Citrus Sinensis ID: 005021
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 719 | 2.2.26 [Sep-21-2011] | |||||||
| F4IW47 | 741 | Transketolase-2, chloropl | yes | no | 0.984 | 0.955 | 0.792 | 0.0 | |
| Q8RWV0 | 741 | Transketolase-1, chloropl | no | no | 0.981 | 0.952 | 0.786 | 0.0 | |
| Q43848 | 741 | Transketolase, chloroplas | N/A | no | 0.981 | 0.952 | 0.791 | 0.0 | |
| O20250 | 741 | Transketolase, chloroplas | N/A | no | 0.948 | 0.920 | 0.793 | 0.0 | |
| Q7SIC9 | 675 | Transketolase, chloroplas | N/A | no | 0.892 | 0.951 | 0.824 | 0.0 | |
| Q42677 | 676 | Transketolase 7 OS=Crater | N/A | no | 0.880 | 0.936 | 0.743 | 0.0 | |
| Q42675 | 679 | Transketolase 10 OS=Crate | N/A | no | 0.880 | 0.932 | 0.746 | 0.0 | |
| Q42676 | 519 | Transketolase, chloroplas | N/A | no | 0.680 | 0.942 | 0.830 | 0.0 | |
| Q8YRU9 | 670 | Transketolase OS=Nostoc s | yes | no | 0.877 | 0.941 | 0.625 | 0.0 | |
| Q9KAD7 | 666 | Transketolase OS=Bacillus | yes | no | 0.867 | 0.936 | 0.528 | 0.0 |
| >sp|F4IW47|TKTC2_ARATH Transketolase-2, chloroplastic OS=Arabidopsis thaliana GN=TKL-2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1219 bits (3153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/750 (79%), Positives = 646/750 (86%), Gaps = 42/750 (5%)
Query: 1 MASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRR 60
MAS+SS LSQALLTR SH+G SE+ +S+P+FS LKSTS T T +SRR
Sbjct: 1 MASTSSLALSQALLTRAISHNG----SEN------CVSIPAFSALKSTSPRTSGTISSRR 50
Query: 61 R-LSTSQASLP--IRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGC 117
R ST SL +RAAAVE + TS+D++LV+KSVNTIRFLA+DAVEKA SGHPGLPMGC
Sbjct: 51 RNASTISHSLRPLVRAAAVEAIVTSSDSSLVDKSVNTIRFLAIDAVEKAKSGHPGLPMGC 110
Query: 118 APMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQ 177
APM HILYDEVM+YNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV+E+DLK+FRQ
Sbjct: 111 APMSHILYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVREEDLKSFRQ 170
Query: 178 WGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVI 237
WGSKTPGHPENFETPG+E TTGPLGQG+ANAVGLALAEKHLAAR+NKPDNEIVDHYTY I
Sbjct: 171 WGSKTPGHPENFETPGVEATTGPLGQGIANAVGLALAEKHLAARFNKPDNEIVDHYTYSI 230
Query: 238 LGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHV 297
LGDGCQMEGI+NE SLAGH GLGKLIAFYDDNHISIDGDT+IAFTE+VDKRFE LGWHV
Sbjct: 231 LGDGCQMEGISNEVCSLAGHWGLGKLIAFYDDNHISIDGDTDIAFTESVDKRFEALGWHV 290
Query: 298 IWV-----------------------------TTTIGFGSPNKANSYSVHGSALGAKEVD 328
IWV TTTIG+GSPNKANSYSVHG+ALG KEV+
Sbjct: 291 IWVKNGNNGYDEIRAAIREAKAVTDKPTLIKVTTTIGYGSPNKANSYSVHGAALGEKEVE 350
Query: 329 ATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISS 388
ATR NLGWPYEPFHVPEDVK HWSRH EGA LEA+WNAKFA YEKKYPEEAAE KSI S
Sbjct: 351 ATRNNLGWPYEPFHVPEDVKSHWSRHTPEGAALEADWNAKFAAYEKKYPEEAAELKSIIS 410
Query: 389 GQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFG 448
G+LP GWEKALPTYTP+SP +ATRNLSQ CLNALAK +PG LGGSADLASSNMT+LK FG
Sbjct: 411 GELPVGWEKALPTYTPDSPGDATRNLSQQCLNALAKAVPGFLGGSADLASSNMTMLKAFG 470
Query: 449 DFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCE 508
+FQK TPEERN+RFGVREHGMGAICNGIALHSPG IPYCATFFVFTDYMRAA+RISAL E
Sbjct: 471 NFQKATPEERNLRFGVREHGMGAICNGIALHSPGFIPYCATFFVFTDYMRAAMRISALSE 530
Query: 509 AGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKR 568
AGVIYVMTHDSIGLGEDGPTHQPIEHL+SFRAMPNI+M RPADGNETAGAYK+AV RK
Sbjct: 531 AGVIYVMTHDSIGLGEDGPTHQPIEHLSSFRAMPNIMMFRPADGNETAGAYKIAVTKRKT 590
Query: 569 PSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELR 628
PS+LALSRQKLP L GTSI+ VEKG Y ISDNS+GNKPDVILIGTGSELEIAA+AAE+LR
Sbjct: 591 PSVLALSRQKLPQLPGTSIESVEKGGYTISDNSTGNKPDVILIGTGSELEIAAQAAEKLR 650
Query: 629 KGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGI 688
+ GK+VRVVSFV WELFDEQSDAYKESVLP+ VSARVSIEAGSTFGW KIVG KGK+IGI
Sbjct: 651 EQGKSVRVVSFVCWELFDEQSDAYKESVLPSDVSARVSIEAGSTFGWGKIVGGKGKSIGI 710
Query: 689 DRFGASAPAGKIYKEFGITAEAVITAAKEV 718
D FGASAPAGK+YKEFGIT EA++ AAK +
Sbjct: 711 DTFGASAPAGKLYKEFGITIEAMVEAAKSL 740
|
Catalyzes the reversible transfer of a two-carbon ketol group from fructose-6-phosphate or sedoheptulose-7-phosphate to glyceraldehyde-3-phosphate to yield xylulose-5-phosphate and erythrose-4-phosphate or ribose-5-phosphate, respectively (By similarity). Could act as a stress sensor involved in adaptation process. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 2EC: .EC: 1EC: .EC: 1 |
| >sp|Q8RWV0|TKTC1_ARATH Transketolase-1, chloroplastic OS=Arabidopsis thaliana GN=TKL-1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1203 bits (3113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 588/748 (78%), Positives = 636/748 (85%), Gaps = 42/748 (5%)
Query: 1 MASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSR- 59
MAS+SS LSQALL R SHHG Q SLP+FSGLKST S + R
Sbjct: 1 MASTSSLALSQALLARAISHHGSDQRG----------SLPAFSGLKSTGSRASASSRRRI 50
Query: 60 -RRLSTSQASLP-IRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGC 117
+ ++ +++ P +RAAAVET+E +TD+++V+KSVN+IRFLA+DAVEKA SGHPGLPMGC
Sbjct: 51 AQSMTKNRSLRPLVRAAAVETVEPTTDSSIVDKSVNSIRFLAIDAVEKAKSGHPGLPMGC 110
Query: 118 APMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQ 177
APM HILYDEVMRYNPKNPYWFNRDRFVLSAGHGCML YALLHLAGYDSVQE+DLK FRQ
Sbjct: 111 APMAHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLLYALLHLAGYDSVQEEDLKQFRQ 170
Query: 178 WGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVI 237
WGSKTPGHPENFETPGIEVTTGPLGQG+ANAVGLALAEKHLAAR+NKPD E+VDHYTY I
Sbjct: 171 WGSKTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDAEVVDHYTYAI 230
Query: 238 LGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHV 297
LGDGCQMEGI+NEA SLAGH GLGKLIAFYDDNHISIDGDTEIAFTENVD+RFE LGWHV
Sbjct: 231 LGDGCQMEGISNEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTENVDQRFEALGWHV 290
Query: 298 IWV-----------------------------TTTIGFGSPNKANSYSVHGSALGAKEVD 328
IWV TTTIG+GSPNKANSYSVHG+ALG KEV+
Sbjct: 291 IWVKNGNTGYDEIRAAIKEAKTVTDKPTLIKVTTTIGYGSPNKANSYSVHGAALGEKEVE 350
Query: 329 ATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISS 388
ATR NLGWPYEPF VP+DVK HWSRH EGATLE++W+AKFA YEKKYPEEA+E KSI +
Sbjct: 351 ATRNNLGWPYEPFQVPDDVKSHWSRHTPEGATLESDWSAKFAAYEKKYPEEASELKSIIT 410
Query: 389 GQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFG 448
G+LPAGWEKALPTYTPESP +ATRNLSQ CLNALAK +PG LGGSADLASSNMTLLK FG
Sbjct: 411 GELPAGWEKALPTYTPESPGDATRNLSQQCLNALAKVVPGFLGGSADLASSNMTLLKAFG 470
Query: 449 DFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCE 508
DFQK TPEERN+RFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMR A+RISAL E
Sbjct: 471 DFQKATPEERNLRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRGAMRISALSE 530
Query: 509 AGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKR 568
AGVIYVMTHDSIGLGEDGPTHQPIEH+ASFRAMPN LM RPADGNETAGAYK+AV RK
Sbjct: 531 AGVIYVMTHDSIGLGEDGPTHQPIEHIASFRAMPNTLMFRPADGNETAGAYKIAVTKRKT 590
Query: 569 PSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELR 628
PSILALSRQKLPHL GTSI+GVEKG Y ISD+SSGNKPDVILIGTGSELEIAA+AAE LR
Sbjct: 591 PSILALSRQKLPHLPGTSIEGVEKGGYTISDDSSGNKPDVILIGTGSELEIAAQAAEVLR 650
Query: 629 KGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGI 688
K GK VRVVSFV WELFDEQSD YKESVLP+ VSARVSIEA STFGW KIVG KGK+IGI
Sbjct: 651 KDGKTVRVVSFVCWELFDEQSDEYKESVLPSDVSARVSIEAASTFGWGKIVGGKGKSIGI 710
Query: 689 DRFGASAPAGKIYKEFGITAEAVITAAK 716
+ FGASAPA +YKEFGIT EAV+ AAK
Sbjct: 711 NSFGASAPAPLLYKEFGITVEAVVDAAK 738
|
Catalyzes the reversible transfer of a two-carbon ketol group from fructose-6-phosphate or sedoheptulose-7-phosphate to glyceraldehyde-3-phosphate to yield xylulose-5-phosphate and erythrose-4-phosphate or ribose-5-phosphate, respectively (By similarity). Could act as a stress sensor involved in adaptation process. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q43848|TKTC_SOLTU Transketolase, chloroplastic OS=Solanum tuberosum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1198 bits (3099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/752 (79%), Positives = 635/752 (84%), Gaps = 46/752 (6%)
Query: 1 MASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRR 60
MASSSS TLSQ + + HG + SS + SGLKST ++ S R
Sbjct: 1 MASSSSLTLSQVIFSPSLPRHGSSSSSSPSLSFSTF------SGLKSTPFTS-----SHR 49
Query: 61 RL----STSQASLPIRA-AAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPM 115
R+ + ++ +RA AAVETLE TDAA+VEKSVNTIRFLA+DAVEKANSGHPGLPM
Sbjct: 50 RILPSTTVTKQQFSVRASAAVETLE-KTDAAIVEKSVNTIRFLAIDAVEKANSGHPGLPM 108
Query: 116 GCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNF 175
GCAPMGHILYDEVM+YNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLK+F
Sbjct: 109 GCAPMGHILYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKSF 168
Query: 176 RQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTY 235
RQWGS+ PGHPENFETPG+EVTTGPLGQG+ANAVGLA+AEKHLAAR+NKPD EIVDHYTY
Sbjct: 169 RQWGSRIPGHPENFETPGVEVTTGPLGQGIANAVGLAVAEKHLAARFNKPDAEIVDHYTY 228
Query: 236 VILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGW 295
VILGDGCQMEGI+NE SLAGH GLGKLIAFYDDNHISIDGDTEIAFTE+V RFE LGW
Sbjct: 229 VILGDGCQMEGISNEVCSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVSARFESLGW 288
Query: 296 HVIWV-----------------------------TTTIGFGSPNKANSYSVHGSALGAKE 326
HVIWV TTTIGFGSPNKANSYSVHGS LGAKE
Sbjct: 289 HVIWVKNGNTGYDEIRAAIKEAKAVKDKPTMIKVTTTIGFGSPNKANSYSVHGSGLGAKE 348
Query: 327 VDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSI 386
V+ATR NLGWPYEPFHVPEDVK HWSRH EGA LE EWNAKFAEYEKKY EEAA+ KSI
Sbjct: 349 VEATRNNLGWPYEPFHVPEDVKSHWSRHTPEGAALETEWNAKFAEYEKKYAEEAADLKSI 408
Query: 387 SSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKM 446
+G+LPAGWEKALPTYTPESPA+ATRNLSQ LNALAK LPG LGGSADLASSNMTLLKM
Sbjct: 409 ITGELPAGWEKALPTYTPESPADATRNLSQQNLNALAKVLPGFLGGSADLASSNMTLLKM 468
Query: 447 FGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISAL 506
FGDFQK+TPEERN+RFGVREHGMGAICNGIALHS GLIPYCATFFVFTDYMR A+RISAL
Sbjct: 469 FGDFQKNTPEERNLRFGVREHGMGAICNGIALHSLGLIPYCATFFVFTDYMRGAMRISAL 528
Query: 507 CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANR 566
EAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILM RPADGNETAGAYKVAV R
Sbjct: 529 SEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMFRPADGNETAGAYKVAVLKR 588
Query: 567 KRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEE 626
K PSILALSRQKLP LAGTSI+G KG YI+SDNSSGNKPDVILIGTGSELEIA KAAEE
Sbjct: 589 KTPSILALSRQKLPQLAGTSIEGAAKGGYIVSDNSSGNKPDVILIGTGSELEIAVKAAEE 648
Query: 627 LRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAI 686
L+K GK VRVVSFV WEL+DEQS YKESVLP++V+ARVSIEAGSTFGW+K VG KGKAI
Sbjct: 649 LKKEGKTVRVVSFVCWELYDEQSAEYKESVLPSSVTARVSIEAGSTFGWQKFVGDKGKAI 708
Query: 687 GIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718
GID FGASAPA KIYKEFGITAEAV+ AAK+V
Sbjct: 709 GIDGFGASAPADKIYKEFGITAEAVVAAAKQV 740
|
Catalyzes the reversible transfer of a two-carbon ketol group from fructose-6-phosphate or sedoheptulose-7-phosphate to glyceraldehyde-3-phosphate to yield xylulose-5-phosphate and erythrose-4-phosphate or ribose-5-phosphate, respectively. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|O20250|TKTC_SPIOL Transketolase, chloroplastic OS=Spinacia oleracea PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1162 bits (3007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/716 (79%), Positives = 619/716 (86%), Gaps = 34/716 (4%)
Query: 38 SLPSFSGLKSTSSST-----LRTPTSRRRLSTSQASLPIRAAAVETLETSTDAALVEKSV 92
+ P+ S L T+SS L++ +S RRL AS +RAAAVE LE++ LVEKSV
Sbjct: 26 TTPASSLLVPTTSSKVNGVLLKSTSSSRRLRVGSASAVVRAAAVEALESTDIDQLVEKSV 85
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
NTIRFLA+DAVEKANSGHPGLPMGCAPMGHILYDE+MRYNPKNPYWFNRDRFVLSAGHGC
Sbjct: 86 NTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVLSAGHGC 145
Query: 153 MLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLA 212
MLQYALLHLAGYDSV E+DLK FRQWGS+ PGHPENFETPG+EVTTGPLGQG+ANAVGLA
Sbjct: 146 MLQYALLHLAGYDSVLEEDLKTFRQWGSRIPGHPENFETPGVEVTTGPLGQGIANAVGLA 205
Query: 213 LAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272
LAEKHLAAR+NKPD EIVDHYTYVILGDGCQMEGIA EA SLAGH GLGKLIAFYDDNHI
Sbjct: 206 LAEKHLAARFNKPDAEIVDHYTYVILGDGCQMEGIAQEACSLAGHWGLGKLIAFYDDNHI 265
Query: 273 SIDGDTEIAFTENVDKRFEGLGWHVIWV-----------------------------TTT 303
SIDGDT IAFTE+VD RFE LGWHVIWV TTT
Sbjct: 266 SIDGDTAIAFTESVDLRFEALGWHVIWVKNGNTGYDEIRAAIKEAKTVTDKPTLIKVTTT 325
Query: 304 IGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEA 363
IGFGSPNK+NSYSVHGSALG+KEV+ATR+NLGWPYEPFHVPE+VKKHWSRH EGA+LEA
Sbjct: 326 IGFGSPNKSNSYSVHGSALGSKEVEATRQNLGWPYEPFHVPEEVKKHWSRHTPEGASLEA 385
Query: 364 EWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALA 423
EWN KFAEYEKKYPE+A EFKSI++G+ PAGWEKALPTYTPE+P +ATRNLSQ CLNALA
Sbjct: 386 EWNTKFAEYEKKYPEDATEFKSITTGEFPAGWEKALPTYTPETPGDATRNLSQQCLNALA 445
Query: 424 KTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGL 483
K +PGLLGGSADLASSNMTLLKMFGDF++ ++ RFGVREHGMGAICNGI LHSPG
Sbjct: 446 KVIPGLLGGSADLASSNMTLLKMFGDFRRTHRKKETFRFGVREHGMGAICNGICLHSPGF 505
Query: 484 IPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN 543
+PYCATFFVFTDYMR A+RISAL EAGVIYVMTHDSIGLGEDGPTHQPIE L+ F AMPN
Sbjct: 506 VPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEALSKFPAMPN 565
Query: 544 ILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSG 603
ILMLRPADGNETAG+YKVAV NRK PSILALSR+KLP+L GTSI+GVEKG Y I+DNSSG
Sbjct: 566 ILMLRPADGNETAGSYKVAVENRKTPSILALSRKKLPNLPGTSIEGVEKGGYTITDNSSG 625
Query: 604 NKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSA 663
NKPDVILIGTGSELEIAAKA +ELRK GKAVRVVSFVSWELF++QSD YKESVLP+ V+A
Sbjct: 626 NKPDVILIGTGSELEIAAKAGDELRKEGKAVRVVSFVSWELFEKQSDEYKESVLPSDVTA 685
Query: 664 RVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 719
RVSIEAGSTFGW KIVGSKGKAIGID+FGASAPAGKIY+E+GIT EAV+ AAK VC
Sbjct: 686 RVSIEAGSTFGWHKIVGSKGKAIGIDKFGASAPAGKIYQEYGITVEAVVEAAKSVC 741
|
Catalyzes the reversible transfer of a two-carbon ketol group from fructose-6-phosphate or sedoheptulose-7-phosphate to glyceraldehyde-3-phosphate to yield xylulose-5-phosphate and erythrose-4-phosphate or ribose-5-phosphate, respectively. Spinacia oleracea (taxid: 3562) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q7SIC9|TKTC_MAIZE Transketolase, chloroplastic OS=Zea mays PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1162 bits (3005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/672 (82%), Positives = 595/672 (88%), Gaps = 30/672 (4%)
Query: 75 AVETLE-TSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNP 133
AVETL+ + L+EKSVNTIRFLA+DAVEKANSGHPGLPMGCAPMGH+LYDEVMRYNP
Sbjct: 2 AVETLQGKAATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNP 61
Query: 134 KNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPG 193
KNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV+E+DLK FRQWGS+TPGHPENFETPG
Sbjct: 62 KNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPG 121
Query: 194 IEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASS 253
+EVTTGPLGQG+ANAVGLALAEKHLAAR+NKPD+EIVDHYTYVILGDGCQMEGIANEA S
Sbjct: 122 VEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACS 181
Query: 254 LAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV------------- 300
LAGH GLGKLIAFYDDNHISIDGDTEIAFTE+V RFE LGWH IWV
Sbjct: 182 LAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAA 241
Query: 301 ----------------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVP 344
TTTIGFGSPNKANSYSVHGSALGAKEV+ATR+NLGWPY+ F VP
Sbjct: 242 IKEAKAVTDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQNLGWPYDTFFVP 301
Query: 345 EDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTP 404
EDVK HWSRH EGA LEA+WNAKFAEYEKKY ++AA KSI +G+LP GW ALP YTP
Sbjct: 302 EDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGELPTGWVDALPKYTP 361
Query: 405 ESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGV 464
ESP +ATRNLSQ CLNALA +PGL+GGSADLASSNMTLLKMFGDFQKDT EERNVRFGV
Sbjct: 362 ESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGV 421
Query: 465 REHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGE 524
REHGMGAICNGIALHSPG +PYCATFFVFTDYMR A+RISAL EAGVIYVMTHDSIGLGE
Sbjct: 422 REHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGE 481
Query: 525 DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAG 584
DGPTHQPIEHL SFRAMPNILMLRPADGNETAGAYKVAV NRKRPSILALSRQKLPHL G
Sbjct: 482 DGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPSILALSRQKLPHLPG 541
Query: 585 TSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWEL 644
TSI+GVEKG Y ISDNS+GNKPD+I++GTGSELEIAAKAA+ELRK GK VRVVSFVSWEL
Sbjct: 542 TSIEGVEKGGYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWEL 601
Query: 645 FDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEF 704
FDEQSD YKESVLPAAV+AR+SIEAGST GW+K VG++GKAIGID+FGASAPAG IYKE+
Sbjct: 602 FDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKEY 661
Query: 705 GITAEAVITAAK 716
GIT E++I AAK
Sbjct: 662 GITVESIIAAAK 673
|
Catalyzes the reversible transfer of a two-carbon ketol group from fructose-6-phosphate or sedoheptulose-7-phosphate to glyceraldehyde-3-phosphate to yield xylulose-5-phosphate and erythrose-4-phosphate or ribose-5-phosphate, respectively. Zea mays (taxid: 4577) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q42677|TKT7_CRAPL Transketolase 7 OS=Craterostigma plantagineum GN=TKT7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1060 bits (2742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/664 (74%), Positives = 563/664 (84%), Gaps = 31/664 (4%)
Query: 87 LVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVL 146
LV KSVNTIRFLA+DAVEKA SGHPG+PMGCAPMGH+LYDE MR+NPKNPYWFNRDRFVL
Sbjct: 13 LVSKSVNTIRFLAIDAVEKAKSGHPGMPMGCAPMGHVLYDEFMRFNPKNPYWFNRDRFVL 72
Query: 147 SAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMA 206
SAGHGCMLQYALLHL+GYDSV+E+DLK+ RQWGS+TP HPENFETPG+EVTTGPLGQG+A
Sbjct: 73 SAGHGCMLQYALLHLSGYDSVKEEDLKSLRQWGSRTPAHPENFETPGVEVTTGPLGQGIA 132
Query: 207 NAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAF 266
+AVGLA+AEKHLAARYNKP EIVDHYTYVILGDGCQMEG++NEA SLA H GLGKLIA
Sbjct: 133 SAVGLAVAEKHLAARYNKPGFEIVDHYTYVILGDGCQMEGVSNEACSLAAHWGLGKLIAL 192
Query: 267 YDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV-------------------------- 300
YDDNHI+IDGDT++AFTE+VDKRF+ LGWHVIWV
Sbjct: 193 YDDNHITIDGDTDVAFTEDVDKRFDALGWHVIWVKNGNDGCDEIRAAIEEAKSVKDRPTM 252
Query: 301 ---TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAE 357
TTTIG+G+P+KAN+Y VHG+ALG KE +ATRKNLGWPYEPFHVP+DVKKHWSRH+AE
Sbjct: 253 IKVTTTIGYGAPSKANTYGVHGNALGPKEAEATRKNLGWPYEPFHVPDDVKKHWSRHIAE 312
Query: 358 GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQT 417
GA LE+ WNAKFAE++KK+PEEAA+ KSI +G+LP WE PTYTPE+P TR LS
Sbjct: 313 GAALESAWNAKFAEFQKKFPEEAADLKSIITGELPTNWESIFPTYTPENPGLPTRTLSHQ 372
Query: 418 CLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIA 477
LN L LPGLLGGSADL SNM LK GDFQK +P ERNV+FG REH MG+ICNG+A
Sbjct: 373 ILNGLGDVLPGLLGGSADLTLSNMAFLKNSGDFQKKSPGERNVKFGAREHAMGSICNGLA 432
Query: 478 LHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLAS 537
LHSPGL+PYCAT+FVFTDYMRAA+RISAL +A V+Y+MTHDSIGLGEDGPTHQP+EHLAS
Sbjct: 433 LHSPGLLPYCATYFVFTDYMRAAMRISALSKARVLYIMTHDSIGLGEDGPTHQPVEHLAS 492
Query: 538 FRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYII 597
FRAMPNIL LRPADGNETAGAY+ AV N +RPSIL L+RQKLP L GTSI+GV KG Y+I
Sbjct: 493 FRAMPNILTLRPADGNETAGAYRAAVQNGERPSILVLARQKLPQLPGTSIEGVSKGGYVI 552
Query: 598 SDNSSG--NKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKES 655
SDNS G +KPDVILIGTGSELEIAA+A +ELRK GK VRVVS V WELF EQS+ Y+E+
Sbjct: 553 SDNSRGGNSKPDVILIGTGSELEIAARAGDELRKEGKKVRVVSLVCWELFAEQSEKYRET 612
Query: 656 VLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAA 715
VLP+ V+ARVS+EAGSTFGWE+ +G KGKA+GIDRFGASAPA +++KEFGIT EAV+ AA
Sbjct: 613 VLPSGVTARVSVEAGSTFGWERFIGPKGKAVGIDRFGASAPAERLFKEFGITVEAVVAAA 672
Query: 716 KEVC 719
KE+C
Sbjct: 673 KEIC 676
|
Could be involved in the conversion of sugars, which are a major phenomenon in the rehydration process. Craterostigma plantagineum (taxid: 4153) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q42675|TKTA_CRAPL Transketolase 10 OS=Craterostigma plantagineum GN=TKT10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1048 bits (2710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/663 (74%), Positives = 558/663 (84%), Gaps = 30/663 (4%)
Query: 87 LVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVL 146
LV KSVNTIRFLA+DAVE SGHPG+PMGCAPMGH+L+DE M++NPKNPYWFNRDRFVL
Sbjct: 17 LVVKSVNTIRFLAIDAVENVKSGHPGMPMGCAPMGHVLFDEFMKFNPKNPYWFNRDRFVL 76
Query: 147 SAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMA 206
SAGHG ML Y LLHLAGYDSV+ +DLK RQWGSKTP HPENFETPG+EVTTGPLGQG+
Sbjct: 77 SAGHGAMLLYGLLHLAGYDSVKVEDLKGLRQWGSKTPAHPENFETPGVEVTTGPLGQGVG 136
Query: 207 NAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAF 266
+AVGLALAEKHL ARYNKPD E+VDHYTY+ILGDGCQMEGI+NEASSLA H GLGKLIA
Sbjct: 137 SAVGLALAEKHLGARYNKPDFEMVDHYTYMILGDGCQMEGISNEASSLAAHWGLGKLIAL 196
Query: 267 YDDNHISIDGDTEIAFTENVDKRFEGLGWHV----------------------------- 297
YDDNHI+IDGDT++AFTE+V KRFE LGWHV
Sbjct: 197 YDDNHITIDGDTDLAFTEDVGKRFEALGWHVLTVANGNDGYDEIREAIKVAKSVTDKPTL 256
Query: 298 IWVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAE 357
I V TTIGFGSPNKAN+Y VHG+ALG KE +ATR+NLGWPYE FHVP+DVKKHWSRH++E
Sbjct: 257 IKVATTIGFGSPNKANTYGVHGNALGPKEAEATRQNLGWPYETFHVPDDVKKHWSRHISE 316
Query: 358 GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQT 417
GA LE+ WNAKFAEYEKKYP+EAAE KSI +G+LP GWEKALPTYTPESP TR LS
Sbjct: 317 GAELESAWNAKFAEYEKKYPKEAAELKSIITGELPLGWEKALPTYTPESPGNPTRTLSHQ 376
Query: 418 CLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIA 477
LNA+A LPGL+GGSADL +SNM LK GDFQK+TP RN++FG REHGMGAICNG+A
Sbjct: 377 NLNAVAAVLPGLIGGSADLTASNMAFLKSSGDFQKETPTGRNLKFGAREHGMGAICNGVA 436
Query: 478 LHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLAS 537
LHSPGL+P+ AT+FVFTDYMRAAIRI+AL +A V+Y+MTHDSIGLGEDGPTHQP+EHLAS
Sbjct: 437 LHSPGLVPFSATYFVFTDYMRAAIRIAALSKARVVYIMTHDSIGLGEDGPTHQPVEHLAS 496
Query: 538 FRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYII 597
FRAMPNIL+LRPADGNETAGAYKVAV N RPSIL+LSRQKLP L GTS++GV +G Y+I
Sbjct: 497 FRAMPNILVLRPADGNETAGAYKVAVENAGRPSILSLSRQKLPQLPGTSVEGVGRGGYVI 556
Query: 598 SDNS-SGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESV 656
SDNS G KP+VIL+GTGSELEIAA+A EELRK GK VRVVS VSWELF EQS YKE V
Sbjct: 557 SDNSKDGEKPEVILMGTGSELEIAARAGEELRKEGKKVRVVSLVSWELFGEQSKEYKEMV 616
Query: 657 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 716
LP+ V+ARVS+EAGSTFGWE+ VG KG+A+GIDRFGASA A ++YKEFGIT EAV+ AAK
Sbjct: 617 LPSEVTARVSVEAGSTFGWERFVGLKGRAVGIDRFGASASAERLYKEFGITVEAVVAAAK 676
Query: 717 EVC 719
E+C
Sbjct: 677 ELC 679
|
Could be involved in the conversion of sugars, which are a major phenomenon in the rehydration process. Craterostigma plantagineum (taxid: 4153) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q42676|TKTC_CRAPL Transketolase, chloroplastic (Fragment) OS=Craterostigma plantagineum GN=TKT3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/518 (83%), Positives = 457/518 (88%), Gaps = 29/518 (5%)
Query: 230 VDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKR 289
VDHYTY ILGDGCQMEG++NEA S+A H GLGKLIA YDDNHISIDGDT+IAFTE+VDKR
Sbjct: 1 VDHYTYCILGDGCQMEGVSNEACSIAAHWGLGKLIALYDDNHISIDGDTDIAFTEDVDKR 60
Query: 290 FEGLGWHVIWV-----------------------------TTTIGFGSPNKANSYSVHGS 320
FE LGWHVIWV TTTIGFGSPNK+NSYSVHGS
Sbjct: 61 FEALGWHVIWVKNGNNGYDKIRAAIKEAQAVKDKPTMIKITTTIGFGSPNKSNSYSVHGS 120
Query: 321 ALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEA 380
ALGAKEV+ATR+NLGWPYEPFHVP+DVKKHWSRH +GA+LE+EWNAKFAEYEKKYPEEA
Sbjct: 121 ALGAKEVEATRQNLGWPYEPFHVPDDVKKHWSRHTPQGASLESEWNAKFAEYEKKYPEEA 180
Query: 381 AEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSN 440
AE KSI +G+LP GWEKALPTYTPE+P +ATRNLSQ LNALAK LPGLLGGSADLASSN
Sbjct: 181 AELKSIITGELPLGWEKALPTYTPENPGDATRNLSQQNLNALAKVLPGLLGGSADLASSN 240
Query: 441 MTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAA 500
MTLLK GDFQK+TPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAA
Sbjct: 241 MTLLKSSGDFQKNTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAA 300
Query: 501 IRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYK 560
+RISALCEA VIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYK
Sbjct: 301 MRISALCEARVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYK 360
Query: 561 VAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIA 620
VAV N KRPS+LALSRQKLP L GTSI+GVEKG Y+ISDNSSGNKPDVILIGTGSELEIA
Sbjct: 361 VAVQNLKRPSVLALSRQKLPQLPGTSIEGVEKGGYVISDNSSGNKPDVILIGTGSELEIA 420
Query: 621 AKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVG 680
AKA E LRK GK VRVVSFVSWELFDEQS YKESVLP++V+ARVSIEAGSTFGW KIVG
Sbjct: 421 AKAGEVLRKEGKGVRVVSFVSWELFDEQSKEYKESVLPSSVTARVSIEAGSTFGWGKIVG 480
Query: 681 SKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718
SKGKAIGIDRFGASAPAGKIY+EFGIT EAV+ AAKE+
Sbjct: 481 SKGKAIGIDRFGASAPAGKIYEEFGITVEAVVAAAKEL 518
|
Craterostigma plantagineum (taxid: 4153) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q8YRU9|TKT_NOSS1 Transketolase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=tkt PE=1 SV=1 | Back alignment and function description |
|---|
Score = 863 bits (2231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/664 (62%), Positives = 499/664 (75%), Gaps = 33/664 (4%)
Query: 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFV 145
+L E S+N IRFLAVDA+EKA SGHPGLPMG APM +L++ MRYNPKNP WFNRDRFV
Sbjct: 7 SLEELSINAIRFLAVDAIEKAKSGHPGLPMGAAPMAFVLWNRFMRYNPKNPKWFNRDRFV 66
Query: 146 LSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGM 205
LSAGHG MLQYALL+L GYDSV +D+K FRQW SKTPGHPENF T G+EVTTGPLGQG+
Sbjct: 67 LSAGHGSMLQYALLYLTGYDSVSIEDIKQFRQWESKTPGHPENFMTAGVEVTTGPLGQGI 126
Query: 206 ANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIA 265
AN VGLA+AE HLAA++NKPD +IVDHYTYVILGDGC MEG++ EA+S AGHLGLGKLIA
Sbjct: 127 ANGVGLAIAEAHLAAKFNKPDAKIVDHYTYVILGDGCNMEGVSGEAASFAGHLGLGKLIA 186
Query: 266 FYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV------------------------- 300
YDDNHISIDG T++AFTE+V KRFE GWHVI V
Sbjct: 187 LYDDNHISIDGSTDVAFTEDVSKRFESYGWHVIHVKDGNTDLEAIHKAIEEAKAVTDKPT 246
Query: 301 ----TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVA 356
TT IG+GSPNK+N+ VHG+ALG EV TR+NLGW ++PF VPEDV + + V
Sbjct: 247 MIKVTTIIGYGSPNKSNTAGVHGAALGGDEVALTRQNLGWSHDPFVVPEDVLNYTRKAVE 306
Query: 357 EGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQ 416
GA E++WN +A+Y+ KYP+EAAEF+ SG+L GW+K LP+YTPE TR S+
Sbjct: 307 RGAGYESDWNKTYADYKAKYPQEAAEFERYLSGKLADGWDKVLPSYTPEDKGLPTRKHSE 366
Query: 417 TCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGI 476
TCLN LA LP L+GGSADL SN+T +K GDFQK + N+ FGVREHGMGAICNGI
Sbjct: 367 TCLNKLAAVLPELIGGSADLTHSNLTEIKGKGDFQKGQYQNPNIHFGVREHGMGAICNGI 426
Query: 477 ALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536
ALH GLIPY ATF +F+DYMRA IR+SAL +AG I+VMTHDSIG GEDGPTHQPIE LA
Sbjct: 427 ALHGSGLIPYGATFLIFSDYMRAPIRLSALSQAGSIWVMTHDSIGQGEDGPTHQPIETLA 486
Query: 537 SFRAMPNILMLRPADGNETAGAYKVAV--ANRKRPSILALSRQKLPHLAGTSIDGVEKGA 594
S RA+PN+ ++RPADGNET+GAYKVA+ A P++LA +RQ +P+LAGTSID V KG
Sbjct: 487 SLRAIPNLTVIRPADGNETSGAYKVAIERAKNNAPTLLAFTRQNVPNLAGTSIDDVAKGG 546
Query: 595 YIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKE 654
YI+ D PD+ILIGTGSEL + AAE+L+ GK VRVVS +W+LFD Q AYKE
Sbjct: 547 YIVVDTDG--TPDLILIGTGSELSLCVTAAEKLKAEGKKVRVVSLAAWDLFDAQDAAYKE 604
Query: 655 SVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITA 714
SVLP AV+ R+++EA S+FGW K +GS+G A+ IDRFGASAP G ++FG + + V+
Sbjct: 605 SVLPKAVTKRLAVEAASSFGWHKYIGSEGDAVTIDRFGASAPGGVCLEKFGFSVDNVLAK 664
Query: 715 AKEV 718
AK++
Sbjct: 665 AKQL 668
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q9KAD7|TKT_BACHD Transketolase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=tkt PE=3 SV=1 | Back alignment and function description |
|---|
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/660 (52%), Positives = 448/660 (67%), Gaps = 36/660 (5%)
Query: 91 SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGH 150
+VNTIR L++D+VEKANSGHPG+PMG APM L+ + M +NP NP W NRDRFVLSAGH
Sbjct: 9 AVNTIRTLSIDSVEKANSGHPGMPMGAAPMAFCLWTKFMNHNPANPDWVNRDRFVLSAGH 68
Query: 151 GCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVG 210
G ML Y+LLHL GYD + ++L+NFRQWGSKTPGHPE TPG+E TTGPLGQG+A AVG
Sbjct: 69 GSMLLYSLLHLTGYD-LSLEELQNFRQWGSKTPGHPEYGHTPGVEATTGPLGQGVAMAVG 127
Query: 211 LALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDN 270
+A+AE+HLAA YN+ IVDHYTY I GDG MEG++ EA+SLAGHL LG++I YD N
Sbjct: 128 MAMAERHLAATYNRDGYNIVDHYTYTICGDGDLMEGVSAEAASLAGHLKLGRMILLYDSN 187
Query: 271 HISIDGDTEIAFTENVDKRFEGLGWHV---------------------------IWVTTT 303
IS+DGD +F+E+V+ RF+ GWHV I V TT
Sbjct: 188 DISLDGDLHHSFSESVEDRFKAYGWHVVRVEDGNNLDEIAKAIEEAKADERPSLIEVKTT 247
Query: 304 IGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE-PFHVPEDVKKHWSRHVAEGATLE 362
IGFGSPNK HG+ LGA EV T++ W YE FH+PE+V ++ + +GA E
Sbjct: 248 IGFGSPNKGGKSVSHGAPLGADEVKLTKEAYEWTYENEFHIPEEVAAYYEQVKQQGAEKE 307
Query: 363 AEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNAL 422
WN FA+Y+K YPE A++F+ G LP GW+ P+Y + ATR+ S LNA
Sbjct: 308 ESWNELFAQYKKAYPELASQFELAVHGDLPEGWDAVAPSYEV-GKSVATRSSSGEALNAF 366
Query: 423 AKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPG 482
AKT+P L GGSADLASSN TL+K +F +D RNV FGVRE MGA NG+ALH G
Sbjct: 367 AKTVPQLFGGSADLASSNKTLIKGEANFSRDDYSGRNVWFGVREFAMGAAMNGMALHG-G 425
Query: 483 LIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMP 542
L + ATFFVF+DY+R AIR++AL + VIYV THDSI +GEDGPTH+P+E LAS RAMP
Sbjct: 426 LKVFGATFFVFSDYLRPAIRLAALMQLPVIYVFTHDSIAVGEDGPTHEPVEQLASLRAMP 485
Query: 543 NILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT---SIDGVEKGAYIISD 599
+ ++RPADGNE+ A+K+A+ ++ +P+ L LSRQ LP L G + DGV KGAY+++
Sbjct: 486 GLSVIRPADGNESVAAWKLALESKDQPTALVLSRQNLPTLEGAVDRAYDGVSKGAYVLA- 544
Query: 600 NSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPA 659
+ D++L+ +GSE+ +A A E L K G VVS SW+ F+ QS YKE VLP+
Sbjct: 545 -PANGSADLLLLASGSEVSLAVNAKEALEKEGIHAAVVSMPSWDRFEAQSAEYKEEVLPS 603
Query: 660 AVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 719
V+AR++IE GS+ GW K VG++G + IDRFGASAP +I +EFG T + V+ AK +
Sbjct: 604 DVTARLAIEMGSSLGWAKYVGNQGDVVAIDRFGASAPGERIMEEFGFTVQHVVARAKALL 663
|
Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 719 | ||||||
| 255541252 | 752 | transketolase, putative [Ricinus communi | 0.988 | 0.945 | 0.838 | 0.0 | |
| 449498919 | 745 | PREDICTED: transketolase, chloroplastic- | 0.994 | 0.959 | 0.835 | 0.0 | |
| 449454520 | 745 | PREDICTED: transketolase, chloroplastic- | 0.994 | 0.959 | 0.834 | 0.0 | |
| 118487947 | 744 | unknown [Populus trichocarpa] | 0.993 | 0.959 | 0.839 | 0.0 | |
| 224063766 | 744 | predicted protein [Populus trichocarpa] | 0.993 | 0.959 | 0.838 | 0.0 | |
| 118481093 | 744 | unknown [Populus trichocarpa] | 0.993 | 0.959 | 0.834 | 0.0 | |
| 356576867 | 740 | PREDICTED: transketolase, chloroplastic- | 0.987 | 0.959 | 0.827 | 0.0 | |
| 449432267 | 742 | PREDICTED: transketolase, chloroplastic- | 0.990 | 0.959 | 0.812 | 0.0 | |
| 356536526 | 742 | PREDICTED: transketolase, chloroplastic- | 0.990 | 0.959 | 0.824 | 0.0 | |
| 356506190 | 731 | PREDICTED: transketolase, chloroplastic- | 0.920 | 0.905 | 0.851 | 0.0 |
| >gi|255541252|ref|XP_002511690.1| transketolase, putative [Ricinus communis] gi|223548870|gb|EEF50359.1| transketolase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1295 bits (3352), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 637/760 (83%), Positives = 670/760 (88%), Gaps = 49/760 (6%)
Query: 1 MASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSS--------- 51
MAS+SS TLSQALL R SHH TQSS+ RL+LST SLP+FSGLKSTSSS
Sbjct: 1 MASTSSLTLSQALLARAISHHVSTQSSD--RLSLSTPSLPAFSGLKSTSSSIPRATSSRR 58
Query: 52 ---TLRTPTSRRRLSTSQASLPIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANS 108
PT+RR L T P RAAAVETL+ +TD +LVEKSVNTIRFLA+DAVEKANS
Sbjct: 59 SRRNSSIPTARR-LQT-----PTRAAAVETLDVTTDTSLVEKSVNTIRFLAIDAVEKANS 112
Query: 109 GHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ 168
GHPGLPMGCAPMGHILYDE+M+YNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV+
Sbjct: 113 GHPGLPMGCAPMGHILYDEIMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVK 172
Query: 169 EDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNE 228
E+DLK+FRQWGSKTPGHPENFETPG+EVTTGPLGQG+ANAVGLALAEKHLAAR+NKPDNE
Sbjct: 173 EEDLKSFRQWGSKTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDNE 232
Query: 229 IVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDK 288
IVDHYTY ILGDGCQMEGIANEA SLAGH GLGKLIAFYDDNHISIDGDTEIAFTE+VDK
Sbjct: 233 IVDHYTYAILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTESVDK 292
Query: 289 RFEGLGWHVIWV-----------------------------TTTIGFGSPNKANSYSVHG 319
RFE LGWHVIWV TTTIG+GSPNKANSYSVHG
Sbjct: 293 RFEALGWHVIWVKNGNTGYDEIRAAIKEAKAVTDKPTMIKVTTTIGYGSPNKANSYSVHG 352
Query: 320 SALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEE 379
SALGAKEVDATRKNLGWP+EPFHVPEDVK HWSRH+ GA EAEWNAKFAEYEKKY EE
Sbjct: 353 SALGAKEVDATRKNLGWPFEPFHVPEDVKNHWSRHIPGGAAFEAEWNAKFAEYEKKYKEE 412
Query: 380 AAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASS 439
AAE KSI G+LPAGWEKALPTYTPESPA+ATRNLSQ LNALAK LPGLLGGSADLASS
Sbjct: 413 AAELKSIIKGELPAGWEKALPTYTPESPADATRNLSQANLNALAKVLPGLLGGSADLASS 472
Query: 440 NMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRA 499
NMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRA
Sbjct: 473 NMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRA 532
Query: 500 AIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAY 559
A+RISAL EAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILM RPADGNETAGAY
Sbjct: 533 AMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMFRPADGNETAGAY 592
Query: 560 KVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEI 619
++AV NRKRPS+LALSRQKLP L GTSI+GVEKG Y ISDNSSGNKPDVILIGTGSELEI
Sbjct: 593 RIAVLNRKRPSVLALSRQKLPQLPGTSIEGVEKGGYTISDNSSGNKPDVILIGTGSELEI 652
Query: 620 AAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIV 679
AAKAAEELR+ GKAVRVVSFVSWELFDEQSDAYKESVLPAAV+ARVSIEAGSTFGW+KIV
Sbjct: 653 AAKAAEELRREGKAVRVVSFVSWELFDEQSDAYKESVLPAAVTARVSIEAGSTFGWQKIV 712
Query: 680 GSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 719
G KGKAIGIDRFGASAPAGKIYKE+GITAEAVI AAKE+C
Sbjct: 713 GGKGKAIGIDRFGASAPAGKIYKEYGITAEAVIAAAKELC 752
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449498919|ref|XP_004160671.1| PREDICTED: transketolase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1273 bits (3295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 624/747 (83%), Positives = 668/747 (89%), Gaps = 32/747 (4%)
Query: 1 MASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRR 60
MAS+SS LSQA+L R SHH S++ R++LST SLP+FSGLKST+S+ + + R
Sbjct: 1 MASTSSAALSQAVLPRTISHHASNPSAD--RVSLSTRSLPTFSGLKSTNSAAVVASSRRN 58
Query: 61 RLSTSQASLPIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPM 120
R S S+ + +RA+ ET++ +TD +L+EKSVNTIRFL++DAVEKANSGHPGLPMGCAPM
Sbjct: 59 RSSRSRCGV-VRASVAETVDKTTDTSLIEKSVNTIRFLSIDAVEKANSGHPGLPMGCAPM 117
Query: 121 GHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGS 180
GH+LYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV+E+DLKNFRQW S
Sbjct: 118 GHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKNFRQWES 177
Query: 181 KTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGD 240
+TPGHPENFETPGIEVTTGPLGQG+ANAVGLALAEKHLAAR+NKPDNEIVDHYTYVILGD
Sbjct: 178 RTPGHPENFETPGIEVTTGPLGQGVANAVGLALAEKHLAARFNKPDNEIVDHYTYVILGD 237
Query: 241 GCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV 300
GCQMEGIANEA SLAGH GLGKLIAFYDDNHISIDGDTEIAFTENVDKRFE LGWHVIWV
Sbjct: 238 GCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEALGWHVIWV 297
Query: 301 -----------------------------TTTIGFGSPNKANSYSVHGSALGAKEVDATR 331
TTTIG+GSPNKANSYSVHGSALGAKEVDATR
Sbjct: 298 KNGNNGYDEIRAAIREAKAVKDKPTLIKVTTTIGYGSPNKANSYSVHGSALGAKEVDATR 357
Query: 332 KNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQL 391
+NLGWPYEPFHVPEDVKKHWSRH +GA LEAEWNAKFAEYEKKY EEAAE K I SG+L
Sbjct: 358 QNLGWPYEPFHVPEDVKKHWSRHTPQGAALEAEWNAKFAEYEKKYAEEAAELKGIISGEL 417
Query: 392 PAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQ 451
PAGWEKALPTYTPESPA+ATRNLSQ LNALAK LPG LGGSADLASSNMTLLK FG+FQ
Sbjct: 418 PAGWEKALPTYTPESPADATRNLSQQNLNALAKVLPGFLGGSADLASSNMTLLKSFGNFQ 477
Query: 452 KDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGV 511
KDTPEERN+RFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISAL +AGV
Sbjct: 478 KDTPEERNLRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALSQAGV 537
Query: 512 IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSI 571
IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAV N+KRPSI
Sbjct: 538 IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVLNQKRPSI 597
Query: 572 LALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGG 631
LALSRQKLP+L GTSI+GVEKG YI+SDNSSGNKPDVILIGTGSELEIAAKAAEELRK G
Sbjct: 598 LALSRQKLPNLPGTSIEGVEKGGYILSDNSSGNKPDVILIGTGSELEIAAKAAEELRKEG 657
Query: 632 KAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRF 691
KAVR+VSFVSWELF+EQSDAYKESVLPAAVSARVSIEAG+TFGWEKIVGSKGKAIGIDRF
Sbjct: 658 KAVRLVSFVSWELFNEQSDAYKESVLPAAVSARVSIEAGTTFGWEKIVGSKGKAIGIDRF 717
