHRLTEGPWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       503 -~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~-~~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~  577 (721)
                       ...+..+......++|. +| .++....+  ..+|+++.++.+.. .. ...+.........++..|||. |+++..
T Consensus       254 P~~~~~~~~~ap~G~~~~-~g-~~~~~~l~--~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~-lyv~td  326 (347)
T 3das_A          254 PVAQWSTDEASPSGIAYA-EG-SVWMAGLR--GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDK-LWLVTS  326 (347)
T ss_dssp             CSEEECTTTCCEEEEEEE-TT-EEEEEEST--TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTE-EEEEEC
T ss_pred             CcEecCCCCCCCcceEEE-cC-ceeecccc--CCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCc-EEEEEc
Confidence             00010000111223343 23 23333332  45788887765431 11 223333335567889999996 444443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.99  E-value=0.015  Score=59.27  Aligned_cols=123  Identities=15%  Similarity=0.059  Sum_probs=72.9

Q ss_pred             CCcceEEcc--CCC-EEEEEEeeCC--ceeEEEEECCCCcccceEECcCCC-cCceeeEEccCCCEEEEEEcc--CC---
Q 004971          512 NNAFPSVSP--DGK-WIVFRSTRTG--YKNLYIMDAEGGEGYGLHRLTEGP-WSDTMCNWSPDGEWIAFASDR--DN---  580 (721)
Q Consensus       512 ~~~~~~~Sp--Dg~-~l~~~s~~~g--~~~l~~~d~~~g~~~~~~~l~~~~-~~~~~~~~SpDG~~l~~~~~~--~~---  580 (721)
                      ....+.+.+  ||+ +|++.....+  ...|+.++..++....+..+.... ...+.+.+.++|+ ++++...  ..   
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~  191 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYL  191 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHH
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCccc
Confidence            344456555  566 5555555422  336777887766533333333222 2357889999997 4444321  00   


Q ss_pred             ------CCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971          581 ------PGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD  654 (721)
Q Consensus       581 ------~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  654 (721)
                            .......||+++..  +.+.+..  .-...+.++|||||++||++.....                .||+++++
T Consensus       192 ~~~e~~~~~~~g~vyr~d~~--~~~~~~~--~l~~pNGia~spDg~~lYvadt~~~----------------~I~~~~~~  251 (355)
T 3sre_A          192 KSWEMHLGLAWSFVTYYSPN--DVRVVAE--GFDFANGINISPDGKYVYIAELLAH----------------KIHVYEKH  251 (355)
T ss_dssp             HHHHHHTTCCCEEEEEECTT--CCEEEEE--EESSEEEEEECTTSSEEEEEEGGGT----------------EEEEEEEC
T ss_pred             ccchhhccCCccEEEEEECC--eEEEeec--CCcccCcceECCCCCEEEEEeCCCC----------------eEEEEEEC
Confidence                  00123579999873  5554443  2234678999999999999887653                49999986


Q ss_pred             C
Q 004971          655 G  655 (721)
Q Consensus       655 ~  655 (721)
                      .
T Consensus       252 ~  252 (355)
T 3sre_A          252 A  252 (355)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.97  E-value=0.64  Score=51.02  Aligned_cols=82  Identities=13%  Similarity=0.013  Sum_probs=46.9

Q ss_pred             ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCe
Q 004971          534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHP  613 (721)
Q Consensus       534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~  613 (721)
                      ...|+.||+.+|+.  +-+...... .........|..|+++..++       .|+.+|.++|+..--...+.......+
T Consensus       465 ~G~l~A~D~~tG~~--~W~~~~~~~-~~~g~~~tagglvf~g~~dg-------~l~A~D~~tG~~lW~~~~~~g~~a~P~  534 (582)
T 1flg_A          465 VGSLRAMDPVSGKV--VWEHKEHLP-LWAGVLATAGNLVFTGTGDG-------YFKAFDAKSGKELWKFQTGSGIVSPPI  534 (582)
T ss_dssp             SEEEEEECTTTCCE--EEEEEESSC-CCSCCEEETTTEEEEECTTS-------EEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred             cceEEEEECCCCCE--EEEecCCCC-CcccceEeCCCEEEEECCCC-------cEEEEECCCCCEEEEecCCCCcccCce
Confidence            46799999999984  222222211 12222233456666665553       899999999986544433222222346


Q ss_pred             EECCCCCEEEEE
Q 004971          614 YFSPDGKSIVFT  625 (721)
Q Consensus       614 ~~SpDG~~l~~~  625 (721)
                      .|+.||+..+..
T Consensus       535 ~y~~~G~qYv~~  546 (582)
T 1flg_A          535 TWEQDGEQYLGV  546 (582)
T ss_dssp             EEEETTEEEEEE
T ss_pred             EEEECCEEEEEE
Confidence            677899754443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.93  E-value=0.73  Score=51.60  Aligned_cols=58  Identities=10%  Similarity=0.064  Sum_probs=35.8

Q ss_pred             eeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-Eec
Q 004971          586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLT  662 (721)
Q Consensus       586 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt  662 (721)
                      ..|+.||+.+|+..=-...  ........++..|..|++.+ .++                .|+++|.++++.. ++.
T Consensus       438 g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~vf~g~-~dg----------------~l~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGNLVFQGT-AAG----------------QMHAYSADKGEALWQFE  496 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEEC-TTS----------------EEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCcEEEEccC--CCCCcCceeEeCCCEEEEEC-Ccc----------------cchhhhhhcChhheEec
Confidence            5799999999875422221  12233345556677776653 222                5999999888764 443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.89  E-value=0.076  Score=59.61  Aligned_cols=268  Identities=9%  Similarity=-0.025  Sum_probs=130.2

Q ss_pred             eeEEEEECCCCceEEeecccCC-CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec---cc-C-
Q 004971          347 RHIELFDLVKNKFIELTRFVSP-KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF---RF-D-  420 (721)
Q Consensus       347 ~~l~l~dl~tg~~~~l~~~~~~-~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~-~-  420 (721)
                      ..+++||+.+++.+.+.....+ .......++..+|+.+++.....        ..+++.+....  .....   .. . 
T Consensus       219 ~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~--------~~v~~yd~~t~--~W~~~~~~~~~R~  288 (656)
T 1k3i_A          219 TLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA--------KKTSLYDSSSD--SWIPGPDMQVARG  288 (656)
T ss_dssp             EEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST--------TCEEEEEGGGT--EEEECCCCSSCCS
T ss_pred             EEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCC--------CceEEecCcCC--ceeECCCCCcccc
Confidence            3689999999886655432211 11122256778887666643222        24666665433  11111   00 0 


Q ss_pred             CCCceeCcCCCEEEEEeC-------CcEEEEECCCCceEEEee-------cCceeeEEcCCCCeEEEEecCCCCCCCCCc
Q 004971          421 GSFPSFSPKGDRIAFVEF-------PGVYVVNSDGSNRRQVYF-------KNAFSTVWDPVREAVVYTSGGPEFASESSE  486 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~~~-------~~l~v~d~~~g~~~~l~~-------~~~~~~~~spdg~~la~~~~~~~~~~~~~~  486 (721)
                      ....+..+||+.+++.+.       ..+++||..+.+...+..       .......+..+++..++.............
T Consensus       289 ~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~  368 (656)
T 1k3i_A          289 YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS  368 (656)
T ss_dssp             SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS
T ss_pred             ccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCc
Confidence            112345578887666541       569999999887766521       000112233455554444311000000111


Q ss_pred             EEEEEEEccCCCCccceEEcccCCC---------CCcceEEc-cCCCEEEEEEeeC--C---ce---eEEEEECCCCccc
Q 004971          487 VDIISINVDDVDGVSAVRRLTTNGK---------NNAFPSVS-PDGKWIVFRSTRT--G---YK---NLYIMDAEGGEGY  548 (721)
Q Consensus       487 ~~i~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~S-pDg~~l~~~s~~~--g---~~---~l~~~d~~~g~~~  548 (721)
                      ..++.++....   .....+.....         ......|. .+++.+++.....  +   ..   .|+++|..+.+-.
T Consensus       369 ~~v~~yd~~~~---~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~  445 (656)
T 1k3i_A          369 TAMNWYYTSGS---GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT  445 (656)
T ss_dssp             SEEEEEECSTT---CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEE
T ss_pred             cceeeeecCCc---ceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCee
Confidence            23333443332   11111111110         11122232 3666555554211  0   11   6888888877631


Q ss_pred             ceE--ECcCCCcCceeeEEccCCCEEEEEEccCCC----CCCceeEEEEecCCCceEEeeecCCCCCcC-CeEECCCCCE
Q 004971          549 GLH--RLTEGPWSDTMCNWSPDGEWIAFASDRDNP----GSGSFEMYLIHPNGTGLRKLIQSGSAGRAN-HPYFSPDGKS  621 (721)
Q Consensus       549 ~~~--~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~----~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~~~SpDG~~  621 (721)
                      .+.  .+... ......+..|||+.+++.......    ......+++||..+++-+.+.......... ...+.|||+.
T Consensus       446 ~~~~~~mp~~-R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v  524 (656)
T 1k3i_A          446 VFASNGLYFA-RTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRV  524 (656)
T ss_dssp             EECTTCCSSC-CBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCE
T ss_pred             EEccCCCCCC-cccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEE
Confidence            111  11211 112345677899988877643110    011357899999888766654332222223 3457899998


Q ss_pred             EEEEEec
Q 004971          622 IVFTSDY  628 (721)
Q Consensus       622 l~~~~~~  628 (721)
                      +++.+..
T Consensus       525 ~v~GG~~  531 (656)
T 1k3i_A          525 FNGGGGL  531 (656)
T ss_dssp             EEEECCC
T ss_pred             EecCCCC
Confidence            8887753

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.86  E-value=0.18  Score=50.03  Aligned_cols=156  Identities=6%  Similarity=-0.101  Sum_probs=78.9

Q ss_pred             EEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeC--CceeEEEEECCCCcccceEECcCCCcCceee
Q 004971          487 VDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRT--GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC  563 (721)
Q Consensus       487 ~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~--g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~  563 (721)
                      ..++.++....    ....+.... ....+.+..-+++.+++.....  ....++++|+.+.+-..+..+......  ..
T Consensus       128 ~~~~~~d~~~~----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~  201 (301)
T 2vpj_A          128 TSMERYDPNID----QWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSG--AG  201 (301)
T ss_dssp             CEEEEEETTTT----EEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBS--CE
T ss_pred             ceEEEEcCCCC----eEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccccc--ce
Confidence            35666666543    344443332 2222333344665444443221  135799999998874222222222211  12


Q ss_pred             EEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCC
Q 004971          564 NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQ  643 (721)
Q Consensus       564 ~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~  643 (721)
                      +..-+++.++++.....  .....+++||+.+.+-..+... ...........-+++.+++.......            
T Consensus       202 ~~~~~~~i~v~GG~~~~--~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~~i~v~GG~~~~~------------  266 (301)
T 2vpj_A          202 VALLNDHIYVVGGFDGT--AHLSSVEAYNIRTDSWTTVTSM-TTPRCYVGATVLRGRLYAIAGYDGNS------------  266 (301)
T ss_dssp             EEEETTEEEEECCBCSS--SBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEEETTEEEEECCBCSSS------------
T ss_pred             EEEECCEEEEEeCCCCC--cccceEEEEeCCCCcEEECCCC-CCcccceeEEEECCEEEEEcCcCCCc------------
Confidence            22235554444443321  1135799999999887766533 22223333333466655544332211            


Q ss_pred             CCccEEEEEcCCCCeEEecc
Q 004971          644 PYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       644 ~~~~l~~~d~~~~~~~~lt~  663 (721)
                      ...+++++|+++.+.+.+..
T Consensus       267 ~~~~v~~yd~~~~~W~~~~~  286 (301)
T 2vpj_A          267 LLSSIECYDPIIDSWEVVTS  286 (301)
T ss_dssp             BEEEEEEEETTTTEEEEEEE
T ss_pred             ccccEEEEcCCCCeEEEcCC
Confidence            12469999999988777753

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.76  E-value=0.052  Score=54.07  Aligned_cols=164  Identities=9%  Similarity=0.070  Sum_probs=97.7

Q ss_pred             CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC--------CCCcceEE---ccCCCEEE
Q 004971          458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG--------KNNAFPSV---SPDGKWIV  526 (721)
Q Consensus       458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~---SpDg~~l~  526 (721)
                      ....+.|.+...++++.+.      ..+.  |+.++..++    ....+....        .....+.|   .|+|+.++
T Consensus        14 yPE~~~wd~~~g~~~vs~l------~~g~--V~~~~~~~~----~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~v   81 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNL------YKGR--IEVYNPKTQ----SHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFA   81 (334)
T ss_dssp             CCSCEEEETTTTEEEEEET------TTTE--EEEECTTTC----CEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEE
T ss_pred             CCcCccCcCCCCEEEEEec------cCCE--EEEEcCCCC----eEEEEecCCccccCCCcceeeEEEEeccCCCCcEEE
Confidence            4567899888888888763      2333  444444432    222221111        12356788   68876666


Q ss_pred             EEEe----------eCCceeEEEEECC---CCcccceEECcC-----------CCcCceeeEEccCCCEEEEEEccCCCC
Q 004971          527 FRST----------RTGYKNLYIMDAE---GGEGYGLHRLTE-----------GPWSDTMCNWSPDGEWIAFASDRDNPG  582 (721)
Q Consensus       527 ~~s~----------~~g~~~l~~~d~~---~g~~~~~~~l~~-----------~~~~~~~~~~SpDG~~l~~~~~~~~~~  582 (721)
                      +...          ..+...|.++|+.   +++......|..           .......++..++|+.-+..+..    
T Consensus        82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~----  157 (334)
T 2p9w_A           82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG----  157 (334)
T ss_dssp             EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES----
T ss_pred             EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCC----
Confidence            5331          0245789999999   676422233321           11235789999999844434433    


Q ss_pred             CCceeEEEEecCCCceEEeeecC----CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971          583 SGSFEMYLIHPNGTGLRKLIQSG----SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       583 ~~~~~i~~~d~~~~~~~~l~~~~----~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~  656 (721)
                        ...|++++.++..........    .......+++.|||+.|+.... .+                +|+.+|++..
T Consensus       158 --~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g----------------~L~~fD~~~p  216 (334)
T 2p9w_A          158 --MPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PR----------------ALTAFDVSKP  216 (334)
T ss_dssp             --SCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SS----------------SEEEEECSSS
T ss_pred             --CCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CC----------------eEEEEcCCCC
Confidence              027999999887544332211    1123568999999999887665 33                4999998743

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.73  E-value=0.012  Score=60.52  Aligned_cols=137  Identities=12%  Similarity=0.082  Sum_probs=75.5

Q ss_pred             CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC----cCCCcCceeeEEccC---CCEEEEEEccCCCCCC
Q 004971          512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL----TEGPWSDTMCNWSPD---GEWIAFASDRDNPGSG  584 (721)
Q Consensus       512 ~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l----~~~~~~~~~~~~SpD---G~~l~~~~~~~~~~~~  584 (721)
                      ....++|.|||++|+++..   ..+|++++.++.....+..+    ..+......++|+||   +.+|+++...... .+
T Consensus        19 ~P~~i~~~pdG~~l~V~e~---~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~-~g   94 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLR---GGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGD-DG   94 (353)
T ss_dssp             SEEEEEECSTTCCEEEEET---TTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECS-SS
T ss_pred             CcEEEEEcCCCCEEEEEeC---CceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCC-CC
Confidence            5677899999995554443   46899998653221111111    122233467899997   7778777543100 01


Q ss_pred             --ceeEEEEecCCC-----ceEEeeecCC-----CCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEE
Q 004971          585 --SFEMYLIHPNGT-----GLRKLIQSGS-----AGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIK  652 (721)
Q Consensus       585 --~~~i~~~d~~~~-----~~~~l~~~~~-----~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d  652 (721)
                        ...|++++.+.+     ..+.+.....     ......+.|+||| +|+++..+.+....  .. ..-...+.|++++
T Consensus        95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~--~q-~~~~~~g~I~ri~  170 (353)
T 2g8s_A           95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPT--AQ-DLDKLQGKLVRLT  170 (353)
T ss_dssp             CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGG--GG-CTTSCTTEEEEEE
T ss_pred             CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCc--cC-CCCCCCeEEEEEC
Confidence              357888887654     2222322111     1224579999999 67776654432100  00 0011234699999


Q ss_pred             cCCC
Q 004971          653 LDGS  656 (721)
Q Consensus       653 ~~~~  656 (721)
                      .+++
T Consensus       171 ~dG~  174 (353)
T 2g8s_A          171 DQGE  174 (353)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            8875

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.69  E-value=0.71  Score=47.49  Aligned_cols=235  Identities=12%  Similarity=0.125  Sum_probs=130.0

Q ss_pred             CCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC
Q 004971          332 NKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL  411 (721)
Q Consensus       332 G~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  411 (721)
                      .++|...  ...++..++.+.|+..+... ...    ..........|..+.|+.- .  +       ..+.+.++....
T Consensus        35 DkyicVr--E~~~~~~~vvIiDl~~~~~~-~rr----pi~AdsAIMnP~~~iiALr-a--g-------~~lQiFnle~K~   97 (494)
T 1bpo_A           35 DKFICIR--EKVGEQAQVVIIDMNDPSNP-IRR----PISADSAIMNPASKVIALK-A--G-------KTLQIFNIEMKS   97 (494)
T ss_dssp             TTEEEEE--ECCTTCCEEEEEETTSTTSC-EEE----ECCCSEEEECSSSSCEEEE-E--T-------TEEEEEETTTTE
T ss_pred             CceEEEE--ecCCCCCeEEEEECCCCCcc-eec----ccccceeeeCCCCcEEEEe-c--C-------CeEEEEchHHhh
Confidence            3565553  22335558999999987532 111    1112234556777766664 2  2       346666665542


Q ss_pred             C-cceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCC-ceEEEe-------ecCceeeEEcCCCCeEEEEecCCCCCC
Q 004971          412 P-DISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGS-NRRQVY-------FKNAFSTVWDPVREAVVYTSGGPEFAS  482 (721)
Q Consensus       412 ~-~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g-~~~~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~  482 (721)
                      + .-........+-.|-. .+.|+.+....+|.|++++. .+..++       ...+..+.-++|.++++.+.-...-..
T Consensus        98 klks~~~~e~VvfWkWis-~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~  176 (494)
T 1bpo_A           98 KMKAHTMTDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR  176 (494)
T ss_dssp             EEEEEECSSCCCEEEEEE-TTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTE
T ss_pred             hhcceecCCCceEEEecC-CCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCc
Confidence            1 1111223344445543 34799999999999999763 366666       234567889999999998753110001


Q ss_pred             CCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCC-----CEEEEEEeeCCceeEEEEECCCC---cc---cceE
Q 004971          483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG-----KWIVFRSTRTGYKNLYIMDAEGG---EG---YGLH  551 (721)
Q Consensus       483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg-----~~l~~~s~~~g~~~l~~~d~~~g---~~---~~~~  551 (721)
                      -.+...||.++..      ..+.+..+..  ....+-.+|     +.++|+.......+|.++++...   ..   +...
T Consensus       177 v~G~mQLYS~er~------~sQ~ieGhaa--~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~v  248 (494)
T 1bpo_A          177 VVGAMQLYSVDRK------VSQPIEGHAA--SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV  248 (494)
T ss_dssp             EEEEEEEEESTTC------CEEEECCSEE--EEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEE
T ss_pred             ccceEEEeecccc------ccchheeeee--eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceee
Confidence            1355666666542      3344444431  112232333     34555554434468999998543   11   1122


Q ss_pred             ECcCCC----cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971          552 RLTEGP----WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR  599 (721)
Q Consensus       552 ~l~~~~----~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~  599 (721)
                      .+...+    ...-.+..|+.=..|+.....+       .|++||+.++...
T Consensus       249 dv~fppe~~~DFPvamqvs~kygviyviTK~G-------~i~lyDleTgt~i  293 (494)
T 1bpo_A          249 DVFFPPEAQNDFPVAMQISEKHDVVFLITKYG-------YIHLYDLETGTCI  293 (494)
T ss_dssp             ECCCCTTSTTCCEEEEEEETTTTEEEEEETTS-------EEEEEETTTCCEE
T ss_pred             eeeCCcccccCceeEEEecccCCEEEEEecCc-------eEEEEecccceee
Confidence            332221    1123456787766676666554       8999999998654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.64  E-value=0.0028  Score=65.76  Aligned_cols=164  Identities=9%  Similarity=-0.062  Sum_probs=69.1

Q ss_pred             eCcCCCEEEEE-eCCcEEEEECCCCceEEEee----cC-ceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971          426 FSPKGDRIAFV-EFPGVYVVNSDGSNRRQVYF----KN-AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG  499 (721)
Q Consensus       426 ~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~~----~~-~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~  499 (721)
                      +..+|+.++.. .++.|+.+|.++|+......    .. ...+..+ ++..|++.+         ..-.|+.++..++  
T Consensus        45 ~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~---------~dg~v~a~D~~tG--  112 (369)
T 2hz6_A           45 THVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGK---------KQDIWYVIDLLTG--  112 (369)
T ss_dssp             -----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCE---------EEEEEEEECCC----
T ss_pred             eEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEe---------CCCEEEEEECCCC--
Confidence            34566544443 47889999998776432221    11 1122222 233444332         2334566665432  


Q ss_pred             ccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCC---CEEEEEE
Q 004971          500 VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDG---EWIAFAS  576 (721)
Q Consensus       500 ~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG---~~l~~~~  576 (721)
                       .....+....    ...++|++..|++.+.   +..|+.||..+|+.  +-......  ...+++++++   ..+++..
T Consensus       113 -~~~w~~~~~~----~~~~~p~~~~v~~~~~---dg~v~a~d~~tG~~--~W~~~~~~--~~~~~~~~~~~~~~~v~~~~  180 (369)
T 2hz6_A          113 -EKQQTLSSAF----ADSLSPSTSLLYLGRT---EYTITMYDTKTREL--RWNATYFD--YAASLPEDDVDYKMSHFVSN  180 (369)
T ss_dssp             -------------------------EEEEEE---EEEEECCCSSSSSC--CCEEEEEE--ECCBCCCCCTTCCCCEEEEE
T ss_pred             -cEEEEecCCC----cccccccCCEEEEEec---CCEEEEEECCCCCE--EEeEeccc--ccCccccCCccccceEEEEC
Confidence             1222222211    2356678888888776   67899999998874  22221111  1345555543   4566666


Q ss_pred             ccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCE
Q 004971          577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS  621 (721)
Q Consensus       577 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~  621 (721)
                      .++       .|+.+|..+|+..--... .......+.+++||..
T Consensus       181 ~dg-------~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          181 GDG-------LVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLR  217 (369)
T ss_dssp             TSC-------EEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCE
T ss_pred             CCC-------EEEEEECCCCcEEEEecC-CCceEEEEEecCCceE
Confidence            554       899999988875432221 1222234556777753

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.64  E-value=1.1  Score=49.08  Aligned_cols=58  Identities=5%  Similarity=-0.067  Sum_probs=32.6

Q ss_pred             eeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE-Eec
Q 004971          586 FEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK-RLT  662 (721)
Q Consensus       586 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~lt  662 (721)
                      ..|+.+|+.+|+..=-... . .....-.....|..|++. ..++                .|+.+|.++|++. +..
T Consensus       466 G~l~A~D~~tG~~~W~~~~-~-~~~~~g~~~tagglvf~g-~~dg----------------~l~A~D~~tG~~lW~~~  524 (582)
T 1flg_A          466 GSLRAMDPVSGKVVWEHKE-H-LPLWAGVLATAGNLVFTG-TGDG----------------YFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEE-S-SCCCSCCEEETTTEEEEE-CTTS----------------EEEEEETTTCCEEEEEE
T ss_pred             ceEEEEECCCCCEEEEecC-C-CCCcccceEeCCCEEEEE-CCCC----------------cEEEEECCCCCEEEEec
Confidence            5799999999875422221 1 122222222345555553 3332                5999999888764 443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.31  E-value=1.4  Score=46.70  Aligned_cols=138  Identities=15%  Similarity=0.130  Sum_probs=78.3

Q ss_pred             CCCcceEEccCCCEEEEEEeeCCceeEEEEECCC------Cc---c--cceEECcCCCcCceeeEEccCCCEEEEEEccC
Q 004971          511 KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG------GE---G--YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRD  579 (721)
Q Consensus       511 ~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~------g~---~--~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~  579 (721)
                      .....+..+|||++++.....  ..++.++|.+.      ++   .  ....++..+. ...+.+|.++|  .+|++.- 
T Consensus       323 ksPHGv~vsPDGkyi~v~GKL--sptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl-GPlHt~Fd~~G--~aYTtlf-  396 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKL--SPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL-GPLHTTFDGRG--NAYTTLF-  396 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTT--SSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS-CEEEEEECSSS--EEEEEET-
T ss_pred             CCCcceeeCCCCCEEEEcCCC--CCeEEEEEeehhhhhhhccccCcccceEeeccCCC-cccEEEECCCC--ceEeeee-
Confidence            355667999999999987654  55778888763      11   0  0112222222 23678999999  4555543 


Q ss_pred             CCCCCceeEEEEecCCC----------ceEEeeecCCCCCcCC------eEECCCCCEEEEEEecCCCcCCCCCCCCCCC
Q 004971          580 NPGSGSFEMYLIHPNGT----------GLRKLIQSGSAGRANH------PYFSPDGKSIVFTSDYGGISAEPISTPHQYQ  643 (721)
Q Consensus       580 ~~~~~~~~i~~~d~~~~----------~~~~l~~~~~~~~~~~------~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~  643 (721)
                          -..+|..|+++..          ....-... + ....+      -.-.|||+||+....-+..++-+ .+|.   
T Consensus       397 ----idSqvvkWni~~a~~~~~g~~~~~v~~k~dv-~-YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~-vGpl---  466 (638)
T 3sbq_A          397 ----IDSQVVKWNMEEAVRAYKGEKVNYIKQKLDV-H-YQPGHLHASLCETNEADGKWLVALSKFSKDRFLP-VGPL---  466 (638)
T ss_dssp             ----TTTEEEEEEHHHHHHHHTTCCCCCEEEEEEC-S-SCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCC-CSSS---
T ss_pred             ----ecceEEEEeccHHHHHhcCccCCeeeecccc-c-cCCcccccCCCccCCCCccEEEEecccccccCcC-CCCC---
Confidence                1248999998642          12211111 1 11222      23479999999877654332111 1111   


Q ss_pred             CCccEEEEEcCCCCeEEeccC
Q 004971          644 PYGEIFKIKLDGSDLKRLTQN  664 (721)
Q Consensus       644 ~~~~l~~~d~~~~~~~~lt~~  664 (721)
                      .+..-.++|+.|.+.+.|.++
T Consensus       467 ~pen~QlidIsGdkM~lv~D~  487 (638)
T 3sbq_A          467 HPENDQLIDISGDEMKLVHDG  487 (638)
T ss_dssp             CCEEEEEEECSSSSCEEEEEE
T ss_pred             CCCcceeEecCCCceEEEecC
Confidence            112355679999888888763

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.29  E-value=0.88  Score=45.33  Aligned_cols=211  Identities=8%  Similarity=-0.052  Sum_probs=109.5

Q ss_pred             EEEEEeCCcEEEEECCCCceEEEe-e---cCceeeEEcCCCCeEEEEecCC--CCCCCCCcEEEEEEEccCCCCccceEE
Q 004971          432 RIAFVEFPGVYVVNSDGSNRRQVY-F---KNAFSTVWDPVREAVVYTSGGP--EFASESSEVDIISINVDDVDGVSAVRR  505 (721)
Q Consensus       432 ~la~~~~~~l~v~d~~~g~~~~l~-~---~~~~~~~~spdg~~la~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~  505 (721)
                      .|++.+...++.+|+.+++..... +   ..........+++.+++.....  ..........+|.++....    ..+.
T Consensus         6 ~l~~~GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~----~W~~   81 (315)
T 4asc_A            6 LIFMISEEGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS----EWLG   81 (315)
T ss_dssp             EEEEEETTEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT----EEEE
T ss_pred             EEEEEcCCceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCC----eEEE
Confidence            344445678999999888754422 1   1222334445666666554200  0001112234778887664    4455


Q ss_pred             cccCCC-CCcceEEccCCCEEEEEEee-----CCceeEEEEECCCCcccceEECcCCCc-CceeeEEccCCCEEEEEEcc
Q 004971          506 LTTNGK-NNAFPSVSPDGKWIVFRSTR-----TGYKNLYIMDAEGGEGYGLHRLTEGPW-SDTMCNWSPDGEWIAFASDR  578 (721)
Q Consensus       506 l~~~~~-~~~~~~~SpDg~~l~~~s~~-----~g~~~l~~~d~~~g~~~~~~~l~~~~~-~~~~~~~SpDG~~l~~~~~~  578 (721)
                      +..... ...+.+..-+++.+++....     .....++++|+.+.+   -..+...+. ...+.+..-+++.++++...
T Consensus        82 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  158 (315)
T 4asc_A           82 MPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFK---WGESDPLPYVVYGHTVLSHMDLVYVIGGKG  158 (315)
T ss_dssp             CCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTE---EEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred             CCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCc---EeECCCCCCcccceeEEEECCEEEEEeCCC
Confidence            544331 12222233355544444322     123579999999876   334432211 11222333456544554431


Q ss_pred             CCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe
Q 004971          579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL  658 (721)
Q Consensus       579 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  658 (721)
                      . .......+++||+.+.+-+.+... ......+.+..-+++.+++.......            ....++++|+++.+.
T Consensus       159 ~-~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~------------~~~~~~~yd~~~~~W  224 (315)
T 4asc_A          159 S-DRKCLNKMCVYDPKKFEWKELAPM-QTARSLFGATVHDGRIIVAAGVTDTG------------LTSSAEVYSITDNKW  224 (315)
T ss_dssp             T-TSCBCCCEEEEETTTTEEEECCCC-SSCCBSCEEEEETTEEEEEEEECSSS------------EEEEEEEEETTTTEE
T ss_pred             C-CCcccceEEEEeCCCCeEEECCCC-CCchhceEEEEECCEEEEEeccCCCC------------ccceEEEEECCCCeE
Confidence            1 112235899999999877666543 22223333333466655655544321            123699999999988


Q ss_pred             EEecc
Q 004971          659 KRLTQ  663 (721)
Q Consensus       659 ~~lt~  663 (721)
                      +.+..
T Consensus       225 ~~~~~  229 (315)
T 4asc_A          225 APFEA  229 (315)
T ss_dssp             EEECC
T ss_pred             EECCC
Confidence            88864

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.29  E-value=0.47  Score=46.95  Aligned_cols=199  Identities=8%  Similarity=-0.053  Sum_probs=101.5

Q ss_pred             CcEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCC-CCc
Q 004971          439 PGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGK-NNA  514 (721)
Q Consensus       439 ~~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~-~~~  514 (721)
                      ..++++|+.+.+.+.+..   .........-+++.+++....    .......++.++....    ....+..... ...
T Consensus        77 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~----~~~~~~~~~~~d~~~~----~W~~~~~~p~~r~~  148 (302)
T 2xn4_A           77 RTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFD----GSTGLSSVEAYNIKSN----EWFHVAPMNTRRSS  148 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEC----SSCEEEEEEEEETTTT----EEEEECCCSSCCBS
T ss_pred             cceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCC----CCccCceEEEEeCCCC----eEeecCCCCCcccC
Confidence            468888988887766651   111112222255444444321    1222345777777654    4455544331 222


Q ss_pred             ceEEccCCCEEEEEEeeCC----ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEE
Q 004971          515 FPSVSPDGKWIVFRSTRTG----YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL  590 (721)
Q Consensus       515 ~~~~SpDg~~l~~~s~~~g----~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~  590 (721)
                      ..+..-+++.+++......    ...++++|+.+.+-..+..+......  ..+..-+++.++++.....  .....+++
T Consensus       149 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~--~~~~~~~~  224 (302)
T 2xn4_A          149 VGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSG--AGVGVLNNLLYAVGGHDGP--LVRKSVEV  224 (302)
T ss_dssp             CEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBS--CEEEEETTEEEEECCBSSS--SBCCCEEE
T ss_pred             ceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccccc--ccEEEECCEEEEECCCCCC--cccceEEE
Confidence            2333345654444433221    35799999998773223222222221  1222235655555443321  11357999


Q ss_pred             EecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEec
Q 004971          591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT  662 (721)
Q Consensus       591 ~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt  662 (721)
                      ||+.+++-..+.... ..........-+++.+++.......            ...++++||+++.+.+.+.
T Consensus       225 yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~i~v~GG~~~~~------------~~~~v~~yd~~~~~W~~~~  283 (302)
T 2xn4_A          225 YDPTTNAWRQVADMN-MCRRNAGVCAVNGLLYVVGGDDGSC------------NLASVEYYNPTTDKWTVVS  283 (302)
T ss_dssp             EETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCBCSSS------------BCCCEEEEETTTTEEEECS
T ss_pred             EeCCCCCEeeCCCCC-CccccCeEEEECCEEEEECCcCCCc------------ccccEEEEcCCCCeEEECC
Confidence            999998777765432 2222222333456555554433211            1246999999998888775

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.16  E-value=0.34  Score=48.14  Aligned_cols=201  Identities=7%  Similarity=-0.071  Sum_probs=99.1

Q ss_pred             CcEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCc
Q 004971          439 PGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNA  514 (721)
Q Consensus       439 ~~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~  514 (721)
                      ..++++|+.+.+...+..   .........-+++ |++......  .......++.++....    ....+.... ....
T Consensus        70 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~--~~~~~~~~~~~d~~~~----~W~~~~~~p~~r~~  142 (306)
T 3ii7_A           70 KRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGK-IYTSGGSEV--GNSALYLFECYDTRTE----SWHTKPSMLTQRCS  142 (306)
T ss_dssp             CEEEEEETTTTEEEEEECCSSCCBSCEEEEETTE-EEEECCBBT--TBSCCCCEEEEETTTT----EEEEECCCSSCCBS
T ss_pred             ceEEEEeCCCCeEEECCCCCccccceeEEEECCE-EEEECCCCC--CCcEeeeEEEEeCCCC----ceEeCCCCcCCcce
Confidence            468888888887666651   1111122222444 444321100  1112234666666553    444444333 2223


Q ss_pred             ceEEccCCCEEEEEEeeCC------ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeE
Q 004971          515 FPSVSPDGKWIVFRSTRTG------YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM  588 (721)
Q Consensus       515 ~~~~SpDg~~l~~~s~~~g------~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i  588 (721)
                      +.+..-+++.+++......      ...++++|+.+.+-..+..+......  ..+..-+++.++++.....  .....+
T Consensus       143 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~--~~~~~~  218 (306)
T 3ii7_A          143 HGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN--HGLVFVKDKIFAVGGQNGL--GGLDNV  218 (306)
T ss_dssp             CEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS--CEEEEETTEEEEECCEETT--EEBCCE
T ss_pred             eEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc--ceEEEECCEEEEEeCCCCC--CCCceE
Confidence            3334446655555433221      45799999998873222222222221  2222225655555443221  113479


Q ss_pred             EEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       589 ~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      ++||+.+.+-+.+.... .......+..-+++.+++...+...            ...++++||+++.+.+.+..
T Consensus       219 ~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~------------~~~~~~~yd~~~~~W~~~~~  280 (306)
T 3ii7_A          219 EYYDIKLNEWKMVSPMP-WKGVTVKCAAVGSIVYVLAGFQGVG------------RLGHILEYNTETDKWVANSK  280 (306)
T ss_dssp             EEEETTTTEEEECCCCS-CCBSCCEEEEETTEEEEEECBCSSS------------BCCEEEEEETTTTEEEEEEE
T ss_pred             EEeeCCCCcEEECCCCC-CCccceeEEEECCEEEEEeCcCCCe------------eeeeEEEEcCCCCeEEeCCC
Confidence            99999998777664332 2222222222355555554433211            12469999999988877753

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.13  E-value=0.043  Score=58.30  Aligned_cols=122  Identities=16%  Similarity=0.150  Sum_probs=69.1

Q ss_pred             EEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC------CCcCceeeEEccC---CCEEEE
Q 004971          504 RRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE------GPWSDTMCNWSPD---GEWIAF  574 (721)
Q Consensus       504 ~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~------~~~~~~~~~~SpD---G~~l~~  574 (721)
                      +.+...-.....++|.|||+.++. .. . ..+|++++..+++...+..+..      +......++|+||   +.+|++
T Consensus        20 ~~~a~~l~~P~~~a~~pdG~l~V~-e~-~-gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv   96 (454)
T 1cru_A           20 KVILSNLNKPHALLWGPDNQIWLT-ER-A-TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (454)
T ss_dssp             EEEECCCSSEEEEEECTTSCEEEE-ET-T-TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             EEEECCCCCceEEEEcCCCcEEEE-Ec-C-CCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEE
Confidence            334333345678999999985543 32 1 2469999876666433333332      2233457999997   778888


Q ss_pred             EEccCCC------CCCceeEEEEecCCC-----ceEEeee-cC--CCCCcCCeEECCCCCEEEEEEecC
Q 004971          575 ASDRDNP------GSGSFEMYLIHPNGT-----GLRKLIQ-SG--SAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       575 ~~~~~~~------~~~~~~i~~~d~~~~-----~~~~l~~-~~--~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      +......      ......|++++.+.+     ..+.+.. ..  .......++|.|||+ |+++..+.
T Consensus        97 ~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd~  164 (454)
T 1cru_A           97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQ  164 (454)
T ss_dssp             EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCT
T ss_pred             EEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECCC
Confidence            7753100      001357888887543     1222322 11  112346789999997 55554443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.92  E-value=0.55  Score=46.44  Aligned_cols=200  Identities=7%  Similarity=-0.082  Sum_probs=98.5

Q ss_pred             CcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccc---eEEcccCC-C
Q 004971          439 PGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA---VRRLTTNG-K  511 (721)
Q Consensus       439 ~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~l~~~~-~  511 (721)
                      ..++++|+.+.+...+.   ..........-+++.+++....    .......+|.++....    .   .+.+.... .
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~----~~~~~~~~~~~d~~~~----~~~~W~~~~~~p~~  102 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYD----GRSRLSSVECLDYTAD----EDGVWYSVAPMNVR  102 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC----SSCBCCCEEEEETTCC----TTCCCEEECCCSSC
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCC----CCccCceEEEEECCCC----CCCeeEECCCCCCC
Confidence            45778888777665554   1111122222344333333211    1112234666665543    3   44444333 2


Q ss_pred             CCcceEEccCCCEEEEEEeeCC--ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEE
Q 004971          512 NNAFPSVSPDGKWIVFRSTRTG--YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMY  589 (721)
Q Consensus       512 ~~~~~~~SpDg~~l~~~s~~~g--~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~  589 (721)
                      ...+.+..-+++.+++......  ...++++|+.+.+-..+..+......  ..+..-+++.++++.....  .....++
T Consensus       103 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~--~~~~~~~  178 (301)
T 2vpj_A          103 RGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG--AGLVVASGVIYCLGGYDGL--NILNSVE  178 (301)
T ss_dssp             CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS--CEEEEETTEEEEECCBCSS--CBCCCEE
T ss_pred             ccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc--ceEEEECCEEEEECCCCCC--cccceEE
Confidence            2223333345554444432211  34799999998874334434332222  2222336665444443221  1235799


Q ss_pred             EEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          590 LIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       590 ~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      +||+.+.+-..+... ......+....-+++.+++.......            ...+++++|+++.+.+.+..
T Consensus       179 ~~d~~~~~W~~~~~~-p~~r~~~~~~~~~~~i~v~GG~~~~~------------~~~~v~~yd~~~~~W~~~~~  239 (301)
T 2vpj_A          179 KYDPHTGHWTNVTPM-ATKRSGAGVALLNDHIYVVGGFDGTA------------HLSSVEAYNIRTDSWTTVTS  239 (301)
T ss_dssp             EEETTTTEEEEECCC-SSCCBSCEEEEETTEEEEECCBCSSS------------BCCCEEEEETTTTEEEEECC
T ss_pred             EEeCCCCcEEeCCCC-CcccccceEEEECCEEEEEeCCCCCc------------ccceEEEEeCCCCcEEECCC
Confidence            999999877766433 22222222333355544443332211            12469999999998888754

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.89  E-value=0.42  Score=47.98  Aligned_cols=177  Identities=14%  Similarity=0.052  Sum_probs=91.5

Q ss_pred             eEEEEeCCCcceEeecCC--CCCccccccCCCCCE--EEEEecCC--CCCCcccceeeeeEEEEEcCCCceeEEEec---
Q 004971          197 AVYSTELKTGLTRRLTPY--GVADFSPAVSPSGKY--TAVASYGN--KGWDGEVEMLSTDIYIFLTRDGTQRVKIVE---  267 (721)
Q Consensus       197 ~l~~v~~~~g~~~~lt~~--~~~~~~p~~SPDG~~--la~~~~~~--~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~---  267 (721)
                      .|+.+++++.....+...  .+....|.|.-.|+.  |++++++.  .        ..-.||.++.++++...+...   
T Consensus        51 gL~Vydl~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~--------n~l~vf~iDp~~~~l~~i~~~~~p  122 (355)
T 3amr_A           51 GLVVYSLDGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGK--------NTIEIYAIDGKNGTLQSMTDPDHP  122 (355)
T ss_dssp             EEEEEETTSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTC--------CEEEEEEECTTTCCEEECSCTTSC
T ss_pred             CEEEEcCCCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCC--------CeEEEEEECCCCCceeeccccccC
Confidence            799999988777777432  123345555445666  67777765  4        234455556667665444210   


Q ss_pred             --cC-C---ccee--ccC-CeE-EEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEE
Q 004971          268 --NG-G---WPCW--VDE-STL-FFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAV  337 (721)
Q Consensus       268 --~~-~---~~~w--s~d-g~l-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~  337 (721)
                        .. .   ..+.  +++ +++ +|  ...+++.+..|++.....+...   .+..+....+.....+.+.+ ...+|++
T Consensus       123 v~t~~~~pyGlcly~~~~~g~~yaf--V~~k~G~~~q~~l~~~~~g~~~---~~lVR~f~lgsq~EgcvvDd-~~g~Lyv  196 (355)
T 3amr_A          123 IATAINEVYGFTLYHSQKTGKYYAM--VTGKEGEFEQYELKADKNGYIS---GKKVRAFKMNSQTEGMAADD-EYGRLYI  196 (355)
T ss_dssp             EECCCSSCCCEEEEECTTTCCEEEE--EECSSSEEEEEEEEECTTSCEE---EEEEEEEECSSCEEEEEEET-TTTEEEE
T ss_pred             cCCCCCCeeEEEEEecCCCCcEEEE--EECCCCeEEEEEEEeCCCCccc---ceEEEEecCCCCcceEEEcC-CCCeEEE
Confidence              11 1   2234  453 553 33  3444688888877553222100   12222222333566778887 7778887


Q ss_pred             EEecCCCCeeeEEEEECC--CCc-eEEeecc--cCCCCcccCcEE--cCCCCEEEEEEeeCC
Q 004971          338 ATRRPTSSYRHIELFDLV--KNK-FIELTRF--VSPKTHHLNPFI--SPDSSRVGYHKCRGG  392 (721)
Q Consensus       338 ~~~~~g~~~~~l~l~dl~--tg~-~~~l~~~--~~~~~~~~~~~~--Spdg~~l~~~~~~~~  392 (721)
                      ...     +..||.++.+  ++. .+.+...  ......+.++++  .++|+..++++..+.
T Consensus       197 ~eE-----d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~  253 (355)
T 3amr_A          197 AEE-----DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN  253 (355)
T ss_dssp             EET-----TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             ecc-----cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence            542     2349999955  211 1222221  111223455556  567773334444444

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.83  E-value=0.86  Score=45.40  Aligned_cols=209  Identities=8%  Similarity=-0.051  Sum_probs=101.3

Q ss_pred             cEEEEECCCCceEEEeec--Cc-eeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcc
Q 004971          440 GVYVVNSDGSNRRQVYFK--NA-FSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAF  515 (721)
Q Consensus       440 ~l~v~d~~~g~~~~l~~~--~~-~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~  515 (721)
                      .++++|+.+++.+.+..-  .. ......-++ .|++...............++.++....    ..+.+.... ....+
T Consensus        68 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~----~W~~~~~~p~~r~~~  142 (315)
T 4asc_A           68 YFLQFDHLDSEWLGMPPLPSPRCLFGLGEALN-SIYVVGGREIKDGERCLDSVMCYDRLSF----KWGESDPLPYVVYGH  142 (315)
T ss_dssp             EEEEEETTTTEEEECCCBSSCEESCEEEEETT-EEEEECCEESSTTCCBCCCEEEEETTTT----EEEECCCCSSCCBSC
T ss_pred             ceEEecCCCCeEEECCCCCcchhceeEEEECC-EEEEEeCCcCCCCCcccceEEEECCCCC----cEeECCCCCCcccce
Confidence            378888888776665411  11 111111133 4544432100011222345666666553    445554433 22233


Q ss_pred             eEEccCCCEEEEEEeeCC---ceeEEEEECCCCcccceEECcCCCc-CceeeEEccCCCEEEEEEccCCCCCCceeEEEE
Q 004971          516 PSVSPDGKWIVFRSTRTG---YKNLYIMDAEGGEGYGLHRLTEGPW-SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLI  591 (721)
Q Consensus       516 ~~~SpDg~~l~~~s~~~g---~~~l~~~d~~~g~~~~~~~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~  591 (721)
                      .+..-+++.+++.....+   ...++++|+.+.+   -..+...+. .....+..-+++.++++.....  .....+++|
T Consensus       143 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~y  217 (315)
T 4asc_A          143 TVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE---WKELAPMQTARSLFGATVHDGRIIVAAGVTDT--GLTSSAEVY  217 (315)
T ss_dssp             EEEEETTEEEEECCBCTTSCBCCCEEEEETTTTE---EEECCCCSSCCBSCEEEEETTEEEEEEEECSS--SEEEEEEEE
T ss_pred             eEEEECCEEEEEeCCCCCCcccceEEEEeCCCCe---EEECCCCCCchhceEEEEECCEEEEEeccCCC--CccceEEEE
Confidence            344456654444433121   3489999999876   333332211 1112222336665555554321  123579999


Q ss_pred             ecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEec
Q 004971          592 HPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT  662 (721)
Q Consensus       592 d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt  662 (721)
                      |+.+.+-..+... ...........-+++.+++..........   .........+++++|+++.+.+++.
T Consensus       218 d~~~~~W~~~~~~-p~~r~~~~~~~~~~~l~v~GG~~~~~~~~---~~~~~~~~~~v~~yd~~~~~W~~~~  284 (315)
T 4asc_A          218 SITDNKWAPFEAF-PQERSSLSLVSLVGTLYAIGGFATLETES---GELVPTELNDIWRYNEEEKKWEGVL  284 (315)
T ss_dssp             ETTTTEEEEECCC-SSCCBSCEEEEETTEEEEEEEEEEEECTT---SCEEEEEEEEEEEEETTTTEEEEEE
T ss_pred             ECCCCeEEECCCC-CCcccceeEEEECCEEEEECCccccCcCC---ccccccccCcEEEecCCCChhhhhc
Confidence            9999877776543 22223333333466655555442200000   0000011246999999999888884

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.75  E-value=0.27  Score=49.03  Aligned_cols=200  Identities=6%  Similarity=-0.134  Sum_probs=96.6

Q ss_pred             CcEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCc
Q 004971          439 PGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNA  514 (721)
Q Consensus       439 ~~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~  514 (721)
                      ..++++|+.+.+.+.+..   .........-+++ |++.....   .......++.++....    ....+.... ....
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~---~~~~~~~~~~yd~~~~----~W~~~~~~p~~r~~  161 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGH-IYAVGGSH---GCIHHNSVERYEPERD----EWHLVAPMLTRRIG  161 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEEETTE-EEEECCEE---TTEECCCEEEEETTTT----EEEECCCCSSCCBS
T ss_pred             ceEEEECCCCCeEeECCCCCcCccccEEEEECCE-EEEEcCCC---CCcccccEEEECCCCC----eEeECCCCCccccc
Confidence            568889988887666651   1111111122444 44432100   1111234566666553    445554333 1222


Q ss_pred             ceEEccCCCEEEEEEeeCC--ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEe
Q 004971          515 FPSVSPDGKWIVFRSTRTG--YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH  592 (721)
Q Consensus       515 ~~~~SpDg~~l~~~s~~~g--~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d  592 (721)
                      ..+..-+++.+++......  ...++++|+.+.+-..+..+...... ...+ .-+++.++++.....  .....+++||
T Consensus       162 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~--~~~~~v~~yd  237 (308)
T 1zgk_A          162 VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSG-AGVC-VLHNCIYAAGGYDGQ--DQLNSVERYD  237 (308)
T ss_dssp             CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCSS--SBCCCEEEEE
T ss_pred             eEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcccc-ceEE-EECCEEEEEeCCCCC--CccceEEEEe
Confidence            2233335554444332211  35799999988773222222222121 1222 225554444433211  1235799999


Q ss_pred             cCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          593 PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       593 ~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      +.+.+-..+... .......-...-+++.+++...+...            ...+++++|+++.+.+.+..
T Consensus       238 ~~~~~W~~~~~~-p~~r~~~~~~~~~~~i~v~GG~~~~~------------~~~~v~~yd~~~~~W~~~~~  295 (308)
T 1zgk_A          238 VETETWTFVAPM-KHRRSALGITVHQGRIYVLGGYDGHT------------FLDSVECYDPDTDTWSEVTR  295 (308)
T ss_dssp             TTTTEEEECCCC-SSCCBSCEEEEETTEEEEECCBCSSC------------BCCEEEEEETTTTEEEEEEE
T ss_pred             CCCCcEEECCCC-CCCccceEEEEECCEEEEEcCcCCCc------------ccceEEEEcCCCCEEeecCC
Confidence            999877766533 12222222223355555554333211            12479999999988887754

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.65  E-value=2  Score=42.76  Aligned_cols=212  Identities=10%  Similarity=0.027  Sum_probs=107.2

Q ss_pred             EEEEEeCCcEEEEECCCCceEEEe-e---cCceeeEEcCCCCeEEEEecCCCCCC--CCCcEEEEEEEccCCCCccceEE
Q 004971          432 RIAFVEFPGVYVVNSDGSNRRQVY-F---KNAFSTVWDPVREAVVYTSGGPEFAS--ESSEVDIISINVDDVDGVSAVRR  505 (721)
Q Consensus       432 ~la~~~~~~l~v~d~~~g~~~~l~-~---~~~~~~~~spdg~~la~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~  505 (721)
                      .|++.+...++.+|..+++..... .   ..........+++.+++.........  ..-...++.++....    ....
T Consensus        17 ~i~~~GG~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~----~W~~   92 (318)
T 2woz_A           17 LILLVNDTAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS----EWVG   92 (318)
T ss_dssp             EEEEECSSEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTT----EEEE
T ss_pred             hhhhccccceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCC----cEEE
Confidence            344445556899999888755533 1   12223334455655555431100000  011224777777654    5555


Q ss_pred             cccCCC-CCcceEEccCCCEEEEEEeeC----CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCC
Q 004971          506 LTTNGK-NNAFPSVSPDGKWIVFRSTRT----GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN  580 (721)
Q Consensus       506 l~~~~~-~~~~~~~SpDg~~l~~~s~~~----g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~  580 (721)
                      +..... ...+.+..-+++.+++.....    ....++++|+.+.+-..+..+.....  .+.+..-+++.++++.....
T Consensus        93 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~~~~~~~~~iyv~GG~~~~  170 (318)
T 2woz_A           93 LPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVY--GHNVISHNGMIYCLGGKTDD  170 (318)
T ss_dssp             CSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEE--SCEEEEETTEEEEECCEESS
T ss_pred             CCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccc--ccEEEEECCEEEEEcCCCCC
Confidence            544332 222233334565555554321    12479999999877322222222111  12223346665555443210


Q ss_pred             CCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEE
Q 004971          581 PGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR  660 (721)
Q Consensus       581 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  660 (721)
                       ......+++||+.+.+-..+... ......+.+..-+++.+++........            ..+++++|+++.+.+.
T Consensus       171 -~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~------------~~~~~~yd~~~~~W~~  236 (318)
T 2woz_A          171 -KKCTNRVFIYNPKKGDWKDLAPM-KTPRSMFGVAIHKGKIVIAGGVTEDGL------------SASVEAFDLKTNKWEV  236 (318)
T ss_dssp             -SCBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEEETTEEEEEEEEETTEE------------EEEEEEEETTTCCEEE
T ss_pred             -CCccceEEEEcCCCCEEEECCCC-CCCcccceEEEECCEEEEEcCcCCCCc------------cceEEEEECCCCeEEE
Confidence             01235799999999877766533 222222223334666556655433211            2369999999998888


Q ss_pred             ecc
Q 004971          661 LTQ  663 (721)
Q Consensus       661 lt~  663 (721)
                      +..
T Consensus       237 ~~~  239 (318)
T 2woz_A          237 MTE  239 (318)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.63  E-value=0.88  Score=44.92  Aligned_cols=202  Identities=7%  Similarity=-0.056  Sum_probs=97.8

Q ss_pred             CcEEEEECCCCceEEEe--e-cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCc
Q 004971          439 PGVYVVNSDGSNRRQVY--F-KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNA  514 (721)
Q Consensus       439 ~~l~v~d~~~g~~~~l~--~-~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~  514 (721)
                      ..++.+|+.+.+...+.  + .........-++ .|++.....   .......++.++....    ....+.... ....
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~---~~~~~~~~~~~d~~~~----~W~~~~~~p~~r~~  101 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAG-LVFAVGGFN---GSLRVRTVDSYDPVKD----QWTSVANMRDRRST  101 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEETT-EEEEESCBC---SSSBCCCEEEEETTTT----EEEEECCCSSCCBS
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEECC-EEEEEeCcC---CCccccceEEECCCCC----ceeeCCCCCccccc
Confidence            35777787777655554  1 111111112233 444432110   1112234666666553    445554433 2222


Q ss_pred             ceEEccCCCEEEEEEeeCC--ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEe
Q 004971          515 FPSVSPDGKWIVFRSTRTG--YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIH  592 (721)
Q Consensus       515 ~~~~SpDg~~l~~~s~~~g--~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d  592 (721)
                      +.+..-+++.+++......  ...++++|+.+.+-..+..+......  ..+..-+++.++++............+++||
T Consensus       102 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd  179 (302)
T 2xn4_A          102 LGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS--VGVGVVGGLLYAVGGYDVASRQCLSTVECYN  179 (302)
T ss_dssp             CEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS--CEEEEETTEEEEECCEETTTTEECCCEEEEE
T ss_pred             eEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC--ceEEEECCEEEEEeCCCCCCCccccEEEEEe
Confidence            3333446665555543221  24799999998773222222222111  1222235655555443321000134799999


Q ss_pred             cCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          593 PNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       593 ~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      +.+.+-..+... ...........-+++.+++.......            ...+++++|+++.+.+.+..
T Consensus       180 ~~~~~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~------------~~~~~~~yd~~~~~W~~~~~  237 (302)
T 2xn4_A          180 ATTNEWTYIAEM-STRRSGAGVGVLNNLLYAVGGHDGPL------------VRKSVEVYDPTTNAWRQVAD  237 (302)
T ss_dssp             TTTTEEEEECCC-SSCCBSCEEEEETTEEEEECCBSSSS------------BCCCEEEEETTTTEEEEECC
T ss_pred             CCCCcEEECCCC-ccccccccEEEECCEEEEECCCCCCc------------ccceEEEEeCCCCCEeeCCC
Confidence            999877766433 22222222333355555554333211            12469999999998888864

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.55  E-value=0.52  Score=46.78  Aligned_cols=200  Identities=10%  Similarity=-0.037  Sum_probs=101.0

Q ss_pred             CCcEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCC
Q 004971          438 FPGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNN  513 (721)
Q Consensus       438 ~~~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~  513 (721)
                      ...++++|+.+++...+..   .........-+++ |++... ..   ......++.++....    ....+.... ...
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-lyv~GG-~~---~~~~~~~~~~d~~~~----~W~~~~~~p~~r~   93 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNV-VYILGG-SQ---LFPIKRMDCYNVVKD----SWYSKLGPPTPRD   93 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTE-EEEECC-BS---SSBCCEEEEEETTTT----EEEEEECCSSCCB
T ss_pred             CceEEEecCCCCCEecCCCCCcccceeEEEEECCE-EEEEeC-CC---CCCcceEEEEeCCCC----eEEECCCCCcccc
Confidence            3568888888877666651   1111222222444 443321 11   223345666666553    444444433 222


Q ss_pred             cceEEccCCCEEEEEEee-C--CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCC----ce
Q 004971          514 AFPSVSPDGKWIVFRSTR-T--GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG----SF  586 (721)
Q Consensus       514 ~~~~~SpDg~~l~~~s~~-~--g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~----~~  586 (721)
                      .+.+..-+++.+++.... .  ....++++|+.+.+-..+..+.....  ...+..-+++.++++.....  ..    ..
T Consensus        94 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~--~~~~~~~~~~iyv~GG~~~~--~~~~~~~~  169 (306)
T 3ii7_A           94 SLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRC--SHGMVEANGLIYVCGGSLGN--NVSGRVLN  169 (306)
T ss_dssp             SCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCB--SCEEEEETTEEEEECCEESC--TTTCEECC
T ss_pred             ceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcc--eeEEEEECCEEEEECCCCCC--CCcccccc
Confidence            333334466555554432 1  23579999999877322222222222  12222336655555443321  11    45


Q ss_pred             eEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       587 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      .+++||+.+.+-..+... ......+....-+++.+++.......            ...+++++|+.+.+.+.+..
T Consensus       170 ~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~~i~v~GG~~~~~------------~~~~~~~yd~~~~~W~~~~~  233 (306)
T 3ii7_A          170 SCEVYDPATETWTELCPM-IEARKNHGLVFVKDKIFAVGGQNGLG------------GLDNVEYYDIKLNEWKMVSP  233 (306)
T ss_dssp             CEEEEETTTTEEEEECCC-SSCCBSCEEEEETTEEEEECCEETTE------------EBCCEEEEETTTTEEEECCC
T ss_pred             eEEEeCCCCCeEEECCCc-cchhhcceEEEECCEEEEEeCCCCCC------------CCceEEEeeCCCCcEEECCC
Confidence            799999999877766543 22222333333356655554333221            12369999999988888754

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.22  E-value=0.39  Score=50.81  Aligned_cols=154  Identities=11%  Similarity=0.137  Sum_probs=82.8

Q ss_pred             CCceeCcCCCEEEEEeCC-cEEEEECCCCceEEEe--e---------cCceeeEEcCC---CCeEEEEecCCCC-CCC--
Q 004971          422 SFPSFSPKGDRIAFVEFP-GVYVVNSDGSNRRQVY--F---------KNAFSTVWDPV---REAVVYTSGGPEF-ASE--  483 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~~~-~l~v~d~~~g~~~~l~--~---------~~~~~~~~spd---g~~la~~~~~~~~-~~~--  483 (721)
                      ..++|.|||+.++....+ .|++++..++....+.  .         +....++|+||   +.+|++....... ...  
T Consensus        30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~  109 (454)
T 1cru_A           30 HALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKE  109 (454)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CC
T ss_pred             eEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccc
Confidence            347899999744444343 6999987666654443  1         12347999997   7788776521000 000  


Q ss_pred             -CCcEEEEEEEccCCC-CccceEEc----ccCC-CCCcceEEccCCCEEEEEEeeC------------------------
Q 004971          484 -SSEVDIISINVDDVD-GVSAVRRL----TTNG-KNNAFPSVSPDGKWIVFRSTRT------------------------  532 (721)
Q Consensus       484 -~~~~~i~~~~~~~~~-~~~~~~~l----~~~~-~~~~~~~~SpDg~~l~~~s~~~------------------------  532 (721)
                       .....|++++.+... .....+.+    .... .....++|.|||+ |+++....                        
T Consensus       110 ~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~  188 (454)
T 1cru_A          110 LPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLAYLFLPNQAQHTPTQQELN  188 (454)
T ss_dssp             SCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGGGTTSCCCTTCCCCHHHHH
T ss_pred             cccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECCCCCCCcccccccccccccccccccc
Confidence             114567777654321 00111222    1111 2345689999997 55543221                        


Q ss_pred             ------CceeEEEEECCCCccc--------ceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971          533 ------GYKNLYIMDAEGGEGY--------GLHRLTEGPWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       533 ------g~~~l~~~d~~~g~~~--------~~~~l~~~~~~~~~~~~SpDG~~l~~~~~  577 (721)
                            ....|++++.++.-+.        ..+.+..+......++|.|+|+ |+++..
T Consensus       189 aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~-L~~~d~  246 (454)
T 1cru_A          189 GKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQ  246 (454)
T ss_dssp             TTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEE
T ss_pred             ccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCC-EEEEec
Confidence                  1357999998754100        0122333334457799999887 444443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.79  E-value=0.57  Score=46.59  Aligned_cols=155  Identities=7%  Similarity=-0.092  Sum_probs=77.7

Q ss_pred             EEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCC--ceeEEEEECCCCcccceEECcCCCcCceeeE
Q 004971          488 DIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTG--YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN  564 (721)
Q Consensus       488 ~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g--~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~  564 (721)
                      .+|.++....    ....+.... ......+..-+++.+++......  ...++++|+.+.+-..+..+......  ..+
T Consensus        91 ~~~~~d~~~~----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~  164 (308)
T 1zgk_A           91 ALDCYNPMTN----QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG--VGV  164 (308)
T ss_dssp             CEEEEETTTT----EEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS--CEE
T ss_pred             eEEEECCCCC----eEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc--eEE
Confidence            4566666553    445554433 12222333346655555432221  34799999998773222222222221  112


Q ss_pred             EccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCC
Q 004971          565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQP  644 (721)
Q Consensus       565 ~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~  644 (721)
                      ..-+++.++++.....  .....+++||+.+.+-..+.... ..........-+++.+++.......            .
T Consensus       165 ~~~~~~iyv~GG~~~~--~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~------------~  229 (308)
T 1zgk_A          165 AVLNRLLYAVGGFDGT--NRLNSAECYYPERNEWRMITAMN-TIRSGAGVCVLHNCIYAAGGYDGQD------------Q  229 (308)
T ss_dssp             EEETTEEEEECCBCSS--CBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTEEEEECCBCSSS------------B
T ss_pred             EEECCEEEEEeCCCCC--CcCceEEEEeCCCCeEeeCCCCC-CccccceEEEECCEEEEEeCCCCCC------------c
Confidence            2225554444443321  11357999999988776664321 2222222222355544443333211            1


Q ss_pred             CccEEEEEcCCCCeEEecc
Q 004971          645 YGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       645 ~~~l~~~d~~~~~~~~lt~  663 (721)
                      ..+++++|+++.+.+.+..
T Consensus       230 ~~~v~~yd~~~~~W~~~~~  248 (308)
T 1zgk_A          230 LNSVERYDVETETWTFVAP  248 (308)
T ss_dssp             CCCEEEEETTTTEEEECCC
T ss_pred             cceEEEEeCCCCcEEECCC
Confidence            2469999999988888764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.56  E-value=2.3  Score=42.32  Aligned_cols=164  Identities=10%  Similarity=0.032  Sum_probs=82.0

Q ss_pred             cEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCC---ceeEEEEECCCCcccceEECcCCCcCce
Q 004971          486 EVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTG---YKNLYIMDAEGGEGYGLHRLTEGPWSDT  561 (721)
Q Consensus       486 ~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g---~~~l~~~d~~~g~~~~~~~l~~~~~~~~  561 (721)
                      ...++.++....    ....+.... ....+.+..-+++.+++.....+   ...++++|+.+.+-..+..+......  
T Consensus       126 ~~~~~~yd~~~~----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--  199 (318)
T 2woz_A          126 LDSVLCYDPVAA----KWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM--  199 (318)
T ss_dssp             EEEEEEEETTTT----EEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS--
T ss_pred             cceEEEEeCCCC----CEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc--
Confidence            345777777654    445544333 12223334456665555443221   34799999998773222222222221  


Q ss_pred             eeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCC
Q 004971          562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQ  641 (721)
Q Consensus       562 ~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~  641 (721)
                      ..+..-+++.++++.....  .....+++||+.+.+-..+... ......+....-+++.+++....... .+  .....
T Consensus       200 ~~~~~~~~~iyv~GG~~~~--~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~~i~v~GG~~~~~-~~--~~~~~  273 (318)
T 2woz_A          200 FGVAIHKGKIVIAGGVTED--GLSASVEAFDLKTNKWEVMTEF-PQERSSISLVSLAGSLYAIGGFAMIQ-LE--SKEFA  273 (318)
T ss_dssp             CEEEEETTEEEEEEEEETT--EEEEEEEEEETTTCCEEECCCC-SSCCBSCEEEEETTEEEEECCBCCBC-------CCB
T ss_pred             ceEEEECCEEEEEcCcCCC--CccceEEEEECCCCeEEECCCC-CCcccceEEEEECCEEEEECCeeccC-CC--Cceec
Confidence            1222236665566554321  1235799999999887776543 22222333333455544443322210 00  00000


Q ss_pred             CCCCccEEEEEcCCCCeEEe
Q 004971          642 YQPYGEIFKIKLDGSDLKRL  661 (721)
Q Consensus       642 ~~~~~~l~~~d~~~~~~~~l  661 (721)
                      .....++|++|+++.+.+++
T Consensus       274 ~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          274 PTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             CCBCCCEEEEETTTTEEEEE
T ss_pred             cceeeeEEEEeCCCCEehhh
Confidence            11235799999999988887

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.45  E-value=3.6  Score=41.52  Aligned_cols=158  Identities=10%  Similarity=-0.005  Sum_probs=75.7

Q ss_pred             EEEEEEEccCCCCccceEEcccCCC-CCc-ceEEccCCCEEEEEEeeC-C--ceeEEEEEC--CCCcccceEECcCC---
Q 004971          487 VDIISINVDDVDGVSAVRRLTTNGK-NNA-FPSVSPDGKWIVFRSTRT-G--YKNLYIMDA--EGGEGYGLHRLTEG---  556 (721)
Q Consensus       487 ~~i~~~~~~~~~~~~~~~~l~~~~~-~~~-~~~~SpDg~~l~~~s~~~-g--~~~l~~~d~--~~g~~~~~~~l~~~---  556 (721)
                      ..++.++....    ....+..... ... ..+..-+++.+++..... +  ...++++|+  .+.+   -..+...   
T Consensus       168 ~~v~~yd~~~~----~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~---W~~~~~~~~~  240 (357)
T 2uvk_A          168 KFLLSFDPSTQ----QWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLK---WNKLAPVSSP  240 (357)
T ss_dssp             CEEEEEETTTT----EEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CE---EEECCCSSTT
T ss_pred             ccEEEEeCCCC----cEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCc---EEecCCCCCC
Confidence            35667776553    4444443321 122 233334555444433211 1  346888887  5554   3333221   


Q ss_pred             CcCceeeEEccCCCEEEEEEccCC---------------CCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCE
Q 004971          557 PWSDTMCNWSPDGEWIAFASDRDN---------------PGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS  621 (721)
Q Consensus       557 ~~~~~~~~~SpDG~~l~~~~~~~~---------------~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~  621 (721)
                      .......+..-+++.++++.....               .......+++||+.+.+-+++... ......+.+..-+++.
T Consensus       241 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~~i  319 (357)
T 2uvk_A          241 DGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL-SQGRAYGVSLPWNNSL  319 (357)
T ss_dssp             TCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC-SSCCBSSEEEEETTEE
T ss_pred             cccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC-CCCcccceeEEeCCEE
Confidence            111122234446665555443210               001124789999998877766543 2233334445567777


Q ss_pred             EEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          622 IVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       622 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      +++...+....           ...+++++++++++...+..
T Consensus       320 ~v~GG~~~~~~-----------~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          320 LIIGGETAGGK-----------AVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             EEEEEECGGGC-----------EEEEEEEEEC-CCSCEEEC-
T ss_pred             EEEeeeCCCCC-----------EeeeEEEEEEcCcEeEeeec
Confidence            77766543211           02469999999998776643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.97  E-value=4  Score=48.68  Aligned_cols=225  Identities=11%  Similarity=0.082  Sum_probs=122.0

Q ss_pred             CCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC--CCcceecccCC
Q 004971          344 SSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP--LPDISLFRFDG  421 (721)
Q Consensus       344 ~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~  421 (721)
                      ++..++.+.|+..+..  +.+.   .....+....|..+.|+.- .  +       ..+.+.++...  .+..+ ....+
T Consensus        45 ~~~~~vvIidl~~~~~--~~rr---pi~AdsAIMnP~~~iiALr-a--g-------~~lQiFnl~~k~klks~~-~~e~V  108 (1630)
T 1xi4_A           45 GEQAQVVIIDMNDPSN--PIRR---PISADSAIMNPASKVIALK-A--G-------KTLQIFNIEMKSKMKAHT-MTDDV  108 (1630)
T ss_pred             CCCceEEEEECCCCCC--cccc---cccchhhccCCCcceEEEe-c--C-------CeEEEeehHHhhhhcccc-cCCCc
Confidence            3455899999998763  2211   1222234556667766653 2  2       23555555433  22222 12233


Q ss_pred             CCceeCcCCCEEEEEeCCcEEEEECCCC-ceEEEe-------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEE
Q 004971          422 SFPSFSPKGDRIAFVEFPGVYVVNSDGS-NRRQVY-------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISIN  493 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~~~~l~v~d~~~g-~~~~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~  493 (721)
                      .+-.|-. .+.|+.++...||.|++.+. .++.++       ...+..+.-++|.+|++.+.-...-..-.|...+|.++
T Consensus       109 vfWkWis-~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e  187 (1630)
T 1xi4_A          109 TFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD  187 (1630)
T ss_pred             eEEEecC-CCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc
Confidence            4445643 34789999999999999753 233333       34567888999999999876422212235778888877


Q ss_pred             ccCCCCccceEEcccCCCCCc---ceEEccCCCEEEEEEeeCCceeEEEEECCCC---cc---cceEECcCCC----cCc
Q 004971          494 VDDVDGVSAVRRLTTNGKNNA---FPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG---EG---YGLHRLTEGP----WSD  560 (721)
Q Consensus       494 ~~~~~~~~~~~~l~~~~~~~~---~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g---~~---~~~~~l~~~~----~~~  560 (721)
                      ..-      .+.+..+...-.   .....+..+.++|+........|.++++...   ..   +....+...+    ...
T Consensus       188 r~~------sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfp  261 (1630)
T 1xi4_A          188 RKV------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP  261 (1630)
T ss_pred             ccc------chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcc
Confidence            542      233333331111   1112233445555554333468999988542   11   1111222111    112


Q ss_pred             eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCce
Q 004971          561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGL  598 (721)
Q Consensus       561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~  598 (721)
                      ..+..|+.-..|+.....+       .|++||+.++..
T Consensus       262 v~~~vs~k~g~iy~itk~G-------~~~~~d~~t~~~  292 (1630)
T 1xi4_A          262 VAMQISEKHDVVFLITKYG-------YIHLYDLETGTC  292 (1630)
T ss_pred             eEEEeccccCEEEEEecCc-------eEEEEecccchh
Confidence            3445676655555555443       799999998853

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=93.85  E-value=6.9  Score=40.35  Aligned_cols=220  Identities=10%  Similarity=0.116  Sum_probs=123.2

Q ss_pred             ceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEE-Ee-ecCceeeEEcCCCCeEEEEecC
Q 004971          400 NQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQ-VY-FKNAFSTVWDPVREAVVYTSGG  477 (721)
Q Consensus       400 ~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~-l~-~~~~~~~~~spdg~~la~~~~~  477 (721)
                      ..+.+.|+..+... +..+......-.+|..+.||.-....|.++|+++..... .. ...+..=.|- +.+.|++++  
T Consensus        48 ~~vvIiDl~~~~~~-~rrpi~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e~VvfWkWi-s~~~l~lVT--  123 (494)
T 1bpo_A           48 AQVVIIDMNDPSNP-IRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI-SLNTVALVT--  123 (494)
T ss_dssp             CEEEEEETTSTTSC-EEEECCCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEEE-ETTEEEEEC--
T ss_pred             CeEEEEECCCCCcc-eecccccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCCCceEEEec-CCCeEEEEc--
Confidence            56788888765432 333444556677898888888788899999999876432 22 3444444454 334677665  


Q ss_pred             CCCCCCCCcEEEEEEEccCCCCccceEEcccCC----CCCcceEEccCCCEEEEEEee--CC--ceeEEEEECCCCcccc
Q 004971          478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNG----KNNAFPSVSPDGKWIVFRSTR--TG--YKNLYIMDAEGGEGYG  549 (721)
Q Consensus       478 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~SpDg~~l~~~s~~--~g--~~~l~~~d~~~g~~~~  549 (721)
                            +..+.-|.+..+..    ..+.+..+.    ..+.....++|.+|++...-.  ++  .+.+.+|..+.+.   
T Consensus       124 ------~taVyHWsi~~~s~----P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~---  190 (494)
T 1bpo_A          124 ------DNAVYHWSMEGESQ----PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---  190 (494)
T ss_dssp             ------SSEEEEEESSSSCC----CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC---
T ss_pred             ------CCeeEEecccCCCC----chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc---
Confidence                  34555555543331    333333332    334456789999999977542  21  2456677776543   


Q ss_pred             eEECcCCCcCceeeEEccCC-----CEEEEEEccCCCCCCceeEEEEecCCC---------ceEEeeecC--CCCCcCCe
Q 004971          550 LHRLTEGPWSDTMCNWSPDG-----EWIAFASDRDNPGSGSFEMYLIHPNGT---------GLRKLIQSG--SAGRANHP  613 (721)
Q Consensus       550 ~~~l~~~~~~~~~~~~SpDG-----~~l~~~~~~~~~~~~~~~i~~~d~~~~---------~~~~l~~~~--~~~~~~~~  613 (721)
                      -..+..+..  ....+-.+|     +.++|+....    ....|.++++...         +...+....  .......+
T Consensus       191 sQ~ieGhaa--~F~~~~~~g~~~~~~lf~fa~r~~----~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvam  264 (494)
T 1bpo_A          191 SQPIEGHAA--SFAQFKMEGNAEESTLFCFAVRGQ----AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM  264 (494)
T ss_dssp             EEEECCSEE--EEEEEECTTCSSEEEEEEEEECST----TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEE
T ss_pred             cchheeeee--eeEEEecCCCCCCceEEEEEEecC----CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEE
Confidence            233333322  223343333     2455555442    3358999998543         111121111  11122345


Q ss_pred             EECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971          614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK  659 (721)
Q Consensus       614 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  659 (721)
                      ..|+.-..|+..+..+                 -|++||+.++...
T Consensus       265 qvs~kygviyviTK~G-----------------~i~lyDleTgt~i  293 (494)
T 1bpo_A          265 QISEKHDVVFLITKYG-----------------YIHLYDLETGTCI  293 (494)
T ss_dssp             EEETTTTEEEEEETTS-----------------EEEEEETTTCCEE
T ss_pred             EecccCCEEEEEecCc-----------------eEEEEecccceee
Confidence            5676666565555433                 4999999998754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.09  E-value=0.88  Score=48.13  Aligned_cols=142  Identities=12%  Similarity=0.135  Sum_probs=73.6

Q ss_pred             CCCcceEEccCCC-EEEEEEeeCCceeEEEEECCCCc-ccceEECc----CC-----CcCceeeEEccC---CCEEEEEE
Q 004971          511 KNNAFPSVSPDGK-WIVFRSTRTGYKNLYIMDAEGGE-GYGLHRLT----EG-----PWSDTMCNWSPD---GEWIAFAS  576 (721)
Q Consensus       511 ~~~~~~~~SpDg~-~l~~~s~~~g~~~l~~~d~~~g~-~~~~~~l~----~~-----~~~~~~~~~SpD---G~~l~~~~  576 (721)
                      .....++|.|||+ +|+++..   ...|++++.++.. ...+..+.    .+     ......++|+||   ..+|++..
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er---~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y   90 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEK---EGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY   90 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEET---TTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeC---CceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence            3567789999996 5555543   4579999765432 11123332    11     233456899997   44566554


Q ss_pred             ccCCC------CCCceeEEEEecCCC--------ceEEeeec---CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCC-
Q 004971          577 DRDNP------GSGSFEMYLIHPNGT--------GLRKLIQS---GSAGRANHPYFSPDGKSIVFTSDYGGISAEPIST-  638 (721)
Q Consensus       577 ~~~~~------~~~~~~i~~~d~~~~--------~~~~l~~~---~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~-  638 (721)
                      .....      ......|.++.+..+        +.+.+...   ........+.|.|||+ ||++..+.+...++... 
T Consensus        91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd~~~~~~~~~~~  169 (463)
T 2wg3_C           91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGDGMITLDDMEEM  169 (463)
T ss_dssp             EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECCTTCCHHHHHHC
T ss_pred             eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCCCCCCCCccccc
Confidence            32100      001247777777532        22333321   1122335689999996 55555544321000000 


Q ss_pred             CCCCCCCccEEEEEcCCC
Q 004971          639 PHQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       639 ~~~~~~~~~l~~~d~~~~  656 (721)
                      ...-...+.|++++.+++
T Consensus       170 q~~~~~~GkIlRi~~dg~  187 (463)
T 2wg3_C          170 DGLSDFTGSVLRLDVDTD  187 (463)
T ss_dssp             TTCCSCTTEEEEEBCCCC
T ss_pred             cCcCCCCeeEEEEECCCC
Confidence            001233567899998874

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=92.52  E-value=2.9  Score=45.40  Aligned_cols=70  Identities=17%  Similarity=0.271  Sum_probs=49.5

Q ss_pred             eeeEEccCCCEEEEEEccCCC-----CCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          561 TMCNWSPDGEWIAFASDRDNP-----GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       561 ~~~~~SpDG~~l~~~~~~~~~-----~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      ..++|+|+|+.++........     ..+...++.++..+++++++........+..+.|+|||++|++.....+
T Consensus       479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvniQHPG  553 (592)
T 3zwu_A          479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQHPG  553 (592)
T ss_dssp             EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEESTT
T ss_pred             cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEEECCC
Confidence            468999999844433322100     1244678999999999888776545567789999999999988766543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.45  E-value=5.1  Score=44.87  Aligned_cols=203  Identities=8%  Similarity=0.044  Sum_probs=100.3

Q ss_pred             CcEEEEECCCCceEEEe-e------c--C-ceeeEEcC-CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc
Q 004971          439 PGVYVVNSDGSNRRQVY-F------K--N-AFSTVWDP-VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT  507 (721)
Q Consensus       439 ~~l~v~d~~~g~~~~l~-~------~--~-~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~  507 (721)
                      ..++++|+.+++...+. .      .  . ......-+ +++.+++.....   .......+|.++....    ....+.
T Consensus       412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~---~~~~~~dv~~yd~~t~----~W~~~~  484 (695)
T 2zwa_A          412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKA---PHQGLSDNWIFDMKTR----EWSMIK  484 (695)
T ss_dssp             CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSS---TTCBCCCCEEEETTTT----EEEECC
T ss_pred             CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCC---CCCccccEEEEeCCCC----cEEECC
Confidence            46889999888766655 2      0  1 11222222 554443432110   0111234666666553    445554


Q ss_pred             cCC-CCCcceEEc-cCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC------CCcCceeeEEccC-CCEEEEEEcc
Q 004971          508 TNG-KNNAFPSVS-PDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE------GPWSDTMCNWSPD-GEWIAFASDR  578 (721)
Q Consensus       508 ~~~-~~~~~~~~S-pDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~------~~~~~~~~~~SpD-G~~l~~~~~~  578 (721)
                      ... ....+.+.. .+++.+++....... .++++|+.+.+   -..+..      .........+..+ ++.++++...
T Consensus       485 ~~p~~R~~h~~~~~~~~~iyv~GG~~~~~-~v~~yd~~t~~---W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~  560 (695)
T 2zwa_A          485 SLSHTRFRHSACSLPDGNVLILGGVTEGP-AMLLYNVTEEI---FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGF  560 (695)
T ss_dssp             CCSBCCBSCEEEECTTSCEEEECCBCSSC-SEEEEETTTTE---EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBC
T ss_pred             CCCCCcccceEEEEcCCEEEEECCCCCCC-CEEEEECCCCc---eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcC
Confidence            433 222233333 477766665543323 89999999877   333332      1222223555655 4444444332


Q ss_pred             CCCCCCceeEEEEecCCCc------eEEeeecCCCCCcC-CeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEE
Q 004971          579 DNPGSGSFEMYLIHPNGTG------LRKLIQSGSAGRAN-HPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKI  651 (721)
Q Consensus       579 ~~~~~~~~~i~~~d~~~~~------~~~l~~~~~~~~~~-~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  651 (721)
                      .........+++||+.+.+      -..+.......... ......|++.+++.......         ......++++|
T Consensus       561 ~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~---------~~~~~~~v~~y  631 (695)
T 2zwa_A          561 MDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSG---------LFDRTNSIISL  631 (695)
T ss_dssp             TTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSC---------CCCTTTSEEEE
T ss_pred             CCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCC---------CCCCCCeEEEE
Confidence            1100123589999998887      44554311112222 23333335555553332210         01223579999


Q ss_pred             EcCCCCeEEe
Q 004971          652 KLDGSDLKRL  661 (721)
Q Consensus       652 d~~~~~~~~l  661 (721)
                      |+.+.+.+.+
T Consensus       632 d~~t~~W~~~  641 (695)
T 2zwa_A          632 DPLSETLTSI  641 (695)
T ss_dssp             ETTTTEEEEC
T ss_pred             ECCCCeEEEe
Confidence            9998877743

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=92.35  E-value=5.1  Score=42.21  Aligned_cols=130  Identities=4%  Similarity=-0.050  Sum_probs=67.6

Q ss_pred             cCceeeEEcCCCC-eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc----C-----CCCCcceEEccC---CC
Q 004971          457 KNAFSTVWDPVRE-AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT----N-----GKNNAFPSVSPD---GK  523 (721)
Q Consensus       457 ~~~~~~~~spdg~-~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~----~-----~~~~~~~~~SpD---g~  523 (721)
                      .....++|.|||+ +|+++.       ..+.  |+.++.++.........+..    .     ......++|+||   ..
T Consensus        14 ~~P~~~a~~pdG~~rl~V~e-------r~G~--i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~   84 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILE-------KEGY--VKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG   84 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEE-------TTTE--EEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC
T ss_pred             CCceEEEECCCCCeEEEEEe-------CCce--EEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC
Confidence            4567889999997 677765       2344  44444333200011122211    1     123455899997   44


Q ss_pred             EEEEEEeeCC----------ceeEEEEECCCC--------cccceEECc--CCCcCceeeEEccCCCEEEEEEccCCC--
Q 004971          524 WIVFRSTRTG----------YKNLYIMDAEGG--------EGYGLHRLT--EGPWSDTMCNWSPDGEWIAFASDRDNP--  581 (721)
Q Consensus       524 ~l~~~s~~~g----------~~~l~~~d~~~g--------~~~~~~~l~--~~~~~~~~~~~SpDG~~l~~~~~~~~~--  581 (721)
                      +|++......          ...|.++.+..+        +.+.+..+.  ........++|.|||+ |+++..+...  
T Consensus        85 ~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd~~~~~  163 (463)
T 2wg3_C           85 KLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGDGMITL  163 (463)
T ss_dssp             EEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECCTTCCH
T ss_pred             EEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCCCCCCC
Confidence            5555433211          147877877532        111122222  1122346799999995 6666554310  


Q ss_pred             ---------CCCceeEEEEecCCC
Q 004971          582 ---------GSGSFEMYLIHPNGT  596 (721)
Q Consensus       582 ---------~~~~~~i~~~d~~~~  596 (721)
                               ......|+++++++.
T Consensus       164 ~~~~~~q~~~~~~GkIlRi~~dg~  187 (463)
T 2wg3_C          164 DDMEEMDGLSDFTGSVLRLDVDTD  187 (463)
T ss_dssp             HHHHHCTTCCSCTTEEEEEBCCCC
T ss_pred             CccccccCcCCCCeeEEEEECCCC
Confidence                     012347999998873

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=91.78  E-value=12  Score=37.92  Aligned_cols=194  Identities=16%  Similarity=0.120  Sum_probs=95.3

Q ss_pred             EEEEECCCC--ceEEeeccc----CCCCcccCcEEc---CC---CCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee
Q 004971          349 IELFDLVKN--KFIELTRFV----SPKTHHLNPFIS---PD---SSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL  416 (721)
Q Consensus       349 l~l~dl~tg--~~~~l~~~~----~~~~~~~~~~~S---pd---g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  416 (721)
                      |.++|+.++  +......+.    ........+++.   |+   ++..+|..+...       ..|.+.++..+...-..
T Consensus       125 Lv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~-------~gLIVydl~~~~swRv~  197 (381)
T 3q6k_A          125 IVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLR-------GALFIYDHKKQDSWNVT  197 (381)
T ss_dssp             EEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTT-------TEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCC-------CcEEEEECCCCcEEEEc
Confidence            666677766  533221111    112223445555   22   256667666554       56888888766321111


Q ss_pred             cccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEeecCceeeEEcCC----CCeEEEEecCCCCCCCCCcEEEEEE
Q 004971          417 FRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPV----REAVVYTSGGPEFASESSEVDIISI  492 (721)
Q Consensus       417 ~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~spd----g~~la~~~~~~~~~~~~~~~~i~~~  492 (721)
                            ...+.|| ....+.-.+.-+.          + ...+..++.||+    +++|+|...        ...++|.+
T Consensus       198 ------~~~~~pd-~~~~~~i~G~~~~----------~-~~Gi~gIaLsp~~~~~~~~LYf~pl--------ss~~ly~V  251 (381)
T 3q6k_A          198 ------HPTFKAE-RPTKFDYGGKEYE----------F-KAGIFGITLGDRDSEGNRPAYYLAG--------SAIKVYSV  251 (381)
T ss_dssp             ------CGGGSCC-SCEEEEETTEEEE----------E-CCCEEEEEECCCCTTSCCEEEEEES--------SCSEEEEE
T ss_pred             ------cCCCccc-cCcceEECCEEeE----------e-ccCceEEEecCCcCCCCeEEEEEEC--------CCCcEEEE
Confidence                  1234565 2222222222221          1 346788999998    899999863        34567777


Q ss_pred             Ecc---CCCCccceEEcccCC--CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc--cceEECcCCC--cCceee
Q 004971          493 NVD---DVDGVSAVRRLTTNG--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG--YGLHRLTEGP--WSDTMC  563 (721)
Q Consensus       493 ~~~---~~~~~~~~~~l~~~~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~--~~~~~l~~~~--~~~~~~  563 (721)
                      .+.   ........+.+...+  ......+..+....|+|..-.  ...|.+|+..+...  .....+....  .....+
T Consensus       252 ~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~--~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~  329 (381)
T 3q6k_A          252 NTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEAN--TKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDI  329 (381)
T ss_dssp             EHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESS--SSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEE
T ss_pred             EHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEecc--CCeEEEEeCCCCccccCceEEEEECCCccccCeE
Confidence            632   110111333333322  111123454333456666532  66899999875111  1133333322  123456


Q ss_pred             EEccCCCEEEEEEcc
Q 004971          564 NWSPDGEWIAFASDR  578 (721)
Q Consensus       564 ~~SpDG~~l~~~~~~  578 (721)
                      .+.+||. |++.+++
T Consensus       330 ~i~~~g~-Lwv~sn~  343 (381)
T 3q6k_A          330 SVDSKGG-LWFMSNG  343 (381)
T ss_dssp             EECTTSC-EEEEECS
T ss_pred             EECCCCe-EEEEECc
Confidence            6666664 6666554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=91.66  E-value=9.8  Score=39.12  Aligned_cols=143  Identities=13%  Similarity=0.061  Sum_probs=89.9

Q ss_pred             CCceeCcCCCEEEEEeCCcEEEEECC-CCceEEEe-e-----cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEc
Q 004971          422 SFPSFSPKGDRIAFVEFPGVYVVNSD-GSNRRQVY-F-----KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINV  494 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~~~~l~v~d~~-~g~~~~l~-~-----~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~  494 (721)
                      ++...+.+|..|++..++.|+..++. ....+.+. +     ..+..+..||+|+.||+..        ...+.|..+..
T Consensus        24 R~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g--------~~~V~Vv~LP~   95 (452)
T 3pbp_A           24 RYIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN--------DNEIFVMEVPW   95 (452)
T ss_dssp             EEEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC--------SSEEEEEECCT
T ss_pred             cEEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec--------CCeEEEEEecC
Confidence            34455678888988888889888887 44455554 2     1467899999999999985        35666666663


Q ss_pred             cCCCCc-------cce--EEccc----CCCCCcceEEccC---CCEEEEEEeeCCceeEEEEECCCCcccceEECcCC--
Q 004971          495 DDVDGV-------SAV--RRLTT----NGKNNAFPSVSPD---GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG--  556 (721)
Q Consensus       495 ~~~~~~-------~~~--~~l~~----~~~~~~~~~~SpD---g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~--  556 (721)
                      ......       ...  ..+..    ....+....|+|-   |..|++...   +..|++||+.....+ +..+...  
T Consensus        96 ~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLts---D~~Ir~yDl~~s~~~-P~~L~k~~~  171 (452)
T 3pbp_A           96 GYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKE---DDTITMFDILNSQEK-PIVLNKPNN  171 (452)
T ss_dssp             TCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEET---TSCEEEEETTCTTSC-CEEESCCCS
T ss_pred             ccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEec---CCEEEEEEcccCCCC-Ccchhcccc
Confidence            221000       011  12211    1234566788885   457888877   789999999864321 2222211  


Q ss_pred             -------CcCceeeEEccCCCEEEEEE
Q 004971          557 -------PWSDTMCNWSPDGEWIAFAS  576 (721)
Q Consensus       557 -------~~~~~~~~~SpDG~~l~~~~  576 (721)
                             ...+.+++|+++|=.|+...
T Consensus       172 ~fg~d~~~~ev~S~~Fg~~~lTLYvl~  198 (452)
T 3pbp_A          172 SFGLDARVNDITDLEFSKDGLTLYCLN  198 (452)
T ss_dssp             EEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred             ccCCCcccceEEEEEEcCCCcEEEEEe
Confidence                   13356788999887777765

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=90.96  E-value=10  Score=38.49  Aligned_cols=156  Identities=9%  Similarity=0.100  Sum_probs=86.3

Q ss_pred             CEEEEE---eCCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc
Q 004971          431 DRIAFV---EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT  507 (721)
Q Consensus       431 ~~la~~---~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~  507 (721)
                      +..||.   ....|.++|+.+++..++..     ..+.|| ....+...+                        ....+.
T Consensus       170 ~~~aYItD~~~~gLIVydl~~~~swRv~~-----~~~~pd-~~~~~~i~G------------------------~~~~~~  219 (381)
T 3q6k_A          170 ETFVYITNFLRGALFIYDHKKQDSWNVTH-----PTFKAE-RPTKFDYGG------------------------KEYEFK  219 (381)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC-----GGGSCC-SCEEEEETT------------------------EEEEEC
T ss_pred             ccEEEEEcCCCCcEEEEECCCCcEEEEcc-----CCCccc-cCcceEECC------------------------EEeEec
Confidence            456666   36789999999998777762     124455 222222211                        212222


Q ss_pred             cCCCCCcceEEccC----CCEEEEEEeeCCceeEEEEE---CCCCcc-cceEECcCCC--cCceeeEEccCCCEEEEEEc
Q 004971          508 TNGKNNAFPSVSPD----GKWIVFRSTRTGYKNLYIMD---AEGGEG-YGLHRLTEGP--WSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       508 ~~~~~~~~~~~SpD----g~~l~~~s~~~g~~~l~~~d---~~~g~~-~~~~~l~~~~--~~~~~~~~SpDG~~l~~~~~  577 (721)
                         ..+..+++||+    +++|+|..-.  ..++|.+.   +..... ..++.+....  ..-...+.++....|+|+.-
T Consensus       220 ---~Gi~gIaLsp~~~~~~~~LYf~pls--s~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~  294 (381)
T 3q6k_A          220 ---AGIFGITLGDRDSEGNRPAYYLAGS--AIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEA  294 (381)
T ss_dssp             ---CCEEEEEECCCCTTSCCEEEEEESS--CSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEES
T ss_pred             ---cCceEEEecCCcCCCCeEEEEEECC--CCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEec
Confidence               14567899998    8999999763  34788876   222211 1133333221  11123456533335677665


Q ss_pred             cCCCCCCceeEEEEecCC-----CceEEeeecCCCCCcCCeEECCCCCEEEEEEec
Q 004971          578 RDNPGSGSFEMYLIHPNG-----TGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY  628 (721)
Q Consensus       578 ~~~~~~~~~~i~~~d~~~-----~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~  628 (721)
                      ..      ..|+.|+..+     +....+.....-.....+.+..||. |++.+++
T Consensus       295 ~~------~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~-Lwv~sn~  343 (381)
T 3q6k_A          295 NT------KQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGG-LWFMSNG  343 (381)
T ss_dssp             SS------SEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSC-EEEEECS
T ss_pred             cC------CeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCe-EEEEECc
Confidence            43      4899999876     2334454431112335567777775 6666654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=90.92  E-value=14  Score=37.00  Aligned_cols=157  Identities=7%  Similarity=-0.066  Sum_probs=73.7

Q ss_pred             CcEEEEECCCCceEEEeec---Cce-eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC---C
Q 004971          439 PGVYVVNSDGSNRRQVYFK---NAF-STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG---K  511 (721)
Q Consensus       439 ~~l~v~d~~~g~~~~l~~~---~~~-~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~---~  511 (721)
                      ..++++|+.+.+.+.+..-   ... .....-++ .|++.............+.+|+++....    ....+....   .
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~~d~d~~~~----~W~~~~~~~~~~~  242 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGD-KTWLINGEAKPGLRTDAVFELDFTGNNL----KWNKLAPVSSPDG  242 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETT-EEEEECCEEETTEECCCEEEEECC---C----EEEECCCSSTTTC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECC-EEEEEeeecCCCcccCceEEEEecCCCC----cEEecCCCCCCcc
Confidence            5799999998887666521   111 11222234 4444421000000122344444422332    444443322   1


Q ss_pred             CCcceEEccCCCEEEEEEeeCC-------------------ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEE
Q 004971          512 NNAFPSVSPDGKWIVFRSTRTG-------------------YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWI  572 (721)
Q Consensus       512 ~~~~~~~SpDg~~l~~~s~~~g-------------------~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l  572 (721)
                      .....+...+++.+++......                   ...++++|+.+.+-..+..+......  ..+..-+++.+
T Consensus       243 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~  320 (357)
T 2uvk_A          243 VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLL  320 (357)
T ss_dssp             CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEEE
T ss_pred             cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEE
Confidence            1222245556665555432110                   14688999998775445444443332  23344577777


Q ss_pred             EEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971          573 AFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ  603 (721)
Q Consensus       573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  603 (721)
                      +++..+... ....+++++++++++...+..
T Consensus       321 v~GG~~~~~-~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          321 IIGGETAGG-KAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             EEEEECGGG-CEEEEEEEEEC-CCSCEEEC-
T ss_pred             EEeeeCCCC-CEeeeEEEEEEcCcEeEeeec
Confidence            777654310 113689999999988766543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.10  E-value=22  Score=37.89  Aligned_cols=197  Identities=12%  Similarity=0.105  Sum_probs=104.5

Q ss_pred             CCCEEEEEe--CCcEEEEECCCCceEEEe----ecCceeeEEc--CCCCeEEEEecC--------CCCC-CCCCcEEEE-
Q 004971          429 KGDRIAFVE--FPGVYVVNSDGSNRRQVY----FKNAFSTVWD--PVREAVVYTSGG--------PEFA-SESSEVDII-  490 (721)
Q Consensus       429 DG~~la~~~--~~~l~v~d~~~g~~~~l~----~~~~~~~~~s--pdg~~la~~~~~--------~~~~-~~~~~~~i~-  490 (721)
                      ||++|....  +.++-+++++.=+..+|.    ...+....+-  |+-.+++..+.-        ...+ ....+..+| 
T Consensus       141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~  220 (638)
T 3sbq_A          141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN  220 (638)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred             eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence            677776663  678999999887766655    2233344443  777777766531        1111 111122333 


Q ss_pred             EEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeC------------CceeEEEEE-----------------
Q 004971          491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT------------GYKNLYIMD-----------------  541 (721)
Q Consensus       491 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~------------g~~~l~~~d-----------------  541 (721)
                      .++.++.   ...-++.- ++.......+++|+|.++.+..+            ....+.+++                 
T Consensus       221 ~iD~~tm---~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~  296 (638)
T 3sbq_A          221 AIDAETM---EMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLG  296 (638)
T ss_dssp             EEETTTC---SEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred             EEcCCcc---EEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEEC
Confidence            3444332   11122222 23556678899999998887542            122333333                 


Q ss_pred             --------CCC----CcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC------Cce-----
Q 004971          542 --------AEG----GEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG------TGL-----  598 (721)
Q Consensus       542 --------~~~----g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~------~~~-----  598 (721)
                              ...    ++ ..+..+... -....+..+|||++++....-.      ..+.++|.+.      ++.     
T Consensus       297 g~gv~ViD~~~~~~~~~-~~~~~iP~p-ksPHGv~vsPDGkyi~v~GKLs------ptvtV~d~~k~~~~~~~k~~~~~~  368 (638)
T 3sbq_A          297 DSKTPVLDGRKKDGKDS-KFTRYVPVP-KNPHGCNTSSDGKYFIAAGKLS------PTCSMIAIDKLPDLFAGKLADPRD  368 (638)
T ss_dssp             TCCCCEEECSCBTTBCC-SSEEEEEES-SSCCCEEECTTSCEEEEECTTS------SBEEEEEGGGHHHHHTTCCSCGGG
T ss_pred             CCCeeEEccccccccCC-ceEEEEeCC-CCCcceeeCCCCCEEEEcCCCC------CeEEEEEeehhhhhhhccccCccc
Confidence                    322    11 001111111 1235678999999998877543      3788888753      111     


Q ss_pred             EEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971          599 RKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD  654 (721)
Q Consensus       599 ~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  654 (721)
                      ........+-...+.+|.++|  .+|++---.               ++|..|+++
T Consensus       369 ~~~ae~e~GlGPlHt~Fd~~G--~aYTtlfid---------------SqvvkWni~  407 (638)
T 3sbq_A          369 VIVGEPELGLGPLHTTFDGRG--NAYTTLFID---------------SQVVKWNME  407 (638)
T ss_dssp             GEEECCBCCSCEEEEEECSSS--EEEEEETTT---------------TEEEEEEHH
T ss_pred             ceEeeccCCCcccEEEECCCC--ceEeeeeec---------------ceEEEEecc
Confidence            111111123345678999999  455554322               368888874

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=88.82  E-value=3.5  Score=44.15  Aligned_cols=70  Identities=20%  Similarity=0.315  Sum_probs=49.8

Q ss_pred             ceeeEEccCCCEEEEEEccCCC------CCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          560 DTMCNWSPDGEWIAFASDRDNP------GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       560 ~~~~~~SpDG~~l~~~~~~~~~------~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      ...+.|+++|. |.|+.+....      ..+...+|+++..+++++++.........+.++||||+++|++.....+
T Consensus       478 PDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQHPG  553 (592)
T 4a9v_A          478 PDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQHPG  553 (592)
T ss_dssp             EEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEESTT
T ss_pred             CCceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEeCCC
Confidence            45789999997 5664432110      1134589999999999888765323356789999999999998887655

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=87.82  E-value=23  Score=35.09  Aligned_cols=168  Identities=11%  Similarity=0.036  Sum_probs=82.1

Q ss_pred             ceeCcCCCEEEEEeCCcEEEEECCCCc-eEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC
Q 004971          424 PSFSPKGDRIAFVEFPGVYVVNSDGSN-RRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG  499 (721)
Q Consensus       424 ~~~SpDG~~la~~~~~~l~v~d~~~g~-~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~  499 (721)
                      +.+.++++.++....+.|+.. .++|+ -+.+.   ...+..+.++|+++.+++...        +  .+|.....++  
T Consensus       127 i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------G--~~~~S~d~gG--  193 (327)
T 2xbg_A          127 IKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR--------G--SFYSTWEPGQ--  193 (327)
T ss_dssp             EEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETT--------S--SEEEEECTTC--
T ss_pred             EEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECC--------C--cEEEEeCCCC--
Confidence            344555654444445555543 44443 44444   334567888999887766532        2  2344332211  


Q ss_pred             ccceEEccc-CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC----CCcCceeeEEccCCCEEEE
Q 004971          500 VSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE----GPWSDTMCNWSPDGEWIAF  574 (721)
Q Consensus       500 ~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~----~~~~~~~~~~SpDG~~l~~  574 (721)
                       ..-+.+.. .......++++++++.++ ...   ...+++.+.+.|+.  -..+..    ....+..+++.++++.++.
T Consensus       194 -~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~---~G~~~~s~~D~G~t--W~~~~~~~~~~~~~~~~v~~~~~~~~~~~  266 (327)
T 2xbg_A          194 -TAWEPHNRTTSRRLHNMGFTPDGRLWM-IVN---GGKIAFSDPDNSEN--WGELLSPLRRNSVGFLDLAYRTPNEVWLA  266 (327)
T ss_dssp             -SSCEEEECCSSSCEEEEEECTTSCEEE-EET---TTEEEEEETTEEEE--ECCCBCTTSSCCSCEEEEEESSSSCEEEE
T ss_pred             -CceeECCCCCCCccceeEECCCCCEEE-EeC---CceEEEecCCCCCe--eEeccCCcccCCcceEEEEecCCCEEEEE
Confidence             12222322 123445677889987544 333   34566654443432  222221    1123467788888775554


Q ss_pred             EEccCCCCCCceeEEEEecCCCceEEeeecC--CCCCcCCeEECCCCC
Q 004971          575 ASDRDNPGSGSFEMYLIHPNGTGLRKLIQSG--SAGRANHPYFSPDGK  620 (721)
Q Consensus       575 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~~~~~~~~~SpDG~  620 (721)
                      .. ..       .||+ ..++|+.-......  ....+..+.|.++++
T Consensus       267 g~-~g-------~i~~-S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~  305 (327)
T 2xbg_A          267 GG-AG-------ALLC-SQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ  305 (327)
T ss_dssp             ES-TT-------CEEE-ESSTTSSCEECGGGTTSSSCCCEEEEEETTE
T ss_pred             eC-CC-------eEEE-eCCCCcccEEcCccCCCCCCeEEEEEECCCc
Confidence            33 32       4654 44555433322211  123456677765544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=87.59  E-value=13  Score=38.20  Aligned_cols=104  Identities=13%  Similarity=0.192  Sum_probs=61.7

Q ss_pred             CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc----------ceE--ECcC----CCcCceeeEEccC---CCEE
Q 004971          512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY----------GLH--RLTE----GPWSDTMCNWSPD---GEWI  572 (721)
Q Consensus       512 ~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~----------~~~--~l~~----~~~~~~~~~~SpD---G~~l  572 (721)
                      .+..+..||+|++|++..    ..+|.++.+..+...          +.+  .+..    ....+..+.|.|-   |..|
T Consensus        67 ~i~qlvlSpsG~lLAl~g----~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~L  142 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN----DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCI  142 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC----SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEE
T ss_pred             ceeEEEECCCCCEEEEec----CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeE
Confidence            456789999999999987    467888777632210          011  1111    1234677889885   4578


Q ss_pred             EEEEccCCCCCCceeEEEEecCCCceEEe-eecC--------CCCCcCCeEECCCCCEEEEEE
Q 004971          573 AFASDRDNPGSGSFEMYLIHPNGTGLRKL-IQSG--------SAGRANHPYFSPDGKSIVFTS  626 (721)
Q Consensus       573 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l-~~~~--------~~~~~~~~~~SpDG~~l~~~~  626 (721)
                      ++...+.       .|++||+.....+.. ....        ....+.+++|+.+|=.||...
T Consensus       143 VVLtsD~-------~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~  198 (452)
T 3pbp_A          143 VVLKEDD-------TITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN  198 (452)
T ss_dssp             EEEETTS-------CEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred             EEEecCC-------EEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence            8887775       899999976432111 1100        012334567777665565544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=85.74  E-value=11  Score=35.03  Aligned_cols=142  Identities=17%  Similarity=0.186  Sum_probs=74.0

Q ss_pred             CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC--Cc-cceEEcccCC-CCCcceEEccCCCEEEEEEeeCC
Q 004971          458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD--GV-SAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTG  533 (721)
Q Consensus       458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~--~~-~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g  533 (721)
                      ....++|+|||...++ ..        +  .||..+..+..  .. ...+.|-... ..-..+.|.|+|...+. +    
T Consensus        42 ~~~~laf~P~G~LYaV-~~--------G--~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~----  105 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV-LN--------D--KIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-S----  105 (236)
T ss_dssp             TCSEEEECTTSCEEEE-ET--------T--EEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-E----
T ss_pred             cceeEEECCCccEEEE-eC--------C--eEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-C----
Confidence            4557888888874444 32        2  46766653310  00 1223443333 12345778899985555 3    


Q ss_pred             ceeEEEEECCCCccc----ceEECcCCCc-CceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc-------eEEe
Q 004971          534 YKNLYIMDAEGGEGY----GLHRLTEGPW-SDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG-------LRKL  601 (721)
Q Consensus       534 ~~~l~~~d~~~g~~~----~~~~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~-------~~~l  601 (721)
                      +..||+++..+....    ....+-...+ ....+.++|||..-++.  +.       .+|+...-.+.       ...+
T Consensus       106 dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg-------~lyr~~~P~~~~~~wl~~~~~~  176 (236)
T 1tl2_A          106 KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQ-------QFYKALPPVSNQDNWLARATKI  176 (236)
T ss_dssp             TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TT-------EEEEECCCSSTTCCHHHHCEEE
T ss_pred             CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CC-------cEEecCCCCCCCccccccccee
Confidence            478999987432210    0122222222 34678999999844444  43       57765433211       2222


Q ss_pred             eecCCCCCcCCeEECCCCCEEEEE
Q 004971          602 IQSGSAGRANHPYFSPDGKSIVFT  625 (721)
Q Consensus       602 ~~~~~~~~~~~~~~SpDG~~l~~~  625 (721)
                      ... .......+.|+++|...+..
T Consensus       177 g~~-g~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          177 GQG-GWDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             ESS-SGGGEEEEEECTTSCEEEEE
T ss_pred             ccC-CcceEEEEEECCCCcEEEEe
Confidence            211 22344567788888866554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=85.57  E-value=27  Score=41.91  Aligned_cols=175  Identities=10%  Similarity=0.113  Sum_probs=92.7

Q ss_pred             ceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCce-EEEe-ecCceeeEEcCCCCeEEEEecC
Q 004971          400 NQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNR-RQVY-FKNAFSTVWDPVREAVVYTSGG  477 (721)
Q Consensus       400 ~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~-~~l~-~~~~~~~~~spdg~~la~~~~~  477 (721)
                      ..+.+.++..+... +..+....+.-.+|..+.||.-....|.++|+++... +... ...+..=.|-. .+.|+.++  
T Consensus        48 ~~vvIidl~~~~~~-~rrpi~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWis-~~~l~lVT--  123 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNP-IRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVALVT--  123 (1630)
T ss_pred             ceEEEEECCCCCCc-ccccccchhhccCCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEecC-CCeeEEEc--
Confidence            46788888765432 3233445556778888877777788899999987653 2222 33444444543 34566654  


Q ss_pred             CCCCCCCCcEEEEEEEccCCCCccceEEcccC----CCCCcceEEccCCCEEEEEEeeCC----ceeEEEEECCCCcccc
Q 004971          478 PEFASESSEVDIISINVDDVDGVSAVRRLTTN----GKNNAFPSVSPDGKWIVFRSTRTG----YKNLYIMDAEGGEGYG  549 (721)
Q Consensus       478 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~SpDg~~l~~~s~~~g----~~~l~~~d~~~g~~~~  549 (721)
                            ...+.-|.+..+..    ..+.+..+    ...+.....++|.+|++...-..+    .+.+.+++.+.+.   
T Consensus       124 ------~~aVyHW~~~~~s~----P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~---  190 (1630)
T 1xi4_A          124 ------DNAVYHWSMEGESQ----PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---  190 (1630)
T ss_pred             ------CCeEEEeccCCCCc----cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc---
Confidence                  35566666643221    22222222    234555688999999998764321    2345555554332   


Q ss_pred             eEECcCCCcCceee---EEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971          550 LHRLTEGPWSDTMC---NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       550 ~~~l~~~~~~~~~~---~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      ...+..+...-...   ...+..+.++|+....    .+..|.++++..
T Consensus       191 sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~----~g~kLhi~Ei~~  235 (1630)
T 1xi4_A          191 SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ----AGGKLHIIEVGT  235 (1630)
T ss_pred             chhhhHhHhhhheeccCCCCCCceEEEEEEecC----CCceEEEEecCC
Confidence            12222221110111   1122334455555432    235889988854

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=80.59  E-value=46  Score=32.76  Aligned_cols=99  Identities=11%  Similarity=0.095  Sum_probs=52.4

Q ss_pred             CCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEE
Q 004971          512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL  590 (721)
Q Consensus       512 ~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~  590 (721)
                      ....++++|+++.+++..    ...||+-+-.+|+.  -..+. ........++++|+|+.++ ....+       .+++
T Consensus       164 ~~~~~~~~~~~~~~~~g~----~G~~~~S~d~gG~t--W~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G-------~~~~  229 (327)
T 2xbg_A          164 VMRNLNRSPSGEYVAVSS----RGSFYSTWEPGQTA--WEPHNRTTSRRLHNMGFTPDGRLWM-IVNGG-------KIAF  229 (327)
T ss_dssp             CEEEEEECTTSCEEEEET----TSSEEEEECTTCSS--CEEEECCSSSCEEEEEECTTSCEEE-EETTT-------EEEE
T ss_pred             ceEEEEEcCCCcEEEEEC----CCcEEEEeCCCCCc--eeECCCCCCCccceeEECCCCCEEE-EeCCc-------eEEE
Confidence            455678899988776543    34677654332332  22222 1223456788899987544 44332       5776


Q ss_pred             EecCCCceEEeeecC---CCCCcCCeEECCCCCEEEE
Q 004971          591 IHPNGTGLRKLIQSG---SAGRANHPYFSPDGKSIVF  624 (721)
Q Consensus       591 ~d~~~~~~~~l~~~~---~~~~~~~~~~SpDG~~l~~  624 (721)
                      .+.++|+.-.....+   ....+..+.+.++++.++.
T Consensus       230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~  266 (327)
T 2xbg_A          230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLA  266 (327)
T ss_dssp             EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEE
T ss_pred             ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEE
Confidence            644444332221111   1123456778888775443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	721
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	2e-13
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	5e-08
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	3e-07
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	2e-04
d1k32a2	281	b.68.7.1 (A:39-319) Tricorn protease N-terminal do	6e-13
d1k32a2	281	b.68.7.1 (A:39-319) Tricorn protease N-terminal do	8e-11
d1k32a2	281	b.68.7.1 (A:39-319) Tricorn protease N-terminal do	8e-10
d1k32a2	281	b.68.7.1 (A:39-319) Tricorn protease N-terminal do	8e-08
d1k32a2	281	b.68.7.1 (A:39-319) Tricorn protease N-terminal do	6e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-05
d1xfda1	465	b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-lik	1e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.003
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.002
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.004
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	0.003

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 68.7 bits (166), Expect = 2e-13
 Identities = 47/304 (15%), Positives = 90/304 (29%), Gaps = 46/304 (15%)

Query: 381 SSRVGYHKCRGGSTRE--------DGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR 432
            +R+ Y     G            DG NQ ++   +SP P +S        P++SP G +
Sbjct: 3   RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVV--HRSPQPLMS--------PAWSPDGSK 52

Query: 433 IAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI 492
           +A+V     +         + +           P        S      + +        
Sbjct: 53  LAYV----TFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLN 108

Query: 493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR 552
                     +R++T    NN  P+  PD + + F S + G   +Y ++        ++ 
Sbjct: 109 LYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN--------ING 160

Query: 553 LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH 612
                 +                       +G  +        TG  +++ S        
Sbjct: 161 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF--LDET 218

Query: 613 PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPA 672
           P  +P+G  ++++S  G                  +  +  DG    RL     +   PA
Sbjct: 219 PSLAPNGTMVIYSSSQGM--------------GSVLNLVSTDGRFKARLPATDGQVKFPA 264

Query: 673 WGPR 676
           W P 
Sbjct: 265 WSPY 268

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 52.6 bits (124), Expect = 5e-08
 Identities = 40/245 (16%), Positives = 90/245 (36%), Gaps = 19/245 (7%)

Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR 432
           ++P  SPD S++ Y      +     +  ++       +  ++ F      P+FSP G +
Sbjct: 42  MSPAWSPDGSKLAYV-----TFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSK 96

Query: 433 IAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI 492
           +AF       +             +       +        +      + ++    +  +
Sbjct: 97  LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 156

Query: 493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR 552
           N++        +R+T  G  N    VS DGK++V  S+  G +++   D   G      +
Sbjct: 157 NINGGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----VQ 208

Query: 553 LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH 612
           +    + D   + +P+G  + ++S +         + L+  +G    +L    + G+   
Sbjct: 209 VLSSTFLDETPSLAPNGTMVIYSSSQG----MGSVLNLVSTDGRFKARL--PATDGQVKF 262

Query: 613 PYFSP 617
           P +SP
Sbjct: 263 PAWSP 267

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 38/172 (22%), Positives = 60/172 (34%), Gaps = 23/172 (13%)

Query: 459 AFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV 518
           AF T     R A V  + G +F  E        + V D DG      +  + +    P+ 
Sbjct: 1   AFRT-----RIAYVVQTNGGQFPYE--------LRVSDYDG-YNQFVVHRSPQPLMSPAW 46

Query: 519 SPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDR 578
           SPDG  + + +  +G   L I     G    +      P  +    +SPDG  +AFA  +
Sbjct: 47  SPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS---FPRHNGAPAFSPDGSKLAFALSK 103

Query: 579 DNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
               +                    +        P + PD +++ FTSD  G
Sbjct: 104 TGSLNLYVMDLASGQ------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG 149

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 35/250 (14%), Positives = 71/250 (28%), Gaps = 32/250 (12%)

Query: 209 RRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVEN 268
             +        SPA SP G   A  ++ +      ++ L+      +            N
Sbjct: 32  FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH------N 85

Query: 269 GGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATS 328
           G      D S L F         + V  +   Q          I++VT    +   P   
Sbjct: 86  GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----------IRQVTDGRSNNTEPTWF 135

Query: 329 PGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHK 388
           P +      + +        + +                  T   +     D S  G   
Sbjct: 136 PDSQNLAFTSDQAGRPQVYKVNING----------GAPQRITWEGSQNQDADVSSDGKFM 185

Query: 389 CRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPG----VYVV 444
                +   G   +  +++ +    +    F    PS +P G  + +    G    + +V
Sbjct: 186 VM--VSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLV 243

Query: 445 NSDGSNRRQV 454
           ++DG  + ++
Sbjct: 244 STDGRFKARL 253

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 67.9 bits (164), Expect = 6e-13
 Identities = 32/257 (12%), Positives = 68/257 (26%), Gaps = 29/257 (11%)

Query: 422 SFPSFSPKGDRIAFVEFPG-------VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYT 474
           +   F P G +IA     G       +Y  N +    +++ + +  ST      +   + 
Sbjct: 44  NNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFD 103

Query: 475 SGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY 534
             G    S  +     S+          +  +  N         +   + I   +    +
Sbjct: 104 PDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPH 163

Query: 535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN 594
              Y     G     ++        D   + S             +      ++Y    +
Sbjct: 164 WKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGF-GQIYSTDLD 222

Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD 654
           G  LRK             + + DG+ I+F+                    G I+    D
Sbjct: 223 GKDLRKHTSFTDY---YPRHLNTDGRRILFSKG------------------GSIYIFNPD 261

Query: 655 GSDLKRLTQNSFEDGTP 671
              ++++     E    
Sbjct: 262 TEKIEKIEIGDLESPED 278

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 61.3 bits (147), Expect = 8e-11
 Identities = 37/286 (12%), Positives = 73/286 (25%), Gaps = 28/286 (9%)

Query: 172 PILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTA 231
           P + G+ +I+V   +           ++  +LK+G TR++        +    P G+  A
Sbjct: 8   PDIHGDRIIFVCCDD-----------LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIA 56

Query: 232 VASY---GNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEE 288
           +           D             +T    +            +  +  L     + +
Sbjct: 57  IRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQ 116

Query: 289 DDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRH 348
                     +   G+            P  L   T        + I   T        +
Sbjct: 117 PFSSMTCLYRVENDGI---------NFVPLNLGPATHILFADGRRVIGRNTFELPHWKGY 167

Query: 349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK 408
                    +        S     +    +  SS V         T  DG  Q+   ++ 
Sbjct: 168 RG-----GTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLD 222

Query: 409 SPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQV 454
                      D      +  G RI F +   +Y+ N D     ++
Sbjct: 223 GKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKI 268

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 58.2 bits (139), Expect = 8e-10
 Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 14/141 (9%)

Query: 496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK---NLYIMDAEGGEGYGL-- 550
           D+    + R++ +N          PDG+ I  R  R       +LY  + E GE   +  
Sbjct: 27  DLKS-GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY 85

Query: 551 --HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG 608
              + T       +  + PDG  I   +D   P S    +Y +  +G     L       
Sbjct: 86  FSGKSTGRRMFTDVAGFDPDGNLIIS-TDAMQPFSSMTCLYRVENDGINFVPLNLGP--- 141

Query: 609 RANHPYFSPDGKSIVFTSDYG 629
                    DG+ ++  + + 
Sbjct: 142 --ATHILFADGRRVIGRNTFE 160

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 52.1 bits (123), Expect = 8e-08
 Identities = 28/251 (11%), Positives = 64/251 (25%), Gaps = 19/251 (7%)

Query: 304 LVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELT 363
               +S S +++             P   K      R  + +   +  ++    +   +T
Sbjct: 25  EHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT 84

Query: 364 RF----VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRF 419
            F       +         PD + +         +      ++  + I            
Sbjct: 85  YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN-----FVPLNL 139

Query: 420 DGSFPSFSPKGDRIAFVEFPG----VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTS 475
             +       G R+                             AF  + D          
Sbjct: 140 GPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVI 199

Query: 476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYK 535
            G      +       I   D+DG   +R+ T +  +     ++ DG+ I+F    +   
Sbjct: 200 VGHRIYFITDIDGFGQIYSTDLDG-KDLRKHT-SFTDYYPRHLNTDGRRILFSKGGS--- 254

Query: 536 NLYIMDAEGGE 546
            +YI + +  +
Sbjct: 255 -IYIFNPDTEK 264

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.3 bits (108), Expect = 6e-06
 Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 23/116 (19%)

Query: 565 WSPD--GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI 622
            +PD  G+ I F    D        ++         RK+    + G  N+  F PDG+ I
Sbjct: 6   LNPDIHGDRIIFVCCDD--------LWEHDLKSGSTRKI--VSNLGVINNARFFPDGRKI 55

Query: 623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRFI 678
                 G                 +++    +  ++KR+T  S +           
Sbjct: 56  AIRVMRGS-----------SLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVA 100

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.8 bits (109), Expect = 5e-06
 Identities = 34/354 (9%), Positives = 72/354 (20%), Gaps = 27/354 (7%)

Query: 193 TSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIY 252
            S    +  ++      ++    +           K   +       +            
Sbjct: 21  VSRGQAFIQDVSGTYVLKVP-EPLRIRYVRRGGDTKVAFIHGTREGDF------------ 67

Query: 253 IFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSI 312
           + +    T + +  E      +              +D   +  V L        E    
Sbjct: 68  LGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE 127

Query: 313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHH 372
             +T   +   +   + G              +    ++                     
Sbjct: 128 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFD 187

Query: 373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDR 432
                  DS  + Y   R      D         + S    I L     +     P+   
Sbjct: 188 ------ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMT 241

Query: 433 IAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI 492
               E+    +                   +   +         G   A      +   +
Sbjct: 242 SEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL-IYSVPVHGEFAAYYQGAPEKGVL 300

Query: 493 NVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE 546
              DV      R++T    N     +S D K ++ R        +Y    E  E
Sbjct: 301 LKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRKDD---GKIYTFPLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 9/66 (13%)

Query: 516 PSVSP-DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAF 574
              SP DG  I F          +I D  G     + ++ E            D +    
Sbjct: 8   EDFSPLDGDLIAF----VSRGQAFIQDVSGTY---VLKVPEPLR-IRYVRRGGDTKVAFI 59

Query: 575 ASDRDN 580
              R+ 
Sbjct: 60  HGTREG 65

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.9 bits (104), Expect = 2e-05
 Identities = 19/152 (12%), Positives = 35/152 (23%), Gaps = 27/152 (17%)

Query: 559 SDTMCNWSP-DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP 617
           S    ++SP DG+ IAF S            ++   +GT + K+       R  +     
Sbjct: 4   SKFAEDFSPLDGDLIAFVSRGQ--------AFIQDVSGTYVLKV---PEPLRIRYVRRGG 52

Query: 618 DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF 677
           D K         G                 +          ++  +N             
Sbjct: 53  DTKVAFIHGTREG---------------DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNG 97

Query: 678 IRPVDVEEVKNEQCAFEDCHWLNETPNQRDWG 709
              V   +         +          R+  
Sbjct: 98  KFAVVANDRFEIMTVDLETGKPTVIERSREAM 129

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.9 bits (99), Expect = 8e-05
 Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 6/80 (7%)

Query: 492 INVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH 551
             + DV G   ++          +     D K      TR G   L I D   G+     
Sbjct: 26  AFIQDVSGTYVLK--VPEPLRIRYVRRGGDTKVAFIHGTREG-DFLGIYDYRTGK---AE 79

Query: 552 RLTEGPWSDTMCNWSPDGEW 571
           +  E   +        +G++
Sbjct: 80  KFEENLGNVFAMGVDRNGKF 99

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 465

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 25/191 (13%), Positives = 57/191 (29%), Gaps = 16/191 (8%)

Query: 451 RRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG 510
           +++V  ++ FS  +        + S   EF     +  +   NV+       +       
Sbjct: 2   KKKVTVEDLFSEDFKIHDPEAKWISDT-EFIYREQKGTVRLWNVETNTSTVLIEGKKIES 60

Query: 511 KNNAFPSVSPDGKWIVFRS------TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN 564
                  +SPD ++ +F          +      +     G+   L              
Sbjct: 61  LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAG 120

Query: 565 WSPDGEWIAFASDRD---NPGSGSFEMYLIHPNGTGLRK------LIQSGSAGRANHPYF 615
           W P G+ + F  + +       G   + ++     G+        L +          ++
Sbjct: 121 WGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW 180

Query: 616 SPDGKSIVFTS 626
           SPDG  + + +
Sbjct: 181 SPDGTRLAYAA 191

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 28/320 (8%), Positives = 74/320 (23%), Gaps = 20/320 (6%)

Query: 325 PATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRV 384
            A +P + + + V      ++     + D    +   +         +    ++ D S +
Sbjct: 7   EAPAP-DARRVYVNDPAHFAAVTQQFVIDGEAGR--VIGMIDGGFLPNP--VVADDGSFI 61

Query: 385 ---GYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGV 441
                   R          ++       P  DI L           P    +       +
Sbjct: 62  AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLL 121

Query: 442 YVVNSDGSNRRQVYFKNAFSTVWDPVRE-AVVYTSGGPEFASESSEVDIISINVDDVDGV 500
           +   S       V  +         V +   ++ +    F     +  +  +        
Sbjct: 122 FYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 181