Query: 692 GASAPAGKIYKEFGITAEAVITAAKEV 718
GASAPAGKIYKEFGIT EAVI AAK+V
Sbjct: 718 GASAPAGKIYKEFGITVEAVIAAAKQV 744
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454520|ref|XP_004145002.1| PREDICTED: transketolase, chloroplastic-like [Cucumis sativus] gi|449474170|ref|XP_004154093.1| PREDICTED: transketolase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1270 bits (3286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/747 (83%), Positives = 667/747 (89%), Gaps = 32/747 (4%)
Query: 1 MASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRR 60
MAS+SS LSQA+L R SHH S++ R++LST SLP+FSGLKST+S+ + + R
Sbjct: 1 MASTSSAALSQAVLPRTISHHASNPSAD--RVSLSTRSLPTFSGLKSTNSAAVVASSRRN 58
Query: 61 RLSTSQASLPIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPM 120
R S S+ + +RA+ ET++ +TD +L+EKSVNTIRFL++DAVEKANSGHPGLPMGCAPM
Sbjct: 59 RSSRSRCGV-VRASVAETVDKTTDTSLIEKSVNTIRFLSIDAVEKANSGHPGLPMGCAPM 117
Query: 121 GHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGS 180
GH+LYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV+E+DLKNFRQW S
Sbjct: 118 GHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKNFRQWES 177
Query: 181 KTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGD 240
+TPGHPENFETPGIEVTTGPLGQG+ANAVGLALAEKHLAAR+NKPDNEIVDHYTYVILGD
Sbjct: 178 RTPGHPENFETPGIEVTTGPLGQGVANAVGLALAEKHLAARFNKPDNEIVDHYTYVILGD 237
Query: 241 GCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV 300
GCQMEGIANEA SLAGH GLGKLIAFYDDNHISIDG TEIAFTENVDKRFE LGWHVIWV
Sbjct: 238 GCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGHTEIAFTENVDKRFEALGWHVIWV 297
Query: 301 -----------------------------TTTIGFGSPNKANSYSVHGSALGAKEVDATR 331
TTTIG+GSPNKANSYSVHGSALGAKEVDATR
Sbjct: 298 KNGNNGYDEIRAAIREAKAVKDKPTLIKVTTTIGYGSPNKANSYSVHGSALGAKEVDATR 357
Query: 332 KNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQL 391
+NLGWPYEPFHVPEDVKKHWSRH +GA LEAEWNAKFAEYEKKY EEAAE K I SG+L
Sbjct: 358 QNLGWPYEPFHVPEDVKKHWSRHTPQGAALEAEWNAKFAEYEKKYAEEAAELKGIISGEL 417
Query: 392 PAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQ 451
PAGWEKALPTYTPESPA+ATRNLSQ LNALAK LPG LGGSADLASSNMTLLK FG+FQ
Sbjct: 418 PAGWEKALPTYTPESPADATRNLSQQNLNALAKVLPGFLGGSADLASSNMTLLKSFGNFQ 477
Query: 452 KDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGV 511
KDTPEERN+RFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISAL +AGV
Sbjct: 478 KDTPEERNLRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALSQAGV 537
Query: 512 IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSI 571
IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAV N+KRPSI
Sbjct: 538 IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVLNQKRPSI 597
Query: 572 LALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGG 631
LALSRQKLP+L GTSI+GVEKG YI+SDNSSGNKPDVILIGTGSELEIAAKAAEELRK G
Sbjct: 598 LALSRQKLPNLPGTSIEGVEKGGYILSDNSSGNKPDVILIGTGSELEIAAKAAEELRKEG 657
Query: 632 KAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRF 691
KAVR+VSFVSWELF+EQSDAYKESVLPAAVSARVSIEAG+TFGWEKIVGSKGKAIGIDRF
Sbjct: 658 KAVRLVSFVSWELFNEQSDAYKESVLPAAVSARVSIEAGTTFGWEKIVGSKGKAIGIDRF 717
Query: 692 GASAPAGKIYKEFGITAEAVITAAKEV 718
GASAPAGKIYKEFGIT EAVI AAK+V
Sbjct: 718 GASAPAGKIYKEFGITVEAVIAAAKQV 744
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118487947|gb|ABK95795.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1268 bits (3280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/747 (83%), Positives = 660/747 (88%), Gaps = 33/747 (4%)
Query: 1 MASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRR 60
MAS+SS TLSQALL R SH+ + LS +SLP+FSGLKST+ + R T+
Sbjct: 1 MASTSSLTLSQALLARAVSHNAIDNLRDSR---LSLVSLPAFSGLKSTTCTATRATTTTS 57
Query: 61 RLSTSQASLPIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPM 120
R + +RAAAVETL+ +T+ +LVEKSVNTIRFLA+DAVEKANSGHPGLPMGCAPM
Sbjct: 58 RRRRVSSRQ-VRAAAVETLDATTETSLVEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPM 116
Query: 121 GHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGS 180
GHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV+E+DLK+FRQWGS
Sbjct: 117 GHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKSFRQWGS 176
Query: 181 KTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGD 240
+TPGHPENFETPG+EVTTGPLGQG+ANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGD
Sbjct: 177 RTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGD 236
Query: 241 GCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV 300
GCQMEGI+NEA SLA H GLGKLIAFYDDNHISIDGDTEIAFTE+VDKRFEGLGWHVIWV
Sbjct: 237 GCQMEGISNEACSLAAHWGLGKLIAFYDDNHISIDGDTEIAFTEDVDKRFEGLGWHVIWV 296
Query: 301 -----------------------------TTTIGFGSPNKANSYSVHGSALGAKEVDATR 331
TTTIG+GSPNKANSYSVHGSALGAKEVDATR
Sbjct: 297 KNGNTGYDEIRAAIKEAKSVKDKPTLIKVTTTIGYGSPNKANSYSVHGSALGAKEVDATR 356
Query: 332 KNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQL 391
+NLGWPYEPFHVPEDVK+HWSRH GA EAEWNAKFAEYEKKY EEAAE KSI++G+L
Sbjct: 357 QNLGWPYEPFHVPEDVKQHWSRHTPAGAAFEAEWNAKFAEYEKKYSEEAAELKSIANGEL 416
Query: 392 PAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQ 451
PAGWEKALPTYTPESPA+ATRNLSQ LNALAK LPGLLGGSADLASSNMTLLKMFGDFQ
Sbjct: 417 PAGWEKALPTYTPESPADATRNLSQQNLNALAKVLPGLLGGSADLASSNMTLLKMFGDFQ 476
Query: 452 KDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGV 511
KDTPEERNVRFGVREHGMGAICNGIALH PGLIPYCATFFVFTDYMRAA+RISAL EAGV
Sbjct: 477 KDTPEERNVRFGVREHGMGAICNGIALHCPGLIPYCATFFVFTDYMRAAMRISALSEAGV 536
Query: 512 IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSI 571
IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAV NRKRPSI
Sbjct: 537 IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVLNRKRPSI 596
Query: 572 LALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGG 631
LALSRQKLP L GTSI+GVEKG YIISDNSS NKPDVILIGTGSELEIAAKAAEELRK G
Sbjct: 597 LALSRQKLPQLPGTSIEGVEKGGYIISDNSSSNKPDVILIGTGSELEIAAKAAEELRKEG 656
Query: 632 KAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRF 691
KAVRVVSFVSWELFDEQSDAYKESVLPAAV ARVSIEAGSTFGWEKIVG KGKAIGIDRF
Sbjct: 657 KAVRVVSFVSWELFDEQSDAYKESVLPAAVEARVSIEAGSTFGWEKIVGDKGKAIGIDRF 716
Query: 692 GASAPAGKIYKEFGITAEAVITAAKEV 718
GASAPAGKIYKE+GIT EAVI AAKEV
Sbjct: 717 GASAPAGKIYKEYGITTEAVIAAAKEV 743
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224063766|ref|XP_002301278.1| predicted protein [Populus trichocarpa] gi|222843004|gb|EEE80551.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1266 bits (3276), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/747 (83%), Positives = 659/747 (88%), Gaps = 33/747 (4%)
Query: 1 MASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRR 60
MAS+SS TLSQALL R SH+ + LS +SLP+FSGLKST+ + R T+
Sbjct: 1 MASTSSLTLSQALLARAVSHNAIDNLRDSR---LSLVSLPAFSGLKSTTCTATRATTTTS 57
Query: 61 RLSTSQASLPIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPM 120
R + +RAAAVETL+ +T+ +LVEKSVNTIRFLA+DAVEKANSGHPGLPMGCAPM
Sbjct: 58 RRRRVSSRQ-VRAAAVETLDATTETSLVEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPM 116
Query: 121 GHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGS 180
GHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV+E+DLK+FRQWGS
Sbjct: 117 GHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKSFRQWGS 176
Query: 181 KTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGD 240
+TPGHPENFETPG+EVTTGPLGQG+ANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGD
Sbjct: 177 RTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGD 236
Query: 241 GCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV 300
GCQMEGI+NEA SLA H GLGKLIAFYDDNHISIDGDTEIAFTE+VDKRFEGLGWHVIWV
Sbjct: 237 GCQMEGISNEACSLAAHWGLGKLIAFYDDNHISIDGDTEIAFTEDVDKRFEGLGWHVIWV 296
Query: 301 -----------------------------TTTIGFGSPNKANSYSVHGSALGAKEVDATR 331
TTTIG+GSPNKANSYSVHGSALGAKEVDATR
Sbjct: 297 KNGNTGYDEIRAAIKEAKSVKDKPTLIKVTTTIGYGSPNKANSYSVHGSALGAKEVDATR 356
Query: 332 KNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQL 391
+NLGWPYEPFHVPEDVK+HWSRH GA EAEWNAKFAEYEKKY EEAAE KSI++G+L
Sbjct: 357 QNLGWPYEPFHVPEDVKQHWSRHTPAGAAFEAEWNAKFAEYEKKYSEEAAELKSIANGEL 416
Query: 392 PAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQ 451
PAGWEKALPTYTPESPA+ATRNLSQ LNAL K LPGLLGGSADLASSNMTLLKMFGDFQ
Sbjct: 417 PAGWEKALPTYTPESPADATRNLSQQNLNALVKVLPGLLGGSADLASSNMTLLKMFGDFQ 476
Query: 452 KDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGV 511
KDTPEERNVRFGVREHGMGAICNGIALH PGLIPYCATFFVFTDYMRAA+RISAL EAGV
Sbjct: 477 KDTPEERNVRFGVREHGMGAICNGIALHCPGLIPYCATFFVFTDYMRAAMRISALSEAGV 536
Query: 512 IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSI 571
IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAV NRKRPSI
Sbjct: 537 IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVLNRKRPSI 596
Query: 572 LALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGG 631
LALSRQKLP L GTSI+GVEKG YIISDNSS NKPDVILIGTGSELEIAAKAAEELRK G
Sbjct: 597 LALSRQKLPQLPGTSIEGVEKGGYIISDNSSSNKPDVILIGTGSELEIAAKAAEELRKEG 656
Query: 632 KAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRF 691
KAVRVVSFVSWELFDEQSDAYKESVLPAAV ARVSIEAGSTFGWEKIVG KGKAIGIDRF
Sbjct: 657 KAVRVVSFVSWELFDEQSDAYKESVLPAAVEARVSIEAGSTFGWEKIVGDKGKAIGIDRF 716
Query: 692 GASAPAGKIYKEFGITAEAVITAAKEV 718
GASAPAGKIYKE+GIT EAVI AAKEV
Sbjct: 717 GASAPAGKIYKEYGITTEAVIAAAKEV 743
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118481093|gb|ABK92500.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1261 bits (3262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/747 (83%), Positives = 662/747 (88%), Gaps = 33/747 (4%)
Query: 1 MASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRR 60
MAS+SS TLSQALL R SHH Q + LS +SLP+FSGLKST+S+ R T+
Sbjct: 1 MASTSSLTLSQALLARAISHHATDQRRDSR---LSLVSLPAFSGLKSTTSTASRATTTTN 57
Query: 61 RLSTSQASLPIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPM 120
R + +RAAAVETL+ +T+ +LVEKSVNTIRFLA+DAVEKANSGHPGLPMGCAPM
Sbjct: 58 RRRRVSSRH-VRAAAVETLDATTETSLVEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPM 116
Query: 121 GHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGS 180
GHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV+E+DLK+FRQWGS
Sbjct: 117 GHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKSFRQWGS 176
Query: 181 KTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGD 240
+TPGHPENFETPG+EVTTGPLGQG+ANAVGLALAEKHLAAR+NKPD+EIVDHYTY ILGD
Sbjct: 177 RTPGHPENFETPGVEVTTGPLGQGVANAVGLALAEKHLAARFNKPDSEIVDHYTYAILGD 236
Query: 241 GCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV 300
GCQMEGI+NEA SLA H GLGKLIAFYDDNHISIDGDTEIAFTE+VDKRFEGLGWHVIWV
Sbjct: 237 GCQMEGISNEACSLAAHWGLGKLIAFYDDNHISIDGDTEIAFTEDVDKRFEGLGWHVIWV 296
Query: 301 -----------------------------TTTIGFGSPNKANSYSVHGSALGAKEVDATR 331
TTTIG+GSPNKANSYSVHGSALGAKEVDATR
Sbjct: 297 KNGNNGYDEIRAAIKEAKAVKDKPTLIKVTTTIGYGSPNKANSYSVHGSALGAKEVDATR 356
Query: 332 KNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQL 391
+NLGWP+EPFHVPEDVK+HWSRH+ GA EAEWN KFAEYEKKY EEAAEFKSI +G+L
Sbjct: 357 QNLGWPFEPFHVPEDVKQHWSRHIPAGAAFEAEWNTKFAEYEKKYSEEAAEFKSIMTGEL 416
Query: 392 PAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQ 451
P GWEKALPTYTPESPA+ATRNLSQ LNALAK LPGLLGGSADLASSNMTLLKMFGDFQ
Sbjct: 417 PTGWEKALPTYTPESPADATRNLSQQNLNALAKVLPGLLGGSADLASSNMTLLKMFGDFQ 476
Query: 452 KDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGV 511
KDTPEERNVRFGVREHGMG+ICNGIALHSPGLIPYCATFFVFTDYMR AIRISAL EAGV
Sbjct: 477 KDTPEERNVRFGVREHGMGSICNGIALHSPGLIPYCATFFVFTDYMRGAIRISALSEAGV 536
Query: 512 IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSI 571
IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAV N KRPSI
Sbjct: 537 IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVLNSKRPSI 596
Query: 572 LALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGG 631
LALSRQKLP L GTSI+GVEKG YIISDNSSGNKPDVIL+GTGSELEIAAKAAEELRK G
Sbjct: 597 LALSRQKLPQLPGTSIEGVEKGGYIISDNSSGNKPDVILMGTGSELEIAAKAAEELRKEG 656
Query: 632 KAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRF 691
KAVRVVSFVSWELFDEQS AYKESVLPAAV+ARVSIEAGSTFGW+K+VG+KGKAIGIDRF
Sbjct: 657 KAVRVVSFVSWELFDEQSVAYKESVLPAAVTARVSIEAGSTFGWQKLVGAKGKAIGIDRF 716
Query: 692 GASAPAGKIYKEFGITAEAVITAAKEV 718
GASAPAGKIYKEFGITAEAVI AAKEV
Sbjct: 717 GASAPAGKIYKEFGITAEAVIAAAKEV 743
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576867|ref|XP_003556551.1| PREDICTED: transketolase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1251 bits (3238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/747 (82%), Positives = 652/747 (87%), Gaps = 37/747 (4%)
Query: 1 MASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRR 60
MAS+SS LSQALL R HG S R+ +LS PSFSGLKS S +SRR
Sbjct: 1 MASTSSLHLSQALLARAVYLHG----SSSDRV---SLSFPSFSGLKSHSPCKAAATSSRR 53
Query: 61 RLSTSQASLPIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPM 120
R + + S+ +RAAAVETL+ +T+ +LVEKSVNTIRFLA+DAVEKANSGHPGLPMGCAPM
Sbjct: 54 RGACASTSV-VRAAAVETLDQTTEVSLVEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPM 112
Query: 121 GHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGS 180
GHILYDEVMRYNPKNP WFNRDRF+LSAGHGCMLQYALLHLAGYDSV E+DLK FRQWGS
Sbjct: 113 GHILYDEVMRYNPKNPTWFNRDRFILSAGHGCMLQYALLHLAGYDSVLEEDLKEFRQWGS 172
Query: 181 KTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGD 240
+TPGHPENFET GIEVTTGPLGQG+ANAVGLALAEKHLAAR+NKPDNEIVDHYTYVILGD
Sbjct: 173 RTPGHPENFETVGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDNEIVDHYTYVILGD 232
Query: 241 GCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV 300
GCQMEGI+NEA SLAGH GLGKLIA YDDNHISIDGDTEIAFTENVD+RFE LGWHVIWV
Sbjct: 233 GCQMEGISNEACSLAGHWGLGKLIALYDDNHISIDGDTEIAFTENVDQRFEALGWHVIWV 292
Query: 301 -----------------------------TTTIGFGSPNKANSYSVHGSALGAKEVDATR 331
TTTIGFGSPNKANSYSVHGSALG KEVDATR
Sbjct: 293 KNGNTGYDEIRAAIKEAKAVKDKPTMIKVTTTIGFGSPNKANSYSVHGSALGTKEVDATR 352
Query: 332 KNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQL 391
KNLGWPYEPFHVPEDVKKHWSRH EGA LEAEWNAKFAEYEKKY EEAAE K+I +G+L
Sbjct: 353 KNLGWPYEPFHVPEDVKKHWSRHTPEGAKLEAEWNAKFAEYEKKYSEEAAELKAIITGEL 412
Query: 392 PAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQ 451
PAGWEKALPTYTPESPA+ATRNLSQ LNAL K LPGLLGGSADLASSNMTLLK +GDFQ
Sbjct: 413 PAGWEKALPTYTPESPADATRNLSQQNLNALVKVLPGLLGGSADLASSNMTLLKSYGDFQ 472
Query: 452 KDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGV 511
K+TPEERNVRFGVREHGMGAICNGIALHSPG IPYCATFFVFTDYMRAAIRISALCEAGV
Sbjct: 473 KNTPEERNVRFGVREHGMGAICNGIALHSPGFIPYCATFFVFTDYMRAAIRISALCEAGV 532
Query: 512 IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSI 571
IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN LMLRPADGNETAG+YKVAV NRKRPSI
Sbjct: 533 IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNTLMLRPADGNETAGSYKVAVVNRKRPSI 592
Query: 572 LALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGG 631
LALSRQKL L GTSI+GVEKG YIISDNSSGNKPDVILIGTGSELEIAA AAE+LRK G
Sbjct: 593 LALSRQKLTQLPGTSIEGVEKGGYIISDNSSGNKPDVILIGTGSELEIAAAAAEDLRKEG 652
Query: 632 KAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRF 691
KAVRVVSFVSWELFDEQSD YKESVLPA+V+ RVSIEAGSTFGW+KIVGS+GKAIGIDRF
Sbjct: 653 KAVRVVSFVSWELFDEQSDEYKESVLPASVTVRVSIEAGSTFGWQKIVGSQGKAIGIDRF 712
Query: 692 GASAPAGKIYKEFGITAEAVITAAKEV 718
GASAPAGKIYKEFGIT EAVI AAKE+
Sbjct: 713 GASAPAGKIYKEFGITKEAVIAAAKEL 739
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432267|ref|XP_004133921.1| PREDICTED: transketolase, chloroplastic-like [Cucumis sativus] gi|449480047|ref|XP_004155784.1| PREDICTED: transketolase, chloroplastic-like [Cucumis sativus] gi|351735634|gb|AEQ59483.1| chloroplast transketolase [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1249 bits (3232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/747 (81%), Positives = 650/747 (87%), Gaps = 35/747 (4%)
Query: 1 MASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRR 60
MAS+SS TLSQALL+R S HG SS+ LS+P+FSGLKST L R
Sbjct: 1 MASTSSLTLSQALLSREISRHGSNSSSDR-----VPLSIPTFSGLKSTKPPRLTGSAHRP 55
Query: 61 RLSTSQASLPIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPM 120
R + + + +RAA ETL T+ + ALVEKS+NTIRFLA+DAVEKANSGHPGLPMGCAPM
Sbjct: 56 RATHYRRQI-VRAAIAETLGTTAETALVEKSINTIRFLAIDAVEKANSGHPGLPMGCAPM 114
Query: 121 GHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGS 180
GHILYDEVM+YNPKNPYWFNRDRF+LSAGHGCMLQYALLHLAGYDSV+E+DLK+FRQW S
Sbjct: 115 GHILYDEVMKYNPKNPYWFNRDRFILSAGHGCMLQYALLHLAGYDSVREEDLKSFRQWES 174
Query: 181 KTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGD 240
+TPGHPENFETPG+EVTTGPLGQG+ANAVGLALAEKHLAAR+NKPD+EIVDHYTYVILGD
Sbjct: 175 RTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGD 234
Query: 241 GCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV 300
GCQMEGIANEA SLAGH GLGKLIA YDDNHISIDGDTEIAFTE+VD RFEGLGWHVIWV
Sbjct: 235 GCQMEGIANEACSLAGHWGLGKLIALYDDNHISIDGDTEIAFTESVDTRFEGLGWHVIWV 294
Query: 301 -----------------------------TTTIGFGSPNKANSYSVHGSALGAKEVDATR 331
TTTIGFGSPNKANSYSVHGSALGAKEV+ATR
Sbjct: 295 KNGNTGYDEIRAAIQEAKAVKDKPTMIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATR 354
Query: 332 KNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQL 391
NLGWPYEPFHVPEDV+KHWSRH GA EAEWNAKFAEYEKKYPEEAAE KSI +G+L
Sbjct: 355 SNLGWPYEPFHVPEDVQKHWSRHTPLGADFEAEWNAKFAEYEKKYPEEAAELKSIITGEL 414
Query: 392 PAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQ 451
PAGWE ALP YTPESP +ATRNLSQ CLNALAK LPG LGGSADLASSNMTLLKM+GDFQ
Sbjct: 415 PAGWEDALPKYTPESPGDATRNLSQQCLNALAKVLPGFLGGSADLASSNMTLLKMYGDFQ 474
Query: 452 KDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGV 511
K+TPEERN+RFGVREHGMGAICNGIALHSPG IPYCATFFVFTDYMRAA+RISAL EAGV
Sbjct: 475 KNTPEERNLRFGVREHGMGAICNGIALHSPGFIPYCATFFVFTDYMRAAMRISALSEAGV 534
Query: 512 IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSI 571
IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILM RPADGNETAGAYKVAV NRKRPSI
Sbjct: 535 IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMFRPADGNETAGAYKVAVVNRKRPSI 594
Query: 572 LALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGG 631
+ALSRQKLPHL GTSI+GVEKG YI+SDNSSGNKPDVILIGTGSELEIA +A EELRK G
Sbjct: 595 MALSRQKLPHLPGTSIEGVEKGGYIVSDNSSGNKPDVILIGTGSELEIAFQAGEELRKEG 654
Query: 632 KAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRF 691
KAVRVVSFVSWELFD+QSDAYKESVLP AV+ARVSIEAGSTFGW KIVGSKGKAIGIDRF
Sbjct: 655 KAVRVVSFVSWELFDDQSDAYKESVLPEAVTARVSIEAGSTFGWGKIVGSKGKAIGIDRF 714
Query: 692 GASAPAGKIYKEFGITAEAVITAAKEV 718
GASAPAGKIYKEFG+T EAV+ AA+E+
Sbjct: 715 GASAPAGKIYKEFGLTVEAVVAAAREL 741
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536526|ref|XP_003536788.1| PREDICTED: transketolase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1246 bits (3224), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 616/747 (82%), Positives = 648/747 (86%), Gaps = 35/747 (4%)
Query: 1 MASSSSFTLSQALLTRGTSHHGFTQSSEHHRLALSTLSLPSFSGLKSTSSSTLRTPTSRR 60
MASSSS LSQALL R HG + S +LS PSFSGLKS S+ TS R
Sbjct: 1 MASSSSLHLSQALLARAVYLHGSSSSDR------VSLSFPSFSGLKSHSTCKAAAATSSR 54
Query: 61 RLSTSQASLPIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPM 120
R ++ +RAAAVETL+ +T+ +LVEKSVNTIRFLA+DAVEKANSGHPGLPMGCAPM
Sbjct: 55 RRGACPSTNVVRAAAVETLDQTTEVSLVEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPM 114
Query: 121 GHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGS 180
GHILYDE+MRYNPKNP WFNRDRFVLSAGHGCMLQYALLHLAGYD+VQE DLK FRQWGS
Sbjct: 115 GHILYDEIMRYNPKNPAWFNRDRFVLSAGHGCMLQYALLHLAGYDTVQEQDLKEFRQWGS 174
Query: 181 KTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGD 240
+TPGHPENFET G+EVTTGPLGQG+ANAVGLALAEKHLAAR+NKPDNEIVDHYTYVILGD
Sbjct: 175 RTPGHPENFETLGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDNEIVDHYTYVILGD 234
Query: 241 GCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV 300
GCQMEGI+NEA SLAGH GLGKLIA YDDNHISIDGDTEIAFTENVD+RFE LGWHVIWV
Sbjct: 235 GCQMEGISNEACSLAGHWGLGKLIALYDDNHISIDGDTEIAFTENVDQRFEALGWHVIWV 294
Query: 301 -----------------------------TTTIGFGSPNKANSYSVHGSALGAKEVDATR 331
TTTIGFGSPNKANSYSVHGSALGAKEVDATR
Sbjct: 295 KNGNTGYDEIRAAIKEAKAVKDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVDATR 354
Query: 332 KNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQL 391
KNLGWPYEPFHVPEDVKKHWSRH EGA LEAEWNAKF EYEK+Y EEAAE K+I +G+L
Sbjct: 355 KNLGWPYEPFHVPEDVKKHWSRHTPEGAKLEAEWNAKFVEYEKQYSEEAAELKAIITGEL 414
Query: 392 PAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQ 451
PAGWEKALPTYTPESPA+ATRNLSQ LNAL K LPGLLGGSADLASSNMTLLK +GDFQ
Sbjct: 415 PAGWEKALPTYTPESPADATRNLSQQNLNALVKVLPGLLGGSADLASSNMTLLKSYGDFQ 474
Query: 452 KDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGV 511
K+TPEERNVRFGVREHGMGAICNGIALHSPG IPYCATFFVFTDYMRAAIRISALCEAGV
Sbjct: 475 KNTPEERNVRFGVREHGMGAICNGIALHSPGFIPYCATFFVFTDYMRAAIRISALCEAGV 534
Query: 512 IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSI 571
IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN LMLRPADGNETAG+YKVAV NRKRPSI
Sbjct: 535 IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNTLMLRPADGNETAGSYKVAVVNRKRPSI 594
Query: 572 LALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGG 631
LALSRQKL L GTSI+GVEKG Y ISDNSSGNKPDVILIGTGSELEIAA AAE+LRK G
Sbjct: 595 LALSRQKLTQLPGTSIEGVEKGGYTISDNSSGNKPDVILIGTGSELEIAAAAAEDLRKEG 654
Query: 632 KAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRF 691
KAVRVVSFVSWELFDEQSD YKESVLPA+V+ARVSIEAGSTFGW KIVGSKGKAIGIDRF
Sbjct: 655 KAVRVVSFVSWELFDEQSDEYKESVLPASVTARVSIEAGSTFGWHKIVGSKGKAIGIDRF 714
Query: 692 GASAPAGKIYKEFGITAEAVITAAKEV 718
GASAPAGKIYKEFGIT EAVI AAKE+
Sbjct: 715 GASAPAGKIYKEFGITKEAVIAAAKEL 741
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356506190|ref|XP_003521870.1| PREDICTED: transketolase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1219 bits (3153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/702 (85%), Positives = 631/702 (89%), Gaps = 40/702 (5%)
Query: 52 TLR-TPTS---RRRLSTSQASLPIRAAA-VETLETST-DAALVEKSVNTIRFLAVDAVEK 105
TLR TP + RRRL+TS IRAAA V+T+E +T DAALVEKSVNTIRFLA+DAVEK
Sbjct: 34 TLRPTPPALSLRRRLTTS-----IRAAASVKTVEKATADAALVEKSVNTIRFLAIDAVEK 88
Query: 106 ANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD 165
ANSGHPGLPMGCAPMGH+LYDE M+YNPKNP+WFNRDRFVLSAGHGCMLQYALLHLAG+D
Sbjct: 89 ANSGHPGLPMGCAPMGHVLYDETMKYNPKNPFWFNRDRFVLSAGHGCMLQYALLHLAGFD 148
Query: 166 SVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKP 225
SV+E+DL+ FRQWGS+TPGHPENFETPGIEVTTGPLGQG+ANAVGLALAEKHLAARYNKP
Sbjct: 149 SVKEEDLREFRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARYNKP 208
Query: 226 DNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTEN 285
DNEIVDHYTY ILGDGCQMEGIANEA SLAGH GLGKLIAFYDDNHISIDG+TEIAFTE+
Sbjct: 209 DNEIVDHYTYAILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGNTEIAFTES 268
Query: 286 VDKRFEGLGWHVIWV-----------------------------TTTIGFGSPNKANSYS 316
VD RFEGLGWHVIWV TTTIG+GSPNKANSYS
Sbjct: 269 VDSRFEGLGWHVIWVKNGNNGYDDIRAAIKEAKAVKDKPTLIKVTTTIGYGSPNKANSYS 328
Query: 317 VHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKY 376
VHGSALGAKEVDATR+NLGW +EPFHVPEDVKKHWSRH EGA LEAEWNAKFAEYEKKY
Sbjct: 329 VHGSALGAKEVDATRQNLGWSHEPFHVPEDVKKHWSRHTPEGAALEAEWNAKFAEYEKKY 388
Query: 377 PEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADL 436
EEAAE KSI +G+ PAGWEKALPTYTPESPA+ATRNLSQT LNALAK LPGLLGGSADL
Sbjct: 389 KEEAAELKSIINGEFPAGWEKALPTYTPESPADATRNLSQTNLNALAKVLPGLLGGSADL 448
Query: 437 ASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDY 496
ASSNMTLLKMFGDFQKDTP ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDY
Sbjct: 449 ASSNMTLLKMFGDFQKDTPAERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDY 508
Query: 497 MRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETA 556
MR AIR+SAL EAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETA
Sbjct: 509 MRGAIRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETA 568
Query: 557 GAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSE 616
GAYKVAV NRKRPSILALSRQKLP L GTSI+GVEKG Y ISDNS+GNKPDVILIGTGSE
Sbjct: 569 GAYKVAVLNRKRPSILALSRQKLPQLPGTSIEGVEKGGYTISDNSTGNKPDVILIGTGSE 628
Query: 617 LEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWE 676
LEIAAKAA++LRK GKAVRVVS VSWELFDEQS+AYKESV PAAVSARVSIEAGSTFGWE
Sbjct: 629 LEIAAKAADDLRKEGKAVRVVSLVSWELFDEQSEAYKESVFPAAVSARVSIEAGSTFGWE 688
Query: 677 KIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718
KIVG+KGKAIGIDRFGASAPAG+IYKEFGIT EAV+ AAKE+
Sbjct: 689 KIVGAKGKAIGIDRFGASAPAGRIYKEFGITKEAVVAAAKEL 730
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 719 | ||||||
| UNIPROTKB|Q43848 | 741 | Q43848 "Transketolase, chlorop | 0.586 | 0.569 | 0.805 | 3.3e-301 | |
| TAIR|locus:2050837 | 741 | AT2G45290 [Arabidopsis thalian | 0.586 | 0.569 | 0.781 | 3.4e-299 | |
| TAIR|locus:2101871 | 741 | AT3G60750 [Arabidopsis thalian | 0.584 | 0.566 | 0.785 | 1.9e-298 | |
| UNIPROTKB|O20250 | 741 | O20250 "Transketolase, chlorop | 0.588 | 0.570 | 0.775 | 1.2e-292 | |
| TIGR_CMR|BA_3744 | 666 | BA_3744 "transketolase" [Bacil | 0.582 | 0.629 | 0.468 | 3.7e-172 | |
| TIGR_CMR|DET_0644 | 666 | DET_0644 "transketolase" [Deha | 0.559 | 0.603 | 0.463 | 1.1e-168 | |
| TIGR_CMR|DET_0678 | 666 | DET_0678 "transketolase" [Deha | 0.559 | 0.603 | 0.463 | 1.1e-168 | |
| UNIPROTKB|G4MRY4 | 687 | MGG_02471 "Transketolase" [Mag | 0.606 | 0.634 | 0.414 | 6.5e-164 | |
| ASPGD|ASPL0000053784 | 684 | AN0688 [Emericella nidulans (t | 0.296 | 0.311 | 0.682 | 4.6e-161 | |
| UNIPROTKB|Q9KLW7 | 664 | tkt2 "Transketolase 2" [Vibrio | 0.581 | 0.629 | 0.441 | 3.7e-159 |
| UNIPROTKB|Q43848 Q43848 "Transketolase, chloroplastic" [Solanum tuberosum (taxid:4113)] | Back alignment and assigned GO terms |
|---|
Score = 1755 (622.8 bits), Expect = 3.3e-301, Sum P(2) = 3.3e-301
Identities = 340/422 (80%), Positives = 358/422 (84%)
Query: 297 VIWVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVA 356
+I VTTTIGFGSPNKANSYSVHGS LGAKEV+ATR NLGWPYEPFHVPEDVK HWSRH
Sbjct: 319 MIKVTTTIGFGSPNKANSYSVHGSGLGAKEVEATRNNLGWPYEPFHVPEDVKSHWSRHTP 378
Query: 357 EGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQ 416
EGA LE EWN SI +G+LPAGWEKALPTYTPESPA+ATRNLSQ
Sbjct: 379 EGAALETEWNAKFAEYEKKYAEEAADLKSIITGELPAGWEKALPTYTPESPADATRNLSQ 438
Query: 417 TCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGI 476
LNALAK LPG LGGSADLASSNMTLLKMFGDFQK+TPEERN+RFGVREHGMGAICNGI
Sbjct: 439 QNLNALAKVLPGFLGGSADLASSNMTLLKMFGDFQKNTPEERNLRFGVREHGMGAICNGI 498
Query: 477 ALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536
ALHS GLIPYCATFFVFTDYMR A+RISAL EAGVIYVMTHDSIGLGEDGPTHQPIEHLA
Sbjct: 499 ALHSLGLIPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 558
Query: 537 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYI 596
SFRAMPNILM RPADGNETAGAYKVAV RK PSILALSRQKLP LAGTSI+G KG YI
Sbjct: 559 SFRAMPNILMFRPADGNETAGAYKVAVLKRKTPSILALSRQKLPQLAGTSIEGAAKGGYI 618
Query: 597 ISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESV 656
+SDNSSGNKPDVILIGTGS +K GK VRVVSFV WEL+DEQS YKESV
Sbjct: 619 VSDNSSGNKPDVILIGTGSELEIAVKAAEELKKEGKTVRVVSFVCWELYDEQSAEYKESV 678
Query: 657 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 716
LP++V+ARVSIEAGSTFGW+K VG KGKAIGID FGASAPA KIYKEFGITAEAV+ AAK
Sbjct: 679 LPSSVTARVSIEAGSTFGWQKFVGDKGKAIGIDGFGASAPADKIYKEFGITAEAVVAAAK 738
Query: 717 EV 718
+V
Sbjct: 739 QV 740
|
|
| TAIR|locus:2050837 AT2G45290 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1735 (615.8 bits), Expect = 3.4e-299, Sum P(2) = 3.4e-299
Identities = 330/422 (78%), Positives = 357/422 (84%)
Query: 297 VIWVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVA 356
+I VTTTIG+GSPNKANSYSVHG+ALG KEV+ATR NLGWPYEPFHVPEDVK HWSRH
Sbjct: 319 LIKVTTTIGYGSPNKANSYSVHGAALGEKEVEATRNNLGWPYEPFHVPEDVKSHWSRHTP 378
Query: 357 EGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQ 416
EGA LEA+WN SI SG+LP GWEKALPTYTP+SP +ATRNLSQ
Sbjct: 379 EGAALEADWNAKFAAYEKKYPEEAAELKSIISGELPVGWEKALPTYTPDSPGDATRNLSQ 438
Query: 417 TCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGI 476
CLNALAK +PG LGGSADLASSNMT+LK FG+FQK TPEERN+RFGVREHGMGAICNGI
Sbjct: 439 QCLNALAKAVPGFLGGSADLASSNMTMLKAFGNFQKATPEERNLRFGVREHGMGAICNGI 498
Query: 477 ALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536
ALHSPG IPYCATFFVFTDYMRAA+RISAL EAGVIYVMTHDSIGLGEDGPTHQPIEHL+
Sbjct: 499 ALHSPGFIPYCATFFVFTDYMRAAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLS 558
Query: 537 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYI 596
SFRAMPNI+M RPADGNETAGAYK+AV RK PS+LALSRQKLP L GTSI+ VEKG Y
Sbjct: 559 SFRAMPNIMMFRPADGNETAGAYKIAVTKRKTPSVLALSRQKLPQLPGTSIESVEKGGYT 618
Query: 597 ISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESV 656
ISDNS+GNKPDVILIGTGS R+ GK+VRVVSFV WELFDEQSDAYKESV
Sbjct: 619 ISDNSTGNKPDVILIGTGSELEIAAQAAEKLREQGKSVRVVSFVCWELFDEQSDAYKESV 678
Query: 657 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 716
LP+ VSARVSIEAGSTFGW KIVG KGK+IGID FGASAPAGK+YKEFGIT EA++ AAK
Sbjct: 679 LPSDVSARVSIEAGSTFGWGKIVGGKGKSIGIDTFGASAPAGKLYKEFGITIEAMVEAAK 738
Query: 717 EV 718
+
Sbjct: 739 SL 740
|
|
| TAIR|locus:2101871 AT3G60750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1719 (610.2 bits), Expect = 1.9e-298, Sum P(2) = 1.9e-298
Identities = 330/420 (78%), Positives = 353/420 (84%)
Query: 297 VIWVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVA 356
+I VTTTIG+GSPNKANSYSVHG+ALG KEV+ATR NLGWPYEPF VP+DVK HWSRH
Sbjct: 319 LIKVTTTIGYGSPNKANSYSVHGAALGEKEVEATRNNLGWPYEPFQVPDDVKSHWSRHTP 378
Query: 357 EGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQ 416
EGATLE++W+ SI +G+LPAGWEKALPTYTPESP +ATRNLSQ
Sbjct: 379 EGATLESDWSAKFAAYEKKYPEEASELKSIITGELPAGWEKALPTYTPESPGDATRNLSQ 438
Query: 417 TCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGI 476
CLNALAK +PG LGGSADLASSNMTLLK FGDFQK TPEERN+RFGVREHGMGAICNGI
Sbjct: 439 QCLNALAKVVPGFLGGSADLASSNMTLLKAFGDFQKATPEERNLRFGVREHGMGAICNGI 498
Query: 477 ALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536
ALHSPGLIPYCATFFVFTDYMR A+RISAL EAGVIYVMTHDSIGLGEDGPTHQPIEH+A
Sbjct: 499 ALHSPGLIPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHIA 558
Query: 537 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYI 596
SFRAMPN LM RPADGNETAGAYK+AV RK PSILALSRQKLPHL GTSI+GVEKG Y
Sbjct: 559 SFRAMPNTLMFRPADGNETAGAYKIAVTKRKTPSILALSRQKLPHLPGTSIEGVEKGGYT 618
Query: 597 ISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESV 656
ISD+SSGNKPDVILIGTGS RK GK VRVVSFV WELFDEQSD YKESV
Sbjct: 619 ISDDSSGNKPDVILIGTGSELEIAAQAAEVLRKDGKTVRVVSFVCWELFDEQSDEYKESV 678
Query: 657 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 716
LP+ VSARVSIEA STFGW KIVG KGK+IGI+ FGASAPA +YKEFGIT EAV+ AAK
Sbjct: 679 LPSDVSARVSIEAASTFGWGKIVGGKGKSIGINSFGASAPAPLLYKEFGITVEAVVDAAK 738
|
|
| UNIPROTKB|O20250 O20250 "Transketolase, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 1721 (610.9 bits), Expect = 1.2e-292, Sum P(2) = 1.2e-292
Identities = 328/423 (77%), Positives = 361/423 (85%)
Query: 297 VIWVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVA 356
+I VTTTIGFGSPNK+NSYSVHGSALG+KEV+ATR+NLGWPYEPFHVPE+VKKHWSRH
Sbjct: 319 LIKVTTTIGFGSPNKSNSYSVHGSALGSKEVEATRQNLGWPYEPFHVPEEVKKHWSRHTP 378
Query: 357 EGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQ 416
EGA+LEAEWN SI++G+ PAGWEKALPTYTPE+P +ATRNLSQ
Sbjct: 379 EGASLEAEWNTKFAEYEKKYPEDATEFKSITTGEFPAGWEKALPTYTPETPGDATRNLSQ 438
Query: 417 TCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGI 476
CLNALAK +PGLLGGSADLASSNMTLLKMFGDF++ ++ RFGVREHGMGAICNGI
Sbjct: 439 QCLNALAKVIPGLLGGSADLASSNMTLLKMFGDFRRTHRKKETFRFGVREHGMGAICNGI 498
Query: 477 ALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536
LHSPG +PYCATFFVFTDYMR A+RISAL EAGVIYVMTHDSIGLGEDGPTHQPIE L+
Sbjct: 499 CLHSPGFVPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEALS 558
Query: 537 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYI 596
F AMPNILMLRPADGNETAG+YKVAV NRK PSILALSR+KLP+L GTSI+GVEKG Y
Sbjct: 559 KFPAMPNILMLRPADGNETAGSYKVAVENRKTPSILALSRKKLPNLPGTSIEGVEKGGYT 618
Query: 597 ISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESV 656
I+DNSSGNKPDVILIGTGS RK GKAVRVVSFVSWELF++QSD YKESV
Sbjct: 619 ITDNSSGNKPDVILIGTGSELEIAAKAGDELRKEGKAVRVVSFVSWELFEKQSDEYKESV 678
Query: 657 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 716
LP+ V+ARVSIEAGSTFGW KIVGSKGKAIGID+FGASAPAGKIY+E+GIT EAV+ AAK
Sbjct: 679 LPSDVTARVSIEAGSTFGWHKIVGSKGKAIGIDKFGASAPAGKIYQEYGITVEAVVEAAK 738
Query: 717 EVC 719
VC
Sbjct: 739 SVC 741
|
|
| TIGR_CMR|BA_3744 BA_3744 "transketolase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 939 (335.6 bits), Expect = 3.7e-172, Sum P(2) = 3.7e-172
Identities = 200/427 (46%), Positives = 262/427 (61%)
Query: 297 VIWVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEP-FHVPEDVKKHWSRHV 355
+I V TTIGFGSPNK+ + HGS LG +E T++ W E FHV E+V +++ + V
Sbjct: 242 LIEVRTTIGFGSPNKSGKSASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTV 301
Query: 356 AE-GATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNL 414
+ G T +AEWN + +G LP GWE+ LPTY S A ATRN
Sbjct: 302 QDVGETAQAEWNTMLGEYAQAYPELANELQAAMNGLLPEGWEQNLPTYELGSKA-ATRNS 360
Query: 415 SQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICN 474
S +NA+A+++P GGSADLA SN T + DF +D +N+ +GVRE MGA N
Sbjct: 361 SGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAMN 420
Query: 475 GIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534
GIALH GL Y TFFVF+DY+R AIR++AL + V YV THDSI +GEDGPTH+PIE
Sbjct: 421 GIALHG-GLKTYGGTFFVFSDYLRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQ 479
Query: 535 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEK-- 592
LA+ RAMPN+ ++RPADGNE+ A+++A+ + +P+ L L+RQ LP L G D EK
Sbjct: 480 LAALRAMPNVSVIRPADGNESVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKVA 539
Query: 593 -GAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDA 651
GAY++S S DVIL+ TGS G VVS S + F+ Q+
Sbjct: 540 KGAYVVSA-SKKETADVILLATGSEVSLAVEAQKALAVDGVDASVVSMPSMDRFEAQTAE 598
Query: 652 YKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAV 711
YKESVLP AV+ R +IE G+TFGW + VG +G +GID FGASAP KI +E+G T E V
Sbjct: 599 YKESVLPKAVTKRFAIEMGATFGWHRYVGLEGDVLGIDTFGASAPGEKIMEEYGFTVENV 658
Query: 712 ITAAKEV 718
+ KE+
Sbjct: 659 VRKVKEM 665
|
|
| TIGR_CMR|DET_0644 DET_0644 "transketolase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 923 (330.0 bits), Expect = 1.1e-168, Sum P(2) = 1.1e-168
Identities = 190/410 (46%), Positives = 251/410 (61%)
Query: 302 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATL 361
T IGFGSPNKA S HG LG EV +RK+LGW YEPF +P + + + +G T
Sbjct: 248 TVIGFGSPNKAGKASAHGEPLGTDEVAKSRKSLGWDYEPFVIPPEALAEFRMALDKGKTA 307
Query: 362 EAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNA 421
+ W SG+LP W+ L + A A+R S +N
Sbjct: 308 QQVWQSKLDYYSSRYPEKAALLQDRLSGKLPDNWDNELDKLFDK--AMASREASGLIINT 365
Query: 422 LAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSP 481
LA LP L+GGSADL+ SN T++K G+++ E RN+ FGVREH MGAI NG+ALH
Sbjct: 366 LASRLPALMGGSADLSPSNKTVIKDGGEYEPPHYEGRNIHFGVREHAMGAIANGLALHG- 424
Query: 482 GLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAM 541
G+IPY ATF +F DYMR A+R+++L VIY+ THDSIGLGEDGPTHQPIE LA R++
Sbjct: 425 GIIPYVATFLIFYDYMRPAVRLASLMGQRVIYIFTHDSIGLGEDGPTHQPIEQLAGLRSV 484
Query: 542 PNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVE--KGAYIISD 599
P ++ +RPAD ETA A+K A+ + P+ +ALSRQKLP L + + V KGAYI+++
Sbjct: 485 PGLVTIRPADSYETAQAWKTAILRKDGPTAIALSRQKLPLLDNSQANSVNLAKGAYILAE 544
Query: 600 NSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPA 659
S +P V L+ +GS + G + RVVSF SW+LF+ Q Y++S+LPA
Sbjct: 545 TDS--RPQVALVASGSEVSIAVQAAEILKNKGVSSRVVSFPSWQLFEAQPRTYRQSILPA 602
Query: 660 AVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAE 709
++ RV IEAGS GW K +G+ G I ID FGASAPA +Y+ FG+T E
Sbjct: 603 SLP-RVIIEAGSAQGWCKYLGANGDIISIDHFGASAPAPVLYQHFGLTPE 651
|
|
| TIGR_CMR|DET_0678 DET_0678 "transketolase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 923 (330.0 bits), Expect = 1.1e-168, Sum P(2) = 1.1e-168
Identities = 190/410 (46%), Positives = 251/410 (61%)
Query: 302 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATL 361
T IGFGSPNKA S HG LG EV +RK+LGW YEPF +P + + + +G T
Sbjct: 248 TVIGFGSPNKAGKASAHGEPLGTDEVAKSRKSLGWDYEPFVIPPEALAEFRMALDKGKTA 307
Query: 362 EAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNA 421
+ W SG+LP W+ L + A A+R S +N
Sbjct: 308 QQVWQSKLDYYSSRYPEKAALLQDRLSGKLPDNWDNELDKLFDK--AMASREASGLIINT 365
Query: 422 LAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSP 481
LA LP L+GGSADL+ SN T++K G+++ E RN+ FGVREH MGAI NG+ALH
Sbjct: 366 LASRLPALMGGSADLSPSNKTVIKDGGEYEPPHYEGRNIHFGVREHAMGAIANGLALHG- 424
Query: 482 GLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAM 541
G+IPY ATF +F DYMR A+R+++L VIY+ THDSIGLGEDGPTHQPIE LA R++
Sbjct: 425 GIIPYVATFLIFYDYMRPAVRLASLMGQRVIYIFTHDSIGLGEDGPTHQPIEQLAGLRSV 484
Query: 542 PNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVE--KGAYIISD 599
P ++ +RPAD ETA A+K A+ + P+ +ALSRQKLP L + + V KGAYI+++
Sbjct: 485 PGLVTIRPADSYETAQAWKTAILRKDGPTAIALSRQKLPLLDNSQANSVNLAKGAYILAE 544
Query: 600 NSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPA 659
S +P V L+ +GS + G + RVVSF SW+LF+ Q Y++S+LPA
Sbjct: 545 TDS--RPQVALVASGSEVSIAVQAAEILKNKGVSSRVVSFPSWQLFEAQPRTYRQSILPA 602
Query: 660 AVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAE 709
++ RV IEAGS GW K +G+ G I ID FGASAPA +Y+ FG+T E
Sbjct: 603 SLP-RVIIEAGSAQGWCKYLGANGDIISIDHFGASAPAPVLYQHFGLTPE 651
|
|