Query: 501 SAVRRLTTNGKNNAF---PSVSPDGKWIVFRS-------TRTGYKNLYIMDAEGGEGYGL 550
                   + ++      P+ S     +V+ +             +   + A        
Sbjct: 182 EITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE 241

Query: 551 HRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG-R 609
                 P       +    + I    D+ +          +        + +     G  
Sbjct: 242 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE 301

Query: 610 ANHPYFSPDGKSIVFTSDYG 629
            +    S D K +++    G
Sbjct: 302 IDSINVSQDEKPLLYALSTG 321

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 39/324 (12%), Positives = 81/324 (25%), Gaps = 31/324 (9%)

Query: 316 TPPGLHAFTPATSPGNNKFIAVATRRPTSSYR-----HIELFDLVKNKFIELTRFVSPKT 370
              G     P  +  +  FIA A+   +   R     ++E+FD V               
Sbjct: 43  MIDGGFLPNPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR 101

Query: 371 HHLNPF-----ISPDSSRVGYHKCRGGST--REDGNNQLLLENIKSPLPDISLFRFDGSF 423
             +  +     ++PD   + +++          D   +     +  P           +F
Sbjct: 102 FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTF 161

Query: 424 PSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASE 483
                 G               +                 +      +V+ +   +    
Sbjct: 162 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQI 221

Query: 484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRS-------TRTGYKN 536
                             A R            +       I            +T  + 
Sbjct: 222 DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF 281

Query: 537 LYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP-NG 595
           + ++DA+ GE      +     S    N S D + + +A       +G   +Y+    +G
Sbjct: 282 VVVLDAKTGERLAKFEMGHEIDS---INVSQDEKPLLYAL-----STGDKTLYIHDAESG 333

Query: 596 TGLRKLIQSGSAGRANHPYFSPDG 619
             LR + Q G   +      +  G
Sbjct: 334 EELRSVNQLGHGPQV--ITTADMG 355

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.8 bits (89), Expect = 0.002
 Identities = 21/276 (7%), Positives = 56/276 (20%), Gaps = 22/276 (7%)

Query: 366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPS 425
                       S   +R    K        D    L + +I+ P               
Sbjct: 72  AGHSGSDFA-LASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG 130

Query: 426 FSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESS 485
                  + F  F                    +   +        ++          S 
Sbjct: 131 NCASSACLLFFLFGSSAAAGLSVP-------GASDDQLTKSASCFHIHPGAAATHYLGSC 183

Query: 486 EVDIISINVDDVDG-VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG 544
              + + ++         V    T  +N +  +   +   ++  +      ++   D   
Sbjct: 184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV---ASSILQGDIPA 240

Query: 545 GEGYGLHRLTEGPWSDTMCNWSPDGEW----------IAFASDRDNPGSGSFEMYLIHPN 594
                   +          N+   G            I   +   +    +         
Sbjct: 241 AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT 300

Query: 595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGG 630
            +  +      +   ++    + DG S  + +  G 
Sbjct: 301 ASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGT 336

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 29/378 (7%), Positives = 72/378 (19%), Gaps = 76/378 (20%)

Query: 196 AAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVAS-YGNKGWDGEVEMLSTDIYIF 254
              + +    G+T   +             SG   A+AS    +   G+           
Sbjct: 46  TENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGK----------- 93

Query: 255 LTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQR 314
             R     V            D  T                        +   ++     
Sbjct: 94  --RTDYVEV-----------FDPVTFLPIAD------------------IELPDAPRFSV 122

Query: 315 VTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLN 374
                +          ++  +       +++        +                    
Sbjct: 123 GPRVHIIGNCA-----SSACLLFFLFGSSAAA----GLSVPGAS------DDQLTKSASC 167

Query: 375 PFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIA 434
             I P ++   Y      S                          + S  +       + 
Sbjct: 168 FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC--TGAQNCSSQAAQANYPGML 225

Query: 435 FVEFPG-VYVVNSDGSNRRQVYFKNAFSTVWDPV-------REAVVYTSGGPEFAS---- 482
                  +   +   +        +   +            +      +           
Sbjct: 226 VWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH 285

Query: 483 -ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD 541
             S      + +            ++  G ++     + DG    + ++    + L I D
Sbjct: 286 SRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGT-EVLDIYD 343

Query: 542 AEGGEGYGLHRLTEGPWS 559
           A   +      L +GP S
Sbjct: 344 AASDQDQSSVELDKGPES 361

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 23/186 (12%), Positives = 57/186 (30%), Gaps = 18/186 (9%)

Query: 450 NRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN 509
           +R+     +     +     ++ + S       + + + + +    +             
Sbjct: 1   SRKTYTLTDYLKNTYRLKLYSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEF 60

Query: 510 GKNNAFPSVSPDGKWIVFRS------TRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC 563
           G +    S+SPDG++I+           +   +  I D    +   L      P +    
Sbjct: 61  GHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ---LITEERIPNNTQWV 117

Query: 564 NWSPDGEWIAFASD-----RDNPGSGSFEMYLIHPNGTGL----RKLIQSGSAGRANHPY 614
            WSP G  +A+  +     +  P   S+ +                + +       +  +
Sbjct: 118 TWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW 177

Query: 615 FSPDGK 620
           +SP+G 
Sbjct: 178 WSPNGT 183

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	721
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.87
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.86
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.86
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.84
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.84
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.82
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.81
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.8
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.8
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.79
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.78
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.77
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.76
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.75
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.75
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.75
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.74
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.74
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.73
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.73
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.73
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.72
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.71
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.71
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.7
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.69
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.69
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.68
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.67
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.67
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.66
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.65
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.64
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.64
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.63
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.62
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.58
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.57
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.57
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.56
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.55
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.54
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.51
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.47
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.47
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.34
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.31
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.31
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.28
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.28
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.2
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.18
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.17
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.13
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.1
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	98.98
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.88
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.86
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.85
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.85
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.84
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	98.83
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.79
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.73
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.68
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.66
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.63
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.59
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.58
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.44
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.02
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	97.95
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.95
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.88
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.5
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.07
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	96.93
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.53
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.41
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.46
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.96
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.84
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.46
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.35
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.31
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.15
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.52
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	91.68
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	88.98
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.39
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	85.46
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	84.14
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	83.5

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.5e-22  Score=199.81  Aligned_cols=259  Identities=19%  Similarity=0.311  Sum_probs=200.1

Q ss_pred             CEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEe-
Q 004971          382 SRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY-  455 (721)
Q Consensus       382 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~-  455 (721)
                      .+|+|+.......   ...+||+.+.++... .++........++|||||++|||+.    ...+++++..++..+++. 
T Consensus         4 ~~iay~~~~~~~~---~~~~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~   80 (269)
T d2hqsa1           4 TRIAYVVQTNGGQ---FPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS   80 (269)
T ss_dssp             CEEEEEEECSSSS---CCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC
T ss_pred             CeEEEEEEeCCCC---ceEEEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEee
Confidence            6788877665421   113689998876533 3333333445789999999999983    456999999999887777 


Q ss_pred             -ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCc
Q 004971          456 -FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY  534 (721)
Q Consensus       456 -~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~  534 (721)
                       .+....+.|||||+.+++...      ..+...++.......    ..............+.++++++.+++.+.+.+.
T Consensus        81 ~~~~~~~~~~spdg~~i~~~~~------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  150 (269)
T d2hqsa1          81 FPRHNGAPAFSPDGSKLAFALS------KTGSLNLYVMDLASG----QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGR  150 (269)
T ss_dssp             CSSCEEEEEECTTSSEEEEEEC------TTSSCEEEEEETTTC----CEEECCCCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             eecccccceecCCCCeeeEeee------cCCccceeecccccc----cceeeeeccccccccccccccccceecccccCC
Confidence             566778999999999999874      344555665555443    444555555556678999999999999988888


Q ss_pred             eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeE
Q 004971          535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY  614 (721)
Q Consensus       535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~  614 (721)
                      ..|++.+++++.   ...+.........+.|||||++|++...+.    +...|++++..++..+.+.   ..+....+.
T Consensus       151 ~~i~~~~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~---~~~~~~~p~  220 (269)
T d2hqsa1         151 PQVYKVNINGGA---PQRITWEGSQNQDADVSSDGKFMVMVSSNG----GQQHIAKQDLATGGVQVLS---STFLDETPS  220 (269)
T ss_dssp             CEEEEEETTSSC---CEECCCSSSEEEEEEECTTSSEEEEEEECS----SCEEEEEEETTTCCEEECC---CSSSCEEEE
T ss_pred             ceEeeeeccccc---ceeeecccccccccccccccceeEEEeecC----CceeeeEeecccccceEee---cCccccceE
Confidence            899999999887   566766666667899999999999999874    7789999998887654443   345567899


Q ss_pred             ECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCCCCceecCCc
Q 004971          615 FSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFEDGTPAWGPRF  677 (721)
Q Consensus       615 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~sp~~  677 (721)
                      |||||++|+|.+.+.+.              .+||+++++|+..++|+...+.+..|+|||.+
T Consensus       221 ~SPDG~~i~f~s~~~~~--------------~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP~~  269 (269)
T d2hqsa1         221 LAPNGTMVIYSSSQGMG--------------SVLNLVSTDGRFKARLPATDGQVKFPAWSPYL  269 (269)
T ss_dssp             ECTTSSEEEEEEEETTE--------------EEEEEEETTSCCEEECCCSSSEEEEEEECCCC
T ss_pred             ECCCCCEEEEEEcCCCC--------------cEEEEEECCCCCEEEEeCCCCcEEeEEeCCCC
Confidence            99999999999887653              37999999999999999987777889999963

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=1.2e-22  Score=210.66  Aligned_cols=330  Identities=15%  Similarity=0.068  Sum_probs=208.7

Q ss_pred             cccccCC-CCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCC--cceeccCCeEEEEeccCCCCcEEEE
Q 004971          219 FSPAVSP-SGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGG--WPCWVDESTLFFHRKSEEDDWISVY  295 (721)
Q Consensus       219 ~~p~~SP-DG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~  295 (721)
                      +.+.||| ||+++|+++             .++||+|++.+|+.+++. +...  .++|+|||+.++....+.+..+.+|
T Consensus         6 ~~~~fSP~dG~~~a~~~-------------~g~v~v~d~~~~~~~~~~-~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~   71 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-------------RGQAFIQDVSGTYVLKVP-EPLRIRYVRRGGDTKVAFIHGTREGDFLGIY   71 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-------------TTEEEEECTTSSBEEECS-CCSCEEEEEECSSSEEEEEEEETTEEEEEEE
T ss_pred             hcccccCCCCCEEEEEE-------------CCeEEEEECCCCcEEEcc-CCCCEEEEEECCCCCEEEEEEcCCCCEEEEE
Confidence            3457999 999999975             357999999999888763 2222  5699999985443222212233444


Q ss_pred             EEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCc
Q 004971          296 KVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNP  375 (721)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~  375 (721)
                         ...++       +..++..+...+..++||| ||++|++...     +..+++|++.+++...+.  ..+......+
T Consensus        72 ---d~~~~-------~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  133 (360)
T d1k32a3          72 ---DYRTG-------KAEKFEENLGNVFAMGVDR-NGKFAVVAND-----RFEIMTVDLETGKPTVIE--RSREAMITDF  133 (360)
T ss_dssp             ---ETTTC-------CEEECCCCCCSEEEEEECT-TSSEEEEEET-----TSEEEEEETTTCCEEEEE--ECSSSCCCCE
T ss_pred             ---ECCCC-------cEEEeeCCCceEEeeeecc-cccccceecc-----ccccccccccccceeeee--ecccccccch
Confidence               33333       6777777777788899999 9999998643     345999999998865554  3345667789


Q ss_pred             EEcCCCCEEEEEEeeCCCCC-CCCcceeEEEeccCCCC-cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCce-
Q 004971          376 FISPDSSRVGYHKCRGGSTR-EDGNNQLLLENIKSPLP-DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNR-  451 (721)
Q Consensus       376 ~~Spdg~~l~~~~~~~~~~~-~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~-  451 (721)
                      +|+|||++|++......... ......++++++.++.. .+.........+.|+|||++|++.+ +..+.+|+...... 
T Consensus       134 ~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~  213 (360)
T d1k32a3         134 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS  213 (360)
T ss_dssp             EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEE
T ss_pred             hhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEccccccccee
Confidence            99999999999876665331 11123466677665421 1111222233468999999999985 55666776543321 


Q ss_pred             -------EEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCC
Q 004971          452 -------RQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG  522 (721)
Q Consensus       452 -------~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg  522 (721)
                             ..+.  ......+.|+++++.++....    ........++.++...+    ....+.........+.+.+++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  285 (360)
T d1k32a3         214 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY----DLNDMYKRSSPINVDPG----DYRMIIPLESSILIYSVPVHG  285 (360)
T ss_dssp             CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCC----CCTTGGGGCEECSCCCB----CEEEEEECSSEEEEEECCCCC
T ss_pred             eccccceEEEecccCccccceECCCcCcccccce----eecccccceeecccCcC----ceeEeeecCCCceEEEEEecC
Confidence                   1121  234455678888877654321    01122233555544332    344444433333333444443


Q ss_pred             CEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEe
Q 004971          523 KWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKL  601 (721)
Q Consensus       523 ~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l  601 (721)
                      ....+......+..|++||+.+++   ...+..   .+..++|||||++|++...++       .|++||+++++..+.
T Consensus       286 ~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~---~v~~~~~SpDG~~l~~~~~Dg-------~i~v~d~~~~~~~~~  351 (360)
T d1k32a3         286 EFAAYYQGAPEKGVLLKYDVKTRK---VTEVKN---NLTDLRLSADRKTVMVRKDDG-------KIYTFPLEKPEDERT  351 (360)
T ss_dssp             SHHHHHHCCCCCEEEEEEETTTCC---EEEEEE---EEEEEEECTTSCEEEEEETTS-------CEEEEESSCTTSCEE
T ss_pred             CCeeEEEecCCCCEEEEEECCCCe---EEEecC---CcCEEEECCCCCEEEEEECCC-------eEEEEECCCCCcceE
Confidence            322222222336789999999887   444443   357899999999999999875       899999988876554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.4e-20  Score=187.01  Aligned_cols=256  Identities=22%  Similarity=0.378  Sum_probs=190.5

Q ss_pred             CEEEEEEecCCCC-eeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC
Q 004971          333 KFIAVATRRPTSS-YRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL  411 (721)
Q Consensus       333 ~~la~~~~~~g~~-~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  411 (721)
                      .+|||.....+.. ...|+++|.+....+.+...   ...+..|+|||||++|+|.......      ..++..+..+..
T Consensus         4 ~~iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~---~~~~~sP~wSPDGk~IAf~~~~~~~------~~~~~~~~~~~~   74 (269)
T d2hqsa1           4 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRS---PQPLMSPAWSPDGSKLAYVTFESGR------SALVIQTLANGA   74 (269)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEE---SSCEEEEEECTTSSEEEEEECTTSS------CEEEEEETTTCC
T ss_pred             CeEEEEEEeCCCCceEEEEEEcCCCCCcEEEecC---CCceeeeEECCCCCEEEEEEeeccC------cceeeeecccCc
Confidence            4788887765433 34699999988777777644   4456789999999999998765542      456777765553


Q ss_pred             C-cceecccCCCCceeCcCCCEEEEEe----CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCC
Q 004971          412 P-DISLFRFDGSFPSFSPKGDRIAFVE----FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASES  484 (721)
Q Consensus       412 ~-~~~~~~~~~~~~~~SpDG~~la~~~----~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~  484 (721)
                      . .++........+.|||||+++++..    ...+..+...........  ......+.++++++.+++...      ..
T Consensus        75 ~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  148 (269)
T d2hqsa1          75 VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD------QA  148 (269)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEEC------TT
T ss_pred             eeEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceeccc------cc
Confidence            2 3333333345578999999999983    234444544444444443  344557889999999999873      45


Q ss_pred             CcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeE
Q 004971          485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN  564 (721)
Q Consensus       485 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~  564 (721)
                      +...|+..+.+..    ....++........+.|||||+++++.+.+.+...|++++..++.   . +++........+.
T Consensus       149 g~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~---~-~~~~~~~~~~~p~  220 (269)
T d2hqsa1         149 GRPQVYKVNINGG----APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---V-QVLSSTFLDETPS  220 (269)
T ss_dssp             SSCEEEEEETTSS----CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC---E-EECCCSSSCEEEE
T ss_pred             CCceEeeeecccc----cceeeecccccccccccccccceeEEEeecCCceeeeEeeccccc---c-eEeecCccccceE
Confidence            6778888888775    666676666667789999999999999998888899999998776   3 3444445567899


Q ss_pred             EccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECC
Q 004971          565 WSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSP  617 (721)
Q Consensus       565 ~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~Sp  617 (721)
                      |||||++|+|.+...    +...||+++++++..++|+.  ..+.+..|+|||
T Consensus       221 ~SPDG~~i~f~s~~~----~~~~l~~~~~dg~~~~~lt~--~~g~~~~p~WSP  267 (269)
T d2hqsa1         221 LAPNGTMVIYSSSQG----MGSVLNLVSTDGRFKARLPA--TDGQVKFPAWSP  267 (269)
T ss_dssp             ECTTSSEEEEEEEET----TEEEEEEEETTSCCEEECCC--SSSEEEEEEECC
T ss_pred             ECCCCCEEEEEEcCC----CCcEEEEEECCCCCEEEEeC--CCCcEEeEEeCC
Confidence            999999999999874    67899999999999888876  456677899998

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=7.7e-22  Score=204.37  Aligned_cols=320  Identities=14%  Similarity=0.099  Sum_probs=204.4

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeee
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTD  250 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~  250 (721)
                      || -||++++|++..           +||.++++++..+++ .+......++|||||++|++++.+++          ..
T Consensus        11 SP-~dG~~~a~~~~g-----------~v~v~d~~~~~~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g----------~~   67 (360)
T d1k32a3          11 SP-LDGDLIAFVSRG-----------QAFIQDVSGTYVLKV-PEPLRIRYVRRGGDTKVAFIHGTREG----------DF   67 (360)
T ss_dssp             EE-CGGGCEEEEETT-----------EEEEECTTSSBEEEC-SCCSCEEEEEECSSSEEEEEEEETTE----------EE
T ss_pred             cC-CCCCEEEEEECC-----------eEEEEECCCCcEEEc-cCCCCEEEEEECCCCCEEEEEEcCCC----------CE
Confidence            76 259999998654           899999999999998 56667777899999999999876654          57


Q ss_pred             EEEEEcCCCceeEEEeccCC--cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceee
Q 004971          251 IYIFLTRDGTQRVKIVENGG--WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATS  328 (721)
Q Consensus       251 i~~~d~~~g~~~~l~~~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  328 (721)
                      |++|+..+++.+++..+...  ..+|+|||+.++..  ..++.+.+|.+  ..+.       ....+..+......++|+
T Consensus        68 v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~s  136 (360)
T d1k32a3          68 LGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVA--NDRFEIMTVDL--ETGK-------PTVIERSREAMITDFTIS  136 (360)
T ss_dssp             EEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEE--ETTSEEEEEET--TTCC-------EEEEEECSSSCCCCEEEC
T ss_pred             EEEEECCCCcEEEeeCCCceEEeeeeccccccccee--ccccccccccc--cccc-------eeeeeecccccccchhhc
Confidence            99999999998887655554  45899999865532  22556666633  2221       233344445566789999


Q ss_pred             cCCCCEEEEEEecC-----CCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeE
Q 004971          329 PGNNKFIAVATRRP-----TSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLL  403 (721)
Q Consensus       329 p~dG~~la~~~~~~-----g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~  403 (721)
                      | ||++|++.....     +.....+++||+.+++...+..   +......++|+|||++|++.+.+.....+...... 
T Consensus       137 p-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~---~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~-  211 (360)
T d1k32a3         137 D-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT---ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN-  211 (360)
T ss_dssp             T-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC---SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC-
T ss_pred             c-ceeeeeeeccccccceeeccccceeeeccccCceeeecc---cccccccccccCCCCEEEEEeCCCceEcccccccc-
Confidence            9 999999876543     3456678999999987655543   24556678999999999998766553211000000 


Q ss_pred             EEeccCCCCcc---eecccCCCCceeCcCCCEEEEEe------CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEE
Q 004971          404 LENIKSPLPDI---SLFRFDGSFPSFSPKGDRIAFVE------FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVV  472 (721)
Q Consensus       404 ~~~~~~~~~~~---~~~~~~~~~~~~SpDG~~la~~~------~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la  472 (721)
                       .... ....+   .........+.|+++++.++...      ...++.++..++....+.  .+....+.+.+++....
T Consensus       212 -~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (360)
T d1k32a3         212 -FSFE-VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA  289 (360)
T ss_dssp             -EECC-SCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred             -eeec-cccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCee
Confidence             0000 00011   11111223457888887655431      234677777776665555  22333344444443222


Q ss_pred             EEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc
Q 004971          473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG  547 (721)
Q Consensus       473 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~  547 (721)
                      +..      .......|+.++..+.    +...+..   .+..++|||||++|++.+.   +..|++||+++++.
T Consensus       290 ~~~------~~~~~~~i~~~d~~~~----~~~~~~~---~v~~~~~SpDG~~l~~~~~---Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         290 YYQ------GAPEKGVLLKYDVKTR----KVTEVKN---NLTDLRLSADRKTVMVRKD---DGKIYTFPLEKPED  348 (360)
T ss_dssp             HHH------CCCCCEEEEEEETTTC----CEEEEEE---EEEEEEECTTSCEEEEEET---TSCEEEEESSCTTS
T ss_pred             EEE------ecCCCCEEEEEECCCC----eEEEecC---CcCEEEECCCCCEEEEEEC---CCeEEEEECCCCCc
Confidence            211      1223334444455443    4444433   4667899999999999887   78999999998874

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.5e-20  Score=189.16  Aligned_cols=269  Identities=10%  Similarity=0.014  Sum_probs=196.4

Q ss_pred             CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEE---eecccCCCCcccCcEEcCCCCEEEEEEeeCCC
Q 004971          317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIE---LTRFVSPKTHHLNPFISPDSSRVGYHKCRGGS  393 (721)
Q Consensus       317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~---l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~  393 (721)
                      .|...+..++||| +|++|+...      ++.|.+||+.+++...   ......+...+..++|+|||+.|+....++. 
T Consensus        49 ~H~~~V~~v~fs~-~g~~latg~------dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~-  120 (337)
T d1gxra_          49 NHGEVVCAVTISN-PTRHVYTGG------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST-  120 (337)
T ss_dssp             CCSSCCCEEEECS-SSSEEEEEC------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE-
T ss_pred             CCCCcEEEEEECC-CCCEEEEEE------CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc-
Confidence            5666778899999 999998732      3459999998764221   1222345566888999999999988765544 


Q ss_pred             CCCCCcceeEEEeccCCCCccee----cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEc
Q 004971          394 TREDGNNQLLLENIKSPLPDISL----FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWD  465 (721)
Q Consensus       394 ~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~s  465 (721)
                              +.++++......+..    .........|+|++..++... +..+.+|++.+++.....   ...+..++|+
T Consensus       121 --------i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s  192 (337)
T d1gxra_         121 --------LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS  192 (337)
T ss_dssp             --------EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             --------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                    555565443222111    111223467999999988875 678999999988765544   4567789999


Q ss_pred             CCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCC
Q 004971          466 PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGG  545 (721)
Q Consensus       466 pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g  545 (721)
                      ++++.+++.+       .++.+.+|++....     .... ..+...+..++|+|++++|+..+.   +..|++||+.++
T Consensus       193 ~~~~~~~~~~-------~d~~v~i~d~~~~~-----~~~~-~~~~~~i~~l~~~~~~~~l~~~~~---d~~i~i~d~~~~  256 (337)
T d1gxra_         193 NDGTKLWTGG-------LDNTVRSWDLREGR-----QLQQ-HDFTSQIFSLGYCPTGEWLAVGME---SSNVEVLHVNKP  256 (337)
T ss_dssp             TTSSEEEEEE-------TTSEEEEEETTTTE-----EEEE-EECSSCEEEEEECTTSSEEEEEET---TSCEEEEETTSS
T ss_pred             cccccccccc-------ccccccccccccce-----eecc-cccccceEEEEEcccccccceecc---cccccccccccc
Confidence            9999999886       46778888764321     2222 234456778899999999998876   778999999988


Q ss_pred             cccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEE
Q 004971          546 EGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFT  625 (721)
Q Consensus       546 ~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~  625 (721)
                      +   ......+...+..++|+|||++|+.++.++       .|++||+.+++......  +...+..++|||||++|+..
T Consensus       257 ~---~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg-------~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~t~  324 (337)
T d1gxra_         257 D---KYQLHLHESCVLSLKFAYCGKWFVSTGKDN-------LLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVTG  324 (337)
T ss_dssp             C---EEEECCCSSCEEEEEECTTSSEEEEEETTS-------EEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEE
T ss_pred             c---cccccccccccceEEECCCCCEEEEEeCCC-------eEEEEECCCCCEEEEcc--CCCCEEEEEEeCCCCEEEEE
Confidence            7   445555666678999999999999888775       89999999887665544  56778899999999999887


Q ss_pred             EecC
Q 004971          626 SDYG  629 (721)
Q Consensus       626 ~~~~  629 (721)
                      +.++
T Consensus       325 s~D~  328 (337)
T d1gxra_         325 SGDK  328 (337)
T ss_dssp             ETTS
T ss_pred             eCCC
Confidence            7655

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.86  E-value=4.1e-19  Score=191.60  Aligned_cols=368  Identities=13%  Similarity=0.085  Sum_probs=216.4

Q ss_pred             eEEEEeCCCcceEeecCC------CCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCC
Q 004971          197 AVYSTELKTGLTRRLTPY------GVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGG  270 (721)
Q Consensus       197 ~l~~v~~~~g~~~~lt~~------~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~  270 (721)
                      .++.+++.+++.+.+...      ......+.|||||++|+|+......|+.   ....++|++++++++..++      
T Consensus        37 ~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~---s~~~~~~l~d~~~~~~~~l------  107 (470)
T d2bgra1          37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRH---SYTASYDIYDLNKRQLITE------  107 (470)
T ss_dssp             CEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSS---CEEEEEEEEETTTTEECCS------
T ss_pred             cEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeee---ccCceEEEEECCCCccccc------
Confidence            689999999988765332      2234566899999999997643322221   2345677777766553322      


Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                                                                   +.+...+..+.||| ||++|||....      .|+
T Consensus       108 ---------------------------------------------~~~~~~~~~~~~SP-DG~~ia~~~~~------~l~  135 (470)
T d2bgra1         108 ---------------------------------------------ERIPNNTQWVTWSP-VGHKLAYVWNN------DIY  135 (470)
T ss_dssp             ---------------------------------------------SCCCTTEEEEEECS-STTCEEEEETT------EEE
T ss_pred             ---------------------------------------------ccCCcccccccccc-CcceeeEeecc------cce
Confidence                                                         12222334566777 77777775422      377


Q ss_pred             EEECCCCceEEeecccC----------------CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC-Cc
Q 004971          351 LFDLVKNKFIELTRFVS----------------PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL-PD  413 (721)
Q Consensus       351 l~dl~tg~~~~l~~~~~----------------~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~  413 (721)
                      ++++.+++..++.....                .......+.|||||++|++...+....     ..+.+....... ..
T Consensus       136 ~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v-----~~~~~~~~~~~~~~~  210 (470)
T d2bgra1         136 VKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEV-----PLIEYSFYSDESLQY  210 (470)
T ss_dssp             EESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTC-----CEEEEEECCSTTCSS
T ss_pred             EEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcC-----ceEEEEeeccCCCCC
Confidence            77777776555432111                012234577999999999988766521     111121111110 00


Q ss_pred             ceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe--------------ecCceeeEEcCCCCeEEEEecCCC
Q 004971          414 ISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY--------------FKNAFSTVWDPVREAVVYTSGGPE  479 (721)
Q Consensus       414 ~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~--------------~~~~~~~~~spdg~~la~~~~~~~  479 (721)
                      .....     ..+...|...   ....++++++.++....+.              ...+..+.|+++++.+++...+. 
T Consensus       211 ~~~~~-----~~~~~~g~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~-  281 (470)
T d2bgra1         211 PKTVR-----VPYPKAGAVN---PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRI-  281 (470)
T ss_dssp             CEEEE-----EECCBTTSCC---CEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESS-
T ss_pred             Ceeee-----eccccccccC---CcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeecc-
Confidence            00000     0000011100   1224778887766532111              12345788999998777665321 


Q ss_pred             CCCCCCcEEEEEEEccCCCCccceEEccc--------CC----CCCcceEEccCCCE-EEEEEeeCCceeEEEEECCCCc
Q 004971          480 FASESSEVDIISINVDDVDGVSAVRRLTT--------NG----KNNAFPSVSPDGKW-IVFRSTRTGYKNLYIMDAEGGE  546 (721)
Q Consensus       480 ~~~~~~~~~i~~~~~~~~~~~~~~~~l~~--------~~----~~~~~~~~SpDg~~-l~~~s~~~g~~~l~~~d~~~g~  546 (721)
                        .+.....++.++..++    ....+..        ..    .....+.|+++++. +++.+.+++..+||+++.+++.
T Consensus       282 --~~~~~~~~~~~d~~tg----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~  355 (470)
T d2bgra1         282 --QNYSVMDICDYDESSG----RWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD  355 (470)
T ss_dssp             --TTEEEEEEEEEETTTT----EEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSC
T ss_pred             --CCceEEEEEEecCCCC----cEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCc
Confidence              1223456677766553    3333321        00    12345788887765 5667888888999999998877


Q ss_pred             ccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc-eEEeeec--CCCCCcCCeEECCCCCEEE
Q 004971          547 GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG-LRKLIQS--GSAGRANHPYFSPDGKSIV  623 (721)
Q Consensus       547 ~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~-~~~l~~~--~~~~~~~~~~~SpDG~~l~  623 (721)
                         ...++.+.+.+..+ +++|++.|+|.+.........++||.++++++. .+.|+..  .+...+..++|||||++++
T Consensus       356 ---~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~  431 (470)
T d2bgra1         356 ---CTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQ  431 (470)
T ss_dssp             ---CEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEE
T ss_pred             ---eeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEE
Confidence               78888887766654 778889999887542111245689999998765 4444421  2445667899999999988


Q ss_pred             EEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC-eEEecc
Q 004971          624 FTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD-LKRLTQ  663 (721)
Q Consensus       624 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~lt~  663 (721)
                      ........|              -+.+++..+++ ++.|+.
T Consensus       432 ~~~s~~~~P--------------~~~l~~~~~g~~v~~le~  458 (470)
T d2bgra1         432 LRCSGPGLP--------------LYTLHSSVNDKGLRVLED  458 (470)
T ss_dssp             EEECSBSSC--------------EEEEEETTTTEEEEEEEC
T ss_pred             EEecCCCCC--------------eEEEEECCCCCEEEEEec
Confidence            776655432              36677776664 466665

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.5e-19  Score=193.26  Aligned_cols=369  Identities=13%  Similarity=0.147  Sum_probs=215.5

Q ss_pred             eEEEEeCCCcceEeecCCCC----CccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCCcc
Q 004971          197 AVYSTELKTGLTRRLTPYGV----ADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWP  272 (721)
Q Consensus       197 ~l~~v~~~~g~~~~lt~~~~----~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~  272 (721)
                      .|+.+++.+++.+.|.....    ......|||||++|++..+....|+..   ....+|++|+.+++.+++......  
T Consensus        38 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s---~~~~~~i~d~~~~~~~~l~~~~~~--  112 (465)
T d1xfda1          38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS---YTGYYVLSKIPHGDPQSLDPPEVS--  112 (465)
T ss_dssp             CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC---CCSEEEEEESSSCCCEECCCTTCC--
T ss_pred             cEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEee---ccccEEEEEccCCceeeccCccCC--
Confidence            68899998888776533221    223335899999999977655555432   246788888887776655311100  


Q ss_pred             eeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEE
Q 004971          273 CWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELF  352 (721)
Q Consensus       273 ~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~  352 (721)
                                                                    ...+..+.||| ||++|||+...      .|++.
T Consensus       113 ----------------------------------------------~~~l~~~~wSP-DG~~iafv~~~------nl~~~  139 (465)
T d1xfda1         113 ----------------------------------------------NAKLQYAGWGP-KGQQLIFIFEN------NIYYC  139 (465)
T ss_dssp             ----------------------------------------------SCCCSBCCBCS-STTCEEEEETT------EEEEE
T ss_pred             ----------------------------------------------ccccceeeecc-CCceEEEEecc------eEEEE
Confidence                                                          00112344555 55555554321      15555


Q ss_pred             ECCCCceEEeecccCC----------------CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccC-CC-Ccc
Q 004971          353 DLVKNKFIELTRFVSP----------------KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKS-PL-PDI  414 (721)
Q Consensus       353 dl~tg~~~~l~~~~~~----------------~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~-~~~  414 (721)
                      +..+++..+++.....                ......+.|||||++|+|.+.+...      ...+...... .. ..+
T Consensus       140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~------V~~~~~~~~~~~~~p~~  213 (465)
T d1xfda1         140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSR------VPIMELPTYTGSIYPTV  213 (465)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTT------SCEEEECCCSSSSSCCC
T ss_pred             ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccc------cceeeccccccccccee
Confidence            5544443333321100                0111246699999999998876653      2222221111 10 011


Q ss_pred             eecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe--e-------cCceeeEEcCCCCeEEEEecCCCCCCCCC
Q 004971          415 SLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY--F-------KNAFSTVWDPVREAVVYTSGGPEFASESS  485 (721)
Q Consensus       415 ~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~--~-------~~~~~~~~spdg~~la~~~~~~~~~~~~~  485 (721)
                      ....    .+.   -|...   ....|+++|++++......  .       ..+..+.|+||++.+++..++     ...
T Consensus       214 ~~~~----Yp~---~G~~n---p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR-----~q~  278 (465)
T d1xfda1         214 KPYH----YPK---AGSEN---PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR-----AQN  278 (465)
T ss_dssp             EEEE----CCB---TTSCC---CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET-----TSC
T ss_pred             eeee----ccc---cCCCC---CceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEcc-----ccc
Confidence            1110    010   01100   0125888999877643322  1       124568999999876666542     356


Q ss_pred             cEEEEEEEccCCCCccceEEccc-C-CC----CCcceEEccCCCEEEEE--EeeCCceeEEEEECCCC----cccceEEC
Q 004971          486 EVDIISINVDDVDGVSAVRRLTT-N-GK----NNAFPSVSPDGKWIVFR--STRTGYKNLYIMDAEGG----EGYGLHRL  553 (721)
Q Consensus       486 ~~~i~~~~~~~~~~~~~~~~l~~-~-~~----~~~~~~~SpDg~~l~~~--s~~~g~~~l~~~d~~~g----~~~~~~~l  553 (721)
                      ...|+.++..++    ..+.+.. . ..    ....+.|+|||+.++|.  +.+++..++|.+.+..+    ....+++|
T Consensus       279 ~~~i~~~d~~tg----~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~L  354 (465)
T d1xfda1         279 VSILTLCDATTG----VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI  354 (465)
T ss_dssp             EEEEEEEETTTC----CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS
T ss_pred             cceEEEEcCCCC----cEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEe
Confidence            677888887765    4444432 1 11    23568999999988775  45567778888764321    11226788


Q ss_pred             cCCCcCceee-EEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec--CCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          554 TEGPWSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS--GSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       554 ~~~~~~~~~~-~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      +.+.+.+..+ +|+++++.|+|.+....  ....+||.++++++..++++.+  ........+.|||||++++......+
T Consensus       355 T~G~w~V~~i~~~d~~~~~vyF~a~~~~--p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~  432 (465)
T d1xfda1         355 TSGDWDVTKILAYDEKGNKIYFLSTEDL--PRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPG  432 (465)
T ss_dssp             CCSSSCEEEEEEEETTTTEEEEEESSSC--TTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSS
T ss_pred             ccCCceEEEEEEEcCCCCEEEEEEeCCC--CCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCC
Confidence            9888877664 79999999999987543  2567899999988765543322  13345678999999999887665544


Q ss_pred             CcCCCCCCCCCCCCCccEEEEEcCCCC-eEEeccC
Q 004971          631 ISAEPISTPHQYQPYGEIFKIKLDGSD-LKRLTQN  664 (721)
Q Consensus       631 ~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~lt~~  664 (721)
                      .|              .+.+++..+++ +..|+.+
T Consensus       433 ~P--------------~~~~~~~~~~~~~~~Le~N  453 (465)
T d1xfda1         433 VP--------------MVTVHNTTDKKKMFDLETN  453 (465)
T ss_dssp             SC--------------CEEEEETTTCCEEEEEECC
T ss_pred             CC--------------eEEEEECCCCCEEEEEcCC
Confidence            32              36777766554 5577653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.84  E-value=4e-19  Score=180.40  Aligned_cols=275  Identities=16%  Similarity=0.075  Sum_probs=192.9

Q ss_pred             ccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcce
Q 004971          322 AFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQ  401 (721)
Q Consensus       322 ~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~  401 (721)
                      ...++++| +|+.|+|...      ..+.+||+.+++...+.  .+|...+..++|||||++|+....++.         
T Consensus        20 ~~~~a~~~-~g~~l~~~~~------~~v~i~~~~~~~~~~~~--~~H~~~v~~~~~sp~g~~latg~~dg~---------   81 (311)
T d1nr0a1          20 AVVLGNTP-AGDKIQYCNG------TSVYTVPVGSLTDTEIY--TEHSHQTTVAKTSPSGYYCASGDVHGN---------   81 (311)
T ss_dssp             CCCCEECT-TSSEEEEEET------TEEEEEETTCSSCCEEE--CCCSSCEEEEEECTTSSEEEEEETTSE---------
T ss_pred             eEEEEEcC-CCCEEEEEeC------CEEEEEECCCCceeEEE--cCCCCCEEEEEEeCCCCeEeccccCce---------
Confidence            34678999 9999999642      23899999988754443  456778889999999999988766554         


Q ss_pred             eEEEeccCCCCcc----eecccCCCCceeCcCCCEEEEEeC---CcEEEEECCCCceEE-Ee--ecCceeeEEcCCCCeE
Q 004971          402 LLLENIKSPLPDI----SLFRFDGSFPSFSPKGDRIAFVEF---PGVYVVNSDGSNRRQ-VY--FKNAFSTVWDPVREAV  471 (721)
Q Consensus       402 l~~~~~~~~~~~~----~~~~~~~~~~~~SpDG~~la~~~~---~~l~v~d~~~g~~~~-l~--~~~~~~~~~spdg~~l  471 (721)
                      +.++++.......    .........++|+|||++|+.++.   ..+.+|+++.++... +.  ...+..+.|+|+++.+
T Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~  161 (311)
T d1nr0a1          82 VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFR  161 (311)
T ss_dssp             EEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCE
T ss_pred             EeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceee
Confidence            5566665543221    112223455799999999988853   347899998776433 33  4567889999999975


Q ss_pred             EEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE
Q 004971          472 VYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH  551 (721)
Q Consensus       472 a~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~  551 (721)
                      +++.      ..++.+.+|++....     ....+..+...+..+.|+||++.|+..+.   +..|.+||..+++.  ..
T Consensus       162 l~sg------s~d~~i~i~d~~~~~-----~~~~~~~~~~~i~~v~~~p~~~~l~~~~~---d~~v~~~d~~~~~~--~~  225 (311)
T d1nr0a1         162 IISG------SDDNTVAIFEGPPFK-----FKSTFGEHTKFVHSVRYNPDGSLFASTGG---DGTIVLYNGVDGTK--TG  225 (311)
T ss_dssp             EEEE------ETTSCEEEEETTTBE-----EEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTCCE--EE
T ss_pred             eccc------ccccccccccccccc-----cccccccccccccccccCccccccccccc---cccccccccccccc--cc
Confidence            5543      256788888765422     44455555667788999999999998876   77899999988764  33


Q ss_pred             ECc-------CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEE
Q 004971          552 RLT-------EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF  624 (721)
Q Consensus       552 ~l~-------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~  624 (721)
                      .+.       .+...+..++|+|||++|+.++.++       .|++||+.++++.+..............+.+++.+|+.
T Consensus       226 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg-------~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s  298 (311)
T d1nr0a1         226 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-------TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS  298 (311)
T ss_dssp             ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-------EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEE
T ss_pred             cccccccccccccccccccccCCCCCEEEEEeCCC-------eEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEE
Confidence            332       1234577899999999999888764       89999999988765544312222233445556667877


Q ss_pred             EEecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971          625 TSDYGGISAEPISTPHQYQPYGEIFKIKLD  654 (721)
Q Consensus       625 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  654 (721)
                      .+.++                 .|.+||++
T Consensus       299 ~s~dG-----------------~i~~wd~d  311 (311)
T d1nr0a1         299 ISANG-----------------FINFVNPE  311 (311)
T ss_dssp             EETTC-----------------CEEEEETT
T ss_pred             EECCC-----------------EEEEEeCC
Confidence            76554                 48999874

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.1e-18  Score=179.21  Aligned_cols=234  Identities=16%  Similarity=0.091  Sum_probs=169.8

Q ss_pred             CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCC
Q 004971          319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDG  398 (721)
Q Consensus       319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~  398 (721)
                      ...+..++|+| ||++|+...     .+..|.+||+...+.+.......+...+....|+|++..++....+..      
T Consensus        97 ~~~I~~v~~s~-dg~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~------  164 (337)
T d1gxra_          97 DNYIRSCKLLP-DGCTLIVGG-----EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN------  164 (337)
T ss_dssp             TSBEEEEEECT-TSSEEEEEE-----SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSC------
T ss_pred             CCcEEEEEEcC-CCCEEEEee-----cccccccccccccccccccccccccccccccccccccccccccccccc------
Confidence            33566789999 999988754     345699999986654444444455666777899999999887654443      


Q ss_pred             cceeEEEeccCCCCccee--cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEE
Q 004971          399 NNQLLLENIKSPLPDISL--FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY  473 (721)
Q Consensus       399 ~~~l~~~~~~~~~~~~~~--~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~  473 (721)
                         +.+.++.........  .......++|+++++.+++.. ++.+.+||+.+++.....  ...+..++|+|+++.|+.
T Consensus       165 ---i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~  241 (337)
T d1gxra_         165 ---IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV  241 (337)
T ss_dssp             ---EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             ---ccccccccccccccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccce
Confidence               455555443211111  112233568999999998885 788999999888754433  567789999999999998


Q ss_pred             EecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC
Q 004971          474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL  553 (721)
Q Consensus       474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l  553 (721)
                      .+       .++.+.+|++...      .......+...+..++|+|||++|+..+.   +..|++||..+++.  + ..
T Consensus       242 ~~-------~d~~i~i~d~~~~------~~~~~~~~~~~i~~v~~s~~g~~l~s~s~---Dg~i~iwd~~~~~~--~-~~  302 (337)
T d1gxra_         242 GM-------ESSNVEVLHVNKP------DKYQLHLHESCVLSLKFAYCGKWFVSTGK---DNLLNAWRTPYGAS--I-FQ  302 (337)
T ss_dssp             EE-------TTSCEEEEETTSS------CEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTCCE--E-EE
T ss_pred             ec-------ccccccccccccc------ccccccccccccceEEECCCCCEEEEEeC---CCeEEEEECCCCCE--E-EE
Confidence            76       4678888887543      33444555567888999999999998876   67899999998874  3 33


Q ss_pred             cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971          554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       554 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                      ..+...+..++|||||++|+.++.++       .|++||+
T Consensus       303 ~~~~~~v~~~~~s~d~~~l~t~s~D~-------~I~vWdl  335 (337)
T d1gxra_         303 SKESSSVLSCDISVDDKYIVTGSGDK-------KATVYEV  335 (337)
T ss_dssp             EECSSCEEEEEECTTSCEEEEEETTS-------CEEEEEE
T ss_pred             ccCCCCEEEEEEeCCCCEEEEEeCCC-------eEEEEEE
Confidence            34556678899999999999988775       7999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1.2e-18  Score=175.50  Aligned_cols=275  Identities=11%  Similarity=0.034  Sum_probs=194.1

Q ss_pred             EEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971          313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG  392 (721)
Q Consensus       313 ~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~  392 (721)
                      ..+.+|...+..++|+| ++++|+..+     .+..|++||+.+++.  +.....+...+..+.|+|++..++.......
T Consensus        11 ~~L~GH~~~I~~l~~sp-~~~~l~s~s-----~Dg~i~iWd~~~~~~--~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~   82 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHP-VFSVMVSAS-----EDATIKVWDYETGDF--ERTLKGHTDSVQDISFDHSGKLLASCSADMT   82 (317)
T ss_dssp             CEEECCSSCEEEEEECS-SSSEEEEEE-----SSSCEEEEETTTCCC--CEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEcCCCCCeEEEEEcC-CCCEEEEEe-----CCCeEEEEECCCCCE--EEEEeCCCCcEEEEeeecccccccccccccc
Confidence            44567777788999999 999888754     345699999999874  3334556777888999999999987665544


Q ss_pred             CCCCCCcceeEEEeccCCCC--cceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcC
Q 004971          393 STREDGNNQLLLENIKSPLP--DISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDP  466 (721)
Q Consensus       393 ~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~sp  466 (721)
                      .         ...+......  .............++|+++.++... ++.+.+|++.++......   ...+..+.|+|
T Consensus        83 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (317)
T d1vyhc1          83 I---------KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ  153 (317)
T ss_dssp             C---------CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred             c---------ccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeeccc
Confidence            2         1222211110  0111111223468899999988875 788999999988754433   44667899999


Q ss_pred             CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC--------------------CCEEE
Q 004971          467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD--------------------GKWIV  526 (721)
Q Consensus       467 dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD--------------------g~~l~  526 (721)
                      +++.|+..+       .++.+.+|.+....     ....+..+......+.|+|+                    +..++
T Consensus       154 ~~~~l~~~~-------~d~~v~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (317)
T d1vyhc1         154 DGTLIASCS-------NDQTVRVWVVATKE-----CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL  221 (317)
T ss_dssp             TSSEEEEEE-------TTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE
T ss_pred             CCCEEEEEe-------CCCeEEEEeeccce-----eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeE
Confidence            999998876       46777887765432     33344433333444444444                    44555


Q ss_pred             EEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCC
Q 004971          527 FRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGS  606 (721)
Q Consensus       527 ~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~  606 (721)
                      ..+.   +..|++||..+++.  +..+..+...+..+.|+|+|+.|+.++.++       .|++||+.+++....... |
T Consensus       222 ~~~~---d~~i~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~-h  288 (317)
T d1vyhc1         222 SGSR---DKTIKMWDVSTGMC--LMTLVGHDNWVRGVLFHSGGKFILSCADDK-------TLRVWDYKNKRCMKTLNA-H  288 (317)
T ss_dssp             EEET---TSEEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSCEEEEETTT-------EEEEECCTTSCCCEEEEC-C
T ss_pred             eccC---CCEEEEEECCCCcE--EEEEeCCCCCEEEEEECCCCCEEEEEECCC-------eEEEEECCCCcEEEEEcC-C
Confidence            5554   67899999998875  566666666778899999999999888775       899999998876655543 6


Q ss_pred             CCCcCCeEECCCCCEEEEEEecC
Q 004971          607 AGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       607 ~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                      ...+..++|+|||++|+..+.++
T Consensus       289 ~~~V~~~~~s~~~~~l~s~s~Dg  311 (317)
T d1vyhc1         289 EHFVTSLDFHKTAPYVVTGSVDQ  311 (317)
T ss_dssp             SSCEEEEEECSSSSCEEEEETTS
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCC
Confidence            77889999999999998877654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.81  E-value=5.3e-18  Score=170.61  Aligned_cols=277  Identities=12%  Similarity=0.035  Sum_probs=186.0

Q ss_pred             EEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971          313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG  392 (721)
Q Consensus       313 ~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~  392 (721)
                      +.+.+|...+..++|+| ||++|+...     .+..|.+||+++++..... ...+...+..++|+|+|+.++. ..++ 
T Consensus         6 ~~~~GH~~~V~~l~~s~-dg~~l~s~s-----~Dg~v~vWd~~~~~~~~~~-~~~h~~~v~~v~~~~~g~~~~~-~~d~-   76 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSA-DGKTLFSAD-----AEGHINSWDISTGISNRVF-PDVHATMITGIKTTSKGDLFTV-SWDD-   76 (299)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEE-----TTSCEEEEETTTCCEEECS-SCSCSSCEEEEEECTTSCEEEE-ETTT-
T ss_pred             eEcCCCCCCcEEEEECC-CCCEEEEEc-----CCCeEEEEECCCCcEEEEE-cCCCCCcEEEEEeeccceeecc-ccee-
Confidence            34456777788999999 999988754     3456999999998754432 1345666788999999975443 3332 


Q ss_pred             CCCCCCcceeEEEeccCCC-Cc----ceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-ecCceeeEEcC
Q 004971          393 STREDGNNQLLLENIKSPL-PD----ISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-FKNAFSTVWDP  466 (721)
Q Consensus       393 ~~~~~~~~~l~~~~~~~~~-~~----~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~sp  466 (721)
                              .+.+++..... ..    ..........+.++|||+.++......+.+|+..  +...+. ......++|+|
T Consensus        77 --------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~s~  146 (299)
T d1nr0a2          77 --------HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG--KLTEVPISYNSSCVALSN  146 (299)
T ss_dssp             --------EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT--EEEEEECSSCEEEEEECT
T ss_pred             --------eEEEeccCCccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccc
Confidence                    24445443221 11    1111222334689999998888888889999843  333333 45667889999


Q ss_pred             CCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCc
Q 004971          467 VREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGE  546 (721)
Q Consensus       467 dg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~  546 (721)
                      |++.|+..+       .++.+.+|++.....    .......+...+..++|+|++++|+..+.   +..|++||+.++.
T Consensus       147 ~~~~l~~g~-------~dg~i~~~d~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~~~~~~~~  212 (299)
T d1nr0a2         147 DKQFVAVGG-------QDSKVHVYKLSGASV----SEVKTIVHPAEITSVAFSNNGAFLVATDQ---SRKVIPYSVANNF  212 (299)
T ss_dssp             TSCEEEEEE-------TTSEEEEEEEETTEE----EEEEEEECSSCEEEEEECTTSSEEEEEET---TSCEEEEEGGGTT
T ss_pred             ccccccccc-------ccccccccccccccc----ccccccccccccccccccccccccccccc---ccccccccccccc
Confidence            999999876       578899999875421    22233344557788999999999998876   6789999998765


Q ss_pred             cc-ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeec-CCCCCcCCeEECCCCCEEEE
Q 004971          547 GY-GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQS-GSAGRANHPYFSPDGKSIVF  624 (721)
Q Consensus       547 ~~-~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~~~SpDG~~l~~  624 (721)
                      .. ....+..+...+..++|+|+|++|+.++.++       .|++||+.+++...+... .+........+++++++|+.
T Consensus       213 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s  285 (299)
T d1nr0a2         213 ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN-------SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVS  285 (299)
T ss_dssp             EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTS-------CEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEE
T ss_pred             cccccccccccccccccccccccccceEEEcCCC-------EEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEE
Confidence            31 1222333455678899999999999988875       799999987754433221 12222223345577888887


Q ss_pred             EEecC
Q 004971          625 TSDYG  629 (721)
Q Consensus       625 ~~~~~  629 (721)
                      .+.++
T Consensus       286 ~s~D~  290 (299)
T d1nr0a2         286 AGQDS  290 (299)
T ss_dssp             EETTS
T ss_pred             EeCCC
Confidence            77654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.80  E-value=3.8e-17  Score=173.47  Aligned_cols=357  Identities=8%  Similarity=0.028  Sum_probs=206.3

Q ss_pred             cccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCC--cceeccCCeEEEEeccCCCCcEEEEE
Q 004971          219 FSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGG--WPCWVDESTLFFHRKSEEDDWISVYK  296 (721)
Q Consensus       219 ~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~  296 (721)
                      ..+.++.|.+.++++...+.          ..|.+||+++++..........  ..+|||||+.+|.  ...++.+.+|+
T Consensus        22 ~~~~~~~d~~~~~~V~~~~d----------g~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~--~~~d~~v~vwd   89 (426)
T d1hzua2          22 KKQLNDLDLPNLFSVTLRDA----------GQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLV--IGRDARIDMID   89 (426)
T ss_dssp             SSCCSCCCGGGEEEEEETTT----------TEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEE--EETTSEEEEEE
T ss_pred             CcccccCCCCeEEEEEEcCC----------CEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEE--EeCCCCEEEEE
Confidence            44568888776665554443          6899999999987655433222  4589999997664  33468888885


Q ss_pred             EecCCCcceeccccceEEeC---CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCccc
Q 004971          297 VILPQTGLVSTESVSIQRVT---PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHL  373 (721)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~  373 (721)
                      +......       ...++.   .+...+.+++||| ||++++.....    +..+.+||.++++......  .+...+.
T Consensus        90 ~~t~~~~-------~~~~i~~~~~~~~~~~s~~~sp-DG~~l~v~~~~----~~~v~i~d~~~~~~~~~~~--~~~~~~~  155 (426)
T d1hzua2          90 LWAKEPT-------KVAEIKIGIEARSVESSKFKGY-EDRYTIAGAYW----PPQFAIMDGETLEPKQIVS--TRGMTVD  155 (426)
T ss_dssp             TTSSSCE-------EEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEE----SSEEEEEETTTCCEEEEEE--CCEECSS
T ss_pred             ccCCcee-------EEEEEeCCCCCcceEEeeeecC-CCCEEEEeecC----CCeEEEEcCCccceeEEee--ccCCCcc
Confidence            5433211       111221   1222345788999 99998775433    3458999999987554432  2222333


Q ss_pred             CcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe--CCcEEEEECCCCce
Q 004971          374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNR  451 (721)
Q Consensus       374 ~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~  451 (721)
                      ...+.+++...+.                                      ..++|++.+++..  ...+.+++......
T Consensus       156 ~~~~~~~~~~~~i--------------------------------------~~s~d~~~~~~~~~~~~~i~~~~~~~~~~  197 (426)
T d1hzua2         156 TQTYHPEPRVAAI--------------------------------------IASHEHPEFIVNVKETGKVLLVNYKDIDN  197 (426)
T ss_dssp             SCCEESCCCEEEE--------------------------------------EECSSSSEEEEEETTTTEEEEEECSSSSS
T ss_pred             ceeecCCCceeEE--------------------------------------EECCCCCEEEEecCCCCeEEEEEeccccc
Confidence            3445555543322                                      3344444444432  33444555444332


Q ss_pred             ---EEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC--CCCCcceEEccCCCEE
Q 004971          452 ---RQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN--GKNNAFPSVSPDGKWI  525 (721)
Q Consensus       452 ---~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~SpDg~~l  525 (721)
                         ..+. ...+..+.++|+|++++....      ....+.++.  ....   .....+...  ........+..++...
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~g~~~~~a~~------~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (426)
T d1hzua2         198 LTVTSIGAAPFLADGGWDSSHRYFMTAAN------NSNKVAVID--SKDR---RLSALVDVGKTPHPGRGANFVHPKYGP  266 (426)
T ss_dssp             CEEEEEECCSSEEEEEECTTSCEEEEEET------TCSEEEEEE--TTTT---EEEEEEECSSCCCCSCCEEEEETTTEE
T ss_pred             eeeEEeccCCccEeeeECCCCcEEEeeee------cccceeeee--cccc---cEEEEeccCCcccccceeeeecCCCCc
Confidence               1222 345678899999999998863      233444433  3332   122222222  2233445566666656


Q ss_pred             EEEEeeCCceeEEEEECCCCcc-----cceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE-
Q 004971          526 VFRSTRTGYKNLYIMDAEGGEG-----YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR-  599 (721)
Q Consensus       526 ~~~s~~~g~~~l~~~d~~~g~~-----~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~-  599 (721)
                      ++.....++..+.+++......     +....+..+...+..++|||||++|++.............|.+||+++++.. 
T Consensus       267 ~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~  346 (426)
T d1hzua2         267 VWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY  346 (426)
T ss_dssp             EEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCC
T ss_pred             eEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCe
Confidence            6555555566777777654321     1244455555566889999999999874321100001237999999887643 


Q ss_pred             Eeee-------cCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEec
Q 004971          600 KLIQ-------SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLT  662 (721)
Q Consensus       600 ~l~~-------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt  662 (721)
                      ++..       ..+...+.+++|||||++|+++.......            .+.|.+||.++.+++...
T Consensus       347 ~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~------------~~~i~v~D~~T~k~~~~i  404 (426)
T d1hzua2         347 QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKND------------SSALVVVDDKTLKLKAVV  404 (426)
T ss_dssp             EEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTS------------CCEEEEEETTTTEEEEEE
T ss_pred             EEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCC------------CCeEEEEECCCCeEEEEE
Confidence            2321       01334566789999999998765332111            135999999999876544

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.80  E-value=6.4e-18  Score=171.31  Aligned_cols=275  Identities=11%  Similarity=-0.018  Sum_probs=185.4

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      ..+++|+|+.++.. .  +..+.+|.+....         ....+..+...+..++||| ||++|+...     .++.|.
T Consensus        22 ~~a~~~~g~~l~~~-~--~~~v~i~~~~~~~---------~~~~~~~H~~~v~~~~~sp-~g~~latg~-----~dg~i~   83 (311)
T d1nr0a1          22 VLGNTPAGDKIQYC-N--GTSVYTVPVGSLT---------DTEIYTEHSHQTTVAKTSP-SGYYCASGD-----VHGNVR   83 (311)
T ss_dssp             CCEECTTSSEEEEE-E--TTEEEEEETTCSS---------CCEEECCCSSCEEEEEECT-TSSEEEEEE-----TTSEEE
T ss_pred             EEEEcCCCCEEEEE-e--CCEEEEEECCCCc---------eeEEEcCCCCCEEEEEEeC-CCCeEeccc-----cCceEe
Confidence            34788998744422 2  3445666543332         4455667777788999999 999998754     345699


Q ss_pred             EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC--CcceecccCCCCceeCc
Q 004971          351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL--PDISLFRFDGSFPSFSP  428 (721)
Q Consensus       351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~Sp  428 (721)
                      +||+.+++.........+...+..++|+||++.|+.......       ..+.++++....  ..+.........++|+|
T Consensus        84 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~-------~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~  156 (311)
T d1nr0a1          84 IWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE-------RFGHVFLFDTGTSNGNLTGQARAMNSVDFKP  156 (311)
T ss_dssp             EEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS-------CSEEEEETTTCCBCBCCCCCSSCEEEEEECS
T ss_pred             eeeeeccccccccccccccCcccccccccccccccccccccc-------ccccccccccccccccccccccccccccccc
Confidence            999988764332333445667888999999999988765443       223444444332  22222222334578999


Q ss_pred             CCCEEEE-Ee-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccce
Q 004971          429 KGDRIAF-VE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAV  503 (721)
Q Consensus       429 DG~~la~-~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  503 (721)
                      +|+.++. .+ ++.|.+||+.+++.....   ...+..+.|+|+++.|+..+       .++.+.+|++....     ..
T Consensus       157 ~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~-------~d~~v~~~d~~~~~-----~~  224 (311)
T d1nr0a1         157 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG-------GDGTIVLYNGVDGT-----KT  224 (311)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSCEEEEETTTCC-----EE
T ss_pred             cceeeecccccccccccccccccccccccccccccccccccCcccccccccc-------cccccccccccccc-----cc
Confidence            9986444 43 688999999988765544   45678999999999999886       56888888865432     22


Q ss_pred             EEccc-------CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCc-CceeeEEccCCCEEEEE
Q 004971          504 RRLTT-------NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPW-SDTMCNWSPDGEWIAFA  575 (721)
Q Consensus       504 ~~l~~-------~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~-~~~~~~~SpDG~~l~~~  575 (721)
                      ..+..       +...+..++|+|||++|+..+.   +..|++||+.+++.  +..+..+.. ......+.++++.|+.+
T Consensus       225 ~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~---Dg~v~iwd~~t~~~--~~~l~~~~~~~~~~~~~~~~~~~l~s~  299 (311)
T d1nr0a1         225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA---DKTIKIWNVATLKV--EKTIPVGTRIEDQQLGIIWTKQALVSI  299 (311)
T ss_dssp             EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTTEE--EEEEECCSSGGGCEEEEEECSSCEEEE
T ss_pred             ccccccccccccccccccccccCCCCCEEEEEeC---CCeEEEEECCCCcE--EEEEECCCCccceEEEEEecCCEEEEE
Confidence            33322       2345677899999999998876   67899999999885  555543322 22334556667778888


Q ss_pred             EccCCCCCCceeEEEEecC
Q 004971          576 SDRDNPGSGSFEMYLIHPN  594 (721)
Q Consensus       576 ~~~~~~~~~~~~i~~~d~~  594 (721)
                      +.++       .|.+||++
T Consensus       300 s~dG-------~i~~wd~d  311 (311)
T d1nr0a1         300 SANG-------FINFVNPE  311 (311)
T ss_dssp             ETTC-------CEEEEETT
T ss_pred             ECCC-------EEEEEeCC
Confidence            8775       89999974

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.79  E-value=2.4e-17  Score=177.56  Aligned_cols=327  Identities=11%  Similarity=0.089  Sum_probs=204.1

Q ss_pred             cCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc---cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCc
Q 004971          323 FTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF---VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGN  399 (721)
Q Consensus       323 ~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~---~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~  399 (721)
                      ..+.|++ |+++++.  .     +..|++||+.+++...+...   ..+...+..+.|||||++|++.............
T Consensus        20 ~~~~W~~-d~~~~~~--~-----~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~   91 (470)
T d2bgra1          20 YSLRWIS-DHEYLYK--Q-----ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT   91 (470)
T ss_dssp             CCCEECS-SSEEEEE--S-----SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             cCCEeCC-CCEEEEE--c-----CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccC
Confidence            4788999 9986643  2     23499999999987665422   2223456788999999999998765443222333


Q ss_pred             ceeEEEeccCC-CCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEee---------------------c
Q 004971          400 NQLLLENIKSP-LPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYF---------------------K  457 (721)
Q Consensus       400 ~~l~~~~~~~~-~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~~---------------------~  457 (721)
                      ..++++++.++ ...+.........+.|||||++|||..+..++++++.+++..++..                     +
T Consensus        92 ~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~  171 (470)
T d2bgra1          92 ASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS  171 (470)
T ss_dssp             EEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             ceEEEEECCCCcccccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecC
Confidence            56888898776 2233333444456899999999999999999999999998777651                     1


Q ss_pred             CceeeEEcCCCCeEEEEecCCCC---------------------------CCCCCcEEEEEEEccCCCCcc--ceEEc--
Q 004971          458 NAFSTVWDPVREAVVYTSGGPEF---------------------------ASESSEVDIISINVDDVDGVS--AVRRL--  506 (721)
Q Consensus       458 ~~~~~~~spdg~~la~~~~~~~~---------------------------~~~~~~~~i~~~~~~~~~~~~--~~~~l--  506 (721)
                      ....+.|||||++|++.......                           ........++.++..+.....  .....  
T Consensus       172 ~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  251 (470)
T d2bgra1         172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA  251 (470)
T ss_dssp             SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECC
T ss_pred             CccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCC
Confidence            12357799999999998631100                           000112233333333210000  00000  


Q ss_pred             ----ccCCCCCcceEEccCCCEEEEEEeeCCce---eEEEEECCCCcccceEECcC--------C----CcCceeeEEcc
Q 004971          507 ----TTNGKNNAFPSVSPDGKWIVFRSTRTGYK---NLYIMDAEGGEGYGLHRLTE--------G----PWSDTMCNWSP  567 (721)
Q Consensus       507 ----~~~~~~~~~~~~SpDg~~l~~~s~~~g~~---~l~~~d~~~g~~~~~~~l~~--------~----~~~~~~~~~Sp  567 (721)
                          .........+.|+++++.+++..++.++.   .++.+|..++..   ..+..        .    ......+.|++
T Consensus       252 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  328 (470)
T d2bgra1         252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRW---NCLVARQHIEMSTTGWVGRFRPSEPHFTL  328 (470)
T ss_dssp             CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEE---EECGGGCEEEECSSSCSSSSSCCCCEECT
T ss_pred             ccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcE---EEEEEEeeeeeeccceeecccCCCceeee
Confidence                00111223578999998777776665432   566677777763   33211        0    11224578888


Q ss_pred             CCCEE-EEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCc
Q 004971          568 DGEWI-AFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYG  646 (721)
Q Consensus       568 DG~~l-~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~  646 (721)
                      +++.. ++.+..    .+..+||+++.+++..++++.  ....+..+ +++|++.|+|.+...+..  |        ...
T Consensus       329 ~~~~~~~~~s~~----dg~~~ly~~~~~g~~~~~lt~--g~~~v~~~-~~~d~~~iyf~a~~~~~~--p--------~~~  391 (470)
T d2bgra1         329 DGNSFYKIISNE----EGYRHICYFQIDKKDCTFITK--GTWEVIGI-EALTSDYLYYISNEYKGM--P--------GGR  391 (470)
T ss_dssp             TSSEEEEEEECT----TSCEEEEEEETTCSCCEESCC--SSSCEEEE-EEECSSEEEEEESCGGGC--T--------TCB
T ss_pred             cCCCcEEEEecc----CcCceeEEEeccCCceeeecc--CCeeEEEE-EEECCCEEEEEEecCCCC--c--------ceE
Confidence            87655 444444    377899999999998888874  23333333 677888999887643210  0        024


Q ss_pred             cEEEEEcCCC-CeEEecc----CCCCCCCceecCCc
Q 004971          647 EIFKIKLDGS-DLKRLTQ----NSFEDGTPAWGPRF  677 (721)
Q Consensus       647 ~l~~~d~~~~-~~~~lt~----~~~~~~~~~~sp~~  677 (721)
                      +||.++++++ +.+.||.    +......++|||+.
T Consensus       392 ~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdg  427 (470)
T d2bgra1         392 NLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEA  427 (470)
T ss_dssp             EEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTS
T ss_pred             EEEEEECCCCCceeEecccccCCCCCEEEEEECCCC
Confidence            6999999885 5677764    33345678999974

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.9e-17  Score=175.21  Aligned_cols=327  Identities=14%  Similarity=0.172  Sum_probs=202.2

Q ss_pred             CceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC-CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCccee
Q 004971          324 TPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS-PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQL  402 (721)
Q Consensus       324 ~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~-~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l  402 (721)
                      .+.|.+ |+++++.  ..    ++.|+++|+.+++.+.+..... .......+.|||||++|++.......-.......+
T Consensus        21 ~~~W~~-~~~~~~~--~~----~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~   93 (465)
T d1xfda1          21 EAKWIS-DTEFIYR--EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY   93 (465)
T ss_dssp             CCCBSS-SSCBCCC--CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred             CCEEeC-CCcEEEE--eC----CCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccE
Confidence            567888 8876532  22    2349999999988766543221 12234556899999999987654432222333568


Q ss_pred             EEEeccCCCC-cceecc---cCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-ecC-------------------
Q 004971          403 LLENIKSPLP-DISLFR---FDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-FKN-------------------  458 (721)
Q Consensus       403 ~~~~~~~~~~-~~~~~~---~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-~~~-------------------  458 (721)
                      ++.++..+.. .+....   .....+.|||||++|||+.+..||+++..++...+++ .+.                   
T Consensus        94 ~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~  173 (465)
T d1xfda1          94 VLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK  173 (465)
T ss_dssp             EEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred             EEEEccCCceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhcc
Confidence            8888876532 222211   1223589999999999999999999999988877776 211                   


Q ss_pred             -ceeeEEcCCCCeEEEEecCCC---------C----------------CCCCCcEEEEEEEccCCCCccceEE--cccCC
Q 004971          459 -AFSTVWDPVREAVVYTSGGPE---------F----------------ASESSEVDIISINVDDVDGVSAVRR--LTTNG  510 (721)
Q Consensus       459 -~~~~~~spdg~~la~~~~~~~---------~----------------~~~~~~~~i~~~~~~~~~~~~~~~~--l~~~~  510 (721)
                       ...+.|||||++|||......         +                ......+.++.++..+.    ....  +....
T Consensus       174 ~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~----~~~~~~~~~~~  249 (465)
T d1xfda1         174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP----THDLEMMPPDD  249 (465)
T ss_dssp             SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS----CCCEECCCCCC
T ss_pred             ccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCC----cEEEEEeccCc
Confidence             135679999999999852110         0                01123356666666543    1111  11111


Q ss_pred             -----CCCcceEEccCCCEEEEEEeeCC-ceeEEEEECCCCcccceEECcCCCc---CceeeEEccCCCEEEEEEccCCC
Q 004971          511 -----KNNAFPSVSPDGKWIVFRSTRTG-YKNLYIMDAEGGEGYGLHRLTEGPW---SDTMCNWSPDGEWIAFASDRDNP  581 (721)
Q Consensus       511 -----~~~~~~~~SpDg~~l~~~s~~~g-~~~l~~~d~~~g~~~~~~~l~~~~~---~~~~~~~SpDG~~l~~~~~~~~~  581 (721)
                           .....+.|+||++.+++..+|.. ...|+++|..+|+.+.+..-....+   ....+.|+|||+.++|...... 
T Consensus       250 ~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~-  328 (465)
T d1xfda1         250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ-  328 (465)
T ss_dssp             GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC-
T ss_pred             CccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeee-
Confidence                 12234689999987777777654 3489999999998532222122221   1246899999998877532111 


Q ss_pred             CCCceeEEEEec-------CCCceEEeeecCCCCCcCC-eEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEc
Q 004971          582 GSGSFEMYLIHP-------NGTGLRKLIQSGSAGRANH-PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL  653 (721)
Q Consensus       582 ~~~~~~i~~~d~-------~~~~~~~l~~~~~~~~~~~-~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~  653 (721)
                       ++..++|.+.+       .++..++||.  ....+.. +.|+.+++.|+|.+......            ..+||.+++
T Consensus       329 -~g~~~ly~~~~~~~~~~~~~~~~~~LT~--G~w~V~~i~~~d~~~~~vyF~a~~~~p~------------~~hly~v~l  393 (465)
T d1xfda1         329 -GGRGKFYHITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDEKGNKIYFLSTEDLPR------------RRQLYSANT  393 (465)
T ss_dssp             -SSSSCEEEEEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEETTTTEEEEEESSSCTT------------CCEEEEECS
T ss_pred             -cccCceEEEEeccccccCCCceeEEecc--CCceEEEEEEEcCCCCEEEEEEeCCCCC------------ceEEEEEEC
Confidence             24456776653       3444566664  2233333 57999999999998754311            247999999


Q ss_pred             CCCCeE-EeccC---CCCCCCceecCCc
Q 004971          654 DGSDLK-RLTQN---SFEDGTPAWGPRF  677 (721)
Q Consensus       654 ~~~~~~-~lt~~---~~~~~~~~~sp~~  677 (721)
                      +++..+ .||..   ..+-..+.|||+.
T Consensus       394 ~g~~~~~~lt~~~~~~~~~~~~~~S~~~  421 (465)
T d1xfda1         394 VGNFNRQCLSCDLVENCTYFSASFSHSM  421 (465)
T ss_dssp             STTCCCBCSSTTSSSSCCCCEEEECTTS
T ss_pred             CCCCcceeeccccCCCCCEEEEEECCCC
Confidence            987654 44421   2234578999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=7.1e-17  Score=164.66  Aligned_cols=275  Identities=9%  Similarity=0.030  Sum_probs=186.3

Q ss_pred             EEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971          313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG  392 (721)
Q Consensus       313 ~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~  392 (721)
                      +.+.+|...+..++|+| ++++|+..+     .++.|.+||+.+++..  .....+...+..++|+|+++.++....+..
T Consensus        49 ~tL~GH~~~I~~l~~s~-~~~~l~sgs-----~Dg~v~iWd~~~~~~~--~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~  120 (340)
T d1tbga_          49 RTLRGHLAKIYAMHWGT-DSRLLVSAS-----QDGKLIIWDSYTTNKV--HAIPLRSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEE-----TTTEEEEEETTTTEEE--EEEECSCSCEEEEEECTTSSEEEEEETTCC
T ss_pred             EEECCCCCCEEEEEECC-CCCEEEEEE-----CCCceeeeecccceeE--EEEecccccEEeeEeeccceeeeeecccce
Confidence            34567777888999999 999998754     4456999999998743  333455677888999999999988766554


Q ss_pred             CCCCCCcceeEEEeccCCCCc---ceecccCC--CCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe---ecCceeeE
Q 004971          393 STREDGNNQLLLENIKSPLPD---ISLFRFDG--SFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFSTV  463 (721)
Q Consensus       393 ~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~--~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~~  463 (721)
                               +...+.......   ........  ........+..+... .+.....+...........   ...+....
T Consensus       121 ---------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (340)
T d1tbga_         121 ---------CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS  191 (340)
T ss_dssp             ---------EEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             ---------eecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeec
Confidence                     333332222111   00010000  011112222333333 3445555555544433222   34556778


Q ss_pred             EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC
Q 004971          464 WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE  543 (721)
Q Consensus       464 ~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~  543 (721)
                      +.+++..++...       .++.+.+|++...     .....+..+...+..++|+|||++|+..+.   +..|++||+.
T Consensus       192 ~~~~~~~~~~~~-------~d~~v~i~d~~~~-----~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~---d~~i~~~~~~  256 (340)
T d1tbga_         192 LAPDTRLFVSGA-------CDASAKLWDVREG-----MCRQTFTGHESDINAICFFPNGNAFATGSD---DATCRLFDLR  256 (340)
T ss_dssp             ECTTSSEEEEEE-------TTTEEEEEETTTT-----EEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETT
T ss_pred             cccccceeEEee-------cCceEEEEECCCC-----cEEEEEeCCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeec
Confidence            888888888765       4678888876432     245566666677888999999999998886   7889999998


Q ss_pred             CCcccceEEC--cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCE
Q 004971          544 GGEGYGLHRL--TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKS  621 (721)
Q Consensus       544 ~g~~~~~~~l--~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~  621 (721)
                      ....  +..+  ......+..++|+|+|+.|+.++.++       .|++||+.+++...... +|...+..++|+|||++
T Consensus       257 ~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg-------~i~iwd~~~~~~~~~~~-~H~~~V~~l~~s~d~~~  326 (340)
T d1tbga_         257 ADQE--LMTYSHDNIICGITSVSFSKSGRLLLAGYDDF-------NCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMA  326 (340)
T ss_dssp             TTEE--EEEECCTTCCSCEEEEEECSSSCEEEEEETTS-------CEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSC
T ss_pred             cccc--ccccccccccCceEEEEECCCCCEEEEEECCC-------EEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCE
Confidence            7764  3322  23344567899999999999888775       79999999888766554 37778899999999999


Q ss_pred             EEEEEecC
Q 004971          622 IVFTSDYG  629 (721)
Q Consensus       622 l~~~~~~~  629 (721)
                      |+..+.++
T Consensus       327 l~s~s~Dg  334 (340)
T d1tbga_         327 VATGSWDS  334 (340)
T ss_dssp             EEEEETTS
T ss_pred             EEEEccCC
Confidence            98877665

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=7.9e-17  Score=167.64  Aligned_cols=250  Identities=13%  Similarity=0.060  Sum_probs=166.0

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      .+..++||| ||++|++..     .++.|.+||+++++...+..+.+|...+..++|+|++++|+..+.           
T Consensus         9 pIt~~~~s~-dg~~la~~~-----~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~-----------   71 (371)
T d1k8kc_           9 PISCHAWNK-DRTQIAICP-----NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT-----------   71 (371)
T ss_dssp             CCCEEEECT-TSSEEEEEC-----SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET-----------
T ss_pred             CeEEEEECC-CCCEEEEEe-----CCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEEC-----------
Confidence            356789999 999998843     345699999988765555544444445555555555555444322           


Q ss_pred             eeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe-----ecCceeeEEcCCCCeEEEEe
Q 004971          401 QLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY-----FKNAFSTVWDPVREAVVYTS  475 (721)
Q Consensus       401 ~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~-----~~~~~~~~~spdg~~la~~~  475 (721)
                                                           ++.|++||+.++......     ...+..+.|+|+++.|+..+
T Consensus        72 -------------------------------------D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s  114 (371)
T d1k8kc_          72 -------------------------------------DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS  114 (371)
T ss_dssp             -------------------------------------TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE
T ss_pred             -------------------------------------CCeEEEEeecccccccccccccccccccccccccccccceeec
Confidence                                                 334555555544432221     34567889999999999886


Q ss_pred             cCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc-------
Q 004971          476 GGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY-------  548 (721)
Q Consensus       476 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~-------  548 (721)
                             .++.+.+|.++.... ..........+...+..++|+|||++|+..+.   +..|.+|+...+...       
T Consensus       115 -------~d~~i~i~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~---D~~v~v~~~~~~~~~~~~~~~~  183 (371)
T d1k8kc_         115 -------GSRVISICYFEQEND-WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC---DFKCRIFSAYIKEVEERPAPTP  183 (371)
T ss_dssp             -------TTSSEEEEEEETTTT-EEEEEEECTTCCSCEEEEEECTTSSEEEEEET---TSCEEEEECCCTTTSCCCCCBT
T ss_pred             -------ccCcceeeeeecccc-cccccccccccccccccccccccccceecccc---CcEEEEEeeccCcccccccccc
Confidence                   568899999887553 00011122233456677899999999998876   678999997654311       


Q ss_pred             ---------ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCC
Q 004971          549 ---------GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDG  619 (721)
Q Consensus       549 ---------~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG  619 (721)
                               .+.....+...+..++|+|||+.|++++.++       .|.+||+..++....... +...+..++|+|||
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~-~~~~v~s~~fs~d~  255 (371)
T d1k8kc_         184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS-------TVCLADADKKMAVATLAS-ETLPLLAVTFITES  255 (371)
T ss_dssp             TBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT-------EEEEEEGGGTTEEEEEEC-SSCCEEEEEEEETT
T ss_pred             ccccccceeeeeeccCccCcEEEEEeecccccccccccCC-------cceEEeeecccceeeeec-ccccceeeeecCCC
Confidence                     1222233445567899999999999988775       899999988876554443 56678889999999


Q ss_pred             CEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971          620 KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK  659 (721)
Q Consensus       620 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  659 (721)
                      +.|+. +.+...               .+|.++...+...
T Consensus       256 ~~la~-g~d~~~---------------~~~~~~~~~~~~~  279 (371)
T d1k8kc_         256 SLVAA-GHDCFP---------------VLFTYDSAAGKLS  279 (371)
T ss_dssp             EEEEE-ETTSSC---------------EEEEEETTTTEEE
T ss_pred             CEEEE-EcCCce---------------EEEEeeCCCceEE
Confidence            87764 333321               3777776555443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=9e-17  Score=167.75  Aligned_cols=274  Identities=11%  Similarity=0.018  Sum_probs=179.8

Q ss_pred             CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeec----------------ccCCCCcccCcEEcCC
Q 004971          317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTR----------------FVSPKTHHLNPFISPD  380 (721)
Q Consensus       317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~----------------~~~~~~~~~~~~~Spd  380 (721)
                      .|...+..++||| ||++|+...      +..|.+||+.+++......                ...+...+..++|+||
T Consensus        60 ~H~~~V~~l~fs~-dg~~lasg~------d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  132 (388)
T d1erja_          60 DHTSVVCCVKFSN-DGEYLATGC------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD  132 (388)
T ss_dssp             ECSSCCCEEEECT-TSSEEEEEC------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred             CCCCcEEEEEECC-CCCEEEEEe------CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC
Confidence            4656778999999 999887632      3459999999886432211                1122334667899999


Q ss_pred             CCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee--cccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe--
Q 004971          381 SSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL--FRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY--  455 (721)
Q Consensus       381 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~--  455 (721)
                      |+.|+....++.         +.+++...+......  .......+.+++++..++... .+.+.+||..+.......  
T Consensus       133 ~~~l~s~~~dg~---------v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  203 (388)
T d1erja_         133 GKFLATGAEDRL---------IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI  203 (388)
T ss_dssp             SSEEEEEETTSC---------EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             CCcceecccccc---------cccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccc
Confidence            999998766554         444554433111111  112233468899999888874 778999999887755444  


Q ss_pred             ecCceeeEEc-CCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc-------ccCCCCCcceEEccCCCEEEE
Q 004971          456 FKNAFSTVWD-PVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL-------TTNGKNNAFPSVSPDGKWIVF  527 (721)
Q Consensus       456 ~~~~~~~~~s-pdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~SpDg~~l~~  527 (721)
                      ........++ ++++.|+..+       .++.+.+|.+....     ....+       ..+...+..++|+|||++|+.
T Consensus       204 ~~~~~~~~~~~~~~~~l~~~~-------~d~~i~i~~~~~~~-----~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  271 (388)
T d1erja_         204 EDGVTTVAVSPGDGKYIAAGS-------LDRAVRVWDSETGF-----LVERLDSENESGTGHKDSVYSVVFTRDGQSVVS  271 (388)
T ss_dssp             SSCEEEEEECSTTCCEEEEEE-------TTSCEEEEETTTCC-----EEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccCCCCCeEEEEc-------CCCeEEEeecccCc-----cceeeccccccccCCCCCEEEEEECCCCCEEEE
Confidence            3333444454 5788888776       46778887765432     22222       223345677899999999998


Q ss_pred             EEeeCCceeEEEEECCCCcccc----------eEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971          528 RSTRTGYKNLYIMDAEGGEGYG----------LHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG  597 (721)
Q Consensus       528 ~s~~~g~~~l~~~d~~~g~~~~----------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~  597 (721)
                      .+.   +..|.+||+.++....          ......+...+..++|+|||++|+.++.++       .|++||+.+++
T Consensus       272 ~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg-------~i~vwd~~~~~  341 (388)
T d1erja_         272 GSL---DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR-------GVLFWDKKSGN  341 (388)
T ss_dssp             EET---TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS-------EEEEEETTTCC
T ss_pred             EEC---CCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCC-------EEEEEECCCCc
Confidence            876   6789999987664311          111222344567899999999999988875       89999999988


Q ss_pred             eEEeeecCCCCCcCCe------EECCCCCEEEEEEecC
Q 004971          598 LRKLIQSGSAGRANHP------YFSPDGKSIVFTSDYG  629 (721)
Q Consensus       598 ~~~l~~~~~~~~~~~~------~~SpDG~~l~~~~~~~  629 (721)
                      ....... |...+..+      .|+|||++|+..+.++
T Consensus       342 ~~~~l~~-H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg  378 (388)
T d1erja_         342 PLLMLQG-HRNSVISVAVANGSSLGPEYNVFATGSGDC  378 (388)
T ss_dssp             EEEEEEC-CSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred             EEEEEeC-CCCCEEEEEEecCcccCCCCCEEEEEeCCC
Confidence            7665543 55555544      4688999998877665

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.75  E-value=6.5e-16  Score=154.73  Aligned_cols=266  Identities=13%  Similarity=0.156  Sum_probs=179.2

Q ss_pred             eeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcce-ecccCCCCc
Q 004971          346 YRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDIS-LFRFDGSFP  424 (721)
Q Consensus       346 ~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~  424 (721)
                      +..|.+||+++++.......   ......++|||||++|+.+....        ..+.++++.+....-. ........+
T Consensus        11 ~~~v~v~D~~t~~~~~~i~~---g~~p~~va~spdG~~l~v~~~~~--------~~i~v~d~~t~~~~~~~~~~~~~~~~   79 (301)
T d1l0qa2          11 SDNISVIDVTSNKVTATIPV---GSNPMGAVISPDGTKVYVANAHS--------NDVSIIDTATNNVIATVPAGSSPQGV   79 (301)
T ss_dssp             TTEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEEGGG--------TEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred             CCEEEEEECCCCeEEEEEEC---CCCceEEEEeCCCCEEEEEECCC--------CEEEEEECCCCceeeeeecccccccc
Confidence            34599999999975443322   34456789999999998755433        3577777765522111 112223457


Q ss_pred             eeCcCCCEEEEEe--CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCc
Q 004971          425 SFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGV  500 (721)
Q Consensus       425 ~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~  500 (721)
                      .|++||+.+++..  ...+.+++..+++.....  ........++|||+.+++...      .+....++..  ...   
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~------~~~~~~~~~~--~~~---  148 (301)
T d1l0qa2          80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNN------GDKTVSVINT--VTK---  148 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET------TTTEEEEEET--TTT---
T ss_pred             ccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeec------cccceeeeec--ccc---
Confidence            8999999888773  567899999888754433  455678999999999988763      3344444443  322   


Q ss_pred             cceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCC
Q 004971          501 SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN  580 (721)
Q Consensus       501 ~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~  580 (721)
                      .....+. .......++++||++++++....  ...+++++....+   +............++|+++|+.+++...+. 
T Consensus       149 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~-  221 (301)
T d1l0qa2         149 AVINTVS-VGRSPKGIAVTPDGTKVYVANFD--SMSISVIDTVTNS---VIDTVKVEAAPSGIAVNPEGTKAYVTNVDK-  221 (301)
T ss_dssp             EEEEEEE-CCSSEEEEEECTTSSEEEEEETT--TTEEEEEETTTTE---EEEEEECSSEEEEEEECTTSSEEEEEEECS-
T ss_pred             ceeeecc-cCCCceEEEeeccccceeeeccc--cccccccccccee---eeecccccCCcceeeccccccccccccccc-
Confidence            1222332 23356678999999999887653  3467777777665   333332333446789999999998876553 


Q ss_pred             CCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe-E
Q 004971          581 PGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL-K  659 (721)
Q Consensus       581 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~  659 (721)
                         ....|++||+.+++......  ....+..++|||||++|+++...++                .|.+||++++++ .
T Consensus       222 ---~~~~v~v~D~~t~~~~~~~~--~~~~~~~va~spdg~~l~va~~~~~----------------~i~v~D~~t~~~~~  280 (301)
T d1l0qa2         222 ---YFNTVSMIDTGTNKITARIP--VGPDPAGIAVTPDGKKVYVALSFCN----------------TVSVIDTATNTITA  280 (301)
T ss_dssp             ---SCCEEEEEETTTTEEEEEEE--CCSSEEEEEECTTSSEEEEEETTTT----------------EEEEEETTTTEEEE
T ss_pred             ---eeeeeeeeecCCCeEEEEEc--CCCCEEEEEEeCCCCEEEEEECCCC----------------eEEEEECCCCeEEE
Confidence               33579999999987665444  3456788999999999877665543                499999998865 3


Q ss_pred             Ee
Q 004971          660 RL  661 (721)
Q Consensus       660 ~l  661 (721)
                      .+
T Consensus       281 ~~  282 (301)
T d1l0qa2         281 TM  282 (301)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=5.6e-16  Score=157.79  Aligned_cols=296  Identities=12%  Similarity=0.091  Sum_probs=174.9

Q ss_pred             CEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC
Q 004971          333 KFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP  412 (721)
Q Consensus       333 ~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~  412 (721)
                      ++.+|+...   ++..|++|++.+.....+.....+...+..++|||||++|+++.....        .+.++++.....
T Consensus         3 ~~~v~v~~~---~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~--------~i~~~~i~~~~~   71 (333)
T d1ri6a_           3 KQTVYIASP---ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEF--------RVLAYRIAPDDG   71 (333)
T ss_dssp             EEEEEEEEG---GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTT--------EEEEEEECTTTC
T ss_pred             ceEEEEECC---CCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCC--------eEEEEEEeCCCC
Confidence            455665543   455699999875543222222334667789999999999976553222        345555543322


Q ss_pred             ccee-----cccCCCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe-----ecCceeeEEcCCCCeEEEEecCCCC
Q 004971          413 DISL-----FRFDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY-----FKNAFSTVWDPVREAVVYTSGGPEF  480 (721)
Q Consensus       413 ~~~~-----~~~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~  480 (721)
                      .+..     .......++|||||++|++..  ...+.+++..........     ...+..+.++||+++++....    
T Consensus        72 ~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~----  147 (333)
T d1ri6a_          72 ALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL----  147 (333)
T ss_dssp             CEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG----
T ss_pred             cEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecccc----
Confidence            2211     112344578999999998884  556888887766543332     345678899999999998873    


Q ss_pred             CCCCCcEEEEEEEccCCCCccceEEcc-cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC---cC-
Q 004971          481 ASESSEVDIISINVDDVDGVSAVRRLT-TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL---TE-  555 (721)
Q Consensus       481 ~~~~~~~~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l---~~-  555 (721)
                        ....+.+|................. ........++|+++++.++......+...++.++...........+   .. 
T Consensus       148 --~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  225 (333)
T d1ri6a_         148 --KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN  225 (333)
T ss_dssp             --GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred             --ccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecC
Confidence              3456677766554320000111111 1123446689999999988777654444455444443332111111   11 


Q ss_pred             --CCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcC
Q 004971          556 --GPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISA  633 (721)
Q Consensus       556 --~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~  633 (721)
                        .......++++|||++++......    +...+|..+.+++...............+++|||||++|+++..+.+.- 
T Consensus       226 ~~~~~~~~~~~~s~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v-  300 (333)
T d1ri6a_         226 FSDTRWAADIHITPDGRHLYACDRTA----SLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHI-  300 (333)
T ss_dssp             CCSCCCEEEEEECTTSSEEEEEETTT----TEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEE-
T ss_pred             CCccccceeEEEecccCceeeecccC----CeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeE-
Confidence              112235678999999888777653    3344555554444333332222445677899999999988765554321 


Q ss_pred             CCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          634 EPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       634 ~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                                   .||.+|.++|+++++..
T Consensus       301 -------------~v~~id~~tG~l~~~~~  317 (333)
T d1ri6a_         301 -------------SVYEIVGEQGLLHEKGR  317 (333)
T ss_dssp             -------------EEEEEETTTTEEEEEEE
T ss_pred             -------------EEEEEECCCCcEEEEEe
Confidence                         36667888888776654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=1e-16  Score=170.04  Aligned_cols=360  Identities=7%  Similarity=-0.031  Sum_probs=210.2

Q ss_pred             ccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCC--cceeccCCeEEEEeccCCCCcEEEEEEec
Q 004971          222 AVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGG--WPCWVDESTLFFHRKSEEDDWISVYKVIL  299 (721)
Q Consensus       222 ~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~~  299 (721)
                      ....|...+.++...+.          ..|.+||.++++..........  ..+|||||+.+|..  ..++.+.+|.+..
T Consensus        25 ~~~~~~~~~~~v~~~d~----------g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~--s~dg~v~~~d~~t   92 (432)
T d1qksa2          25 MNDWDLENLFSVTLRDA----------GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVI--GRDGKVNMIDLWM   92 (432)
T ss_dssp             CSCCCGGGEEEEEETTT----------TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEE--ETTSEEEEEETTS
T ss_pred             eecCCCCcEEEEEEcCC----------CEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEE--cCCCCEEEEEeeC
Confidence            44555544544344433          5899999999997766543322  45899999976642  3478888886543


Q ss_pred             CCCcceeccccceEEeC---CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeeccc---------C
Q 004971          300 PQTGLVSTESVSIQRVT---PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFV---------S  367 (721)
Q Consensus       300 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~---------~  367 (721)
                      .+..       ....+.   .+...+..+.||| ||++|+.....    +..+.+||.++++........         .
T Consensus        93 ~~~~-------~~~~i~~~~~~~~~~~s~~~Sp-DG~~l~vs~~~----~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~  160 (432)
T d1qksa2          93 KEPT-------TVAEIKIGSEARSIETSKMEGW-EDKYAIAGAYW----PPQYVIMDGETLEPKKIQSTRGMTYDEQEYH  160 (432)
T ss_dssp             SSCC-------EEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEE----TTEEEEEETTTCCEEEEEECCEECTTTCCEE
T ss_pred             CCce-------EEEEEecCCCCCCeEEecccCC-CCCEEEEEcCC----CCeEEEEeCccccceeeeccCCccccceecc
Confidence            3211       112221   1122345678899 99998765433    345999999999865443211         0


Q ss_pred             CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC-cceecc--cCCCCceeCcCCCEEEEEe--CCcEE
Q 004971          368 PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP-DISLFR--FDGSFPSFSPKGDRIAFVE--FPGVY  442 (721)
Q Consensus       368 ~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~--~~~~~~~~SpDG~~la~~~--~~~l~  442 (721)
                      +......+.+||||+.+++.....        ..+++.+...... .+....  .....++++|||++++...  ...+.
T Consensus       161 ~~~~~~~v~~s~dg~~~~vs~~~~--------~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~  232 (432)
T d1qksa2         161 PEPRVAAILASHYRPEFIVNVKET--------GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLV  232 (432)
T ss_dssp             SCCCEEEEEECSSSSEEEEEETTT--------TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred             CCCceeEEEECCCCCEEEEEEccC--------CeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEE
Confidence            122233457788888877754433        3466666544321 112111  1223578999999988874  66799


Q ss_pred             EEECCCCceEEEe-e-------cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCc
Q 004971          443 VVNSDGSNRRQVY-F-------KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNA  514 (721)
Q Consensus       443 v~d~~~g~~~~l~-~-------~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  514 (721)
                      +++.++++..... .       .......+...+...+...      ..+..+.+|.....         .+..+...+.
T Consensus       233 v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~------lg~~~v~~~~~~~~---------~~~~~~~~v~  297 (432)
T d1qksa2         233 VIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSH------MGDDSVALIGTDPE---------GHPDNAWKIL  297 (432)
T ss_dssp             EEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEB------SSSSEEEEEECCTT---------TCTTTBTSEE
T ss_pred             EeecccceEEEEeccCccccccCcccceecCCCCceecccc------cCCceEEecccccc---------cccccccEEE
Confidence            9999888765443 1       1122233333333333322      12344444432221         1122223455


Q ss_pred             ceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971          515 FPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN  594 (721)
Q Consensus       515 ~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~  594 (721)
                      ...++|+|..++..+.   ....++|...+...        +......+++ |||+.|+..+.+.       .+.+|++.
T Consensus       298 ~~~~~~~g~~~~~~s~---p~~~~lw~~~~~~~--------~~~~~~sv~v-pDg~~la~~s~d~-------~~k~w~~~  358 (432)
T d1qksa2         298 DSFPALGGGSLFIKTH---PNSQYLYVDATLNP--------EAEISGSVAV-FDIKAMTGDGSDP-------EFKTLPIA  358 (432)
T ss_dssp             EEEECSCSCCCCEECC---TTCSEEEEECTTCS--------SHHHHTCEEE-EEGGGCCCSSSCC-------CEEEECHH
T ss_pred             EEEEcCCCCeEEEEec---CCccceeecccCCC--------CCCeeeEEEE-EechhhcccccCC-------ceEecccc
Confidence            6688899888877765   44566666544331        1111223444 9999998887764       68889875


Q ss_pred             CCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          595 GTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       595 ~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      ++  ..++.  +...+.+++|||||++|+++.-.....            .+.|.+||.++.+++....
T Consensus       359 ~~--~~l~~--~~~~v~~~~fS~DG~~v~~S~~~~~~~------------~g~i~i~D~~T~k~~~~i~  411 (432)
T d1qksa2         359 EW--AGITE--GQPRVVQGEFNKDGTEVWFSVWNGKDQ------------ESALVVVDDKTLELKHVIK  411 (432)
T ss_dssp             HH--HTCCS--SCCEEEEEEECTTSSEEEEEEECCTTS------------CCEEEEEETTTTEEEEEEC
T ss_pred             cc--cccCC--CCCcEEEeEECCCCCEEEEEEecCCCC------------CCcEEEEECCCceEEeEec
Confidence            43  22322  445567899999999998876432210            1359999999998865443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=1.7e-16  Score=165.57  Aligned_cols=300  Identities=14%  Similarity=0.098  Sum_probs=191.7

Q ss_pred             CCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCCcceeccCCeEEEEeccCCCCcE
Q 004971          213 PYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWI  292 (721)
Q Consensus       213 ~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~ws~dg~l~~~~~~~~~g~~  292 (721)
                      .|.......+|||||++||... +            ..|.+|++.+++........                    ....
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d------------~~i~iW~~~~~~~~~~~~~~--------------------~~~~  106 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-N------------KTTQVYRVSDGSLVARLSDD--------------------SAAN  106 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-B------------SCEEEEETTTCCEEEEECC-------------------------
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-C------------CeEEEEEecccceEeeeccc--------------------cccc
Confidence            4666677779999999999864 2            46888998877644321100                    0000


Q ss_pred             EEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcc
Q 004971          293 SVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHH  372 (721)
Q Consensus       293 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~  372 (721)
                        .   .....       .......+...+..++|+| ||++|+...     .++.|++||..+++...  ....+...+
T Consensus       107 --~---~~~~~-------~~~~~~~~~~~V~~l~~s~-~~~~l~s~~-----~dg~v~i~~~~~~~~~~--~~~~h~~~v  166 (388)
T d1erja_         107 --K---DPENL-------NTSSSPSSDLYIRSVCFSP-DGKFLATGA-----EDRLIRIWDIENRKIVM--ILQGHEQDI  166 (388)
T ss_dssp             ------------------------CCCCBEEEEEECT-TSSEEEEEE-----TTSCEEEEETTTTEEEE--EECCCSSCE
T ss_pred             --c---ccccc-------ccccccCCCCCEEEEEECC-CCCcceecc-----ccccccccccccccccc--ccccccccc
Confidence              0   00000       1111122344567889999 999988754     34459999999887433  334556778


Q ss_pred             cCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecc-cCCCCc-eeCcCCCEEEEEe-CCcEEEEECCCC
Q 004971          373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFR-FDGSFP-SFSPKGDRIAFVE-FPGVYVVNSDGS  449 (721)
Q Consensus       373 ~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~-~~SpDG~~la~~~-~~~l~v~d~~~g  449 (721)
                      ..+.+++++..++.....+.         +.+++............ ...... .+.++++.|+..+ ++.|++|+..++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~---------i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~  237 (388)
T d1erja_         167 YSLDYFPSGDKLVSGSGDRT---------VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG  237 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSE---------EEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC
T ss_pred             ccccccccccccccccccee---------eeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccC
Confidence            88999999999887654443         45555544311111110 011112 3456888888774 788999999887


Q ss_pred             ceEE-Ee---------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC-------CccceEEcccCCCC
Q 004971          450 NRRQ-VY---------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD-------GVSAVRRLTTNGKN  512 (721)
Q Consensus       450 ~~~~-l~---------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~l~~~~~~  512 (721)
                      .... +.         ...+..+.|+|+++.|+..+       .++.+.+|++......       ..........+...
T Consensus       238 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (388)
T d1erja_         238 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-------LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF  310 (388)
T ss_dssp             CEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-------TTSEEEEEEC---------------CEEEEEECCSSC
T ss_pred             ccceeeccccccccCCCCCEEEEEECCCCCEEEEEE-------CCCcEEEEeccCCccccccccccccceeeecccccce
Confidence            6432 22         23567899999999999876       5788999987643210       00112222334456


Q ss_pred             CcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceee------EEccCCCEEEEEEccCCCCCCce
Q 004971          513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMC------NWSPDGEWIAFASDRDNPGSGSF  586 (721)
Q Consensus       513 ~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~------~~SpDG~~l~~~~~~~~~~~~~~  586 (721)
                      +..++|+|||++|+..+.   +..|++||+.+++.  +..+..+...+..+      .|+|||+.|+.++.++       
T Consensus       311 v~~~~~s~~~~~l~sg~~---dg~i~vwd~~~~~~--~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg-------  378 (388)
T d1erja_         311 VLSVATTQNDEYILSGSK---DRGVLFWDKKSGNP--LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC-------  378 (388)
T ss_dssp             EEEEEECGGGCEEEEEET---TSEEEEEETTTCCE--EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS-------
T ss_pred             EEEEEECCCCCEEEEEeC---CCEEEEEECCCCcE--EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCC-------
Confidence            678899999999998886   77899999999885  66666665555554      4688999999888775       


Q ss_pred             eEEEEec
Q 004971          587 EMYLIHP  593 (721)
Q Consensus       587 ~i~~~d~  593 (721)
                      .|++|++
T Consensus       379 ~I~iW~~  385 (388)
T d1erja_         379 KARIWKY  385 (388)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEee
Confidence            8999987

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=6.6e-17  Score=171.53  Aligned_cols=354  Identities=11%  Similarity=-0.005  Sum_probs=206.5

Q ss_pred             eEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEe-ccC----C-
Q 004971          197 AVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIV-ENG----G-  270 (721)
Q Consensus       197 ~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~-~~~----~-  270 (721)
                      .+..+|.++++...-.+.+......+|||||++|++++.+            ..|.+||+.+++...+.. ..+    + 
T Consensus        43 ~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~d------------g~v~~~d~~t~~~~~~~~i~~~~~~~~~  110 (432)
T d1qksa2          43 QIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRD------------GKVNMIDLWMKEPTTVAEIKIGSEARSI  110 (432)
T ss_dssp             EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETT------------SEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred             EEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCC------------CCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence            7888899888776433444444555999999999987633            368899998887544321 111    1 


Q ss_pred             --cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCC-----------CCcccCceeecCCCCEEEE
Q 004971          271 --WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPP-----------GLHAFTPATSPGNNKFIAV  337 (721)
Q Consensus       271 --~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~sp~dG~~la~  337 (721)
                        .+.|+|||+.++.... .++.+.+|......         ....+..+           ......+.+|| ||+.+++
T Consensus       111 ~~s~~~SpDG~~l~vs~~-~~~~v~i~d~~t~~---------~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~v  179 (432)
T d1qksa2         111 ETSKMEGWEDKYAIAGAY-WPPQYVIMDGETLE---------PKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIV  179 (432)
T ss_dssp             EECCSTTCTTTEEEEEEE-ETTEEEEEETTTCC---------EEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEE
T ss_pred             EEecccCCCCCEEEEEcC-CCCeEEEEeCcccc---------ceeeeccCCccccceeccCCCceeEEEECC-CCCEEEE
Confidence              4578999985543222 26778888543221         11111111           11223457788 8888777


Q ss_pred             EEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec
Q 004971          338 ATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF  417 (721)
Q Consensus       338 ~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  417 (721)
                      ....    ...++++|..+++...+.... .......++++|||++++.......        .+.+.+...... +...
T Consensus       180 s~~~----~~~i~~~d~~~~~~~~~~~i~-~g~~~~~~~~spdg~~~~va~~~~~--------~v~v~d~~~~~~-~~~~  245 (432)
T d1qksa2         180 NVKE----TGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARN--------KLVVIDTKEGKL-VAIE  245 (432)
T ss_dssp             EETT----TTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGT--------EEEEEETTTTEE-EEEE
T ss_pred             EEcc----CCeEEEEEccCCCcceEEEEc-ccCccccceECCCCCEEEEeccccc--------eEEEeecccceE-EEEe
Confidence            5432    345999999887654443322 2344567899999999988765554        344444433211 0100


Q ss_pred             c------cCCCC--ceeCcCCCEEEEE--eCCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcE
Q 004971          418 R------FDGSF--PSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEV  487 (721)
Q Consensus       418 ~------~~~~~--~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  487 (721)
                      .      .....  ..+...|...+..  .+..+.+++........ ....+....++|++..++..+       .+...
T Consensus       246 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~-~~~~v~~~~~~~~g~~~~~~s-------~p~~~  317 (432)
T d1qksa2         246 DTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPD-NAWKILDSFPALGGGSLFIKT-------HPNSQ  317 (432)
T ss_dssp             ECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTT-TBTSEEEEEECSCSCCCCEEC-------CTTCS
T ss_pred             ccCccccccCcccceecCCCCceecccccCCceEEecccccccccc-cccEEEEEEEcCCCCeEEEEe-------cCCcc
Confidence            0      00111  1223333222222  24456666554332110 023445667888888877765       34566


Q ss_pred             EEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEcc
Q 004971          488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSP  567 (721)
Q Consensus       488 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~Sp  567 (721)
                      ++|......           .+.......++ ||++.|+..+.   +..+.+|++.++.     .+..+...+.+++|||
T Consensus       318 ~lw~~~~~~-----------~~~~~~~sv~v-pDg~~la~~s~---d~~~k~w~~~~~~-----~l~~~~~~v~~~~fS~  377 (432)
T d1qksa2         318 YLYVDATLN-----------PEAEISGSVAV-FDIKAMTGDGS---DPEFKTLPIAEWA-----GITEGQPRVVQGEFNK  377 (432)
T ss_dssp             EEEEECTTC-----------SSHHHHTCEEE-EEGGGCCCSSS---CCCEEEECHHHHH-----TCCSSCCEEEEEEECT
T ss_pred             ceeecccCC-----------CCCCeeeEEEE-Eechhhccccc---CCceEeccccccc-----ccCCCCCcEEEeEECC
Confidence            677543221           11111223444 99998887776   6678888875432     3455555677899999


Q ss_pred             CCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEE
Q 004971          568 DGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF  624 (721)
Q Consensus       568 DG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~  624 (721)
                      ||++|+++.....  .....|.+||..++++...+..  .     +.++|+|++-++
T Consensus       378 DG~~v~~S~~~~~--~~~g~i~i~D~~T~k~~~~i~~--~-----~~~tp~G~~~~~  425 (432)
T d1qksa2         378 DGTEVWFSVWNGK--DQESALVVVDDKTLELKHVIKD--E-----RLVTPTGKFNVY  425 (432)
T ss_dssp             TSSEEEEEEECCT--TSCCEEEEEETTTTEEEEEECC--T-----TCCSEEEEEEHH
T ss_pred             CCCEEEEEEecCC--CCCCcEEEEECCCceEEeEecC--C-----CccCCCeeEEEE
Confidence            9999988864311  1224799999999988766532  1     355899987554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.73  E-value=2.4e-16  Score=156.64  Aligned_cols=245  Identities=18%  Similarity=0.211  Sum_probs=164.9

Q ss_pred             ceeecCC--CCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCccee
Q 004971          325 PATSPGN--NKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQL  402 (721)
Q Consensus       325 ~~~sp~d--G~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l  402 (721)
                      ..+|| |  |++|+|....      .||++|+++++.++|+..   ......+.|||||++|+|........   ....+
T Consensus         4 ~~~sP-di~G~~v~f~~~~------dl~~~d~~~g~~~~Lt~~---~~~~~~p~~SPDG~~iaf~~~~~~~~---~~~~i   70 (281)
T d1k32a2           4 LLLNP-DIHGDRIIFVCCD------DLWEHDLKSGSTRKIVSN---LGVINNARFFPDGRKIAIRVMRGSSL---NTADL   70 (281)
T ss_dssp             CCEEE-EEETTEEEEEETT------EEEEEETTTCCEEEEECS---SSEEEEEEECTTSSEEEEEEEESTTC---CEEEE
T ss_pred             cccCC-CCCCCEEEEEeCC------cEEEEECCCCCEEEEecC---CCcccCEEECCCCCEEEEEEeeCCCC---CceEE
Confidence            35789 9  9999997532      399999999998888643   45567899999999999988765421   11458


Q ss_pred             EEEeccCCC-Ccceecc-------cCCCCceeCcCCCEEEEEe-------CCcEEEEECCCCceEEEeecCceeeEEcCC
Q 004971          403 LLENIKSPL-PDISLFR-------FDGSFPSFSPKGDRIAFVE-------FPGVYVVNSDGSNRRQVYFKNAFSTVWDPV  467 (721)
Q Consensus       403 ~~~~~~~~~-~~~~~~~-------~~~~~~~~SpDG~~la~~~-------~~~l~v~d~~~g~~~~l~~~~~~~~~~spd  467 (721)
                      ++.+..++. ..++...       .....+.|+|||+.|+|..       ...++.++.+++..+.... ......|.++
T Consensus        71 ~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  149 (281)
T d1k32a2          71 YFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL-GPATHILFAD  149 (281)
T ss_dssp             EEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS-CSCSEEEEET
T ss_pred             EEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecC-CccceeeecC
Confidence            888876652 2222111       1233468999999999982       2346777777776655543 3344567777


Q ss_pred             CCeEEEEecCCCCC-----CCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEEC
Q 004971          468 REAVVYTSGGPEFA-----SESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA  542 (721)
Q Consensus       468 g~~la~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~  542 (721)
                      +..+++........     .......+.....  .    ....++........+.++++  .+++.....+..+||++|+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~  221 (281)
T d1k32a2         150 GRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS--G----AFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDL  221 (281)
T ss_dssp             TEEEEEESCSCCTTSTTCCSTTCCEEEEEEET--T----EEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEET
T ss_pred             CCeEEEeeccccceeeeeccCCcceeeeeccc--c----ceeeccCCccccceeeeecc--ccceecccccccceEEEeC
Confidence            77777765322110     1111222222222  1    44445555555666777765  6778887778889999999


Q ss_pred             CCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971          543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ  603 (721)
Q Consensus       543 ~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  603 (721)
                      ++++   +++++..... ....|||||++|+|....        +||++|+++++.+++..
T Consensus       222 ~g~~---~~~lt~~~~~-~~~~~SpDG~~I~f~~~~--------~l~~~d~~~g~~~~i~~  270 (281)
T d1k32a2         222 DGKD---LRKHTSFTDY-YPRHLNTDGRRILFSKGG--------SIYIFNPDTEKIEKIEI  270 (281)
T ss_dssp             TSCS---CEECCCCCSS-CEEEEEESSSCEEEEETT--------EEEEECTTTCCEEECCC
T ss_pred             CCCc---eEEeecCCCc-ccccCcCCCCEEEEEeCC--------EEEEEECCCCCEEEecc
Confidence            9888   7778765432 346799999999997753        79999999999988853

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.73  E-value=3.1e-15  Score=158.52  Aligned_cols=362  Identities=12%  Similarity=0.079  Sum_probs=181.8

Q ss_pred             cCCEEEEEecCCCCCCCCCccceEEEEeCCCcceE-eecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEE
Q 004971          175 SGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTR-RLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYI  253 (721)
Q Consensus       175 dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~-~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~  253 (721)
                      |.+.++++...+.        ..|..+|+.+++.. .+ +.+......+|||||++|+.++.+            ..|.+
T Consensus        29 d~~~~~~V~~~~d--------g~v~vwD~~t~~~~~~l-~~g~~~~~vafSPDGk~l~~~~~d------------~~v~v   87 (426)
T d1hzua2          29 DLPNLFSVTLRDA--------GQIALVDGDSKKIVKVI-DTGYAVHISRMSASGRYLLVIGRD------------ARIDM   87 (426)
T ss_dssp             CGGGEEEEEETTT--------TEEEEEETTTCSEEEEE-ECCSSEEEEEECTTSCEEEEEETT------------SEEEE
T ss_pred             CCCeEEEEEEcCC--------CEEEEEECCCCcEEEEE-eCCCCeeEEEECCCCCEEEEEeCC------------CCEEE
Confidence            5555665655532        27778888888764 45 333344556999999999886532            36889


Q ss_pred             EEcCCCceeEEEe-ccC----C---cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCc
Q 004971          254 FLTRDGTQRVKIV-ENG----G---WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTP  325 (721)
Q Consensus       254 ~d~~~g~~~~l~~-~~~----~---~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (721)
                      ||+.+++...+.. ..+    +   .+.|+|||+.++... ..++.+.+|......         ....+..+...+...
T Consensus        88 wd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~-~~~~~v~i~d~~~~~---------~~~~~~~~~~~~~~~  157 (426)
T d1hzua2          88 IDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA-YWPPQFAIMDGETLE---------PKQIVSTRGMTVDTQ  157 (426)
T ss_dssp             EETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEE-EESSEEEEEETTTCC---------EEEEEECCEECSSSC
T ss_pred             EEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEee-cCCCeEEEEcCCccc---------eeEEeeccCCCccce
Confidence            9999888554331 111    1   458999998544322 225666666322211         222223332233344


Q ss_pred             eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEE
Q 004971          326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLE  405 (721)
Q Consensus       326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~  405 (721)
                      .+.+ ++...+......   ...++..+..++....+..              .++..+                  .+.
T Consensus       158 ~~~~-~~~~~~i~~s~d---~~~~~~~~~~~~~i~~~~~--------------~~~~~~------------------~~~  201 (426)
T d1hzua2         158 TYHP-EPRVAAIIASHE---HPEFIVNVKETGKVLLVNY--------------KDIDNL------------------TVT  201 (426)
T ss_dssp             CEES-CCCEEEEEECSS---SSEEEEEETTTTEEEEEEC--------------SSSSSC------------------EEE
T ss_pred             eecC-CCceeEEEECCC---CCEEEEecCCCCeEEEEEe--------------ccccce------------------eeE
Confidence            5555 554333322111   1112222222221100000              000000                  000


Q ss_pred             eccCCCCcceecccCCCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEee-----cCceeeEEcCCCCeEEEEecCC
Q 004971          406 NIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVYF-----KNAFSTVWDPVREAVVYTSGGP  478 (721)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~~-----~~~~~~~~spdg~~la~~~~~~  478 (721)
                      .+..+        .....+.++|+|++++...  ...+.+++...++......     .......+..++...++.... 
T Consensus       202 ~~~~~--------~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  272 (426)
T d1hzua2         202 SIGAA--------PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH-  272 (426)
T ss_dssp             EEECC--------SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC-
T ss_pred             EeccC--------CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc-
Confidence            00000        0011245666666555552  3445566665555433320     111122222222221111100 


Q ss_pred             CCCCCCCcEEEEEEEccCC--CCccceEEcccCCCCCcceEEccCCCEEEEEEeeC----CceeEEEEECCCCcccc-eE
Q 004971          479 EFASESSEVDIISINVDDV--DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT----GYKNLYIMDAEGGEGYG-LH  551 (721)
Q Consensus       479 ~~~~~~~~~~i~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~----g~~~l~~~d~~~g~~~~-~~  551 (721)
                         ..++.+.++.......  ........+..+...+..++|||||++|++.....    .+..|.+||+++++... +.
T Consensus       273 ---~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~  349 (426)
T d1hzua2         273 ---LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL  349 (426)
T ss_dssp             ---TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE
T ss_pred             ---CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEe
Confidence               1122333322221110  00124455666666788899999999999753211    14579999999887411 11


Q ss_pred             ------ECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEE
Q 004971          552 ------RLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVF  624 (721)
Q Consensus       552 ------~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~  624 (721)
                            .+..+...+.+++|||||++|+++.....  .....|.+||..+++....... .      ..++|+|++-++
T Consensus       350 ~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~--~~~~~i~v~D~~T~k~~~~i~~-~------~~~tp~Gk~~~~  419 (426)
T d1hzua2         350 PIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGK--NDSSALVVVDDKTLKLKAVVKD-P------RLITPTGKFNVY  419 (426)
T ss_dssp             CHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCT--TSCCEEEEEETTTTEEEEEECC-T------TCCSEEEEEEHH
T ss_pred             ccchhcccCCCCccEEEEEECCCCCEEEEEEecCC--CCCCeEEEEECCCCeEEEEECC-C------CccCCCceEeEe
Confidence                  12334445678999999999988653210  1334799999999987766542 1      255899998654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=1.7e-15  Score=155.85  Aligned_cols=299  Identities=13%  Similarity=0.124  Sum_probs=185.3

Q ss_pred             eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCC-CCCcceeEE
Q 004971          326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR-EDGNNQLLL  404 (721)
Q Consensus       326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~-~~~~~~l~~  404 (721)
                      +.+| ||+++++.....+.....+++||.++++......    .+....++|||||++|++......... ......+.+
T Consensus         8 a~sp-dg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~----~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v   82 (355)
T d2bbkh_           8 APAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID----GGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV   82 (355)
T ss_dssp             CCCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE----ECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             eeCC-CCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE----CCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence            4589 9999977654444556679999999998543322    123335899999999988664322100 000024666


Q ss_pred             EeccCCCCc--ce-------ecccCCCCceeCcCCCEEEEEe---CCcEEEEECCCCceEEE-e---------ecCceee
Q 004971          405 ENIKSPLPD--IS-------LFRFDGSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNRRQV-Y---------FKNAFST  462 (721)
Q Consensus       405 ~~~~~~~~~--~~-------~~~~~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~~~l-~---------~~~~~~~  462 (721)
                      +++.++...  +.       ........++|+|||+++++..   ...+.+++..+++.... .         .+....+
T Consensus        83 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (355)
T d2bbkh_          83 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF  162 (355)
T ss_dssp             ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEE
T ss_pred             EECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceE
Confidence            666554211  11       0111223468999999998873   56788999988875332 2         2334567


Q ss_pred             EEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEEC
Q 004971          463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDA  542 (721)
Q Consensus       463 ~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~  542 (721)
                      .+++||+.+++...      ......+.......          .........+.+++++..+++.+.   +..+++|++
T Consensus       163 ~~~~dg~~~~v~~~------~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~  223 (355)
T d2bbkh_         163 MHCRDGSLAKVAFG------TEGTPEITHTEVFH----------PEDEFLINHPAYSQKAGRLVWPTY---TGKIHQIDL  223 (355)
T ss_dssp             EEETTSCEEEEECC------SSSCCEEEECCCCS----------CTTSCBCSCCEEETTTTEEEEEBT---TSEEEEEEC
T ss_pred             EEcCCCCEEEEEec------CCCeEEEEeccccc----------ceecceeeeccccCCCCeEEEecC---CCeEEEEec
Confidence            88999998887652      22333332221111          011123345688889999988876   678999999


Q ss_pred             CCCcccceEECcCC----------CcCceeeEEccCCCEEEEEEccCCC---CCCceeEEEEecCCCceEEeeecCCCCC
Q 004971          543 EGGEGYGLHRLTEG----------PWSDTMCNWSPDGEWIAFASDRDNP---GSGSFEMYLIHPNGTGLRKLIQSGSAGR  609 (721)
Q Consensus       543 ~~g~~~~~~~l~~~----------~~~~~~~~~SpDG~~l~~~~~~~~~---~~~~~~i~~~d~~~~~~~~l~~~~~~~~  609 (721)
                      .+++...+......          ......++++||++.+++.......   ......|++||+.+++......  ....
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~--~~~~  301 (355)
T d2bbkh_         224 SSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE--MGHE  301 (355)
T ss_dssp             TTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE--EEEE
T ss_pred             CCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec--CCCC
Confidence            88763111111111          1122458899999999887765321   1234689999999887655443  2345


Q ss_pred             cCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EEeccCC
Q 004971          610 ANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLTQNS  665 (721)
Q Consensus       610 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt~~~  665 (721)
                      +..++|||||+.+++.+....               ..|++||+++++. +.|...+
T Consensus       302 ~~~~a~spDG~~~l~v~~~~d---------------~~i~v~D~~tg~~~~~i~~~G  343 (355)
T d2bbkh_         302 IDSINVSQDEKPLLYALSTGD---------------KTLYIHDAESGEELRSVNQLG  343 (355)
T ss_dssp             ECEEEECCSSSCEEEEEETTT---------------TEEEEEETTTCCEEEEECCCC
T ss_pred             EEEEEEcCCCCeEEEEEECCC---------------CEEEEEECCCCCEEEEEeCcC
Confidence            678999999997666555432               2599999988875 5665543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.72  E-value=4.6e-16  Score=156.09  Aligned_cols=282  Identities=16%  Similarity=0.026  Sum_probs=175.4

Q ss_pred             eecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEecc-CC---cceeccCCeEEEEec
Q 004971          210 RLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVEN-GG---WPCWVDESTLFFHRK  285 (721)
Q Consensus       210 ~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~-~~---~~~ws~dg~l~~~~~  285 (721)
                      .+..|.......+|||||++|+.++.+            ..|.+|++.+++..+..... ..   ...|+|||+++..  
T Consensus         7 ~~~GH~~~V~~l~~s~dg~~l~s~s~D------------g~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~--   72 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADGKTLFSADAE------------GHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTV--   72 (299)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETT------------SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEE--
T ss_pred             EcCCCCCCcEEEEECCCCCEEEEEcCC------------CeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecc--
Confidence            345566666667999999999987644            35889999988866554221 22   3489999987663  


Q ss_pred             cCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc
Q 004971          286 SEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF  365 (721)
Q Consensus       286 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~  365 (721)
                      .. ++.+.+|........      ............+..+.++| +|+.++....      ..+.+|+..  +...+.. 
T Consensus        73 ~~-d~~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~s~-~g~~~~~~~~------~~i~~~~~~--~~~~~~~-  135 (299)
T d1nr0a2          73 SW-DDHLKVVPAGGSGVD------SSKAVANKLSSQPLGLAVSA-DGDIAVAACY------KHIAIYSHG--KLTEVPI-  135 (299)
T ss_dssp             ET-TTEEEEECSSSSSSC------TTSCCEEECSSCEEEEEECT-TSSCEEEEES------SEEEEEETT--EEEEEEC-
T ss_pred             cc-eeeEEEeccCCcccc------cccccccccccccccccccc-cccccccccc------ccccccccc--ccccccc-
Confidence            22 577777743222110      00111111223445678899 9987765432      237777643  1111110 


Q ss_pred             cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEE
Q 004971          366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVV  444 (721)
Q Consensus       366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~  444 (721)
                         ....                                                 ..++|+||++.|+... ++.|.+|
T Consensus       136 ---~~~~-------------------------------------------------~~~~~s~~~~~l~~g~~dg~i~~~  163 (299)
T d1nr0a2         136 ---SYNS-------------------------------------------------SCVALSNDKQFVAVGGQDSKVHVY  163 (299)
T ss_dssp             ---SSCE-------------------------------------------------EEEEECTTSCEEEEEETTSEEEEE
T ss_pred             ---cccc-------------------------------------------------cccccccccccccccccccccccc
Confidence               0001                                                 1135667777766653 6678888


Q ss_pred             ECCCCceEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc
Q 004971          445 NSDGSNRRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP  520 (721)
Q Consensus       445 d~~~g~~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp  520 (721)
                      |+.+++...+.    ...+..++|+|++++|+..+       .++.+.+|++.....  ......+..+...+..++|+|
T Consensus       164 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~d~~i~~~~~~~~~~--~~~~~~~~~h~~~v~~l~~s~  234 (299)
T d1nr0a2         164 KLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD-------QSRKVIPYSVANNFE--LAHTNSWTFHTAKVACVSWSP  234 (299)
T ss_dssp             EEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE-------TTSCEEEEEGGGTTE--ESCCCCCCCCSSCEEEEEECT
T ss_pred             ccccccccccccccccccccccccccccccccccc-------ccccccccccccccc--ccccccccccccccccccccc
Confidence            88776654433    45678899999999998876       467888887654321  011122333445677789999


Q ss_pred             CCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEec
Q 004971          521 DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       521 Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                      +|++|+..+.   +..|++||+.++..........+........+++++++|+.++.++       .|.+||+
T Consensus       235 ~~~~l~sgs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~-------~i~iWdl  297 (299)
T d1nr0a2         235 DNVRLATGSL---DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS-------NIKFWNV  297 (299)
T ss_dssp             TSSEEEEEET---TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTS-------CEEEEEC
T ss_pred             cccceEEEcC---CCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCC-------EEEEEec
Confidence            9999998886   6789999998876433333333333223344557788898888775       8999997

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.71  E-value=1.7e-14  Score=149.54  Aligned_cols=309  Identities=10%  Similarity=0.016  Sum_probs=185.7

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCC-CCCc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR-EDGN  399 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~-~~~~  399 (721)
                      .....++|| ||+++++...........+++||.++++....  ..  ......++|||||++|++......... ....
T Consensus        22 p~~~~a~sp-dg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~--~~--~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~   96 (373)
T d2madh_          22 PTNDEAPGA-DGRRSYINLPAHHSAIIQQWVLDAGSGSILGH--VN--GGFLPNPVAAHSGSEFALASTSFSRIAKGKRT   96 (373)
T ss_pred             CccccccCC-CCCEEEEEcccccCCCceEEEEECCCCCEEEE--Ee--CCCCccEEEcCCCCEEEEEeecCCcccccccc
Confidence            456788999 99999876443334456699999999985432  22  223336899999999999776543210 0011