| UNIPROTKB|G4MRY4 MGG_02471 "Transketolase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 838 (300.0 bits), Expect = 6.5e-164, Sum P(2) = 6.5e-164
Identities = 190/458 (41%), Positives = 262/458 (57%)
Query: 271 HISI--DGDTEIAFTENVDKRFEGLGWH--VIWVTTTIGFGSPNKANSYSVHGSALGAKE 326
H+ + DGD ++ E K+ + + +I + T IGFGS + ++ VHGS L A +
Sbjct: 214 HVEVVKDGDNDLEGIEAAIKKCQQVKDKPSLIQLRTIIGFGSTQQG-THGVHGSPLKADD 272
Query: 327 VDATRKNLGW-PYEPFHVPEDVKKHWSRHVAEGATLEAEWNXXXXXXXXXXXXXXXXXXS 385
+ ++ G+ P E F VP++V +++ AEGA LE EW+
Sbjct: 273 LKQLKEKFGFNPDESFAVPQEVYDLYNKKAAEGAALEQEWDQLFAKYGEQYKAEHDDLVR 332
Query: 386 ISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLK 445
+G+LP GWEK LPTYTP PA A+R LS+T L + +P L+GGSADL SN+T K
Sbjct: 333 RQTGELPQGWEKNLPTYTPSDPAIASRKLSETVLTKIEAAIPELVGGSADLTGSNLTRWK 392
Query: 446 MFGDFQKDTPE-------ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMR 498
DFQ + R +R+GVREHGMGAI NG+A + ++P+ TF F Y
Sbjct: 393 GAVDFQPPALKLGDSNYAGRYIRYGVREHGMGAIMNGLAAYGT-ILPFAGTFLNFVSYAA 451
Query: 499 AAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGA 558
A+R+SAL + +I+V THDSIGLGEDGPTHQPIE LA FRA+PN ++ RPADGNET+ A
Sbjct: 452 GAVRLSALSQVRMIWVATHDSIGLGEDGPTHQPIETLAHFRALPNCMVWRPADGNETSAA 511
Query: 559 YKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXX 618
Y VA+ ++ PSI+ALSRQ LP LAG++I+ KG Y+ + V L+ TGS
Sbjct: 512 YYVALTSKHTPSIIALSRQNLPQLAGSTIEKAIKGGYVAHEVEGAQ---VTLVSTGSEVG 568
Query: 619 XXXXXXXXXRKGGKA-VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEK 677
RVVS +E+FD QS Y+ SVLP + + +S+E ST GWE+
Sbjct: 569 ICIDAVKYLADNHNIKARVVSMPCFEVFDTQSKEYRLSVLPDGIPS-MSVEVMSTMGWER 627
Query: 678 IVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAA 715
+ G++RFGAS P +YK+F T E + A
Sbjct: 628 YTHEQ---FGLNRFGASGPYKDVYKKFEFTPEGIAKRA 662
|
|
| ASPGD|ASPL0000053784 AN0688 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 797 (285.6 bits), Expect = 4.6e-161, Sum P(2) = 4.6e-161
Identities = 146/214 (68%), Positives = 169/214 (78%)
Query: 87 LVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVL 146
L + ++NTIR LAVDA KANSGHPG PMG AP+ H+L+++ M++NPKNP W NRDRFVL
Sbjct: 6 LDQLAINTIRLLAVDATAKANSGHPGAPMGMAPVAHVLFNKFMKFNPKNPEWANRDRFVL 65
Query: 147 SAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMA 206
S GHGCMLQYALLHL GY + DDLK FRQ S TPGHPE +TPGIEVTTGPLGQG A
Sbjct: 66 SNGHGCMLQYALLHLFGY-GISMDDLKAFRQLDSITPGHPEAHDTPGIEVTTGPLGQGFA 124
Query: 207 NAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAF 266
NAVGLA+A+ H +NKP + D+YTY GDGC MEG+A+EA+S AGHL LG LIA
Sbjct: 125 NAVGLAIAQAHSGGVFNKPGYNLFDNYTYCFFGDGCAMEGVASEAASTAGHLKLGNLIAI 184
Query: 267 YDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV 300
YDDNHISIDGDT+ AFTE+V KRFE GWHV+WV
Sbjct: 185 YDDNHISIDGDTKCAFTEDVTKRFEAYGWHVVWV 218
|
|
| UNIPROTKB|Q9KLW7 tkt2 "Transketolase 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 862 (308.5 bits), Expect = 3.7e-159, Sum P(2) = 3.7e-159
Identities = 189/428 (44%), Positives = 244/428 (57%)
Query: 297 VIWVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVA 356
+I T IGFGSPNKA S+ HG+ LG E+ A R+ LGW Y PF +P D+ W A
Sbjct: 239 LICTKTIIGFGSPNKAGSHDCHGAPLGNDEIKAAREFLGWEYAPFEIPTDIYAAWDAKQA 298
Query: 357 EGATLEAEWNXXXXXXXXXXXXXXXXXXSISSGQLPAGWEKALPTYTPE---SPAE-ATR 412
GA+ EA W+ +G+LPA WE A +PA A+R
Sbjct: 299 -GASKEAAWDEKFAAYAKAYPAEAAEYKRRVAGELPANWEAATSEIIANLQANPANIASR 357
Query: 413 NLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAI 472
SQ L A K LP +GGSADLA SN+T+ + + +GVRE GM AI
Sbjct: 358 KASQNALEAFGKLLPEFMGGSADLAPSNLTMWSGSKSLTAEDASGNYIHYGVREFGMTAI 417
Query: 473 CNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPI 532
NGIALH G +PY ATF +F +Y R A+R++AL + I V THDSIGLGEDGPTHQP+
Sbjct: 418 INGIALHG-GFVPYGATFLMFMEYARNAMRMAALMKVQNIQVYTHDSIGLGEDGPTHQPV 476
Query: 533 EHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHL--AGTSIDGV 590
E +AS R PN+ RP D E+A A+K+A+ + PS L SRQ L + + +
Sbjct: 477 EQIASLRMTPNMSTWRPCDQVESAVAWKLAIERKDAPSALIFSRQNLAQQPRSAEQVANI 536
Query: 591 EKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSD 650
KG YI+ D +P++ILI TGS GKAVRVVS S + FD+Q
Sbjct: 537 AKGGYILKD--CAGQPELILIATGSEVELAVAAYEQLSAEGKAVRVVSMPSTDAFDKQDA 594
Query: 651 AYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEA 710
AY+E+VLPAAV+ R++IEAG W K VG G+ IG+ FG SAPAG+++K FG T E
Sbjct: 595 AYREAVLPAAVTKRIAIEAGIADFWYKYVGFGGRIIGMTSFGESAPAGELFKLFGFTTEN 654
Query: 711 VITAAKEV 718
V+ AKE+
Sbjct: 655 VVKQAKEL 662
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q7MDD4 | TKT2_VIBVY | 2, ., 2, ., 1, ., 1 | 0.5204 | 0.8636 | 0.9366 | yes | no |
| Q7SIC9 | TKTC_MAIZE | 2, ., 2, ., 1, ., 1 | 0.8244 | 0.8929 | 0.9511 | N/A | no |
| Q42675 | TKTA_CRAPL | 2, ., 2, ., 1, ., 1 | 0.7466 | 0.8803 | 0.9322 | N/A | no |
| Q42676 | TKTC_CRAPL | 2, ., 2, ., 1, ., 1 | 0.8301 | 0.6801 | 0.9421 | N/A | no |
| Q42677 | TKT7_CRAPL | 2, ., 2, ., 1, ., 1 | 0.7439 | 0.8803 | 0.9363 | N/A | no |
| Q7MHK7 | TKT1_VIBVY | 2, ., 2, ., 1, ., 1 | 0.5113 | 0.8636 | 0.9352 | yes | no |
| Q12630 | TKT1_KLULA | 2, ., 2, ., 1, ., 1 | 0.4984 | 0.8595 | 0.9101 | yes | no |
| P99161 | TKT_STAAN | 2, ., 2, ., 1, ., 1 | 0.4824 | 0.8581 | 0.9320 | yes | no |
| Q87LK8 | TKT1_VIBPA | 2, ., 2, ., 1, ., 1 | 0.5068 | 0.8636 | 0.9352 | yes | no |
| F4IW47 | TKTC2_ARATH | 2, ., 2, ., 1, ., 1 | 0.792 | 0.9847 | 0.9554 | yes | no |
| P57195 | TKT_BUCAI | 2, ., 2, ., 1, ., 1 | 0.4627 | 0.8581 | 0.9278 | yes | no |
| P34736 | TKT_PICST | 2, ., 2, ., 1, ., 1 | 0.5022 | 0.8636 | 0.9172 | yes | no |
| P66963 | TKT_STAAW | 2, ., 2, ., 1, ., 1 | 0.4824 | 0.8581 | 0.9320 | yes | no |
| P66962 | TKT_STAAM | 2, ., 2, ., 1, ., 1 | 0.4824 | 0.8581 | 0.9320 | yes | no |
| Q87GY4 | TKT2_VIBPA | 2, ., 2, ., 1, ., 1 | 0.5113 | 0.8636 | 0.9366 | yes | no |
| P57927 | TKT1_PASMU | 2, ., 2, ., 1, ., 1 | 0.4924 | 0.8664 | 0.9326 | yes | no |
| Q5HG77 | TKT_STAAC | 2, ., 2, ., 1, ., 1 | 0.4824 | 0.8581 | 0.9320 | yes | no |
| Q8D6H8 | TKT2_VIBVU | 2, ., 2, ., 1, ., 1 | 0.5159 | 0.8636 | 0.9366 | yes | no |
| P22976 | TKT_STRPN | 2, ., 2, ., 1, ., 1 | 0.5007 | 0.8678 | 0.9483 | yes | no |
| Q5E7R1 | TKT1_VIBF1 | 2, ., 2, ., 1, ., 1 | 0.4992 | 0.8636 | 0.9352 | yes | no |
| P21726 | TKTP_CUPNH | 2, ., 2, ., 1, ., 1 | 0.5060 | 0.8595 | 0.9223 | yes | no |
| Q6G9L6 | TKT_STAAS | 2, ., 2, ., 1, ., 1 | 0.4824 | 0.8581 | 0.9320 | yes | no |
| P21725 | TKTC_CUPNH | 2, ., 2, ., 1, ., 1 | 0.5052 | 0.8609 | 0.9238 | yes | no |
| Q43848 | TKTC_SOLTU | 2, ., 2, ., 1, ., 1 | 0.7912 | 0.9819 | 0.9527 | N/A | no |
| Q8RWV0 | TKTC1_ARATH | 2, ., 2, ., 1, ., 1 | 0.7860 | 0.9819 | 0.9527 | no | no |
| Q9KAD7 | TKT_BACHD | 2, ., 2, ., 1, ., 1 | 0.5287 | 0.8678 | 0.9369 | yes | no |
| P33570 | TKT2_ECOLI | 2, ., 2, ., 1, ., 1 | 0.5068 | 0.8636 | 0.9310 | N/A | no |
| Q8KA26 | TKT_BUCAP | 2, ., 2, ., 1, ., 1 | 0.4673 | 0.8581 | 0.9278 | yes | no |
| Q9URM2 | TKT_SCHPO | 2, ., 2, ., 1, ., 1 | 0.4548 | 0.8581 | 0.9007 | yes | no |
| O20250 | TKTC_SPIOL | 2, ., 2, ., 1, ., 1 | 0.7932 | 0.9485 | 0.9203 | N/A | no |
| Q8YRU9 | TKT_NOSS1 | 2, ., 2, ., 1, ., 1 | 0.625 | 0.8776 | 0.9417 | yes | no |
| Q5HPJ9 | TKT_STAEQ | 2, ., 2, ., 1, ., 1 | 0.4803 | 0.8650 | 0.9395 | yes | no |
| P45694 | TKT_BACSU | 2, ., 2, ., 1, ., 1 | 0.5135 | 0.8720 | 0.9400 | yes | no |
| Q8CPC7 | TKT_STAES | 2, ., 2, ., 1, ., 1 | 0.4803 | 0.8650 | 0.9395 | yes | no |
| Q9KLW7 | TKT2_VIBCH | 2, ., 2, ., 1, ., 1 | 0.5151 | 0.8636 | 0.9352 | yes | no |
| O67642 | TKT_AQUAE | 2, ., 2, ., 1, ., 1 | 0.4772 | 0.8650 | 0.9027 | yes | no |
| Q6GH64 | TKT_STAAR | 2, ., 2, ., 1, ., 1 | 0.4809 | 0.8581 | 0.9320 | yes | no |
| P23254 | TKT1_YEAST | 2, ., 2, ., 1, ., 1 | 0.4992 | 0.8595 | 0.9088 | yes | no |
| P57958 | TKT2_PASMU | 2, ., 2, ., 1, ., 1 | 0.4954 | 0.8664 | 0.9326 | yes | no |
| P43757 | TKT_HAEIN | 2, ., 2, ., 1, ., 1 | 0.5128 | 0.8636 | 0.9338 | yes | no |
| Q89AY2 | TKT_BUCBP | 2, ., 2, ., 1, ., 1 | 0.4708 | 0.8692 | 0.9384 | yes | no |
| Q8DCA2 | TKT1_VIBVU | 2, ., 2, ., 1, ., 1 | 0.5098 | 0.8636 | 0.9352 | yes | no |
| Q9KUP2 | TKT1_VIBCH | 2, ., 2, ., 1, ., 1 | 0.5151 | 0.8636 | 0.9338 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 719 | |||
| PLN02790 | 654 | PLN02790, PLN02790, transketolase | 0.0 | |
| COG0021 | 663 | COG0021, TktA, Transketolase [Carbohydrate transpo | 0.0 | |
| TIGR00232 | 653 | TIGR00232, tktlase_bact, transketolase, bacterial | 0.0 | |
| PTZ00089 | 661 | PTZ00089, PTZ00089, transketolase; Provisional | 0.0 | |
| PRK05899 | 586 | PRK05899, PRK05899, transketolase; Reviewed | 0.0 | |
| PRK12753 | 663 | PRK12753, PRK12753, transketolase; Reviewed | 0.0 | |
| PRK12754 | 663 | PRK12754, PRK12754, transketolase; Reviewed | 0.0 | |
| pfam00456 | 333 | pfam00456, Transketolase_N, Transketolase, thiamin | 1e-166 | |
| cd02012 | 255 | cd02012, TPP_TK, Thiamine pyrophosphate (TPP) fami | 1e-125 | |
| cd07033 | 156 | cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) bin | 2e-61 | |
| pfam02779 | 172 | pfam02779, Transket_pyr, Transketolase, pyrimidine | 6e-58 | |
| COG3959 | 243 | COG3959, COG3959, Transketolase, N-terminal subuni | 1e-51 | |
| smart00861 | 136 | smart00861, Transket_pyr, Transketolase, pyrimidin | 9e-37 | |
| COG3958 | 312 | COG3958, COG3958, Transketolase, C-terminal subuni | 2e-30 | |
| pfam02780 | 124 | pfam02780, Transketolase_C, Transketolase, C-termi | 2e-09 | |
| PRK05444 | 580 | PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate | 5e-09 | |
| COG1154 | 627 | COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [ | 8e-09 | |
| TIGR00204 | 617 | TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate syn | 1e-07 | |
| cd02017 | 386 | cd02017, TPP_E1_EcPDC_like, Thiamine pyrophosphate | 8e-07 | |
| PRK12571 | 641 | PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate | 4e-06 | |
| COG2609 | 887 | COG2609, AceE, Pyruvate dehydrogenase complex, deh | 8e-06 | |
| COG3957 | 793 | COG3957, COG3957, Phosphoketolase [Carbohydrate tr | 2e-05 | |
| cd00568 | 168 | cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) | 7e-05 | |
| PLN02582 | 677 | PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate | 0.002 | |
| PLN02234 | 641 | PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate | 0.002 |
| >gnl|CDD|215424 PLN02790, PLN02790, transketolase | Back alignment and domain information |
|---|
Score = 1338 bits (3465), Expect = 0.0
Identities = 543/654 (83%), Positives = 585/654 (89%), Gaps = 29/654 (4%)
Query: 95 IRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCML 154
IRFLA+DAV KANSGHPGLPMGCAPMGH+LYDEVM+YNPKNPYWFNRDRFVLSAGHGCML
Sbjct: 1 IRFLAIDAVNKANSGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCML 60
Query: 155 QYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALA 214
QYALLHLAGYDSVQ +DLK FRQWGS+TPGHPENFETPGIEVTTGPLGQG+ANAVGLALA
Sbjct: 61 QYALLHLAGYDSVQMEDLKQFRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALA 120
Query: 215 EKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274
EKHLAAR+NKPD++IVDHYTY ILGDGCQMEGI+NEA+SLAGH GLGKLI YDDNHISI
Sbjct: 121 EKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISI 180
Query: 275 DGDTEIAFTENVDKRFEGLGWHVIWV-----------------------------TTTIG 305
DGDTEIAFTE+VDKR+E LGWH IWV TTTIG
Sbjct: 181 DGDTEIAFTEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAVTDKPTLIKVTTTIG 240
Query: 306 FGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEW 365
+GSPNKANSYSVHG+ALG KEVDATRKNLGWPYEPFHVPEDVK HWS+H EGA LEAEW
Sbjct: 241 YGSPNKANSYSVHGAALGEKEVDATRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEW 300
Query: 366 NAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKT 425
NAKFAEY+KKYPEEAAE KS+ SG+LP+GWEKALPT+TPE PA+ATRNLSQ CLNALAK
Sbjct: 301 NAKFAEYKKKYPEEAAELKSLISGELPSGWEKALPTFTPEDPADATRNLSQKCLNALAKV 360
Query: 426 LPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIP 485
LPGL+GGSADLASSNMTLLK FGDFQKDTPEERNVRFGVREHGMGAICNGIALHS GLIP
Sbjct: 361 LPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSSGLIP 420
Query: 486 YCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNIL 545
YCATFFVFTDYMRAA+R+SAL EAGVIYVMTHDSIGLGEDGPTHQPIEHLAS RAMPNIL
Sbjct: 421 YCATFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNIL 480
Query: 546 MLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNK 605
MLRPADGNETAGAYKVAV NRKRP++LALSRQK+P+L GTSI+GVEKG Y+ISDNSSGNK
Sbjct: 481 MLRPADGNETAGAYKVAVTNRKRPTVLALSRQKVPNLPGTSIEGVEKGGYVISDNSSGNK 540
Query: 606 PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARV 665
PD+ILIGTGSELEIAAKAA+ELRK GK VRVVS V WELF+EQSD YKESVLP++V+ARV
Sbjct: 541 PDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARV 600
Query: 666 SIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 719
S+EAGSTFGWEK VGSKGK IG+DRFGASAPAG +YKEFG T E V+ AAK +
Sbjct: 601 SVEAGSTFGWEKYVGSKGKVIGVDRFGASAPAGILYKEFGFTVENVVAAAKSLL 654
|
Length = 654 |
| >gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 1038 bits (2687), Expect = 0.0
Identities = 374/658 (56%), Positives = 458/658 (69%), Gaps = 31/658 (4%)
Query: 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSA 148
+ N IRFL++DAV+KANSGHPG PMG A + ++L+ +++NP NP W NRDRFVLSA
Sbjct: 7 KLLANAIRFLSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSA 66
Query: 149 GHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANA 208
GHG ML Y+LLHL GYD + +DLKNFRQ GSKTPGHPE TPG+E TTGPLGQG+ANA
Sbjct: 67 GHGSMLLYSLLHLTGYD-LSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANA 125
Query: 209 VGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYD 268
VG+ALAEKHLAA +N+P +IVDHYTYV++GDGC MEG+++EA+SLAGHL LGKLI YD
Sbjct: 126 VGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYD 185
Query: 269 DNHISIDGDTEIAFTENVDKRFEGLGWHVIWV---------------------------- 300
N ISIDGDT ++FTE+V KRFE GW+VI V
Sbjct: 186 SNDISIDGDTSLSFTEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKASTDKPTLIIV 245
Query: 301 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGAT 360
T IG GSPNK ++ VHG+ LG +EV A +K LGW EPF VPE+V + GA
Sbjct: 246 KTIIGKGSPNKEGTHKVHGAPLGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAK 305
Query: 361 LEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLN 420
EA WN FA Y+KKYPE AAEF+ +G+LPA W LP + + ATR S LN
Sbjct: 306 AEAAWNELFAAYKKKYPELAAEFERRLNGELPANWAAFLPKFEANGKSIATRKASGKALN 365
Query: 421 ALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS 480
ALAK LP L+GGSADLA SN+T + GDF + R + FGVRE M AI NGIALH
Sbjct: 366 ALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHG 425
Query: 481 PGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 540
G IPY TF VF+DY R A+R++AL VIYV THDSIG+GEDGPTHQP+E LAS RA
Sbjct: 426 -GFIPYGGTFLVFSDYARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRA 484
Query: 541 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDN 600
+PN+ ++RPAD NETA A+K A+ + P+ L L+RQ LP L T ++GV KGAY++ D
Sbjct: 485 IPNLSVIRPADANETAAAWKYALERKDGPTALILTRQNLPVLERTDLEGVAKGAYVLKD- 543
Query: 601 SSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAA 660
S G PDVILI TGSE+E+A +AA+EL G VRVVS S+ELF++Q + Y+ESVLP A
Sbjct: 544 SGGEDPDVILIATGSEVELAVEAAKELEAEGIKVRVVSMPSFELFEKQDEEYRESVLPGA 603
Query: 661 VSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718
V+ARV+IEAGS GW K VG G IG+D FGASAP +++KEFG T E V+ AK +
Sbjct: 604 VTARVAIEAGSALGWYKYVGLDGAVIGMDSFGASAPGDELFKEFGFTVENVVAKAKSL 661
|
Length = 663 |
| >gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Score = 904 bits (2337), Expect = 0.0
Identities = 361/659 (54%), Positives = 448/659 (67%), Gaps = 36/659 (5%)
Query: 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSA 148
+K N IR LAVDA++KA SGHPG P+G AP+ +L+ + +++NP NP W NRDRFVLS
Sbjct: 1 KKLANAIRHLAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSN 60
Query: 149 GHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANA 208
GHG ML Y+LLHL GYD ED LK FRQ SKTPGHPE T G+E TTGPLGQG+ANA
Sbjct: 61 GHGSMLLYSLLHLTGYDLSIED-LKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANA 119
Query: 209 VGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYD 268
VG+A+A+K LAA +NKP EIVDHYTYV +GDGC EGI+ E +SLAGHL LGKLI YD
Sbjct: 120 VGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYD 179
Query: 269 DNHISIDGDTEIAFTENVDKRFEGLGWHVIW----------------------------V 300
N ISIDG + +FTE+V KRFE GW V+ V
Sbjct: 180 SNRISIDGAVDGSFTEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKASKDKPTLIEV 239
Query: 301 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAE-GA 359
TTTIGFGSPNKA ++ VHG+ LG ++V T+KNLGW Y PF VP++V H+ + V E GA
Sbjct: 240 TTTIGFGSPNKAGTHGVHGAPLGDEDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGA 299
Query: 360 TLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCL 419
E EWN FA Y+KKYPE AAEF SG+LPA W+K LP + + A ATR SQ L
Sbjct: 300 KAEQEWNELFAAYKKKYPELAAEFTRRLSGELPADWDKKLPEFKAKLQALATRKYSQNVL 359
Query: 420 NALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALH 479
NA+A LP LLGGSADLA SN+T K GD + P + +GVRE MGAI NGIALH
Sbjct: 360 NAIANVLPELLGGSADLAPSNLTKWKGSGDLH-ENPLGNYIHYGVREFAMGAIMNGIALH 418
Query: 480 SPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR 539
G PY TF +F DY R AIR++AL + VIYV THDSIG+GEDGPTHQPIE LAS R
Sbjct: 419 G-GFKPYGGTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLR 477
Query: 540 AMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISD 599
A+PN+ + RP DGNETA A+K A+ ++ P+ L LSRQ LP L +S++ V KG Y++ D
Sbjct: 478 AIPNLSVWRPCDGNETAAAWKYALESQDGPTALILSRQNLPQLEESSLEKVLKGGYVLKD 537
Query: 600 NSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPA 659
S PD+ILI TGSE+ +A +AA++L VRVVS S++LFD+Q + Y+ESVLPA
Sbjct: 538 --SKG-PDIILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPA 594
Query: 660 AVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718
V+ R+++EAG+ W K G G +G+D FG SAP K+++EFG T E V+ AK++
Sbjct: 595 NVT-RLAVEAGAADEWYKYAGLVGAILGMDSFGESAPGDKLFEEFGFTVENVVAKAKKL 652
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous [Energy metabolism, Pentose phosphate pathway]. Length = 653 |
| >gnl|CDD|173383 PTZ00089, PTZ00089, transketolase; Provisional | Back alignment and domain information |
|---|
Score = 899 bits (2325), Expect = 0.0
Identities = 352/664 (53%), Positives = 446/664 (67%), Gaps = 39/664 (5%)
Query: 84 DAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDR 143
D A+ EK N IR L+ D V+KANSGHPG PMG AP+ HIL+ EVM+YNPK+P W NRDR
Sbjct: 2 DGAIDEKCANEIRCLSADLVQKANSGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDR 61
Query: 144 FVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQ 203
FVLS GH L Y++LHL GYD + +DLKNFRQ GS+TPGHPE TPG+EVTTGPLGQ
Sbjct: 62 FVLSNGHASALLYSMLHLTGYD-LSMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQ 120
Query: 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKL 263
G+ANAVGLA+AEKHLAA++N+P + I D+Y YVI GDGC EG++ EA SLAGHLGL KL
Sbjct: 121 GIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKL 180
Query: 264 IAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHV-------------------------- 297
I YDDN I+IDG+T+++FTE+V+K++E GWHV
Sbjct: 181 IVLYDDNKITIDGNTDLSFTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKSKGK 240
Query: 298 ---IWVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSR 353
I V TTIG+GS +KA + VHG+ LG +++ ++ G P + FHV E+V++ + +
Sbjct: 241 PKLIIVKTTIGYGS-SKAGTEKVHGAPLGDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQ 299
Query: 354 HVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRN 413
HV + W +FA+Y +P+EA + G+LP GWEK LP YT A ATR
Sbjct: 300 HVEKKKENYEAWKKRFAKYTAAFPKEAQAIERRFKGELPPGWEKKLPKYTTNDKAIATRK 359
Query: 414 LSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAIC 473
S+ LN L + LP L+GGSADL SN+T K DF K +PE R +RFGVREH M AI
Sbjct: 360 ASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKASPEGRYIRFGVREHAMCAIM 419
Query: 474 NGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIE 533
NGIA H G IP+ ATF F Y A+R++AL VIYV THDSIGLGEDGPTHQP+E
Sbjct: 420 NGIAAHG-GFIPFGATFLNFYGYALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVE 478
Query: 534 HLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKG 593
LA RA PN+L++RPADG ET+GAY +A+AN K P+IL LSRQ P L G+SI+GV KG
Sbjct: 479 TLALLRATPNLLVIRPADGTETSGAYALALANAKTPTILCLSRQNTPPLPGSSIEGVLKG 538
Query: 594 AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYK 653
AYI+ D + N P +IL+ +GSE+ + +AA+ L K VRVVS WELFD+QS+ Y+
Sbjct: 539 AYIVVDFT--NSPQLILVASGSEVSLCVEAAKALSKELN-VRVVSMPCWELFDQQSEEYQ 595
Query: 654 ESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVIT 713
+SVLP+ +S+EA +FGWEK +GI FGASAPA +YK FG T E V+
Sbjct: 596 QSVLPSGGVPVLSVEAYVSFGWEKYS---HVHVGISGFGASAPANALYKHFGFTVENVVE 652
Query: 714 AAKE 717
A+
Sbjct: 653 KARA 656
|
Length = 661 |
| >gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed | Back alignment and domain information |
|---|
Score = 878 bits (2272), Expect = 0.0
Identities = 343/665 (51%), Positives = 412/665 (61%), Gaps = 107/665 (16%)
Query: 81 TSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFN 140
+ D L++ N IR L++DAV+KANSGHPG+PMG A + ++L+ +R++PKNP W N
Sbjct: 1 SMMDMELLQLLANAIRVLSIDAVQKANSGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPN 60
Query: 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGP 200
RDRFVLSAGHG ML Y+LLHLAGYD + DDLKNFRQ GSKTPGHPE TPG+E TTGP
Sbjct: 61 RDRFVLSAGHGSMLLYSLLHLAGYD-LSIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGP 119
Query: 201 LGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGL 260
LGQG+ANAVG+ALAEK+LAA +N+P +IVDHYTYV+ GDG MEGI++EA SLAGHL L
Sbjct: 120 LGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKL 179
Query: 261 GKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV-------------------- 300
G LI YDDN ISIDG TE FTE+V KRFE GWHVI V
Sbjct: 180 GNLIVIYDDNRISIDGPTEGWFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKASTK 239
Query: 301 ------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRH 354
T IG G+PNK + H
Sbjct: 240 PTLIIAKTIIGKGAPNKEGT---------------------------------------H 260
Query: 355 VAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNL 414
GA L AE E A K GW+ R
Sbjct: 261 KVHGAPLGAE--------------EIAAAKKE------LGWD--------------YRKA 286
Query: 415 SQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICN 474
S LNALAK LP L+GGSADLA SN T +K DF + R + +GVRE M AI N
Sbjct: 287 SGKALNALAKALPELVGGSADLAGSNNTKIKGSKDFAPEDYSGRYIHYGVREFAMAAIAN 346
Query: 475 GIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534
G+ALH G IP+ TF VF+DY R AIR++AL + VIYV THDSIG+GEDGPTHQP+E
Sbjct: 347 GLALHG-GFIPFGGTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQ 405
Query: 535 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS-IDGVEKG 593
LAS RA+PN+ ++RPAD NETA A+K A+ + PS L L+RQ LP L T+ +GV KG
Sbjct: 406 LASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNLPVLERTAQEEGVAKG 465
Query: 594 AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYK 653
Y++ D PDVILI TGSE+ +A +AA+EL G VRVVS S ELFDEQ AYK
Sbjct: 466 GYVLRD-----DPDVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYK 520
Query: 654 ESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVIT 713
ESVLPAAV+ARV++EAG GW K VG GK +GID FGASAPA +++KEFG T E ++
Sbjct: 521 ESVLPAAVTARVAVEAGVADGWYKYVGLDGKVLGIDTFGASAPADELFKEFGFTVENIVA 580
Query: 714 AAKEV 718
AAKE+
Sbjct: 581 AAKEL 585
|
Length = 586 |
| >gnl|CDD|183723 PRK12753, PRK12753, transketolase; Reviewed | Back alignment and domain information |
|---|
Score = 802 bits (2074), Expect = 0.0
Identities = 344/660 (52%), Positives = 428/660 (64%), Gaps = 40/660 (6%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IR L++DAV+KANSGHPG PMG A + +L+ + +++NP NP W++RDRF+LS GH
Sbjct: 9 NAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHAS 68
Query: 153 MLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLA 212
ML Y+LLHL GYD + ++LKNFRQ SKTPGHPE TPG+E TTGPLGQG+ANAVGLA
Sbjct: 69 MLLYSLLHLTGYD-LPIEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLA 127
Query: 213 LAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272
+AE+ LAA++N+P +EIVDHYTYV +GDGC MEGI++E SLAG LGLGKLI FYD N I
Sbjct: 128 IAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGI 187
Query: 273 SIDGDTEIAFTENVDKRFEGLGWHVI-------------------WVT---------TTI 304
SIDG+TE FT++ KRFE WHVI V T I
Sbjct: 188 SIDGETEGWFTDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSVKDKPSLIICRTII 247
Query: 305 GFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAE 364
GFGSPNKA HG+ LG +EV TR+ LGW + PF +P+++ W +G E
Sbjct: 248 GFGSPNKAGKEESHGAPLGEEEVALTRQKLGWHHPPFEIPKEIYAAWD-AREKGEKAEQA 306
Query: 365 WNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPE---SPAE-ATRNLSQTCLN 420
WN KFA Y+K YPE AAEF SG LP WEK Y E +PA+ ATR SQ L
Sbjct: 307 WNEKFAAYKKAYPELAAEFTRRMSGGLPKDWEKKTQKYINELQANPAKIATRKASQNTLE 366
Query: 421 ALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS 480
A LP LLGGSADLA SN+T+ ++D P + +GVRE GM AI NGIA H
Sbjct: 367 AYGPLLPELLGGSADLAPSNLTIWSGSKSLKED-PAGNYIHYGVREFGMTAIANGIAHHG 425
Query: 481 PGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 540
G +PY ATF +F +Y R A R++AL +A I V THDSIGLGEDGPTHQP+E LAS R
Sbjct: 426 -GFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRL 484
Query: 541 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIIS 598
PN RP D E A A+K+A+ P+ L LSRQ L T + + +G YI+
Sbjct: 485 TPNFSTWRPCDQVEAAVAWKLAIERHNGPTALILSRQNLAQQERTPEQVKNIARGGYILK 544
Query: 599 DNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLP 658
D SG KPD+ILI TGSE+EI +AAE+L G+ VRVVS S ++FD Q +AY+ESVLP
Sbjct: 545 D--SGGKPDLILIATGSEVEITLQAAEKLTAEGRNVRVVSMPSTDIFDAQDEAYRESVLP 602
Query: 659 AAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718
+ V+ARV++EAG W K VG KG IG+ FG SAPA K++ FG T E ++ AK++
Sbjct: 603 SNVTARVAVEAGIADYWYKYVGLKGAIIGMTGFGESAPADKLFPFFGFTVENIVAKAKKL 662
|
Length = 663 |
| >gnl|CDD|183724 PRK12754, PRK12754, transketolase; Reviewed | Back alignment and domain information |
|---|
Score = 652 bits (1682), Expect = 0.0
Identities = 323/658 (49%), Positives = 413/658 (62%), Gaps = 40/658 (6%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IR L++DAV+KA SGHPG PMG A + +L+ + + +NP+NP W +RDRFVLS GHG
Sbjct: 9 NAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSNGHGS 68
Query: 153 MLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLA 212
ML Y+LLHL GYD E+ LKNFRQ SKTPGHPE T G+E TTGPLGQG+ANAVG+A
Sbjct: 69 MLIYSLLHLTGYDLPMEE-LKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMA 127
Query: 213 LAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272
+AEK LAA++N+P ++IVDHYTY +GDGC MEGI++E SLAG L LGKLIAFYDDN I
Sbjct: 128 IAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI 187
Query: 273 SIDGDTEIAFTENVDKRFEGLGWHVI----------------------------WVTTTI 304
SIDG E FT++ RFE GWHVI T I
Sbjct: 188 SIDGHVEGWFTDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAVTDKPSLLMCKTII 247
Query: 305 GFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAE 364
GFGSPNKA ++ HG+ LG E+ TR+ LGW Y PF +P ++ W A G E+
Sbjct: 248 GFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEA-GQAKESA 306
Query: 365 WNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPE---SPAE-ATRNLSQTCLN 420
WN KFA Y K YP+EAAEF G++PA ++ + + +PA+ A+R SQ +
Sbjct: 307 WNEKFAAYAKAYPQEAAEFTRRMKGEMPADFDAKAKEFIAKLQANPAKIASRKASQNAIE 366
Query: 421 ALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS 480
A LP LGGSADLA SN+TL +D + +GVRE GM AI NGIALH
Sbjct: 367 AFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNY-IHYGVREFGMTAIANGIALHG 425
Query: 481 PGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 540
G +PY +TF +F +Y R A+R++AL + + V THDSIGLGEDGPTHQP+E +AS R
Sbjct: 426 -GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRV 484
Query: 541 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIIS 598
PN+ RP D E+A A+K V + P+ L LSRQ L T + + +G Y++
Sbjct: 485 TPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVLK 544
Query: 599 DNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLP 658
D +P++I I TGSE+E+A A E+L G RVVS S + FD+Q AY+ESVLP
Sbjct: 545 D--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLP 602
Query: 659 AAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 716
AVSARV++EAG W K VG G +G+ FG SAPA +++EFG T + V+ AK
Sbjct: 603 KAVSARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAK 660
|
Length = 663 |
| >gnl|CDD|144157 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate binding domain | Back alignment and domain information |
|---|
Score = 480 bits (1237), Expect = e-166
Identities = 195/331 (58%), Positives = 234/331 (70%), Gaps = 29/331 (8%)
Query: 90 KSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAG 149
++ N IR LA+DAVEKA SGHPG PMG AP+ +L+ +R+NP +P W NRDRFVLS G
Sbjct: 4 RAANAIRALAMDAVEKAGSGHPGAPMGMAPIAEVLFKRTLRHNPNDPKWPNRDRFVLSNG 63
Query: 150 HGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAV 209
H ML Y+LLHL GYD + +DLK+FRQ GSKTPGHPE T G+EVTTGPLGQG+ANAV
Sbjct: 64 HASMLLYSLLHLTGYD-LSMEDLKSFRQLGSKTPGHPEFGHTAGVEVTTGPLGQGIANAV 122
Query: 210 GLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDD 269
G+A+AE +LAA YN+P +IVDHYTYV LGDGC MEG+++EASSLAGHL LG LIAFYDD
Sbjct: 123 GMAIAEANLAATYNRPGFDIVDHYTYVFLGDGCLMEGVSSEASSLAGHLKLGNLIAFYDD 182
Query: 270 NHISIDGDTEIAFTENVDKRFEGLGWHVIWV----------------------------T 301
N ISIDG+TEI+FTE+ KRFE GWHVI V
Sbjct: 183 NRISIDGETEISFTEDTAKRFEAYGWHVIEVEDGHDVEAIAAAIEEAKAEKDKPTLIICR 242
Query: 302 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATL 361
T IG+GSPNK ++ VHG+ LGA EV A ++ LGW Y+PF +P++V W VAEGA
Sbjct: 243 TVIGYGSPNKQGTHDVHGAPLGADEVAALKEKLGWDYKPFEIPQEVYDAWKEKVAEGAKA 302
Query: 362 EAEWNAKFAEYEKKYPEEAAEFKSISSGQLP 392
EAEWN FA Y+K YPEEAAEF +G+LP
Sbjct: 303 EAEWNELFAAYKKAYPEEAAEFVRRLNGELP 333
|
This family includes transketolase enzymes EC:2.2.1.1. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis. Length = 333 |
| >gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Score = 371 bits (955), Expect = e-125
Identities = 122/267 (45%), Positives = 152/267 (56%), Gaps = 40/267 (14%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IR L++D V+KA SGHPG + A + +LY +V++Y+P +P W NRDRFVLS GH
Sbjct: 1 NRIRRLSIDMVQKAGSGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHAS 60
Query: 153 MLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLA 212
YA+L LAGY E+DLK FRQ GS+ PGHPE TPG+EVTTG LGQG++ AVG+A
Sbjct: 61 PALYAVLALAGYLP--EEDLKTFRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMA 118
Query: 213 LAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272
LAEK L D+ YV+LGDG EG EA+S AGH L LIA D N I
Sbjct: 119 LAEKLL----------GFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRI 168
Query: 273 SIDGDT-EIAFTENVDKRFEGLGWHVIWV---------------------------TTTI 304
IDG T +I FTE++ K+FE GW+VI V T
Sbjct: 169 QIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAKTIK 228
Query: 305 GFGSPNKANSYSVHGSALGAKEVDATR 331
G G P N+ HG LG +EV+ +
Sbjct: 229 GKGVPFMENTAKWHGKPLGEEEVELAK 255
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. Length = 255 |
| >gnl|CDD|132916 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 2e-61
Identities = 66/165 (40%), Positives = 82/165 (49%), Gaps = 10/165 (6%)
Query: 413 NLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAI 472
L LAK P ++ SADL S F K P+ R + G+ E M I
Sbjct: 1 KAFGEALLELAKKDPRIVALSADLGGSTGL-----DKFAKKFPD-RFIDVGIAEQNMVGI 54
Query: 473 CNGIALHSPGLIPYCATFFVFTDYMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQP 531
G+ALH GL P+ +TF F IR AL V +V TH I +GEDGPTHQ
Sbjct: 55 AAGLALH--GLKPFVSTFSFFLQRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQG 112
Query: 532 IEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSR 576
IE +A RA+PN+ +LRPAD NETA A + A P + L R
Sbjct: 113 IEDIALLRAIPNMTVLRPADANETAAALEAA-LEYDGPVYIRLPR 156
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Like many TPP-dependent enzymes DXS and TK are homodimers having a PYR and a PP domain on the same subunit. TK has two active sites per dimer which lie between PYR and PP domains of different subunits. For DXS each active site is located at the interface of a PYR and a PP domain from the same subunit. E1-PDHc is an alpha2beta2 dimer-of-heterodimers having two active sites but having the PYR and PP domains arranged on separate subunits, the PYR domains on the beta subunits, the PP domains on the alpha subunits. DXS is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis, it catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. TK also plays a central role in the Calvin cycle in plants. PDHc catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. This subfamily includes the beta subunits of the E1 component of the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). ADC participates in the breakdown of acetoin. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate during the breakdown of branched chain amino acids. Length = 156 |
| >gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 6e-58
Identities = 73/173 (42%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
Query: 410 ATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGM 469
ATR S L LAK P ++GG AD+A T+ K Q + R + G+ E M
Sbjct: 4 ATRKASGEALAELAKRDPRVVGGGADVAGGTFTVTKGLLHPQ---GDGRVIDTGIAEQAM 60
Query: 470 GAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPT 528
I NG+ALH L P ATF F + AIR +AL + V +V+T D IG+GEDGPT
Sbjct: 61 VGIANGMALHGL-LPPVEATFGDFANRADDAIRHYAALGKLPVPFVVTRDPIGVGEDGPT 119
Query: 529 HQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPH 581
HQ E LA RA+PN+ ++RP+D ET G + A+ P +L L RQ L H
Sbjct: 120 HQSQEDLAFLRAIPNLKVVRPSDAAETKGLLRAAIE-DDGPVVLRLPRQLLRH 171
|
This family includes transketolase enzymes, pyruvate dehydrogenases, and branched chain alpha-keto acid decarboxylases. Length = 172 |
| >gnl|CDD|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 179 bits (455), Expect = 1e-51
Identities = 88/213 (41%), Positives = 117/213 (54%), Gaps = 13/213 (6%)
Query: 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSA 148
E+ IR V + A SGH G + + +LY ++M +P +P W RDRF+LS
Sbjct: 11 ERIAREIRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSK 70
Query: 149 GHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANA 208
GH YA L GY E++L+ FR+ GS+ PGHPE +TPG+EV+TG LGQG++ A
Sbjct: 71 GHAAPALYATLAEKGY--FPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVA 128
Query: 209 VGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYD 268
VG+AL K L + YVILGDG EG EA+ A H L LIA D
Sbjct: 129 VGMALGAK-LKGS---------PYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVD 178
Query: 269 DNHISIDGDTE-IAFTENVDKRFEGLGWHVIWV 300
N + +DG+TE I E + ++E GW VI V
Sbjct: 179 RNKLQLDGETEEIMPKEPLADKWEAFGWEVIEV 211
|
Length = 243 |
| >gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 9e-37
Identities = 45/120 (37%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Query: 462 FGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDS-I 520
G+ E M G+ALH GL P FF F D + IR SA V V HD
Sbjct: 20 TGIAEQAMVGFAAGLALH--GLRPVVEIFFTFFDRAKDQIR-SAGASGNVPVVFRHDGGG 76
Query: 521 GLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLP 580
G+GEDGPTH IE A RA+P + ++ P+D E G + A+ P ++ L R+ L
Sbjct: 77 GVGEDGPTHHSIEDEALLRAIPGLKVVAPSDPAEAKGLLRAAI-RDDGPVVIRLERKSLY 135
|
Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. Length = 136 |
| >gnl|CDD|226467 COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-30
Identities = 95/322 (29%), Positives = 144/322 (44%), Gaps = 47/322 (14%)
Query: 419 LNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIAL 478
L L + ++ ADL+SS T G F K+ P+ R G+ E M G+AL
Sbjct: 17 LAELGRKNSDIVVLDADLSSSTKT-----GYFAKEFPD-RFFNVGIAEQDMVGTAAGLAL 70
Query: 479 HSPGLIPYCATFFVFTDYMRAA---IRISALCEAG--VIYVMTHDSIGLGEDGPTHQPIE 533
G P+ +TF F R A IR S + V V TH + GEDG +HQ +E
Sbjct: 71 A--GKKPFVSTFAAF--LSRRAWEQIRNS-IAYNNLNVKIVATHAGVTYGEDGSSHQALE 125
Query: 534 HLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKG 593
+A R +PN+ ++ PAD ET +A+ K P + L R K+P + E G
Sbjct: 126 DIAIMRGLPNMTVIAPADAVETRAILD-QIADYKGPVYMRLGRGKVPVVVDEGGYTFEIG 184
Query: 594 -AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAY 652
A ++ D S D+ +I TG + A +AAE L+K G + V++ + + DEQ
Sbjct: 185 KANVLRDGS-----DLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQ---- 235
Query: 653 KESVLPAAVSAR--VSIEAGSTFGWEKIVGS------------KGKAIGI-DRFGASAPA 697
++L AA V+ E S G +GS + IG+ D FG S A
Sbjct: 236 --AILKAARETGRIVTAEEHSIIGG---LGSAVAEVLSENGPTPMRRIGVPDTFGRSGKA 290
Query: 698 GKIYKEFGITAEAVITAAKEVC 719
++ +G+ E++ E+
Sbjct: 291 DELLDYYGLDPESIAARVLELL 312
|
Length = 312 |
| >gnl|CDD|217227 pfam02780, Transketolase_C, Transketolase, C-terminal domain | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-09
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 606 PDVILIGTGSELEIAAKAAEELRKGGKAVRVVS--FVS---WELFDE-QSDAYKESVLPA 659
DV ++ GS + A +AAEEL K G + V+ V + E + V+
Sbjct: 10 DDVTIVAYGSMVHEALEAAEELAKEGISAEVIDLRTVKPLDEDTILESVKKTGRLVVVEE 69
Query: 660 AVSARVSIEAG-STFGWEKIVGSKGKAI----GIDRFGASAPAGKIYKEFGITAEAV 711
AV R + + E+ + G D PA G+TAE +
Sbjct: 70 AV-KRGGFGSEVAAALAEEGFDYLDAPVLRVGGPDTPIPHGPAL-ELAYLGLTAEKI 124
|
The C-terminal domain of transketolase has been proposed as a regulatory molecule binding site. Length = 124 |