Q ss_pred             ceeEEEeccCCCCc--c-------eecccCCCCceeCcCCCEEEEEe---CCcEEEEECCCCceEEEeecCceeeEEcCC
Q 004971          400 NQLLLENIKSPLPD--I-------SLFRFDGSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNRRQVYFKNAFSTVWDPV  467 (721)
Q Consensus       400 ~~l~~~~~~~~~~~--~-------~~~~~~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~~~l~~~~~~~~~~spd  467 (721)
                      ..+.+++..+....  +       .........+.|++||+.+++..   ...+.+++....+.... ......+.++|+
T Consensus        97 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~  175 (373)
T d2madh_          97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL-LSSPTCYHIHPG  175 (373)
T ss_pred             eEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE-eccceeEEEecC
Confidence            34566666544211  0       11111234568999999887762   45677888776654332 234567889999


Q ss_pred             CCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC----C--CCCcceEEccCCCEEEEEEeeCCceeEEEEE
Q 004971          468 REAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN----G--KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMD  541 (721)
Q Consensus       468 g~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~----~--~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d  541 (721)
                      |+.+++...      .++.+.+|......     ........    .  .......+++++..++...    ...+++++
T Consensus       176 g~~~~v~~~------~dg~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~  240 (373)
T d2madh_         176 APSTFYLLC------AQGGLAKTDHAGGA-----AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY----SGKILQAD  240 (373)
T ss_pred             CCcEEEEEc------CCCeEEEEEcCCce-----eeEEEeeeccccCccceeeeEEECCCceEEEecC----CceEEEEE
Confidence            999887652      45677777655432     11111111    1  1123345666665554333    45677777


Q ss_pred             CCCCcccceEECcC----------CCcCceeeEEccCCCEEEEEEccCCC---CCCceeEEEEecCCCceEEeeecCCCC
Q 004971          542 AEGGEGYGLHRLTE----------GPWSDTMCNWSPDGEWIAFASDRDNP---GSGSFEMYLIHPNGTGLRKLIQSGSAG  608 (721)
Q Consensus       542 ~~~g~~~~~~~l~~----------~~~~~~~~~~SpDG~~l~~~~~~~~~---~~~~~~i~~~d~~~~~~~~l~~~~~~~  608 (721)
                      ..++.......+..          ........+++||++.+++.......   ......+++||..+++......  ...
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~--~~~  318 (373)
T d2madh_         241 ISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--LGH  318 (373)
T ss_pred             cCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec--CCC
Confidence            76654211111111          11223457899999988776544211   1123478999999987666544  455


Q ss_pred             CcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EEeccCCCC
Q 004971          609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLTQNSFE  667 (721)
Q Consensus       609 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt~~~~~  667 (721)
                      ....++|||||+++++.......               .|++||+.+++. +.|..++..
T Consensus       319 ~~~~~a~spDG~~~l~vt~~~d~---------------~v~v~D~~tg~~~~~~~~~g~~  363 (373)
T d2madh_         319 DVDAISVAQDGGPDLYALSAGTE---------------VLHIYDAGAGDQDQSTVELGSG  363 (373)
T ss_pred             CeeEEEECCCCCEEEEEEeCCCC---------------eEEEEECCCCCEEEEECCCCCC
Confidence            67789999999987665544432               499999998876 566554433

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=8.6e-16  Score=154.23  Aligned_cols=270  Identities=11%  Similarity=0.055  Sum_probs=188.0

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      ..+|+|+++++++  ...|+.+.||++....         ....+..+...+..+.++| ++..++.....     ..+.
T Consensus        22 ~l~~sp~~~~l~s--~s~Dg~i~iWd~~~~~---------~~~~~~~h~~~V~~~~~~~-~~~~~~~~~~~-----~~~~   84 (317)
T d1vyhc1          22 RVIFHPVFSVMVS--ASEDATIKVWDYETGD---------FERTLKGHTDSVQDISFDH-SGKLLASCSAD-----MTIK   84 (317)
T ss_dssp             EEEECSSSSEEEE--EESSSCEEEEETTTCC---------CCEEECCCSSCEEEEEECT-TSSEEEEEETT-----SCCC
T ss_pred             EEEEcCCCCEEEE--EeCCCeEEEEECCCCC---------EEEEEeCCCCcEEEEeeec-ccccccccccc-----cccc
Confidence            4589999988774  3347999999653322         4555666666778899999 99988875432     2367


Q ss_pred             EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--ceecccCCCCceeCc
Q 004971          351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSFSP  428 (721)
Q Consensus       351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~Sp  428 (721)
                      .++....+....  ...+........++|+++.++....++.         +.++++..+...  +.........++|+|
T Consensus        85 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (317)
T d1vyhc1          85 LWDFQGFECIRT--MHGHDHNVSSVSIMPNGDHIVSASRDKT---------IKMWEVQTGYCVKTFTGHREWVRMVRPNQ  153 (317)
T ss_dssp             EEETTSSCEEEC--CCCCSSCEEEEEECSSSSEEEEEETTSE---------EEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred             cccccccccccc--cccccccceeeeccCCCceEEeeccCcc---------eeEeecccceeeeEEccCCCcceeeeccc
Confidence            788777663332  3344566777899999999987654443         455555544211  111122234468999


Q ss_pred             CCCEEEEEe-CCcEEEEECCCCceEEEe---ecCceeeEEcCCCC--------------------eEEEEecCCCCCCCC
Q 004971          429 KGDRIAFVE-FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVRE--------------------AVVYTSGGPEFASES  484 (721)
Q Consensus       429 DG~~la~~~-~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~--------------------~la~~~~~~~~~~~~  484 (721)
                      +++.|+..+ ++.+.+|++..++.....   ...+..+.|+|++.                    .++..+       .+
T Consensus       154 ~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d  226 (317)
T d1vyhc1         154 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-------RD  226 (317)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-------TT
T ss_pred             CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc-------CC
Confidence            999988874 788999999887754433   33455666766654                    333332       45


Q ss_pred             CcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeE
Q 004971          485 SEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCN  564 (721)
Q Consensus       485 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~  564 (721)
                      +.+.+|.+...     .....+..+...+..++|+|+|++|+..+.   +..|++||+.+++.  +..+..+...+..++
T Consensus       227 ~~i~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~--~~~~~~h~~~V~~~~  296 (317)
T d1vyhc1         227 KTIKMWDVSTG-----MCLMTLVGHDNWVRGVLFHSGGKFILSCAD---DKTLRVWDYKNKRC--MKTLNAHEHFVTSLD  296 (317)
T ss_dssp             SEEEEEETTTT-----EEEEEEECCSSCEEEEEECSSSSCEEEEET---TTEEEEECCTTSCC--CEEEECCSSCEEEEE
T ss_pred             CEEEEEECCCC-----cEEEEEeCCCCCEEEEEECCCCCEEEEEEC---CCeEEEEECCCCcE--EEEEcCCCCCEEEEE
Confidence            67777765432     245566666667888999999999998886   77899999998875  666766777789999


Q ss_pred             EccCCCEEEEEEccCCCCCCceeEEEEe
Q 004971          565 WSPDGEWIAFASDRDNPGSGSFEMYLIH  592 (721)
Q Consensus       565 ~SpDG~~l~~~~~~~~~~~~~~~i~~~d  592 (721)
                      |+|||++|+.++.++       .|++||
T Consensus       297 ~s~~~~~l~s~s~Dg-------~i~iWd  317 (317)
T d1vyhc1         297 FHKTAPYVVTGSVDQ-------TVKVWE  317 (317)
T ss_dssp             ECSSSSCEEEEETTS-------EEEEEC
T ss_pred             EcCCCCEEEEEeCCC-------eEEEeC
Confidence            999999999988875       799886

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.70  E-value=9e-16  Score=159.46  Aligned_cols=261  Identities=8%  Similarity=-0.003  Sum_probs=164.0

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      ..+|+|||++++.  ...++.+.||......-.       ....+..|...+..++|+| ++++|+...     .+..|+
T Consensus        12 ~~~~s~dg~~la~--~~~~~~i~iw~~~~~~~~-------~~~~l~gH~~~V~~l~fsp-~~~~l~s~s-----~D~~i~   76 (371)
T d1k8kc_          12 CHAWNKDRTQIAI--CPNNHEVHIYEKSGNKWV-------QVHELKEHNGQVTGVDWAP-DSNRIVTCG-----TDRNAY   76 (371)
T ss_dssp             EEEECTTSSEEEE--ECSSSEEEEEEEETTEEE-------EEEEEECCSSCEEEEEEET-TTTEEEEEE-----TTSCEE
T ss_pred             EEEECCCCCEEEE--EeCCCEEEEEECCCCCEE-------EEEEecCCCCCEEEEEECC-CCCEEEEEE-----CCCeEE
Confidence            4589999987663  333788999965432211       3344556666788999999 999988754     345699


Q ss_pred             EEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee----cccCCCCcee
Q 004971          351 LFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL----FRFDGSFPSF  426 (721)
Q Consensus       351 l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~  426 (721)
                      +||+.+++.........+...+..+.|+|+++.|+....++.       ..+|..+..........    .......++|
T Consensus        77 vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~-------i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~  149 (371)
T d1k8kc_          77 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV-------ISICYFEQENDWWVCKHIKKPIRSTVLSLDW  149 (371)
T ss_dssp             EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSS-------EEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred             EEeecccccccccccccccccccccccccccccceeecccCc-------ceeeeeecccccccccccccccccccccccc
Confidence            999988876555544555667888999999999988765554       34444332221111111    1112234678


Q ss_pred             CcCCCEEEEEe-CCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE
Q 004971          427 SPKGDRIAFVE-FPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR  505 (721)
Q Consensus       427 SpDG~~la~~~-~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  505 (721)
                      +|||++|+..+ ++.+.+|++..+............ .-.+.+                                .....
T Consensus       150 ~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~-~~~~~~--------------------------------~~~~~  196 (371)
T d1k8kc_         150 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG-SKMPFG--------------------------------ELMFE  196 (371)
T ss_dssp             CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB-SCCCTT--------------------------------CEEEE
T ss_pred             cccccceeccccCcEEEEEeeccCcccccccccccc-ccccce--------------------------------eeeee
Confidence            88888887764 677888887654321110000000 000000                                01222


Q ss_pred             cccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCc
Q 004971          506 LTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGS  585 (721)
Q Consensus       506 l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~  585 (721)
                      ...+...+..++|+|||++|++.+.   +..|.+||+.++..  +..+..+...+..++|+|||+.|+.+.+.      .
T Consensus       197 ~~~~~~~v~~~~~s~~g~~l~s~~~---d~~i~iwd~~~~~~--~~~~~~~~~~v~s~~fs~d~~~la~g~d~------~  265 (371)
T d1k8kc_         197 SSSSCGWVHGVCFSANGSRVAWVSH---DSTVCLADADKKMA--VATLASETLPLLAVTFITESSLVAAGHDC------F  265 (371)
T ss_dssp             CCCCSSCEEEEEECSSSSEEEEEET---TTEEEEEEGGGTTE--EEEEECSSCCEEEEEEEETTEEEEEETTS------S
T ss_pred             ccCccCcEEEEEeeccccccccccc---CCcceEEeeecccc--eeeeecccccceeeeecCCCCEEEEEcCC------c
Confidence            3334456677899999999998886   77899999988775  56666666667889999999877654432      2


Q ss_pred             eeEEEEecCCCc
Q 004971          586 FEMYLIHPNGTG  597 (721)
Q Consensus       586 ~~i~~~d~~~~~  597 (721)
                      ..++.|+...+.
T Consensus       266 ~~~~~~~~~~~~  277 (371)
T d1k8kc_         266 PVLFTYDSAAGK  277 (371)
T ss_dssp             CEEEEEETTTTE
T ss_pred             eEEEEeeCCCce
Confidence            356777755443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.69  E-value=6.2e-16  Score=153.62  Aligned_cols=252  Identities=14%  Similarity=0.172  Sum_probs=164.5

Q ss_pred             CCceEEEEeecCCCcceeEEeccCCCCCCCCceeeeccceeeeccccCCCCCchhhhhhhccccccCCCCCCCCCCCCCc
Q 004971           28 SRSSIIFTTLGRSDYAFDIYTLPISDRPTTANEIKITDGESVNFNGHFPSPSSPFLSFLLRNQTLIQSPGPQDSRDPPPL  107 (721)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~spdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (721)
                      +++.++|+      ..++||++++++    ++.++||.+.+.+.+|+|||||+                           
T Consensus        11 ~G~~v~f~------~~~dl~~~d~~~----g~~~~Lt~~~~~~~~p~~SPDG~---------------------------   53 (281)
T d1k32a2          11 HGDRIIFV------CCDDLWEHDLKS----GSTRKIVSNLGVINNARFFPDGR---------------------------   53 (281)
T ss_dssp             ETTEEEEE------ETTEEEEEETTT----CCEEEEECSSSEEEEEEECTTSS---------------------------
T ss_pred             CCCEEEEE------eCCcEEEEECCC----CCEEEEecCCCcccCEEECCCCC---------------------------
Confidence            47899999      667999999988    99999999999999999999999                           


Q ss_pred             eEEEEeeecCC---ceeEEeeeecCcccccccchhhh-ccccccccceeeccccccccCCceeeeeecccccCCEEEEEe
Q 004971          108 QLIYVTERNGT---SNIYYDAVYYDTRRNTRSRTALE-QHGAEVSTRVQVPLLDLNEVNGGVISMKDKPILSGEYLIYVS  183 (721)
Q Consensus       108 ~~~~~~~~~g~---~~v~~~~~~~g~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sP~~dg~~l~~~~  183 (721)
                      +|||+..+++.   .+||+++..+|+    .++  |+ ............       ..+.|     +|  ||+.|+|..
T Consensus        54 ~iaf~~~~~~~~~~~~i~~~~~~~g~----~~~--lt~~~~~~~~~~~~~-------~~~~~-----sp--dg~~l~~~~  113 (281)
T d1k32a2          54 KIAIRVMRGSSLNTADLYFYNGENGE----IKR--ITYFSGKSTGRRMFT-------DVAGF-----DP--DGNLIISTD  113 (281)
T ss_dssp             EEEEEEEESTTCCEEEEEEEETTTTE----EEE--CCCCCEEEETTEECS-------EEEEE-----CT--TCCEEEEEC
T ss_pred             EEEEEEeeCCCCCceEEEEEEecCCc----eEE--eeecCCCccCccccc-------ccccc-----CC--CCCEEEEEE
Confidence            99999876653   469999988877    666  76 321100000000       01157     99  999999987


Q ss_pred             cCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCC-CCCCcccceeeeeEEEEEcCCCcee
Q 004971          184 THENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGN-KGWDGEVEMLSTDIYIFLTRDGTQR  262 (721)
Q Consensus       184 ~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~-~~w~~~~~~~~~~i~~~d~~~g~~~  262 (721)
                      .......    ...++.++.+++..+......   ..+.++++|..+++..... ..+..+..+. ...+......+...
T Consensus       114 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  185 (281)
T d1k32a2         114 AMQPFSS----MTCLYRVENDGINFVPLNLGP---ATHILFADGRRVIGRNTFELPHWKGYRGGT-RGKIWIEVNSGAFK  185 (281)
T ss_dssp             TTSSSTT----CCEEEEEEGGGTEEEECCSCS---CSEEEEETTEEEEEESCSCCTTSTTCCSTT-CCEEEEEEETTEEE
T ss_pred             ccCCCcc----ceeeeeecCCCceeEEecCCc---cceeeecCCCeEEEeeccccceeeeeccCC-cceeeeecccccee
Confidence            6644332    246788888887776663332   2346777777777654432 2232222222 22333334344545


Q ss_pred             EEEeccCC--cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEe
Q 004971          263 VKIVENGG--WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATR  340 (721)
Q Consensus       263 ~l~~~~~~--~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~  340 (721)
                      .++.....  .+.|+++ .+++.  .+..+..+||.+...+ .       ..++++... ......||| ||++|+|...
T Consensus       186 ~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~l~~~d~~g-~-------~~~~lt~~~-~~~~~~~Sp-DG~~I~f~~~  252 (281)
T d1k32a2         186 KIVDMSTHVSSPVIVGH-RIYFI--TDIDGFGQIYSTDLDG-K-------DLRKHTSFT-DYYPRHLNT-DGRRILFSKG  252 (281)
T ss_dssp             EEECCSSCCEEEEEETT-EEEEE--ECTTSSCEEEEEETTS-C-------SCEECCCCC-SSCEEEEEE-SSSCEEEEET
T ss_pred             eccCCccccceeeeecc-cccee--cccccccceEEEeCCC-C-------ceEEeecCC-CcccccCcC-CCCEEEEEeC
Confidence            55433332  5677777 44442  3446777899555544 3       677777653 223457999 9999999542


Q ss_pred             cCCCCeeeEEEEECCCCceEEee
Q 004971          341 RPTSSYRHIELFDLVKNKFIELT  363 (721)
Q Consensus       341 ~~g~~~~~l~l~dl~tg~~~~l~  363 (721)
                            ..|+++|+++++.++|.
T Consensus       253 ------~~l~~~d~~~g~~~~i~  269 (281)
T d1k32a2         253 ------GSIYIFNPDTEKIEKIE  269 (281)
T ss_dssp             ------TEEEEECTTTCCEEECC
T ss_pred             ------CEEEEEECCCCCEEEec
Confidence                  24999999999987775

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.69  E-value=1.1e-14  Score=145.64  Aligned_cols=248  Identities=15%  Similarity=0.135  Sum_probs=165.1

Q ss_pred             CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCC
Q 004971          319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDG  398 (721)
Q Consensus       319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~  398 (721)
                      +.....++||| ||++|+.....    +..|.+||+.+++.....  .. ......++|+++++.+++......      
T Consensus        31 g~~p~~va~sp-dG~~l~v~~~~----~~~i~v~d~~t~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~------   96 (301)
T d1l0qa2          31 GSNPMGAVISP-DGTKVYVANAH----SNDVSIIDTATNNVIATV--PA-GSSPQGVAVSPDGKQVYVTNMASS------   96 (301)
T ss_dssp             SSSEEEEEECT-TSSEEEEEEGG----GTEEEEEETTTTEEEEEE--EC-SSSEEEEEECTTSSEEEEEETTTT------
T ss_pred             CCCceEEEEeC-CCCEEEEEECC----CCEEEEEECCCCceeeee--ec-cccccccccccccccccccccccc------
Confidence            33456789999 99998765433    345999999998754332  21 234567899999999887654432      


Q ss_pred             cceeEEEeccCCCCc-ceecccCCCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEE
Q 004971          399 NNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVY  473 (721)
Q Consensus       399 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~  473 (721)
                        .+.+.+....... ............++|||+.+++..  ...+.+++..++......  ...+..+.++||++.+++
T Consensus        97 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (301)
T d1l0qa2          97 --TLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYV  174 (301)
T ss_dssp             --EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEE
T ss_pred             --eeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceee
Confidence              3555555443211 111112233478999999988774  567899999888755443  445678899999999998


Q ss_pred             EecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEEC
Q 004971          474 TSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRL  553 (721)
Q Consensus       474 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l  553 (721)
                      ...      ......++.  ....    ..............++|+++|+.+++.........|++||+.+++.  +..+
T Consensus       175 ~~~------~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~--~~~~  240 (301)
T d1l0qa2         175 ANF------DSMSISVID--TVTN----SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI--TARI  240 (301)
T ss_dssp             EET------TTTEEEEEE--TTTT----EEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE--EEEE
T ss_pred             ecc------ccccccccc--ccce----eeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeE--EEEE
Confidence            863      223333332  3222    3333333333556789999999998887655566899999998874  4444


Q ss_pred             cCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971          554 TEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ  603 (721)
Q Consensus       554 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  603 (721)
                      ..+. ....++|||||++|+++....      ..|.+||+++++......
T Consensus       241 ~~~~-~~~~va~spdg~~l~va~~~~------~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         241 PVGP-DPAGIAVTPDGKKVYVALSFC------NTVSVIDTATNTITATMA  283 (301)
T ss_dssp             ECCS-SEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEE
T ss_pred             cCCC-CEEEEEEeCCCCEEEEEECCC------CeEEEEECCCCeEEEEEe
Confidence            4333 357899999999987776542      289999999987665443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=8.4e-15  Score=149.57  Aligned_cols=328  Identities=11%  Similarity=0.096  Sum_probs=192.1

Q ss_pred             ecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEe-ccCC--cceeccCCeEEEEeccC
Q 004971          211 LTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIV-ENGG--WPCWVDESTLFFHRKSE  287 (721)
Q Consensus       211 lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~-~~~~--~~~ws~dg~l~~~~~~~  287 (721)
                      |..|...... .+++||++||.++.+            ..|.+||+.+++...... +.+.  ..+|++++.++.   ..
T Consensus         8 L~GH~~~vit-c~~~~~~~l~tgs~D------------g~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s---~s   71 (355)
T d1nexb2           8 LRGHMTSVIT-CLQFEDNYVITGADD------------KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS---GS   71 (355)
T ss_dssp             EECCSSSCEE-EEEEETTEEEEEETT------------TEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEE---EE
T ss_pred             ECCcCCCcEE-EEEECCCEEEEEeCC------------CeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEE---Ee
Confidence            4455444333 478899999987644            468999999888655443 3333  458998865443   23


Q ss_pred             CCCcEEEEEEecCCCcceeccccceEEeCCC--CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc
Q 004971          288 EDDWISVYKVILPQTGLVSTESVSIQRVTPP--GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF  365 (721)
Q Consensus       288 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~  365 (721)
                      .++.+.+|......         ........  ........+++ +++.++...     .+..|.+||+.++........
T Consensus        72 ~D~~i~iw~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~d~~i~iw~~~~~~~~~~~~~  136 (355)
T d1nexb2          72 TDRTVRVWDIKKGC---------CTHVFEGHNSTVRCLDIVEYK-NIKYIVTGS-----RDNTLHVWKLPKESSVPDHGE  136 (355)
T ss_dssp             TTCCEEEEETTTTE---------EEEEECCCSSCEEEEEEEEET-TEEEEEEEE-----TTSEEEEEECCC---------
T ss_pred             cccccccccccccc---------ccccccccccccccccccccc-ccceeeeec-----CCCcEEEEEccCCceeccccc
Confidence            37888888543222         22222222  22233456778 888887754     345699999987653221110


Q ss_pred             cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEE
Q 004971          366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVV  444 (721)
Q Consensus       366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~  444 (721)
                         .........++......                +...  ...         ......+.++++.++... +..+.+|
T Consensus       137 ---~~~~~~~~~~~~~~~~~----------------~~~~--~~~---------~~~v~~~~~~~~~~~~~~~d~~i~~~  186 (355)
T d1nexb2         137 ---EHDYPLVFHTPEENPYF----------------VGVL--RGH---------MASVRTVSGHGNIVVSGSYDNTLIVW  186 (355)
T ss_dssp             -----CCCEEESCTTTCTTE----------------EEEE--ECC---------SSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred             ---cceeccceeccccccce----------------eeee--eec---------cccccccccccceeeeecccceeeee
Confidence               00000000111110000                0000  000         011124567788777774 7789999


Q ss_pred             ECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccC
Q 004971          445 NSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPD  521 (721)
Q Consensus       445 d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpD  521 (721)
                      |+.+++.....   ........++|+++.++..+       .++.+.+|++....     ....+..+...+..++|+  
T Consensus       187 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~i~i~d~~~~~-----~~~~~~~h~~~v~~~~~~--  252 (355)
T d1nexb2         187 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-------MDTTIRIWDLENGE-----LMYTLQGHTALVGLLRLS--  252 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-------TTSCEEEEETTTCC-----EEEEECCCSSCCCEEEEC--
T ss_pred             ecccccceeeeeccccccccccccccceeeeccc-------ccceEEeeeccccc-----cccccccccccccccccc--
Confidence            99888755444   34566889999999999886       46788888765432     555666666666666665  


Q ss_pred             CCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCc-eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE
Q 004971          522 GKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD-TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK  600 (721)
Q Consensus       522 g~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~-~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~  600 (721)
                      +++|+..+.   +..|++||+.++..    .+..+...+ ....++++++.|+.+. ++       .|++||+.+++...
T Consensus       253 ~~~l~~~~~---dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~g~-d~-------~i~vwd~~tg~~~~  317 (355)
T d1nexb2         253 DKFLVSAAA---DGSIRGWDANDYSR----KFSYHHTNLSAITTFYVSDNILVSGS-EN-------QFNIYNLRSGKLVH  317 (355)
T ss_dssp             SSEEEEECT---TSEEEEEETTTCCE----EEEEECTTCCCCCEEEECSSEEEEEE-TT-------EEEEEETTTCCBCC
T ss_pred             cceeeeeec---ccccccccccccce----ecccccCCceEEEEEcCCCCEEEEEe-CC-------EEEEEECCCCCEEE
Confidence            578887776   67899999987762    222222222 3346788888666554 43       79999999987653


Q ss_pred             eeecCCCCCcCCeEECCCCCEEEEEEecCC
Q 004971          601 LIQSGSAGRANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       601 l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      ....++...+..++|+|+  .++.+...++
T Consensus       318 ~~~~~~~~~V~~v~~~~~--~~~~~~s~dg  345 (355)
T d1nexb2         318 ANILKDADQIWSVNFKGK--TLVAAVEKDG  345 (355)
T ss_dssp             SCTTTTCSEEEEEEEETT--EEEEEEESSS
T ss_pred             EEecCCCCCEEEEEEcCC--eEEEEEECCC
Confidence            332336667888999986  4555544443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=2.2e-14  Score=145.67  Aligned_cols=282  Identities=12%  Similarity=0.094  Sum_probs=165.2

Q ss_pred             CCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCc--eEEeecc
Q 004971          288 EDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNK--FIELTRF  365 (721)
Q Consensus       288 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~--~~~l~~~  365 (721)
                      +++.+.+|.+...+..       +..+...++..+..++||| ||++|+....    .+..|.+|++..+.  .+.... 
T Consensus        12 ~~~~I~v~~~~~~~~l-------~~~~~~~~~~~v~~la~sp-DG~~L~v~~~----~d~~i~~~~i~~~~~~~~~~~~-   78 (333)
T d1ri6a_          12 ESQQIHVWNLNHEGAL-------TLTQVVDVPGQVQPMVVSP-DKRYLYVGVR----PEFRVLAYRIAPDDGALTFAAE-   78 (333)
T ss_dssp             GGTEEEEEEECTTSCE-------EEEEEEECSSCCCCEEECT-TSSEEEEEET----TTTEEEEEEECTTTCCEEEEEE-
T ss_pred             CCCcEEEEEEcCCCCe-------EEEEEEcCCCCEeEEEEeC-CCCEEEEEEC----CCCeEEEEEEeCCCCcEEEeee-
Confidence            3678889976654432       3344445555678999999 9999976542    23458888887553  222221 


Q ss_pred             cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC--cc--eecccCCCCceeCcCCCEEEEEe--CC
Q 004971          366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DI--SLFRFDGSFPSFSPKGDRIAFVE--FP  439 (721)
Q Consensus       366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~--~~~~~~~~~~~~SpDG~~la~~~--~~  439 (721)
                      .........++|||||++|++......        .+..........  ..  .........+.++||+++++...  ..
T Consensus        79 ~~~~~~p~~l~~spDg~~l~v~~~~~~--------~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~  150 (333)
T d1ri6a_          79 SALPGSLTHISTDHQGQFVFVGSYNAG--------NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQD  150 (333)
T ss_dssp             EECSSCCSEEEECTTSSEEEEEETTTT--------EEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGT
T ss_pred             cccCCCceEEEEcCCCCEEeecccCCC--------ceeeeccccccceecccccCCCccceEEEeeecceeeeccccccc
Confidence            222344567899999999988654433        233333222210  11  11112234578999999988874  56


Q ss_pred             cEEEEECCCCceEEEe---------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc--
Q 004971          440 GVYVVNSDGSNRRQVY---------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT--  508 (721)
Q Consensus       440 ~l~v~d~~~g~~~~l~---------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~--  508 (721)
                      .+.+++..........         ......++|++++..++....      ......++.+....... .....+..  
T Consensus       151 ~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~-~~~~~~~~~~  223 (333)
T d1ri6a_         151 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE------LNSSVDVWELKDPHGNI-ECVQTLDMMP  223 (333)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET------TTTEEEEEESSCTTSCC-EEEEEEECSC
T ss_pred             eeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecc------ccCceEEEeecccccce-eeeeeeeeee
Confidence            7888887655422211         123467899999999888763      34555666654433200 01111111  


Q ss_pred             -C---CCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCC
Q 004971          509 -N---GKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSG  584 (721)
Q Consensus       509 -~---~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~  584 (721)
                       .   ......+++++||+++++.....+...+|.++..++... .............++|||||++|+++..+.    +
T Consensus       224 ~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~a~spDGk~l~va~~~~----~  298 (333)
T d1ri6a_         224 ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS-KEGFQPTETQPRGFNVDHSGKYLIAAGQKS----H  298 (333)
T ss_dssp             TTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE-EEEEEECSSSCCCEEECTTSSEEEEECTTT----C
T ss_pred             cCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEE-EEEEeCCCCCeeEEEEeCCCCEEEEEECCC----C
Confidence             1   123345789999999888776444445555554443321 222222223346799999999988776553    4


Q ss_pred             ceeEEEEecCCCceEEee
Q 004971          585 SFEMYLIHPNGTGLRKLI  602 (721)
Q Consensus       585 ~~~i~~~d~~~~~~~~l~  602 (721)
                      .-.||.+|.++|+++++.
T Consensus       299 ~v~v~~id~~tG~l~~~~  316 (333)
T d1ri6a_         299 HISVYEIVGEQGLLHEKG  316 (333)
T ss_dssp             EEEEEEEETTTTEEEEEE
T ss_pred             eEEEEEEECCCCcEEEEE
Confidence            445666788888776553

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.67  E-value=6.4e-14  Score=145.03  Aligned_cols=309  Identities=9%  Similarity=0.000  Sum_probs=175.7

Q ss_pred             cceeccCCe-EEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecC-----CC
Q 004971          271 WPCWVDEST-LFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRP-----TS  344 (721)
Q Consensus       271 ~~~ws~dg~-l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~-----g~  344 (721)
                      ..+++|||+ +++.......+...+|.++...+.       ....+.. + ....++||| ||++|++.....     +.
T Consensus        25 ~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~-------~~~~~~~-~-~~~~~a~Sp-DG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          25 DEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGS-------ILGHVNG-G-FLPNPVAAH-SGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccccCCCCCEEEEEcccccCCCceEEEEECCCCC-------EEEEEeC-C-CCccEEEcC-CCCEEEEEeecCCcccccc
Confidence            457999987 444322222445567744433322       2333322 2 224789999 999999876432     23


Q ss_pred             CeeeEEEEECCCCceEEeecccCC-----CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceeccc
Q 004971          345 SYRHIELFDLVKNKFIELTRFVSP-----KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRF  419 (721)
Q Consensus       345 ~~~~l~l~dl~tg~~~~l~~~~~~-----~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  419 (721)
                      .+..|.+||+.+++..........     ........|++|++.+++......       ..+.+.+....  .+.....
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~-------~~~~~~~~~~~--~~~~~~~  165 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG-------PAVGLVVQGGS--SDDQLLS  165 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCC-------CceEEeeccCC--eEEEEec
Confidence            346699999999985433221110     112345789999999887765554       22334433322  1122222


Q ss_pred             CCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEee---------cCceeeEEcCCCCeEEEEecCCCCCCCCCcEE
Q 004971          420 DGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYF---------KNAFSTVWDPVREAVVYTSGGPEFASESSEVD  488 (721)
Q Consensus       420 ~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~~---------~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~  488 (721)
                      ......++|+|+.+++.  .++.+.+|+..+++......         .......+++++..++...        ++.+.
T Consensus       166 ~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~  237 (373)
T d2madh_         166 SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--------SGKIL  237 (373)
T ss_pred             cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecC--------CceEE
Confidence            23456889999887655  47889999998877544320         1122345566665554432        23333


Q ss_pred             EEEEEccCC-------CCccceEEcccCCCCCcceEEccCCCEEEEEEeeC-------CceeEEEEECCCCcccceEECc
Q 004971          489 IISINVDDV-------DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT-------GYKNLYIMDAEGGEGYGLHRLT  554 (721)
Q Consensus       489 i~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~-------g~~~l~~~d~~~g~~~~~~~l~  554 (721)
                      ++.......       ...................+++||++++++.....       ....+++||..+++.  +..+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~--~~~~~  315 (373)
T d2madh_         238 QADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQIS  315 (373)
T ss_pred             EEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcE--EEEec
Confidence            333222110       00001111111122344578999999888765432       245789999998885  44444


Q ss_pred             CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEE
Q 004971          555 EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF  615 (721)
Q Consensus       555 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~  615 (721)
                      .+ .....++|||||++++|....     ....|++||+.+++....... +......+++
T Consensus       316 ~~-~~~~~~a~spDG~~~l~vt~~-----~d~~v~v~D~~tg~~~~~~~~-~g~~P~~l~~  369 (373)
T d2madh_         316 LG-HDVDAISVAQDGGPDLYALSA-----GTEVLHIYDAGAGDQDQSTVE-LGSGPQVLSV  369 (373)
T ss_pred             CC-CCeeEEEECCCCCEEEEEEeC-----CCCeEEEEECCCCCEEEEECC-CCCCCcEEEE
Confidence            33 345789999999987665543     224899999999987665532 3333344443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.66  E-value=1.8e-14  Score=146.89  Aligned_cols=315  Identities=12%  Similarity=0.022  Sum_probs=188.1

Q ss_pred             ceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeC-CCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          272 PCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVT-PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       272 ~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      |++++++++++.  ...++.+.+|++....         ....+. ++......++|+| ||++++.....    +..|.
T Consensus         2 ~a~~~~~~~l~~--~~~~~~v~v~D~~t~~---------~~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~----~~~v~   65 (346)
T d1jmxb_           2 PALKAGHEYMIV--TNYPNNLHVVDVASDT---------VYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNH----YGDIY   65 (346)
T ss_dssp             CCCCTTCEEEEE--EETTTEEEEEETTTTE---------EEEEEECSSCCSSCEEEECT-TSSEEEEEETT----TTEEE
T ss_pred             ccCCCCCcEEEE--EcCCCEEEEEECCCCC---------EEEEEEcCCCCCcceEEECC-CCCEEEEEECC----CCcEE
Confidence            678999997774  3336777777542211         222222 3344567899999 99988765433    34599


Q ss_pred             EEECCCCceEEeecccCC----CCcccCcEEcCCCCEEEEEEeeCCCCC---CCCcceeEEEeccCCC--Cccee--ccc
Q 004971          351 LFDLVKNKFIELTRFVSP----KTHHLNPFISPDSSRVGYHKCRGGSTR---EDGNNQLLLENIKSPL--PDISL--FRF  419 (721)
Q Consensus       351 l~dl~tg~~~~l~~~~~~----~~~~~~~~~Spdg~~l~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~~~--~~~  419 (721)
                      +||+.+++..........    ......+++||||++++..........   ......+.+.+.....  ..+..  .+.
T Consensus        66 ~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  145 (346)
T d1jmxb_          66 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR  145 (346)
T ss_dssp             EEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS
T ss_pred             EEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccC
Confidence            999999975433221111    112457899999999988765432110   0001234444443321  11111  112


Q ss_pred             CCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971          420 DGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV  497 (721)
Q Consensus       420 ~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~  497 (721)
                      ......+++|++.++  ....+.+|++.+++.....  ........++|++..++....      ....+.++....   
T Consensus       146 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---  214 (346)
T d1jmxb_         146 QVYLMRAADDGSLYV--AGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQS------PRHEFSMLYTIA---  214 (346)
T ss_dssp             SCCCEEECTTSCEEE--ESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCC------TTCEEEEEEEEE---
T ss_pred             ceEEEEecCCCEEEE--eCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEec------CCCceEeeeeee---
Confidence            233456677776443  3567899999887754433  345667888999988766542      222333222211   


Q ss_pred             CCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEc
Q 004971          498 DGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASD  577 (721)
Q Consensus       498 ~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~  577 (721)
                                         .+.++...++....   ...+.+||..++... ......+........+++++..+++...
T Consensus       215 -------------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (346)
T d1jmxb_         215 -------------------RFKDDKQDPATADL---LYGYLSVDLKTGKTH-TQEFADLTELYFTGLRSPKDPNQIYGVL  271 (346)
T ss_dssp             -------------------EC-------CCCEE---EEEEEEEETTTCCEE-EEEEEECSSCEEEEEECSSCTTEEEEEE
T ss_pred             -------------------eeccCceeEeeccC---CceEEEEECCCCceE-EEEeecccceeEEEEEeCCCCEEEEecC
Confidence                               11122222222222   457889999888731 1222234444567889999998888776


Q ss_pred             cCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971          578 RDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       578 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  657 (721)
                      +        .|++||..+++......  ....+..++|||||++|+..+.++                 .|.+||+++++
T Consensus       272 ~--------~v~v~d~~~~~~~~~~~--~~~~~~~va~s~DG~~l~v~~~d~-----------------~v~v~D~~t~~  324 (346)
T d1jmxb_         272 N--------RLAKYDLKQRKLIKAAN--LDHTYYCVAFDKKGDKLYLGGTFN-----------------DLAVFNPDTLE  324 (346)
T ss_dssp             S--------EEEEEETTTTEEEEEEE--CSSCCCEEEECSSSSCEEEESBSS-----------------EEEEEETTTTE
T ss_pred             C--------eEEEEECCCCcEEEEEc--CCCCEEEEEEcCCCCEEEEEeCCC-----------------cEEEEECccCC
Confidence            5        79999999988766554  345688999999999998765543                 49999999876


Q ss_pred             e-EEecc
Q 004971          658 L-KRLTQ  663 (721)
Q Consensus       658 ~-~~lt~  663 (721)
                      . .+|.-
T Consensus       325 ~i~~i~~  331 (346)
T d1jmxb_         325 KVKNIKL  331 (346)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            5 45554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=8e-14  Score=143.05  Aligned_cols=323  Identities=14%  Similarity=0.133  Sum_probs=186.6

Q ss_pred             cccccCCEEEEEecCCCCCCCCCccceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeee
Q 004971          171 KPILSGEYLIYVSTHENPGTPRTSWAAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTD  250 (721)
Q Consensus       171 sP~~dg~~l~~~~~~~~~~~~~~~~~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~  250 (721)
                      +|  ||+++++.....+..     ...+|.+|.++++.....+.+ ....++|||||++|++++....  +...+.....
T Consensus        10 sp--dg~~~~v~~~~~~~~-----~~~v~v~D~~tg~~~~~~~~g-~~~~~a~SpDg~~l~v~~~~~~--~~~~g~~d~~   79 (355)
T d2bbkh_          10 AP--DARRVYVNDPAHFAA-----VTQQFVIDGEAGRVIGMIDGG-FLPNPVVADDGSFIAHASTVFS--RIARGERTDY   79 (355)
T ss_dssp             CC--CTTEEEEEECGGGCS-----SEEEEEEETTTTEEEEEEEEC-SSCEEEECTTSSCEEEEEEEEE--ETTEEEEEEE
T ss_pred             CC--CCCEEEEEecccCCC-----cCeEEEEECCCCcEEEEEECC-CCCceEEcCCCCEEEEEeCCCc--cccccCCCCE
Confidence            78  999986654332211     147999999988765432322 2234699999999998754221  1111223467


Q ss_pred             EEEEEcCCCceeEEEeccCCcceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecC
Q 004971          251 IYIFLTRDGTQRVKIVENGGWPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPG  330 (721)
Q Consensus       251 i~~~d~~~g~~~~l~~~~~~~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~  330 (721)
                      |++||+.+++......                                ....        ....+   ......++|+| 
T Consensus        80 v~v~D~~t~~~~~~~~--------------------------------~~~~--------~~~~~---~~~~~~~~~s~-  115 (355)
T d2bbkh_          80 VEVFDPVTLLPTADIE--------------------------------LPDA--------PRFLV---GTYPWMTSLTP-  115 (355)
T ss_dssp             EEEECTTTCCEEEEEE--------------------------------ETTC--------CCCCB---SCCGGGEEECT-
T ss_pred             EEEEECCCCCEEEEEe--------------------------------cCCc--------ceeec---CCCCceEEEec-
Confidence            8888887776443210                                0000        00011   11234678999 


Q ss_pred             CCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC-----CCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEE
Q 004971          331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS-----PKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLE  405 (721)
Q Consensus       331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~-----~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~  405 (721)
                      ||+++++....   ....+.+|+..+++.........     .......+.+++||+.+++......        .+...
T Consensus       116 dg~~~~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~--------~~~~~  184 (355)
T d2bbkh_         116 DGKTLLFYQFS---PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG--------TPEIT  184 (355)
T ss_dssp             TSSEEEEEECS---SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSS--------CCEEE
T ss_pred             CCCeeEEecCC---CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCC--------eEEEE
Confidence            99998876433   23458899999887543221110     0112334678999998877544433        12222


Q ss_pred             eccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe---------------ecCceeeEEcCCCC
Q 004971          406 NIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY---------------FKNAFSTVWDPVRE  469 (721)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~---------------~~~~~~~~~spdg~  469 (721)
                      +.......   .........+++++..+++.. .+.++++++.+++...+.               ......+++++|++
T Consensus       185 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~  261 (355)
T d2bbkh_         185 HTEVFHPE---DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD  261 (355)
T ss_dssp             ECCCCSCT---TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT
T ss_pred             ecccccce---ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCC
Confidence            22221110   011123357777788888874 778999999888754433               12344689999999


Q ss_pred             eEEEEecCC-CCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc
Q 004971          470 AVVYTSGGP-EFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY  548 (721)
Q Consensus       470 ~la~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~  548 (721)
                      .+++..... ..........|+.++..+.   .....+..+ .....++|||||+++++.+.. ++..|++||+++++. 
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~v~v~d~~t~---~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~-~d~~i~v~D~~tg~~-  335 (355)
T d2bbkh_         262 RIYLLVDQRDEWRHKTASRFVVVLDAKTG---ERLAKFEMG-HEIDSINVSQDEKPLLYALST-GDKTLYIHDAESGEE-  335 (355)
T ss_dssp             EEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEEE-EEECEEEECCSSSCEEEEEET-TTTEEEEEETTTCCE-
T ss_pred             eEEEEeccCCceeecCCCCeEEEEeCCCC---cEEEEecCC-CCEEEEEEcCCCCeEEEEEEC-CCCEEEEEECCCCCE-
Confidence            998876422 1222334455666666543   133344332 356779999999976666532 256899999999985 


Q ss_pred             ceEECcCCCcCceeeEEccC
Q 004971          549 GLHRLTEGPWSDTMCNWSPD  568 (721)
Q Consensus       549 ~~~~l~~~~~~~~~~~~SpD  568 (721)
                       +..+.........+.+.++
T Consensus       336 -~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         336 -LRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             -EEEECCCCSSCCEEECCCC
T ss_pred             -EEEEeCcCCCccEEEeCCC
Confidence             6666543222233444433

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=1.9e-14  Score=146.31  Aligned_cols=273  Identities=13%  Similarity=0.026  Sum_probs=168.6

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCC-CCcccCcEEcC--CCCEEEEEEeeCCCCCCC
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSP-KTHHLNPFISP--DSSRVGYHKCRGGSTRED  397 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~-~~~~~~~~~Sp--dg~~l~~~~~~~~~~~~~  397 (721)
                      ....++|+| +|+.|++...    ....|+.||....+...+....+| ...+..++|+|  +|++|+..+.++.     
T Consensus        19 ~~t~l~~~~-~~~~la~~~~----~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~-----   88 (325)
T d1pgua1          19 FTTHLSYDP-TTNAIAYPCG----KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGK-----   88 (325)
T ss_dssp             CCCCCEEET-TTTEEEEEET----TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSE-----
T ss_pred             CeEEEEECC-CCCEEEEEeC----CCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCC-----
Confidence            345788999 9999998642    223355566544433333333343 34577899998  5667776554444     


Q ss_pred             CcceeEEEeccCCCCcce--------ecccCCCCceeCcCCCEEEEEe---CCcEEEEECCCCceEEE-e--ecCceeeE
Q 004971          398 GNNQLLLENIKSPLPDIS--------LFRFDGSFPSFSPKGDRIAFVE---FPGVYVVNSDGSNRRQV-Y--FKNAFSTV  463 (721)
Q Consensus       398 ~~~~l~~~~~~~~~~~~~--------~~~~~~~~~~~SpDG~~la~~~---~~~l~v~d~~~g~~~~l-~--~~~~~~~~  463 (721)
                        .++|-.........+.        ........++|++||++|+..+   ...+.+++.++++.... .  ...+..+.
T Consensus        89 --i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  166 (325)
T d1pgua1          89 --VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACH  166 (325)
T ss_dssp             --EEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEE
T ss_pred             --EEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccccccccc
Confidence              3344332211111111        0111234578999999998874   45688899888775433 3  45678899


Q ss_pred             EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc---cCCCCCcceEEccC-CCEEEEEEeeCCceeEEE
Q 004971          464 WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT---TNGKNNAFPSVSPD-GKWIVFRSTRTGYKNLYI  539 (721)
Q Consensus       464 ~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~SpD-g~~l~~~s~~~g~~~l~~  539 (721)
                      |+|++..++++.      ..++.+.+|++....     ....+.   .+...+..++|+|| ++.|+..+.   +..|++
T Consensus       167 ~~~~~~~~~~~~------~~d~~v~~~d~~~~~-----~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~---d~~i~i  232 (325)
T d1pgua1         167 LKQSRPMRSMTV------GDDGSVVFYQGPPFK-----FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS---DRKISC  232 (325)
T ss_dssp             ECSSSSCEEEEE------ETTTEEEEEETTTBE-----EEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---TCCEEE
T ss_pred             ccccccceEEEe------ecccccccccccccc-----cceecccccCCCCccEEeeeccccceecccccc---ccceee
Confidence            999998866654      256788888754321     222222   22345677899998 466666665   678999


Q ss_pred             EECCCCcccceEECcCCCcCceeeEEc---cCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCC--CcCCeE
Q 004971          540 MDAEGGEGYGLHRLTEGPWSDTMCNWS---PDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG--RANHPY  614 (721)
Q Consensus       540 ~d~~~g~~~~~~~l~~~~~~~~~~~~S---pDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~--~~~~~~  614 (721)
                      ||..+++.  +..+..+...+..+.|+   |||++|+.++.++       .|++||+.+++..+.... +..  .....+
T Consensus       233 wd~~~~~~--~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~-------~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~  302 (325)
T d1pgua1         233 FDGKSGEF--LKYIEDDQEPVQGGIFALSWLDSQKFATVGADA-------TIRVWDVTTSKCVQKWTL-DKQQLGNQQVG  302 (325)
T ss_dssp             EETTTCCE--EEECCBTTBCCCSCEEEEEESSSSEEEEEETTS-------EEEEEETTTTEEEEEEEC-CTTCGGGCEEE
T ss_pred             eeeccccc--cccccccccccccceeeeeccCCCEEEEEeCCC-------eEEEEECCCCCEEEEEEe-cCCcccCeEEE
Confidence            99998875  66666555555556666   7999999988775       899999998876554332 222  223334


Q ss_pred             ECCCC-CEEEEEEecC
Q 004971          615 FSPDG-KSIVFTSDYG  629 (721)
Q Consensus       615 ~SpDG-~~l~~~~~~~  629 (721)
                      +.+.+ .+|+..+.++
T Consensus       303 ~~~~~~~~l~s~s~dg  318 (325)
T d1pgua1         303 VVATGNGRIISLSLDG  318 (325)
T ss_dssp             EEEEETTEEEEEETTS
T ss_pred             EEECCCCEEEEEECCC
Confidence            44333 3555544443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=5.5e-14  Score=142.70  Aligned_cols=266  Identities=12%  Similarity=0.065  Sum_probs=167.6

Q ss_pred             eeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee-------cc
Q 004971          346 YRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL-------FR  418 (721)
Q Consensus       346 ~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~  418 (721)
                      +..|.+||+++++................++|||||++|+.+....        ..+.++++.++......       ..
T Consensus        10 d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~--------~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_          10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS--------ESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT--------TEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             CCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCC--------CeEEEEECCCCcEEEEEecCCCcccc
Confidence            3459999999998654433333344567899999999987754333        34777777665221111       01


Q ss_pred             cCCCCceeCcCCCEEEEEe-------------CCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCC
Q 004971          419 FDGSFPSFSPKGDRIAFVE-------------FPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASE  483 (721)
Q Consensus       419 ~~~~~~~~SpDG~~la~~~-------------~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~  483 (721)
                      .....++|||||++++...             ...+.++|..+++.....  ...+..+.|+|||++++..+        
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--------  153 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG--------  153 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES--------
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc--------
Confidence            2234579999999988772             356888999888765443  45677899999999999874        


Q ss_pred             CCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEE-------------Eee--------CCceeEEEEEC
Q 004971          484 SSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFR-------------STR--------TGYKNLYIMDA  542 (721)
Q Consensus       484 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~-------------s~~--------~g~~~l~~~d~  542 (721)
                       ....+|+.  ...   .....+.... ......++|++..+...             ...        .....+++++.
T Consensus       154 -~~~~~~d~--~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (337)
T d1pbyb_         154 -RDLHVMDP--EAG---TLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL  226 (337)
T ss_dssp             -SSEEEEET--TTT---EEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred             -CCcceeee--ecC---cEEEEeecCC-ccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEc
Confidence             23444433  221   1222222221 22233444444432111             100        01346888999


Q ss_pred             CCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEE
Q 004971          543 EGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSI  622 (721)
Q Consensus       543 ~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l  622 (721)
                      .++... ...............++|++++++... .        .|.+||+.+++......  ....+..++|||||++|
T Consensus       227 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dG~~l  294 (337)
T d1pbyb_         227 ETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGAY-N--------VLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTV  294 (337)
T ss_dssp             TTCCEE-EEEEEECSSCEEEEEECTTSSEEEEEE-S--------EEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEE
T ss_pred             CCCcEE-EEEecCCCcceEEEEecccceEEEEcc-c--------cEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEE
Confidence            888742 122223334456788999999876554 2        79999999988766554  45667889999999999


Q ss_pred             EEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EEecc
Q 004971          623 VFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLTQ  663 (721)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt~  663 (721)
                      +....++                 .|.+||+++.+. .+|.-
T Consensus       295 ~v~~~~~-----------------~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         295 WLGGALG-----------------DLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEESBSS-----------------EEEEEETTTCCEEEEEEC
T ss_pred             EEEeCCC-----------------cEEEEECCCCcEEEEEEC
Confidence            8765433                 599999988764 45554

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.63  E-value=1.1e-14  Score=148.15  Aligned_cols=271  Identities=12%  Similarity=0.044  Sum_probs=172.5

Q ss_pred             cceeccCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEE
Q 004971          271 WPCWVDESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIE  350 (721)
Q Consensus       271 ~~~ws~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~  350 (721)
                      ..+|+||++++++  ...++.+.||.+....         ....+..+...+..++|+| +|++++....     +..+.
T Consensus        60 ~l~~s~~~~~l~s--gs~Dg~v~iWd~~~~~---------~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~-----d~~i~  122 (340)
T d1tbga_          60 AMHWGTDSRLLVS--ASQDGKLIIWDSYTTN---------KVHAIPLRSSWVMTCAYAP-SGNYVACGGL-----DNICS  122 (340)
T ss_dssp             EEEECTTSSEEEE--EETTTEEEEEETTTTE---------EEEEEECSCSCEEEEEECT-TSSEEEEEET-----TCCEE
T ss_pred             EEEECCCCCEEEE--EECCCceeeeecccce---------eEEEEecccccEEeeEeec-cceeeeeecc-----cceee
Confidence            4489999987774  3347999999543222         3444555666778899999 9999988643     34588


Q ss_pred             EEECCCCceE--EeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCc--ceecccCCCCcee
Q 004971          351 LFDLVKNKFI--ELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPD--ISLFRFDGSFPSF  426 (721)
Q Consensus       351 l~dl~tg~~~--~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~  426 (721)
                      +|+.......  .......+.......... .+..+.....+..         ............  ............+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (340)
T d1tbga_         123 IYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTT---------CALWDIETGQQTTTFTGHTGDVMSLSL  192 (340)
T ss_dssp             EEESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTE---------EEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             cccccccccccccceecccccccccccccc-ccccccccccccc---------ccccccccccccccccccceeEeeecc
Confidence            8887654321  111112222222112222 2233332222111         111111111000  0001111223466


Q ss_pred             CcCCCEEEEE-eCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccc
Q 004971          427 SPKGDRIAFV-EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSA  502 (721)
Q Consensus       427 SpDG~~la~~-~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  502 (721)
                      .+++..++.. .++.+.+||+..++.....   ...+..++|+|+++.|+..+       .++.+.+|++....     .
T Consensus       193 ~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s-------~d~~i~~~~~~~~~-----~  260 (340)
T d1tbga_         193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-------DDATCRLFDLRADQ-----E  260 (340)
T ss_dssp             CTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSCEEEEETTTTE-----E
T ss_pred             ccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEe-------CCCeEEEEeecccc-----c
Confidence            7777777766 4788999999988765443   45678899999999999886       56888888775432     2


Q ss_pred             eEEccc--CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCC
Q 004971          503 VRRLTT--NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDN  580 (721)
Q Consensus       503 ~~~l~~--~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~  580 (721)
                      ...+..  ....+..++|+|+|++|+..+.   +..|++||+.+++.  +..+..+...+..++|+|||++|+.++.++ 
T Consensus       261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~---dg~i~iwd~~~~~~--~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg-  334 (340)
T d1tbga_         261 LMTYSHDNIICGITSVSFSKSGRLLLAGYD---DFNCNVWDALKADR--AGVLAGHDNRVSCLGVTDDGMAVATGSWDS-  334 (340)
T ss_dssp             EEEECCTTCCSCEEEEEECSSSCEEEEEET---TSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCEEEEETTS-
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEEC---CCEEEEEECCCCcE--EEEEcCCCCCEEEEEEeCCCCEEEEEccCC-
Confidence            233322  2245677899999999998886   77899999998885  667777777789999999999999888775 


Q ss_pred             CCCCceeEEEEe
Q 004971          581 PGSGSFEMYLIH  592 (721)
Q Consensus       581 ~~~~~~~i~~~d  592 (721)
                            .|++||
T Consensus       335 ------~v~iWd  340 (340)
T d1tbga_         335 ------FLKIWN  340 (340)
T ss_dssp             ------CEEEEC
T ss_pred             ------EEEEeC
Confidence                  799986

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=7.8e-14  Score=142.19  Aligned_cols=301  Identities=10%  Similarity=-0.031  Sum_probs=191.6

Q ss_pred             EEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971          313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG  392 (721)
Q Consensus       313 ~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~  392 (721)
                      ..+.+|...+.. ++++ ||++|+...     .++.|.+||+.+++.  +..+..|...+..++|+|++ .|+..+.++.
T Consensus         6 ~tL~GH~~~vit-c~~~-~~~~l~tgs-----~Dg~i~vWd~~~~~~--~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~   75 (355)
T d1nexb2           6 TTLRGHMTSVIT-CLQF-EDNYVITGA-----DDKMIRVYDSINKKF--LLQLSGHDGGVWALKYAHGG-ILVSGSTDRT   75 (355)
T ss_dssp             EEEECCSSSCEE-EEEE-ETTEEEEEE-----TTTEEEEEETTTTEE--EEEEECCSSCEEEEEEETTT-EEEEEETTCC
T ss_pred             EEECCcCCCcEE-EEEE-CCCEEEEEe-----CCCeEEEEECCCCcE--EEEEECCCCCEEEEEEcCCC-EEEEEecccc
Confidence            335566443322 5788 999888753     456699999999874  44456678888899999865 6666554444


Q ss_pred             CCCCCCcceeEEEeccCCCCcceecc----cCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe------------
Q 004971          393 STREDGNNQLLLENIKSPLPDISLFR----FDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY------------  455 (721)
Q Consensus       393 ~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~------------  455 (721)
                               +.+++............    .......++++++.++... ++.|.+|++..+......            
T Consensus        76 ---------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  146 (355)
T d1nexb2          76 ---------VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT  146 (355)
T ss_dssp             ---------EEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESC
T ss_pred             ---------cccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceec
Confidence                     44444433311111100    0012245678888887774 778999998765432111            


Q ss_pred             ------------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCC
Q 004971          456 ------------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGK  523 (721)
Q Consensus       456 ------------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~  523 (721)
                                  ........+.++++.++...       .+..+.+|++....     ................|+|+++
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~d~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  214 (355)
T d1nexb2         147 PEENPYFVGVLRGHMASVRTVSGHGNIVVSGS-------YDNTLIVWDVAQMK-----CLYILSGHTDRIYSTIYDHERK  214 (355)
T ss_dssp             TTTCTTEEEEEECCSSCEEEEEEETTEEEEEE-------TTSCEEEEETTTTE-----EEEEECCCSSCEEEEEEETTTT
T ss_pred             cccccceeeeeeeccccccccccccceeeeec-------ccceeeeeeccccc-----ceeeeeccccccccccccccce
Confidence                        00111234566778777765       45677777654321     3334444445667789999999


Q ss_pred             EEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971          524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ  603 (721)
Q Consensus       524 ~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  603 (721)
                      .++..+.   +..|++||..++..  +..+..+...+..++|+  ++.|+.+..++       .|++||+.++.......
T Consensus       215 ~~~~~~~---d~~i~i~d~~~~~~--~~~~~~h~~~v~~~~~~--~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~  280 (355)
T d1nexb2         215 RCISASM---DTTIRIWDLENGEL--MYTLQGHTALVGLLRLS--DKFLVSAAADG-------SIRGWDANDYSRKFSYH  280 (355)
T ss_dssp             EEEEEET---TSCEEEEETTTCCE--EEEECCCSSCCCEEEEC--SSEEEEECTTS-------EEEEEETTTCCEEEEEE
T ss_pred             eeecccc---cceEEeeecccccc--ccccccccccccccccc--cceeeeeeccc-------ccccccccccceecccc
Confidence            9998887   77899999998875  56666666666777776  56888887765       89999998876443322


Q ss_pred             cCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE--EeccCCCCCCCceecCCcC
Q 004971          604 SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK--RLTQNSFEDGTPAWGPRFI  678 (721)
Q Consensus       604 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~lt~~~~~~~~~~~sp~~l  678 (721)
                        +........++++++.|+.. .++                 .|++||+++++..  .+..+...+.+.+|+|..+
T Consensus       281 --~~~~~~~~~~~~~~~~l~~g-~d~-----------------~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~  337 (355)
T d1nexb2         281 --HTNLSAITTFYVSDNILVSG-SEN-----------------QFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL  337 (355)
T ss_dssp             --CTTCCCCCEEEECSSEEEEE-ETT-----------------EEEEEETTTCCBCCSCTTTTCSEEEEEEEETTEE
T ss_pred             --cCCceEEEEEcCCCCEEEEE-eCC-----------------EEEEEECCCCCEEEEEecCCCCCEEEEEEcCCeE
Confidence              22333345678888866544 443                 3999999988754  3455666677888998744

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.58  E-value=7e-14  Score=142.46  Aligned_cols=309  Identities=10%  Similarity=0.023  Sum_probs=172.3

Q ss_pred             cccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEe-ccCC---cceeccCCeEEEEeccCCCCcEEEEE
Q 004971          221 PAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIV-ENGG---WPCWVDESTLFFHRKSEEDDWISVYK  296 (721)
Q Consensus       221 p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~-~~~~---~~~ws~dg~l~~~~~~~~~g~~~l~~  296 (721)
                      |+||++|++|++.+.+            ..|.+||+++++..+... ..+.   ..+|+|||+.+|.. ...++.+.+|.
T Consensus         2 ~a~~~~~~~l~~~~~~------------~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~-~~~~~~v~~~d   68 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYP------------NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVL-NNHYGDIYGID   68 (346)
T ss_dssp             CCCCTTCEEEEEEETT------------TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEE-ETTTTEEEEEE
T ss_pred             ccCCCCCcEEEEEcCC------------CEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEE-ECCCCcEEEEe
Confidence            7899999999997643            469999999998765443 2232   45999999865532 22356666664


Q ss_pred             EecCCCcceeccccceEEeCCC------CCcccCceeecCCCCEEEEEEecC-------CCCeeeEEEEECCCCceEEee
Q 004971          297 VILPQTGLVSTESVSIQRVTPP------GLHAFTPATSPGNNKFIAVATRRP-------TSSYRHIELFDLVKNKFIELT  363 (721)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~sp~dG~~la~~~~~~-------g~~~~~l~l~dl~tg~~~~l~  363 (721)
                      ..  .+.       ....+...      ......+++|| ||++++......       ...+..+.++|..+++.....
T Consensus        69 ~~--t~~-------~~~~~~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  138 (346)
T d1jmxb_          69 LD--TCK-------NTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV  138 (346)
T ss_dssp             TT--TTE-------EEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred             Cc--cCe-------eeeeecccccccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEE
Confidence            32  211       12222111      11245789999 999987765321       112445788888877643222


Q ss_pred             cccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcc-eecccCCCCceeCcCCCEEEEEe--CCc
Q 004971          364 RFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDI-SLFRFDGSFPSFSPKGDRIAFVE--FPG  440 (721)
Q Consensus       364 ~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~SpDG~~la~~~--~~~  440 (721)
                      .............++++++.++..   .         .+.+++...+.... ...........++|++..++...  ...
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (346)
T d1jmxb_         139 RTFPMPRQVYLMRAADDGSLYVAG---P---------DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHE  206 (346)
T ss_dssp             EEEECCSSCCCEEECTTSCEEEES---S---------SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCE
T ss_pred             EeeeccCceEEEEecCCCEEEEeC---C---------cceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCc
Confidence            111112334456677777654431   1         23334433321110 11112234567888887655442  222


Q ss_pred             EEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc
Q 004971          441 VYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP  520 (721)
Q Consensus       441 l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp  520 (721)
                      +.+++...              ...++...++         .......+..++....  ......+..+........+++
T Consensus       207 ~~~~~~~~--------------~~~~~~~~~~---------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  261 (346)
T d1jmxb_         207 FSMLYTIA--------------RFKDDKQDPA---------TADLLYGYLSVDLKTG--KTHTQEFADLTELYFTGLRSP  261 (346)
T ss_dssp             EEEEEEEE--------------EC-------C---------CCEEEEEEEEEETTTC--CEEEEEEEECSSCEEEEEECS
T ss_pred             eEeeeeee--------------eeccCceeEe---------eccCCceEEEEECCCC--ceEEEEeecccceeEEEEEeC
Confidence            32222110              0011111111         1122333444444432  012223334444566788999


Q ss_pred             CCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE
Q 004971          521 DGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK  600 (721)
Q Consensus       521 Dg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~  600 (721)
                      ++.++++...    ..|++||..+++.  +..+..+ ..+..++|||||++|+.+..++       .|.+||+.+++...
T Consensus       262 ~~~~~~~~~~----~~v~v~d~~~~~~--~~~~~~~-~~~~~va~s~DG~~l~v~~~d~-------~v~v~D~~t~~~i~  327 (346)
T d1jmxb_         262 KDPNQIYGVL----NRLAKYDLKQRKL--IKAANLD-HTYYCVAFDKKGDKLYLGGTFN-------DLAVFNPDTLEKVK  327 (346)
T ss_dssp             SCTTEEEEEE----SEEEEEETTTTEE--EEEEECS-SCCCEEEECSSSSCEEEESBSS-------EEEEEETTTTEEEE
T ss_pred             CCCEEEEecC----CeEEEEECCCCcE--EEEEcCC-CCEEEEEEcCCCCEEEEEeCCC-------cEEEEECccCCEEE
Confidence            9999888764    5799999998874  4444322 3457899999999999887664       89999999987665


Q ss_pred             eee
Q 004971          601 LIQ  603 (721)
Q Consensus       601 l~~  603 (721)
                      ...
T Consensus       328 ~i~  330 (346)
T d1jmxb_         328 NIK  330 (346)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.57  E-value=8.9e-13  Score=136.23  Aligned_cols=291  Identities=9%  Similarity=-0.029  Sum_probs=170.1

Q ss_pred             ceEEEEeCCCcceEeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEeccCCcceec
Q 004971          196 AAVYSTELKTGLTRRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVENGGWPCWV  275 (721)
Q Consensus       196 ~~l~~v~~~~g~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~ws  275 (721)
                      .+||.+|.++++....+...... .++|||||++|++++....  +...+.....|++||..+++....           
T Consensus        46 ~~~~~~d~~~~~~~~~~~~~~~~-~~a~spDg~~i~~~~~~~~--~~~~g~~d~~v~v~D~~t~~~~~~-----------  111 (368)
T d1mdah_          46 TENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFA--RSAKGKRTDYVEVFDPVTFLPIAD-----------  111 (368)
T ss_dssp             EEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEET--TTTSSSEEEEEEEECTTTCCEEEE-----------
T ss_pred             ceEEEEeCCCCcEEEEEeCCCCC-cceECCCCCEEEEEcccCc--cccccccCCeEEEEECCCCcEeee-----------
Confidence            48999999999887665544333 5689999999999764221  111222346688888877664322           


Q ss_pred             cCCeEEEEeccCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECC
Q 004971          276 DESTLFFHRKSEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLV  355 (721)
Q Consensus       276 ~dg~l~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~  355 (721)
                                           +..+...        ..   ..+.....++||| ||++|++.....    ..+++||++
T Consensus       112 ---------------------i~~p~~~--------~~---~~g~~p~~~a~Sp-DGk~l~va~~~~----~~v~~~d~~  154 (368)
T d1mdah_         112 ---------------------IELPDAP--------RF---SVGPRVHIIGNCA-SSACLLFFLFGS----SAAAGLSVP  154 (368)
T ss_dssp             ---------------------EEETTSC--------SC---CBSCCTTSEEECT-TSSCEEEEECSS----SCEEEEEET
T ss_pred             ---------------------ecCCccc--------ee---cccCCccceEECC-CCCEEEEEeCCC----CeEEEEECC
Confidence                                 1111100        00   1111235789999 999998865332    359999999


Q ss_pred             CCceEEeecccCC-----CCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCC
Q 004971          356 KNKFIELTRFVSP-----KTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKG  430 (721)
Q Consensus       356 tg~~~~l~~~~~~-----~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG  430 (721)
                      +++..........     ......+++++||+.+++.......       ..+..... .   ............++++|
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~-------~~~~~~~~-~---~~~~~~~~~~~~~~~~g  223 (368)
T d1mdah_         155 GASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPA-------AAGIVGAQ-C---TGAQNCSSQAAQANYPG  223 (368)
T ss_dssp             TTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCC-------CCEECCCC-S---CTTSCBCSCCEEETTTT
T ss_pred             CCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCce-------eeeeeecc-c---ccccccceeecccccCc
Confidence            9875443322111     1112234567777766554333331       11111110 0   00011122345667776


Q ss_pred             CEEEEEeCCcEEEEECCCCceEEEe---------------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971          431 DRIAFVEFPGVYVVNSDGSNRRQVY---------------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD  495 (721)
Q Consensus       431 ~~la~~~~~~l~v~d~~~g~~~~l~---------------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~  495 (721)
                       .+++...+.+++++...+....+.               ......++++|+++.+++...............|+.++..
T Consensus       224 -~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~  302 (368)
T d1mdah_         224 -MLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS  302 (368)
T ss_dssp             -EEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred             -EEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECC
Confidence             344555677888888777655443               1233468999999999887653333333445667777776


Q ss_pred             CCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCC
Q 004971          496 DVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEG  556 (721)
Q Consensus       496 ~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~  556 (721)
                      +.   .....+.. ......++|||||+.++|.+.. ++..|++||..+|+.  +..+.-+
T Consensus       303 t~---~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~-~~~~v~v~D~~tgk~--~~~i~~g  356 (368)
T d1mdah_         303 VG---QTSGPISN-GHDSDAIIAAQDGASDNYANSA-GTEVLDIYDAASDQD--QSSVELD  356 (368)
T ss_dssp             SC---CEEECCEE-EEEECEEEECCSSSCEEEEEET-TTTEEEEEESSSCEE--EEECCCC
T ss_pred             CC---cEeEEecC-CCceeEEEECCCCCEEEEEEeC-CCCeEEEEECCCCCE--EEEEECC
Confidence            54   12333332 2356678999999977766643 246899999999985  5556543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.1e-12  Score=132.78  Aligned_cols=320  Identities=11%  Similarity=0.057  Sum_probs=187.5

Q ss_pred             EeecCCCCCccccccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEecc-CC--cceeccCCeEEEEec
Q 004971          209 RRLTPYGVADFSPAVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIVEN-GG--WPCWVDESTLFFHRK  285 (721)
Q Consensus       209 ~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~~~-~~--~~~ws~dg~l~~~~~  285 (721)
                      +.|..|...... .+++||++||.++.+            ..|.+||+.+++..+..... +.  ...|+++  ++++  
T Consensus        10 ~~l~GH~~~V~s-~~~~~g~~l~sgs~D------------g~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s--   72 (342)
T d2ovrb2          10 KVLKGHDDHVIT-CLQFCGNRIVSGSDD------------NTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIIS--   72 (342)
T ss_dssp             EEEECSTTSCEE-EEEEETTEEEEEETT------------SCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEE--
T ss_pred             EEECCcCCceEE-EEEECCCEEEEEeCC------------CeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--cccc--
Confidence            345566555444 588899999987754            35889999998866544322 22  3477776  4442  


Q ss_pred             cCCCCcEEEEEEecCCCcceeccccceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc
Q 004971          286 SEEDDWISVYKVILPQTGLVSTESVSIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF  365 (721)
Q Consensus       286 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~  365 (721)
                      ...++.+.+|......         ...........+...  .. ....+....     .+..+.+|+..+++.......
T Consensus        73 ~s~D~~~~~~~~~~~~---------~~~~~~~~~~~~~~~--~~-~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~  135 (342)
T d2ovrb2          73 GSTDRTLKVWNAETGE---------CIHTLYGHTSTVRCM--HL-HEKRVVSGS-----RDATLRVWDIETGQCLHVLMG  135 (342)
T ss_dssp             EETTSCEEEEETTTTE---------EEEEECCCSSCEEEE--EE-ETTEEEEEE-----TTSEEEEEESSSCCEEEEEEC
T ss_pred             ceeccccccccccccc---------ceecccccceeEeee--ec-ccccccccc-----cceeEEEeecccccceeeeec
Confidence            2237888888432221         222222222222222  22 344444432     334589999988875443321


Q ss_pred             cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEE
Q 004971          366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVV  444 (721)
Q Consensus       366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~  444 (721)
                        ...  ......+....++....++.         +.+.+...................++++++.++..+ ++.|.+|
T Consensus       136 --~~~--~~~~~~~~~~~~~~~~~d~~---------i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~  202 (342)
T d2ovrb2         136 --HVA--AVRCVQYDGRRVVSGAYDFM---------VKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVW  202 (342)
T ss_dssp             --CSS--CEEEEEECSSCEEEEETTSC---------EEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred             --ccc--cceeeccccceeeeecCCCe---------EEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEe
Confidence              111  12233444555555443333         444444333111111122233456778899888874 7899999


Q ss_pred             ECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCC
Q 004971          445 NSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDG  522 (721)
Q Consensus       445 d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg  522 (721)
                      |+..++..... ........+++++++|+..+       .++.+.+|++....     ....+.... .......+++++
T Consensus       203 d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s-------~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  270 (342)
T d2ovrb2         203 DVETGNCIHTLTGHQSLTSGMELKDNILVSGN-------ADSTVKIWDIKTGQ-----CLQTLQGPNKHQSAVTCLQFNK  270 (342)
T ss_dssp             ETTTCCEEEEECCCCSCEEEEEEETTEEEEEE-------TTSCEEEEETTTCC-----EEEEECSTTSCSSCEEEEEECS
T ss_pred             ecccceeeeEecccccceeEEecCCCEEEEEc-------CCCEEEEEeccccc-----ccccccccceeeeceeecccCC
Confidence            99988765444 22223344556677888776       57889999876543     334444332 223335667778


Q ss_pred             CEEEEEEeeCCceeEEEEECCCCcccceEECc-----CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC
Q 004971          523 KWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-----EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG  595 (721)
Q Consensus       523 ~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~  595 (721)
                      ++++..+.   +..|++||+.+++.  +..+.     .+...+..++|+|||..|+.+..++   .....|++||.+-
T Consensus       271 ~~~~s~s~---Dg~i~iwd~~tg~~--i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dG---t~~~~l~~~Df~~  340 (342)
T d2ovrb2         271 NFVITSSD---DGTVKLWDLKTGEF--IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG---TEETKLLVLDFDV  340 (342)
T ss_dssp             SEEEEEET---TSEEEEEETTTCCE--EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS---SSCCEEEEEECCC
T ss_pred             CeeEEEcC---CCEEEEEECCCCCE--EEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCC---CCeeEEEEEeCCC
Confidence            88888886   78899999999885  44443     1234578899999998888877664   2345799999763

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=5.9e-13  Score=137.56  Aligned_cols=298  Identities=6%  Similarity=-0.102  Sum_probs=172.5

Q ss_pred             cCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC-CCCCcce
Q 004971          323 FTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST-REDGNNQ  401 (721)
Q Consensus       323 ~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~-~~~~~~~  401 (721)
                      ...+.++ ||+..++...........||++|.++++.......    .....++|||||+.|++.+...... .-.....
T Consensus        23 ~~~a~~~-~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~----~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~   97 (368)
T d1mdah_          23 CDHGPGA-ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLG----AFLSLAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             BCCCCCC-CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE----CTTCEEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             cccccCC-CCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeC----CCCCcceECCCCCEEEEEcccCccccccccCCe
Confidence            3445677 88876554333333456799999999986544322    1223589999999999977543321 0000133


Q ss_pred             eEEEeccCCCCc--ce-------ecccCCCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe----------ecCce
Q 004971          402 LLLENIKSPLPD--IS-------LFRFDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY----------FKNAF  460 (721)
Q Consensus       402 l~~~~~~~~~~~--~~-------~~~~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~----------~~~~~  460 (721)
                      +.+++..+....  +.       ........++|||||++|++..  .+.+++||+.+++.....          .+...
T Consensus        98 v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (368)
T d1mdah_          98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAAT  177 (368)
T ss_dssp             EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTE
T ss_pred             EEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCce
Confidence            667766544211  11       0111234578999999999874  678999999998754433          12223


Q ss_pred             eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEE
Q 004971          461 STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIM  540 (721)
Q Consensus       461 ~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~  540 (721)
                      .+.+++||+.+++....       .....+....         ..............+.+++..++ ..    ..+++++
T Consensus       178 ~v~~~~Dg~~~~~~~~~-------~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~-~~----~~~v~~~  236 (368)
T d1mdah_         178 HYLGSCPASLAASDLAA-------APAAAGIVGA---------QCTGAQNCSSQAAQANYPGMLVW-AV----ASSILQG  236 (368)
T ss_dssp             EECCCCTTSCEEEECCS-------SCCCCEECCC---------CSCTTSCBCSCCEEETTTTEEEE-CB----SSCCEEE
T ss_pred             EEEEcCCCCEEEEEecC-------Cceeeeeeec---------ccccccccceeecccccCcEEEE-ec----CCCEEEE
Confidence            45556666665554321       1111111000         00111123344567788876543 22    3467777


Q ss_pred             ECCCCcccceEECcCC----------CcCceeeEEccCCCEEEEEEccCCC--CCCceeEEEEecCCCceEEeeecCCCC
Q 004971          541 DAEGGEGYGLHRLTEG----------PWSDTMCNWSPDGEWIAFASDRDNP--GSGSFEMYLIHPNGTGLRKLIQSGSAG  608 (721)
Q Consensus       541 d~~~g~~~~~~~l~~~----------~~~~~~~~~SpDG~~l~~~~~~~~~--~~~~~~i~~~d~~~~~~~~l~~~~~~~  608 (721)
                      +...+...........          ......++++|+++.+++.......  ......|++||..+++......  ...
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~--~~~  314 (368)
T d1mdah_         237 DIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS--NGH  314 (368)
T ss_dssp             ECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE--EEE
T ss_pred             eecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec--CCC
Confidence            7776653111111110          1112457899999988877654321  1234679999999987655433  234


Q ss_pred             CcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          609 RANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       609 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      ....++|||||+.++|.+.....               .|++||+.+++......
T Consensus       315 ~~~~~a~spDG~~~ly~s~~~~~---------------~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         315 DSDAIIAAQDGASDNYANSAGTE---------------VLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             EECEEEECCSSSCEEEEEETTTT---------------EEEEEESSSCEEEEECC
T ss_pred             ceeEEEECCCCCEEEEEEeCCCC---------------eEEEEECCCCCEEEEEE
Confidence            56789999999976666654432               49999999887654333

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=1.2e-12  Score=132.61  Aligned_cols=261  Identities=12%  Similarity=0.083  Sum_probs=154.7

Q ss_pred             CCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccC---CCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971          319 GLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVS---PKTHHLNPFISPDSSRVGYHKCRGGSTR  395 (721)
Q Consensus       319 ~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~---~~~~~~~~~~Spdg~~l~~~~~~~~~~~  395 (721)
                      +.....++||| ||++++.....    +..|.+||+.+++.........   .......++|+||+++++..........
T Consensus        33 ~~~~~~i~~sp-Dg~~l~v~~~~----~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~  107 (337)
T d1pbyb_          33 GPTPMVPMVAP-GGRIAYATVNK----SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL  107 (337)
T ss_dssp             TTCCCCEEECT-TSSEEEEEETT----TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECS
T ss_pred             CCCccEEEECC-CCCEEEEEECC----CCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCccee
Confidence            34567899999 99988765332    3459999999998543322111   1223557899999999988765433210


Q ss_pred             ---CCCcceeEEEeccCCCCc-ceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEe--ecCceeeEEcCCCC
Q 004971          396 ---EDGNNQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVRE  469 (721)
Q Consensus       396 ---~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~  469 (721)
                         ......+.+.+....... ..........++|+|||++++.. ...+.+||..+++.....  ........++|++.
T Consensus       108 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (337)
T d1pbyb_         108 THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVL  186 (337)
T ss_dssp             SCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCC
T ss_pred             eeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEE-cCCcceeeeecCcEEEEeecCCccccceecCCcc
Confidence               001133445554443211 11122234568999999988776 456888999888754433  22333444555555


Q ss_pred             eEEEEecC---------------CCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCc
Q 004971          470 AVVYTSGG---------------PEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGY  534 (721)
Q Consensus       470 ~la~~~~~---------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~  534 (721)
                      .+......               ...........++.++....  ......+...........++|++++++...     
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  259 (337)
T d1pbyb_         187 AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG--EMAMREVRIMDVFYFSTAVNPAKTRAFGAY-----  259 (337)
T ss_dssp             CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC--CEEEEEEEECSSCEEEEEECTTSSEEEEEE-----
T ss_pred             eeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCC--cEEEEEecCCCcceEEEEecccceEEEEcc-----
Confidence            43322110               00000111223334443332  011222333444556678999999887654     


Q ss_pred             eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971          535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI  602 (721)
Q Consensus       535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  602 (721)
                      ..|.+||+.+++.  +..+.. ...+..++|||||++|+.+..++       .|.+||+.+++.....
T Consensus       260 ~~i~v~d~~~~~~--~~~~~~-~~~~~~~~~s~dG~~l~v~~~~~-------~i~v~D~~t~~~v~~i  317 (337)
T d1pbyb_         260 NVLESFDLEKNAS--IKRVPL-PHSYYSVNVSTDGSTVWLGGALG-------DLAAYDAETLEKKGQV  317 (337)
T ss_dssp             SEEEEEETTTTEE--EEEEEC-SSCCCEEEECTTSCEEEEESBSS-------EEEEEETTTCCEEEEE
T ss_pred             ccEEEEECCCCcE--EEEEcC-CCCEEEEEECCCCCEEEEEeCCC-------cEEEEECCCCcEEEEE
Confidence            4799999999885  444433 33457899999999999887664       7999999998766443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.3e-12  Score=129.01  Aligned_cols=307  Identities=12%  Similarity=0.041  Sum_probs=186.7

Q ss_pred             ceEEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEee
Q 004971          311 SIQRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCR  390 (721)
Q Consensus       311 ~~~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~  390 (721)
                      ....+.+|...+.. ++++ +|++|+..+     .++.|++||+.+++.  +..+..|...+..+.|+|+  .|+..+.+
T Consensus         8 ~~~~l~GH~~~V~s-~~~~-~g~~l~sgs-----~Dg~i~vWd~~~~~~--~~~~~~h~~~V~~v~~~~~--~l~s~s~D   76 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQF-CGNRIVSGS-----DDNTLKVWSAVTGKC--LRTLVGHTGGVWSSQMRDN--IIISGSTD   76 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEE-ETTEEEEEE-----TTSCEEEEETTTCCE--EEECCCCSSCEEEEEEETT--EEEEEETT
T ss_pred             cCEEECCcCCceEE-EEEE-CCCEEEEEe-----CCCeEEEEECCCCCE--EEEEeCCCCCEEEEEeCCC--ccccceec
Confidence            34445666544443 5888 999988754     445699999999884  3444566777888899875  66665544


Q ss_pred             CCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe-ecCceeeEEcCCC
Q 004971          391 GGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVR  468 (721)
Q Consensus       391 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg  468 (721)
                      +.         +.+.+..........................+... .+..+.+++..+++..... ..........+..
T Consensus        77 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (342)
T d2ovrb2          77 RT---------LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG  147 (342)
T ss_dssp             SC---------EEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECS
T ss_pred             cc---------ccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecccc
Confidence            43         33333332211111110001111222233344444 4678999999888755444 3333344455566


Q ss_pred             CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCccc
Q 004971          469 EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGY  548 (721)
Q Consensus       469 ~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~  548 (721)
                      ..++..+       .++.+.+|+.....     ....+..+  ......+++|+++|+..+.   +..|++||+..++. 
T Consensus       148 ~~~~~~~-------~d~~i~~~d~~~~~-----~~~~~~~~--~~~~~~~~~~~~~l~s~~~---dg~i~~~d~~~~~~-  209 (342)
T d2ovrb2         148 RRVVSGA-------YDFMVKVWDPETET-----CLHTLQGH--TNRVYSLQFDGIHVVSGSL---DTSIRVWDVETGNC-  209 (342)
T ss_dssp             SCEEEEE-------TTSCEEEEEGGGTE-----EEEEECCC--SSCEEEEEECSSEEEEEET---TSCEEEEETTTCCE-
T ss_pred             ceeeeec-------CCCeEEEeecccce-----eeEEEcCc--ccccccccCCCCEEEEEeC---CCeEEEeeccccee-
Confidence            6666665       46778888765422     33334333  3344677889999998887   78899999998874 


Q ss_pred             ceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEec
Q 004971          549 GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDY  628 (721)
Q Consensus       549 ~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~  628 (721)
                       +..+..+...+.  ++++++++|+.++.++       .|++||+...+.................+++++++++..+.+
T Consensus       210 -~~~~~~~~~~v~--~~~~~~~~l~s~s~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~D  279 (342)
T d2ovrb2         210 -IHTLTGHQSLTS--GMELKDNILVSGNADS-------TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD  279 (342)
T ss_dssp             -EEEECCCCSCEE--EEEEETTEEEEEETTS-------CEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETT
T ss_pred             -eeEeccccccee--EEecCCCEEEEEcCCC-------EEEEEecccccccccccccceeeeceeecccCCCeeEEEcCC
Confidence             555555554444  4455667888888775       899999988876655433122223334556667788777655


Q ss_pred             CCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EEecc-----CCCCCCCceecCC--cCCccc
Q 004971          629 GGISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLTQ-----NSFEDGTPAWGPR--FIRPVD  682 (721)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt~-----~~~~~~~~~~sp~--~l~~~~  682 (721)
                      +                 .|.+||+.+++. +.+..     +...+...+|+|+  +++.+.
T Consensus       280 g-----------------~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~  324 (342)
T d2ovrb2         280 G-----------------TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS  324 (342)
T ss_dssp             S-----------------EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred             C-----------------EEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEe
Confidence            4                 499999988765 44532     3334567888997  444443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=5.3e-13  Score=135.40  Aligned_cols=246  Identities=8%  Similarity=-0.026  Sum_probs=152.7

Q ss_pred             ceEEeCCC-CCcccCceeecC-CCCEEEEEEecCCCCeeeEEEEECCCCceEE-e-----ecccCCCCcccCcEEcCCCC
Q 004971          311 SIQRVTPP-GLHAFTPATSPG-NNKFIAVATRRPTSSYRHIELFDLVKNKFIE-L-----TRFVSPKTHHLNPFISPDSS  382 (721)
Q Consensus       311 ~~~~~~~~-~~~~~~~~~sp~-dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~-l-----~~~~~~~~~~~~~~~Spdg~  382 (721)
                      ....+..+ ...+..++|+|. +|++|+...     .++.|.+||+..++... +     .....+...+..++|+++|+
T Consensus        54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs-----~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  128 (325)
T d1pgua1          54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD-----ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR  128 (325)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEE-----TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS
T ss_pred             ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEe-----CCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCC
Confidence            34455555 345778999981 456766533     45569999987543210 0     11223455677899999999


Q ss_pred             EEEEEEeeCCCCCCCCcceeEEEeccCCCCcceec---ccCCCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe--
Q 004971          383 RVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLF---RFDGSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY--  455 (721)
Q Consensus       383 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~--  455 (721)
                      +|+.......       ..+.+.+...+. .+...   ......++|+|++..++..  .++.+.+|+....+...-.  
T Consensus       129 ~l~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~  200 (325)
T d1pgua1         129 RLCVVGEGRD-------NFGVFISWDSGN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT  200 (325)
T ss_dssp             EEEEEECCSS-------CSEEEEETTTCC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS
T ss_pred             ccceeecccc-------ceEEEEeecccc-cceeeeecccccccccccccccceEEEeecccccccccccccccceeccc
Confidence            9988765444       223344433321 11111   1223447899999875544  3788999998776543322  


Q ss_pred             ----ecCceeeEEcCCC-CeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEc---cCCCEEEE
Q 004971          456 ----FKNAFSTVWDPVR-EAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVS---PDGKWIVF  527 (721)
Q Consensus       456 ----~~~~~~~~~spdg-~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S---pDg~~l~~  527 (721)
                          ...+..++|+||+ +.|+..+       .++.+.+|++....     ....+..+...+....|+   |||++|+.
T Consensus       201 ~~~~~~~v~~v~~~pd~~~~l~s~~-------~d~~i~iwd~~~~~-----~~~~l~~~~~~v~~~~~s~~~~dg~~l~s  268 (325)
T d1pgua1         201 HHKQGSFVRDVEFSPDSGEFVITVG-------SDRKISCFDGKSGE-----FLKYIEDDQEPVQGGIFALSWLDSQKFAT  268 (325)
T ss_dssp             SSCTTCCEEEEEECSTTCCEEEEEE-------TTCCEEEEETTTCC-----EEEECCBTTBCCCSCEEEEEESSSSEEEE
T ss_pred             ccCCCCccEEeeeccccceeccccc-------cccceeeeeecccc-----ccccccccccccccceeeeeccCCCEEEE
Confidence                2346789999985 5555554       57889999764332     456666666555566666   89999998


Q ss_pred             EEeeCCceeEEEEECCCCcccceEECcCCC--cCceeeEEccCC-CEEEEEEccCCCCCCceeEEEEec
Q 004971          528 RSTRTGYKNLYIMDAEGGEGYGLHRLTEGP--WSDTMCNWSPDG-EWIAFASDRDNPGSGSFEMYLIHP  593 (721)
Q Consensus       528 ~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~--~~~~~~~~SpDG-~~l~~~~~~~~~~~~~~~i~~~d~  593 (721)
                      .+.   +..|++||+.+++.  +..+..+.  .....+++.+.+ .+|+.++.++       .|++||+
T Consensus       269 ~s~---D~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg-------~i~vwdl  325 (325)
T d1pgua1         269 VGA---DATIRVWDVTTSKC--VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG-------TLNFYEL  325 (325)
T ss_dssp             EET---TSEEEEEETTTTEE--EEEEECCTTCGGGCEEEEEEEETTEEEEEETTS-------CEEEEET
T ss_pred             EeC---CCeEEEEECCCCCE--EEEEEecCCcccCeEEEEEECCCCEEEEEECCC-------EEEEEEC
Confidence            886   77899999998875  44444332  222334444332 3676666664       8999985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=5.1e-13  Score=132.58  Aligned_cols=260  Identities=10%  Similarity=0.080  Sum_probs=168.6

Q ss_pred             EEeCCCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCC
Q 004971          313 QRVTPPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGG  392 (721)
Q Consensus       313 ~~~~~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~  392 (721)
                      +.+.+|...+..++|+|     |+..+     .++.|.+||+.++.       ..|...+..+.+++++. ++..+.++.
T Consensus         7 ~~l~gH~~~I~~l~~s~-----l~sgs-----~Dg~v~~Wd~~~~~-------~~h~~~V~~~~~~~~~~-~~s~s~D~~   68 (287)
T d1pgua2           7 KTISGHNKGITALTVNP-----LISGS-----YDGRIMEWSSSSMH-------QDHSNLIVSLDNSKAQE-YSSISWDDT   68 (287)
T ss_dssp             EEECCCSSCEEEEETTT-----TEEEE-----TTSCEEETTTTEEE-------CCCCSCEEEEECCSTTC-CEEEETTTE
T ss_pred             EEECCCCCceEEEEECc-----EEEEe-----CCCeEEEEECCCCC-------CCCCCCEEEEEecCCCe-EEEEeeccc
Confidence            44566766777888865     55533     45669999987643       23455666778887654 444443332


Q ss_pred             CCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEEEeecCceeeEEcCCCCeEE
Q 004971          393 STREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVV  472 (721)
Q Consensus       393 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la  472 (721)
                               +.++++...     ..........+++++..++......+.+++...++.............++++++.++
T Consensus        69 ---------v~~w~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (287)
T d1pgua2          69 ---------LKVNGITKH-----EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVA  134 (287)
T ss_dssp             ---------EEETTEEEE-----ECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEE
T ss_pred             ---------ccccccccc-----ccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCccee
Confidence                     333322111     011112335788888877777788899999988875544434445567888999998


Q ss_pred             EEecCCCCCCCCCcEEEEEEEccCCCCccceEEcc-cCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE
Q 004971          473 YTSGGPEFASESSEVDIISINVDDVDGVSAVRRLT-TNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH  551 (721)
Q Consensus       473 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~  551 (721)
                      +...      +.+.+++|.+....     ....+. ........++|+|||++|+..+.   +..|++||..+++.  ..
T Consensus       135 v~~~------~~~~v~~~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~i~d~~~~~~--~~  198 (287)
T d1pgua2         135 VGLE------EGNTIQVFKLSDLE-----VSFDLKTPLRAKPSYISISPSETYIAAGDV---MGKILLYDLQSREV--KT  198 (287)
T ss_dssp             EEET------TTSCEEEEETTEEE-----EEEECSSCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEE--EE
T ss_pred             eecc------ccceeeeeeccccc-----eeeeeeeccCCceeEEEeccCccccccccc---cccccceeeccccc--cc
Confidence            8873      34568888764321     222222 23356778899999999998887   77899999998763  22


Q ss_pred             -ECcCCCcCceeeEEccCC----------CEEEEEEccCCCCCCceeEEEEecCCC-ceEEeeecCCCCCcCCeEECCCC
Q 004971          552 -RLTEGPWSDTMCNWSPDG----------EWIAFASDRDNPGSGSFEMYLIHPNGT-GLRKLIQSGSAGRANHPYFSPDG  619 (721)
Q Consensus       552 -~l~~~~~~~~~~~~SpDG----------~~l~~~~~~~~~~~~~~~i~~~d~~~~-~~~~l~~~~~~~~~~~~~~SpDG  619 (721)
                       .+..+...+..++|+|++          ++|+.++.+.       .|++||+..+ +..... .+|...+..+.|+||+
T Consensus       199 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~-------~i~iw~~~~~~~~~~~~-~~h~~~V~~v~~~~~~  270 (287)
T d1pgua2         199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT-------NIFIYSVKRPMKIIKAL-NAHKDGVNNLLWETPS  270 (287)
T ss_dssp             CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS-------CEEEEESSCTTCCEEET-TSSTTCEEEEEEEETT
T ss_pred             ccccccccccceeeecccccccccccCCCCeeEeecCCC-------eEEEEECCCCCeEEEEe-CCCCCCeEEEEECCCC
Confidence             233445567788888754          5677677664       8999998764 333333 3477788999999987


Q ss_pred             CEEEEEEecC
Q 004971          620 KSIVFTSDYG  629 (721)
Q Consensus       620 ~~l~~~~~~~  629 (721)
                      + |+..+.+.
T Consensus       271 ~-l~s~g~D~  279 (287)
T d1pgua2         271 T-LVSSGADA  279 (287)
T ss_dssp             E-EEEEETTS
T ss_pred             E-EEEEECCC
Confidence            5 66666554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=4.1e-12  Score=128.10  Aligned_cols=279  Identities=8%  Similarity=-0.034  Sum_probs=166.1

Q ss_pred             CCCCcccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCce-EEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971          317 PPGLHAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKF-IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTR  395 (721)
Q Consensus       317 ~~~~~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~-~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~  395 (721)
                      .+...+..++||| ||++|+..+     .++.|++||+.++.. ..+.....+...+..++|+|++..++++....+   
T Consensus         9 ~h~d~I~~l~fsp-~~~~L~s~s-----~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~---   79 (342)
T d1yfqa_           9 APKDYISDIKIIP-SKSLLLITS-----WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG---   79 (342)
T ss_dssp             CCSSCEEEEEEEG-GGTEEEEEE-----TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS---
T ss_pred             CCCCCEEEEEEeC-CCCEEEEEE-----CCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccc---
Confidence            4455678999999 999998854     345699999876542 233333346777888999998765554443322   


Q ss_pred             CCCcceeEEEeccCCCCcceecccC---CCCceeCcCCCEEEEEe-CCcEEEEECCCCce--EEEe-------ecCceee
Q 004971          396 EDGNNQLLLENIKSPLPDISLFRFD---GSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNR--RQVY-------FKNAFST  462 (721)
Q Consensus       396 ~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~--~~l~-------~~~~~~~  462 (721)
                           .+.++++.............   .....+.+++..++..+ +..+.+||+..+..  ....       .......
T Consensus        80 -----~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (342)
T d1yfqa_          80 -----EILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIF  154 (342)
T ss_dssp             -----CEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEE
T ss_pred             -----ceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeee
Confidence                 25555554432221111111   11224456666666664 77899998754332  1111       1123356


Q ss_pred             EEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcce-EEccCCCEEEEEEeeCCceeEEEEE
Q 004971          463 VWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFP-SVSPDGKWIVFRSTRTGYKNLYIMD  541 (721)
Q Consensus       463 ~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~SpDg~~l~~~s~~~g~~~l~~~d  541 (721)
                      .+.+++..++..+       .++.+.+|++.....  ................. .++.++..++..+.   +..+.+++
T Consensus       155 ~~~~~~~~~~~~~-------~d~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---dg~~~v~~  222 (342)
T d1yfqa_         155 TMDTNSSRLIVGM-------NNSQVQWFRLPLCED--DNGTIEESGLKYQIRDVALLPKEQEGYACSSI---DGRVAVEF  222 (342)
T ss_dssp             EEEECSSEEEEEE-------STTEEEEEESSCCTT--CCCEEEECSCSSCEEEEEECSGGGCEEEEEET---TSEEEEEE
T ss_pred             eeeccCCceeeec-------CCCcEEEEecccCcc--cceeeeecccccceeeeEeecCCCCEEEeecC---CCeEEEEE
Confidence            7788888888876       567888888765432  00111111111222223 34456666766665   55677776


Q ss_pred             CCCCcccc----eEE---------CcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCC
Q 004971          542 AEGGEGYG----LHR---------LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAG  608 (721)
Q Consensus       542 ~~~g~~~~----~~~---------l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~  608 (721)
                      ........    ...         ...+...+..++|+|++++|+.++.++       .|++||+.+++......  ...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg-------~v~vWD~~~~~~l~~~~--~~~  293 (342)
T d1yfqa_         223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG-------IISCWNLQTRKKIKNFA--KFN  293 (342)
T ss_dssp             CCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS-------CEEEEETTTTEEEEECC--CCS
T ss_pred             ecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCC-------EEEEEECCCCcEEEEec--CCC
Confidence            65432100    000         011223456789999999999998875       89999999886544332  223


Q ss_pred             CcCCeEECCCCCEEEEEEecCC
Q 004971          609 RANHPYFSPDGKSIVFTSDYGG  630 (721)
Q Consensus       609 ~~~~~~~SpDG~~l~~~~~~~~  630 (721)
                      .....+|+|+|+.|++++.++.
T Consensus       294 ~~~~~~~s~~~~~l~~a~sdd~  315 (342)
T d1yfqa_         294 EDSVVKIACSDNILCLATSDDT  315 (342)
T ss_dssp             SSEEEEEEECSSEEEEEEECTH
T ss_pred             CCEEEEEEeCCCEEEEEEcCCc
Confidence            4556889999999998887753

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=9.6e-11  Score=121.77  Aligned_cols=175  Identities=11%  Similarity=0.067  Sum_probs=117.2

Q ss_pred             CEEEEEe-CCcEEEEECCCCc------------eEEEe---------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEE
Q 004971          431 DRIAFVE-FPGVYVVNSDGSN------------RRQVY---------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVD  488 (721)
Q Consensus       431 ~~la~~~-~~~l~v~d~~~g~------------~~~l~---------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~  488 (721)
                      .+++..+ ++.+.+|++....            ...+.         ...+..++|+||| .|+..+       .++.++
T Consensus       137 ~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs-------~Dg~i~  208 (393)
T d1sq9a_         137 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF-------NNGTVQ  208 (393)
T ss_dssp             EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC-------TTSEEE
T ss_pred             cEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEe-------CCCcEE
Confidence            4555553 7889999874221            11111         2235678999998 666554       578899


Q ss_pred             EEEEEccCCC-CccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-------------
Q 004971          489 IISINVDDVD-GVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-------------  554 (721)
Q Consensus       489 i~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-------------  554 (721)
                      ||++...... .......+..+...+..++|||||++|+..+.......|.+||+++++.  +..+.             
T Consensus       209 iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~--~~~l~~~~~~~~~~~~~~  286 (393)
T d1sq9a_         209 ISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER--IGSLSVPTHSSQASLGEF  286 (393)
T ss_dssp             EEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE--EEEECBC--------CCB
T ss_pred             EEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccccccee--eeeeccccccccceeeee
Confidence            9976542200 0001112334556778899999999999988744445689999998875  33332             


Q ss_pred             CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcC----CeEECCCCCEEE
Q 004971          555 EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRAN----HPYFSPDGKSIV  623 (721)
Q Consensus       555 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~----~~~~SpDG~~l~  623 (721)
                      .+...+..++|+|||++|+.++.+.       .|.+||+.+++...... +|...+.    .++|+|+|..++
T Consensus       287 gH~~~V~~l~fspd~~~l~S~s~D~-------~v~vWd~~~g~~~~~l~-gH~~~v~~~~~~~~~~~~~~~~~  351 (393)
T d1sq9a_         287 AHSSWVMSLSFNDSGETLCSAGWDG-------KLRFWDVKTKERITTLN-MHCDDIEIEEDILAVDEHGDSLA  351 (393)
T ss_dssp             SBSSCEEEEEECSSSSEEEEEETTS-------EEEEEETTTTEEEEEEE-CCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             cccCceeeeccCCCCCeeEEECCCC-------EEEEEECCCCCEEEEEC-CcCCcccCCccEEEECCCCCEEE
Confidence            3445678899999999999998886       89999999998776654 3554443    578999998764

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=6.5e-11  Score=123.05  Aligned_cols=205  Identities=11%  Similarity=0.042  Sum_probs=133.5

Q ss_pred             CCcEEEEECCCCce----E--EEe-------ecCceeeEEcCCC-----CeEEEEecCCCCCCCCCcEEEEEEEccCCC-
Q 004971          438 FPGVYVVNSDGSNR----R--QVY-------FKNAFSTVWDPVR-----EAVVYTSGGPEFASESSEVDIISINVDDVD-  498 (721)
Q Consensus       438 ~~~l~v~d~~~g~~----~--~l~-------~~~~~~~~~spdg-----~~la~~~~~~~~~~~~~~~~i~~~~~~~~~-  498 (721)
                      ++.+.+|++.....    .  .+.       ......+.|.+++     .+++.++       .++.+.+|++...... 
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~dg~i~vw~~~~~~~~~  160 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD-------VKGTTYIWKFHPFADES  160 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE-------TTSCEEEEEEESSSSHH
T ss_pred             CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEc-------CCCcEEEEEeecCCccc
Confidence            67888888653321    1  111       1223456676654     4555554       5788999998754320 


Q ss_pred             --------Cccce-EEc---ccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEE------CcCCCcCc
Q 004971          499 --------GVSAV-RRL---TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHR------LTEGPWSD  560 (721)
Q Consensus       499 --------~~~~~-~~l---~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~------l~~~~~~~  560 (721)
                              ..... ...   .........++|+||| +|+..+.   +..|++||+.+++.  +..      +..+...+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~---Dg~i~iwd~~~~~~--~~~~~~~~~l~~h~~~V  234 (393)
T d1sq9a_         161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN---NGTVQISELSTLRP--LYNFESQHSMINNSNSI  234 (393)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT---TSEEEEEETTTTEE--EEEEECCC---CCCCCE
T ss_pred             ceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeC---CCcEEEEeeccccc--ccccccccccccccceE
Confidence                    00000 011   1112345568999998 6666555   77899999998874  222      23455667


Q ss_pred             eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee------------cCCCCCcCCeEECCCCCEEEEEEec
Q 004971          561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ------------SGSAGRANHPYFSPDGKSIVFTSDY  628 (721)
Q Consensus       561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~------------~~~~~~~~~~~~SpDG~~l~~~~~~  628 (721)
                      ..++|||||+.|+.++.+.    ....|.+||+.+++......            .+|...+..++|+|||++|+..+.+
T Consensus       235 ~~l~~spdg~~l~sgs~D~----t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D  310 (393)
T d1sq9a_         235 RSVKFSPQGSLLAIAHDSN----SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD  310 (393)
T ss_dssp             EEEEECSSTTEEEEEEEET----TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred             EEcccccccceeeeecCCC----CcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCC
Confidence            8999999999999998773    33468999999887554432            1356678889999999999887776


Q ss_pred             CCCcCCCCCCCCCCCCCccEEEEEcCCCCe-EEeccCCCCCC----CceecCC
Q 004971          629 GGISAEPISTPHQYQPYGEIFKIKLDGSDL-KRLTQNSFEDG----TPAWGPR  676 (721)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~lt~~~~~~~----~~~~sp~  676 (721)
                      .                 .|.+||+++++. ..|..|...+.    .++|+|.
T Consensus       311 ~-----------------~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~  346 (393)
T d1sq9a_         311 G-----------------KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH  346 (393)
T ss_dssp             S-----------------EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTT
T ss_pred             C-----------------EEEEEECCCCCEEEEECCcCCcccCCccEEEECCC
Confidence            5                 499999998865 46666665443    4677775

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.31  E-value=6.1e-10  Score=114.07  Aligned_cols=176  Identities=13%  Similarity=0.126  Sum_probs=102.9

Q ss_pred             CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc--ccCCCCCcceEEccCCCEEEEEEeeCCce
Q 004971          458 NAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL--TTNGKNNAFPSVSPDGKWIVFRSTRTGYK  535 (721)
Q Consensus       458 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~SpDg~~l~~~s~~~g~~  535 (721)
                      .+..+.|+|||+++++...      ....+.+|.++..+.  ......+  ........+++|+|||+++++..+.  ..
T Consensus       146 h~h~v~~sPdG~~l~v~d~------g~d~v~~~~~~~~g~--~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~--~~  215 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADL------TANKLWTHRKLASGE--VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA--GN  215 (365)
T ss_dssp             CEEEEEECTTSSEEEEEET------TTTEEEEEEECTTSC--EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT--TT
T ss_pred             cceEEEECCCCCEEEEeeC------CCCEEEEEEccCCCc--eeeccceeecCCCCceEEEEECCCCceEEEeccC--CC
Confidence            4568899999999998863      345677777665442  0111111  1223456778999999998888764  45


Q ss_pred             eEEEEECCCCcccceEE-----CcCC------------CcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC-Cc
Q 004971          536 NLYIMDAEGGEGYGLHR-----LTEG------------PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG-TG  597 (721)
Q Consensus       536 ~l~~~d~~~g~~~~~~~-----l~~~------------~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~-~~  597 (721)
                      .|.+|+.+++.......     +...            ......+.++|||++|+.+....+. .....|..++++. +.
T Consensus       216 ~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~-~~~~~i~~~~~~~~g~  294 (365)
T d1jofa_         216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF-ELQGYIAGFKLRDCGS  294 (365)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST-TSCCEEEEEEECTTSC
T ss_pred             EEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCC-ccceEEEEEEecCCCc
Confidence            67777776554211111     1100            0112467899999999887643211 1222455555533 22


Q ss_pred             eEEee---e-cCCCCCcCCeEECC-CCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEE
Q 004971          598 LRKLI---Q-SGSAGRANHPYFSP-DGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKR  660 (721)
Q Consensus       598 ~~~l~---~-~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  660 (721)
                      ..+..   . .........++++| ||++|+++...++                .|.+|++++.....
T Consensus       295 ~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~----------------~v~v~~~~~~~l~~  346 (365)
T d1jofa_         295 IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEG----------------WLEIYRWKDEFLHR  346 (365)
T ss_dssp             EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSC----------------EEEEEEEETTEEEE
T ss_pred             eeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCC----------------eEEEEEEeCCcCcE
Confidence            22211   1 11234567799998 8999988876654                37777665554433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.28  E-value=3.8e-12  Score=131.00  Aligned_cols=305  Identities=11%  Similarity=0.011  Sum_probs=162.1

Q ss_pred             eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC-------C--C
Q 004971          326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST-------R--E  396 (721)
Q Consensus       326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~-------~--~  396 (721)
                      ..+| ||++|+....    .+.+|.++|+++.+..++.... ........+++|||+++++........       .  .
T Consensus        78 ~gtp-DGr~lfV~d~----~~~rVavIDl~t~k~~~ii~iP-~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~  151 (441)
T d1qnia2          78 DGRY-DGKYLFINDK----ANTRVARIRLDIMKTDKITHIP-NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSL  151 (441)
T ss_dssp             TTEE-EEEEEEEEET----TTTEEEEEETTTTEEEEEEECT-TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCG
T ss_pred             cccC-CCCEEEEEcC----CCCEEEEEECCCCcEeeEEecC-CCCCccceEEeccCCEEEEEeccCCcccccCccccccc
Confidence            3479 9999877432    2345999999999876654321 233455789999999766544332210       0  0


Q ss_pred             CCc-ceeEEEeccCCCCc-ceecccCCCCceeCcCCCEEEEEe--CCcEEEEECCCCc-eEEEe-ecCceeeEEcCCCCe
Q 004971          397 DGN-NQLLLENIKSPLPD-ISLFRFDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSN-RRQVY-FKNAFSTVWDPVREA  470 (721)
Q Consensus       397 ~~~-~~l~~~~~~~~~~~-~~~~~~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~-~~~l~-~~~~~~~~~spdg~~  470 (721)
                      ... ..+...+..+.... ..........+.++|||+++++..  ...+..++..+.. ...+. ........++|||++
T Consensus       152 ~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~  231 (441)
T d1qnia2         152 DNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNF  231 (441)
T ss_dssp             GGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCC
T ss_pred             ccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCE
Confidence            000 11112222221110 011223455679999999888773  2233333333332 22222 233345667889987


Q ss_pred             EEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcc---
Q 004971          471 VVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEG---  547 (721)
Q Consensus       471 la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~---  547 (721)
                      +++.        .++...|... ...    .....+..+ .....+.+||||++++++...  ...+.+||+++-..   
T Consensus       232 ~~v~--------~~~v~vvd~~-~~~----~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~--~~tvsv~d~~k~~~~~~  295 (441)
T d1qnia2         232 KTIG--------DSKVPVVDGR-GES----EFTRYIPVP-KNPHGLNTSPDGKYFIANGKL--SPTVSVIAIDKLDDLFE  295 (441)
T ss_dssp             BCCT--------TCCCCEEECS-SSC----SSEEEECCB-SSCCCEEECTTSCEEEEECTT--SSBEEEEEGGGHHHHTT
T ss_pred             EEeC--------CCCcEEEEcc-cCC----ceEEEEeCC-CCccCceECCCCCEEEEeCCc--CCcEEEEEeehhhhHhh
Confidence            6542        1222222211 111    133444443 357789999999999887653  56899999754210   


Q ss_pred             ------cceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC-------C---ceEEee----ecCCC
Q 004971          548 ------YGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG-------T---GLRKLI----QSGSA  607 (721)
Q Consensus       548 ------~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~-------~---~~~~l~----~~~~~  607 (721)
                            ..+..-........+-+|+++|.  +|++..     ...+|..|+++.       .   ......    +.+|.
T Consensus       296 ~~~~~~~~~~~~~~~glgplh~~fd~~g~--~yts~~-----~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~  368 (441)
T d1qnia2         296 DKIELRDTIVAEPELGLGPLHTTFDGRGN--AYTTLF-----IDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHN  368 (441)
T ss_dssp             TSSCGGGGEEECCBCCSCEEEEEECSSSE--EEEEET-----TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEE
T ss_pred             ccCCcceEEEeecccccCcccceecCCce--EEEccc-----ccceEEEeccchhhhhhccCCCceeEeccccccCCCCC
Confidence                  00111111111224458999885  344432     224899999741       1   121111    12344


Q ss_pred             CCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          608 GRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       608 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      ......+++||||||+..+.-+..++-+ .+|.   .+..-.++|+.|.+++.|.+
T Consensus       369 ~~~~~~t~~pdGk~l~s~~k~s~dr~~~-~g~~---~~~~~q~~~i~~~~~~~~~~  420 (441)
T d1qnia2         369 HASLTESRDADGKWLVVLSKFSKDRFLP-VGPL---HPENDQLIDISGEEMKLVHD  420 (441)
T ss_dssp             EETTTTSTTCCCCEEEEEESCCGGGSCC-CSSS---CCEEEEEEECSSSSCEEEEE
T ss_pred             ccccccccCCCCcEEEecCccccccCcC-CCCC---CCccceeEEecCCeEEEEec
Confidence            4566788999999999886544322111 1111   11235667999888888876

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8.4e-10  Score=108.06  Aligned_cols=254  Identities=12%  Similarity=0.039  Sum_probs=151.1

Q ss_pred             eeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEE
Q 004971          326 ATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLE  405 (721)
Q Consensus       326 ~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~  405 (721)
                      ++++ ||++|+..+     .++.|++||+.+++...  .+..|...+..  ++++++.|+..+.++.         +.++
T Consensus        20 c~~~-d~~~l~sgs-----~Dg~i~vWd~~~~~~~~--~l~~H~~~V~~--v~~~~~~l~s~s~D~~---------i~~~   80 (293)
T d1p22a2          20 CLQY-DDQKIVSGL-----RDNTIKIWDKNTLECKR--ILTGHTGSVLC--LQYDERVIITGSSDST---------VRVW   80 (293)
T ss_dssp             EEEC-CSSEEEEEE-----SSSCEEEEESSSCCEEE--EECCCSSCEEE--EECCSSEEEEEETTSC---------EEEE
T ss_pred             EEEE-cCCEEEEEe-----CCCeEEEEECCCCcEEE--EEecCCCCEee--eecccceeeccccccc---------cccc
Confidence            5788 999988754     45669999999988543  33455666654  4557888887665554         5555


Q ss_pred             eccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEE-e---ecCceeeEEcCCCCeEEEEecCCCC
Q 004971          406 NIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQV-Y---FKNAFSTVWDPVREAVVYTSGGPEF  480 (721)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l-~---~~~~~~~~~spdg~~la~~~~~~~~  480 (721)
                      ++..+...............+.+....++.. ....+.+|+......... .   .....-....+....++..+     
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s-----  155 (293)
T d1p22a2          81 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSAS-----  155 (293)
T ss_dssp             ESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEE-----
T ss_pred             ccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceeccccccccc-----
Confidence            5554422222211112223444445555555 577889999876653221 1   11111222333444555554     


Q ss_pred             CCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCc
Q 004971          481 ASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD  560 (721)
Q Consensus       481 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~  560 (721)
                        .++.+.+|++....     ....+......+  ..+++++..|+....   +..|++||+.+++.  +......... 
T Consensus       156 --~d~~i~~~d~~~~~-----~~~~~~~~~~~v--~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~--~~~~~~~~~~-  220 (293)
T d1p22a2         156 --GDRTIKVWNTSTCE-----FVRTLNGHKRGI--ACLQYRDRLVVSGSS---DNTIRLWDIECGAC--LRVLEGHEEL-  220 (293)
T ss_dssp             --TTSEEEEEETTTCC-----EEEEEECCSSCE--EEEEEETTEEEEEET---TSCEEEEETTTCCE--EEEECCCSSC-
T ss_pred             --CCCceeeecCCCCc-----EEEEEccccccc--ccccCCCCeEEEecC---CCEEEEEeccccee--eeeeccccee-
Confidence              46777777764432     344444443333  345556788888776   67899999998774  4434333332 


Q ss_pred             eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC---------ceEEeeecCCCCCcCCeEECCCCCEEEEEEecC
Q 004971          561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT---------GLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYG  629 (721)
Q Consensus       561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~---------~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~  629 (721)
                       -..++++++.|+.+..++       .|++||+.++         ...+... +|...+..++|  |+++|+..+.++
T Consensus       221 -v~~~~~~~~~l~sg~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~-~H~~~V~~v~~--d~~~l~s~s~Dg  287 (293)
T d1p22a2         221 -VRCIRFDNKRIVSGAYDG-------KIKVWDLVAALDPRAPAGTLCLRTLV-EHSGRVFRLQF--DEFQIVSSSHDD  287 (293)
T ss_dssp             -EEEEECCSSEEEEEETTS-------CEEEEEHHHHTSTTSCTTTTEEEEEC-CCSSCCCCEEE--CSSCEEECCSSS
T ss_pred             -eeeccccceEEEEEcCCC-------EEEEEECCCCccccccCCceeeEEec-CCCCCEEEEEE--cCCEEEEEecCC
Confidence             346788999999888775       7999997432         2222222 36777888888  567777766554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.20  E-value=4.5e-10  Score=112.63  Aligned_cols=274  Identities=14%  Similarity=0.045  Sum_probs=160.4

Q ss_pred             cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCC--ccee---cccCCCCceeCcCCCEE-EEEe-C
Q 004971          366 VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLP--DISL---FRFDGSFPSFSPKGDRI-AFVE-F  438 (721)
Q Consensus       366 ~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~---~~~~~~~~~~SpDG~~l-a~~~-~  438 (721)
                      ..|...+..++|||||++|+..+.++.         +.++++.....  .+..   .......++|+|++..+ +..+ +
T Consensus         8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~---------v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d   78 (342)
T d1yfqa_           8 QAPKDYISDIKIIPSKSLLLITSWDGS---------LTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ   78 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSE---------EEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT
T ss_pred             CCCCCCEEEEEEeCCCCEEEEEECCCe---------EEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc
Confidence            556777889999999999998776554         44445443322  1111   22234457899886654 4443 7


Q ss_pred             CcEEEEECCCCceEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC--CC
Q 004971          439 PGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG--KN  512 (721)
Q Consensus       439 ~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~--~~  512 (721)
                      +.+.+|++..+......    ........+.+++..++..+       .++.+.+|++..... .......+....  ..
T Consensus        79 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~wd~~~~~~-~~~~~~~~~~~~~~~~  150 (342)
T d1yfqa_          79 GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS-------WDGLIEVIDPRNYGD-GVIAVKNLNSNNTKVK  150 (342)
T ss_dssp             SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEE-------TTSEEEEECHHHHTT-BCEEEEESCSSSSSSC
T ss_pred             cceeeeecccccccccccccccccccccccccccccccccc-------cccccceeecccccc-ceeeecccccccccce
Confidence            88999999877654443    22233455666777777765       467888887754432 000111111111  22


Q ss_pred             CcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceE-ECcCCCcCceeeE-EccCCCEEEEEEccCCCCCCceeEEE
Q 004971          513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLH-RLTEGPWSDTMCN-WSPDGEWIAFASDRDNPGSGSFEMYL  590 (721)
Q Consensus       513 ~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~-~l~~~~~~~~~~~-~SpDG~~l~~~~~~~~~~~~~~~i~~  590 (721)
                      .....+.+++..++..+.   +..|.+|++..++..... ............. ++.++..++....++       .+.+
T Consensus       151 ~~~~~~~~~~~~~~~~~~---d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-------~~~v  220 (342)
T d1yfqa_         151 NKIFTMDTNSSRLIVGMN---NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG-------RVAV  220 (342)
T ss_dssp             CCEEEEEECSSEEEEEES---TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS-------EEEE
T ss_pred             eeeeeeeccCCceeeecC---CCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCC-------eEEE
Confidence            334577889999988887   778999999876532111 1111222223333 455677777777664       5666


Q ss_pred             EecCCCce-------EEeee-------cCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971          591 IHPNGTGL-------RKLIQ-------SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       591 ~d~~~~~~-------~~l~~-------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~  656 (721)
                      |+......       .....       ..+...+..++|+|+|++|+..+.++                 .|++||++++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg-----------------~v~vWD~~~~  283 (342)
T d1yfqa_         221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG-----------------IISCWNLQTR  283 (342)
T ss_dssp             EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS-----------------CEEEEETTTT
T ss_pred             EEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCC-----------------EEEEEECCCC
Confidence            66543311       11110       01223345689999999998877765                 3999999987


Q ss_pred             CeE-EeccCCCCCCCceecC--CcCCccccc
Q 004971          657 DLK-RLTQNSFEDGTPAWGP--RFIRPVDVE  684 (721)
Q Consensus       657 ~~~-~lt~~~~~~~~~~~sp--~~l~~~~~~  684 (721)
                      +.. ++..+ ......+|+|  .+++.+..+
T Consensus       284 ~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sd  313 (342)
T d1yfqa_         284 KKIKNFAKF-NEDSVVKIACSDNILCLATSD  313 (342)
T ss_dssp             EEEEECCCC-SSSEEEEEEECSSEEEEEEEC
T ss_pred             cEEEEecCC-CCCEEEEEEeCCCEEEEEEcC
Confidence            653 44432 2233345555  566665544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.18  E-value=3.9e-10  Score=115.76  Aligned_cols=234  Identities=11%  Similarity=-0.023  Sum_probs=124.4

Q ss_pred             EEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC-CCcceecccCCCCceeC
Q 004971          349 IELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP-LPDISLFRFDGSFPSFS  427 (721)
Q Consensus       349 l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~S  427 (721)
                      +..+|.++.+.......   ......+.++|||+++++.+......        ...+..+. ...............++
T Consensus       158 ~~~iD~~t~~v~~qI~v---~~~p~~v~~spdGk~a~vt~~nse~~--------~~id~~t~~~~d~i~v~n~p~~~~~~  226 (441)
T d1qnia2         158 FTAIDAETMDVAWQVIV---DGNLDNTDADYTGKYATSTCYNSERA--------VDLAGTMRNDRDWVVVFNVERIAAAV  226 (441)
T ss_dssp             EEEEETTTCSEEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCC--------SSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred             EEeecCccceeeEEEec---CCCccceEECCCCCEEEEEecCCCce--------EEEeccCcceEEEEEeCCccceEEEe
Confidence            45678777653221111   34567899999999998876654321        00011111 00000011112234678


Q ss_pred             cCCCEEEEEeCCcEEEEECCCCc-eEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccC-----CCCc
Q 004971          428 PKGDRIAFVEFPGVYVVNSDGSN-RRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDD-----VDGV  500 (721)
Q Consensus       428 pDG~~la~~~~~~l~v~d~~~g~-~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~  500 (721)
                      |||++++....+.+.+.+..... ...|. ......+.+||||+++++..      ..++.+.+|++..-.     ....
T Consensus       227 ~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~------~~~~tvsv~d~~k~~~~~~~~~~~  300 (441)
T d1qnia2         227 KAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANG------KLSPTVSVIAIDKLDDLFEDKIEL  300 (441)
T ss_dssp             HTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEEC------TTSSBEEEEEGGGHHHHTTTSSCG
T ss_pred             cCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeC------CcCCcEEEEEeehhhhHhhccCCc
Confidence            99986654444444444444433 34555 45677899999999999886      357888888875311     0000


Q ss_pred             -cceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCC-------Cccc-ceEEC-----cCCCcCceeeEEc
Q 004971          501 -SAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG-------GEGY-GLHRL-----TEGPWSDTMCNWS  566 (721)
Q Consensus       501 -~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~-------g~~~-~~~~l-----~~~~~~~~~~~~S  566 (721)
                       .....-....-...+.+|+++|..  +.+. .-+.++..|++..       .+.. .+..+     ..+.......+++
T Consensus       301 ~~~~~~~~~~glgplh~~fd~~g~~--yts~-~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~  377 (441)
T d1qnia2         301 RDTIVAEPELGLGPLHTTFDGRGNA--YTTL-FIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRD  377 (441)
T ss_dssp             GGGEEECCBCCSCEEEEEECSSSEE--EEEE-TTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTT
T ss_pred             ceEEEeecccccCcccceecCCceE--EEcc-cccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccC
Confidence             011111111122344589998853  3332 1267899999741       1110 12222     1222234456789


Q ss_pred             cCCCEEEEEEc---cCCC---CCCceeEEEEecCCCceEEee
Q 004971          567 PDGEWIAFASD---RDNP---GSGSFEMYLIHPNGTGLRKLI  602 (721)
Q Consensus       567 pDG~~l~~~~~---~~~~---~~~~~~i~~~d~~~~~~~~l~  602 (721)
                      |||+||+....   +...   +.....-.++|+.+.+.+.+.
T Consensus       378 pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~~~~~~  419 (441)
T d1qnia2         378 ADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEEMKLVH  419 (441)
T ss_dssp             CCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSSSSCEEEE
T ss_pred             CCCcEEEecCccccccCcCCCCCCCccceeEEecCCeEEEEe
Confidence            99999998843   2111   123356677888776666554

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=8.7e-09  Score=100.56  Aligned_cols=255  Identities=13%  Similarity=0.014  Sum_probs=160.8

Q ss_pred             EEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEe-CCcEEEEECCCCceEEE
Q 004971          376 FISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQV  454 (721)
Q Consensus       376 ~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l  454 (721)
                      ++++||++|+..+.++.         +.++++.++....+.......-.++++|+++|+..+ ++.+.+|++..+.....
T Consensus        20 c~~~d~~~l~sgs~Dg~---------i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~   90 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNT---------IKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNT   90 (293)
T ss_dssp             EEECCSSEEEEEESSSC---------EEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred             EEEEcCCEEEEEeCCCe---------EEEEECCCCcEEEEEecCCCCEeeeecccceeeccccccccccccccccccccc
Confidence            47789999998777665         455566544221111111222235677888888875 78899999988876554


Q ss_pred             e-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCC
Q 004971          455 Y-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG  533 (721)
Q Consensus       455 ~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g  533 (721)
                      . ........+.+....++...       ..+...+|.......  ......+..+...+.  .+.+....++..+.   
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~--~~~~~~~~~~~~s~---  156 (293)
T d1p22a2          91 LIHHCEAVLHLRFNNGMMVTCS-------KDRSIAVWDMASPTD--ITLRRVLVGHRAAVN--VVDFDDKYIVSASG---  156 (293)
T ss_dssp             ECCCCSCEEEEECCTTEEEEEE-------TTSCEEEEECSSSSC--CEEEEEECCCSSCEE--EEEEETTEEEEEET---
T ss_pred             ccccccccccccccccceeecc-------cccceeEeecccccc--ccccccccccccccc--cceecccccccccC---
Confidence            4 33344455666666676665       457788887665432  011122222322332  33444556666665   