| >gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (144), Expect = 5e-09
Identities = 70/270 (25%), Positives = 103/270 (38%), Gaps = 57/270 (21%)
Query: 475 GIALHSPGLIPYCA---TFF------VFTDYMRAAIRISALCEAGVIYVMTHDSIGL-GE 524
G+A GL P A TF V D AL V + + D GL G
Sbjct: 339 GLATE--GLKPVVAIYSTFLQRAYDQVIHDV--------ALQNLPVTFAI--DRAGLVGA 386
Query: 525 DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSR-----QKL 579
DGPTHQ L+ R +PN++++ P+D NE A+A P + R +L
Sbjct: 387 DGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYDDGPIAIRYPRGNGVGVEL 446
Query: 580 PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVS- 638
P L I E ++ + DV ++ G+ L A KAAE L + VV
Sbjct: 447 PELEPLPIGKGE----VLREGE-----DVAILAFGTMLAEALKAAERL----ASATVVDA 493
Query: 639 -FVS---WELFDEQSDAYK------ESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGI 688
FV EL E + + E + + V +E + G + V +G+
Sbjct: 494 RFVKPLDEELLLELAAKHDLVVTVEEGAIMGGFGSAV-LEFLADHGLDVPV----LNLGL 548
Query: 689 -DRFGASAPAGKIYKEFGITAEAVITAAKE 717
D F ++ E G+ AE + E
Sbjct: 549 PDEFIDHGSREELLAELGLDAEGIARRILE 578
|
Length = 580 |
| >gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 8e-09
Identities = 51/208 (24%), Positives = 83/208 (39%), Gaps = 22/208 (10%)
Query: 523 GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPH- 581
G DGPTHQ + L+ R +PN++++ P D E A+A P + R
Sbjct: 422 GADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGV 481
Query: 582 LAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVS--F 639
+ ++ +E G + G V ++ G+ L A K AE+L G +V VV F
Sbjct: 482 ILTPELEPLEIGKGEL--LKEG--EKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRF 537
Query: 640 V---SWELFDEQSDAYK------ESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGI-D 689
V L E + ++ E+V+ + V E + G V +G+ D
Sbjct: 538 VKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVL-EFLAAHGILVPV----LNLGLPD 592
Query: 690 RFGASAPAGKIYKEFGITAEAVITAAKE 717
F ++ E G+ AE + E
Sbjct: 593 EFIDHGSPEELLAELGLDAEGIARRILE 620
|
Length = 627 |
| >gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 1e-07
Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 11/180 (6%)
Query: 518 DSIGL-GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSR 576
D G+ G DG THQ ++ R +PN++++ P+D NE P +
Sbjct: 410 DRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHYDDGPIAV---- 465
Query: 577 QKLPHLAGTSIDGVEKGAYIISDNSSGNKP--DVILIGTGSELEIAAKAAEELRKGGKAV 634
+ P ++ + + S + ++++G G+ + A + AE L + G
Sbjct: 466 -RYPRGNAVGVELTPEPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEA 524
Query: 635 RVVS--FVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFG 692
VV FV L +E S +I G+ + + + K + + R G
Sbjct: 525 TVVDARFVK-PLDEELILEIAASHEKLVTVEENAIMGGAGSAVLEFLMDQNKLVPVKRLG 583
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine, Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 617 |
| >gnl|CDD|238975 cd02017, TPP_E1_EcPDC_like, Thiamine pyrophosphate (TPP) family, E1 of E | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 8e-07
Identities = 56/219 (25%), Positives = 81/219 (36%), Gaps = 24/219 (10%)
Query: 95 IRFLAVDAVEKANSGHPGL---PMGCAPMGHI---LYDEVMRYNPKNPYWFNRDRFVLSA 148
IR+ A+ V +AN G+ A + ++ R + D V
Sbjct: 11 IRWNAMAMVHRANKKDLGIGGHIATFASAATLYEVGFNHFFR--ARGEG-GGGDL-VYFQ 66
Query: 149 GHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKT--PGHPENFETPGI-EVTTGPLGQGM 205
GH YA L G + E+ L NFRQ +P + P E T +G G
Sbjct: 67 GHASPGIYARAFLEG--RLTEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGP 124
Query: 206 ANAVGLALAEKHLAAR-YNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLI 264
A+ A ++L R ++ V + LGDG E + A LA L LI
Sbjct: 125 IQAIYQARFNRYLEDRGLKDTSDQKV----WAFLGDGEMDEPESLGAIGLAAREKLDNLI 180
Query: 265 AFYDDNHISIDG---DTEIAFTENVDKRFEGLGWHVIWV 300
+ N +DG E ++ F G GW+VI V
Sbjct: 181 FVVNCNLQRLDGPVRGNGKIIQE-LEGIFRGAGWNVIKV 218
|
coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme. Length = 386 |
| >gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 66/261 (25%), Positives = 100/261 (38%), Gaps = 32/261 (12%)
Query: 477 ALHSPGLIPYCATFFVFTDYMRAAIRIS---ALCEAGVIYVMTHDSIGL-GEDGPTHQPI 532
L + GL P+CA + F R ++ AL V +V+ D GL G DG TH
Sbjct: 379 GLAAAGLKPFCAVYSTFLQ--RGYDQLLHDVALQNLPVRFVL--DRAGLVGADGATHAGA 434
Query: 533 EHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT---SIDG 589
LA +PN+ ++ P D E + A A+ P + R + + +I G
Sbjct: 435 FDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAHDDGPIAVRFPRGEGVGVEIPAEGTILG 494
Query: 590 VEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVS--FVSWEL--- 644
+ KG PDV ++ G+ L AA+ L G +V V FV L
Sbjct: 495 IGKGRVP------REGPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFV-KPLDEA 547
Query: 645 FDEQSDAYKESVLP------AAVSARVSIEAGSTFGWEKIVGSKGKAIGI-DRFGASAPA 697
+ + V+ A V T + G K + +G+ DRF A
Sbjct: 548 LTDLLVRHHIVVIVEEQGAMGGFGAHVLHHLADTGLLDG--GLKLRTLGLPDRFIDHASR 605
Query: 698 GKIYKEFGITAEAVITAAKEV 718
++Y E G+TA + A
Sbjct: 606 EEMYAEAGLTAPDIAAAVTGA 626
|
Length = 641 |
| >gnl|CDD|225329 COG2609, AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 8e-06
Identities = 60/230 (26%), Positives = 87/230 (37%), Gaps = 24/230 (10%)
Query: 84 DAALVEKSVNTIRFLAVDAVEKANS------GHPGLPMGCAPMGHILYDEVMRYNPKNPY 137
D L + + IR+ A V +A+ GH A + + ++ R K+
Sbjct: 74 DLELERRIRSLIRWNAHAMVLRASKKGLELGGHIASFASSATLYEVGFNHFFR--AKSEK 131
Query: 138 WFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQW--GSKTPGHPENFETPG-I 194
D V GH YA L G + E+ L NFRQ G +P P
Sbjct: 132 -DGGDL-VFFQGHASPGIYARAFLEGRLT--EEQLDNFRQEVDGKGLSSYPHPKLMPDFW 187
Query: 195 EVTTGPLGQGMANAVGLALAEKHLAAR-YNKPDNEIVDHYTYVILGDGCQMEGIANEASS 253
+ T +G G A+ A K+L AR ++ V + LGDG E + A +
Sbjct: 188 QFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKV----WAFLGDGEMDEPESRGAIT 243
Query: 254 LAGHLGLGKLIAFYDDNHISIDG---DTEIAFTENVDKRFEGLGWHVIWV 300
A L LI + N +DG E ++ F G GW+VI V
Sbjct: 244 EAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQE-LEGIFRGAGWNVIKV 292
|
Length = 887 |
| >gnl|CDD|226466 COG3957, COG3957, Phosphoketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 18/145 (12%)
Query: 509 AGVIYVMTHDSIGLGEDGPTHQP---IEHLASFRAMPNIL-MLRPADGNETAGAYKVAVA 564
+ Y++T +G +HQ I+H+A+ +I+ + P D N Y +
Sbjct: 522 PSLNYLLTSHVWRQDHNGFSHQDPGFIDHVAN--KKSDIVRVYFPPDANTLLAVYDHCLR 579
Query: 565 NRKRPSILALSRQKLPHLAGTSID----GVEKGAYIISDNSSGN--KPDVILIGTGSE-L 617
+R + +++ S+Q P +++ GA I + +SG+ +PDV++ G
Sbjct: 580 SRNKINVIVASKQ--PRPQWLTMEQAEKHCTDGA-GIWEWASGDDGEPDVVMACAGDVPT 636
Query: 618 EIAAKAAEELRKGGK--AVRVVSFV 640
AA+ LR+ G VRVV+ V
Sbjct: 637 IEVLAAAQILREEGPELRVRVVNVV 661
|
Length = 793 |
| >gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 27/125 (21%), Positives = 38/125 (30%), Gaps = 29/125 (23%)
Query: 191 TPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANE 250
G +G G+ A+G ALA D I GDG M E
Sbjct: 38 RFLTSTGFGAMGYGLPAAIGAALAAP--------------DRPVVCIAGDGGFMMTG-QE 82
Query: 251 ASSLAGHLGLGKLIAFYDDN--HISIDGDTEIAFTE--------NVD--KRFEGLGWHVI 298
++ A GL +I +N + +I E + N D E G +
Sbjct: 83 LAT-AVRYGL-PVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGV 140
Query: 299 WVTTT 303
V
Sbjct: 141 RVEDP 145
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. Length = 168 |
| >gnl|CDD|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 53/196 (27%), Positives = 80/196 (40%), Gaps = 22/196 (11%)
Query: 450 FQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALC 507
F + P R G+ E G+A GL P+CA + F+ Y + + L
Sbjct: 392 FARRFPT-RCFDVGIAEQHAVTFAAGLACE--GLKPFCAIYSSFLQRGYDQVVHDVD-LQ 447
Query: 508 EAGVIYVMTHDSIGL-GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANR 566
+ V + M D GL G DGPTH + +PN++++ P+D E A A
Sbjct: 448 KLPVRFAM--DRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAAAID 505
Query: 567 KRPSILALSR------QKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIA 620
RPS R Q P+ G I+ V KG ++ V L+G G+ ++
Sbjct: 506 DRPSCFRYPRGNGIGVQLPPNNKGIPIE-VGKGRILLEGE------RVALLGYGTAVQSC 558
Query: 621 AKAAEELRKGGKAVRV 636
AA L + G + V
Sbjct: 559 LAAASLLERHGLSATV 574
|
Length = 677 |
| >gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Score = 40.9 bits (95), Expect = 0.002
Identities = 147/679 (21%), Positives = 247/679 (36%), Gaps = 174/679 (25%)
Query: 24 TQSSEHHRLALSTLSLPSF------------SGLKSTSSSTLRTPTSRRR---------- 61
TQ ++ ++ALS + PS+ S + ST S +R T +
Sbjct: 5 TQINKFSQMALSVFAFPSYINRNPSLKYLKPSSMSSTKYSKVRATTFSEKGEYYSNRPPT 64
Query: 62 --LSTSQASLPIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAP 119
L T + ++ +++ L+ +D +R + V K GH G +G
Sbjct: 65 PLLDTINHPMHMKNLSIKELKVLSDE---------LRSDVIFNVSKT-GGHLGSNLGVVE 114
Query: 120 MGHILYDEVMRYNPKNPYWFN--RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQ 177
+ L+ Y FN D+ + GH Y L G + +K RQ
Sbjct: 115 LTVALH-----------YIFNTPHDKILWDVGHQ---SYPHKILTG----RRGKMKTIRQ 156
Query: 178 WGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVI 237
+ G+ + E+ TG ++ +G+A+ D + +++ +
Sbjct: 157 TNGLS-GYTKRRESEHDSFGTGHSSTTLSAGLGMAVGR----------DLKGMNNSVVSV 205
Query: 238 LGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI-----DGDTE------------- 279
+GDG G A EA + AG+L ++ D+ +S+ DG T+
Sbjct: 206 IGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQ 265
Query: 280 ---IAFTENVDKRFEGLGWHVIWVTTTIGFGSPNKANSYSVHGSALGAKEVD------AT 330
E FE LG+H +V G N + S+ + K + T
Sbjct: 266 SNCGMIRETSSTLFEELGFH--YVGPVDGH---NIDDLVSILETLKSTKTIGPVLIHVVT 320
Query: 331 RKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQ 390
K G+PY AE A + K+ K PE +FK+IS Q
Sbjct: 321 EKGRGYPY-----------------AERA------DDKYHGVLKFDPETGKQFKNISKTQ 357
Query: 391 -LPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGD 449
+ + +AL + AEA +++ + +GG T+L +F
Sbjct: 358 SYTSCFVEALI-----AEAEADKDIV---------AIHAAMGGG--------TMLNLF-- 393
Query: 450 FQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAA----IRISA 505
+ P R G+ E G+A GL P+C +++ +M+ A +
Sbjct: 394 -ESRFPT-RCFDVGIAEQHAVTFAAGLACE--GLKPFCT---IYSSFMQRAYDQVVHDVD 446
Query: 506 LCEAGVIYVMTHDSIGL-GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA 564
L + V + + D GL G DGPTH + +PN++++ P+D E A A
Sbjct: 447 LQKLPVRFAI--DRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAA 504
Query: 565 NRKRPSILALSRQKLPHLAGTSIDGVEKG-------AYIISDNSSGNKPDVILIGTGSEL 617
RPS R + G S+ KG I+ D V L+G GS +
Sbjct: 505 IDDRPSCFRYHRG---NGIGVSLPPGNKGVPLQIGRGRILRDGER-----VALLGYGSAV 556
Query: 618 EIAAKAAEELRKGGKAVRV 636
+ +AA L + G + V
Sbjct: 557 QRCLEAASMLSERGLKITV 575
|
Length = 641 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 719 | |||
| COG0021 | 663 | TktA Transketolase [Carbohydrate transport and met | 100.0 | |
| PRK12754 | 663 | transketolase; Reviewed | 100.0 | |
| PRK12753 | 663 | transketolase; Reviewed | 100.0 | |
| PLN02790 | 654 | transketolase | 100.0 | |
| PTZ00089 | 661 | transketolase; Provisional | 100.0 | |
| TIGR00232 | 653 | tktlase_bact transketolase, bacterial and yeast. T | 100.0 | |
| KOG0523 | 632 | consensus Transketolase [Carbohydrate transport an | 100.0 | |
| COG1154 | 627 | Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m | 100.0 | |
| PRK05899 | 624 | transketolase; Reviewed | 100.0 | |
| PLN02225 | 701 | 1-deoxy-D-xylulose-5-phosphate synthase | 100.0 | |
| PLN02582 | 677 | 1-deoxy-D-xylulose-5-phosphate synthase | 100.0 | |
| TIGR00204 | 617 | dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s | 100.0 | |
| PRK12571 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 100.0 | |
| PRK13012 | 896 | 2-oxoacid dehydrogenase subunit E1; Provisional | 100.0 | |
| PLN02234 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase | 100.0 | |
| PRK05444 | 580 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 100.0 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 100.0 | |
| TIGR03186 | 889 | AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S | 100.0 | |
| PRK09405 | 891 | aceE pyruvate dehydrogenase subunit E1; Reviewed | 100.0 | |
| TIGR00759 | 885 | aceE pyruvate dehydrogenase E1 component, homodime | 100.0 | |
| PF00456 | 332 | Transketolase_N: Transketolase, thiamine diphospha | 100.0 | |
| COG3958 | 312 | Transketolase, C-terminal subunit [Carbohydrate tr | 100.0 | |
| PRK05261 | 785 | putative phosphoketolase; Provisional | 100.0 | |
| COG3959 | 243 | Transketolase, N-terminal subunit [Carbohydrate tr | 100.0 | |
| COG2609 | 887 | AceE Pyruvate dehydrogenase complex, dehydrogenase | 100.0 | |
| CHL00144 | 327 | odpB pyruvate dehydrogenase E1 component beta subu | 100.0 | |
| PRK11892 | 464 | pyruvate dehydrogenase subunit beta; Provisional | 100.0 | |
| PRK09212 | 327 | pyruvate dehydrogenase subunit beta; Validated | 100.0 | |
| PLN02683 | 356 | pyruvate dehydrogenase E1 component subunit beta | 100.0 | |
| cd02017 | 386 | TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam | 100.0 | |
| PTZ00182 | 355 | 3-methyl-2-oxobutanate dehydrogenase; Provisional | 100.0 | |
| COG0022 | 324 | AcoB Pyruvate/2-oxoglutarate dehydrogenase complex | 100.0 | |
| PF13292 | 270 | DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn | 100.0 | |
| cd02012 | 255 | TPP_TK Thiamine pyrophosphate (TPP) family, Transk | 100.0 | |
| KOG0524 | 359 | consensus Pyruvate dehydrogenase E1, beta subunit | 100.0 | |
| PRK09404 | 924 | sucA 2-oxoglutarate dehydrogenase E1 component; Re | 100.0 | |
| cd02007 | 195 | TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s | 100.0 | |
| TIGR00239 | 929 | 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon | 100.0 | |
| cd07033 | 156 | TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai | 100.0 | |
| PF02779 | 178 | Transket_pyr: Transketolase, pyrimidine binding do | 100.0 | |
| cd07036 | 167 | TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding | 100.0 | |
| smart00861 | 168 | Transket_pyr Transketolase, pyrimidine binding dom | 99.97 | |
| KOG0525 | 362 | consensus Branched chain alpha-keto acid dehydroge | 99.97 | |
| COG3957 | 793 | Phosphoketolase [Carbohydrate transport and metabo | 99.96 | |
| cd02011 | 227 | TPP_PK Thiamine pyrophosphate (TPP) family, Phosph | 99.87 | |
| COG1071 | 358 | AcoA Pyruvate/2-oxoglutarate dehydrogenase complex | 99.79 | |
| PLN02374 | 433 | pyruvate dehydrogenase (acetyl-transferring) | 99.7 | |
| PF00676 | 300 | E1_dh: Dehydrogenase E1 component; InterPro: IPR00 | 99.7 | |
| CHL00149 | 341 | odpA pyruvate dehydrogenase E1 component alpha sub | 99.68 | |
| cd02000 | 293 | TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) | 99.64 | |
| PLN02269 | 362 | Pyruvate dehydrogenase E1 component subunit alpha | 99.63 | |
| TIGR03182 | 315 | PDH_E1_alph_y pyruvate dehydrogenase E1 component, | 99.62 | |
| PF02780 | 124 | Transketolase_C: Transketolase, C-terminal domain; | 99.61 | |
| TIGR03181 | 341 | PDH_E1_alph_x pyruvate dehydrogenase E1 component, | 99.59 | |
| PF09364 | 379 | XFP_N: XFP N-terminal domain; InterPro: IPR018970 | 99.56 | |
| KOG0225 | 394 | consensus Pyruvate dehydrogenase E1, alpha subunit | 99.56 | |
| cd02016 | 265 | TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami | 99.42 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 99.34 | |
| KOG1182 | 432 | consensus Branched chain alpha-keto acid dehydroge | 99.33 | |
| PRK07119 | 352 | 2-ketoisovalerate ferredoxin reductase; Validated | 99.29 | |
| cd06586 | 154 | TPP_enzyme_PYR Pyrimidine (PYR) binding domain of | 99.18 | |
| PRK08659 | 376 | 2-oxoglutarate ferredoxin oxidoreductase subunit a | 99.17 | |
| cd00568 | 168 | TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa | 99.09 | |
| PRK09627 | 375 | oorA 2-oxoglutarate-acceptor oxidoreductase subuni | 99.07 | |
| PRK09622 | 407 | porA pyruvate flavodoxin oxidoreductase subunit al | 99.03 | |
| PRK12270 | 1228 | kgd alpha-ketoglutarate decarboxylase; Reviewed | 99.01 | |
| cd02004 | 172 | TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam | 98.83 | |
| PRK08366 | 390 | vorA 2-ketoisovalerate ferredoxin oxidoreductase s | 98.73 | |
| TIGR03710 | 562 | OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s | 98.72 | |
| PRK08367 | 394 | porA pyruvate ferredoxin oxidoreductase subunit al | 98.66 | |
| cd02008 | 178 | TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, | 98.65 | |
| cd02002 | 178 | TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC | 98.58 | |
| cd03371 | 188 | TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp | 98.48 | |
| PF03894 | 179 | XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate | 98.44 | |
| cd02015 | 186 | TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet | 98.38 | |
| cd02003 | 205 | TPP_IolD Thiamine pyrophosphate (TPP) family, IolD | 98.36 | |
| cd03372 | 179 | TPP_ComE Thiamine pyrophosphate (TPP) family, ComE | 98.34 | |
| cd02014 | 178 | TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv | 98.31 | |
| cd02005 | 183 | TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, | 98.28 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 98.26 | |
| TIGR03846 | 181 | sulfopy_beta sulfopyruvate decarboxylase, beta sub | 98.24 | |
| TIGR02176 | 1165 | pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid | 98.17 | |
| cd02013 | 196 | TPP_Xsc_like Thiamine pyrophosphate (TPP) family, | 98.17 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 98.16 | |
| KOG0451 | 913 | consensus Predicted 2-oxoglutarate dehydrogenase, | 98.12 | |
| cd02001 | 157 | TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil | 98.11 | |
| PRK11864 | 300 | 2-ketoisovalerate ferredoxin oxidoreductase subuni | 98.1 | |
| cd02010 | 177 | TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto | 98.06 | |
| PF02775 | 153 | TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter | 98.02 | |
| PRK06163 | 202 | hypothetical protein; Provisional | 98.01 | |
| cd02006 | 202 | TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s | 97.98 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 97.9 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 97.8 | |
| cd02009 | 175 | TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa | 97.78 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 97.78 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 97.77 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 97.7 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 97.67 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 97.67 | |
| PRK07586 | 514 | hypothetical protein; Validated | 97.66 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 97.66 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 97.63 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 97.63 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 97.63 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 97.59 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 97.57 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 97.55 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 97.54 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 97.53 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 97.52 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 97.52 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 97.52 | |
| COG0674 | 365 | PorA Pyruvate:ferredoxin oxidoreductase and relate | 97.52 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 97.49 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 97.49 | |
| COG4231 | 640 | Indolepyruvate ferredoxin oxidoreductase, alpha an | 97.49 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 97.48 | |
| PLN02573 | 578 | pyruvate decarboxylase | 97.48 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 97.47 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 97.47 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 97.46 | |
| PLN02470 | 585 | acetolactate synthase | 97.46 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 97.46 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 97.46 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 97.46 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 97.45 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 97.45 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 97.42 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 97.42 | |
| COG3961 | 557 | Pyruvate decarboxylase and related thiamine pyroph | 97.42 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 97.39 | |
| cd03375 | 193 | TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o | 97.38 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 97.38 | |
| TIGR03393 | 539 | indolpyr_decarb indolepyruvate decarboxylase, Erwi | 97.38 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 97.36 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 97.35 | |
| PRK07449 | 568 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 | 97.35 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 97.35 | |
| cd03376 | 235 | TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam | 97.35 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 97.34 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 97.31 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 97.3 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 97.27 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 97.16 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 97.14 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 97.14 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 97.07 | |
| PF01855 | 230 | POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta | 97.02 | |
| cd02018 | 237 | TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru | 97.02 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 97.01 | |
| PRK05778 | 301 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 96.89 | |
| PRK11866 | 279 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 96.83 | |
| PRK09628 | 277 | oorB 2-oxoglutarate-acceptor oxidoreductase subuni | 96.79 | |
| TIGR02177 | 287 | PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta | 96.78 | |
| PRK11867 | 286 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 96.69 | |
| KOG1184 | 561 | consensus Thiamine pyrophosphate-requiring enzyme | 96.55 | |
| cd07035 | 155 | TPP_PYR_POX_like Pyrimidine (PYR) binding domain o | 96.54 | |
| PRK11865 | 299 | pyruvate ferredoxin oxidoreductase subunit beta; P | 96.53 | |
| cd07034 | 160 | TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi | 96.48 | |
| PRK11869 | 280 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 96.27 | |
| PRK13030 | 1159 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 96.23 | |
| PF02776 | 172 | TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter | 96.02 | |
| TIGR03845 | 157 | sulfopyru_alph sulfopyruvate decarboxylase, alpha | 95.95 | |
| PRK09193 | 1165 | indolepyruvate ferredoxin oxidoreductase; Validate | 95.55 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 95.4 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 95.29 | |
| cd07037 | 162 | TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- | 94.66 | |
| PRK13029 | 1186 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 94.63 | |
| cd02018 | 237 | TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru | 93.87 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 93.69 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 93.61 | |
| KOG1185 | 571 | consensus Thiamine pyrophosphate-requiring enzyme | 93.51 | |
| cd07039 | 164 | TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | 93.29 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 93.1 | |
| cd03376 | 235 | TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam | 92.67 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 92.55 | |
| PRK07586 | 514 | hypothetical protein; Validated | 92.12 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 92.03 | |
| TIGR02177 | 287 | PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta | 91.6 | |
| cd02004 | 172 | TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam | 91.42 | |
| cd02010 | 177 | TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto | 91.11 | |
| PRK11864 | 300 | 2-ketoisovalerate ferredoxin oxidoreductase subuni | 90.79 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 90.79 | |
| PRK11866 | 279 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 90.76 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 90.5 | |
| cd02014 | 178 | TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv | 90.39 | |
| cd02001 | 157 | TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil | 90.31 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 90.11 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 90.06 | |
| PF09363 | 203 | XFP_C: XFP C-terminal domain; InterPro: IPR018969 | 89.8 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 89.61 | |
| PRK11865 | 299 | pyruvate ferredoxin oxidoreductase subunit beta; P | 89.55 | |
| cd02008 | 178 | TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, | 89.32 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 89.25 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 89.2 | |
| cd07038 | 162 | TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom | 89.15 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 88.94 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 88.9 | |
| cd02009 | 175 | TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa | 88.88 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 88.88 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 88.84 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 88.77 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 88.76 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 88.48 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 88.4 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 88.16 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 87.83 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 87.41 | |
| PRK07449 | 568 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 | 87.4 | |
| TIGR00173 | 432 | menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex | 87.36 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 87.1 | |
| COG4032 | 172 | Predicted thiamine-pyrophosphate-binding protein [ | 86.88 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 86.82 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 86.49 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 86.13 | |
| PLN02470 | 585 | acetolactate synthase | 86.04 | |
| PRK11867 | 286 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 85.97 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 85.95 | |
| cd02003 | 205 | TPP_IolD Thiamine pyrophosphate (TPP) family, IolD | 85.91 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 85.89 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 85.77 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 85.49 | |
| cd02015 | 186 | TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet | 85.42 | |
| cd03375 | 193 | TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o | 85.42 | |
| PF02775 | 153 | TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter | 85.06 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 84.96 | |
| cd02013 | 196 | TPP_Xsc_like Thiamine pyrophosphate (TPP) family, | 84.88 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 84.81 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 84.8 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 84.63 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 84.24 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 83.93 | |
| cd00568 | 168 | TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa | 83.84 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 83.61 | |
| cd02006 | 202 | TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s | 82.93 | |
| COG1013 | 294 | PorB Pyruvate:ferredoxin oxidoreductase and relate | 82.89 | |
| cd02002 | 178 | TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC | 82.83 | |
| cd02012 | 255 | TPP_TK Thiamine pyrophosphate (TPP) family, Transk | 82.77 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 82.73 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 82.52 | |
| cd02007 | 195 | TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s | 81.85 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 81.84 | |
| COG4231 | 640 | Indolepyruvate ferredoxin oxidoreductase, alpha an | 81.75 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 81.74 | |
| cd03371 | 188 | TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp | 81.31 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 81.18 | |
| PLN02790 | 654 | transketolase | 80.14 |
| >COG0021 TktA Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-134 Score=1111.31 Aligned_cols=632 Identities=59% Similarity=0.969 Sum_probs=601.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCC
Q 005021 85 AALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGY 164 (719)
Q Consensus 85 ~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~ 164 (719)
.+..+++++.||.+++++|.++++||||.+||++||.++||.++|+|||+||+|+||||||||.||++|++|++++|+||
T Consensus 3 ~~~~~~~~naiR~Ls~davqkAnSGHPG~pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLSaGHgSmllYsllhl~Gy 82 (663)
T COG0021 3 MKIDKLLANAIRFLSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSAGHGSMLLYSLLHLTGY 82 (663)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCchhHHHHHHHHHccC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccC
Q 005021 165 DSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 244 (719)
Q Consensus 165 ~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~ 244 (719)
. ++.|||+.|||++|++||||+...+|||+.+||+|||||++|||||||.++++++||+|++++.||++||++||||++
T Consensus 83 ~-ls~edLk~FRQ~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclm 161 (663)
T COG0021 83 D-LSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLM 161 (663)
T ss_pred C-CCHHHHHhhccCCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHh
Confidence 5 799999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE------------------------
Q 005021 245 EGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV------------------------ 300 (719)
Q Consensus 245 eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v------------------------ 300 (719)
||+++||+.+|++++|+|||+|+|+|++|||+.++..+.+++.+||++|||+++.+
T Consensus 162 EGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~~dkPt 241 (663)
T COG0021 162 EGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSFTEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKASTDKPT 241 (663)
T ss_pred cccHHHHHHHHhhcCCCcEEEEEeCCCceeccCcccccchhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCCe
Confidence 99999999999999999999999999999999999989999999999999999966
Q ss_pred ----eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcC
Q 005021 301 ----TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKY 376 (719)
Q Consensus 301 ----~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 376 (719)
+|++|+|.+.++++..+||.|++.++++.++++++|+.++|.+|++++.+|+....+|+..+.+|++++..|++++
T Consensus 242 lI~~kTiIG~Gsp~kegt~~~HGapLg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~~ 321 (663)
T COG0021 242 LIIVKTIIGKGSPNKEGTHKVHGAPLGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKKY 321 (663)
T ss_pred EEEEEeeeecCCCCcCCCccccCCCCCHHHHHHHHHHhCCCCCceecCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999999999998888999999999998666688899999999999999999
Q ss_pred chhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCC
Q 005021 377 PEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPE 456 (719)
Q Consensus 377 p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p 456 (719)
|+.+.++.+.+++++|..|...+|++.......+||++++++|..+++..|+++..+||+.+|+++.+++-.+|..+.|+
T Consensus 322 Pe~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~ 401 (663)
T COG0021 322 PELAAEFERRLNGELPANWAAFLPKFEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYA 401 (663)
T ss_pred hHHHHHHHHHhcccCchhHHHhhhhhcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCC
Confidence 99999999999999999997778887654345899999999999999999999999999999999988887888766899
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia 536 (719)
+|+|.+||+|++|.++++|||++|. ++||..||..|++|++++||+.|+|++||++|.|||++++|+||||||++|+++
T Consensus 402 gr~i~~GVREf~M~AimNGialhGg-~~pyggTFlvFsdY~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa 480 (663)
T COG0021 402 GRYIHFGVREFAMAAIMNGIALHGG-FIPYGGTFLVFSDYARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLA 480 (663)
T ss_pred CCeeEEeeHHHHHHHHHHhHHHhcC-ceeecceehhhHhhhhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHH
Confidence 9999999999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHh
Q 005021 537 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSE 616 (719)
Q Consensus 537 ~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~ 616 (719)
.||+|||+.|++|||++|+..+++.|+.+.++|++|+++|+++|.++.++.+.+.+|+|++.+..+ ..+|++||++|++
T Consensus 481 ~LRaiPN~~V~RPaD~~Et~~aw~~Al~~~~gPt~LiltRQnlp~l~~t~~~~~~kGaYvl~~~~~-~~pd~iliAtGSE 559 (663)
T COG0021 481 SLRAIPNLSVIRPADANETAAAWKYALERKDGPTALILTRQNLPVLERTDLEGVAKGAYVLKDSGG-EDPDVILIATGSE 559 (663)
T ss_pred HhhccCCceeEecCChHHHHHHHHHHHhcCCCCeEEEEecCCCCccCCCccccccCccEEEeecCC-CCCCEEEEecccH
Confidence 999999999999999999999999999877999999999999999987767788999999988521 1489999999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCCCCCC
Q 005021 617 LEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAP 696 (719)
Q Consensus 617 v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~~~g~ 696 (719)
|++|++|++.|+++|+.++||+++|+++||+|...|+++|++.+....|.+|.+...||.+|++.....||+|.|+.||+
T Consensus 560 V~lAv~Aa~~L~~~~~~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~~~W~ky~g~~g~~ig~~~FG~Sap 639 (663)
T COG0021 560 VELAVEAAKELEAEGIKVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGSALGWYKYVGLDGAVIGMDSFGASAP 639 (663)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchHHHHcCCHHHHHhhccCCccceEEEEeccccchhhhcCCCCcEEeeccCcCCCC
Confidence 99999999999988899999999999999999999999999988665699999999999999987778999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Q 005021 697 AGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 697 ~~el~~~~gl~~e~I~~~i~~~l 719 (719)
.++|+++||+|+|+|+++++++|
T Consensus 640 ~~~l~~~fGft~e~vv~~~~~~l 662 (663)
T COG0021 640 GDELFKEFGFTVENVVAKAKSLL 662 (663)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhh
Confidence 99999999999999999999875
|
|
| >PRK12754 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-125 Score=1088.89 Aligned_cols=625 Identities=51% Similarity=0.868 Sum_probs=573.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCC
Q 005021 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ 168 (719)
Q Consensus 89 ~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~ 168 (719)
++++++||+++++|+.++++||+|++||++||+++||..+||+||+||+|++|||||+|+||++|++|+++++.|+. ++
T Consensus 5 ~~~~~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS~GH~~~~lYa~l~~~G~~-~~ 83 (663)
T PRK12754 5 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYD-LP 83 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHhcCCCccCCCCCCCCeEEEeCccHHHHHHHHHHHcCCC-CC
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999982 38
Q ss_pred hhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHH
Q 005021 169 EDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA 248 (719)
Q Consensus 169 ~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~ 248 (719)
.++|++|||++|.++|||++..+||++++||++|||++.|+|||+|.|+++++||++++++.+++|||++||||++||++
T Consensus 84 ~e~L~~fr~~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~ 163 (663)
T PRK12754 84 MEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGIS 163 (663)
T ss_pred HHHHHHhccCCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHH
Confidence 99999999999999999998789999999999999999999999999999999999998888999999999999999999
Q ss_pred HHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEE-E---------------------------
Q 005021 249 NEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIW-V--------------------------- 300 (719)
Q Consensus 249 ~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~-v--------------------------- 300 (719)
|||+++|++++|+|||+|||+|+++||++++....+++.+||++|||++++ |
T Consensus 164 ~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~Pt~I~~ 243 (663)
T PRK12754 164 HEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAVTDKPSLLMC 243 (663)
T ss_pred HHHHHHHHHhCCCCEEEEEEcCCCccCcchhhccCccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999999999999999999999999999999876678999999999999999 6
Q ss_pred eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchhh
Q 005021 301 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEA 380 (719)
Q Consensus 301 ~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~ 380 (719)
+|++|+|.++++++..+|+.++++++++.++++++|+.++|.+|++++.+|+. ..+++....+|++.+++|++.+|+..
T Consensus 244 ~T~~g~G~~~~e~~~~~Hg~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~-~~~~~~~~~~w~~~~~~~~~~~p~~~ 322 (663)
T PRK12754 244 KTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDA-KEAGQAKESAWNEKFAAYAKAYPQEA 322 (663)
T ss_pred EeeeccCccccCCCccccCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH-hhhchHHHHHHHHHHHHHHHHCHHHH
Confidence 79999999988889999999999999999999999988889999999999976 56788888999999999999999988
Q ss_pred hhhhhhhcCCCCCcccccCCCCC----CCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCC
Q 005021 381 AEFKSISSGQLPAGWEKALPTYT----PESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPE 456 (719)
Q Consensus 381 ~~~~~~~~g~~p~~~~~~~~~~~----~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p 456 (719)
.++.+.+++++|.+|...++.|. ...+..+||++++++|.++++.+|+++++++|+.+|+.+.+++.+.|++ +||
T Consensus 323 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~-~~p 401 (663)
T PRK12754 323 AEFTRRMKGEMPADFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINE-DAA 401 (663)
T ss_pred HHHHHHhcCCCchhHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccc-cCC
Confidence 88887777777877765444442 1223578999999999999999999999999999888877777788976 799
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia 536 (719)
+|||++||+||+|+++|+|||++|. ++||+++|++|++|+++|||+.||+++||++|+||+|+++|+||+|||++||++
T Consensus 402 ~r~i~~GIaE~~Mv~iaaGlA~~~G-~~Pf~~tf~~F~~r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEdla 480 (663)
T PRK12754 402 GNYIHYGVREFGMTAIANGIALHGG-FLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVA 480 (663)
T ss_pred CCeEeeccchhhHHHHHhhHHhcCC-CeEEEEeeHHHHHHHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHHHH
Confidence 9999999999999999999999653 899999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCC--ccccccccEEEecCCCCCCCCEEEEEeC
Q 005021 537 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNKPDVILIGTG 614 (719)
Q Consensus 537 ~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~--~~~~~~G~~~i~~~~~~~g~dvtIva~G 614 (719)
+||+||||+|++|+|+.|++.+++.++...++|+|||++|+++|.++... ...+.+|+|.+.+.. +++|++||++|
T Consensus 481 ~lR~iPn~~V~~PaD~~E~~~~~~~a~~~~~gP~yirl~R~~~p~~~~~~~~~~~~~~G~~vl~~~~--~~~dv~iiatG 558 (663)
T PRK12754 481 SLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCA--GQPELIFIATG 558 (663)
T ss_pred HHhcCCCcEEecCCCHHHHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCccchhhhcccCcEEEEecC--CCCCEEEEEEC
Confidence 99999999999999999999999999975589999999999998776421 245778888776531 12599999999
Q ss_pred HhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCCCC
Q 005021 615 SELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGAS 694 (719)
Q Consensus 615 ~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~~~ 694 (719)
+||++|++||+.|+++||+++|||++|++|||++...|++.+++......|++|++...||.++++.....||+|.|+.|
T Consensus 559 s~v~~Al~Aa~~L~~~Gi~~~Vvs~~s~kp~d~q~~~y~~~il~~~~~~~v~iE~~~~~~w~~~~~~~~~~igi~~FG~S 638 (663)
T PRK12754 559 SEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVSARVAVEAGIADYWYKYVGLNGAIVGMTTFGES 638 (663)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCccCcCCCCCHHHHHhcCccccccceEeecccccchhhhccCCCCEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999998775335999999999999998765567999999999
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 695 APAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 695 g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
|+.++|+++||||+|+|+++|+++|
T Consensus 639 g~~~~l~~~~G~t~e~I~~~~~~~~ 663 (663)
T PRK12754 639 APAELLFEEFGFTVDNVVAKAKALL 663 (663)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 9999999999999999999999875
|
|
| >PRK12753 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-124 Score=1084.23 Aligned_cols=625 Identities=54% Similarity=0.897 Sum_probs=567.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCC
Q 005021 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ 168 (719)
Q Consensus 89 ~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~ 168 (719)
+++|++||+++++|+.++++||+|++||++||+++||+.+||+||+||+|++|||||||+||++|++|++++++|+. ++
T Consensus 5 ~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~Ly~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~-~~ 83 (663)
T PRK12753 5 KDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLTGYD-LP 83 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHhCCCccCCCCCCCCcEEEecccHHHHHHHHHHHhCCC-CC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999982 38
Q ss_pred hhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHH
Q 005021 169 EDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA 248 (719)
Q Consensus 169 ~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~ 248 (719)
.++|++|||.+|.++|||+...+|+++++||++|||++.|+|||+|.|+++.+||++++++.+++|||++||||++||++
T Consensus 84 ~e~L~~fr~~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~ 163 (663)
T PRK12753 84 IEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGIS 163 (663)
T ss_pred HHHHHHhccCCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHH
Confidence 99999999999999999998789999999999999999999999999999988999888888999999999999999999
Q ss_pred HHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEE-E---------------------------
Q 005021 249 NEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIW-V--------------------------- 300 (719)
Q Consensus 249 ~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~-v--------------------------- 300 (719)
|||+|+|++++|+|||+|||||+++||++++....+++.++|++|||++++ |
T Consensus 164 ~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~~~~P~~I~~ 243 (663)
T PRK12753 164 HEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSVKDKPSLIIC 243 (663)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhcChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHHCCCCeEEEEE
Confidence 999999999999999999999999999999877788999999999999996 7
Q ss_pred eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchhh
Q 005021 301 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEA 380 (719)
Q Consensus 301 ~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~ 380 (719)
+|+||+|.+.++++..||+.+++++++++++++++|+.++|.+|++++.+|+. ..+|......|.+.++.|++.+|+..
T Consensus 244 ~T~kG~G~~~~e~~~~~H~~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~-~~~~~~~~~~w~~~~~~~~~~~p~~~ 322 (663)
T PRK12753 244 RTIIGFGSPNKAGKEESHGAPLGEEEVALTRQKLGWHHPPFEIPKEIYAAWDA-REKGEKAEQAWNEKFAAYKKAYPELA 322 (663)
T ss_pred EEeecCCCCcccCCCCccCCCCCHHHHHHHHHHhCCCCCCCCCCHHHHHHHHh-hhhchHHHHHHHHHHHHHHHHCHHHH
Confidence 79999999888888999999999999999999999988889999999999974 56677788889999999999899888
Q ss_pred hhhhhhhcCCCCCcccccCCCCC----CCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCC
Q 005021 381 AEFKSISSGQLPAGWEKALPTYT----PESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPE 456 (719)
Q Consensus 381 ~~~~~~~~g~~p~~~~~~~~~~~----~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p 456 (719)
.++.+.+++.+|.+|...+++|. ....+.++|++++++|.++++.+|+++++++|+.+|+.+.+.+.+.|.+ +||
T Consensus 323 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~-~~p 401 (663)
T PRK12753 323 AEFTRRMSGGLPKDWEKKTQKYINELQANPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKE-DPA 401 (663)
T ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhh-cCC
Confidence 77777666666767765444442 1224678999999999999999999999999999888776666678975 899
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia 536 (719)
+||||+|||||+|+++|+|||++|. ++||+++|++|++|++||||+.||+++||++|++|+|+++|+||+|||++||++
T Consensus 402 ~r~i~~GIaEq~mv~~aaGlA~~~G-~~P~~~tf~~F~~r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~iedla 480 (663)
T PRK12753 402 GNYIHYGVREFGMTAIANGIAHHGG-FVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLA 480 (663)
T ss_pred CCEEEeeecHHHHHHHHHHHHHhCC-CeEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHHHH
Confidence 9999999999999999999999542 799999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCC--ccccccccEEEecCCCCCCCCEEEEEeC
Q 005021 537 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNKPDVILIGTG 614 (719)
Q Consensus 537 ~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~--~~~~~~G~~~i~~~~~~~g~dvtIva~G 614 (719)
+||.||||+|++|+|++|++.+++.|+++.++|+|||++|+++|.++... ...+..|+|++++.+ +++|++||++|
T Consensus 481 ~lR~iPn~~v~~PaD~~E~~~~~~~al~~~~gP~~irl~R~~~~~~~~~~~~~~~~~~G~~vl~~~~--~~~dv~iia~G 558 (663)
T PRK12753 481 SLRLTPNFSTWRPCDQVEAAVAWKLAIERHNGPTALILSRQNLAQQERTPEQVKNIARGGYILKDSG--GKPDLILIATG 558 (663)
T ss_pred HHhcCCCCEEEccCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCCCCcccchhhccCCcEEEeccC--CCCCEEEEEeC
Confidence 99999999999999999999999999975689999999999988766432 234778887776531 13699999999
Q ss_pred HhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCCCC
Q 005021 615 SELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGAS 694 (719)
Q Consensus 615 ~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~~~ 694 (719)
+||++|++|+++|+++||+++|||++|++|||++.+.|++.+++......|++|++...+|.++.+.+..++|+|+|+.+
T Consensus 559 s~v~~al~Aa~~L~~~gi~~~Vv~~~~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~~~~~~~~~~~~~~~iGvd~Fg~s 638 (663)
T PRK12753 559 SEVEITLQAAEKLTAEGRNVRVVSMPSTDIFDAQDEAYRESVLPSNVTARVAVEAGIADYWYKYVGLKGAIIGMTGFGES 638 (663)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEECCcCCccchhHHHHHHhhcccccceEEEEccChHHHHHHHcCCCCeEEEeCCCcCc
Confidence 99999999999999999999999999999999999989888876533224999999888898887667788999999999
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 695 APAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 695 g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
|+.++|+++||||+++|+++|++++
T Consensus 639 g~~~~l~~~~Glt~~~Iv~~i~~~~ 663 (663)
T PRK12753 639 APADKLFPFFGFTVENIVAKAKKLL 663 (663)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 9999999999999999999998875
|
|
| >PLN02790 transketolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-122 Score=1073.79 Aligned_cols=624 Identities=87% Similarity=1.396 Sum_probs=565.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCChhHHhh
Q 005021 95 IRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKN 174 (719)
Q Consensus 95 iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~~ 174 (719)
||.++++|+.++++||+|++||++||+++||+++|+|||+||+|++|||||||+||++|++|++|+++|+..++.++|++
T Consensus 1 iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~ 80 (654)
T PLN02790 1 IRFLAIDAVNKANSGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQ 80 (654)
T ss_pred ChHHHHHHHHhcCCCcCCchhhHHHHHHHHHHhhcccCCCCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999984358899999
Q ss_pred hhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHH
Q 005021 175 FRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSL 254 (719)
Q Consensus 175 ~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~ 254 (719)
|||.+|.++|||++.++||++++|||+|||++.|+|||+|.|+++++|++++.++.+++|||++|||+++||++|||+|+
T Consensus 81 ~r~~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~ 160 (654)
T PLN02790 81 FRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASL 160 (654)
T ss_pred hccCCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHH
Confidence 99999999999999899999999999999999999999999998887887766677899999999999999999999999
Q ss_pred hhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE-----------------------------eeeec
Q 005021 255 AGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV-----------------------------TTTIG 305 (719)
Q Consensus 255 A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v-----------------------------~t~~g 305 (719)
|++++|+|||+|||||+|+|+++++....+++.++|++|||++++| +|+||
T Consensus 161 A~~~~L~nli~i~d~N~~~i~~~~~~~~~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~~~~P~lI~~~T~kG 240 (654)
T PLN02790 161 AGHWGLGKLIVLYDDNHISIDGDTEIAFTEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAVTDKPTLIKVTTTIG 240 (654)
T ss_pred HHHhCCCCEEEEEecCCccccCCcccccchhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeEEEEEEEeec
Confidence 9999999999999999999999998777889999999999999987 78999
Q ss_pred CCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchhhhhhhh
Q 005021 306 FGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKS 385 (719)
Q Consensus 306 ~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~ 385 (719)
+|.+.+++...||+.++++++++..+++++|+.+||++++++..+|.....++......|.+++..|...+|+....+.+
T Consensus 241 ~G~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 320 (654)
T PLN02790 241 YGSPNKANSYSVHGAALGEKEVDATRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEWNAKFAEYKKKYPEEAAELKS 320 (654)
T ss_pred CCCccccCCCCcCCCCCCHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 99888888889999999999999999999998889999988888886544456666778999998888778887777777
Q ss_pred hhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccC-CCCCcccccc
Q 005021 386 ISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDT-PEERNVRFGV 464 (719)
Q Consensus 386 ~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~-~p~R~~d~GI 464 (719)
.+++++|.+|...++.|....+..+||++++++|.++++.+|+++++++|+.+|+.+...++.+|++ + ||+||||+||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~-~~~p~Rfi~~GI 399 (654)
T PLN02790 321 LISGELPSGWEKALPTFTPEDPADATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQK-DTPEERNVRFGV 399 (654)
T ss_pred HhccCCchhhhhhhhhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhh-cCCCCCeEEeee
Confidence 7788888888766777754445679999999999999999999999999998887766677788976 6 6999999999
Q ss_pred ccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCe
Q 005021 465 REHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNI 544 (719)
Q Consensus 465 aE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl 544 (719)
|||+|+++|+|||++|.|++||++||++|++|+++|||+.|++++||+|+++|||+++|+||+|||++||+++||+||||
T Consensus 400 aEq~mv~~AaGlA~~G~G~~P~~~tf~~F~~~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iPnl 479 (654)
T PLN02790 400 REHGMGAICNGIALHSSGLIPYCATFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNI 479 (654)
T ss_pred chHHHHHHHHHHHhcCCCcEEEEEecHHHHHHHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCCCc
Confidence 99999999999999752279999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHH
Q 005021 545 LMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAA 624 (719)
Q Consensus 545 ~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa 624 (719)
+|++|+|++|++.++++++.+.++|+|||++|+++|.++.+..+.+.+|+|++.+.+.+.++|++||++|+||++|++||
T Consensus 480 ~V~~PaD~~E~~~~l~~al~~~~gP~~irl~R~~~~~~~~~~~~~~~~G~~vl~~~~~~~~~dv~iia~G~~v~~Al~Aa 559 (654)
T PLN02790 480 LMLRPADGNETAGAYKVAVTNRKRPTVLALSRQKVPNLPGTSIEGVEKGGYVISDNSSGNKPDLILIGTGSELEIAAKAA 559 (654)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCCCEEEEecCCCCCCCCCCcccccccCcEEEEeCCCCCCCCEEEEEcCHHHHHHHHHH
Confidence 99999999999999999997568999999999998876543335688999887664200027999999999999999999
Q ss_pred HHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCCCCCCHHHHHHHh
Q 005021 625 EELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEF 704 (719)
Q Consensus 625 ~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~~~g~~~el~~~~ 704 (719)
++|+++||+++|||++|++|||++.+.|++.+++.....+|++|+++..||+++++.+..++|+|+|+.+|+.++|+++|
T Consensus 560 ~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~~~~~~~~~igvd~Fg~sg~~~~l~~~~ 639 (654)
T PLN02790 560 KELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGSTFGWEKYVGSKGKVIGVDRFGASAPAGILYKEF 639 (654)
T ss_pred HHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccchhHHHhcCCCceEEEeCCCcCcCCHHHHHHHh
Confidence 99999999999999999999999999888888854444579999999999988876666789999999999999999999
Q ss_pred CCCHHHHHHHHHHhC
Q 005021 705 GITAEAVITAAKEVC 719 (719)
Q Consensus 705 gl~~e~I~~~i~~~l 719 (719)
|||+++|+++|+++|
T Consensus 640 Glt~e~I~~~i~~~~ 654 (654)
T PLN02790 640 GFTVENVVAAAKSLL 654 (654)
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999999875
|
|
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-121 Score=1059.55 Aligned_cols=623 Identities=56% Similarity=0.947 Sum_probs=555.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCC
Q 005021 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD 165 (719)
Q Consensus 86 ~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~ 165 (719)
.+.+++|++||.++++|+.++++||+|++||++||+++||+.+|||||+||+|++|||||||+||++|++|++|+++|+.
T Consensus 4 ~~~~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l~l~G~~ 83 (661)
T PTZ00089 4 AIDEKCANEIRCLSADLVQKANSGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSMLHLTGYD 83 (661)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHHHHcCCC
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999982
Q ss_pred CCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccCh
Q 005021 166 SVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME 245 (719)
Q Consensus 166 ~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~e 245 (719)
++.++|++||+.+|.++|||++.++||++++|||+|||++.|+|||+|.|+++.+||+++.+..+++|||++|||+++|
T Consensus 84 -~~~~~l~~fr~~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~e 162 (661)
T PTZ00089 84 -LSMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQE 162 (661)
T ss_pred -CCHHHHHhcCCCCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhh
Confidence 3889999999999999999998889999999999999999999999999999999998877778999999999999999
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE-------------------------
Q 005021 246 GIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV------------------------- 300 (719)
Q Consensus 246 G~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v------------------------- 300 (719)
|++|||+|+|++++|+|||+|||||+|+|+++++....+++.++|++|||+++.|
T Consensus 163 G~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~~~~P~ 242 (661)
T PTZ00089 163 GVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSFTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKSKGKPK 242 (661)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEECCCcccccCcccccCccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCcE
Confidence 9999999999999999999999999999999998767789999999999999987
Q ss_pred ----eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCC-CCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhc
Q 005021 301 ----TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWP-YEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKK 375 (719)
Q Consensus 301 ----~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~-~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 375 (719)
+|+||+|+ .+++...||+.+++.++++.++++++++ ..+|++++++..+|.....++......|+..+..|..+
T Consensus 243 ~I~~~T~kG~G~-~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 321 (661)
T PTZ00089 243 LIIVKTTIGYGS-SKAGTEKVHGAPLGDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQHVEKKKENYEAWKKRFAKYTAA 321 (661)
T ss_pred EEEEEeeecCCC-CcCCCCCccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 68999994 6777889999999999999999999994 44699998888878654444555677899999989888
Q ss_pred CchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC
Q 005021 376 YPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP 455 (719)
Q Consensus 376 ~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~ 455 (719)
+|+...++.+..++++|.+|...+++|....+..+||++++++|.++++.+|+++++++|+.+|+++..++..+|++ +|
T Consensus 322 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~-~~ 400 (661)
T PTZ00089 322 FPKEAQAIERRFKGELPPGWEKKLPKYTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTK-AS 400 (661)
T ss_pred CHHHHHHHHHHhccCCchhhhhhhhhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccc-cC
Confidence 88887777776777777777555666643345688999999999999999999999999998887654444467876 79
Q ss_pred C-CCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 456 E-ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 456 p-~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
| +||||+|||||||+++|+|||++|. ++||+++|++|++|++||||+.||+++||+|+++|+|+++|+||+|||++||
T Consensus 401 P~~rfi~~GIaEq~mv~~AaGlA~~~G-~~P~~~tf~~Fl~Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~ied 479 (661)
T PTZ00089 401 PEGRYIRFGVREHAMCAIMNGIAAHGG-FIPFGATFLNFYGYALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVET 479 (661)
T ss_pred CCCCeeeeeecHHHHHHHHHHHHHcCC-CeEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcccHHH
Confidence 9 8999999999999999999999542 8999999999999999999999999999999999999999999999999999
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTG 614 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G 614 (719)
+++||+||||+|++|+|++|++.++++|+.+.++|+|||++|+++|.++..+...+..|.|.+++.. +++|++||++|
T Consensus 480 ia~lR~iPn~~V~~PaD~~E~~~~l~~al~~~~gP~~irl~R~~~~~~~~~~~~~~~~g~~vl~~~~--~~~dv~iia~G 557 (661)
T PTZ00089 480 LALLRATPNLLVIRPADGTETSGAYALALANAKTPTILCLSRQNTPPLPGSSIEGVLKGAYIVVDFT--NSPQLILVASG 557 (661)
T ss_pred HHHHhcCCCcEEEecCCHHHHHHHHHHHHHcCCCCEEEEecCCCCCCcCCCccccccCceEEEeccC--CCCCEEEEeeC
Confidence 9999999999999999999999999999966789999999999988765432222333456665421 14899999999
Q ss_pred HhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhcc-CCCceEEEEccccccCchhhhcCCceEEeeCcCCC
Q 005021 615 SELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLP-AAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGA 693 (719)
Q Consensus 615 ~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~-~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~~ 693 (719)
++|.+|++|+++|++ ||+++|||++|++|||++.+.|++.|++ ++.. +|++|++...||..+.. .++|++.|+.
T Consensus 558 ~~v~~Al~Aa~~L~~-Gi~~~Vv~~~~ikp~d~~~~~~~~~v~~e~~~~-~vtiE~~~~~g~~~~~~---~~igv~~Fg~ 632 (661)
T PTZ00089 558 SEVSLCVEAAKALSK-ELNVRVVSMPCWELFDQQSEEYQQSVLPSGGVP-VLSVEAYVSFGWEKYSH---VHVGISGFGA 632 (661)
T ss_pred HHHHHHHHHHHHHhc-CCCeEEEeCCCccHHHHHHHHHHHHhcCCCCCc-eEeHHhhHHHHHHhcCC---eEEECCCccc
Confidence 999999999999999 9999999999999999999888878887 4544 59999999999976543 5799966999
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 694 SAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 694 ~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
+|+.++|+++||||+++|+++|++++
T Consensus 633 sg~~~~l~~~~Gl~~e~I~~~i~~~l 658 (661)
T PTZ00089 633 SAPANALYKHFGFTVENVVEKARALA 658 (661)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99999999999999999999998864
|
|
| >TIGR00232 tktlase_bact transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-120 Score=1056.11 Aligned_cols=623 Identities=57% Similarity=0.957 Sum_probs=565.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCCh
Q 005021 90 KSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQE 169 (719)
Q Consensus 90 ~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~ 169 (719)
+.+++||+++++|+.++++||+|++||++||+++||+.+|||||+||+|++|||||+|+||++|++|+++++.|++ ++.
T Consensus 2 ~~~~~iR~~~~~~~~~a~~GH~g~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS~GH~~~~lYa~l~~~G~~-~~~ 80 (653)
T TIGR00232 2 KLANAIRHLAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSNGHGSMLLYSLLHLTGYD-LSI 80 (653)
T ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCeEEEECccHHHHHHHHHHHcCCC-CCH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999984 488
Q ss_pred hHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHH
Q 005021 170 DDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIAN 249 (719)
Q Consensus 170 ~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~ 249 (719)
++|++||+.+|.++|||++..+||++++||++|||++.|+|+|+|.|+++.+||+++++..+++|||++||||++||.+|
T Consensus 81 e~L~~fr~~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~ 160 (653)
T TIGR00232 81 EDLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISY 160 (653)
T ss_pred HHHHhcccCCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHH
Confidence 99999999999999999987899999999999999999999999999999889988877889999999999999999999
Q ss_pred HHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE----------------------------e
Q 005021 250 EASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV----------------------------T 301 (719)
Q Consensus 250 EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v----------------------------~ 301 (719)
||+++|++++|+|||+|||+|+++||++++....+++.++|++|||++++| +
T Consensus 161 EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a~~~~~~P~~I~~~ 240 (653)
T TIGR00232 161 EVASLAGHLKLGKLIVLYDSNRISIDGAVDGSFTEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKASKDKPTLIEVT 240 (653)
T ss_pred HHHHHHHHhCCCcEEEEEeCCCeeeccccccccCccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 999999999999999999999999999997656789999999999999998 7
Q ss_pred eeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHH-hhcchhHHHHHHHHHhhhhhcCchhh
Q 005021 302 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRH-VAEGATLEAEWNAKFAEYEKKYPEEA 380 (719)
Q Consensus 302 t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~p~~~ 380 (719)
|++|+|.+..+++..+|+.++++++++.++++++++.++|.+|++++++|+.. ..+++.....|.+.++.|+..+|+..
T Consensus 241 T~~g~G~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~ 320 (653)
T TIGR00232 241 TTIGFGSPNKAGTHGVHGAPLGDEDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGAKAEQEWNELFAAYKKKYPELA 320 (653)
T ss_pred eeecccCcccCCCCcccCCCCCHHHHHHHHHHhCCCCCCccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHCHHHH
Confidence 89999998888889999999999999999999999877899999999998653 56788888999999999999899888
Q ss_pred hhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCcc
Q 005021 381 AEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNV 460 (719)
Q Consensus 381 ~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~ 460 (719)
.++.+.+++++|..|...+|+|....++.+||++++++|.++++.+|+++++++|+.+|+.+...+...|.+ +||+|||
T Consensus 321 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~-~~p~rfi 399 (653)
T TIGR00232 321 AEFTRRLSGELPADWDKKLPEFKAKLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHE-NPLGNYI 399 (653)
T ss_pred HHHHHHHhccCchhhhhhhhhhhccCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhh-cCCCCeE
Confidence 888777777778777766666642335679999999999999999999999999998887654433334765 8999999
Q ss_pred ccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcC
Q 005021 461 RFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRA 540 (719)
Q Consensus 461 d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~ 540 (719)
|+|||||+|+++|+|||++|. ++||+++|++|++|+++|||+.|++++||+++++|+|+++|+||+|||++||+++||+
T Consensus 400 ~~GIaEq~mv~~AaGlA~~gG-~~p~~~tf~~F~~r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~ 478 (653)
T TIGR00232 400 HYGVREFAMGAIMNGIALHGG-FKPYGGTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRA 478 (653)
T ss_pred eecccHHHHHHHHHHHHHcCC-CeEEEEEhHHHHHHHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhc
Confidence 999999999999999999653 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHH
Q 005021 541 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIA 620 (719)
Q Consensus 541 iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~a 620 (719)
||||+|++|+|++|++.++++++.+.++|+|||++|++.|.++..+...+..|+|.+.... |+||+||++|+||++|
T Consensus 479 iPn~~v~~PaD~~E~~~~~~~a~~~~~gP~~irl~r~~~~~~~~~~~~~~~~G~~vl~~~~---g~dv~iia~G~~v~~a 555 (653)
T TIGR00232 479 IPNLSVWRPCDGNETAAAWKYALESQDGPTALILSRQNLPQLEESSLEKVLKGGYVLKDSK---GPDIILIATGSEVSLA 555 (653)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHhcCCCcEEEEEcCCccCCCCcccccccCCCcEEEEecC---CCCEEEEEeChHHHHH
Confidence 9999999999999999999999965789999999999988765433245788988775432 7899999999999999
Q ss_pred HHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCCCCCCHHHH
Q 005021 621 AKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKI 700 (719)
Q Consensus 621 l~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~~~g~~~el 700 (719)
++|+++|+++||+++|||++|++|||++...|+.++++.... +|++|+++..||..++.....++|+|.|+.+|+.++|
T Consensus 556 l~Aa~~L~~~Gi~~~VI~~~~ikpld~~~~~~~~~~~~~~~~-vvtvEe~~~~g~~~~~~~~~~~igvd~fg~sg~~~~L 634 (653)
T TIGR00232 556 VEAAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVT-RLAVEAGAADEWYKYAGLVGAILGMDSFGESAPGDKL 634 (653)
T ss_pred HHHHHHHHhcCCcEEEEecccCcccccCCHHHHHHHhcccCc-eEEEecccHhHHHHhcCCcceEEEecCCcCCCCHHHH
Confidence 999999999999999999999999999887777778776544 6999999999987655433367999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHhC
Q 005021 701 YKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 701 ~~~~gl~~e~I~~~i~~~l 719 (719)
+++||||+++|+++|++++
T Consensus 635 ~~~~Glt~e~I~~~i~~~~ 653 (653)
T TIGR00232 635 FEEFGFTVENVVAKAKKLL 653 (653)
T ss_pred HHHhCCCHHHHHHHHHHhC
Confidence 9999999999999999875
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. |
| >KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-118 Score=974.17 Aligned_cols=584 Identities=50% Similarity=0.803 Sum_probs=519.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHh
Q 005021 83 TDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLA 162 (719)
Q Consensus 83 ~~~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~ 162 (719)
.++..++.-+++||.+.+++++++++||+++++|++++.+.||..+|||||.+|+|++|||||||+||+||+||++++|+
T Consensus 5 ~~~~~~~~~~n~lri~si~~~~~a~sghp~s~~s~A~~~~vlf~~~mr~~~~~p~~~n~Drfvls~GHa~~llYa~~~l~ 84 (632)
T KOG0523|consen 5 QDSQILKDAVNNLRILSIDATSAAKSGHPGSPLSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLSNGHACPLLYAHWHLA 84 (632)
T ss_pred hhhhhhHHHhhhhhhhhHHHHHhhhcCCCCCccccchhhhhhhhhheecccCCcCCCCCceEEEeccccchHHHHHHHHh
Confidence 34556888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccc
Q 005021 163 GYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGC 242 (719)
Q Consensus 163 G~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~ 242 (719)
|++ ++++|.+|||.+|.++|||++ ++|+++++|||+||||+.|+|||++.|++++ .+++|||++||||
T Consensus 85 G~~--~~edl~~~Rq~~s~t~ghp~~-~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k---------~~~rv~~vlGDG~ 152 (632)
T KOG0523|consen 85 GYD--REEDLKNFRQIGSDTPGHPEP-ELPGVEVATGPLGQGISNAVGMAYAGKHLGK---------ASNRVYCVLGDGC 152 (632)
T ss_pred ccC--cHHHHHHHHhhCCCCCCCCcc-cCCCceeccCCccchHHHHHHHHHHHHhhcc---------ccceEEEEEcCch
Confidence 997 999999999999999999996 8999999999999999999999999999873 3799999999999
Q ss_pred cChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHH-HHhccCceEEEE---------------------
Q 005021 243 QMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDK-RFEGLGWHVIWV--------------------- 300 (719)
Q Consensus 243 ~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~-~~~a~G~~~~~v--------------------- 300 (719)
++||++||||++|++++|+|||+|+|+|+.+||+++.....+++++ ||++|||+++.|
T Consensus 153 ~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~~k~k 232 (632)
T KOG0523|consen 153 LTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKSVKGK 232 (632)
T ss_pred hccchHHHHHhhhhhcccCCEEEEEccccccCCCCCcccccccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhhccCC
Confidence 9999999999999999999999999999999999999888899999 999999999988
Q ss_pred ------eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhh
Q 005021 301 ------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEK 374 (719)
Q Consensus 301 ------~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~ 374 (719)
+|.+|+|....+ ...||+.|+..++++++++.+++|...|.+++++.
T Consensus 233 pt~i~~~t~~g~G~~~ig-~~~~Hg~pl~~~~~~~~k~~~~~P~~~~~v~~~~~-------------------------- 285 (632)
T KOG0523|consen 233 PTAIKATTFIGRGSPYIG-SESVHGAPLGEDDVERVKSIKGLPVLIFVVPEKVK-------------------------- 285 (632)
T ss_pred ceeeeeeeeeecCccccc-cccccCCcchhhHHHHHHhhcCCcceeEEeccccc--------------------------
Confidence 789999998877 88999999999999999998888888888876321
Q ss_pred cCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccC
Q 005021 375 KYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDT 454 (719)
Q Consensus 375 ~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~ 454 (719)
.+|+...+..+.....+|..|+..+|+|+.+++..+||++++++|.++++.+|+++++++|+.+|+++ + |++++
T Consensus 286 ~~p~~~~~~~~~~~~~i~~~~~~~~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~t-----d-~~~~~ 359 (632)
T KOG0523|consen 286 LYPEKPVEDARAISVRIPKIWEKSLPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLT-----D-FFPKR 359 (632)
T ss_pred cCCCcccccccccccCcCccccccCCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchh-----h-hcccc
Confidence 11221112222233456777888889999877779999999999999999999999999999999875 3 44559
Q ss_pred CCCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 455 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 455 ~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
||+|||++|||||||+++|+|+|..|. ++|||.||++|++|++||||..|+.+.+|+++++|+++++|+||||||++||
T Consensus 360 ~p~R~i~~giaEq~mv~ia~G~a~~g~-~~Pf~~tf~~F~trA~dqvr~~a~s~~~v~~v~th~~i~~GeDGPth~~ied 438 (632)
T KOG0523|consen 360 FPERFIECGIAEQNMVGIANGIACRGR-TIPFCGTFAAFFTRAFDQVRMGALSQANVIYVATHDSIGLGEDGPTHQPIED 438 (632)
T ss_pred CccceEEEeeehhhhHHhhhchhcCCC-ccchhHHHHHHHHHhhhheeehhhccCCcEEEEEeccccccCCCcccccHHH
Confidence 999999999999999999999999997 8999999999999999999999999999999999999999999999999999
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTG 614 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G 614 (719)
+++||+|||++|++|+|++|+..++..|+...+.|.+++++|++.+.++..+.+.+.+|+|.+.+. .+||+||+||
T Consensus 439 lA~frsiPn~~v~~PaD~~et~~av~~Aa~~~~~p~i~~~~r~~~~~~~~~~~~~igkg~~vl~~~----~~dV~LiG~G 514 (632)
T KOG0523|consen 439 LAMFRSIPNMIVFRPADGNETENAVATAANTKGTPSIRTLSRQNLPIYNNTEIEEIGKGKYVLQEV----EPDVILIGTG 514 (632)
T ss_pred HHHHHhCCCceEEecCchHHHHHHHHHHHhcCCCeeEEEecCccccccCCCchhhhccccEEEecC----CCCEEEEecc
Confidence 999999999999999999999999999997656699999999999988766556666777765543 3699999999
Q ss_pred HhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcccccc---------CchhhhcCCceE
Q 005021 615 SELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF---------GWEKIVGSKGKA 685 (719)
Q Consensus 615 ~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~---------G~~~~~~~~~~~ 685 (719)
++|++|++||+.|+++||+++|||++||||||..++. +..+.....+.|+|++... +|+.|.+..+..
T Consensus 515 s~v~~cl~AA~~L~~~gi~vrVvd~~~~kplD~~li~---~~~q~~e~ri~v~ed~~~~gsi~~~~~a~~g~~~~~~~~~ 591 (632)
T KOG0523|consen 515 SEVQECLEAAELLSEDGIKVRVVDPFTWKPLDVALIR---SLAQSHEYRISVLEDHVPAGSIEVAVTAAWGKYPGILVPS 591 (632)
T ss_pred HHHHHHHHHHHHHHhcCceEEEecccceeecchHHhh---hhhcccceeEEEccCCCCCcchhheeeehhcccCCcccee
Confidence 9999999999999999999999999999999977663 3333222334666776544 355565545678
Q ss_pred EeeCcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 686 IGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 686 ig~d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
+++|+|+.+|++.+|+++|||+++.|+++++.++
T Consensus 592 ~~~~~~~~sG~p~ell~~fGit~~~Ia~~a~~~~ 625 (632)
T KOG0523|consen 592 LGVDTFGRSGPPPELLKMFGITARHIAAAALSLI 625 (632)
T ss_pred eccccCCcCCCCHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
|
|
| >COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-110 Score=915.16 Aligned_cols=568 Identities=22% Similarity=0.298 Sum_probs=476.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCC
Q 005021 85 AALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGY 164 (719)
Q Consensus 85 ~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~ 164 (719)
.+.|++||.|||..+++.|++ +|||+|++||+|||++|||++ ||+ +.|+||||+|||+ |+||+|||
T Consensus 19 ~~eL~~La~EiR~~li~~vS~-~GGHlgsnLGvVELTiALH~V---F~s------P~D~~IwDVgHQa---YpHKiLTG- 84 (627)
T COG1154 19 IEELPQLADEIREFLLEVVSA-TGGHLGSNLGVVELTIALHYV---FDS------PKDKLIWDVGHQA---YPHKILTG- 84 (627)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-CCCccCCCcChhhhhHHHHHH---hCC------CCCCeEEecCccc---chhHHhcC-
Confidence 345999999999999999998 999999999999999999999 897 8999999999999 99999999
Q ss_pred CCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccC
Q 005021 165 DSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 244 (719)
Q Consensus 165 ~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~ 244 (719)
|.++|.++||.+|++ |||++.||++|.|.+||.+++||.|+|||.|+.++| .+.+|+|+||||+++
T Consensus 85 ---R~e~f~tlRq~~Gls-Gf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g----------~~~~vvaVIGDGAlt 150 (627)
T COG1154 85 ---RREQFDTLRQKDGLS-GFPKREESEHDWFGVGHSSTSISAALGMAKARDLKG----------EDRNVVAVIGDGALT 150 (627)
T ss_pred ---chhhcchhhhcCCCC-CCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcC----------CCCcEEEEECCcccc
Confidence 579999999999999 999999999999999999999999999999999987 378899999999999
Q ss_pred hhHHHHHHHHhh-hcCCCcEEEEEeCCCCCcccchhhhc-------chhHHHHHhccCceEEEEeeeecCCCcccccc--
Q 005021 245 EGIANEASSLAG-HLGLGKLIAFYDDNHISIDGDTEIAF-------TENVDKRFEGLGWHVIWVTTTIGFGSPNKANS-- 314 (719)
Q Consensus 245 eG~~~EAln~A~-~~~L~nli~ivddN~~sis~~~~~~~-------~~~~~~~~~a~G~~~~~v~t~~g~g~~~~~~~-- 314 (719)
.|++|||||+|+ ..+ .|+|+|+|||+|||+.|++... ..+.+++++..+.+++. . .|.+.....