Q ss_pred             ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCe
Q 004971          534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHP  613 (721)
Q Consensus       534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~  613 (721)
                      +..|.+||..+++.  +..+......+..  +++++..|+.+..++       .|++||+.+.+....... +.  ....
T Consensus       157 d~~i~~~d~~~~~~--~~~~~~~~~~v~~--~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~-~~--~~v~  222 (293)
T d1p22a2         157 DRTIKVWNTSTCEF--VRTLNGHKRGIAC--LQYRDRLVVSGSSDN-------TIRLWDIECGACLRVLEG-HE--ELVR  222 (293)
T ss_dssp             TSEEEEEETTTCCE--EEEEECCSSCEEE--EEEETTEEEEEETTS-------CEEEEETTTCCEEEEECC-CS--SCEE
T ss_pred             CCceeeecCCCCcE--EEEEccccccccc--ccCCCCeEEEecCCC-------EEEEEecccceeeeeecc-cc--eeee
Confidence            67899999998875  4555544443333  445677888888775       799999998876655432 22  2234


Q ss_pred             EECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC----------CeEEeccCCCCCCCceecCCcCCcccc
Q 004971          614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS----------DLKRLTQNSFEDGTPAWGPRFIRPVDV  683 (721)
Q Consensus       614 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~----------~~~~lt~~~~~~~~~~~sp~~l~~~~~  683 (721)
                      .+++++.+|+..+.++                 .|++||+.+.          ..+.+..|...+...+|++..|+....
T Consensus       223 ~~~~~~~~l~sg~~dg-----------------~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~  285 (293)
T d1p22a2         223 CIRFDNKRIVSGAYDG-----------------KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSH  285 (293)
T ss_dssp             EEECCSSEEEEEETTS-----------------CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCS
T ss_pred             eccccceEEEEEcCCC-----------------EEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEec
Confidence            5788899888776654                 3889986432          246777788888889999887777664


Q ss_pred             c
Q 004971          684 E  684 (721)
Q Consensus       684 ~  684 (721)
                      |
T Consensus       286 D  286 (293)
T d1p22a2         286 D  286 (293)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=5.3e-10  Score=110.14  Aligned_cols=258  Identities=10%  Similarity=0.000  Sum_probs=157.0

Q ss_pred             EEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eC
Q 004971          360 IELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EF  438 (721)
Q Consensus       360 ~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~  438 (721)
                      +.+..+.+|...+..++|+|    |+..+.++.         +.++++.....   ........+.+++++. ++.. .+
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~---------v~~Wd~~~~~~---~h~~~V~~~~~~~~~~-~~s~s~D   66 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGR---------IMEWSSSSMHQ---DHSNLIVSLDNSKAQE-YSSISWD   66 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSC---------EEETTTTEEEC---CCCSCEEEEECCSTTC-CEEEETT
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCe---------EEEEECCCCCC---CCCCCEEEEEecCCCe-EEEEeec
Confidence            34445567788888888987    666555444         44454432210   1111123356777664 4444 46


Q ss_pred             CcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEE
Q 004971          439 PGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSV  518 (721)
Q Consensus       439 ~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  518 (721)
                      ..+.+|++...+    ....+....+++++..++...        +..+.+|.  ....   .....+..   .....++
T Consensus        67 ~~v~~w~~~~~~----~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~--~~~~---~~~~~~~~---~~~~~~~  126 (287)
T d1pgua2          67 DTLKVNGITKHE----FGSQPKVASANNDGFTAVLTN--------DDDLLILQ--SFTG---DIIKSVRL---NSPGSAV  126 (287)
T ss_dssp             TEEEETTEEEEE----CSSCEEEEEECSSSEEEEEET--------TSEEEEEE--TTTC---CEEEEEEC---SSCEEEE
T ss_pred             cccccccccccc----cccceeeeeeccCCceEEEee--------cccceeee--ccce---eeeeeccc---cceeeee
Confidence            778887653211    123445677888887777654        23444443  3222   12233322   2234578


Q ss_pred             ccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971          519 SPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG  597 (721)
Q Consensus       519 SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~  597 (721)
                      +|+++.+++....  ...+.+|++.+.+.  ...+. .....+..++|+|||++|+.+..++       .|++||+.+++
T Consensus       127 ~~~~~~~~v~~~~--~~~v~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg-------~i~i~d~~~~~  195 (287)
T d1pgua2         127 SLSQNYVAVGLEE--GNTIQVFKLSDLEV--SFDLKTPLRAKPSYISISPSETYIAAGDVMG-------KILLYDLQSRE  195 (287)
T ss_dssp             EECSSEEEEEETT--TSCEEEEETTEEEE--EEECSSCCSSCEEEEEECTTSSEEEEEETTS-------CEEEEETTTTE
T ss_pred             eccCcceeeeccc--cceeeeeeccccce--eeeeeeccCCceeEEEeccCccccccccccc-------cccceeecccc
Confidence            8999999888753  24688898875442  22332 3345578899999999999998875       79999998876


Q ss_pred             eEEeeecCCCCCcCCeEECCCC----------CEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC-CC-eEEeccCC
Q 004971          598 LRKLIQSGSAGRANHPYFSPDG----------KSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG-SD-LKRLTQNS  665 (721)
Q Consensus       598 ~~~l~~~~~~~~~~~~~~SpDG----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~-~~~lt~~~  665 (721)
                      ........|...+..++|+|++          .+|+..+.+.                 .|++||+.. ++ .+.+..|.
T Consensus       196 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~-----------------~i~iw~~~~~~~~~~~~~~h~  258 (287)
T d1pgua2         196 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT-----------------NIFIYSVKRPMKIIKALNAHK  258 (287)
T ss_dssp             EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS-----------------CEEEEESSCTTCCEEETTSST
T ss_pred             cccccccccccccceeeecccccccccccCCCCeeEeecCCC-----------------eEEEEECCCCCeEEEEeCCCC
Confidence            5443323366677888898765          4555544443                 499999865 33 44555677


Q ss_pred             CCCCCceecCC-cCCccc
Q 004971          666 FEDGTPAWGPR-FIRPVD  682 (721)
Q Consensus       666 ~~~~~~~~sp~-~l~~~~  682 (721)
                      ..+...+|+|+ .+..+.
T Consensus       259 ~~V~~v~~~~~~~l~s~g  276 (287)
T d1pgua2         259 DGVNNLLWETPSTLVSSG  276 (287)
T ss_dssp             TCEEEEEEEETTEEEEEE
T ss_pred             CCeEEEEECCCCEEEEEE
Confidence            77888999986 344443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.10  E-value=7.8e-08  Score=97.95  Aligned_cols=163  Identities=11%  Similarity=0.042  Sum_probs=94.5

Q ss_pred             CceeCcCCCEEEEEe--CCcEEEEECCC-CceEEEe-------ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEE
Q 004971          423 FPSFSPKGDRIAFVE--FPGVYVVNSDG-SNRRQVY-------FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISI  492 (721)
Q Consensus       423 ~~~~SpDG~~la~~~--~~~l~v~d~~~-g~~~~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~  492 (721)
                      .+.|+|||+++++..  ...|++++... +......       ......++|+|||+++++...      .++.+.+|++
T Consensus       149 ~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e------~~~~V~v~~~  222 (365)
T d1jofa_         149 GMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME------AGNRICEYVI  222 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET------TTTEEEEEEE
T ss_pred             EEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEecc------CCCEEEEEEe
Confidence            468999999988884  56788887643 3332221       235678999999999988873      5678888888


Q ss_pred             EccCCCCccceEEc--ccCC------------CCCcceEEccCCCEEEEEEeeCC---ceeEEEEECCC-CcccceEEC-
Q 004971          493 NVDDVDGVSAVRRL--TTNG------------KNNAFPSVSPDGKWIVFRSTRTG---YKNLYIMDAEG-GEGYGLHRL-  553 (721)
Q Consensus       493 ~~~~~~~~~~~~~l--~~~~------------~~~~~~~~SpDg~~l~~~s~~~g---~~~l~~~d~~~-g~~~~~~~l-  553 (721)
                      +............+  ....            .....+.++|||++|++......   ...|..+++.. +.......+ 
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~  302 (365)
T d1jofa_         223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS  302 (365)
T ss_dssp             CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred             cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEee
Confidence            76543100111111  1100            11234689999999987754321   22355555442 221111111 


Q ss_pred             --cCCCcCceeeEEcc-CCCEEEEEEccCCCCCCceeEEEEecCCCc
Q 004971          554 --TEGPWSDTMCNWSP-DGEWIAFASDRDNPGSGSFEMYLIHPNGTG  597 (721)
Q Consensus       554 --~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~i~~~d~~~~~  597 (721)
                        .........++++| ||++|+++....    +  .|.+|+++...
T Consensus       303 ~~~~~G~~p~~i~~~p~~G~~l~va~~~s----~--~v~v~~~~~~~  343 (365)
T d1jofa_         303 PTPTSGGHSNAVSPCPWSDEWMAITDDQE----G--WLEIYRWKDEF  343 (365)
T ss_dssp             ECSSCCTTCCCEEECTTCTTEEEEECSSS----C--EEEEEEEETTE
T ss_pred             EEEcCCCCccEEEecCCCCCEEEEEeCCC----C--eEEEEEEeCCc
Confidence              11112236789998 899998887653    3  56666554443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.98  E-value=4.1e-07  Score=94.73  Aligned_cols=261  Identities=11%  Similarity=0.027  Sum_probs=159.2

Q ss_pred             cCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCC-------C
Q 004971          323 FTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGST-------R  395 (721)
Q Consensus       323 ~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~-------~  395 (721)
                      ...++|| ||++++|.....|++...|+++|+++|+.......   ......++|++|++.|+|...+....       .
T Consensus       128 ~~~~~Sp-d~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~---~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~  203 (430)
T d1qfma1         128 RGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE---RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (430)
T ss_dssp             EEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE---EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             cceEecC-CCCEEEEEeccccCchheeEEeccCcceecccccc---cccccceEEcCCCCEEEEEEeccccCcccccccc
Confidence            3467899 99999999999999999999999999985432211   22335789999999999987654211       1


Q ss_pred             CCCcceeEEEeccCCCCc-ceeccc-C-CC---CceeCcCCCEEEEEe------CCcEEEEECCCCc--------eEEEe
Q 004971          396 EDGNNQLLLENIKSPLPD-ISLFRF-D-GS---FPSFSPKGDRIAFVE------FPGVYVVNSDGSN--------RRQVY  455 (721)
Q Consensus       396 ~~~~~~l~~~~~~~~~~~-~~~~~~-~-~~---~~~~SpDG~~la~~~------~~~l~v~d~~~g~--------~~~l~  455 (721)
                      .....+++...+.++... ...+.. . ..   ....|.||+++++..      ...+++.++....        ...+.
T Consensus       204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  283 (430)
T d1qfma1         204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI  283 (430)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred             cCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEee
Confidence            111246778777665332 122221 1 11   135689999987651      2357788765322        12222


Q ss_pred             ecCce-eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEccc-CCCCCcceEEccCCCEEEEEEeeCC
Q 004971          456 FKNAF-STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTT-NGKNNAFPSVSPDGKWIVFRSTRTG  533 (721)
Q Consensus       456 ~~~~~-~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpDg~~l~~~s~~~g  533 (721)
                      ..... ......+|..+++.++.     ...+..|+.++.+.... ...+.+.. .......-.++..+.+|++....++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~Tn~-----~a~~~~L~~~~~~~~~~-~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~  357 (430)
T d1qfma1         284 DNFEGEYDYVTNEGTVFTFKTNR-----HSPNYRLINIDFTDPEE-SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV  357 (430)
T ss_dssp             CSSSSCEEEEEEETTEEEEEECT-----TCTTCEEEEEETTBCCG-GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred             cccccceEEEecCCceeecccCc-----ccccceeEEecCCCCcc-ccceEEecccCcceeeeEEEEECCEEEEEEEcCC
Confidence            21111 11233466677776642     34567788887764311 12233333 3333333455566778888877778


Q ss_pred             ceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971          534 YKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR  599 (721)
Q Consensus       534 ~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~  599 (721)
                      ..+|+++++.+++.   ..+. ...+.+..+..+++...|.+....-   .....+|.+|+.+++..
T Consensus       358 ~~~l~v~~~~~~~~---~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~---~tP~~~y~~Dl~t~~~~  418 (430)
T d1qfma1         358 KNTLQLHDLATGAL---LKIFPLEVGSVVGYSGQKKDTEIFYQFTSF---LSPGIIYHCDLTKEELE  418 (430)
T ss_dssp             EEEEEEEETTTCCE---EEEECCCSSEEEEEECCTTCSEEEEEEECS---SCCCEEEEEETTSSSCC
T ss_pred             EeEEEEEECCCCcE---EEecCCCCceEeeccCCCCCCEEEEEEcCC---CCCCeEEEEECCCCCcc
Confidence            88999999998874   3332 2333344455567777777665442   24568999999988643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.88  E-value=1.9e-07  Score=93.07  Aligned_cols=217  Identities=9%  Similarity=0.084  Sum_probs=136.0

Q ss_pred             CceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCC
Q 004971          423 FPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDV  497 (721)
Q Consensus       423 ~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~  497 (721)
                      .++|.++|+ |+++.  .+.|+.++.++++.....   ......+++++||+.++....     .......++.++..+.
T Consensus        44 G~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~-----~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          44 GLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLG-----DFKSTGGIFAATENGD  117 (319)
T ss_dssp             EEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECT-----TSSSCCEEEEECTTSC
T ss_pred             eCEECCCCC-EEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecC-----CCccceeEEEEcCCCc
Confidence            479999997 77774  778999999888754443   345678999999975544321     1234556777776654


Q ss_pred             CCccceEEcccCC---CCCcceEEccCCCEEEEEEeeC----CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCC
Q 004971          498 DGVSAVRRLTTNG---KNNAFPSVSPDGKWIVFRSTRT----GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE  570 (721)
Q Consensus       498 ~~~~~~~~l~~~~---~~~~~~~~SpDg~~l~~~s~~~----g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~  570 (721)
                          ....+....   ......++.|+|+ |++.....    ....+++++.+++.   +..+.......+.++|+|||+
T Consensus       118 ----~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~---~~~~~~~~~~pnGia~s~dg~  189 (319)
T d2dg1a1         118 ----NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT---VTPIIQNISVANGIALSTDEK  189 (319)
T ss_dssp             ----SCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC---EEEEEEEESSEEEEEECTTSS
T ss_pred             ----eeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccce---eEEEeeccceeeeeeeccccc
Confidence                333333222   2345578999997 55554321    24479999988766   444443333346799999999


Q ss_pred             EEEEEEccCCCCCCceeEEEEecCCC--ceEEe----e-ecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCC
Q 004971          571 WIAFASDRDNPGSGSFEMYLIHPNGT--GLRKL----I-QSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQ  643 (721)
Q Consensus       571 ~l~~~~~~~~~~~~~~~i~~~d~~~~--~~~~l----~-~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~  643 (721)
                      .|+++....      ..|++++++..  .....    . ..........+++.++|+ |+++....+             
T Consensus       190 ~lyvad~~~------~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g-------------  249 (319)
T d2dg1a1         190 VLWVTETTA------NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQG-------------  249 (319)
T ss_dssp             EEEEEEGGG------TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTT-------------
T ss_pred             eEEEecccC------CceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcCCC-------------
Confidence            998887653      37999987543  11111    1 111112345688999998 444444433             


Q ss_pred             CCccEEEEEcCCCCeEEeccC------CCCCCCceecCC
Q 004971          644 PYGEIFKIKLDGSDLKRLTQN------SFEDGTPAWGPR  676 (721)
Q Consensus       644 ~~~~l~~~d~~~~~~~~lt~~------~~~~~~~~~sp~  676 (721)
                         .|+++|.+|..+.++.-.      .....+++|.|.
T Consensus       250 ---~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~  285 (319)
T d2dg1a1         250 ---RVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPG  285 (319)
T ss_dssp             ---EEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred             ---EEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCC
Confidence               499999887766665421      123456777764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.86  E-value=2.7e-07  Score=91.62  Aligned_cols=245  Identities=11%  Similarity=0.071  Sum_probs=139.5

Q ss_pred             cccCceeecCCCCEEEEEEecC---CCCeeeEEEEECCCCceEEeecccC--CCCcccCcEEcCCCCEEEEEEeeCCCCC
Q 004971          321 HAFTPATSPGNNKFIAVATRRP---TSSYRHIELFDLVKNKFIELTRFVS--PKTHHLNPFISPDSSRVGYHKCRGGSTR  395 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~---g~~~~~l~l~dl~tg~~~~l~~~~~--~~~~~~~~~~Spdg~~l~~~~~~~~~~~  395 (721)
                      ....++|.| ||+ |++.....   .....+|+.+|.++++.........  .......+++++||+.|++....     
T Consensus        19 g~EGpa~d~-dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~-----   91 (314)
T d1pjxa_          19 GAEGPVFDK-NGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-----   91 (314)
T ss_dssp             TCEEEEECT-TSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----
T ss_pred             CCeEeEEeC-CCC-EEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC-----
Confidence            346789999 997 55543321   1113469999999887544432111  11224468899999988775422     


Q ss_pred             CCCcceeEEEeccCCCCcceeccc------CCCCceeCcCCCEEEEEe-----------------CCcEEEEECCCCceE
Q 004971          396 EDGNNQLLLENIKSPLPDISLFRF------DGSFPSFSPKGDRIAFVE-----------------FPGVYVVNSDGSNRR  452 (721)
Q Consensus       396 ~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~SpDG~~la~~~-----------------~~~l~v~d~~~g~~~  452 (721)
                          ..+...+..+....+.....      ....+++.++|+ |++..                 .+.||.++.++....
T Consensus        92 ----~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~  166 (314)
T d1pjxa_          92 ----LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQ  166 (314)
T ss_dssp             ----TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEE
T ss_pred             ----CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeecCceeE
Confidence                23555555443221111111      123468899995 44541                 135788877654333


Q ss_pred             EEe-ecCceeeEEcCCCC----eEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC----CCCcceEEccCCC
Q 004971          453 QVY-FKNAFSTVWDPVRE----AVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG----KNNAFPSVSPDGK  523 (721)
Q Consensus       453 ~l~-~~~~~~~~~spdg~----~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~SpDg~  523 (721)
                      ... ......++|+|+++    +|+++.      ...+.+..|+++.++.  ....+.+....    .....+++.++|+
T Consensus       167 ~~~~~~~pNGi~~~~d~d~~~~~lyv~d------~~~~~i~~~d~~~~g~--~~~~~~~~~~~~~~~~~pdGiavD~~Gn  238 (314)
T d1pjxa_         167 VDTAFQFPNGIAVRHMNDGRPYQLIVAE------TPTKKLWSYDIKGPAK--IENKKVWGHIPGTHEGGADGMDFDEDNN  238 (314)
T ss_dssp             EEEEESSEEEEEEEECTTSCEEEEEEEE------TTTTEEEEEEEEETTE--EEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred             eeCCcceeeeeEECCCCCcceeEEEEEe------ecccceEEeeccCccc--cceeeEEEEccccccccceeeEEecCCc
Confidence            332 23345688998875    566653      2344555555554331  11111121111    2234578999998


Q ss_pred             EEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCC
Q 004971          524 WIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGT  596 (721)
Q Consensus       524 ~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~  596 (721)
                       |+++...  ...|+++|.++++.  ...+.........++|.||++.|+++....      ..|+++++...
T Consensus       239 -lyVa~~~--~g~I~~~dp~~g~~--~~~i~~p~~~~t~~afg~d~~~lyVt~~~~------g~i~~~~~~~~  300 (314)
T d1pjxa_         239 -LLVANWG--SSHIEVFGPDGGQP--KMRIRCPFEKPSNLHFKPQTKTIFVTEHEN------NAVWKFEWQRN  300 (314)
T ss_dssp             -EEEEEET--TTEEEEECTTCBSC--SEEEECSSSCEEEEEECTTSSEEEEEETTT------TEEEEEECSSC
T ss_pred             -EEEEEcC--CCEEEEEeCCCCEE--EEEEECCCCCEEEEEEeCCCCEEEEEECCC------CcEEEEECCCC
Confidence             4444332  56899999998874  333333223457899999999998887653      28999887543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.85  E-value=1.4e-07  Score=93.60  Aligned_cols=253  Identities=12%  Similarity=0.084  Sum_probs=147.0

Q ss_pred             ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecc------cCCCCceeCcCCCEEEEEe-CCcEEEE
Q 004971          372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFR------FDGSFPSFSPKGDRIAFVE-FPGVYVV  444 (721)
Q Consensus       372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~SpDG~~la~~~-~~~l~v~  444 (721)
                      ..+++|.|||+ |+++......... ...+|+..+..++........      .....+++++||..|++.. ...|.++
T Consensus        20 ~EGpa~d~dG~-ly~~~~~~~~~~~-~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          20 AEGPVFDKNGD-FYIVAPEVEVNGK-PAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             CEEEEECTTSC-EEEEETTCEETTE-ECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CeEeEEeCCCC-EEEEECccccccc-cCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            34688999997 4443322211000 003466666655432222111      1123478999998877774 5679999


Q ss_pred             ECCCCceEEEe---ec----CceeeEEcCCCCeEEEEecCCC-------CCCCCCcEEEEEEEccCCCCccceEEcccCC
Q 004971          445 NSDGSNRRQVY---FK----NAFSTVWDPVREAVVYTSGGPE-------FASESSEVDIISINVDDVDGVSAVRRLTTNG  510 (721)
Q Consensus       445 d~~~g~~~~l~---~~----~~~~~~~spdg~~la~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~  510 (721)
                      +.+++....+.   .+    ....+++.++|+ |+++.....       .......-.||.++.++     ....+...-
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-----~~~~~~~~~  171 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-----QMIQVDTAF  171 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-----CEEEEEEEE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeecC-----ceeEeeCCc
Confidence            98877654433   11    245689999995 455432110       11123456788888765     333333322


Q ss_pred             CCCcceEEccCCC----EEEEEEeeCCceeEEEEECCCC-cccc---eEECcCC-CcCceeeEEccCCCEEEEEEccCCC
Q 004971          511 KNNAFPSVSPDGK----WIVFRSTRTGYKNLYIMDAEGG-EGYG---LHRLTEG-PWSDTMCNWSPDGEWIAFASDRDNP  581 (721)
Q Consensus       511 ~~~~~~~~SpDg~----~l~~~s~~~g~~~l~~~d~~~g-~~~~---~~~l~~~-~~~~~~~~~SpDG~~l~~~~~~~~~  581 (721)
                      .....++|+||++    +|++...  ....|+++++... ....   ...+... ......+++.++|+ |+++....  
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~--  246 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGS--  246 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETT--
T ss_pred             ceeeeeEECCCCCcceeEEEEEee--cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-EEEEEcCC--
Confidence            3445689999876    5665543  2568998886533 2111   1122211 12235688999998 44444322  


Q ss_pred             CCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe
Q 004971          582 GSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL  658 (721)
Q Consensus       582 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  658 (721)
                          ..|+++|.++++....... ......+++|.||++.|+++....+                .||.+++.-.-.
T Consensus       247 ----g~I~~~dp~~g~~~~~i~~-p~~~~t~~afg~d~~~lyVt~~~~g----------------~i~~~~~~~~G~  302 (314)
T d1pjxa_         247 ----SHIEVFGPDGGQPKMRIRC-PFEKPSNLHFKPQTKTIFVTEHENN----------------AVWKFEWQRNGK  302 (314)
T ss_dssp             ----TEEEEECTTCBSCSEEEEC-SSSCEEEEEECTTSSEEEEEETTTT----------------EEEEEECSSCBC
T ss_pred             ----CEEEEEeCCCCEEEEEEEC-CCCCEEEEEEeCCCCEEEEEECCCC----------------cEEEEECCCCCh
Confidence                2899999988875443332 2345678999999999988776554                599999765433

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.85  E-value=3.8e-07  Score=89.55  Aligned_cols=228  Identities=15%  Similarity=0.089  Sum_probs=146.7

Q ss_pred             CcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceEE
Q 004971          374 NPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRRQ  453 (721)
Q Consensus       374 ~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~~  453 (721)
                      ++.|.+....|+++...+        .+|+..+..++...+...+.....+++.+||+ |+++....|+++|.++++.+.
T Consensus        22 gp~wd~~~~~l~wvDi~~--------~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~-l~va~~~gl~~~d~~tg~~~~   92 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILE--------RELHELHLASGRKTVHALPFMGSALAKISDSK-QLIASDDGLFLRDTATGVLTL   92 (295)
T ss_dssp             EEEEETTTTEEEEEEGGG--------TEEEEEETTTTEEEEEECSSCEEEEEEEETTE-EEEEETTEEEEEETTTCCEEE
T ss_pred             CCeEECCCCEEEEEECCC--------CEEEEEECCCCeEEEEECCCCcEEEEEecCCC-EEEEEeCccEEeecccceeeE
Confidence            588999888898875444        35777777766444444444455677888885 445567789999999999877


Q ss_pred             Eee-------cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEE
Q 004971          454 VYF-------KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIV  526 (721)
Q Consensus       454 l~~-------~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~  526 (721)
                      +..       ....+....|+|+..+.....   ....+...+|++...      ....+...-.....++|+||++.++
T Consensus        93 l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~---~~~~~~g~l~~~~~g------~~~~~~~~~~~~Ng~~~s~d~~~l~  163 (295)
T d2ghsa1          93 HAELESDLPGNRSNDGRMHPSGALWIGTMGR---KAETGAGSIYHVAKG------KVTKLFADISIPNSICFSPDGTTGY  163 (295)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEET---TCCTTCEEEEEEETT------EEEEEEEEESSEEEEEECTTSCEEE
T ss_pred             EeeeecCCCcccceeeEECCCCCEEEEeccc---cccccceeEeeecCC------cEEEEeeccCCcceeeecCCCceEE
Confidence            751       134578899999754443321   122345677777542      4444443333556789999999999


Q ss_pred             EEEeeCCceeEEEEECCCC--c----ccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEE
Q 004971          527 FRSTRTGYKNLYIMDAEGG--E----GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRK  600 (721)
Q Consensus       527 ~~s~~~g~~~l~~~d~~~g--~----~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~  600 (721)
                      +....  ...||.++++..  .    ................+++..+|. |.++....      ..|+++|.++.....
T Consensus       164 ~~dt~--~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~------g~V~~~dp~G~~~~~  234 (295)
T d2ghsa1         164 FVDTK--VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGE------GAVDRYDTDGNHIAR  234 (295)
T ss_dssp             EEETT--TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETT------TEEEEECTTCCEEEE
T ss_pred             Eeecc--cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC-EEeeeeCC------CceEEecCCCcEeeE
Confidence            88754  567888876532  1    111122223333456788999997 44444332      279999987655444


Q ss_pred             eeecCCCCCcCCeEEC-CCCCEEEEEEecCC
Q 004971          601 LIQSGSAGRANHPYFS-PDGKSIVFTSDYGG  630 (721)
Q Consensus       601 l~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~  630 (721)
                      +..  ......+++|- ||++.|++++...+
T Consensus       235 i~l--P~~~~T~~~FGG~d~~~LyvTta~~~  263 (295)
T d2ghsa1         235 YEV--PGKQTTCPAFIGPDASRLLVTSAREH  263 (295)
T ss_dssp             EEC--SCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             ecC--CCCceEEEEEeCCCCCEEEEEECCcC
Confidence            432  23456788884 89999999887654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.84  E-value=1.3e-06  Score=86.88  Aligned_cols=247  Identities=12%  Similarity=0.089  Sum_probs=144.7

Q ss_pred             cCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCccee--cccCCCCceeCcCCCEEEEEe-----CCcEEEEE
Q 004971          373 LNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISL--FRFDGSFPSFSPKGDRIAFVE-----FPGVYVVN  445 (721)
Q Consensus       373 ~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~SpDG~~la~~~-----~~~l~v~d  445 (721)
                      .+++|.++|+ |+++....        .+|+..+..+.......  .......+++++||+.++...     ...+...+
T Consensus        43 EG~~~D~~G~-Ly~~D~~~--------g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~  113 (319)
T d2dg1a1          43 EGLNFDRQGQ-LFLLDVFE--------GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  113 (319)
T ss_dssp             EEEEECTTSC-EEEEETTT--------CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             EeCEECCCCC-EEEEECCC--------CEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEc
Confidence            4688999986 76654322        34666655444211111  112233578999997554431     34577777


Q ss_pred             CCCCceEEEe-----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEcc
Q 004971          446 SDGSNRRQVY-----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSP  520 (721)
Q Consensus       446 ~~~g~~~~l~-----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp  520 (721)
                      ..++....+.     ......+.+.++|+ |+++....  ......-.+|.++.++.    ..+.+...-.....++|+|
T Consensus       114 ~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~--~~~~~~g~v~~~~~dg~----~~~~~~~~~~~pnGia~s~  186 (319)
T d2dg1a1         114 ENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRG--YSTNPLGGVYYVSPDFR----TVTPIIQNISVANGIALST  186 (319)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCC--BTTBCCEEEEEECTTSC----CEEEEEEEESSEEEEEECT
T ss_pred             CCCceeeeeccCCCcccCCcceeEEeccc-eeeccccc--ccccCcceeEEEecccc----eeEEEeeccceeeeeeecc
Confidence            7777765544     12345688999997 55553211  11234556888887664    4455544334556789999


Q ss_pred             CCCEEEEEEeeCCceeEEEEECCCC-ccc-ce-EE---CcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971          521 DGKWIVFRSTRTGYKNLYIMDAEGG-EGY-GL-HR---LTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN  594 (721)
Q Consensus       521 Dg~~l~~~s~~~g~~~l~~~d~~~g-~~~-~~-~~---l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~  594 (721)
                      ||+.|++....  ..+|++++++.. ... .. ..   ..........+++.++|+ |+++....      ..|.+++.+
T Consensus       187 dg~~lyvad~~--~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~------g~V~~~~p~  257 (319)
T d2dg1a1         187 DEKVLWVTETT--ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQ------GRVLVFNKR  257 (319)
T ss_dssp             TSSEEEEEEGG--GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETT------TEEEEECTT
T ss_pred             ccceEEEeccc--CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcCC------CEEEEECCC
Confidence            99999888753  458999987532 110 00 01   111122235689999998 55554432      289999986


Q ss_pred             CCceEEeeecC----CCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCC
Q 004971          595 GTGLRKLIQSG----SAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDG  655 (721)
Q Consensus       595 ~~~~~~l~~~~----~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  655 (721)
                      +.....+....    +.....+++|.|++..++.++.+....           ..+.||.++...
T Consensus       258 G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-----------~~g~l~~~~~~~  311 (319)
T d2dg1a1         258 GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMG-----------GGSMLYTVNGFA  311 (319)
T ss_dssp             SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGT-----------CCEEEEEEECSS
T ss_pred             CcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcC-----------CceeEEEEeCCC
Confidence            65444443211    122456889999998888777643211           124588887644

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.83  E-value=2.8e-06  Score=88.18  Aligned_cols=301  Identities=12%  Similarity=0.002  Sum_probs=173.9

Q ss_pred             CCCEEEEEEecCCCCeeeEEEEECCCCceEEeecc----cCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEe
Q 004971          331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRF----VSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLEN  406 (721)
Q Consensus       331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~----~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~  406 (721)
                      .|.+.+|.....+.....++......++...+...    .+.........+|||++++++....++...    ..+++.+
T Consensus        82 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~Spd~~~la~s~d~~G~e~----~~l~v~D  157 (430)
T d1qfma1          82 KGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDW----VTIKFMK  157 (430)
T ss_dssp             ETTEEEEEEECSSCSSCEEEEESSSSSCCEEEECGGGGCSSSCEEEEEEEECTTSSEEEEEEEETTCSC----EEEEEEE
T ss_pred             eCCEEEEEEecCCCccceEEeccccCCCeeeecchhhhcccccceecceEecCCCCEEEEEeccccCch----heeEEec
Confidence            55555554444333344455444444444333221    111222345689999999999887776432    5678888


Q ss_pred             ccCCCCc-ceecccCCCCceeCcCCCEEEEEe-----------------CCcEEEEECCCCce--EEEee---c--Ccee
Q 004971          407 IKSPLPD-ISLFRFDGSFPSFSPKGDRIAFVE-----------------FPGVYVVNSDGSNR--RQVYF---K--NAFS  461 (721)
Q Consensus       407 ~~~~~~~-~~~~~~~~~~~~~SpDG~~la~~~-----------------~~~l~v~d~~~g~~--~~l~~---~--~~~~  461 (721)
                      +.++... ..........++|++|++.|+|..                 ...++.+.+.+...  ..+..   .  ....
T Consensus       158 l~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~  237 (430)
T d1qfma1         158 VDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG  237 (430)
T ss_dssp             TTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             cCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEe
Confidence            8776321 111222335689999999999872                 12588888876543  34441   1  2334


Q ss_pred             eEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCC----ccceEEcccCCCCCcceEEccCCCEEEEEEeeC-Ccee
Q 004971          462 TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDG----VSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRT-GYKN  536 (721)
Q Consensus       462 ~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~-g~~~  536 (721)
                      ...++|++++++....    .......+|.++......    ......+.......... ...+|..+++.++.+ .+.+
T Consensus       238 ~~~s~d~~~l~i~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Tn~~a~~~~  312 (430)
T d1qfma1         238 AELSDDGRYVLLSIRE----GCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYR  312 (430)
T ss_dssp             EEECTTSCEEEEEEEC----SSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCE
T ss_pred             eeccCCcceeeEEeec----cCCccEEEEEeeCCCcccccccccceeEeecccccceEE-EecCCceeecccCcccccce
Confidence            6679999998876531    234566788887654210    00112222222122222 334566777777655 3568


Q ss_pred             EEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEE
Q 004971          537 LYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYF  615 (721)
Q Consensus       537 l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~  615 (721)
                      |...+++.......+.+. ........-.++..+.+|++...+.    +...|++++..+++...+... ..+.+.....
T Consensus       313 L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~----~~~~l~v~~~~~~~~~~~~~~-~~~sv~~~~~  387 (430)
T d1qfma1         313 LINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD----VKNTLQLHDLATGALLKIFPL-EVGSVVGYSG  387 (430)
T ss_dssp             EEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET----TEEEEEEEETTTCCEEEEECC-CSSEEEEEEC
T ss_pred             eEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcC----CEeEEEEEECCCCcEEEecCC-CCceEeeccC
Confidence            999998876533233443 3333333334455567888777663    778999999999988777543 3344444555


Q ss_pred             CCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCe
Q 004971          616 SPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDL  658 (721)
Q Consensus       616 SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  658 (721)
                      +++...+.+....-             ..++.+|.+|+++++.
T Consensus       388 ~~~~~~~~~~~ss~-------------~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         388 QKKDTEIFYQFTSF-------------LSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             CTTCSEEEEEEECS-------------SCCCEEEEEETTSSSC
T ss_pred             CCCCCEEEEEEcCC-------------CCCCeEEEEECCCCCc
Confidence            66777776654332             2246799999998854

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.79  E-value=3.4e-07  Score=90.42  Aligned_cols=228  Identities=12%  Similarity=-0.020  Sum_probs=129.8

Q ss_pred             cccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEE-eCCcEEEEECCCC
Q 004971          371 HHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGS  449 (721)
Q Consensus       371 ~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g  449 (721)
                      .+.+++++|||+ |+++.. ..       .+|+..+..+....+.........+++++||+.++.. ....++.++..+.
T Consensus        29 ~~e~iAv~pdG~-l~vt~~-~~-------~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~   99 (302)
T d2p4oa1          29 FLENLASAPDGT-IFVTNH-EV-------GEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS   99 (302)
T ss_dssp             CEEEEEECTTSC-EEEEET-TT-------TEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred             CcCCEEECCCCC-EEEEeC-CC-------CEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccc
Confidence            355689999997 444333 22       3567666554433333333334557999999855444 4667777776543


Q ss_pred             --ceEEEe----ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccC---------CCCCc
Q 004971          450 --NRRQVY----FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTN---------GKNNA  514 (721)
Q Consensus       450 --~~~~l~----~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~---------~~~~~  514 (721)
                        ....+.    ......+.+.++|+.++..         .....+|.++..+.    ........         .....
T Consensus       100 ~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~---------~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  166 (302)
T d2p4oa1         100 DGTVETLLTLPDAIFLNGITPLSDTQYLTAD---------SYRGAIWLIDVVQP----SGSIWLEHPMLARSNSESVFPA  166 (302)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSSSEEEEEE---------TTTTEEEEEETTTT----EEEEEEECGGGSCSSTTCCSCS
T ss_pred             ccceeeccccCCccccceeEEccCCCEEeec---------cccccceeeeccCC----cceeEecCCccceeeccCcccc
Confidence              344443    2345678899998654432         23446677766553    22211111         11111


Q ss_pred             ceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecC
Q 004971          515 FPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPN  594 (721)
Q Consensus       515 ~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~  594 (721)
                      .-.+++|+..+++....  ...|++++.....................+++++||+ |+++....      ..|++++.+
T Consensus       167 ~ngi~~~~~~l~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~~~~------~~V~~i~p~  237 (302)
T d2p4oa1         167 ANGLKRFGNFLYVSNTE--KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATHIY------NSVVRIAPD  237 (302)
T ss_dssp             EEEEEEETTEEEEEETT--TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECBTT------CCEEEECTT
T ss_pred             cccccccCCceeeecCC--CCeEEeccccccccccccccccCCCCCcceEECCCCC-EEEEEcCC------CcEEEECCC
Confidence            22455677888877653  5689999987643211111111122345799999998 55555432      279999987


Q ss_pred             CCceEEeeecCCCCCcCCeEE---CCCCCEEEEEEecC
Q 004971          595 GTGLRKLIQSGSAGRANHPYF---SPDGKSIVFTSDYG  629 (721)
Q Consensus       595 ~~~~~~l~~~~~~~~~~~~~~---SpDG~~l~~~~~~~  629 (721)
                      ++................++|   ++|++.||+.+...
T Consensus       238 G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         238 RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCCC
Confidence            654333322112233567889   78999998877654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.4e-06  Score=82.10  Aligned_cols=249  Identities=13%  Similarity=0.059  Sum_probs=158.3

Q ss_pred             EEEEEeCCcEEEEECCCCceEEEe--ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEE-ccc
Q 004971          432 RIAFVEFPGVYVVNSDGSNRRQVY--FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRR-LTT  508 (721)
Q Consensus       432 ~la~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-l~~  508 (721)
                      +|.|+....|+.+++++.....+.  ...+..+.|.+..++|+++..        ..-.|+..+.++.......+. +..
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~--------~~~~I~~~~l~~~~~~~~~~~~~~~   74 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL--------SQRMICSTQLDRAHGVSSYDTVISR   74 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEET--------TTTEEEEEEC--------CEEEECS
T ss_pred             EEEEECCCeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEEC--------CCCEEEEEEecCCCCCcceEEEEeC
Confidence            577777788999999988877665  345667889999999999752        223566665544211112223 333


Q ss_pred             CCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeE
Q 004971          509 NGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEM  588 (721)
Q Consensus       509 ~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i  588 (721)
                      .......+++.+-++.|++....  ...|+++++++...  ...+.........++..|...+|+++...     ....|
T Consensus        75 ~~~~p~glAvD~~~~~lY~~d~~--~~~I~v~~~~g~~~--~~~~~~~~~~P~~l~vd~~~g~ly~~~~~-----~~~~I  145 (266)
T d1ijqa1          75 DIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVKR--KTLFRENGSKPRAIVVDPVHGFMYWTDWG-----TPAKI  145 (266)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSSSE--EEEEECTTCCEEEEEEETTTTEEEEEECS-----SSCEE
T ss_pred             CCCCcceEEEeeccceEEEEecC--CCEEEeEecCCceE--EEEEcCCCCCcceEEEEcccCeEEEeccC-----CCcce
Confidence            33456678998889999998643  55899999987653  22233333445778999988889888754     22479


Q ss_pred             EEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEeccCCCCC
Q 004971          589 YLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQNSFED  668 (721)
Q Consensus       589 ~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~~~~~~  668 (721)
                      ++.++++...+.+... .-.....+++.+.++.|+++.....                .|+.++++|+..+.+.......
T Consensus       146 ~r~~~dGs~~~~l~~~-~~~~p~gl~iD~~~~~lYw~d~~~~----------------~I~~~~~dG~~~~~~~~~~~~~  208 (266)
T d1ijqa1         146 KKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLH----------------SISSIDVNGGNRKTILEDEKRL  208 (266)
T ss_dssp             EEEETTSCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTT----------------EEEEEETTSCSCEEEEECTTTT
T ss_pred             eEeccCCCceeccccc-ccceeeEEEeeccccEEEEecCCcC----------------EEEEEECCCCCEEEEEeCCCcc
Confidence            9999998877766543 2344577899999999999866543                5999999998776665433322


Q ss_pred             CCc---eecCCcCCccccc--ccc---ccccccccccceeeccCCCCcccccCCCc
Q 004971          669 GTP---AWGPRFIRPVDVE--EVK---NEQCAFEDCHWLNETPNQRDWGAALEPEK  716 (721)
Q Consensus       669 ~~~---~~sp~~l~~~~~~--~~~---~~~~~~~~~~W~~~~~~~~~~~~~~~~~~  716 (721)
                      ..|   ++.-+.|.+.+..  .+.   ...|  .....+..-...+.+++..-|.+
T Consensus       209 ~~p~~lav~~~~ly~td~~~~~I~~~~~~~g--~~~~~~~~~~~~p~~i~v~~~~~  262 (266)
T d1ijqa1         209 AHPFSLAVFEDKVFWTDIINEAIFSANRLTG--SDVNLLAENLLSPEDMVLFHNLT  262 (266)
T ss_dssp             SSEEEEEEETTEEEEEETTTTEEEEEETTTC--CCCEEEECSCSCCCCEEEESGGG
T ss_pred             cccEEEEEECCEEEEEECCCCeEEEEECCCC--cceEEEEcCCCCceEEEEECCcc
Confidence            233   3344555554432  111   2222  23455665555666665554443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.68  E-value=5.1e-06  Score=81.64  Aligned_cols=226  Identities=8%  Similarity=-0.002  Sum_probs=127.6

Q ss_pred             cccCceeecCCCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcc
Q 004971          321 HAFTPATSPGNNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNN  400 (721)
Q Consensus       321 ~~~~~~~sp~dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~  400 (721)
                      .+..++++| ||+ |++....    ..+|+.++... +...+...   ......++|+|||+.+ ++.....        
T Consensus        29 ~~e~iAv~p-dG~-l~vt~~~----~~~I~~i~p~g-~~~~~~~~---~~~~~gla~~~dG~l~-v~~~~~~--------   89 (302)
T d2p4oa1          29 FLENLASAP-DGT-IFVTNHE----VGEIVSITPDG-NQQIHATV---EGKVSGLAFTSNGDLV-ATGWNAD--------   89 (302)
T ss_dssp             CEEEEEECT-TSC-EEEEETT----TTEEEEECTTC-CEEEEEEC---SSEEEEEEECTTSCEE-EEEECTT--------
T ss_pred             CcCCEEECC-CCC-EEEEeCC----CCEEEEEeCCC-CEEEEEcC---CCCcceEEEcCCCCeE-EEecCCc--------
Confidence            456889999 997 5554332    34599999764 44343322   4566789999999844 4343333        


Q ss_pred             eeEEEeccCCCCcceec---c--cCCCCceeCcCCCEEEEE-eCCcEEEEECCCCceEEEe-ec----------CceeeE
Q 004971          401 QLLLENIKSPLPDISLF---R--FDGSFPSFSPKGDRIAFV-EFPGVYVVNSDGSNRRQVY-FK----------NAFSTV  463 (721)
Q Consensus       401 ~l~~~~~~~~~~~~~~~---~--~~~~~~~~SpDG~~la~~-~~~~l~v~d~~~g~~~~l~-~~----------~~~~~~  463 (721)
                      .++..............   .  .....+.+.++|+.++.. ....++.++..++...... ..          ......
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng  169 (302)
T d2p4oa1          90 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG  169 (302)
T ss_dssp             SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred             eEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccc
Confidence            23333332221111111   1  112235788998543333 3678999999887654332 10          111223


Q ss_pred             EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECC
Q 004971          464 WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAE  543 (721)
Q Consensus       464 ~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~  543 (721)
                      .+.++..++++..        ....||+++.+............. ......+++++||+ |+++...  ..+|++++.+
T Consensus       170 i~~~~~~l~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~-~~~pdgia~d~dG~-l~va~~~--~~~V~~i~p~  237 (302)
T d2p4oa1         170 LKRFGNFLYVSNT--------EKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN-LYGATHI--YNSVVRIAPD  237 (302)
T ss_dssp             EEEETTEEEEEET--------TTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC-EEEECBT--TCCEEEECTT
T ss_pred             ccccCCceeeecC--------CCCeEEeccccccccccccccccC-CCCCcceEECCCCC-EEEEEcC--CCcEEEECCC
Confidence            4456778888752        344566666554311112222222 23456799999998 5544432  5679999987


Q ss_pred             CCcccceEECcCCCcCceeeEE---ccCCCEEEEEEcc
Q 004971          544 GGEGYGLHRLTEGPWSDTMCNW---SPDGEWIAFASDR  578 (721)
Q Consensus       544 ~g~~~~~~~l~~~~~~~~~~~~---SpDG~~l~~~~~~  578 (721)
                      ++. ..+..+.........++|   +||++.|+++...
T Consensus       238 G~~-~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         238 RST-TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CCE-EEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCE-EEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            543 112333333334578899   7899999887754

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=1.1e-05  Score=77.06  Aligned_cols=198  Identities=12%  Similarity=0.094  Sum_probs=136.5

Q ss_pred             ceeCcCCCEEEEEe--CCcEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971          424 PSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD  498 (721)
Q Consensus       424 ~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~  498 (721)
                      +++....++|++..  ...|+..+++++..+.+..   ..+..+++..-++.|+++..        ....|..++.++. 
T Consensus        41 ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~--------~~~~I~~~~~dg~-  111 (263)
T d1npea_          41 LAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS--------QLDRIEVAKMDGT-  111 (263)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET--------TTTEEEEEETTSC-
T ss_pred             EEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEecc--------CCCEEEEEecCCc-
Confidence            56677788888873  6779999999887766652   35667888888999998852        2335566666654 


Q ss_pred             CccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEE
Q 004971          499 GVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFAS  576 (721)
Q Consensus       499 ~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~  576 (721)
                         ..+.+.... .....+++.|...+|++.....+...|++.++++...   ..+. .+-.....+++++.++.|+++.
T Consensus       112 ---~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~---~~i~~~~~~~P~glaiD~~~~~lYw~d  185 (263)
T d1npea_         112 ---QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RILAQDNLGLPNGLTFDAFSSQLCWVD  185 (263)
T ss_dssp             ---SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred             ---eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc---eeeeeecccccceEEEeecCcEEEEEe
Confidence               333443332 4667789999999999887644455799999987653   3332 3333446889999999999987


Q ss_pred             ccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCC
Q 004971          577 DRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGS  656 (721)
Q Consensus       577 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~  656 (721)
                      ...      ..|...++++...+.+... . .....++  .++.+|+++.....                .|+++|..++
T Consensus       186 ~~~------~~I~~~~~~g~~~~~v~~~-~-~~P~~la--v~~~~lYwtd~~~~----------------~I~~~~~~~g  239 (263)
T d1npea_         186 AGT------HRAECLNPAQPGRRKVLEG-L-QYPFAVT--SYGKNLYYTDWKTN----------------SVIAMDLAIS  239 (263)
T ss_dssp             TTT------TEEEEEETTEEEEEEEEEC-C-CSEEEEE--EETTEEEEEETTTT----------------EEEEEETTTT
T ss_pred             CCC------CEEEEEECCCCCeEEEECC-C-CCcEEEE--EECCEEEEEECCCC----------------EEEEEECCCC
Confidence            543      3899999988766655542 1 2223344  45788998876553                4999999888


Q ss_pred             CeEEec
Q 004971          657 DLKRLT  662 (721)
Q Consensus       657 ~~~~lt  662 (721)
                      +..++.
T Consensus       240 ~~~~~~  245 (263)
T d1npea_         240 KEMDTF  245 (263)
T ss_dssp             EEEEEE
T ss_pred             ccceEE
Confidence            765544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.6e-05  Score=76.10  Aligned_cols=231  Identities=10%  Similarity=0.092  Sum_probs=146.3

Q ss_pred             EEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC--
Q 004971          334 FIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL--  411 (721)
Q Consensus       334 ~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--  411 (721)
                      +|+|...      ..|+.+++++.+...+..   .......+.|.+..++|+++....        ..++...+.+..  
T Consensus         3 fLl~s~~------~~I~~~~l~~~~~~~~~~---~~~~~~~id~d~~~~~lYw~D~~~--------~~I~~~~l~~~~~~   65 (266)
T d1ijqa1           3 YLFFTNR------HEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQ--------RMICSTQLDRAHGV   65 (266)
T ss_dssp             EEEEECB------SSEEEEETTSCCCEEEEC---SCSSEEEEEEETTTTEEEEEETTT--------TEEEEEEC------
T ss_pred             EEEEECC------CeEEEEECCCCcceeeeC---CCCceEEEEEEeCCCEEEEEECCC--------CEEEEEEecCCCCC
Confidence            5666432      238899998877655542   133455678888899998864322        235555543311  


Q ss_pred             C-cceecc---cCCCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCC
Q 004971          412 P-DISLFR---FDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFAS  482 (721)
Q Consensus       412 ~-~~~~~~---~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~  482 (721)
                      . ......   .....+++.+-++.|+++.  ...|.++++++...+.+.   ...+..++..|...+|+++..      
T Consensus        66 ~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~------  139 (266)
T d1ijqa1          66 SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW------  139 (266)
T ss_dssp             --CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC------
T ss_pred             cceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEecc------
Confidence            1 111111   1233467766788888884  668999999988765554   235677889998889998853      


Q ss_pred             CCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCce
Q 004971          483 ESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDT  561 (721)
Q Consensus       483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~  561 (721)
                       .....|++.+.++.    ..+.+.... .....+++.+.+++|++....  ...|..+++++.....+........  .
T Consensus       140 -~~~~~I~r~~~dGs----~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~--~~~I~~~~~dG~~~~~~~~~~~~~~--~  210 (266)
T d1ijqa1         140 -GTPAKIKKGGLNGV----DIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNRKTILEDEKRLA--H  210 (266)
T ss_dssp             -SSSCEEEEEETTSC----CEEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEEECTTTTS--S
T ss_pred             -CCCcceeEeccCCC----ceecccccccceeeEEEeeccccEEEEecCC--cCEEEEEECCCCCEEEEEeCCCccc--c
Confidence             23457889998875    555554433 456778999999999998653  4689999998766322222221111  2


Q ss_pred             eeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971          562 MCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI  602 (721)
Q Consensus       562 ~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  602 (721)
                      ....+.++.+|+++....      ..|++++..+++...+.
T Consensus       211 p~~lav~~~~ly~td~~~------~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         211 PFSLAVFEDKVFWTDIIN------EAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             EEEEEEETTEEEEEETTT------TEEEEEETTTCCCCEEE
T ss_pred             cEEEEEECCEEEEEECCC------CeEEEEECCCCcceEEE
Confidence            234555678899887543      38999998777544443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=8.5e-06  Score=77.93  Aligned_cols=234  Identities=12%  Similarity=0.091  Sum_probs=148.8

Q ss_pred             CCEEEEEEecCCCCeeeEEEEECCCCceEEee---cccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEecc
Q 004971          332 NKFIAVATRRPTSSYRHIELFDLVKNKFIELT---RFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIK  408 (721)
Q Consensus       332 G~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~---~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  408 (721)
                      |.+|+|....      .|..++++......+.   ....+...+..+++....++|+++....        ..|+..++.
T Consensus         1 ~~fLl~s~~~------~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~--------~~I~~~~l~   66 (263)
T d1npea_           1 GTHLLFAQTG------KIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISE--------PSIGRASLH   66 (263)
T ss_dssp             CEEEEEEEEE------EEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTT--------TEEEEEESS
T ss_pred             CCEEEEeCCC------eEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCC--------CeEEEEEcc
Confidence            5678886432      4878887654322110   0111122244567888888888754332        357777776


Q ss_pred             CCCCcceecc--cCCCCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCC
Q 004971          409 SPLPDISLFR--FDGSFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFA  481 (721)
Q Consensus       409 ~~~~~~~~~~--~~~~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~  481 (721)
                      +.........  .....+++..-++.|+++.  ...|.+.++++...+.+.   ...+..++..|...+|+++..     
T Consensus        67 g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~-----  141 (263)
T d1npea_          67 GGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW-----  141 (263)
T ss_dssp             SCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEEC-----
T ss_pred             cCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeec-----
Confidence            5533322211  1223456665577888884  678999999988766665   245678899999999998863     


Q ss_pred             CCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCc
Q 004971          482 SESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSD  560 (721)
Q Consensus       482 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~  560 (721)
                       ......|++.+.++.    ....+.... .....+++.+.+++|++....  ...|...++++..   .+.+..+....
T Consensus       142 -~~~~~~I~r~~~dG~----~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~~g~~---~~~v~~~~~~P  211 (263)
T d1npea_         142 -NRDNPKIETSHMDGT----NRRILAQDNLGLPNGLTFDAFSSQLCWVDAG--THRAECLNPAQPG---RRKVLEGLQYP  211 (263)
T ss_dssp             -CSSSCEEEEEETTSC----CCEEEECTTCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTEEE---EEEEEECCCSE
T ss_pred             -CCCCcEEEEecCCCC----CceeeeeecccccceEEEeecCcEEEEEeCC--CCEEEEEECCCCC---eEEEECCCCCc
Confidence             234557999998875    444444333 455678999999999998643  5689999998765   33333332222


Q ss_pred             eeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEee
Q 004971          561 TMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLI  602 (721)
Q Consensus       561 ~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  602 (721)
                      ..+++  ++.+|+++....      ..|+++|..+++...+.
T Consensus       212 ~~lav--~~~~lYwtd~~~------~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         212 FAVTS--YGKNLYYTDWKT------NSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             EEEEE--ETTEEEEEETTT------TEEEEEETTTTEEEEEE
T ss_pred             EEEEE--ECCEEEEEECCC------CEEEEEECCCCccceEE
Confidence            34544  578899988653      38999999888766554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.58  E-value=1.7e-06  Score=84.73  Aligned_cols=210  Identities=12%  Similarity=0.111  Sum_probs=135.1

Q ss_pred             CCceeCcCCCEEEEEe--CCcEEEEECCCCceEEEe-ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCC
Q 004971          422 SFPSFSPKGDRIAFVE--FPGVYVVNSDGSNRRQVY-FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVD  498 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~--~~~l~v~d~~~g~~~~l~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~  498 (721)
                      ..+.|.+....|+++.  .+.|+.+|+++++.+... +..+..+++.+||+.++...         .  .|+.++..++ 
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va~~---------~--gl~~~d~~tg-   88 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASD---------D--GLFLRDTATG-   88 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEET---------T--EEEEEETTTC-
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEEEe---------C--ccEEeecccc-
Confidence            4579998888899984  788999999999877665 56677888988986665431         1  4777777654 


Q ss_pred             CccceEEcccCC-----CCCcceEEccCCCEEEEEEeeC---CceeEEEEECCCCcccceEECcCCCcCceeeEEccCCC
Q 004971          499 GVSAVRRLTTNG-----KNNAFPSVSPDGKWIVFRSTRT---GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGE  570 (721)
Q Consensus       499 ~~~~~~~l~~~~-----~~~~~~~~SpDg~~l~~~s~~~---g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~  570 (721)
                         +.+.+....     .......+.|+|+..+......   +...+|.++  .++   +..+.......+.++|+||++
T Consensus        89 ---~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~--~g~---~~~~~~~~~~~Ng~~~s~d~~  160 (295)
T d2ghsa1          89 ---VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK---VTKLFADISIPNSICFSPDGT  160 (295)
T ss_dssp             ---CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE---EEEEEEEESSEEEEEECTTSC
T ss_pred             ---eeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeec--CCc---EEEEeeccCCcceeeecCCCc
Confidence               555554322     2345578999998444333221   233555554  455   444443333447899999999


Q ss_pred             EEEEEEccCCCCCCceeEEEEecCCC------ceEEeee-cCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCC
Q 004971          571 WIAFASDRDNPGSGSFEMYLIHPNGT------GLRKLIQ-SGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQ  643 (721)
Q Consensus       571 ~l~~~~~~~~~~~~~~~i~~~d~~~~------~~~~l~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~  643 (721)
                      .|+++....      ..||.++++..      +...... ....+....+++..+|.. +++....+             
T Consensus       161 ~l~~~dt~~------~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gnl-Wva~~~~g-------------  220 (295)
T d2ghsa1         161 TGYFVDTKV------NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI-WNARWGEG-------------  220 (295)
T ss_dssp             EEEEEETTT------CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE-EEEEETTT-------------
T ss_pred             eEEEeeccc------ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCE-EeeeeCCC-------------
Confidence            999988753      37888887532      1222221 112344567889999974 44444332             


Q ss_pred             CCccEEEEEcCCCCeEEeccCCCCCCCceec
Q 004971          644 PYGEIFKIKLDGSDLKRLTQNSFEDGTPAWG  674 (721)
Q Consensus       644 ~~~~l~~~d~~~~~~~~lt~~~~~~~~~~~s  674 (721)
                         .|+++|.+|.....+.-.....++++|.
T Consensus       221 ---~V~~~dp~G~~~~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         221 ---AVDRYDTDGNHIARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             ---EEEEECTTCCEEEEEECSCSBEEEEEEE
T ss_pred             ---ceEEecCCCcEeeEecCCCCceEEEEEe
Confidence               4999999887777766444446778885

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.44  E-value=2.9e-05  Score=74.15  Aligned_cols=219  Identities=8%  Similarity=0.018  Sum_probs=116.5

Q ss_pred             ccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCCCcceecc--cCCCCceeCcCCCEEEEEe-CCcEEEEECCC
Q 004971          372 HLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPLPDISLFR--FDGSFPSFSPKGDRIAFVE-FPGVYVVNSDG  448 (721)
Q Consensus       372 ~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~SpDG~~la~~~-~~~l~v~d~~~  448 (721)
                      ...+++++||.. +++.....       .++...+............  .....++++++|+ |+++. ...+..+...+
T Consensus        16 P~~vavd~dG~i-~v~~~~~~-------~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~   86 (260)
T d1rwia_          16 PSGVAVDSAGNV-YVTSEGMY-------GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGS   86 (260)
T ss_dssp             EEEEEECTTCCE-EEEECSSS-------CEEEEEC----CEEECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTC
T ss_pred             CCEEEEcCCCCE-EEEEcCCC-------CEEEEEcCCCceEEEeccCCccCceEEEEcCCCC-EEEeeeeeceeeeeeec
Confidence            456789999873 33333222       2333333222211111111  1234578899986 44443 33344343333


Q ss_pred             CceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCCcceEEccCCCE
Q 004971          449 SNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKW  524 (721)
Q Consensus       449 g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~  524 (721)
                      .....+.   ...+..+++.++|+.+ +..        .....++.++..+.    ......... .....++++|+|+ 
T Consensus        87 ~~~~~~~~~~~~~p~~iavd~~g~i~-v~d--------~~~~~~~~~~~~~~----~~~~~~~~~~~~p~~i~~~~~g~-  152 (260)
T d1rwia_          87 NNQTVLPFDGLNYPEGLAVDTQGAVY-VAD--------RGNNRVVKLAAGSK----TQTVLPFTGLNDPDGVAVDNSGN-  152 (260)
T ss_dssp             SCCEECCCCSCCSEEEEEECTTCCEE-EEE--------GGGTEEEEECTTCS----SCEECCCCSCCSCCEEEECTTCC-
T ss_pred             cceeeeeeeeeeecccccccccceeE-eec--------cccccccccccccc----eeeeeeecccCCcceeeecCCCC-
Confidence            3332222   2345678999999744 332        13335666665553    333332222 3556789999998 


Q ss_pred             EEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeee
Q 004971          525 IVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQ  603 (721)
Q Consensus       525 l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  603 (721)
                      +++....  ...|++++.++..   ...+. ........++++++|+ |+++....      ..|++++.++.....+..
T Consensus       153 ~~v~~~~--~~~i~~~d~~~~~---~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~------~~i~~~~~~~~~~~~~~~  220 (260)
T d1rwia_         153 VYVTDTD--NNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAGT-VYVTEHNT------NQVVKLLAGSTTSTVLPF  220 (260)
T ss_dssp             EEEEEGG--GTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTCC-EEEEETTT------TEEEEECTTCSCCEECCC
T ss_pred             Eeeeccc--cccccccccccce---eeeeeccccCCCccceeeeeee-eeeeecCC------CEEEEEeCCCCeEEEEcc
Confidence            4444332  5679999988655   33333 2223346789999997 55555432      379999887765444322


Q ss_pred             cCCCCCcCCeEECCCCCEEEEEEe
Q 004971          604 SGSAGRANHPYFSPDGKSIVFTSD  627 (721)
Q Consensus       604 ~~~~~~~~~~~~SpDG~~l~~~~~  627 (721)
                      . .-.....+++++||. |+++..
T Consensus       221 ~-~~~~P~~i~~d~~g~-l~vad~  242 (260)
T d1rwia_         221 T-GLNTPLAVAVDSDRT-VYVADR  242 (260)
T ss_dssp             C-SCCCEEEEEECTTCC-EEEEEG
T ss_pred             C-CCCCeEEEEEeCCCC-EEEEEC
Confidence            1 122345678888886 444433

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.02  E-value=0.00021  Score=67.93  Aligned_cols=211  Identities=9%  Similarity=0.020  Sum_probs=115.9