T Consensus 151 ~GmA~EALN~ag~~~~-~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~--~---~~~~~~~~~~r 224 (627)
T COG1154 151 GGMAFEALNNAGADLK-SNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLS--K---VGPPLKRFAKR 224 (627)
T ss_pred chHHHHHHhhhhhccC-CCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHH--h---hchHHHHHHHH
Confidence 999999999999 333 7899999999999999997421 23445555544433332 0 122211100
Q ss_pred --ccccCCCCCHHHHHHHHHHcCC----CCCCCCCcHHHHHHHHHHh-hcchhHHHHHHHHHhhhh--hcCchhhhhhhh
Q 005021 315 --YSVHGSALGAKEVDATRKNLGW----PYEPFHVPEDVKKHWSRHV-AEGATLEAEWNAKFAEYE--KKYPEEAAEFKS 385 (719)
Q Consensus 315 --~~~h~~~l~~~~~~~~~~~l~~----~~~~~~~~~~v~~~~~~~~-~~g~~~~~~~~~~~~~~~--~~~p~~~~~~~~ 385 (719)
..+.+. +.+ ..+++++|+ |.|++++.+ ++..++..+ .+|+.+.|..++|+++|+ +++|+.+|....
T Consensus 225 ~e~~~K~l-~~~---~~lFeelGf~YiGPiDGHni~~-Li~~Lk~~kd~~gPvllHv~T~KGKGY~pAE~d~~~~H~v~~ 299 (627)
T COG1154 225 AEESIKGL-LVP---GTLFEELGFNYIGPIDGHNLEE-LIPTLKNAKDLKGPVLLHVVTKKGKGYKPAEEDPIKYHGVGP 299 (627)
T ss_pred HHHhhhcc-cCc---hhhHHHhCCeeECCcCCCCHHH-HHHHHHHHhcCCCCEEEEEEecCCCCCChhhcChhhccCCCC
Confidence 000111 011 148899998 899999865 778887644 567888888889999885 677777776532
Q ss_pred hh---cCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCcccc
Q 005021 386 IS---SGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRF 462 (719)
Q Consensus 386 ~~---~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~ 462 (719)
.. +|..+ +- .....++.++|+++|.+++++|+++|++||+|..++ ||..|++ +||+||||+
T Consensus 300 f~~~~tg~~~--------~~--~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gt-----GL~~F~~-~fP~R~fDV 363 (627)
T COG1154 300 FDPIETGQSK--------KS--KPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGT-----GLVKFSK-KFPDRFFDV 363 (627)
T ss_pred CCccccCccC--------CC--CCCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCC-----ChHHHHH-hCchhheeh
Confidence 11 11111 00 012345779999999999999999999999997543 4678987 899999999
Q ss_pred ccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHH-HHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhhhhHHcC
Q 005021 463 GVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAA-IRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEHLASFRA 540 (719)
Q Consensus 463 GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dq-ir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~edia~lr~ 540 (719)
||||||+|++|+|||+.| ++|||++|++|+||+||| |||+|+||+||+|++ |++| +|.||+|||+++|+++||+
T Consensus 364 GIAEQHAVT~AAGlA~~G--~kPvvaIYSTFLQRAYDQliHDvaiqnLPV~faI--DRAGivG~DG~TH~G~fDls~l~~ 439 (627)
T COG1154 364 GIAEQHAVTFAAGLAAEG--MKPVVAIYSTFLQRAYDQLIHDVAIQNLPVTFAI--DRAGIVGADGPTHQGLFDLSFLRC 439 (627)
T ss_pred hhhHHHHHHHHHHHHhCC--CCCEEEEecHHHHHHHHHHHHHHHhccCCeEEEE--ecCcccCCCCCccccHHHHHHHhc
Confidence 999999999999999999 799999999999999999 689999999999999 8888 7999999999999999999
Q ss_pred CCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCC-CccccccccEEEecCCCCCCCCEEEEEeCHhHHH
Q 005021 541 MPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT-SIDGVEKGAYIISDNSSGNKPDVILIGTGSELEI 619 (719)
Q Consensus 541 iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~-~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~ 619 (719)
||||+|++|+|++|++.||++|+...++|++|||||++.+..... ..+.+++|+|+++++ |.||+||++|.++..
T Consensus 440 iPnmvi~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~~~~~~~~~~~~~~~~Gk~~i~~~----G~~vail~~G~~~~~ 515 (627)
T COG1154 440 IPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGVILTPELEPLEIGKGELLKE----GEKVAILAFGTMLPE 515 (627)
T ss_pred CCCcEEecCCCHHHHHHHHHHHHhcCCCCeEEEecCCCCCCCCcccccccccccceEEEec----CCcEEEEecchhhHH
Confidence 999999999999999999999998666999999999976554322 246789999999997 799999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcccccc-Cchhhh---------cCCceEEee-
Q 005021 620 AAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKIV---------GSKGKAIGI- 688 (719)
Q Consensus 620 al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~-G~~~~~---------~~~~~~ig~- 688 (719)
|++||+.|.+.||+++|||+|++||||++.+. .+.+++ ..+||+||+... |+|+.+ ..++.++|+
T Consensus 516 al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll~---~La~~h-~~~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~lglp 591 (627)
T COG1154 516 ALKVAEKLNAYGISVTVVDPRFVKPLDEALLL---ELAKSH-DLVVTLEENVVDGGFGSAVLEFLAAHGILVPVLNLGLP 591 (627)
T ss_pred HHHHHHHHHhcCCCcEEEcCeecCCCCHHHHH---HHHhhc-CeEEEEecCcccccHHHHHHHHHHhcCCCCceEEecCC
Confidence 99999999999999999999999999998764 445555 457999999964 566532 146778999
Q ss_pred CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 689 DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 689 d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
|.|++||+++++++.+|||++.|+++|.+++
T Consensus 592 d~fi~hg~~~el~~~~gLd~~~i~~~i~~~l 622 (627)
T COG1154 592 DEFIDHGSPEELLAELGLDAEGIARRILEWL 622 (627)
T ss_pred hHhhccCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999998764
|
|
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-106 Score=936.00 Aligned_cols=595 Identities=60% Similarity=0.955 Sum_probs=517.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL 161 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l 161 (719)
|-+.+.|+++|++||+++++|+.++++||+|++||++||+++||+.+|+|||+||+|++|||||||+||++|++|+++++
T Consensus 2 ~~~~~~l~~~a~~iR~~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s~GH~~~~~Ya~l~~ 81 (624)
T PRK05899 2 MMDMELLQLLANAIRVLSIDAVQKANSGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPNRDRFVLSAGHGSMLLYSLLHL 81 (624)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEChhHHHHHHHHHHH
Confidence 34455699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCC-CCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcc
Q 005021 162 AGY-DSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGD 240 (719)
Q Consensus 162 ~G~-~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGD 240 (719)
+|+ + +.++|.+||++++.++|||++.++|++++++|++|+|++.|+|+|+|.++++.+|+++..+..+++|||++||
T Consensus 82 ~G~~~--~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GD 159 (624)
T PRK05899 82 AGYDL--SIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGD 159 (624)
T ss_pred cCCCC--CHHHHHHhcCCCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECc
Confidence 998 6 8999999999999988999987899999999999999999999999999998878777666678999999999
Q ss_pred cccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE--------------------
Q 005021 241 GCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV-------------------- 300 (719)
Q Consensus 241 G~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v-------------------- 300 (719)
|++++|++|||++.|+.++|+|+++|+|||++++++++......++.+++++|||++++|
T Consensus 160 G~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~~~~ 239 (624)
T PRK05899 160 GDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGWFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKASTK 239 (624)
T ss_pred chhhchHHHHHHHHHHHhCCCCEEEEEECCCCcccccccccccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999887555678999999999999998
Q ss_pred ------eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhh
Q 005021 301 ------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEK 374 (719)
Q Consensus 301 ------~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~ 374 (719)
+|.||+|.+..++...||+.++++++++..++++++..+++.++.++..+|+....++.....
T Consensus 240 P~vI~v~t~kg~g~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 308 (624)
T PRK05899 240 PTLIIAKTIIGKGAPNKEGTHKVHGAPLGAEEIAAAKKELGWDYEPFEVPEEVYAHWRKAKERGAKAEA----------- 308 (624)
T ss_pred CEEEEEEeEeccCCccccCCCcccCCCCCHHHHHHHHHHcCCCcccccCChHHHHHHHHhhhcCchhHH-----------
Confidence 789999998888777899998888899988888876556777776666666432222211110
Q ss_pred cCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccC
Q 005021 375 KYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDT 454 (719)
Q Consensus 375 ~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~ 454 (719)
.|..... ....++|++++++|.+++++||+++++++|+.++++....+...|.+++
T Consensus 309 -------------------~~~~~~~-----~~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~~~~~~~~~~f~~~~ 364 (624)
T PRK05899 309 -------------------EWNEKFA-----GEKVATRKASGKALNALAKALPELVGGSADLAGSNNTKIKGSKDFAPED 364 (624)
T ss_pred -------------------HHHHhhc-----ccchHHHHHHHHHHHHHHhhCCCEEEEeCCCccccCcccccccccCccC
Confidence 1111110 1346889999999999999999999999999776654322223453347
Q ss_pred CCCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 455 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 455 ~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
||+||||+|||||+|+++|+|||+.|. ++||+++|++|++|+++|||..|++++||+++++++|+++|+||+|||++||
T Consensus 365 ~p~R~~d~GIaE~~~vg~A~GlA~~G~-~~pv~~t~~~F~~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tHq~~ed 443 (624)
T PRK05899 365 YSGRYIHYGVREFAMAAIANGLALHGG-FIPFGGTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQ 443 (624)
T ss_pred CCCCeeeeChhHHHHHHHHHHHHHcCC-CeEEEEEcHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCcccHHH
Confidence 999999999999999999999999993 5999999999999999999999999999999999999989999999999999
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCC-CccccccccEEEecCCCCCCCCEEEEEe
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT-SIDGVEKGAYIISDNSSGNKPDVILIGT 613 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~-~~~~~~~G~~~i~~~~~~~g~dvtIva~ 613 (719)
+++||+||||+|++|+|++|++.+++++++..++|+|||++|+..+.++.+ ....++.|++++ ++ |+|+|||++
T Consensus 444 ia~~r~iP~~~V~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~G~~~l-~~----G~dvtiia~ 518 (624)
T PRK05899 444 LASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNLPVLERTAQEEGVAKGGYVL-RD----DPDVILIAT 518 (624)
T ss_pred HHHHHhCCCcEEEeCCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCCcCCccccccccCCcEEE-ec----CCCEEEEEe
Confidence 999999999999999999999999999997448999999999988766543 235688898665 44 689999999
Q ss_pred CHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCCC
Q 005021 614 GSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGA 693 (719)
Q Consensus 614 G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~~ 693 (719)
|+||++|++|+++|+++||+++|||++|++|||++...+....+.+....+|++|++...||..++..+..++|++.|+.
T Consensus 519 G~~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~~g~~~~~~~~~~~iGv~~f~~ 598 (624)
T PRK05899 519 GSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVADGWYKYVGLDGKVLGIDTFGA 598 (624)
T ss_pred CHHHHHHHHHHHHHHhcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCccchhhhcCCCceEEECCCCCC
Confidence 99999999999999999999999999999999998655555566444434688898888889888776778999955999
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 694 SAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 694 ~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
+|++++|+++||||+++|+++|++++
T Consensus 599 ~g~~~~l~~~~gl~~~~I~~~i~~~~ 624 (624)
T PRK05899 599 SAPADELFKEFGFTVENIVAAAKELL 624 (624)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 99999999999999999999999875
|
|
| >PLN02225 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-104 Score=900.56 Aligned_cols=560 Identities=18% Similarity=0.178 Sum_probs=452.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhC
Q 005021 85 AALVEKSVNTIRFLAVDAV-EKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAG 163 (719)
Q Consensus 85 ~~~l~~la~~iR~~~~~~v-~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G 163 (719)
.+.|++||+|||.++++.+ ++ ++||+|+|||+|||++|||++ ||+ |+|++|||+|||+ |+||+|||
T Consensus 93 ~~eL~~La~EiR~~li~~v~s~-~GGHl~snLGvVELTvALH~V---Fd~------p~DkiiwDvgHQ~---Y~HKiLTG 159 (701)
T PLN02225 93 VKELKLLADEIRTELHSVLWKK-TQKSMNPSFAAIELTLALHYV---FRA------PVDNILWDAVEQT---YAHKVLTR 159 (701)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc-cCCCcCCCccHHHHHHHHHHH---hCC------CCCceeecccccc---chhhHhcC
Confidence 3559999999999999999 66 899999999999999999999 997 9999999999999 99999999
Q ss_pred CCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc
Q 005021 164 YDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ 243 (719)
Q Consensus 164 ~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~ 243 (719)
|++.|.+ ||.+|++ |||++.|+++|.|.+||.+++||.|+|||.|+++++ .+++||++||||+|
T Consensus 160 ----R~~~f~~-Rq~~Gls-Gf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g----------~~~~vvaVIGDGal 223 (701)
T PLN02225 160 ----RWSAIPS-RQKNGIS-GVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKG----------KRDRVVAVIDNATI 223 (701)
T ss_pred ----ChhhcCc-cccCCcC-CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcC----------CCCcEEEEEcCcch
Confidence 5788987 9999999 999999999999999999999999999999999987 37889999999999
Q ss_pred ChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc--------hhhh-------cchhHHHHHhccCceEEEEeeeecCCC
Q 005021 244 MEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD--------TEIA-------FTENVDKRFEGLGWHVIWVTTTIGFGS 308 (719)
Q Consensus 244 ~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~--------~~~~-------~~~~~~~~~~a~G~~~~~v~t~~g~g~ 308 (719)
+.|++|||||+|+..+ .|||||+|||+|||+.+ ++.. ...+.+.+++......++ ..+.+.
T Consensus 224 tgGma~EaLN~~g~~~-~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~---~~~~~~ 299 (701)
T PLN02225 224 TAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTK---RIGKGM 299 (701)
T ss_pred hhhhHHHHHhhhhccC-CCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHH---hCCHHH
Confidence 9999999999999987 68999999999999999 6531 122344444433222221 001000
Q ss_pred ccc-c-ccccccCCCCCHHHHHHHHHHcCC----CCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchhhhh
Q 005021 309 PNK-A-NSYSVHGSALGAKEVDATRKNLGW----PYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAE 382 (719)
Q Consensus 309 ~~~-~-~~~~~h~~~l~~~~~~~~~~~l~~----~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~ 382 (719)
... . ......+. +.+. -..++++||+ |.|+++++. ++..|+..+ .+..+.|...|.
T Consensus 300 ~~~~~~~~~~~k~~-~~~~-~~~lFe~lG~~Y~GpvDGHdi~~-Li~~l~~~k---------------~~~~~~PvlvHv 361 (701)
T PLN02225 300 YEWAAKVDEYARGM-VGPT-GSTLFEELGLYYIGPVDGHNIED-LVCVLREVS---------------SLDSMGPVLVHV 361 (701)
T ss_pred HHHHHHHHHHhhhc-cCCC-ccCcHHHcCCeEECccCCCCHHH-HHHHHHHHH---------------cCCCCCCEEEEE
Confidence 000 0 00000000 0000 0147888987 889998865 666665432 122234666666
Q ss_pred hhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCcccc
Q 005021 383 FKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRF 462 (719)
Q Consensus 383 ~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~ 462 (719)
.+. +|+.++.- +........+++++|+++|.+++++||+|+++++||..++ ++..|++ +||+||||+
T Consensus 362 ~T~--KGkd~~tg-----~~~~~~~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gt-----gl~~f~~-~fPdRffDv 428 (701)
T PLN02225 362 ITE--ENRDAETG-----KNIMVKDRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDA-----SLITFQE-RFPDRFFNV 428 (701)
T ss_pred Eec--CCCCCCCC-----CcCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcc-----cHHHHHH-Hcccccccc
Confidence 553 33322210 0111112467999999999999999999999999997543 2466876 899999999
Q ss_pred ccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHH-HhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCC
Q 005021 463 GVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAM 541 (719)
Q Consensus 463 GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~-~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~i 541 (719)
||||||||++|+|||+.| ++|||++|++|++|+||||+. +|++++||+|++.+.|+ +|+||+|||++||+++||+|
T Consensus 429 GIAEQhaVt~AAGLA~~G--~kPvv~iystFlqRAyDQI~~Dval~~lpV~~vid~aGl-vg~DG~TH~g~~Dia~lr~I 505 (701)
T PLN02225 429 GMAEQHAVTFSAGLSSGG--LKPFCIIPSAFLQRAYDQVVHDVDRQRKAVRFVITSAGL-VGSDGPVQCGAFDIAFMSSL 505 (701)
T ss_pred CccHHHHHHHHHHHHHCC--CEEEEEeehhHHHHHHHHHHHHHHhhcCCceEEEECCcc-CCCCCccccccHHHHHHhcC
Confidence 999999999999999999 699999999999999999876 69999999999966554 57899999999999999999
Q ss_pred CCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCC--CCCccccccccEEEecCCCCCCCCEEEEEeCHhHHH
Q 005021 542 PNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA--GTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEI 619 (719)
Q Consensus 542 Pnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~--~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~ 619 (719)
|||+|++|+|+.|++.||++|+...++|+|||+||+..+..+ .+..+.+++|+++++++ |.|++||++|.|+++
T Consensus 506 Pnm~V~aPsD~~El~~mL~~A~~~~~gPv~IR~pRg~~~~~~~~~~~~~~~~iGK~~vlre----G~dvtIia~G~mv~~ 581 (701)
T PLN02225 506 PNMIAMAPADEDELVNMVATAAYVTDRPVCFRFPRGSIVNMNYLVPTGLPIEIGRGRVLVE----GQDVALLGYGAMVQN 581 (701)
T ss_pred CCCEEEeeCCHHHHHHHHHHHHhcCCCCEEEEecccccCCCCcCCCCCccccCcceEEEEe----CCCEEEEeccHHHHH
Confidence 999999999999999999998854579999999998765432 11125688999988887 799999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhh------------cCCceEEe
Q 005021 620 AAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIV------------GSKGKAIG 687 (719)
Q Consensus 620 al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~------------~~~~~~ig 687 (719)
|++||++|+++||+++|||++|++|||++++. +.+.+++ .+||+||+...|+|+.+ ..++.++|
T Consensus 582 Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~--~~~~k~~--~vVTvEE~~~GG~Gs~Va~~l~~~~~~~~~~~v~~iG 657 (701)
T PLN02225 582 CLHAHSLLSKLGLNVTVADARFCKPLDIKLVR--DLCQNHK--FLITVEEGCVGGFGSHVAQFIALDGQLDGNIKWRPIV 657 (701)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCCHHHHH--HHHhhcC--eEEEEcCCCCCchHHHHHHHHHhcCCCcCCCcEEEEe
Confidence 99999999999999999999999999999875 3444443 47999999987776532 12467899
Q ss_pred e-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 688 I-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 688 ~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
+ |+|+++|++++|++++|||+++|+++|++++
T Consensus 658 ipd~F~~~G~~~~ll~~~GLdae~I~~~i~~~l 690 (701)
T PLN02225 658 LPDGYIEEASPREQLALAGLTGHHIAATALSLL 690 (701)
T ss_pred cCCcCcCCCCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 9 8999999999999999999999999998764
|
|
| >PLN02582 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-100 Score=879.36 Aligned_cols=570 Identities=19% Similarity=0.231 Sum_probs=456.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhC
Q 005021 84 DAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAG 163 (719)
Q Consensus 84 ~~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G 163 (719)
+.+.|+++|++||+.+++|+.+ .+||+|++||++||+++||++ ||. ++||||||+|||+ |+|++++|
T Consensus 47 ~~~~l~~la~~iR~~ii~~~~~-~~GH~g~~Ls~vel~~aL~~~---~~~------p~Dr~i~s~GH~a---y~~~~l~g 113 (677)
T PLN02582 47 SVKELKQLADELRSDVIFNVSK-TGGHLGSSLGVVELTVALHYV---FNA------PQDKILWDVGHQS---YPHKILTG 113 (677)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh-cCCCcCccccHHHHHHHHHHh---hCC------CCCeEEEECcchH---HHHHHHHc
Confidence 4455999999999999999997 589999999999999999975 553 5799999999999 99999999
Q ss_pred CCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc
Q 005021 164 YDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ 243 (719)
Q Consensus 164 ~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~ 243 (719)
+ .++|++|||.+| +.|||++.++||+++++||+|+||+.|+|+|+|.++++ .+++|||++|||++
T Consensus 114 r----~~~l~~~r~~g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~----------~~~~v~~viGDG~~ 178 (677)
T PLN02582 114 R----RDKMHTMRQTNG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKG----------KKNNVVAVIGDGAM 178 (677)
T ss_pred c----HHHhcccccCCC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcC----------CCCEEEEEeccccc
Confidence 4 688999999999 55999999999999999999999999999999999876 37899999999999
Q ss_pred ChhHHHHHHHHhhhcCCCcEEEEEeCCCC-Cc--------ccchhhh-------cchhHHHHHhccCceEEEEeeeecCC
Q 005021 244 MEGIANEASSLAGHLGLGKLIAFYDDNHI-SI--------DGDTEIA-------FTENVDKRFEGLGWHVIWVTTTIGFG 307 (719)
Q Consensus 244 ~eG~~~EAln~A~~~~L~nli~ivddN~~-si--------s~~~~~~-------~~~~~~~~~~a~G~~~~~v~t~~g~g 307 (719)
++|++|||+|+|+++++ ||++|+|||+| || +.+++.. .....+.+++.-....+. ++ . +
T Consensus 179 ~~G~~~Ealn~a~~~~~-~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~--~-~ 253 (677)
T PLN02582 179 TAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTK-QI--G-G 253 (677)
T ss_pred chhhHHHHHHHHHhhCc-CEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHH-hC--c-H
Confidence 99999999999999996 79999999999 44 5555432 111223333322221111 00 0 0
Q ss_pred CccccccccccCCCCCHHHHH--------HHHHHcCC----CCCCCCCcHHHHHHHHHHhh---cchhHHHHHHHHHhhh
Q 005021 308 SPNKANSYSVHGSALGAKEVD--------ATRKNLGW----PYEPFHVPEDVKKHWSRHVA---EGATLEAEWNAKFAEY 372 (719)
Q Consensus 308 ~~~~~~~~~~h~~~l~~~~~~--------~~~~~l~~----~~~~~~~~~~v~~~~~~~~~---~g~~~~~~~~~~~~~~ 372 (719)
. .+ ...+. + .+.++ .++++||| |.|++++.+ +++.|+..+. +++.+.+..+.|+++|
T Consensus 254 ~--~~--~~~~~--~-~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~-L~~al~~~k~~~~~~P~vihv~T~KGkG~ 325 (677)
T PLN02582 254 P--MH--ELAAK--V-DEYARGMISGSGSTLFEELGLYYIGPVDGHNIDD-LVTILREVKSTKTTGPVLIHVVTEKGRGY 325 (677)
T ss_pred h--HH--HHHHH--H-HHHhhhccCccccchHHHcCCeEEeeeCCCCHHH-HHHHHHHHHhcCCCCCEEEEEEecCCCCC
Confidence 0 00 00000 0 00011 36788888 788998865 7788876543 3677777788888887
Q ss_pred h--hcCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccC
Q 005021 373 E--KKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDF 450 (719)
Q Consensus 373 ~--~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f 450 (719)
. +++|+.+|... |.+.....+. .......++.++|+++|.+++++||+|+++++|+++++. +..|
T Consensus 326 ~~ae~~~~~~H~~~-------~f~~~~g~~~-~~~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~g-----l~~f 392 (677)
T PLN02582 326 PYAERAADKYHGVV-------KFDPATGKQF-KVKAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG-----LNLF 392 (677)
T ss_pred ChhhcChhhcCCCC-------CCCcccCCcc-CCCCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCCCccc-----hHHH
Confidence 5 56666666432 1111000000 000112467889999999999999999999999876543 3568
Q ss_pred cccCCCCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHH-HHhhhcCCEEEEEecCCCccCCCCCCC
Q 005021 451 QKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIR-ISALCEAGVIYVMTHDSIGLGEDGPTH 529 (719)
Q Consensus 451 ~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir-~~a~~~~pV~~v~~~~g~g~g~dG~TH 529 (719)
++ +||+||||+|||||+||++|+|||+.| ++||+++|++|++|+||||+ ++|++++||+|+++++|+ +|+||+||
T Consensus 393 ~~-~fP~R~fdvGIAEq~~vg~AaGLA~~G--~kPvv~~fs~Fl~RA~DQI~~dval~~lpVv~v~~~aG~-vg~dG~TH 468 (677)
T PLN02582 393 AR-RFPTRCFDVGIAEQHAVTFAAGLACEG--LKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTH 468 (677)
T ss_pred HH-HcCccccccCcCHHHHHHHHHHHHHCC--CeEEEEecHHHHHHHHHHHHHHHHhcCCCEEEEEECCCc-ccCCCCcc
Confidence 76 899999999999999999999999999 69999999999999999975 569999999999977766 67899999
Q ss_pred CChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCC--CC-CccccccccEEEecCCCCCCC
Q 005021 530 QPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA--GT-SIDGVEKGAYIISDNSSGNKP 606 (719)
Q Consensus 530 q~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~--~~-~~~~~~~G~~~i~~~~~~~g~ 606 (719)
|+++|+++||+|||++|++|+|+.|++.+|++|+...++|+|||++|+..+... .. ..+.+++|++.++++ |.
T Consensus 469 ~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~al~~~~gPv~IR~pr~~~~~~~~~~~~~~~~~~iGk~~vlr~----G~ 544 (677)
T PLN02582 469 CGAFDVTYMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVQLPPNNKGIPIEVGKGRILLE----GE 544 (677)
T ss_pred cccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCCEEEEEecCCCCCcccCCcccccccccCceEEEEe----CC
Confidence 999999999999999999999999999999999964469999999998754322 11 123578899888887 78
Q ss_pred CEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhh----c--
Q 005021 607 DVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIV----G-- 680 (719)
Q Consensus 607 dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~----~-- 680 (719)
|++||++|+||++|++||+.|+++||+++|||++|++|||++.+. ++.+++. .+||+|++...||++.+ .
T Consensus 545 dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VId~~~lkPlD~~~i~---~~~k~~~-~vVtvEe~~~GG~Gs~va~~l~~~ 620 (677)
T PLN02582 545 RVALLGYGTAVQSCLAAASLLERHGLSATVADARFCKPLDRALIR---SLAKSHE-VLITVEEGSIGGFGSHVAQFMALD 620 (677)
T ss_pred CEEEEeecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCHHHHH---HHhhhCC-EEEEECCCCCCcHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998763 5666664 46999999998887632 1
Q ss_pred ------CCceEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 681 ------SKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 681 ------~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
.++.++|+ |+|+++|++++|+++||||+++|+++|++++
T Consensus 621 ~~~~~~~~v~~~Gi~d~F~~~G~~~~L~~~~GL~~e~I~~~i~~~l 666 (677)
T PLN02582 621 GLLDGKLKWRPLVLPDRYIDHGAPADQLAEAGLTPSHIAATVLNVL 666 (677)
T ss_pred CCccCCceeEEecCCCcccCcCCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 24568899 8999999999999999999999999998764
|
|
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-99 Score=873.58 Aligned_cols=545 Identities=20% Similarity=0.289 Sum_probs=441.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL 161 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l 161 (719)
++.. .|+++|++||+++++++++ ++||+|++||+|||+++||++ ||+ +|||||||+|||+ |+||++
T Consensus 13 l~~~-~l~~la~~iR~~~i~~~~~-~~GH~g~~ls~vel~~aL~~~---~~~------~rDr~i~s~GH~~---Y~~~~~ 78 (617)
T TIGR00204 13 LSID-ELEKLCDELRRYLLESVSA-SGGHLASGLGTVELTVALHYV---FNT------PKDQFIWDVGHQA---YPHKLL 78 (617)
T ss_pred CCHH-HHHHHHHHHHHHHHHHHhc-cCCCcCcchhHHHHHHHHHhh---CCC------CCCcEEEecchHH---HHHHHH
Confidence 5444 4999999999999999985 999999999999999999986 676 8999999999999 999999
Q ss_pred hCCCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccc
Q 005021 162 AGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG 241 (719)
Q Consensus 162 ~G~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG 241 (719)
+|+ .++|.+||+.+| ++|||++.+++++.+++||+|+|++.|+|+|+|.|+++ .+.+|||++|||
T Consensus 79 ~G~----~~~l~~~r~~g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~----------~~~~v~~~~GDG 143 (617)
T TIGR00204 79 TGR----REKFSTLRQKKG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKG----------ADRKTVCVIGDG 143 (617)
T ss_pred hCc----HHHhcchhhcCC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhC----------CCCEEEEEECCc
Confidence 995 689999999999 55999988766666899999999999999999999886 378999999999
Q ss_pred ccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhc-------chh----------------------HHHH---
Q 005021 242 CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAF-------TEN----------------------VDKR--- 289 (719)
Q Consensus 242 ~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~-------~~~----------------------~~~~--- 289 (719)
+++||++|||+|+|++++|+ +|+|+|||+|+|+++++... ..+ +.++
T Consensus 144 ~~~eG~~~Ea~~~a~~~~l~-~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (617)
T TIGR00204 144 AITAGMAFEALNHAGDLKTD-MIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEE 222 (617)
T ss_pred ccccccHHHHHHHHHhcCCC-EEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 99999999999999999996 59999999999999986321 000 2222
Q ss_pred -----------HhccCceEEEEeeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHh-hc
Q 005021 290 -----------FEGLGWHVIWVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHV-AE 357 (719)
Q Consensus 290 -----------~~a~G~~~~~v~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~-~~ 357 (719)
|++|||+++. +.|++++++ +++.|+..+ .+
T Consensus 223 ~~k~~~~~~~~f~~~G~~~~~-------------------------------------~vDGhd~~~-l~~al~~ak~~~ 264 (617)
T TIGR00204 223 SMKGLVVPGTFFEELGFNYIG-------------------------------------PVDGHDLLE-LIETLKNAKKLK 264 (617)
T ss_pred hhhhccCccchHHHcCCcEEc-------------------------------------ccCCCCHHH-HHHHHHHHhcCC
Confidence 4455554441 234444332 333443221 12
Q ss_pred chhHHHHHHHHHhhhh--hcCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecC
Q 005021 358 GATLEAEWNAKFAEYE--KKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSAD 435 (719)
Q Consensus 358 g~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saD 435 (719)
++.+.+..+.|+++|. +.+|..+|... |.+.....++- ......+++++|+++|.+++++||+|+++++|
T Consensus 265 ~P~~i~~~T~KGkG~~~~e~~~~~~H~~~-------~~~~~~~~~~~-~~~~~~~~~~a~~~~L~~~~~~d~~iv~i~ad 336 (617)
T TIGR00204 265 GPVFLHIQTKKGKGYKPAEKDPIGWHGVG-------PFDLSTGCLPK-SKSALPSYSKIFSDTLCELAKKDNKIVGITPA 336 (617)
T ss_pred CCEEEEEEecCCCCCchhhcChhhccCCC-------CCChhhCCcCC-CCCCCccHHHHHHHHHHHHHhhCcCEEEEECC
Confidence 3333334444455553 34455555331 11111000000 01123578999999999999999999999999
Q ss_pred CCCCccccccccccCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHH-HhhhcCCEEEE
Q 005021 436 LASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYV 514 (719)
Q Consensus 436 l~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~-~a~~~~pV~~v 514 (719)
+.+++. +..|++ +||+||||+|||||+||++|+|||+.| ++||+++|++|++|+||||++ .|++++||+|+
T Consensus 337 ~~~~~~-----~~~f~~-~fP~R~~d~GIaEq~~vg~AaGlA~~G--~~Pvv~~~a~Fl~ra~dQi~~~~a~~~lpV~i~ 408 (617)
T TIGR00204 337 MPEGSG-----LDKFSR-KFPDRYFDVAIAEQHAVTFAAGMAIEG--YKPFVAIYSTFLQRAYDQVVHDVCIQKLPVLFA 408 (617)
T ss_pred ccCCcC-----hHHHHH-HCccccccCCccHHHHHHHHHHHHHCC--CEEEEEecHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 864432 456876 899999999999999999999999999 699999999999999999876 59999999999
Q ss_pred EecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCC-CCccccccc
Q 005021 515 MTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAG-TSIDGVEKG 593 (719)
Q Consensus 515 ~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~-~~~~~~~~G 593 (719)
++++|+. |+||+|||+++|+++||+||||+|++|+|+.|++.+|++|++..++|+|||++|+..+.++. +..+.+++|
T Consensus 409 ~~~~G~~-g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~~~~~~Pv~ir~~r~~~~~~~~~~~~~~~~~G 487 (617)
T TIGR00204 409 IDRAGIV-GADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHYDDGPIAVRYPRGNAVGVELTPEPEKLPIG 487 (617)
T ss_pred EECCCcC-CCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhCCCCCEEEEEccCCcCCcccCCccccccCC
Confidence 9888874 89999999999999999999999999999999999999999744599999999987654331 223568899
Q ss_pred cEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcccccc
Q 005021 594 AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF 673 (719)
Q Consensus 594 ~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~ 673 (719)
+++++++ |.|+|||++|.|+++|++||++|+++||+++|||++|++|||++++. +++.+++ .+||+||+...
T Consensus 488 k~~vlr~----G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~lkPlD~e~i~--~~~~k~~--~vvtvEE~~~~ 559 (617)
T TIGR00204 488 KSEVLRK----GEKILILGFGTLVPEALEVAESLNEKGIEATVVDARFVKPLDEELIL--EIAASHE--KLVTVEENAIM 559 (617)
T ss_pred ceEEEEc----CCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCcCCcCCHHHHH--HHHhhcC--eEEEEECCCCc
Confidence 9999987 79999999999999999999999999999999999999999999875 4554554 36999999875
Q ss_pred -Cchhh----h-----cCCceEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 674 -GWEKI----V-----GSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 674 -G~~~~----~-----~~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
|+++. + ..++.++|+ |.|+++|++++|+++||||+++|+++|++++
T Consensus 560 GGlGs~v~~~l~~~~~~~~v~~ig~~d~~~~~g~~~~L~~~~Gl~~~~I~~~i~~~~ 616 (617)
T TIGR00204 560 GGAGSAVLEFLMDQNKLVPVKRLGIPDFFIPHGTQEEVLAELGLDTAGMEAKILAWL 616 (617)
T ss_pred cChHHHHHHHHHhcCCCCCeEEEeCCCcCcCCCCHHHHHHHHCcCHHHHHHHHHHhh
Confidence 56542 2 236788999 7999999999999999999999999999874
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). |
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-96 Score=847.30 Aligned_cols=544 Identities=23% Similarity=0.305 Sum_probs=435.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL 161 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l 161 (719)
++. +.|+++|++||.++++++.++ +||+|++||++||+++||++ ||. +|||||||+|||+ |+|++|
T Consensus 21 l~~-~~l~~~a~~iR~~ii~~~~~~-~GH~g~~ls~vel~~aL~~~---~~~------prDr~i~s~GH~~---Y~~~~l 86 (641)
T PRK12571 21 LSD-AELEQLADELRAEVISAVSET-GGHLGSSLGVVELTVALHAV---FNT------PKDKLVWDVGHQC---YPHKIL 86 (641)
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHHh-CCCcCCCchHHHHHHHHHHh---cCC------CCCcEEEECchHH---HHHHHH
Confidence 443 449999999999999999985 79999999999999999955 553 5999999999999 999999
Q ss_pred hCCCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccc
Q 005021 162 AGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG 241 (719)
Q Consensus 162 ~G~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG 241 (719)
+| +.++|++|||.+|++ |||++.++|++.+..||.|++++.|+|+|+|.++.+ .+++|||++|||
T Consensus 87 ~g----~~~~l~~~r~~~~l~-g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~----------~~~~v~~v~GDG 151 (641)
T PRK12571 87 TG----RRDRFRTLRQKGGLS-GFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQ----------PDGDVVAVIGDG 151 (641)
T ss_pred hC----CHHHHhhhhhCCCcC-CCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhC----------CCCeEEEEEeCc
Confidence 99 478999999999955 999998999999999999999999999999999875 378999999999
Q ss_pred ccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhc--------chhH---------------------------
Q 005021 242 CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAF--------TENV--------------------------- 286 (719)
Q Consensus 242 ~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~--------~~~~--------------------------- 286 (719)
+++||++|||+++|+++++ ||++|+|||+|+|+++++... .+..
T Consensus 152 ~~~eG~~~Eal~~a~~~~~-~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (641)
T PRK12571 152 SLTAGMAYEALNNAGAADR-RLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARE 230 (641)
T ss_pred hhhcchHHHHHHHHHHhCC-CEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 9999999999999999997 899999999999999996211 1111
Q ss_pred --------HHHHhccCceEEEEeeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhh--
Q 005021 287 --------DKRFEGLGWHVIWVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVA-- 356 (719)
Q Consensus 287 --------~~~~~a~G~~~~~v~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~-- 356 (719)
.++|++|||+++. +.|++++.+ +++.|+..+.
T Consensus 231 ~~~~~~~~~~~f~a~G~~~~~-------------------------------------~vdGhd~~~-l~~al~~ak~~~ 272 (641)
T PRK12571 231 LVTGMIGGGTLFEELGFTYVG-------------------------------------PIDGHDMEA-LLSVLRAARARA 272 (641)
T ss_pred hhhhccchhhHHHHcCCEEEC-------------------------------------ccCCCCHHH-HHHHHHHHHhCC
Confidence 2566666666551 123333221 2333322211
Q ss_pred cchhHHHHHHHHHhhh--hhcCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEec
Q 005021 357 EGATLEAEWNAKFAEY--EKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSA 434 (719)
Q Consensus 357 ~g~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~sa 434 (719)
+++.+.+..+.++++| .+.++..+|... |.+......+. ......+++++|+++|.+++++||+++++++
T Consensus 273 ~~P~~I~~~T~kGkG~~~~e~~~~~~Hg~~-------~f~~~~~~~~~-~~~~~~~~~~~f~~~L~~la~~d~~iv~isa 344 (641)
T PRK12571 273 DGPVLVHVVTEKGRGYAPAEADEDKYHAVG-------KFDVVTGLQKK-SAPSAPSYTSVFGEELTKEAAEDSDIVAITA 344 (641)
T ss_pred CCCEEEEEEecCccCcchhhcCCCcccCCC-------CcCCCCCcccC-CCccchhHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 1222222233333343 344444555321 11111100000 0011347899999999999999999999999
Q ss_pred CCCCCccccccccccCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHH-HhhhcCCEEE
Q 005021 435 DLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIY 513 (719)
Q Consensus 435 Dl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~-~a~~~~pV~~ 513 (719)
|+.+++ ++..|++ +||+||||+|||||+|+++|+|||+.| ++||+++|++|++|++|||++ +|++++||+|
T Consensus 345 dl~~~~-----~~~~f~~-~~p~R~id~GIaE~~mvg~AaGlA~~G--~~P~v~~f~~Fl~ra~dQI~~~~a~~~lpv~~ 416 (641)
T PRK12571 345 AMPLGT-----GLDKLQK-RFPNRVFDVGIAEQHAVTFAAGLAAAG--LKPFCAVYSTFLQRGYDQLLHDVALQNLPVRF 416 (641)
T ss_pred CccCCC-----ChHHHHH-hCCCcccccCccHHHHHHHHHHHHHCC--CEEEEEehHHHHHHHHHHHHHHHhhcCCCeEE
Confidence 996653 2456866 899999999999999999999999998 799999999999999999976 6999999999
Q ss_pred EEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCC-CCCcccccc
Q 005021 514 VMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA-GTSIDGVEK 592 (719)
Q Consensus 514 v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~-~~~~~~~~~ 592 (719)
+++++|+ .|+||+|||++||+++||+|||++|++|+|+.|++.++++|++..++|+|||++|+..+... +...+.+++
T Consensus 417 v~~~~G~-~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~~ 495 (641)
T PRK12571 417 VLDRAGL-VGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAHDDGPIAVRFPRGEGVGVEIPAEGTILGI 495 (641)
T ss_pred EEECCCc-CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCcEEEEEecCcCCccccCCCCccccC
Confidence 9977776 59999999999999999999999999999999999999999964489999999998765322 112245788
Q ss_pred ccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccc-c
Q 005021 593 GAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAG-S 671 (719)
Q Consensus 593 G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~-~ 671 (719)
|++.++++ |+|++||+||+|++.|++||++|+++||+++|||+++++|||++.+ .++.+++ .. +++||+ .
T Consensus 496 gk~~vlr~----G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~i---~sv~k~~-~v-vvveE~~~ 566 (641)
T PRK12571 496 GKGRVPRE----GPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFVKPLDEALT---DLLVRHH-IV-VIVEEQGA 566 (641)
T ss_pred ceeEEEec----CCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHHH---HHHhhhC-CE-EEEECCCC
Confidence 99888887 7999999999999999999999999999999999999999999765 4677776 33 555555 4
Q ss_pred ccCchhhh------------cCCceEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 672 TFGWEKIV------------GSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 672 ~~G~~~~~------------~~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
..||++.+ ..++.++|+ |.|+++|+.++++++||||+++|+++|++++
T Consensus 567 ~gG~g~~v~~~l~~~~~~~l~~~v~~ig~~d~f~~~g~~~el~~~~gl~~~~I~~~i~~~l 627 (641)
T PRK12571 567 MGGFGAHVLHHLADTGLLDGGLKLRTLGLPDRFIDHASREEMYAEAGLTAPDIAAAVTGAL 627 (641)
T ss_pred CCCHHHHHHHHHHhcCccccCCCeEEEecCCcCCCCCCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 56787632 235678999 8999999999999999999999999998764
|
|
| >PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-95 Score=844.89 Aligned_cols=612 Identities=22% Similarity=0.245 Sum_probs=500.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcCC------CCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKANS------GHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~~------GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~ 155 (719)
..+.++++++++.||+++++||.+++. ||+|+++|+++|+.+||.++||++ |+|.+|| +|+|+||.+|++
T Consensus 83 pgd~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~---~~~~~~D-~V~skGHasp~l 158 (896)
T PRK13012 83 PGDLALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRGR---DDAGGGD-LVYFQPHSAPGI 158 (896)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHHHHHHHHHHhhcCCC---CCCCCCC-EEEECcchHHHH
Confidence 556777888999999999999999998 999999999999999999999987 4788999 699999999999
Q ss_pred HHHHHHhCCCCCChhHHhhhhhc--CCCCCCCCCCCCCC-CccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCc
Q 005021 156 YALLHLAGYDSVQEDDLKNFRQW--GSKTPGHPENFETP-GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDH 232 (719)
Q Consensus 156 Ya~l~l~G~~~~~~~~l~~~r~~--~~~~~g~p~~~~~p-gi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~ 232 (719)
|+.+++.|++ +.++|++|||. ++.+++||++...| +++++||++|+|+++|+|+|++.||+..+. -.+..++
T Consensus 159 YA~~~l~G~l--~~e~L~~fR~~~~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g---~~~~~~~ 233 (896)
T PRK13012 159 YARAFLEGRL--SEEQLDHFRQEIGGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRG---LKDTSGR 233 (896)
T ss_pred HHHHHHcCCC--CHHHHHHhcCCCCCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccc---cccCCCC
Confidence 9999999996 99999999998 45566899987777 699999999999999999999999875431 1123579
Q ss_pred EEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhh-c-chhHHHHHhccCceEEEE----------
Q 005021 233 YTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA-F-TENVDKRFEGLGWHVIWV---------- 300 (719)
Q Consensus 233 ~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~-~-~~~~~~~~~a~G~~~~~v---------- 300 (719)
+|||++|||||+||++|||+.+|++++|+|||||||+|.+++|+++... . .+++.++|+++||+|++|
T Consensus 234 ~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~ 313 (896)
T PRK13012 234 KVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALF 313 (896)
T ss_pred eEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHh
Confidence 9999999999999999999999999999999999999999999999643 2 589999999999999965
Q ss_pred --------------------------------------------------------------------------------
Q 005021 301 -------------------------------------------------------------------------------- 300 (719)
Q Consensus 301 -------------------------------------------------------------------------------- 300 (719)
T Consensus 314 ~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~~~~ 393 (896)
T PRK13012 314 ARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRHKGQ 393 (896)
T ss_pred cCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCC
Confidence
Q ss_pred ------eeeecCCCc-cccccccccC-CCCCHHHHHHHHHHcCCCCC-------CCCCcHHHHHHHHHHhhcchhHHHHH
Q 005021 301 ------TTTIGFGSP-NKANSYSVHG-SALGAKEVDATRKNLGWPYE-------PFHVPEDVKKHWSRHVAEGATLEAEW 365 (719)
Q Consensus 301 ------~t~~g~g~~-~~~~~~~~h~-~~l~~~~~~~~~~~l~~~~~-------~~~~~~~v~~~~~~~~~~g~~~~~~~ 365 (719)
+|+||+|.+ ..+++..+|+ .+++.++++.+++.+++|.+ ||..|++....++.+..++
T Consensus 394 PtvIla~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~~g~p~~d~~~~~~pf~~p~~~~~~~~~l~~r~------- 466 (896)
T PRK13012 394 PTVILAKTKKGYGMGEAGEGRMTTHQQKKLDVEALKAFRDRFRLPLSDEQLEQLPFYKPAEDSPEMRYLHARR------- 466 (896)
T ss_pred CEEEEEEeeecCCCCcccCCCcccccCCCCCHHHHHHHHHHcCCCCChhhhccCCCcCCccccHHHHHHHHHH-------
Confidence 799999976 5577888998 78999999999999999765 7888877666654432221
Q ss_pred HHHHhhhhhcCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhh---CCceEEEecCCCCCccc
Q 005021 366 NAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKT---LPGLLGGSADLASSNMT 442 (719)
Q Consensus 366 ~~~~~~~~~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~---dp~iv~~saDl~~s~~~ 442 (719)
+.+.+|.+..+ ..... ++...+..|...++. ....+.+||.+|+++|.+|++. .|+||++++|++.++++
T Consensus 467 -~~l~g~~P~r~---~~~~~-l~~p~~~~~~~~~~~--~~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm 539 (896)
T PRK13012 467 -AALGGYLPRRR---TAAPP-LPVPPLSAFAQFALG--AGGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGM 539 (896)
T ss_pred -HHhcCcCCccc---ccccc-cCCCchhhHHHhhcc--cCCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCc
Confidence 13334432111 11111 111112223222221 1235689999999999999987 99999999999855432
Q ss_pred ---------cccc-----------cccCcccCCCCCccccccccchHHH--HHHHH--HhcCCCCccEEEehhhh-HHhH
Q 005021 443 ---------LLKM-----------FGDFQKDTPEERNVRFGVREHGMGA--ICNGI--ALHSPGLIPYCATFFVF-TDYM 497 (719)
Q Consensus 443 ---------~~~g-----------~~~f~~~~~p~R~~d~GIaE~~~vg--~AaGl--A~~G~~~~Pv~~~y~~F-~~ra 497 (719)
+... +..|. ++||+|||++||+||+|++ +|+|+ |++|.|++||+.+|+.| .+|+
T Consensus 540 ~~~f~~~~i~~~~gq~y~~~d~~~~~~yk-e~~pgR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~ 618 (896)
T PRK13012 540 ANLFRQVGIYSPLGQLYEPEDAGSLLYYR-EAKDGQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRV 618 (896)
T ss_pred ccccccccccccccccccccchhHHhhhh-hCCCCcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHH
Confidence 1111 12232 4899999999999999987 77777 55565589999999999 6799
Q ss_pred HHHHHHH-hhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc-----CCCcEE
Q 005021 498 RAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVAN-----RKRPSI 571 (719)
Q Consensus 498 ~dqir~~-a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~-----~~~P~~ 571 (719)
+||||+. +++..+|+++++|+|.++|++|+|||+++|++++|+||||+||.|+|+.|++.+++.++++ .++|+|
T Consensus 619 ~Dqir~a~~~~~~~vlig~T~gg~tlg~dG~THQ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~Y 698 (896)
T PRK13012 619 GDLIWAAADQRARGFLLGATAGRTTLGGEGLQHQDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYY 698 (896)
T ss_pred HHHHHHHHhcccCCeEEEEeCcccccCCCCCCCcchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEE
Confidence 9999987 6777789999999999999999999999999999999999999999999999999998743 268999
Q ss_pred EEEcCCCCC--CCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhC-CCcEEEEecCChhhHHHH
Q 005021 572 LALSRQKLP--HLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG-GKAVRVVSFVSWELFDEQ 648 (719)
Q Consensus 572 irl~r~~~~--~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~-Gi~v~VId~~~l~pld~~ 648 (719)
||++|++++ .++.+..+.+.+|+|++.+.. .++|++||++|++|++|++||++|+++ ||+++|||++|++|||++
T Consensus 699 IrL~r~~~~~p~~~~~~~~~i~kG~y~l~~~~--~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d 776 (896)
T PRK13012 699 LTVMNENYAQPALPEGAEEGILKGMYRLAAAA--EAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRD 776 (896)
T ss_pred EEecCCCCCCCCCCccchhccccCcEEEeccC--CCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHH
Confidence 999999884 444432356888999886532 257999999999999999999999999 999999999999999999
Q ss_pred HH----------------HhhhhhccCCCceEEEEcccc---ccCchhhhcCCceEEeeCcCCCCCCHHHHHHHhCCCHH
Q 005021 649 SD----------------AYKESVLPAAVSARVSIEAGS---TFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAE 709 (719)
Q Consensus 649 ~~----------------~~~~sv~~~~~~~vvvvE~~~---~~G~~~~~~~~~~~ig~d~f~~~g~~~el~~~~gl~~e 709 (719)
.+ .|...+++...+.+|+++++. ...|.+++..++.++|+|.|+.||++++|+++||+|++
T Consensus 777 ~i~~E~hn~~gglg~~~~sy~~~~l~~~~~p~Va~~D~~~aVae~l~~~~~~~~~~LGvD~FG~Sg~~~~L~~~fGlda~ 856 (896)
T PRK13012 777 GLAAERANLLGPAEEARVPYVTQCLAGTRGPVVAATDYVRAVPEQIRAFVPARYVTLGTDGFGRSDTRAALRRFFEVDRH 856 (896)
T ss_pred HHHHHHHhhcCCCccccccHHHHhhcccCCCeEEecchHHHHHHHHHHhCCCCeEEEeeCCCCCCCCHHHHHHHhCCCHH
Confidence 66 555566654222358888863 34566677667788999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 005021 710 AVITAAKEVC 719 (719)
Q Consensus 710 ~I~~~i~~~l 719 (719)
.|+++++++|
T Consensus 857 ~Iv~aal~~L 866 (896)
T PRK13012 857 SIVLAALKAL 866 (896)
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
|
| >PLN02234 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-96 Score=834.61 Aligned_cols=505 Identities=21% Similarity=0.282 Sum_probs=406.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCC
Q 005021 85 AALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGY 164 (719)
Q Consensus 85 ~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~ 164 (719)
.+.|+++|++||+.+++++++. +||+|++||++||+++||++ ||. +|||||||+|||+ |+|++++|+
T Consensus 81 ~~~L~~la~eiR~~ii~~~~~~-~GHlgssLs~vEl~~aL~~v---f~~------p~DriI~s~GHqa---ya~~~ltgr 147 (641)
T PLN02234 81 IKELKVLSDELRSDVIFNVSKT-GGHLGSNLGVVELTVALHYI---FNT------PHDKILWDVGHQS---YPHKILTGR 147 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-CCCccccchHHHHHHHHHHh---cCC------CCCeEEEecchhH---HHHHHHHhh
Confidence 4569999999999999999985 99999999999999999985 552 5899999999999 999999994
Q ss_pred CCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccC
Q 005021 165 DSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 244 (719)
Q Consensus 165 ~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~ 244 (719)
+++|.+|||.+| +.|||++.++|||++++||+|+|||.|+|||+|+++++ .+++|||++||||++
T Consensus 148 ----~~~l~t~r~~gg-l~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g----------~~~~v~~viGDGel~ 212 (641)
T PLN02234 148 ----RGKMKTIRQTNG-LSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKG----------MNNSVVSVIGDGAMT 212 (641)
T ss_pred ----hhhhcccccCCC-cCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCC----------CCCeEEEEEccchhh
Confidence 578999999999 55999999999999999999999999999999999886 478999999999999
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEEeCCCCC------cccchhhh-cc---------------hhHHHHHhccCceEE-EEe
Q 005021 245 EGIANEASSLAGHLGLGKLIAFYDDNHIS------IDGDTEIA-FT---------------ENVDKRFEGLGWHVI-WVT 301 (719)
Q Consensus 245 eG~~~EAln~A~~~~L~nli~ivddN~~s------is~~~~~~-~~---------------~~~~~~~~a~G~~~~-~v~ 301 (719)
||++|||||+|++.+ +|||+|+|||+++ +++++... .. ++..++|++|||+++ .|
T Consensus 213 eG~~wEAl~~a~~~~-~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~v- 290 (641)
T PLN02234 213 AGQAYEAMNNAGYLH-SNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPV- 290 (641)
T ss_pred hHHHHHHHHHHhhhC-CCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeE-
Confidence 999999999999765 8999999999994 56655321 11 356789999999988 54
Q ss_pred eeecCCCccccccccccCCCCCHHHHHHHHHHcCC-C-CCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchh
Q 005021 302 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-P-YEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEE 379 (719)
Q Consensus 302 t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~-~-~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 379 (719)
.| | +-+++...+++... + .+|..+- . .+.||+.+ .+.+..+..
T Consensus 291 --DG------------H----d~~~l~~al~~~k~~~~~~P~vI~------~--~T~KGkGv---------~~~E~~~~~ 335 (641)
T PLN02234 291 --DG------------H----NIDDLVSILETLKSTKTIGPVLIH------V--VTEKGRGY---------PYAERADDK 335 (641)
T ss_pred --CC------------C----CHHHHHHHHHHHHhcCCCCCEEEE------E--EEecCCCc---------chhhcCCcc
Confidence 12 1 22333333332221 1 1232211 0 22334322 123444555
Q ss_pred hhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCc
Q 005021 380 AAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERN 459 (719)
Q Consensus 380 ~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~ 459 (719)
+|... |.+.+...+ ........+++++|+++|.+++++||+|+++++|+++++. ++.|++ +||+||
T Consensus 336 ~H~~~-------~~~~~~g~~-~~~~~~~~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~-----~~~f~~-~fPdR~ 401 (641)
T PLN02234 336 YHGVL-------KFDPETGKQ-FKNISKTQSYTSCFVEALIAEAEADKDIVAIHAAMGGGTM-----LNLFES-RFPTRC 401 (641)
T ss_pred cCCCC-------CCCcccccc-ccCCCCCCCHHHHHHHHHHHHHHHCcCEEEEECCCCCCcc-----hHHHHH-Hccccc
Confidence 55321 111100000 0011123578999999999999999999999999976432 466866 899999
Q ss_pred cccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHH-HhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHH
Q 005021 460 VRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASF 538 (719)
Q Consensus 460 ~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~-~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~l 538 (719)
||+|||||+|||+|+|||+.| ++|||++|++|++|+||||++ +|++++||+|++++.|+ +|+||+|||+++|+++|
T Consensus 402 fdvGIAEq~~Vg~AaGLA~~G--~rPvv~~fs~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~-~g~dG~TH~~~~Dia~l 478 (641)
T PLN02234 402 FDVGIAEQHAVTFAAGLACEG--LKPFCTIYSSFMQRAYDQVVHDVDLQKLPVRFAIDRAGL-MGADGPTHCGAFDVTFM 478 (641)
T ss_pred cCCCcCHHHHHHHHHHHHHCC--CeEEEEehHHHHHHHHHHHHHHHhhcCCCEEEEEeCCcc-CCCCCccccccHHHHHH
Confidence 999999999999999999999 699999999999999999875 59999999999977665 58899999999999999
Q ss_pred cCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCC--CC-CccccccccEEEecCCCCCCCCEEEEEeCH
Q 005021 539 RAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA--GT-SIDGVEKGAYIISDNSSGNKPDVILIGTGS 615 (719)
Q Consensus 539 r~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~--~~-~~~~~~~G~~~i~~~~~~~g~dvtIva~G~ 615 (719)
|+||||+|++|+|+.|++.++++|+...++|+|||++|+..+... .. ....+++|+++++++ |.|+|||+||+
T Consensus 479 r~iPnl~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~R~~~~~~~~~~~~~~~~~~iGk~~vlre----G~dvtIva~G~ 554 (641)
T PLN02234 479 ACLPNMIVMAPSDEAELFNMVATAAAIDDRPSCFRYHRGNGIGVSLPPGNKGVPLQIGRGRILRD----GERVALLGYGS 554 (641)
T ss_pred hcCCCCEEEeeCCHHHHHHHHHHHHhCCCCCEEEEeecccccccccCCCCccccccCceEEEEEe----CCCEEEEEecH
Confidence 999999999999999999999998865579999999998764322 11 123578999988887 78999999999
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhh
Q 005021 616 ELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIV 679 (719)
Q Consensus 616 ~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~ 679 (719)
||++|++||++|+++||+++|||++|++|||.+.+ .++.+++. .+||+||+...|+++.+
T Consensus 555 ~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i---~sl~k~~~-~vVt~Ee~~~GG~Gs~V 614 (641)
T PLN02234 555 AVQRCLEAASMLSERGLKITVADARFCKPLDVALI---RSLAKSHE-VLITVEEGSIGGFGSHV 614 (641)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHH---HHHHHhCC-EEEEECCCCCCcHHHHH
Confidence 99999999999999999999999999999999875 36777764 46999999998887644
|
|
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-95 Score=835.99 Aligned_cols=546 Identities=23% Similarity=0.295 Sum_probs=441.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL 161 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l 161 (719)
|+.++ |+++|++||+++++|+.+ ++||+|++||++|++++||+. ||+ +|||||||+||++ |+++++
T Consensus 19 ~~~~~-l~~~a~~iR~~~~~~~~~-~~gH~g~~ls~~~i~~~L~~~---~~~------~rDr~ils~GH~~---y~~~~~ 84 (580)
T PRK05444 19 LSEEE-LPQLADEIREFLIDVVSK-TGGHLGSNLGVVELTVALHYV---FDT------PKDRIIWDVGHQA---YPHKIL 84 (580)
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHh-cCCCcCCCccHHHHHHHHHHh---cCC------CCccEEEeccHHH---HHHHHH
Confidence 55444 999999999999999987 799999999999999999975 664 8999999999999 999999
Q ss_pred hCCCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccc
Q 005021 162 AGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG 241 (719)
Q Consensus 162 ~G~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG 241 (719)
+|+ .++|++||+.+|+ +|||++.++||+++++|++|+|++.|+|+|+|.|+++. .+++|||++|||
T Consensus 85 ~g~----~~~l~~~~~~~s~-~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~---------~~~~v~~i~GDG 150 (580)
T PRK05444 85 TGR----RDRFDTLRQKGGL-SGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGG---------EDRKVVAVIGDG 150 (580)
T ss_pred hCc----HHHhcCcccCCCC-CCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCC---------CCCeEEEEEccc
Confidence 994 6889999999995 69999888999999999999999999999999998731 368999999999
Q ss_pred ccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhh----cchhHHHHHhccCceEEEEeeeecCCCccccccccc
Q 005021 242 CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA----FTENVDKRFEGLGWHVIWVTTTIGFGSPNKANSYSV 317 (719)
Q Consensus 242 ~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~----~~~~~~~~~~a~G~~~~~v~t~~g~g~~~~~~~~~~ 317 (719)
+++||++|||+++|++++ .||++|+|||+++|+++++.. ...++.++|++|||+++.+ +.|.
T Consensus 151 ~l~eG~~~Eal~~A~~~~-~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~--vdG~----------- 216 (580)
T PRK05444 151 ALTGGMAFEALNNAGDLK-SDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGP--IDGH----------- 216 (580)
T ss_pred ccccCHHHHHHHHHHhhC-CCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeee--eCCC-----------
Confidence 999999999999999999 689999999999999998632 2356788999999998841 1221
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchhhhhhhhhhcCCCCCcccc
Q 005021 318 HGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEK 397 (719)
Q Consensus 318 h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~p~~~~~ 397 (719)
+.+++...+++......|..+.- .+.+|+.+. +.++++..+|... +..-..
T Consensus 217 -----d~~~l~~al~~a~~~~~P~lI~~--------~T~kg~G~~---------~~e~~~~~~h~~~-------~~~~~~ 267 (580)
T PRK05444 217 -----DLDALIETLKNAKDLKGPVLLHV--------VTKKGKGYA---------PAEADPIKYHGVG-------KFDPET 267 (580)
T ss_pred -----CHHHHHHHHHHHHhCCCCEEEEE--------EecCCcCCC---------hhhcCccccCCCC-------CCCccc
Confidence 22343333332111112322110 123333211 1223333344211 100000
Q ss_pred cCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccccccchHHHHHHHHH
Q 005021 398 ALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIA 477 (719)
Q Consensus 398 ~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA 477 (719)
............++|++++++|.+++++||+++++++|+.+++. +.+|++ +||+||||+||+||+|+|+|+|||
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~-----~~~f~~-~~p~R~i~~GIaE~~mvg~A~GlA 341 (580)
T PRK05444 268 GEQPKSSKPGKPSYTKVFGETLCELAEKDPKIVAITAAMPEGTG-----LVKFSK-RFPDRYFDVGIAEQHAVTFAAGLA 341 (580)
T ss_pred CCccccCCCCcccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCC-----HHHHHH-HhhhhccCCChHHHHHHHHHHHHH
Confidence 00000001122578999999999999999999999999865532 345866 899999999999999999999999
Q ss_pred hcCCCCccEEEehhhhHHhHHHHHHH-HhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHH
Q 005021 478 LHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETA 556 (719)
Q Consensus 478 ~~G~~~~Pv~~~y~~F~~ra~dqir~-~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~ 556 (719)
+.| ++||+++|++|++|++|||++ .|++++||+++++|+|. .|+||+|||++||+++||+|||++|++|+|+.|++
T Consensus 342 ~~G--~~p~~~~f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~-~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~ 418 (580)
T PRK05444 342 TEG--LKPVVAIYSTFLQRAYDQVIHDVALQNLPVTFAIDRAGL-VGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELR 418 (580)
T ss_pred HCC--CeeEEEeeHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCc-CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHH
Confidence 999 699999999999999999987 59999999999999987 57899999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEE
Q 005021 557 GAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRV 636 (719)
Q Consensus 557 ~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~V 636 (719)
+++++|++..++|+|||++|+..+..+.+..+.+++|++.++++ |+|+|||++|+||++|++|+++|+ +++|
T Consensus 419 ~~l~~a~~~~~~P~~ir~~r~~~~~~~~~~~~~~~~Gk~~vl~~----G~dvtIia~G~~v~~al~Aa~~L~----~~~V 490 (580)
T PRK05444 419 QMLYTALAYDDGPIAIRYPRGNGVGVELPELEPLPIGKGEVLRE----GEDVAILAFGTMLAEALKAAERLA----SATV 490 (580)
T ss_pred HHHHHHHhCCCCcEEEEecCCCCCCCCCCCcccccCCceEEEEc----CCCEEEEEccHHHHHHHHHHHHhC----CCEE
Confidence 99999996458999999999987654322235688999998887 789999999999999999999995 8999
Q ss_pred EecCChhhHHHHHHHhhhhhccCCCceEEEEccccc-cCchhhh---------cCCceEEee-CcCCCCCCHHHHHHHhC
Q 005021 637 VSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIV---------GSKGKAIGI-DRFGASAPAGKIYKEFG 705 (719)
Q Consensus 637 Id~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~-~G~~~~~---------~~~~~~ig~-d~f~~~g~~~el~~~~g 705 (719)
||++|++|||++.+. +++.+++ .+|++||+.. .||++.+ ..++.++|+ |.|+++|++++|+++||
T Consensus 491 Id~~~i~p~D~~~i~--~~~~~~~--~vv~vEe~~~~gG~g~~va~~l~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~g 566 (580)
T PRK05444 491 VDARFVKPLDEELLL--ELAAKHD--LVVTVEEGAIMGGFGSAVLEFLADHGLDVPVLNLGLPDEFIDHGSREELLAELG 566 (580)
T ss_pred EEeCcCCccCHHHHH--HHHhcCC--eEEEEECCCCCCCHHHHHHHHHHhhcCCCCEEEEecCCcCCCCCCHHHHHHHHC
Confidence 999999999998764 3444443 3699999998 5787643 235678999 89999999999999999
Q ss_pred CCHHHHHHHHHHhC
Q 005021 706 ITAEAVITAAKEVC 719 (719)
Q Consensus 706 l~~e~I~~~i~~~l 719 (719)
||+++|+++|++++
T Consensus 567 l~~~~I~~~i~~~~ 580 (580)
T PRK05444 567 LDAEGIARRILELL 580 (580)
T ss_pred cCHHHHHHHHHhhC
Confidence 99999999999864
|
|
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-94 Score=826.12 Aligned_cols=543 Identities=19% Similarity=0.231 Sum_probs=438.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL 161 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l 161 (719)
++ .+.|++||++||.++++.+.+ ++||++++||++|++++||++ ||+ ++|+||||+||++ |+|+++
T Consensus 15 l~-~~~l~~l~~~ir~~~~~~~~~-~~Gh~~~~lg~vel~~al~~~---f~~------~~D~ii~d~ghr~---~~~~l~ 80 (581)
T PRK12315 15 LS-LDELEQLASEIRTALLEKDSA-HGGHVGPNLGVVELTIALHYV---FNS------PKDKIVWDVSHQS---YPHKML 80 (581)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHh-cCCCcCcchhHHHHHHHHHhh---cCC------CCCcEEEecCCch---HHHHHH
Confidence 44 456999999999999999976 899999999999999999988 887 7999999999999 999999
Q ss_pred hCCCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccc
Q 005021 162 AGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG 241 (719)
Q Consensus 162 ~G~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG 241 (719)
+|+ ...+.+.|++++.+ |||++.+++++.+.+||+|+|+|.|+|+|+|.|+++ .+++|||++|||
T Consensus 81 ~G~----~~~~~~~~~~g~~~-G~~~~~~s~~~~~~~g~~~~~ls~A~G~A~A~k~~~----------~~~~vv~~iGDG 145 (581)
T PRK12315 81 TGR----KEAFLDPDHYDDVT-GYTNPEESEHDFFTVGHTSTSIALATGLAKARDLKG----------EKGNIIAVIGDG 145 (581)
T ss_pred cCC----ccchhhHHHcCCCC-CCCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHhcC----------CCCeEEEEECch
Confidence 995 45567888888887 999998888888999999999999999999999876 378999999999
Q ss_pred ccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhh----------cchhHHHHHhccCceEEEEeeeecCCCccc
Q 005021 242 CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA----------FTENVDKRFEGLGWHVIWVTTTIGFGSPNK 311 (719)
Q Consensus 242 ~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~----------~~~~~~~~~~a~G~~~~~v~t~~g~g~~~~ 311 (719)
+++||++|||||+|+.|++ |||+|||||+|+|+++++.. ...++.++|++|||+++.| +.|.
T Consensus 146 ~~~eG~~~EAln~A~~~k~-~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v--~DG~----- 217 (581)
T PRK12315 146 SLSGGLALEGLNNAAELKS-NLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYV--EDGN----- 217 (581)
T ss_pred hhhcchHHHHHHHHHhhCC-CEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEe--eCCC-----
Confidence 9999999999999999995 89999999999999998531 1234578999999998874 1121
Q ss_pred cccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhh--hcCchhhhhhhhhhcC
Q 005021 312 ANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYE--KKYPEEAAEFKSISSG 389 (719)
Q Consensus 312 ~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~g 389 (719)
+-+++...+++......|. +.+..+.++++|. ++++..+|..
T Consensus 218 -----------D~~~l~~a~~~a~~~~gP~-------------------~i~~~T~kG~G~~~~~~~~~~~h~~------ 261 (581)
T PRK12315 218 -----------DIESLIEAFKEVKDIDHPI-------------------VLHIHTLKGKGYQPAEENKEAFHWH------ 261 (581)
T ss_pred -----------CHHHHHHHHHHHHhCCCCE-------------------EEEEEeecCCCCChhhcCHHhcCCC------
Confidence 2223322222211001122 2222222233332 2344444431
Q ss_pred CCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccccccchH
Q 005021 390 QLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGM 469 (719)
Q Consensus 390 ~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~ 469 (719)
.|.+.....+.. .....+++++++++|.+++++||+++++++|+.++. ++.+|++ +||+||||+|||||+|
T Consensus 262 -~~f~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~-----~~~~f~~-~fP~R~id~GIaEq~~ 332 (581)
T PRK12315 262 -MPFDLETGQSKV--PASGESYSSVTLDYLLKKIKEGKPVVAINAAIPGVF-----GLKEFRK-KYPDQYVDVGIAEQES 332 (581)
T ss_pred -CCCCcccCcccC--CCCCcCHHHHHHHHHHHHhccCCCEEEEeCcccccc-----CcHHHHH-hccccccCCCchHHHH
Confidence 111110000000 001357899999999999999999999999986553 2456866 8999999999999999
Q ss_pred HHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHH-HhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEe
Q 005021 470 GAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLR 548 (719)
Q Consensus 470 vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~-~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~ 548 (719)
+++|+|||+.| ++||+++|++|++|++|||++ +|++++||+|+++++|++ + ||+|||++||+++||+||||+|++
T Consensus 333 v~~AaGlA~~G--~~Pvv~~fs~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~-~-dG~TH~~~~Dia~lr~iPnl~V~~ 408 (581)
T PRK12315 333 VAFASGIAANG--ARPVIFVNSTFLQRAYDQLSHDLAINNNPAVMIVFGGSIS-G-NDVTHLGIFDIPMISNIPNLVYLA 408 (581)
T ss_pred HHHHHHHHHCc--CeEEEEeeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc-C-CCccccccHHHHHHhcCCCCEEEe
Confidence 99999999999 699999999999999999886 599999999999777664 4 999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHH
Q 005021 549 PADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELR 628 (719)
Q Consensus 549 P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~ 628 (719)
|+|+.|++.++++|++..++|+|||++|+..+..+..+ ..+..+++.++++ |.|+|||++|+||++|++||++|+
T Consensus 409 P~d~~e~~~~l~~a~~~~~gP~~ir~~r~~~~~~~~~~-~~~~~~k~~v~~~----g~dvtiia~G~~v~~Al~Aa~~L~ 483 (581)
T PRK12315 409 PTTKEELIAMLEWALTQHEHPVAIRVPEHGVESGPTVD-TDYSTLKYEVTKA----GEKVAILALGDFYELGEKVAKKLK 483 (581)
T ss_pred cCCHHHHHHHHHHHHhCCCCcEEEEEcCCccCCCCCCc-cCcccceEEEEec----CCCEEEEEEchHHHHHHHHHHHHh
Confidence 99999999999999964479999999999876543321 2345678888887 689999999999999999999999
Q ss_pred hC-CCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccC-chhh----hc---CCceEEee-CcCCCCCCHH
Q 005021 629 KG-GKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFG-WEKI----VG---SKGKAIGI-DRFGASAPAG 698 (719)
Q Consensus 629 ~~-Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G-~~~~----~~---~~~~~ig~-d~f~~~g~~~ 698 (719)
++ ||+++|||++|++|||++.+. ++.++.. .+||+||+...| |++. +. .++.++|+ |.|+.+|+++
T Consensus 484 ~~~gi~~~Vid~~~ikPlD~~~i~---~~~~~~~-~vvtvEe~~~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~~g~~~ 559 (581)
T PRK12315 484 EELGIDATLINPKFITGLDEELLE---KLKEDHE-LVVTLEDGILDGGFGEKIARYYGNSDMKVLNYGAKKEFNDRVPVE 559 (581)
T ss_pred hhcCCCEEEEecCcCCCCCHHHHH---HHHhhCC-EEEEEcCCCcCCCHHHHHHHHHHcCCCeEEEecCCCCCCCCCCHH
Confidence 88 999999999999999999764 4555554 469999998854 7653 32 24568999 7899999999
Q ss_pred HHHHHhCCCHHHHHHHHHHhC
Q 005021 699 KIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 699 el~~~~gl~~e~I~~~i~~~l 719 (719)
+|++++|||+++|+++|+++|
T Consensus 560 ~l~~~~Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 560 ELYKRNHLTPEQIVEDILSVL 580 (581)
T ss_pred HHHHHHCcCHHHHHHHHHHHh
Confidence 999999999999999999875
|
|
| >TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-93 Score=827.27 Aligned_cols=610 Identities=22% Similarity=0.252 Sum_probs=477.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcC------CCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKAN------SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~------~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~ 155 (719)
+.+.++++++++.||+++++|+.+++ +||+|+++|++||+.+||.++||++ +.|.+|| ||+|+||++|++
T Consensus 69 pgd~~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a~i~~vLy~~~lr~~---~~~~~rD-~VlskGHasp~l 144 (889)
T TIGR03186 69 PGDLQLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAA---GDASGGD-LVYFQPHSAPGV 144 (889)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHHHHHHHHHHHhCCCC---CCCCCCC-EEEECCchHHHH
Confidence 55778899999999999999999999 7999999999999999999999853 4477888 799999999999
Q ss_pred HHHHHHhCCCCCChhHHhhhhhc--CCCCCCCCCCCCCC-CccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCc
Q 005021 156 YALLHLAGYDSVQEDDLKNFRQW--GSKTPGHPENFETP-GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDH 232 (719)
Q Consensus 156 Ya~l~l~G~~~~~~~~l~~~r~~--~~~~~g~p~~~~~p-gi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~ 232 (719)
|+.+++.|++ +.++|++|||. ++.+++||++...| +++++||++|||++.|+|||++.|+++.+|.+. ..++
T Consensus 145 YA~l~l~G~l--~~e~L~~fRq~~~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~---~~~~ 219 (889)
T TIGR03186 145 YARAFLEGFL--SDAQLAHYRQEIAGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLAR---TEGR 219 (889)
T ss_pred HHHHHHcCCC--CHHHHHHhcCCCCCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccC---CCCc
Confidence 9999999996 99999999998 66677877775556 699999999999999999999999887663222 2579
Q ss_pred EEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh--hcchhHHHHHhccCceEEEE----------
Q 005021 233 YTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIWV---------- 300 (719)
Q Consensus 233 ~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~--~~~~~~~~~~~a~G~~~~~v---------- 300 (719)
+|||++||||++||++|||+.+|++++|+|||+|||+|++++|+++.. ...+++.++|++|||+|++|
T Consensus 220 rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~ 299 (889)
T TIGR03186 220 KVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALF 299 (889)
T ss_pred eEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhh
Confidence 999999999999999999999999999999999999999999999974 33689999999999999976
Q ss_pred --------------------------------------------------------------------------------
Q 005021 301 -------------------------------------------------------------------------------- 300 (719)
Q Consensus 301 -------------------------------------------------------------------------------- 300 (719)
T Consensus 300 ~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~~~~ 379 (889)
T TIGR03186 300 ARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRHEGR 379 (889)
T ss_pred ccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCC
Confidence
Q ss_pred ------eeeecCCCcccc-ccccccC-CCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcch--hHHHHHHHHHh
Q 005021 301 ------TTTIGFGSPNKA-NSYSVHG-SALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGA--TLEAEWNAKFA 370 (719)
Q Consensus 301 ------~t~~g~g~~~~~-~~~~~h~-~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~--~~~~~~~~~~~ 370 (719)
+|+||+|..... ....+|+ .+++.++++.+++.+++|...-.+.. ..+|+.. ...+ .+..+....+.
T Consensus 380 PTvIla~TvkG~G~~~~g~~~~~~H~~~~l~~e~~~~~r~~~g~~~~de~~~~--~~~~~~~-~~s~~~~~l~~~r~~l~ 456 (889)
T TIGR03186 380 PTVILAKTMKGFGMGAIGQGRMTTHQQKKLDVEALLAFRDRFRLPLSDADVEQ--LKFYKPD-EDSAEMRYLHARRAALG 456 (889)
T ss_pred CEEEEEEeeecCCCCcccCccccccCcCcCCHHHHHHHHHHcCCCCChHHhhc--ccccCCC-CCCHHHHHHHHHHHHcC
Confidence 799999975543 3567788 78999999999999998542110000 0011100 0000 01111111222
Q ss_pred hhhhcCchhhh-hhhhhhcCCCCCcccccCCCCCC--CCCcchHHHHHHHHHHHHHh---hCCceEEEecCCCCCcccc-
Q 005021 371 EYEKKYPEEAA-EFKSISSGQLPAGWEKALPTYTP--ESPAEATRNLSQTCLNALAK---TLPGLLGGSADLASSNMTL- 443 (719)
Q Consensus 371 ~~~~~~p~~~~-~~~~~~~g~~p~~~~~~~~~~~~--~~~~~s~r~a~~~~L~~l~~---~dp~iv~~saDl~~s~~~~- 443 (719)
.|.+..+.... .+ ..|. ...++.+.. .....+|+.+|+++|..|++ ..++||.+.+|+..+++..
T Consensus 457 g~~p~r~~~~~~~~------~~p~--~~~~~~~~~~~~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~ 528 (889)
T TIGR03186 457 GYLPRRRTAATHAL------AVPA--LPSWGRFALDAEGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMAN 528 (889)
T ss_pred CCCCCCCCCCcccc------CCCC--cchhhhhhccCCCCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchh
Confidence 23221111000 00 0121 011222332 23568999999999777776 4578999999998765221
Q ss_pred -ccc------------------cccCcccCCCCCccccccccchHHH--HHHHHHhc--CCCCccEEEehhhhH-HhHHH
Q 005021 444 -LKM------------------FGDFQKDTPEERNVRFGVREHGMGA--ICNGIALH--SPGLIPYCATFFVFT-DYMRA 499 (719)
Q Consensus 444 -~~g------------------~~~f~~~~~p~R~~d~GIaE~~~vg--~AaGlA~~--G~~~~Pv~~~y~~F~-~ra~d 499 (719)
++. +..|. +.+|+|||++||+||+|++ +|+|+|+. |.|++||+++|+.|. +|++|
T Consensus 529 ~f~~~gi~~~~gq~y~~~d~~~~~~y~-e~~p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~D 607 (889)
T TIGR03186 529 LFRQVGIYSPLGQRYEPEDLGSMLYYR-EDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGD 607 (889)
T ss_pred hhccccccCcccccCCccchHHHHHHh-hcCCCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHH
Confidence 111 12232 4789999999999999999 99997766 444799999999996 79999
Q ss_pred HHHHHhhhcCCEEEEEecCCC-ccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----c-CCCcEEEE
Q 005021 500 AIRISALCEAGVIYVMTHDSI-GLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA----N-RKRPSILA 573 (719)
Q Consensus 500 qir~~a~~~~pV~~v~~~~g~-g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~-~~~P~~ir 573 (719)
|||+.|+++.+|++++++.|. ++|++|+|||++||++++|+||||+||.|+|+.|++.+++.+++ . .++|+|||
T Consensus 608 qir~a~~~~a~v~lvG~~aG~tTlg~eG~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlR 687 (889)
T TIGR03186 608 LIWAAADQRARGFLIGATSGKTTLGGEGLQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLT 687 (889)
T ss_pred HHHHHhhcCCCcEEEEECCCccCCCCCcccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 999999999999999999999 69999999999999999999999999999999999999998774 1 47999999
Q ss_pred EcCCCC--CCCCCCCccccccc----cEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhC-CCcEEEEecCChhhHH
Q 005021 574 LSRQKL--PHLAGTSIDGVEKG----AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG-GKAVRVVSFVSWELFD 646 (719)
Q Consensus 574 l~r~~~--~~~~~~~~~~~~~G----~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~-Gi~v~VId~~~l~pld 646 (719)
+.|.+. |..+.+....+..| .|++.+.. ..|+||+||++|.|+++|++||++|+++ ||+++|||++|+||||
T Consensus 688 l~r~~~~~p~~~~~~~~~~~~gi~kg~y~l~~~~-~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLd 766 (889)
T TIGR03186 688 VTNENYAQPSLPEDRLDAVRRGILKGMYPLDPAA-LAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELA 766 (889)
T ss_pred eCCCCCCCCCcCCCcccchhcchhheeeEeeccC-CCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhH
Confidence 999977 44443311223344 37776311 0168999999999999999999999987 9999999999999999
Q ss_pred HHHHHhhhhhccCCCceEEEEccc---cc-cCchh---------------------hhcCCceEEeeCcCCCCCCHHHHH
Q 005021 647 EQSDAYKESVLPAAVSARVSIEAG---ST-FGWEK---------------------IVGSKGKAIGIDRFGASAPAGKIY 701 (719)
Q Consensus 647 ~~~~~~~~sv~~~~~~~vvvvE~~---~~-~G~~~---------------------~~~~~~~~ig~d~f~~~g~~~el~ 701 (719)
++.+. +.+.+ .++++|++ +. .|++. ++..++.++|+|.|+.+|++++|+
T Consensus 767 rd~i~----a~r~~--~l~t~Eeh~~~~v~ggLg~~~~p~va~~D~~~avae~i~~~~p~~~~~LG~D~FG~Sgtr~~Lr 840 (889)
T TIGR03186 767 RDGRA----AERAQ--RLGDAERPPSPHVAQALGATQGPVIAATDYVRAVPELIRAYVPRRYVTLGTDGFGRSDTRAALR 840 (889)
T ss_pred HHHHH----HHHhC--CcccccccccccHhhhhCCCCCCeeeecchHHHHHHHHHhhCCCCEEEeccCCCCCcCCHHHHH
Confidence 99875 22233 35899997 43 33443 223467789999999999999999
Q ss_pred HHhCCCHHHHHHHHHHhC
Q 005021 702 KEFGITAEAVITAAKEVC 719 (719)
Q Consensus 702 ~~~gl~~e~I~~~i~~~l 719 (719)
++||||++.|+.+++++|
T Consensus 841 ~~fglda~~Iv~aal~~L 858 (889)
T TIGR03186 841 AFFEVDRASIVIAALQAL 858 (889)
T ss_pred HHhCCCHHHHHHHHHHHH
Confidence 999999999999998764
|
Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component. |
| >PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-88 Score=790.24 Aligned_cols=609 Identities=22% Similarity=0.250 Sum_probs=473.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcCC------CCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKANS------GHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~~------GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~ 155 (719)
..+.++.+++++.||++++.||.++++ ||+|+++|+++|+.+||.++||. |++| .+|| ||+|+||.+|++
T Consensus 75 pg~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~-~~~~--~~~D-~V~skGHasp~l 150 (891)
T PRK09405 75 PGDLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRA-PNEP--HGGD-LVFFQGHASPGI 150 (891)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCC-CCCC--CCCC-EEEECchHHHHH
Confidence 556778888999999999999999987 99999999999999999999984 4555 3677 999999999999
Q ss_pred HHHHHHhCCCCCChhHHhhhhhc--CCCCCCCCCCCCCC-CccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCc
Q 005021 156 YALLHLAGYDSVQEDDLKNFRQW--GSKTPGHPENFETP-GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDH 232 (719)
Q Consensus 156 Ya~l~l~G~~~~~~~~l~~~r~~--~~~~~g~p~~~~~p-gi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~ 232 (719)
|+.+++.|++ +.++|++|||. ++.++|||++...| +++++||++|+|++.|+|+|++.||+..+ .-.+..++
T Consensus 151 YA~~~l~G~l--~~e~L~~fR~~~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~---~~~~~~~~ 225 (891)
T PRK09405 151 YARAFLEGRL--TEEQLDNFRQEVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENR---GLKDTSDQ 225 (891)
T ss_pred HHHHHHcCCC--CHHHHHHhcCCCCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCcccccc---ccccCCCc
Confidence 9999999996 99999999997 76778999987766 69999999999999999999999987532 11122579
Q ss_pred EEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh--hcchhHHHHHhccCceEEEE----------
Q 005021 233 YTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIWV---------- 300 (719)
Q Consensus 233 ~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~--~~~~~~~~~~~a~G~~~~~v---------- 300 (719)
+|||++|||||+||++|||+.+|++++|+|||||||+|++++|+++.. ...+++.++|+++||+|++|
T Consensus 226 rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~ 305 (891)
T PRK09405 226 KVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLL 305 (891)
T ss_pred eEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhh
Confidence 999999999999999999999999999999999999999999999964 23689999999999999875
Q ss_pred --------------------------------------------------------------------------------
Q 005021 301 -------------------------------------------------------------------------------- 300 (719)
Q Consensus 301 -------------------------------------------------------------------------------- 300 (719)
T Consensus 306 ~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~~~~ 385 (891)
T PRK09405 306 AKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEHKGQ 385 (891)
T ss_pred ccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhCCCC
Confidence
Q ss_pred ------eeeecCCC-ccccccccccCC-CCCHHHHHHHHHHcCCCCC-------CCCCcHHHHHHHHHHhhcchhHHHHH
Q 005021 301 ------TTTIGFGS-PNKANSYSVHGS-ALGAKEVDATRKNLGWPYE-------PFHVPEDVKKHWSRHVAEGATLEAEW 365 (719)
Q Consensus 301 ------~t~~g~g~-~~~~~~~~~h~~-~l~~~~~~~~~~~l~~~~~-------~~~~~~~v~~~~~~~~~~g~~~~~~~ 365 (719)
+|+||+|. +..+++..+|+. +++.++++.+++.+++|.. |+..|++--..+ .+..+.