Q ss_pred             CCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEcc
Q 004971          421 GSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVD  495 (721)
Q Consensus       421 ~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~  495 (721)
                      +..+++++||...+..  ....+..++..+.....+.   ...+..++++++|+ |+++..        ....+ .+...
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~-i~v~d~--------~~~~i-~~~~~   85 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF--------NNRVV-TLAAG   85 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCC-EEEEET--------TTEEE-EECTT
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCC-EEEeee--------eecee-eeeee
Confidence            3456889999743333  2355666665544433333   23456789999986 444431        22222 23322


Q ss_pred             CCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEE
Q 004971          496 DVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIA  573 (721)
Q Consensus       496 ~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~  573 (721)
                      +.    ....+.... .....+++.++|+.+ +....  ...+++++..+..   ..... .+......++++|+|+ |+
T Consensus        86 ~~----~~~~~~~~~~~~p~~iavd~~g~i~-v~d~~--~~~~~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~-~~  154 (260)
T d1rwia_          86 SN----NQTVLPFDGLNYPEGLAVDTQGAVY-VADRG--NNRVVKLAAGSKT---QTVLPFTGLNDPDGVAVDNSGN-VY  154 (260)
T ss_dssp             CS----CCEECCCCSCCSEEEEEECTTCCEE-EEEGG--GTEEEEECTTCSS---CEECCCCSCCSCCEEEECTTCC-EE
T ss_pred             cc----ceeeeeeeeeeecccccccccceeE-eeccc--cccccccccccce---eeeeeecccCCcceeeecCCCC-Ee
Confidence            22    222222222 345678899999844 44321  4568888877654   33322 2223346789999998 44


Q ss_pred             EEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEc
Q 004971          574 FASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKL  653 (721)
Q Consensus       574 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~  653 (721)
                      ++....      ..|++++.++.....+... .......++++++|+ |+++....+                .|+.++.
T Consensus       155 v~~~~~------~~i~~~d~~~~~~~~~~~~-~~~~p~gi~~d~~g~-l~vsd~~~~----------------~i~~~~~  210 (260)
T d1rwia_         155 VTDTDN------NRVVKLEAESNNQVVLPFT-DITAPWGIAVDEAGT-VYVTEHNTN----------------QVVKLLA  210 (260)
T ss_dssp             EEEGGG------TEEEEECTTTCCEEECCCS-SCCSEEEEEECTTCC-EEEEETTTT----------------EEEEECT
T ss_pred             eecccc------ccccccccccceeeeeecc-ccCCCccceeeeeee-eeeeecCCC----------------EEEEEeC
Confidence            544332      3799999887655544322 234456789999997 444443332                4888988


Q ss_pred             CCCCeEEeccCCC-CCCCceecCC
Q 004971          654 DGSDLKRLTQNSF-EDGTPAWGPR  676 (721)
Q Consensus       654 ~~~~~~~lt~~~~-~~~~~~~sp~  676 (721)
                      ++.....+..... .....+++++
T Consensus       211 ~~~~~~~~~~~~~~~P~~i~~d~~  234 (260)
T d1rwia_         211 GSTTSTVLPFTGLNTPLAVAVDSD  234 (260)
T ss_dssp             TCSCCEECCCCSCCCEEEEEECTT
T ss_pred             CCCeEEEEccCCCCCeEEEEEeCC
Confidence            7776555543221 2234556654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.95  E-value=0.0023  Score=55.68  Aligned_cols=231  Identities=16%  Similarity=0.126  Sum_probs=138.1

Q ss_pred             CCCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCC
Q 004971          331 NNKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSP  410 (721)
Q Consensus       331 dG~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  410 (721)
                      +++.+++.....|.    +-++-+..++...++..  +-...  ..-.+.=.+|.|+++-....  .. ..++..++..+
T Consensus        24 ~~d~ll~~~~seG~----vni~~l~g~~~vkLtke--PI~~~--~~Pk~~ldfi~f~RDV~kGk--E~-Hai~~~Nlk~~   92 (313)
T d2hu7a1          24 DGDKLLVVGFSEGS----VNAYLYDGGETVKLNRE--PINSV--LDPHYGVGRVILVRDVSKGA--EQ-HALFKVNTSRP   92 (313)
T ss_dssp             TTTEEEEEEEETTE----EEEEEESSSSCEECCSS--CCSEE--CEECTTBSEEEEEEECSTTS--CC-EEEEEEETTST
T ss_pred             cCCcEEEEEeccce----EEEEEEeCCEEEEEecc--cccCc--CCCccCcceEEEEeehhcCc--ce-eeEEEEccCCC
Confidence            56656665544444    44444567776676532  11111  11112234777777654422  11 45778887743


Q ss_pred             CCcceecccC-CCCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEeecCceeeEEcCCCCeEEEEecCCCCCCCCCcE
Q 004971          411 LPDISLFRFD-GSFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVYFKNAFSTVWDPVREAVVYTSGGPEFASESSEV  487 (721)
Q Consensus       411 ~~~~~~~~~~-~~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  487 (721)
                      -+........ .+-+...-|++.++|+  +.....+|-+++|+.+.+..-..+.+.-.-.+++++=..-     ...+..
T Consensus        93 GEE~~i~spk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~-----~~g~~~  167 (313)
T d2hu7a1          93 GEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGF-----FGGGRV  167 (313)
T ss_dssp             TCEEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEE-----EETTEE
T ss_pred             CeeeEecCCceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEee-----ecCCcc
Confidence            2222221111 2334555688899998  3677888888999998888555555555556777764331     123455


Q ss_pred             EEEEEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCC--------cC
Q 004971          488 DIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGP--------WS  559 (721)
Q Consensus       488 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~--------~~  559 (721)
                      .++..++.++    ..+.++...+....+.++|+.|- +..-+.-+.....-+|+++++   ..++.-..        ..
T Consensus       168 sfF~adl~SG----~lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~---yerve~P~kd~~sy~p~~  239 (313)
T d2hu7a1         168 SLFTSNLSSG----GLRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGS---VEDLELPSKDFSSYRPTA  239 (313)
T ss_dssp             EEEEEETTTE----EEEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC---EEECCCSSCHHHHHCCSE
T ss_pred             eEEEEecccC----CEEEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCc---eeeeecCcccceeecceE
Confidence            6888888654    88889888888888899998885 333333345555567999887   55554322        12


Q ss_pred             ceeeEEccCCCEEEEEEccCCCCCCceeEEE
Q 004971          560 DTMCNWSPDGEWIAFASDRDNPGSGSFEMYL  590 (721)
Q Consensus       560 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~  590 (721)
                      +..+-+.||++.++.+..+     +...+|+
T Consensus       240 I~~~~Y~Pdd~L~iiakrd-----G~s~lF~  265 (313)
T d2hu7a1         240 ITWLGYLPDGRLAVVARRE-----GRSAVFI  265 (313)
T ss_dssp             EEEEEECTTSCEEEEEEET-----TEEEEEE
T ss_pred             EEeeeeCCCCcEEEEEecC-----Cchheee
Confidence            3345589999976777665     5667774

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.95  E-value=0.0006  Score=65.36  Aligned_cols=163  Identities=15%  Similarity=0.195  Sum_probs=93.1

Q ss_pred             CCcEEEEECCCCceEEEe---ecCceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEcccCC--CC
Q 004971          438 FPGVYVVNSDGSNRRQVY---FKNAFSTVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRLTTNG--KN  512 (721)
Q Consensus       438 ~~~l~v~d~~~g~~~~l~---~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~--~~  512 (721)
                      ...|..++..+.....+.   ......++..++|+.++...         ....++.++.++.    ....+....  ..
T Consensus        92 ~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~---------~~~~~~~~~~~g~----~~~~~g~~~~~~~  158 (279)
T d1q7fa_          92 THQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVEC---------KVMRVIIFDQNGN----VLHKFGCSKHLEF  158 (279)
T ss_dssp             GCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEET---------TTTEEEEECTTSC----EEEEEECTTTCSS
T ss_pred             ccccccccccccceeecCCCcccccceeccccCCcEEEEee---------ccceeeEeccCCc----eeecccccccccc
Confidence            456777777655444443   23345678888887555432         2334555555553    334332222  34


Q ss_pred             CcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC-C-CcCceeeEEccCCCEEEEEEccCCCCCCceeEEE
Q 004971          513 NAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE-G-PWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYL  590 (721)
Q Consensus       513 ~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~-~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~  590 (721)
                      ...+++.++|+ |+++...  ...|+++|.++..   +..+.. + ......++++|+|+ |+++...     ....|.+
T Consensus       159 ~~~i~~d~~g~-i~v~d~~--~~~V~~~d~~G~~---~~~~g~~g~~~~P~giavD~~G~-i~Vad~~-----~~~~v~~  226 (279)
T d1q7fa_         159 PNGVVVNDKQE-IFISDNR--AHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGE-ILIADNH-----NNFNLTI  226 (279)
T ss_dssp             EEEEEECSSSE-EEEEEGG--GTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCC-EEEEECS-----SSCEEEE
T ss_pred             cceeeecccee-EEeeecc--ccceeeeecCCce---eeeecccccccCCcccccccCCe-EEEEECC-----CCcEEEE
Confidence            45578888886 5555442  5689999987543   444432 1 12246789999998 5555432     2236888


Q ss_pred             EecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEE
Q 004971          591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTS  626 (721)
Q Consensus       591 ~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~  626 (721)
                      ++.++.-...+...........+++.|||. |++++
T Consensus       227 f~~~G~~~~~~~~~~~~~~p~~vav~~dG~-l~V~~  261 (279)
T d1q7fa_         227 FTQDGQLISALESKVKHAQCFDVALMDDGS-VVLAS  261 (279)
T ss_dssp             ECTTSCEEEEEEESSCCSCEEEEEEETTTE-EEEEE
T ss_pred             ECCCCCEEEEEeCCCCCCCEeEEEEeCCCc-EEEEe
Confidence            886543233333222233457788999996 45444

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.88  E-value=0.00081  Score=64.40  Aligned_cols=214  Identities=15%  Similarity=0.119  Sum_probs=120.5

Q ss_pred             CCceeCcCCCEEEEE--eCCcEEEEECCCCceEEEe-e----c---CceeeEEcCCCCeEEEEecCCCCCCCCCcEEEEE
Q 004971          422 SFPSFSPKGDRIAFV--EFPGVYVVNSDGSNRRQVY-F----K---NAFSTVWDPVREAVVYTSGGPEFASESSEVDIIS  491 (721)
Q Consensus       422 ~~~~~SpDG~~la~~--~~~~l~v~d~~~g~~~~l~-~----~---~~~~~~~spdg~~la~~~~~~~~~~~~~~~~i~~  491 (721)
                      ..+++++||+ |+++  ....|.++|.++.-.+.+. .    +   ....+++.++....++..       ......|..
T Consensus        26 ~gvavd~dg~-i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-------~~~~~~i~~   97 (279)
T d1q7fa_          26 SGVAVNAQND-IIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTE-------RSPTHQIQI   97 (279)
T ss_dssp             EEEEECTTCC-EEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEE-------CGGGCEEEE
T ss_pred             cEEEEcCCCC-EEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceec-------cCCcccccc
Confidence            3468899987 5555  3678999998765444443 1    1   123445555555555443       223445666


Q ss_pred             EEccCCCCccceEEcccCC-CCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECc--CCCcCceeeEEccC
Q 004971          492 INVDDVDGVSAVRRLTTNG-KNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLT--EGPWSDTMCNWSPD  568 (721)
Q Consensus       492 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~--~~~~~~~~~~~SpD  568 (721)
                      .+..+.    ....+.... ......++.++|+.++....   ...+++++.++..   +..+.  .+......++++++
T Consensus        98 ~~~~g~----~~~~~~~~~~~~p~~~avd~~G~i~v~~~~---~~~~~~~~~~g~~---~~~~g~~~~~~~~~~i~~d~~  167 (279)
T d1q7fa_          98 YNQYGQ----FVRKFGATILQHPRGVTVDNKGRIIVVECK---VMRVIIFDQNGNV---LHKFGCSKHLEFPNGVVVNDK  167 (279)
T ss_dssp             ECTTSC----EEEEECTTTCSCEEEEEECTTSCEEEEETT---TTEEEEECTTSCE---EEEEECTTTCSSEEEEEECSS
T ss_pred             cccccc----ceeecCCCcccccceeccccCCcEEEEeec---cceeeEeccCCce---eecccccccccccceeeeccc
Confidence            665553    333333222 34456788899985554432   5578888877543   34332  22233466888998


Q ss_pred             CCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccE
Q 004971          569 GEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI  648 (721)
Q Consensus       569 G~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  648 (721)
                      |+ |+++....      ..|++++.++.....+-..+.......++++++|+ |+++......               .|
T Consensus       168 g~-i~v~d~~~------~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~---------------~v  224 (279)
T d1q7fa_         168 QE-IFISDNRA------HCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNF---------------NL  224 (279)
T ss_dssp             SE-EEEEEGGG------TEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSC---------------EE
T ss_pred             ee-EEeeeccc------cceeeeecCCceeeeecccccccCCcccccccCCe-EEEEECCCCc---------------EE
Confidence            86 55555442      38999998775444442221222345678999998 5554433221               38


Q ss_pred             EEEEcCCCCeEEeccCCC--CCCCceecCC
Q 004971          649 FKIKLDGSDLKRLTQNSF--EDGTPAWGPR  676 (721)
Q Consensus       649 ~~~d~~~~~~~~lt~~~~--~~~~~~~sp~  676 (721)
                      .+++.+|.-++.+.....  .....++.|+
T Consensus       225 ~~f~~~G~~~~~~~~~~~~~~p~~vav~~d  254 (279)
T d1q7fa_         225 TIFTQDGQLISALESKVKHAQCFDVALMDD  254 (279)
T ss_dssp             EEECTTSCEEEEEEESSCCSCEEEEEEETT
T ss_pred             EEECCCCCEEEEEeCCCCCCCEeEEEEeCC
Confidence            888877654555543221  2234455665

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.50  E-value=0.00052  Score=67.69  Aligned_cols=139  Identities=11%  Similarity=0.062  Sum_probs=75.6

Q ss_pred             CCcceEEccCCCEEEEEEeeCCceeEEEEECCC--------Cccc-ceEECcCCCcCceeeEEccCCCEEEEEEccCCCC
Q 004971          512 NNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEG--------GEGY-GLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPG  582 (721)
Q Consensus       512 ~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~--------g~~~-~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~  582 (721)
                      ....+..||||+++++....  ...+-++|.+.        ...+ .+..-.+-....-+.+|+.+|  -+|++.-    
T Consensus       276 sPHGV~vSPDGKyi~VaGKL--s~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g--~aytslf----  347 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKL--SPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG--NAYTSLF----  347 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTT--SSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTS--EEEEEET----
T ss_pred             CCCceEECCCCCEEEEeCCc--CCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCc--eEEEEee----
Confidence            56678999999999988754  55788888742        1110 011111111223456787766  4666643    


Q ss_pred             CCceeEEEEecCCC----------ceEEeeec----CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccE
Q 004971          583 SGSFEMYLIHPNGT----------GLRKLIQS----GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEI  648 (721)
Q Consensus       583 ~~~~~i~~~d~~~~----------~~~~l~~~----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  648 (721)
                       -..+|..|++...          ....-...    +|......-...|||+||+....-+..++-+ .+|.  + +..-
T Consensus       348 -ids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk~skdrfl~-vgpl--~-pe~~  422 (459)
T d1fwxa2         348 -LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN-VGPL--K-PEND  422 (459)
T ss_dssp             -TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC-CCSS--C-CEEE
T ss_pred             -ccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEecccccccccC-CCCC--C-Cccc
Confidence             2248999998422          11211111    1111112234689999999887544322111 1111  1 1235


Q ss_pred             EEEEcCCCCeEEecc
Q 004971          649 FKIKLDGSDLKRLTQ  663 (721)
Q Consensus       649 ~~~d~~~~~~~~lt~  663 (721)
                      .++|+.|.+++.|.+
T Consensus       423 qlidisg~~m~l~~d  437 (459)
T d1fwxa2         423 QLIDISGDKMVLVHD  437 (459)
T ss_dssp             EEEECSSSSCEEEEE
T ss_pred             eEEEcCCCeeEEEec
Confidence            567999888888876

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.07  E-value=0.11  Score=47.97  Aligned_cols=235  Identities=12%  Similarity=0.120  Sum_probs=130.3

Q ss_pred             CCEEEEEEecCCCCeeeEEEEECCCCceEEeecccCCCCcccCcEEcCCCCEEEEEEeeCCCCCCCCcceeEEEeccCCC
Q 004971          332 NKFIAVATRRPTSSYRHIELFDLVKNKFIELTRFVSPKTHHLNPFISPDSSRVGYHKCRGGSTREDGNNQLLLENIKSPL  411 (721)
Q Consensus       332 G~~la~~~~~~g~~~~~l~l~dl~tg~~~~l~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  411 (721)
                      .++|....  ..++..++.+.|+..+... ....    ......--.|..+.|+.-.   +       ..+.+.+++...
T Consensus        32 DkyicVRe--~~~~~~~VvIidl~n~~~~-~Rrp----i~AdsAIMhP~~~IiALra---g-------~~LQiFnletK~   94 (327)
T d1utca2          32 DKFICIRE--KVGEQAQVVIIDMNDPSNP-IRRP----ISADSAIMNPASKVIALKA---G-------KTLQIFNIEMKS   94 (327)
T ss_dssp             SSEEEEEE--EETTEEEEEEEETTSTTSC-EEEE----CCCSEEEECSSSSEEEEEE---T-------TEEEEEETTTTE
T ss_pred             CCEEEEEe--ccCCCceEEEEECCCCCcc-eecc----cchhhhhcCCCCcEEEEec---C-------CeEEEEehhHhh
Confidence            45655532  2234667999999876521 1111    1122344567777776643   2       346666766542


Q ss_pred             C-cceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCc-eEEEe-------ecCceeeEEcCCCCeEEEEecCCCCCC
Q 004971          412 P-DISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSN-RRQVY-------FKNAFSTVWDPVREAVVYTSGGPEFAS  482 (721)
Q Consensus       412 ~-~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~-~~~l~-------~~~~~~~~~spdg~~la~~~~~~~~~~  482 (721)
                      + .-........+-.|-.+ +.|+++....+|.|++++.. +..++       ...+..+.-++|.++++...-...-..
T Consensus        95 klks~~~~e~VvfWkWis~-~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~  173 (327)
T d1utca2          95 KMKAHTMTDDVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR  173 (327)
T ss_dssp             EEEEEECSSCCCEEEESSS-SEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTE
T ss_pred             hhceEEcCCCcEEEEecCC-CEEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCc
Confidence            2 11122333444566543 48999999999999997643 56665       234568899999999998752110001


Q ss_pred             CCCcEEEEEEEccCCCCccceEEcccCCCCCcceEEccCC-----CEEEEEEeeCCceeEEEEECCCCcc------cceE
Q 004971          483 ESSEVDIISINVDDVDGVSAVRRLTTNGKNNAFPSVSPDG-----KWIVFRSTRTGYKNLYIMDAEGGEG------YGLH  551 (721)
Q Consensus       483 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg-----~~l~~~s~~~g~~~l~~~d~~~g~~------~~~~  551 (721)
                      -.+...||.++..      ..+.|..+...  ...+--+|     +.++|+.......+|.++++.....      +...
T Consensus       174 i~G~mQLYS~er~------~sQ~ieGhaa~--F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~v  245 (327)
T d1utca2         174 VVGAMQLYSVDRK------VSQPIEGHAAS--FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV  245 (327)
T ss_dssp             EEEEEEEEETTTT------EEEEECCSEEE--EEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEE
T ss_pred             eeEEEEEEEeccC------cCccccceeee--eEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeE
Confidence            1355666665442      33445444311  11221121     2455555444456899999865321      1122


Q ss_pred             ECcCCC----cCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceE
Q 004971          552 RLTEGP----WSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLR  599 (721)
Q Consensus       552 ~l~~~~----~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~  599 (721)
                      .+.-.+    ...-.+..|+.=..|+.....+       .|++||+.++.+.
T Consensus       246 di~fppea~~DFPvamqvs~kygiiyviTK~G-------~i~lyDleTgt~i  290 (327)
T d1utca2         246 DVFFPPEAQNDFPVAMQISEKHDVVFLITKYG-------YIHLYDLETGTCI  290 (327)
T ss_dssp             ECCCCTTCTTCCEEEEEEETTTTEEEEEETTS-------EEEEEETTTCCEE
T ss_pred             EEECCccccCCcEEEEEeeccCCEEEEEecCc-------EEEEEEcccccEE
Confidence            333221    1123456777666666666554       8999999998654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.93  E-value=0.11  Score=45.11  Aligned_cols=200  Identities=17%  Similarity=0.134  Sum_probs=119.9

Q ss_pred             CCEEEEE--eCCcEEEEECCCCceEEEeecCce-eeEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceEEc
Q 004971          430 GDRIAFV--EFPGVYVVNSDGSNRRQVYFKNAF-STVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVRRL  506 (721)
Q Consensus       430 G~~la~~--~~~~l~v~d~~~g~~~~l~~~~~~-~~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l  506 (721)
                      +..|++.  +.+.+.++-+.+++...++...+. ...-.+.=.++.|+.+   .+.....-.||..++...   ++..++
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtkePI~~~~~Pk~~ldfi~f~RD---V~kGkE~Hai~~~Nlk~~---GEE~~i   98 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRD---VSKGAEQHALFKVNTSRP---GEEQRL   98 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCSSCCSEECEECTTBSEEEEEEE---CSTTSCCEEEEEEETTST---TCEEEC
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEecccccCcCCCccCcceEEEEee---hhcCcceeeEEEEccCCC---CeeeEe
Confidence            3334444  578888888889998888743332 2333334446666653   223344567888888732   255666


Q ss_pred             ccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCce
Q 004971          507 TTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF  586 (721)
Q Consensus       507 ~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~  586 (721)
                      .... .+.-++..-|++.++|.........||++  ++|+.+++..+..-     .+.-.=.|++|+=..--.   .+..
T Consensus        99 ~spk-~vRI~S~~yddk~vvF~Gased~~~LYvi--egGklrkL~~vPpF-----sFVtDI~~d~I~G~g~~~---g~~~  167 (313)
T d2hu7a1          99 EAVK-PMRILSGVDTGEAVVFTGATEDRVALYAL--DGGGLRELARLPGF-----GFVSDIRGDLIAGLGFFG---GGRV  167 (313)
T ss_dssp             TTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEE--ETTEEEEEEEESSC-----EEEEEEETTEEEEEEEEE---TTEE
T ss_pred             cCCc-eEEEEEeeecCceEEEecccCCceEEEEE--eCCceeeeccCCCc-----ceEEeccCCeEEEEeeec---CCcc
Confidence            5543 34445666789999999876555556665  56774334444322     111122367776444322   2556


Q ss_pred             eEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       587 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      .+|+-|+.+|..+.++.  ..+.++.+..+++.+.  .+.......             .....+|+..++..++.-
T Consensus       168 sfF~adl~SG~lri~tp--keGS~~~ay~~~gnKV--~sdyEt~gE-------------sywit~D~~s~~yerve~  227 (313)
T d2hu7a1         168 SLFTSNLSSGGLRVFDS--GEGSFSSASISPGMKV--TAGLETARE-------------ARLVTVDPRDGSVEDLEL  227 (313)
T ss_dssp             EEEEEETTTEEEEEECC--SSEEEEEEEECTTSCE--EEEEEESSC-------------EEEEEECTTTCCEEECCC
T ss_pred             eEEEEecccCCEEEecC--CCCcccceeEccCcee--eeccCCCCc-------------eEEEEEecccCceeeeec
Confidence            79999998988887775  5678888999998886  222222110             113345888877776654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.53  E-value=0.011  Score=58.15  Aligned_cols=199  Identities=13%  Similarity=0.118  Sum_probs=109.6

Q ss_pred             cCCCEEEEEe--CCcEEEEECCCCceEEEe----ecCceeeEEcCCCCeEEEEecCC----------CCCC-CCCcEEEE
Q 004971          428 PKGDRIAFVE--FPGVYVVNSDGSNRRQVY----FKNAFSTVWDPVREAVVYTSGGP----------EFAS-ESSEVDII  490 (721)
Q Consensus       428 pDG~~la~~~--~~~l~v~d~~~g~~~~l~----~~~~~~~~~spdg~~la~~~~~~----------~~~~-~~~~~~i~  490 (721)
                      +||++|+...  +.+|.++|+++-+..+|.    ......+..+++++..++.+.++          .+.. ......+.
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            5898887774  788999999998876655    22344456666666665554221          1111 11123345


Q ss_pred             EEEccCCCCccceEEcccCCCCCcceEEccCCCEEEEEEeeCC------------c-----------------------e
Q 004971          491 SINVDDVDGVSAVRRLTTNGKNNAFPSVSPDGKWIVFRSTRTG------------Y-----------------------K  535 (721)
Q Consensus       491 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g------------~-----------------------~  535 (721)
                      .++.++.   ....++.-. +......++|||+++++.+...+            .                       .
T Consensus       177 ~ID~~tm---~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         177 AVDADKW---EVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEETTTT---EEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEecCCc---eEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            6676654   122233332 35667899999999999874321            1                       1


Q ss_pred             eEEEEECCCCc-ccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCC--------CceEEe--eec
Q 004971          536 NLYIMDAEGGE-GYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNG--------TGLRKL--IQS  604 (721)
Q Consensus       536 ~l~~~d~~~g~-~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~--------~~~~~l--~~~  604 (721)
                      .+-++|..... ...+..+..+.. ...+..||||++++++..-.      ..+-++|+..        ...+..  ...
T Consensus       253 gV~VVD~~~~~~~~v~~yIPVpKs-PHGV~vSPDGKyi~VaGKLs------~tVSViD~~Ki~~~~~~~~~~~~~~~~e~  325 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIPIANN-PHGCNMAPDKKHLCVAGKLS------PTVTVLDVTRFDAVFYENADPRSAVVAEP  325 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEEEESS-CCCEEECTTSSEEEEECTTS------SBEEEEEGGGHHHHHHSCC-GGGGEEECC
T ss_pred             CceeecccccCCcceeEEEecCCC-CCceEECCCCCEEEEeCCcC------CcEEEEEehhhhhhhcccCCccccEEeec
Confidence            22334433210 011222322222 35789999999998887543      3788888742        111111  111


Q ss_pred             CCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcC
Q 004971          605 GSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLD  654 (721)
Q Consensus       605 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  654 (721)
                      ...-..-+-+|+.+|.  +|++---.               +++..|+++
T Consensus       326 elglgPLht~fd~~g~--aytslfid---------------s~v~kw~~~  358 (459)
T d1fwxa2         326 ELGLGPLHTAFDGRGN--AYTSLFLD---------------SQVVKWNIE  358 (459)
T ss_dssp             BCCSCEEEEEECTTSE--EEEEETTT---------------TEEEEEEHH
T ss_pred             ccCcCccccccCCCce--EEEEeecc---------------ceEEEEecc
Confidence            1222334567877763  66664332               368899873

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.41  E-value=0.094  Score=50.76  Aligned_cols=172  Identities=10%  Similarity=0.081  Sum_probs=95.7

Q ss_pred             CCcEEEEECCCCce--EEEe-e-c-------Ccee--eEEcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccceE
Q 004971          438 FPGVYVVNSDGSNR--RQVY-F-K-------NAFS--TVWDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAVR  504 (721)
Q Consensus       438 ~~~l~v~d~~~g~~--~~l~-~-~-------~~~~--~~~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  504 (721)
                      .+.|+++|++..+.  ..+. . .       ....  +.-.+||+..+++.+..   .....+.|+.++.++.    ...
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~---~~~~~ieif~~~~~~~----~l~  139 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP---GSSSTVEVFKFQEEEK----SLL  139 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECS---TTCCEEEEEEEETTTT----EEE
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEecc---CCCceeEEEEEeCCCC----eEE
Confidence            36799999876543  3333 1 1       1122  23356787655554432   2356789999887653    222


Q ss_pred             E---cccCC-CCCcceEEccCCCEEEEEEeeC---------------CceeEEEEECCCCcccceEECcCCCcCceeeEE
Q 004971          505 R---LTTNG-KNNAFPSVSPDGKWIVFRSTRT---------------GYKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNW  565 (721)
Q Consensus       505 ~---l~~~~-~~~~~~~~SpDg~~l~~~s~~~---------------g~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~  565 (721)
                      -   +.... .....+++..||. ++++....               ....++.||  +++   .+.+..+-...+.+++
T Consensus       140 ~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~--~~~---~~~~~~~l~~pNGI~~  213 (340)
T d1v04a_         140 HLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS--PND---VRVVAEGFDFANGINI  213 (340)
T ss_dssp             EEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC--SSC---EEEEEEEESSEEEEEE
T ss_pred             EEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEc--CCc---eEEEcCCCCccceeEE
Confidence            2   22222 3455678888886 44443211               123455554  444   3333333344578999


Q ss_pred             ccCCCEEEEEEccCCCCCCceeEEEEecCCCc-eEEeeecCCCCCcCCeEECCCCCEEEEEEec
Q 004971          566 SPDGEWIAFASDRDNPGSGSFEMYLIHPNGTG-LRKLIQSGSAGRANHPYFSPDGKSIVFTSDY  628 (721)
Q Consensus       566 SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~  628 (721)
                      |||++.|+++....      ..|++|++++.+ ..........+....+.+.+++..++.+...
T Consensus       214 s~d~~~lyVa~t~~------~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~p  271 (340)
T d1v04a_         214 SPDGKYVYIAELLA------HKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHP  271 (340)
T ss_dssp             CTTSSEEEEEEGGG------TEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEES
T ss_pred             CCCCCEEEEEeCCC------CeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEECC
Confidence            99999999988764      378888876543 2222111134556678887644444444443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.46  E-value=1.8  Score=44.74  Aligned_cols=112  Identities=12%  Similarity=0.129  Sum_probs=58.3

Q ss_pred             eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeE
Q 004971          535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY  614 (721)
Q Consensus       535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~  614 (721)
                      ..|..+|+.+|+.  +-+.... .....-..+-+|..|+....++       .++.+|..+|+..=-........-.-+.
T Consensus       457 G~l~AiD~~tGk~--~W~~~~~-~p~~gg~lstagglVF~G~~dg-------~l~A~Da~TGe~LW~~~~~~~~~~~P~t  526 (573)
T d1kb0a2         457 GRLLAWDPVAQKA--AWSVEHV-SPWNGGTLTTAGNVVFQGTADG-------RLVAYHAATGEKLWEAPTGTGVVAAPST  526 (573)
T ss_dssp             EEEEEEETTTTEE--EEEEEES-SSCCCCEEEETTTEEEEECTTS-------EEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred             ccEEEeCCCCCce--EeeecCC-CCCCCceEEEcCCEEEEECCCC-------eEEEEECCCCcEeEEEECCCCccccCEE
Confidence            3688899999884  2222211 1112233455676555444443       8999999999865333322222223356


Q ss_pred             ECCCCC-EEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971          615 FSPDGK-SIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       615 ~SpDG~-~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  657 (721)
                      |..||| ||++.+.-.+.. ............+.|+++.|+|+.
T Consensus       527 y~~~GkQYv~v~~G~gg~~-~~~~~~~~~~~~~~~~~F~l~g~~  569 (573)
T d1kb0a2         527 YMVDGRQYVSVAVGWGGVY-GLAARATERQGPGTVYTFVVGGKA  569 (573)
T ss_dssp             EEETTEEEEEEEECCCHHH-HHHCCSCSCCCCCEEEEEEETCBC
T ss_pred             EEECCEEEEEEEeCCCccc-ccccccccCCCCCEEEEEEeCCcC
Confidence            788997 455555432110 000000011223468999888764

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=1.4  Score=40.56  Aligned_cols=112  Identities=9%  Similarity=-0.091  Sum_probs=61.0

Q ss_pred             ceeEEEEECCCCcccceEECcCCCcC-ceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCC
Q 004971          534 YKNLYIMDAEGGEGYGLHRLTEGPWS-DTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANH  612 (721)
Q Consensus       534 ~~~l~~~d~~~g~~~~~~~l~~~~~~-~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~  612 (721)
                      ...++.+|..+++   .......... .......-+++.+++......  .....++++|..+.+...+... ......+
T Consensus       163 ~~~~~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~--~~~~~~~~~~~~~~~~~~~~~~-p~~r~~~  236 (288)
T d1zgka1         163 LNSAECYYPERNE---WRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQ--DQLNSVERYDVETETWTFVAPM-KHRRSAL  236 (288)
T ss_dssp             CCCEEEEETTTTE---EEECCCCSSCCBSCEEEEETTEEEEECCBCSS--SBCCCEEEEETTTTEEEECCCC-SSCCBSC
T ss_pred             cceEEEeeccccc---cccccccccccccccccceeeeEEEecCcccc--ccccceeeeeecceeeecccCc-cCcccce
Confidence            3478899998776   3333322111 112222334544444433321  1234788999988877766543 2223333


Q ss_pred             eEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          613 PYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       613 ~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      -+..-+++.+++...+...            ....+++||+.+++.+++..
T Consensus       237 ~~~~~~~~l~v~GG~~~~~------------~~~~v~~yd~~~~~W~~~~~  275 (288)
T d1zgka1         237 GITVHQGRIYVLGGYDGHT------------FLDSVECYDPDTDTWSEVTR  275 (288)
T ss_dssp             EEEEETTEEEEECCBCSSC------------BCCEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCEEEEEecCCCCe------------ecceEEEEECCCCEEEECCC
Confidence            3334467666654432211            12469999999998888864

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.84  E-value=1.8  Score=41.29  Aligned_cols=182  Identities=12%  Similarity=0.120  Sum_probs=100.1

Q ss_pred             EEEEE--eCCcEEEEECCCCceEEEeecCceeeE------EcCCCCeEEEEecCCCCCCCCCcEEEEEEEccCCCCccce
Q 004971          432 RIAFV--EFPGVYVVNSDGSNRRQVYFKNAFSTV------WDPVREAVVYTSGGPEFASESSEVDIISINVDDVDGVSAV  503 (721)
Q Consensus       432 ~la~~--~~~~l~v~d~~~g~~~~l~~~~~~~~~------~spdg~~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  503 (721)
                      .|++.  ....|++||+++.+...+..+.+..+.      +.-....+++++++.   .....+.+|.++....    ..
T Consensus        41 SlI~gTdK~~Gl~vYdL~G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~---~~~~~l~~~~id~~~~----~l  113 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLEGKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRS---EGKNTIEIYAIDGKNG----TL  113 (353)
T ss_dssp             CEEEEEETTSCCEEEETTCCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECC---TTTCEEEEEEEETTTT----EE
T ss_pred             cEEEEEcCcCCEEEEcCCCcEEEecccCCcCccccccccccCCcceEEEEEeCCc---CcceeEEEEEecCccc----cc
Confidence            34444  256799999988777766544443322      333334466666421   1234677888875543    44


Q ss_pred             EEcccCC-------CCCcceEE--ccC-CCEEEEEEeeCCceeEEEEECC-CCcc--cceEECcCCCcCceeeEEccCCC
Q 004971          504 RRLTTNG-------KNNAFPSV--SPD-GKWIVFRSTRTGYKNLYIMDAE-GGEG--YGLHRLTEGPWSDTMCNWSPDGE  570 (721)
Q Consensus       504 ~~l~~~~-------~~~~~~~~--SpD-g~~l~~~s~~~g~~~l~~~d~~-~g~~--~~~~~l~~~~~~~~~~~~SpDG~  570 (721)
                      ..+....       ..++.+++  +|. |+..+|.....|....|.+... .+..  +.++.+.. ......+.+.++.+
T Consensus       114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~  192 (353)
T d1h6la_         114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYG  192 (353)
T ss_dssp             EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTT
T ss_pred             ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCC
Confidence            4444321       23556666  554 6677788877665555555433 3331  22333332 23457899999999


Q ss_pred             EEEEEEccCCCCCCceeEEEEecC--CCceEEeeecC----CCCCcCCeE--ECCCCC-EEEEEEec
Q 004971          571 WIAFASDRDNPGSGSFEMYLIHPN--GTGLRKLIQSG----SAGRANHPY--FSPDGK-SIVFTSDY  628 (721)
Q Consensus       571 ~l~~~~~~~~~~~~~~~i~~~d~~--~~~~~~l~~~~----~~~~~~~~~--~SpDG~-~l~~~~~~  628 (721)
                      .|+++..+.       .||+++.+  .+....+....    ....+..++  -..+|+ +|+.++..
T Consensus       193 ~LyisEE~~-------Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG  252 (353)
T d1h6la_         193 SLYIAEEDE-------AIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQG  252 (353)
T ss_dssp             EEEEEETTT-------EEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred             cEEEecCcc-------ceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCC
Confidence            998888764       68888764  33333332211    112333344  355666 56555553

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.46  E-value=3.2  Score=42.61  Aligned_cols=85  Identities=14%  Similarity=0.011  Sum_probs=45.8

Q ss_pred             eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeE
Q 004971          535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY  614 (721)
Q Consensus       535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~  614 (721)
                      ..|..+|+.+|+.  +-+....... ..-..+-.|..|++...++       .++.+|.++|+..=-...+......-+.
T Consensus       444 G~l~AiD~~TG~~--~W~~~~~~~~-~~g~l~TagglVf~G~~dg-------~l~A~Da~tGe~lW~~~l~~~~~a~P~t  513 (571)
T d2ad6a1         444 GQIRAFDLTTGKA--KWTKWEKFAA-WGGTLYTKGGLVWYATLDG-------YLKALDNKDGKELWNFKMPSGGIGSPMT  513 (571)
T ss_dssp             EEEEEECTTTCCE--EEEEEESSCC-CSBCEEETTTEEEEECTTS-------EEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred             ccEEEeccCCCce--eeEcCCCCCC-CcceeEecCCEEEEECCCC-------eEEEEECCCCcEEEEEECCCCceecceE
Confidence            3688889998884  2222211111 1112233455555554443       8999999999765333322222333467


Q ss_pred             ECCCCCE-EEEEEecC
Q 004971          615 FSPDGKS-IVFTSDYG  629 (721)
Q Consensus       615 ~SpDG~~-l~~~~~~~  629 (721)
                      |..||+. |++...-+
T Consensus       514 y~~dGkqYi~v~~g~G  529 (571)
T d2ad6a1         514 YSFKGKQYIGSMYGVG  529 (571)
T ss_dssp             EEETTEEEEEEEECCC
T ss_pred             EEECCEEEEEEEeccC
Confidence            7889964 55555433

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.35  E-value=0.63  Score=44.60  Aligned_cols=118  Identities=13%  Similarity=0.009  Sum_probs=66.6

Q ss_pred             ccCCCEEEEEEee-CCce--eEEEEECCCCcccceEECcCC-CcCceeeEEccCCCEEEEEEccCCC-----------CC
Q 004971          519 SPDGKWIVFRSTR-TGYK--NLYIMDAEGGEGYGLHRLTEG-PWSDTMCNWSPDGEWIAFASDRDNP-----------GS  583 (721)
Q Consensus       519 SpDg~~l~~~s~~-~g~~--~l~~~d~~~g~~~~~~~l~~~-~~~~~~~~~SpDG~~l~~~~~~~~~-----------~~  583 (721)
                      .+||+..+++-+. ....  .|+.++..+.+..-+..+... ....+++++..||+ ++++......           ..
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~  185 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGL  185 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcC
Confidence            4678755555443 2233  455555555442222223222 23457888888886 5555432110           01


Q ss_pred             CceeEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCC
Q 004971          584 GSFEMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       584 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  657 (721)
                      ....++.||  +++.+.+..  .-...+.+++|||+++|+++.....                .|++|++++..
T Consensus       186 ~~g~v~~~~--~~~~~~~~~--~l~~pNGI~~s~d~~~lyVa~t~~~----------------~i~~y~~~~~~  239 (340)
T d1v04a_         186 AWSFVTYYS--PNDVRVVAE--GFDFANGINISPDGKYVYIAELLAH----------------KIHVYEKHANW  239 (340)
T ss_dssp             CCEEEEEEC--SSCEEEEEE--EESSEEEEEECTTSSEEEEEEGGGT----------------EEEEEEECTTS
T ss_pred             CceeEEEEc--CCceEEEcC--CCCccceeEECCCCCEEEEEeCCCC----------------eEEEEEeCCCc
Confidence            223455555  455554443  2245678999999999998887654                48888887543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.31  E-value=2.9  Score=41.49  Aligned_cols=53  Identities=9%  Similarity=0.138  Sum_probs=36.6

Q ss_pred             CCceeCcCCCEEEEEe-CCcEEEEECCCCceEEEe-----------ecCceeeEEcCC---CCeEEEE
Q 004971          422 SFPSFSPKGDRIAFVE-FPGVYVVNSDGSNRRQVY-----------FKNAFSTVWDPV---REAVVYT  474 (721)
Q Consensus       422 ~~~~~SpDG~~la~~~-~~~l~v~d~~~g~~~~l~-----------~~~~~~~~~spd---g~~la~~  474 (721)
                      ..++|.|||+.++... .+.|++++.++++.+.+.           .+....+++.||   ..+|++.
T Consensus        30 ~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvs   97 (450)
T d1crua_          30 HALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (450)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             eEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEE
Confidence            3579999997655553 588999998888876655           123356888885   4555553

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.15  E-value=0.22  Score=48.72  Aligned_cols=131  Identities=10%  Similarity=-0.004  Sum_probs=83.1

Q ss_pred             eEEccCCCEEEEEEeeC--------CceeEEEEECCCCcccceEECc-CCCcCceeeEEccCCCEEEEEEccCCCCCCce
Q 004971          516 PSVSPDGKWIVFRSTRT--------GYKNLYIMDAEGGEGYGLHRLT-EGPWSDTMCNWSPDGEWIAFASDRDNPGSGSF  586 (721)
Q Consensus       516 ~~~SpDg~~l~~~s~~~--------g~~~l~~~d~~~g~~~~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~  586 (721)
                      .....|||.++|.....        ....+++||+.+++-.....+. .........++.+||+.+++.....      .
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~------~   98 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA------K   98 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST------T
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCC------c
Confidence            44556888888776432        1225789999988742222222 2222224567899998777665432      3


Q ss_pred             eEEEEecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          587 EMYLIHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       587 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      .+++||..+..-..+............+..+||+.+++.......           ....++++||+.+.+...+..
T Consensus        99 ~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~-----------~~~~~v~~yd~~~~~W~~~~~  164 (387)
T d1k3ia3          99 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGG-----------VFEKNGEVYSPSSKTWTSLPN  164 (387)
T ss_dssp             CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSS-----------SCCCCEEEEETTTTEEEEETT
T ss_pred             ceeEecCccCcccccccccccccccceeeecCCceeeeccccccc-----------cccceeeeecCCCCceeecCC
Confidence            789999998877766544333445667888999988876543321           112468999999888777754

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.52  E-value=2.7  Score=38.49  Aligned_cols=220  Identities=10%  Similarity=0.124  Sum_probs=122.4

Q ss_pred             ceeEEEeccCCCCcceecccCCCCceeCcCCCEEEEEeCCcEEEEECCCCceE-EEe-ecCceeeEEcCCCCeEEEEecC
Q 004971          400 NQLLLENIKSPLPDISLFRFDGSFPSFSPKGDRIAFVEFPGVYVVNSDGSNRR-QVY-FKNAFSTVWDPVREAVVYTSGG  477 (721)
Q Consensus       400 ~~l~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~la~~~~~~l~v~d~~~g~~~-~l~-~~~~~~~~~spdg~~la~~~~~  477 (721)
                      ..+.+.++..+.. +..-+......-.+|..+-||.-....|.++|+++.+.. ... ...+..-.|-. .+.|++++  
T Consensus        45 ~~VvIidl~n~~~-~~Rrpi~AdsAIMhP~~~IiALrag~~LQiFnletK~klks~~~~e~VvfWkWis-~~~L~lVT--  120 (327)
T d1utca2          45 AQVVIIDMNDPSN-PIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVALVT--  120 (327)
T ss_dssp             EEEEEEETTSTTS-CEEEECCCSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEESS-SSEEEEEC--
T ss_pred             ceEEEEECCCCCc-ceecccchhhhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEcCCCcEEEEecC-CCEEEEEc--
Confidence            6788888876543 233334455567789888888888889999999988743 333 45555556653 45677765  


Q ss_pred             CCCCCCCCcEEEEEEEccCCCCccceEEcccCC----CCCcceEEccCCCEEEEEEee--CC--ceeEEEEECCCCcccc
Q 004971          478 PEFASESSEVDIISINVDDVDGVSAVRRLTTNG----KNNAFPSVSPDGKWIVFRSTR--TG--YKNLYIMDAEGGEGYG  549 (721)
Q Consensus       478 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~SpDg~~l~~~s~~--~g--~~~l~~~d~~~g~~~~  549 (721)
                            ...+.-|.+  ++..  ...+....+.    ..+.....++|++|++...-.  ++  .+.+.+|..+.+.   
T Consensus       121 ------~taVYHW~~--~g~s--~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~---  187 (327)
T d1utca2         121 ------DNAVYHWSM--EGES--QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---  187 (327)
T ss_dssp             ------SSEEEEEES--SSSC--CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE---
T ss_pred             ------CCceEEEcc--cCCC--CchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc---
Confidence                  244444544  3321  1333333332    234456889999999887532  21  2356677776543   


Q ss_pred             eEECcCCCcCceeeEEccCC-----CEEEEEEccCCCCCCceeEEEEecCCCc------eEE---eeecC--CCCCcCCe
Q 004971          550 LHRLTEGPWSDTMCNWSPDG-----EWIAFASDRDNPGSGSFEMYLIHPNGTG------LRK---LIQSG--SAGRANHP  613 (721)
Q Consensus       550 ~~~l~~~~~~~~~~~~SpDG-----~~l~~~~~~~~~~~~~~~i~~~d~~~~~------~~~---l~~~~--~~~~~~~~  613 (721)
                      -..+..+..  ....+--+|     +.++|+...    ....+|.++++....      .++   +...+  .....-.+
T Consensus       188 sQ~ieGhaa--~F~~~~~~g~~~~~~lf~fa~r~----~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvam  261 (327)
T d1utca2         188 SQPIEGHAA--SFAQFKMEGNAEESTLFCFAVRG----QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM  261 (327)
T ss_dssp             EEEECCSEE--EEEEECCTTCSSCEEEEEEEEEE----TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEE
T ss_pred             Cccccceee--eeEEEEcCCCCCCceEEEEEECC----CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEE
Confidence            333433322  233332222     244555443    245789999986531      111   21111  11122334


Q ss_pred             EECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeE
Q 004971          614 YFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLK  659 (721)
Q Consensus       614 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  659 (721)
                      ..|+-=..|+..+.. +                -||+||+.++...
T Consensus       262 qvs~kygiiyviTK~-G----------------~i~lyDleTgt~i  290 (327)
T d1utca2         262 QISEKHDVVFLITKY-G----------------YIHLYDLETGTCI  290 (327)
T ss_dssp             EEETTTTEEEEEETT-S----------------EEEEEETTTCCEE
T ss_pred             EeeccCCEEEEEecC-c----------------EEEEEEcccccEE
Confidence            556555555554443 3                4999999998754

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=91.68  E-value=5.8  Score=37.74  Aligned_cols=129  Identities=12%  Similarity=0.058  Sum_probs=69.4

Q ss_pred             ccCCCCCEEEEEecCCCCCCcccceeeeeEEEEEcCCCceeEEEe-cc-C-C---cceeccCCeEEEEeccCCCCcEEEE
Q 004971          222 AVSPSGKYTAVASYGNKGWDGEVEMLSTDIYIFLTRDGTQRVKIV-EN-G-G---WPCWVDESTLFFHRKSEEDDWISVY  295 (721)
Q Consensus       222 ~~SPDG~~la~~~~~~~~w~~~~~~~~~~i~~~d~~~g~~~~l~~-~~-~-~---~~~ws~dg~l~~~~~~~~~g~~~l~  295 (721)
                      ....||+.++|.........+ .......+++||+.+++-.++.. .. . .   ..++.+||++++....+ .....+|
T Consensus        26 ~~~~~gkv~v~GG~~~~~~~~-~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~-~~~~~~y  103 (387)
T d1k3ia3          26 IEPTSGRVLMWSSYRNDAFGG-SPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND-AKKTSLY  103 (387)
T ss_dssp             EETTTTEEEEEEECCCTTTCS-CCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS-TTCEEEE
T ss_pred             EEeeCCEEEEEEeecCcccCC-CCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCC-CcceeEe
Confidence            345689888886543221111 11123457899999987554431 11 1 1   23688999987743222 3455566


Q ss_pred             EEecCCCcceeccccceEEeCCC--CCcccCceeecCCCCEEEEEEecC-CCCeeeEEEEECCCCceEEee
Q 004971          296 KVILPQTGLVSTESVSIQRVTPP--GLHAFTPATSPGNNKFIAVATRRP-TSSYRHIELFDLVKNKFIELT  363 (721)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sp~dG~~la~~~~~~-g~~~~~l~l~dl~tg~~~~l~  363 (721)
                      +.   ...       ........  .......++.+ ||+.+++..... +.....+++||+.+++...+.
T Consensus       104 d~---~~~-------~w~~~~~~~~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~  163 (387)
T d1k3ia3         104 DS---SSD-------SWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLP  163 (387)
T ss_dssp             EG---GGT-------EEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEET
T ss_pred             cC---ccC-------cccccccccccccccceeeec-CCceeeeccccccccccceeeeecCCCCceeecC
Confidence            32   211       23333222  22234566778 998766643221 222345899999988765553

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.98  E-value=7.8  Score=34.91  Aligned_cols=202  Identities=7%  Similarity=-0.103  Sum_probs=92.5

Q ss_pred             CcEEEEECCCCceEEEee---cCceeeEEcCCCCeEEEEecCC-CCCCCCCcEEEEEEEccCCCCccceEEcccCC-CCC
Q 004971          439 PGVYVVNSDGSNRRQVYF---KNAFSTVWDPVREAVVYTSGGP-EFASESSEVDIISINVDDVDGVSAVRRLTTNG-KNN  513 (721)
Q Consensus       439 ~~l~v~d~~~g~~~~l~~---~~~~~~~~spdg~~la~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~  513 (721)
                      ..++++|+++++-..+.+   .........-++ .|++..... ..........+|.++....    ....+.... ...
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~----~w~~~~~~p~~r~   93 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGG-LLYAVGGRNNSPDGNTDSSALDCYNPMTN----QWSPCAPMSVPRN   93 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETT-EEEEECCEEEETTEEEECCCEEEEETTTT----EEEECCCCSSCCB
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEEECC-EEEEEeCcccCCCCccccchhhhcccccc----cccccccccceec
Confidence            468899999988777651   111122222244 444432100 0000111234566665543    444544433 222


Q ss_pred             cceEEccCCCEEEEEEeeCC--ceeEEEEECCCCcccceEECcCCCcCceee-EEccCCCEEEEEEccCCCCCCceeEEE
Q 004971          514 AFPSVSPDGKWIVFRSTRTG--YKNLYIMDAEGGEGYGLHRLTEGPWSDTMC-NWSPDGEWIAFASDRDNPGSGSFEMYL  590 (721)
Q Consensus       514 ~~~~~SpDg~~l~~~s~~~g--~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~-~~SpDG~~l~~~~~~~~~~~~~~~i~~  590 (721)
                      .+.+..-+++.+++......  ......++..+..   .............. ...-+++.+++......  .....++.
T Consensus        94 ~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~--~~~~~~~~  168 (288)
T d1zgka1          94 RIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDE---WHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGT--NRLNSAEC  168 (288)
T ss_dssp             TCEEEEETTEEEEECCEETTEECCCEEEEETTTTE---EEECCCCSSCCBSCEEEEETTEEEEECCBCSS--CBCCCEEE
T ss_pred             ceeccccceeeEEecceecccccceeeeeccccCc---cccccccccccccceeeeeeecceEecCcccc--cccceEEE
Confidence            33344456665554432221  2356677877665   22222221111111 12223343443332211  23457899


Q ss_pred             EecCCCceEEeeecCCCCCcCCeEECCCCCEEEEEEecCCCcCCCCCCCCCCCCCccEEEEEcCCCCeEEecc
Q 004971          591 IHPNGTGLRKLIQSGSAGRANHPYFSPDGKSIVFTSDYGGISAEPISTPHQYQPYGEIFKIKLDGSDLKRLTQ  663 (721)
Q Consensus       591 ~d~~~~~~~~l~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~lt~  663 (721)
                      +|...++....... ............+++.+++........            ...++++|..+.+...+..
T Consensus       169 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~GG~~~~~~------------~~~~~~~~~~~~~~~~~~~  228 (288)
T d1zgka1         169 YYPERNEWRMITAM-NTIRSGAGVCVLHNCIYAAGGYDGQDQ------------LNSVERYDVETETWTFVAP  228 (288)
T ss_dssp             EETTTTEEEECCCC-SSCCBSCEEEEETTEEEEECCBCSSSB------------CCCEEEEETTTTEEEECCC
T ss_pred             eecccccccccccc-ccccccccccceeeeEEEecCcccccc------------ccceeeeeecceeeecccC
Confidence            99988765554432 112222233333455444433322211            2358899998888777754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=87.39  E-value=17  Score=36.81  Aligned_cols=113  Identities=12%  Similarity=0.110  Sum_probs=57.3

Q ss_pred             eeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCeE
Q 004971          535 KNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHPY  614 (721)
Q Consensus       535 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~  614 (721)
                      ..|..+|+.+|+.  +-+..... ....-..+-.|..|+....++       .|+.+|.++|+..=-........-.-+.
T Consensus       438 G~l~A~D~~tGk~--~W~~~~~~-~~~gg~l~TagglVF~G~~dg-------~l~A~Da~tGe~LW~~~l~~~~~~~P~t  507 (560)
T d1kv9a2         438 GALLAWDPVKQKA--AWKVPYPT-HWNGGTLSTAGNLVFQGTAAG-------QMHAYSADKGEALWQFEAQSGIVAAPMT  507 (560)
T ss_dssp             EEEEEEETTTTEE--EEEEEESS-SCCCCEEEETTTEEEEECTTS-------EEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred             cceEEEeCCCCeE--eeeccCCC-CCCCceeEECCCEEEEECCCC-------cEEEEECCCCcEeEEEECCCCccccCEE
Confidence            4688899999984  22222211 112223344555444444443       8999999999865333322222223456


Q ss_pred             ECCCCC-EEEEEEecCCCcC---CCCCCCCCCCCCccEEEEEcCCCC
Q 004971          615 FSPDGK-SIVFTSDYGGISA---EPISTPHQYQPYGEIFKIKLDGSD  657 (721)
Q Consensus       615 ~SpDG~-~l~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~d~~~~~  657 (721)
                      +..||+ ||++.+...+...   ..............|+++.|.++.
T Consensus       508 y~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F~L~g~~  554 (560)
T d1kv9a2         508 FELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGKA  554 (560)
T ss_dssp             EEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCCC
T ss_pred             EEECCEEEEEEEeCCCcccccccccccccccCCCCCEEEEEEeCCCC
Confidence            778996 5555554322100   000000011223468888887654

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=85.46  E-value=11  Score=35.47  Aligned_cols=130  Identities=15%  Similarity=0.178  Sum_probs=65.9

Q ss_pred             EEEEEccCCCCccceEEcccCCCCCcce----EEccCCCEEEEEEeeC-CceeEE--EEECCCCcccceEECcCC-----
Q 004971          489 IISINVDDVDGVSAVRRLTTNGKNNAFP----SVSPDGKWIVFRSTRT-GYKNLY--IMDAEGGEGYGLHRLTEG-----  556 (721)
Q Consensus       489 i~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~SpDg~~l~~~s~~~-g~~~l~--~~d~~~g~~~~~~~l~~~-----  556 (721)
                      |+.+++++.    .+..+..+.-....+    .+.-++.-|++.++|+ +...|+  .++...+.   +..+...     
T Consensus        52 l~vYdL~G~----~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~---l~~~~~~~~p~~  124 (353)
T d1h6la_          52 LAVYSLEGK----MLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT---LQSITDPNRPIA  124 (353)
T ss_dssp             CEEEETTCC----EEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTE---EEECSCSSSCEE
T ss_pred             EEEEcCCCc----EEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccc---cccccccccccc
Confidence            555556664    555554433111112    2222333577888875 334554  44544443   4444321     


Q ss_pred             --CcCceeeEE--ccC-CCEEEEEEccCCCCCCceeEEEEecCC-CceE--EeeecCCCCCcCCeEECCCCCEEEEEEec
Q 004971          557 --PWSDTMCNW--SPD-GEWIAFASDRDNPGSGSFEMYLIHPNG-TGLR--KLIQSGSAGRANHPYFSPDGKSIVFTSDY  628 (721)
Q Consensus       557 --~~~~~~~~~--SpD-G~~l~~~~~~~~~~~~~~~i~~~d~~~-~~~~--~l~~~~~~~~~~~~~~SpDG~~l~~~~~~  628 (721)
                        ...+..+++  +|+ |+..+|.....    +....|.+.... +...  .+............++..+.+.|+++...
T Consensus       125 ~~~~~vYGlc~y~~~~~g~~~afv~~k~----G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~  200 (353)
T d1h6la_         125 SAIDEVYGFSLYHSQKTGKYYAMVTGKE----GEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEED  200 (353)
T ss_dssp             CSSSSCCCEEEEECTTTCCEEEEEECSS----SEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETT
T ss_pred             cccCcceEEEEEecCCCCeEEEEEEcCC----ceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCc
Confidence              122455666  665 66666776653    444445444333 3221  11111134456778899888888877655


Q ss_pred             C
Q 004971          629 G  629 (721)
Q Consensus       629 ~  629 (721)
                      .
T Consensus       201 ~  201 (353)
T d1h6la_         201 E  201 (353)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.14  E-value=24  Score=35.71  Aligned_cols=84  Identities=14%  Similarity=0.053  Sum_probs=49.7

Q ss_pred             ceeEEEEECCCCcccceEECcCCCcCceeeEEccCCCEEEEEEccCCCCCCceeEEEEecCCCceEEeeecCCCCCcCCe
Q 004971          534 YKNLYIMDAEGGEGYGLHRLTEGPWSDTMCNWSPDGEWIAFASDRDNPGSGSFEMYLIHPNGTGLRKLIQSGSAGRANHP  613 (721)
Q Consensus       534 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~  613 (721)
                      ...|+.+|+.+|+.  .-+...+ .....-..+..|..|+....++       .++.+|.++|+..=-...+....-.-+
T Consensus       465 ~G~l~AiD~~TG~i--~W~~~~~-~p~~~g~lstagglVF~Gt~dg-------~l~A~Da~TGe~LW~~~~~~~~~~~P~  534 (582)
T d1flga_         465 VGSLRAMDPVSGKV--VWEHKEH-LPLWAGVLATAGNLVFTGTGDG-------YFKAFDAKSGKELWKFQTGSGIVSPPI  534 (582)
T ss_dssp             SEEEEEECTTTCCE--EEEEEES-SCCCSCCEEETTTEEEEECTTS-------EEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred             CCeEEEEcCCCCcE--EeecCCC-CCCccceeEEcCCeEEEeCCCC-------eEEEEECCCCcEeEEEECCCCccccCE
Confidence            46799999999984  2222221 1112233456677555544443       899999999986533332222333446


Q ss_pred             EECCCCC-EEEEEEe
Q 004971          614 YFSPDGK-SIVFTSD  627 (721)
Q Consensus       614 ~~SpDG~-~l~~~~~  627 (721)
                      .|..||+ ||++.+.
T Consensus       535 ty~~~G~qYv~i~ag  549 (582)
T d1flga_         535 TWEQDGEQYLGVTVG  549 (582)
T ss_dssp             EEEETTEEEEEEEEC
T ss_pred             EEEECCEEEEEEEeC
Confidence            7889996 4665553

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=83.50  E-value=3.9  Score=40.46  Aligned_cols=122  Identities=16%  Similarity=0.156  Sum_probs=65.6

Q ss_pred             eEEcccCCCCCcceEEccCCCEEEEEEeeCCceeEEEEECCCCcccceEECcC------CCcCceeeEEccC---CCEEE
Q 004971          503 VRRLTTNGKNNAFPSVSPDGKWIVFRSTRTGYKNLYIMDAEGGEGYGLHRLTE------GPWSDTMCNWSPD---GEWIA  573 (721)
Q Consensus       503 ~~~l~~~~~~~~~~~~SpDg~~l~~~s~~~g~~~l~~~d~~~g~~~~~~~l~~------~~~~~~~~~~SpD---G~~l~  573 (721)
                      .+.+...-.....++|.|||+.++....   ...|++++.++++.+.+..+..      +......++++||   ..+|+
T Consensus        19 ~~~ia~~L~~P~~la~~pdg~llVter~---~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iY   95 (450)
T d1crua_          19 KKVILSNLNKPHALLWGPDNQIWLTERA---TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY   95 (450)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETT---TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred             EEEEECCCCCceEEEEeCCCeEEEEEec---CCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEE
Confidence            3444443346778999999986654421   4579999988887544444432      1233456899886   45666


Q ss_pred             EEEccCCC------CCCceeEEEEecCCCce-----EEeeec---CCCCCcCCeEECCCCCEEEEEEec
Q 004971          574 FASDRDNP------GSGSFEMYLIHPNGTGL-----RKLIQS---GSAGRANHPYFSPDGKSIVFTSDY  628 (721)
Q Consensus       574 ~~~~~~~~------~~~~~~i~~~d~~~~~~-----~~l~~~---~~~~~~~~~~~SpDG~~l~~~~~~  628 (721)
                      ++......      ......+.++..+....     +.+...   ........+.|.|||+ |+++..+
T Consensus        96 vsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~-LYvs~Gd  163 (450)
T d1crua_          96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGD  163 (450)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECC
T ss_pred             EEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCC-EEEEecC
Confidence            65331100      01122344554433321     111111   1112335789999997 5555544