T Consensus 386 PtvIia~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~--------~~l~~~ 457 (891)
T PRK09405 386 PTVILAKTIKGYGMGEAGEGKNIAHQVKKLDLDDLKHFRDRFNIPISDEQLEKLPYYKPGEDSPEI--------KYLHER 457 (891)
T ss_pred CEEEEEeceecCCCCcccCCCccccCCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHH--------HHHHHH
Confidence 69999997 777888888984 8899999999999998642 333222100000 011111
Q ss_pred HHHHhhhhhcCchhhhhhhhhhcCCCCCcccccCCCCC---C--CCCcchHHHHHHHHHHHHHhh---CCceEEEecCCC
Q 005021 366 NAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYT---P--ESPAEATRNLSQTCLNALAKT---LPGLLGGSADLA 437 (719)
Q Consensus 366 ~~~~~~~~~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~---~--~~~~~s~r~a~~~~L~~l~~~---dp~iv~~saDl~ 437 (719)
...+..|-+..+.....+ ++|. .+.|. + +....+||.+|+++|.+|++. +++||.+.+|++
T Consensus 458 r~~l~g~~p~r~~~~~~~------~~P~-----~~~~~~~~~~~~~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a 526 (891)
T PRK09405 458 RKALGGYLPARRPKFEPL------EVPA-----LSAFEALLKGSGEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEA 526 (891)
T ss_pred HHHcCCCCCCCCCCCCCC------CCCC-----hhhHHHhhccCCCCcccHHHHHHHHHHHHHhccccCCcEEEeccccc
Confidence 122223322111111100 0121 11221 1 124689999999999999996 899999999998
Q ss_pred CCcccc--cc------------------ccccCcccCCCCCccccccccchHHH--HHHHHHhc--CCCCccEEEehhhh
Q 005021 438 SSNMTL--LK------------------MFGDFQKDTPEERNVRFGVREHGMGA--ICNGIALH--SPGLIPYCATFFVF 493 (719)
Q Consensus 438 ~s~~~~--~~------------------g~~~f~~~~~p~R~~d~GIaE~~~vg--~AaGlA~~--G~~~~Pv~~~y~~F 493 (719)
.++++. ++ .+..|. ++||+|||++||+||+|++ +|+|+|+. |.|++||+++|+.|
T Consensus 527 ~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yk-e~~PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F 605 (891)
T PRK09405 527 RTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYK-ESKDGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMF 605 (891)
T ss_pred cccCcchhhccccccccccccccccccHHHHHHH-HcCCCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHh
Confidence 765541 01 113454 4899999999999999999 99997766 54479999999999
Q ss_pred -HHhHHHHHHHH-hhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCC
Q 005021 494 -TDYMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKR 568 (719)
Q Consensus 494 -~~ra~dqir~~-a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~ 568 (719)
.+|++||||+. |+++.+|+++++++|.+++.+|.|||..+|++++|+||||+||.|+|+.|++.+++.+++ ...+
T Consensus 606 ~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG~qHqdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~ 685 (891)
T PRK09405 606 GFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEGLQHEDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQE 685 (891)
T ss_pred hhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCcccCCchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 67999999986 999999999999999999999999999999999999999999999999999999999875 1244
Q ss_pred --cEEEEEcCCCCCCCCCCCcccccccc--EEEecCCC-CCCCCEEEEEeCHhHHHHHHHHHHHHh-CCCcEEEEecCCh
Q 005021 569 --PSILALSRQKLPHLAGTSIDGVEKGA--YIISDNSS-GNKPDVILIGTGSELEIAAKAAEELRK-GGKAVRVVSFVSW 642 (719)
Q Consensus 569 --P~~irl~r~~~~~~~~~~~~~~~~G~--~~i~~~~~-~~g~dvtIva~G~~v~~al~Aa~~L~~-~Gi~v~VId~~~l 642 (719)
|.|||+...+....+.+....+.+|+ |.+++... ..+.||+||++|.+|++|++||++|++ +||+++|||++|+
T Consensus 686 ~~~yYlrl~ne~~~~~~~pe~~~~~igKg~y~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~Si 765 (891)
T PRK09405 686 NVFYYITVMNENYHQPAMPEGAEEGILKGMYKLETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSF 765 (891)
T ss_pred CeEEEEEeCCCCCCCCCCCcccccccceEEEEeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCC
Confidence 77799863222221111112345555 55543210 012489999999999999999999998 7999999999999
Q ss_pred hhHHHHHHHhhh----------------hhccCCCceEEEEccccc---cCchhhhcCCceEEeeCcCCCCCCHHHHHHH
Q 005021 643 ELFDEQSDAYKE----------------SVLPAAVSARVSIEAGST---FGWEKIVGSKGKAIGIDRFGASAPAGKIYKE 703 (719)
Q Consensus 643 ~pld~~~~~~~~----------------sv~~~~~~~vvvvE~~~~---~G~~~~~~~~~~~ig~d~f~~~g~~~el~~~ 703 (719)
||||++.+.... .++....+.+|++||+.. .-+..++..++.++|+|.|+.+|++++|+++
T Consensus 766 kpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ee~~gG~~Vtv~D~~~aVae~la~~~p~~~~~LGvD~FG~SGt~~~L~~~ 845 (891)
T PRK09405 766 NELARDGQDVERWNMLHPTEEPRVPYVTQVLKGAEGPVVAATDYMKLFAEQIRAFVPGDYVVLGTDGFGRSDTREALRRF 845 (891)
T ss_pred CHhhHHHHHHHHHhhcCcccccccchhhhhhcccCCcEEEecchHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHHHH
Confidence 999999864211 011111133577777742 1123344457788999999999999999999
Q ss_pred hCCCHHHHHHHHHHhC
Q 005021 704 FGITAEAVITAAKEVC 719 (719)
Q Consensus 704 ~gl~~e~I~~~i~~~l 719 (719)
||||++.|+++++++|
T Consensus 846 fglda~~Iv~aal~~L 861 (891)
T PRK09405 846 FEVDAEYVVVAALKAL 861 (891)
T ss_pred hCCCHHHHHHHHHHHH
Confidence 9999999999998764
|
|
| >TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-71 Score=637.23 Aligned_cols=613 Identities=22% Similarity=0.246 Sum_probs=478.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcC------CCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKAN------SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~------~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~ 155 (719)
+.+.++.+++++.||+++++|+.+++ +||+|+++|++||+.+||+++||.+| ++.+|| +|+|+||.+|++
T Consensus 69 pgd~~~e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~adIl~vLy~~~lr~~~---~~~~rD-~VlSKGHasp~l 144 (885)
T TIGR00759 69 PGDLELERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASAATLYEVGFNHFFRGHS---EGGGGD-LVFFQGHAAPGI 144 (885)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHHHHHHHHHHHHhcCCCC---CCCCCC-EEEECCcHHHHH
Confidence 55777888889999999999999999 99999999999999999999999654 456899 599999999999
Q ss_pred HHHHHHhCCCCCChhHHhhhhhc--CCCCCCCCCCCCCC-CccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCc
Q 005021 156 YALLHLAGYDSVQEDDLKNFRQW--GSKTPGHPENFETP-GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDH 232 (719)
Q Consensus 156 Ya~l~l~G~~~~~~~~l~~~r~~--~~~~~g~p~~~~~p-gi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~ 232 (719)
|+.+++.|++ +.++|++|||. ++.++|||++...| +++++||++|+|+++|+|+|++.|++..+++. +..++
T Consensus 145 YA~L~l~G~l--s~e~L~~FRq~~~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~---~~~~~ 219 (885)
T TIGR00759 145 YARAFLEGRL--TEEQLDNFRQEVQGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLK---DTGDQ 219 (885)
T ss_pred HHHHHHcCCC--CHHHHHHhcCCCCCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccC---CCCCc
Confidence 9999999996 99999999995 66677999986666 59999999999999999999999998876532 23689
Q ss_pred EEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhh--cchhHHHHHhccCceEEEE----------
Q 005021 233 YTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA--FTENVDKRFEGLGWHVIWV---------- 300 (719)
Q Consensus 233 ~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~--~~~~~~~~~~a~G~~~~~v---------- 300 (719)
+|||++||||++||++|||+.+|++++|+|||+|||+|++++|+++... ..+++.++|+++||+|++|
T Consensus 220 rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf 299 (885)
T TIGR00759 220 KVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALL 299 (885)
T ss_pred eEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhh
Confidence 9999999999999999999999999999999999999999999999742 3689999999999999976
Q ss_pred --------------------------------------------------------------------------------
Q 005021 301 -------------------------------------------------------------------------------- 300 (719)
Q Consensus 301 -------------------------------------------------------------------------------- 300 (719)
T Consensus 300 ~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~~gr 379 (885)
T TIGR00759 300 ARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEHKGQ 379 (885)
T ss_pred cCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhCCCC
Confidence
Q ss_pred ------eeeecCCCc-cccccccccC-CCCCHHHHHHHHHHcCCCCC-------CCCCcHHHHHHHHHHhhcchhHHHHH
Q 005021 301 ------TTTIGFGSP-NKANSYSVHG-SALGAKEVDATRKNLGWPYE-------PFHVPEDVKKHWSRHVAEGATLEAEW 365 (719)
Q Consensus 301 ------~t~~g~g~~-~~~~~~~~h~-~~l~~~~~~~~~~~l~~~~~-------~~~~~~~v~~~~~~~~~~g~~~~~~~ 365 (719)
+|+||+|.+ ..++...+|+ .+++.++++.+++.+++|.. |+..|++- .. .-.+.++.
T Consensus 380 PTvIlA~TvKG~G~~~~~e~~n~~H~~k~l~~e~l~~~r~~~g~~~~d~~~~~~~~~~~~~~-------s~-e~~y~~~r 451 (885)
T TIGR00759 380 PTVILAKTIKGYGMGDAAESRNTAHQVKKLEVDALKNFRDRFELPLSDAQVEELPYYHPGEG-------SP-EVRYLLAR 451 (885)
T ss_pred CEEEEEeeeecCCCChhhCCCcccccCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCC-------CH-HHHHHHHH
Confidence 799999987 6677889997 58899999999999998654 34333210 00 01122223
Q ss_pred HHHHhhhhhcCchhhhhhhhhhcCCCCCcccccCCCCCC--CCCcchHHHHHHHHHHHHHhhC---CceEEEecCCCCCc
Q 005021 366 NAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTP--ESPAEATRNLSQTCLNALAKTL---PGLLGGSADLASSN 440 (719)
Q Consensus 366 ~~~~~~~~~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~--~~~~~s~r~a~~~~L~~l~~~d---p~iv~~saDl~~s~ 440 (719)
.+.+.+|.+........+ ..|. . ..+..+.+ +....+|..+|++.|..|++.- ++||-+.+|++.+.
T Consensus 452 r~~Lgg~~p~R~~~~~~l------~vP~-l-~~~~~~~~~~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeartf 523 (885)
T TIGR00759 452 RQALGGYLPARRTFAEHL------TVPA-L-EFFGALLKGSGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTF 523 (885)
T ss_pred HHHhCCCCCCcCCCCCCC------CCCC-c-hhhHHHhcCCCCCCccHHHHHHHHHHHHhcCcccccceeecCCCccccC
Confidence 333444432111111000 0121 0 00001111 1245889999999999999752 46999999987554
Q ss_pred ccc--ccccccCcc-----------------cCCCCCccccccccchHHH--HHHHHH--hcCCCCccEEEehhhh-HHh
Q 005021 441 MTL--LKMFGDFQK-----------------DTPEERNVRFGVREHGMGA--ICNGIA--LHSPGLIPYCATFFVF-TDY 496 (719)
Q Consensus 441 ~~~--~~g~~~f~~-----------------~~~p~R~~d~GIaE~~~vg--~AaGlA--~~G~~~~Pv~~~y~~F-~~r 496 (719)
+.. ++.++-|.. +.--+|.++.||+|.++++ +|+|.| .+|.+++||...|+.| .||
T Consensus 524 gm~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFgfqR 603 (885)
T TIGR00759 524 GMEGLFRQIGIYSPHGQTYTPVDADSLLAYKESKDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQR 603 (885)
T ss_pred ChHHhhcccCccCCCCccCCccchhhhhhcccCCCCcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEeeccccccc
Confidence 321 122111211 1224799999999999998 467764 5787899999999999 999
Q ss_pred HHHHHHHHhhhcCCEEEEEecCCC-ccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc---CCCcEEE
Q 005021 497 MRAAIRISALCEAGVIYVMTHDSI-GLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVAN---RKRPSIL 572 (719)
Q Consensus 497 a~dqir~~a~~~~pV~~v~~~~g~-g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~i 572 (719)
..|.+...|.|...-.++++.+|. ++...|-.||...-..+-..+||+.-|-|+.+.|++.++...+++ ....+|.
T Consensus 604 ~gD~~waa~d~~argfl~g~taGrtTL~gEGlqHqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~y 683 (885)
T TIGR00759 604 IGDLCWAAADQRARGFLLGATAGRTTLNGEGLQHEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFY 683 (885)
T ss_pred hHHHHHHHhhhcCCceEeccCCCcccCCCccccCccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 999999999999999999988888 466678899988777788999999999999999999999988864 2457888
Q ss_pred EEcC--CCCCC--CCCCCccccccccEEEecCCCCC-CCCEEEEEeCHhHHHHHHHHHHHHhC-CCcEEEEecCChhhHH
Q 005021 573 ALSR--QKLPH--LAGTSIDGVEKGAYIISDNSSGN-KPDVILIGTGSELEIAAKAAEELRKG-GKAVRVVSFVSWELFD 646 (719)
Q Consensus 573 rl~r--~~~~~--~~~~~~~~~~~G~~~i~~~~~~~-g~dvtIva~G~~v~~al~Aa~~L~~~-Gi~v~VId~~~l~pld 646 (719)
+++- .++++ .++...+.+.+|.|++.+....+ +++|.|+++|+.+.+|++||++|+++ |+.++|++++|..-|.
T Consensus 684 ylt~~ne~~~qp~~p~~~~egIlkG~Y~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~ 763 (885)
T TIGR00759 684 YVTVMNENYVQPPMPEGAEEGILKGLYRFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELA 763 (885)
T ss_pred EEEecCCCCCCCCCCcchHHhHHhCceecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHH
Confidence 8876 33322 22222456889999987642111 35899999999999999999999886 9999999999999998
Q ss_pred HHHH--Hhhhhh--------------ccCCCceEEEEccc---cccCchhhhcCCceEEeeCcCCCCCCHHHHHHHhCCC
Q 005021 647 EQSD--AYKESV--------------LPAAVSARVSIEAG---STFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGIT 707 (719)
Q Consensus 647 ~~~~--~~~~sv--------------~~~~~~~vvvvE~~---~~~G~~~~~~~~~~~ig~d~f~~~g~~~el~~~~gl~ 707 (719)
++.. +..+.+ +....+-+|++-|+ ....+..+++.+...+|.|.|+.|++++.|+++|++|
T Consensus 764 Rd~~~~eR~n~lhP~~~~r~~~v~~~L~~~~gP~va~tDy~~~~~~qir~~vp~~~~~LGtDgFGrSdtr~~lr~~fevD 843 (885)
T TIGR00759 764 RDGHDVERWNLLHPTETPRVSYVAQVLNEADAPVIASTDYVRAFAEQIRPYVPRKYVTLGTDGFGRSDTRENLRHFFEVD 843 (885)
T ss_pred HhHHHHHHHHhcCCCCCccccHHHHHhccCCCCEEEEccchhhhHHHHhhhcCCCceEecCCCCCCCCCHHHHHHHcCCC
Confidence 8843 211111 22222235888887 3456788888788899999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 005021 708 AEAVITAAKEVC 719 (719)
Q Consensus 708 ~e~I~~~i~~~l 719 (719)
++.|+.++.+.|
T Consensus 844 a~~IV~AAL~aL 855 (885)
T TIGR00759 844 AKSVVLAALYAL 855 (885)
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
|
WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. |
| >PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-68 Score=566.38 Aligned_cols=303 Identities=54% Similarity=0.894 Sum_probs=275.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCC
Q 005021 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ 168 (719)
Q Consensus 89 ~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~ 168 (719)
+++|++||.++++|+.++++||+|++||++||+++||..+||+||+||+|++|||||+|+||++|++|+++++.|+ +++
T Consensus 2 ~~~a~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlSkGH~~~~lYa~l~~~G~-~~~ 80 (332)
T PF00456_consen 2 KRIANTIRKLILDMVQKAGSGHPGSSLSAADILYALYFKVLRYDPKNPKWPNRDRFVLSKGHASPALYAILALRGY-DLS 80 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT-BBBTTBTTSTTS-EEEESSGGGHHHHHHHHHHTTS-SS-
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHhhccccCCccccCCCCCcEEEeccchhHHHHHHHHHhcC-CCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999 359
Q ss_pred hhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHH
Q 005021 169 EDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA 248 (719)
Q Consensus 169 ~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~ 248 (719)
.++|++||+.+|.++|||+...+|||+++||+|||||+.|+|||+|.|+++.+||+++++..+++|||++||||++||++
T Consensus 81 ~~~L~~fr~~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~ 160 (332)
T PF00456_consen 81 EEDLKTFRQLGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSV 160 (332)
T ss_dssp HHHHTTTTSTTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHH
T ss_pred HHHHHHhccCCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhh
Confidence 99999999999999999998789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE----------------------------
Q 005021 249 NEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV---------------------------- 300 (719)
Q Consensus 249 ~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v---------------------------- 300 (719)
|||+.+|++++|+|||+|||+|++++|++++....+++.++|++|||+|++|
T Consensus 161 ~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP~~Ii~ 240 (332)
T PF00456_consen 161 WEAASLAGHYKLDNLIVIYDSNGIQIDGPTDIVFSEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKASKGKPTVIIA 240 (332)
T ss_dssp HHHHHHHHHTT-TTEEEEEEEESEETTEEGGGTHHSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHSTSS-EEEEE
T ss_pred HHHHHHHHHhCCCCEEEEEecCCcccCCCcccccchHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhcCCCCceeec
Confidence 9999999999999999999999999999998777889999999999999997
Q ss_pred eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchhh
Q 005021 301 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEA 380 (719)
Q Consensus 301 ~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~ 380 (719)
+|++|+|.++++++..+|+.++++++++.++++++++.++|.+|+|++.+|++...+|...+++|++++.+|++++|+.+
T Consensus 241 ~TvkG~G~~~~e~~~~~Hg~~l~~ee~~~~k~~lg~~~~~F~V~~eV~~~f~~~~~~g~~~~~~W~~~~~~y~~~~P~~a 320 (332)
T PF00456_consen 241 RTVKGKGVPFMEGTAKWHGSPLTEEEVEQAKKELGWDQEPFEVPEEVYDHFRERIAEGAKAEAEWKELFAAYKKKYPEEA 320 (332)
T ss_dssp EE-TTTTSTTTTTSGGGTSS--HHHHHHHHHHHTTSSTSTTCGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred ceEEecCchhhcccchhhccCCcHHHHHHHHHHcCCCCCCcccCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHCHHHH
Confidence 89999999999999999999999999999999999998999999999999998888899999999999999999999999
Q ss_pred hhhhhhhcCCCC
Q 005021 381 AEFKSISSGQLP 392 (719)
Q Consensus 381 ~~~~~~~~g~~p 392 (719)
.++.+.++|++|
T Consensus 321 ~el~~~l~g~lP 332 (332)
T PF00456_consen 321 QELERRLNGELP 332 (332)
T ss_dssp HHHHHHHTT---
T ss_pred HHHHHHHcCCCC
Confidence 999998888776
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A .... |
| >COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=519.67 Aligned_cols=295 Identities=29% Similarity=0.409 Sum_probs=269.0
Q ss_pred cchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEE
Q 005021 408 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYC 487 (719)
Q Consensus 408 ~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~ 487 (719)
..++|+++++.|.++++++++||++++|+.+|+.+ ..|.+ +||+||||+||+||+|+|+|+|||+.|+ +||+
T Consensus 6 ~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~-----~~f~~-~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk--~Pfv 77 (312)
T COG3958 6 TESLRKVYGETLAELGRKNSDIVVLDADLSSSTKT-----GYFAK-EFPDRFFNVGIAEQDMVGTAAGLALAGK--KPFV 77 (312)
T ss_pred chHHHHHHHHHHHHHHhcCCCEEEEecccccccch-----hHHHH-hCchhheecchHHHHHHHHHHHHHhcCC--Ccee
Confidence 36789999999999999999999999999888653 45866 8999999999999999999999999995 9999
Q ss_pred EehhhhHH-hHHHHHHHH-hhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc
Q 005021 488 ATFFVFTD-YMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVAN 565 (719)
Q Consensus 488 ~~y~~F~~-ra~dqir~~-a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~ 565 (719)
++|+.|+. |+|||||+. ||+++||+++++|.|+++|+||+|||++||+++||.+||++|+.|+|+.+++.+++++.+
T Consensus 78 ~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~- 156 (312)
T COG3958 78 STFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQIAD- 156 (312)
T ss_pred echHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHHHHHHh-
Confidence 99999999 999999996 999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhH
Q 005021 566 RKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELF 645 (719)
Q Consensus 566 ~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pl 645 (719)
.+||+|+|+.|...|.+..+..+.|++|++.++++ |.|+|||++|.||++|++||++|+++||+++|||+.|+||+
T Consensus 157 ~~GP~Y~Rl~R~~~p~~~~~~~~~F~iGka~vLrd----G~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPi 232 (312)
T COG3958 157 YKGPVYMRLGRGKVPVVVDEGGYTFEIGKANVLRD----GSDLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPI 232 (312)
T ss_pred cCCCEEEEecCCCCCceecCCCceEeccceeEeec----CCceEEEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCC
Confidence 79999999999998887665557799999999997 89999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCceEEEEccccccC-chhhh--------cCCceEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHH
Q 005021 646 DEQSDAYKESVLPAAVSARVSIEAGSTFG-WEKIV--------GSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAA 715 (719)
Q Consensus 646 d~~~~~~~~sv~~~~~~~vvvvE~~~~~G-~~~~~--------~~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i 715 (719)
|++++. +...+++ .+||+|+|+..| +|+-+ ..++.++|+ |.|+.+|+.++|+++||||+++|++++
T Consensus 233 D~~~i~--~~A~~t~--~IvT~EeHsi~GGlGsaVAEvlse~~p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~~~I~~~v 308 (312)
T COG3958 233 DEQAIL--KAARETG--RIVTAEEHSIIGGLGSAVAEVLSENGPTPMRRIGVPDTFGRSGKADELLDYYGLDPESIAARV 308 (312)
T ss_pred CHHHHH--HHHhhcC--cEEEEecceeecchhHHHHHHHHhcCCcceEEecCCchhccccchHHHHHHhCCCHHHHHHHH
Confidence 999875 2233443 479999999865 66532 136789999 899999999999999999999999999
Q ss_pred HHhC
Q 005021 716 KEVC 719 (719)
Q Consensus 716 ~~~l 719 (719)
++++
T Consensus 309 ~~~~ 312 (312)
T COG3958 309 LELL 312 (312)
T ss_pred HhhC
Confidence 9875
|
|
| >PRK05261 putative phosphoketolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-59 Score=534.20 Aligned_cols=572 Identities=21% Similarity=0.286 Sum_probs=424.5
Q ss_pred HHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCc-EEEeCCCCchHHHHHHHHhC-----CCCCChhH--Hh
Q 005021 102 AVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDR-FVLSAGHGCMLQYALLHLAG-----YDSVQEDD--LK 173 (719)
Q Consensus 102 ~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr-~Ils~GH~~~~~Ya~l~l~G-----~~~~~~~~--l~ 173 (719)
-+...-.||+|++.|..-+.+.|-+..=++ +.|+ +|++.||++|++|+.++|.| |.+++.++ |.
T Consensus 43 ~~K~r~~GHwGt~pgln~vyahln~li~~~--------~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~ 114 (785)
T PRK05261 43 HVKPRLLGHWGTTPGLNFIYAHLNRLIRKY--------DLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMA 114 (785)
T ss_pred HCCcccCCCCCCcHHHHHHHHHHHHHHhhc--------CCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHH
Confidence 344456999999999887766666553333 3465 79999999999999999999 54345555 87
Q ss_pred -hhhhcCCC--CCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhH---
Q 005021 174 -NFRQWGSK--TPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI--- 247 (719)
Q Consensus 174 -~~r~~~~~--~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~--- 247 (719)
.|||+++. ++|||++ ++||++.++|+||+|++.|+|+|++. .+.+|||++||||+++|.
T Consensus 115 ~lfrqfs~pgg~~sH~~~-~tPGi~~~~G~LG~gls~A~G~Al~~--------------~d~iv~~~vGDGE~EeG~lAa 179 (785)
T PRK05261 115 RLFKQFSFPGGIPSHAAP-ETPGSIHEGGELGYSLSHAYGAAFDN--------------PDLIVACVVGDGEAETGPLAT 179 (785)
T ss_pred HHHHhccCCCCcCCCCCC-CCCCeeeCCCchhhHHHHHHHHHHcC--------------CCCEEEEEECcCchhhhhhHH
Confidence 68999866 8899995 89999999999999999999999642 267999999999999999
Q ss_pred HHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh--hcchhHHHHHhccCceEEEE-------------------------
Q 005021 248 ANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIWV------------------------- 300 (719)
Q Consensus 248 ~~EAln~A~~~~L~nli~ivddN~~sis~~~~~--~~~~~~~~~~~a~G~~~~~v------------------------- 300 (719)
.|++.++++..+++||+.|+++|+++|++++.. ...+++.++|++|||+++.|
T Consensus 180 ~W~~~~~~~~~~~g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~ 259 (785)
T PRK05261 180 SWHSNKFLNPATDGAVLPILHLNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRA 259 (785)
T ss_pred HhhhhhhcccccCCCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999974 34588999999999999988
Q ss_pred ---------------------eeeecCCCcc------ccccccccCCCCCHH-HHHHHHHHc-CC--CCCC---CCCcHH
Q 005021 301 ---------------------TTTIGFGSPN------KANSYSVHGSALGAK-EVDATRKNL-GW--PYEP---FHVPED 346 (719)
Q Consensus 301 ---------------------~t~~g~g~~~------~~~~~~~h~~~l~~~-~~~~~~~~l-~~--~~~~---~~~~~~ 346 (719)
+|.||+|.+. .+++...|+.|++.+ +....++.| +| +++| |+.+.+
T Consensus 260 iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g~p~~~dg~~~eGs~raHqvPL~~~~~~~~~~~~L~~wl~sy~p~elF~~~g~ 339 (785)
T PRK05261 260 IQKEAREGGDTTRPRWPMIVLRTPKGWTGPKEVDGKPIEGSWRAHQVPLANVRDNPEHLDLLEDWLRSYRPEELFDEDGR 339 (785)
T ss_pred HHHHHHhCCCCCCCCceEEEEECCccCCCCcccCCcccCCCchhhcCCCCCcccCHHHHHHHHHHhhcCChhhhcCCCCc
Confidence 6789999664 466778999998764 555566666 55 5566 888887
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhhhhhcCchhhhhhhhhhcCCCCCcccc-cCCCCCCC-CCcchHHHHHHHHHHHHHh
Q 005021 347 VKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEK-ALPTYTPE-SPAEATRNLSQTCLNALAK 424 (719)
Q Consensus 347 v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~p~~~~~-~~~~~~~~-~~~~s~r~a~~~~L~~l~~ 424 (719)
++..+.....+|... . ..+|....... ...-.+| +|.. ..+....+ ....+||. +++.|.++++
T Consensus 340 l~~~~~~l~p~g~~r-------~----~~~P~ang~~~-~~~l~lp-~~~~~~~~~~~~g~~~~~atr~-~g~~l~~v~~ 405 (785)
T PRK05261 340 LKPELAALAPKGDRR-------M----GANPHANGGLL-LRDLRLP-DFRDYAVPVGKPGAVMAEATRV-LGKYLRDVIK 405 (785)
T ss_pred hhHHHHHhccCchhh-------h----cCCchhcCCcC-ccccCCC-chHhhcccccCCCccccccHHH-HHHHHHHHHH
Confidence 887777655555411 1 12331110000 0000011 2211 00111111 23467888 9999999999
Q ss_pred hCCc-eEEEecCCCCCcccc--cccc-ccCcc--------cCCCCCccccccccchHHHHHHHHHhcCCCCccEEEehhh
Q 005021 425 TLPG-LLGGSADLASSNMTL--LKMF-GDFQK--------DTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFV 492 (719)
Q Consensus 425 ~dp~-iv~~saDl~~s~~~~--~~g~-~~f~~--------~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~ 492 (719)
.+|+ ++++++|+..|+.+. +..+ ..|.. ...-+|+++ ||+|+.|.|++.|+++.| .++++.+|..
T Consensus 406 ~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~~Grvie-~LsEh~~~g~~~Gy~LtG--~~~~~~sYea 482 (785)
T PRK05261 406 LNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAPDGRVME-VLSEHLCEGWLEGYLLTG--RHGFFSSYEA 482 (785)
T ss_pred hCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCCCCCeee-eecHHHHHHHHHHHHhcC--CCcceecHHH
Confidence 9999 999999998887642 1100 01111 123489999 999999999999999988 5999999999
Q ss_pred hH---HhHHHHH----HHHh---h-hcCC-EEEEEecCCCccCCCCCCCCC---hhhhhHHcCCCCeEEEeeCCHHHHHH
Q 005021 493 FT---DYMRAAI----RISA---L-CEAG-VIYVMTHDSIGLGEDGPTHQP---IEHLASFRAMPNILMLRPADGNETAG 557 (719)
Q Consensus 493 F~---~ra~dqi----r~~a---~-~~~p-V~~v~~~~g~g~g~dG~THq~---~edia~lr~iPnl~V~~P~d~~e~~~ 557 (719)
|+ ++|+.|+ |... . ..++ +.++.|++....|+||+|||. ++.++.+|. |+++||.|+|++|+..
T Consensus 483 F~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn~l~Ts~~~~qghNG~THQ~Pg~ie~l~~~r~-~~~rV~rPaDaNe~la 561 (785)
T PRK05261 483 FIHIVDSMFNQHAKWLKVAREIPWRKPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKP-DVIRVYLPPDANTLLA 561 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCcceeEEeecceeecCCCCCCCCCchHHHHHHhcCC-CcceEEeCCCHHHHHH
Confidence 99 8999997 6431 1 1122 347888999999999999999 999999999 9999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEcCCCCCCCCCCC--ccccccccEEEecCC--CCCCCCEEEEEeCHhHHH-HHHHHHHHHhC--
Q 005021 558 AYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNS--SGNKPDVILIGTGSELEI-AAKAAEELRKG-- 630 (719)
Q Consensus 558 ~l~~a~~~~~~P~~irl~r~~~~~~~~~~--~~~~~~G~~~i~~~~--~~~g~dvtIva~G~~v~~-al~Aa~~L~~~-- 630 (719)
+++.|+++.++|++|.++|+++|++...+ ...+..|+|++...+ .++.+||+|+++|+++.. |++|+++|+++
T Consensus 562 a~~~al~s~~~p~~IvlsRQ~lp~~~~~~~a~~~~~kGayi~~~a~~~~~~~pDvvL~atGsev~leAlaAa~~L~~~~p 641 (785)
T PRK05261 562 VADHCLRSRNYINVIVAGKQPRPQWLSMDEARKHCTKGLGIWDWASNDDGEEPDVVLACAGDVPTLETLAAADLLREHFP 641 (785)
T ss_pred HHHHHHHhCCCCEEEEEeCCCCcccCChHHHHHhccCceEEEEeccCCCCCCCCEEEEEeCcHhhHHHHHHHHHHHhhCC
Confidence 99999988899999999999999865432 356889999987321 112479999999999987 99999999999
Q ss_pred CCcEEEEecCChhhHHHHHHHhh---------hhhccCCCceEEEEccccccCchhhh----c-CCceEEeeCcCCCCCC
Q 005021 631 GKAVRVVSFVSWELFDEQSDAYK---------ESVLPAAVSARVSIEAGSTFGWEKIV----G-SKGKAIGIDRFGASAP 696 (719)
Q Consensus 631 Gi~v~VId~~~l~pld~~~~~~~---------~sv~~~~~~~vvvvE~~~~~G~~~~~----~-~~~~~ig~d~f~~~g~ 696 (719)
|++++||++ +++|+.+...|. +.++...+.+++...-+ ..-+-+.+ . .+....|..+=+..-+
T Consensus 642 gikvRVVSv--~dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~~hgy-p~~i~~l~~~r~~~~~~~v~gy~e~g~ttt 718 (785)
T PRK05261 642 DLKIRVVNV--VDLMKLQPPSEHPHGLSDREFDALFTTDKPVIFAFHGY-PWLIHRLTYRRTNHHNFHVRGYKEEGTTTT 718 (785)
T ss_pred CCCEEEEEe--chhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEEeCCC-HHHHHHHhccCCCCCccEEEEEecCCCCCC
Confidence 999999999 478877753221 23344444422221111 11111111 1 2345567755566667
Q ss_pred HHHHHHHhCCCHHHHHHHHHH
Q 005021 697 AGKIYKEFGITAEAVITAAKE 717 (719)
Q Consensus 697 ~~el~~~~gl~~e~I~~~i~~ 717 (719)
+-+++-..++|.-.++..+.+
T Consensus 719 p~dm~~~N~~~r~~l~~~a~~ 739 (785)
T PRK05261 719 PFDMVVLNELDRFHLAIDAID 739 (785)
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 889999999999998887654
|
|
| >COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-54 Score=424.28 Aligned_cols=204 Identities=43% Similarity=0.679 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCC
Q 005021 85 AALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGY 164 (719)
Q Consensus 85 ~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~ 164 (719)
...|.++|.+||+.+++|+..++.||+|++||++||+++||++.|+++|++|.|++|||||||+||++|++|++++..|+
T Consensus 7 ~~~L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~G~ 86 (243)
T COG3959 7 VDELERIAREIRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEKGY 86 (243)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEecccchHHHHHHHHHcCC
Confidence 33499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccC
Q 005021 165 DSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 244 (719)
Q Consensus 165 ~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~ 244 (719)
+ ++|+|.+|++.+|++||||++..+||++++||+||||||+|+|||++.|+++ .+.+|||++||||++
T Consensus 87 ~--p~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~----------~~~~VyvilGDGEl~ 154 (243)
T COG3959 87 F--PEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKG----------SPYRVYVILGDGELD 154 (243)
T ss_pred C--CHHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcC----------CCceEEEEecCcccc
Confidence 7 9999999999999999999998899999999999999999999999999987 478999999999999
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchh-hhcchhHHHHHhccCceEEEE
Q 005021 245 EGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE-IAFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 245 eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~-~~~~~~~~~~~~a~G~~~~~v 300 (719)
||++|||++.|++++|+|||.|+|.|+.|+|+.+. ++..+++.++|++|||+|++|
T Consensus 155 EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~ev 211 (243)
T COG3959 155 EGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEV 211 (243)
T ss_pred cccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEE
Confidence 99999999999999999999999999999999996 466789999999999999997
|
|
| >COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-51 Score=447.70 Aligned_cols=614 Identities=23% Similarity=0.265 Sum_probs=456.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcC------CCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKAN------SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~------~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~ 155 (719)
+-+.++=.++-.-||+.++-||-+++ |||++|..|++.|+.++|.+++| +++... +.|++.+ .||.+|++
T Consensus 72 pgd~~lErrir~~irWna~a~vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr--~~~~~~-ggDlV~~-qgHaSPg~ 147 (887)
T COG2609 72 PGDLELERRIRSLIRWNAHAMVLRASKKGLELGGHIASFASSATLYEVGFNHFFR--AKSEKD-GGDLVFF-QGHASPGI 147 (887)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHccCCCCCccchhhhhhhHHHHHHHHHHHHhc--CcCCCC-CCceEEE-ecCCCchH
Confidence 44455445677889999999887754 99999999999999999999877 332222 5676555 89999999
Q ss_pred HHHHHHhCCCCCChhHHhhhhhcCC--CCCCCCCCCCCC-CccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCc
Q 005021 156 YALLHLAGYDSVQEDDLKNFRQWGS--KTPGHPENFETP-GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDH 232 (719)
Q Consensus 156 Ya~l~l~G~~~~~~~~l~~~r~~~~--~~~g~p~~~~~p-gi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~ 232 (719)
||..+|.|+. ++|+|++|||..+ -.+++|++...| .+.|+|+++|-|..+|+-.|.-.||+..|.-+ +..+.
T Consensus 148 yArafLeGRl--seeqLdnFRqev~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~---~~~~~ 222 (887)
T COG2609 148 YARAFLEGRL--TEEQLDNFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLK---DTSDQ 222 (887)
T ss_pred HHHHHHhccc--cHHHHHHHHHhccCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCc---CCCCC
Confidence 9999999996 9999999998755 233788886654 88999999999999999999999999876322 23689
Q ss_pred EEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh--hcchhHHHHHhccCceEEEE----------
Q 005021 233 YTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIWV---------- 300 (719)
Q Consensus 233 ~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~--~~~~~~~~~~~a~G~~~~~v---------- 300 (719)
+|||++|||||.|+.+.+|+..|+..+|+|+|||+|.|.+++|+++.. -...++...|++.||+|++|
T Consensus 223 ~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll 302 (887)
T COG2609 223 KVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELL 302 (887)
T ss_pred eEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEecccHHHHh
Confidence 999999999999999999999999999999999999999999999953 24567899999999999999
Q ss_pred --------------------------------------------------------------------------------
Q 005021 301 -------------------------------------------------------------------------------- 300 (719)
Q Consensus 301 -------------------------------------------------------------------------------- 300 (719)
T Consensus 303 ~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki~aA~~~A~~~kg~ 382 (887)
T COG2609 303 AKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKKAQEHKGR 382 (887)
T ss_pred cccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHHHHHHHHHhcCCCC
Confidence
Q ss_pred ------eeeecCCCc-cccccccccCC-CCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcch---hHHHHHHHHH
Q 005021 301 ------TTTIGFGSP-NKANSYSVHGS-ALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGA---TLEAEWNAKF 369 (719)
Q Consensus 301 ------~t~~g~g~~-~~~~~~~~h~~-~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~---~~~~~~~~~~ 369 (719)
+|+||+|.. ..+.....|.. .++.+.++.+++.+++|...-++.+ + ..+ +...+. .+.+...+++
T Consensus 383 PtvilA~TIKGyglg~~~eg~n~aHq~kkm~~~~l~~~Rdr~~ipvsd~e~e~-l-py~--~~g~~s~E~~yl~~rr~al 458 (887)
T COG2609 383 PTVILAKTIKGYGLGEAAEGKNIAHQVKKMTPDQLKEFRDRFGIPVSDAELEE-L-PYY--HFGEDSPEYKYLHARRAAL 458 (887)
T ss_pred ceEEEEeeeccccCchhhcccchhhhhhcCCHHHHHHHHhhcCCCCchhhhhc-C-CcC--CCCCCcHHHHHHHHHHHhc
Confidence 789999965 33445566765 6788899999999988632211100 0 000 001110 1222223333
Q ss_pred hhhhhcCchhhhhhhhhhcCCCCCcccccCCCC----CCCCCcchHHHHHHHHHHHHHhhC---CceEEEecCCCCCccc
Q 005021 370 AEYEKKYPEEAAEFKSISSGQLPAGWEKALPTY----TPESPAEATRNLSQTCLNALAKTL---PGLLGGSADLASSNMT 442 (719)
Q Consensus 370 ~~~~~~~p~~~~~~~~~~~g~~p~~~~~~~~~~----~~~~~~~s~r~a~~~~L~~l~~~d---p~iv~~saDl~~s~~~ 442 (719)
..|.+.. ... ++..+|-. .+.+| .......+|..+|...|.+++++. ++||-+.+|.+.+.+.
T Consensus 459 ~g~~p~r---r~~----~t~~l~vP---~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDearTfgm 528 (887)
T COG2609 459 GGYLPAR---RPK----FTPALPVP---SLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEARTFGM 528 (887)
T ss_pred CCCCchh---ccc----CCCCccCC---cHHHHHHHHhccCccchhHHHHHHHHHHHHhccccCCccccccCchhhhccc
Confidence 3332211 000 11111100 00011 111224889999999999999843 4799999998754332
Q ss_pred c--cccccc-------Ccc----------cCCCCCccccccccchHHH--HHHHHH--hcCCCCccEEEehhhh-HHhHH
Q 005021 443 L--LKMFGD-------FQK----------DTPEERNVRFGVREHGMGA--ICNGIA--LHSPGLIPYCATFFVF-TDYMR 498 (719)
Q Consensus 443 ~--~~g~~~-------f~~----------~~~p~R~~d~GIaE~~~vg--~AaGlA--~~G~~~~Pv~~~y~~F-~~ra~ 498 (719)
. +..++- |.. +.-.++.++.||+|.++++ +|+|.+ .+|.+|+||..-|+.| +||.-
T Consensus 529 eg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~YsmFgfqRig 608 (887)
T COG2609 529 EGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIYYSMFGFQRIG 608 (887)
T ss_pred hhhhhhcccccCCCccCCccchhhhhhhhhCCCcchHHhhhccccHHHHHHHHhcccccCCccceeeeeeechhhhhhHH
Confidence 1 111111 211 1224799999999999998 477775 5687899999999999 89999
Q ss_pred HHHHHHhhhcCC-EEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcC------CCcEE
Q 005021 499 AAIRISALCEAG-VIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANR------KRPSI 571 (719)
Q Consensus 499 dqir~~a~~~~p-V~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~------~~P~~ 571 (719)
|.+..+|.|... .++.+|.+|.++-..|-.|+...-.-+-..+||+.-|-|+.+.|++-++...+++. +.-.|
T Consensus 609 D~~waA~dq~ARgFLlgaTagrtTLngEGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~v~yY 688 (887)
T COG2609 609 DLLWAAGDQDARGFLLGATAGRTTLNGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYY 688 (887)
T ss_pred HHHHHHHhhhhcceeEeecCCCceeCccccccccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhccCcCCcEEE
Confidence 999999999988 77777877777766788898766545667899999999999999999999988653 33478
Q ss_pred EEEcCCCCCC--CCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHh-CCCcEEEEecCChhhHHHH
Q 005021 572 LALSRQKLPH--LAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRK-GGKAVRVVSFVSWELFDEQ 648 (719)
Q Consensus 572 irl~r~~~~~--~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~-~Gi~v~VId~~~l~pld~~ 648 (719)
|++...++++ .+....+.+.+|.|.+......++..+.|++.|..+.+|++|++.|++ .|+.+.|.+++|..-|.++
T Consensus 689 lt~~ne~~~qPamp~gae~gI~kG~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~rd 768 (887)
T COG2609 689 ITLSNENYPQPAMPEGAEEGIIKGIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELARD 768 (887)
T ss_pred EEeccCcCCCCCCCCcchhhhhhceeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecccHHHHhcc
Confidence 8887766654 233334678899999877532125789999999999999999999987 6999999999999888765
Q ss_pred H----------------HHhhhhhccCCCceEEEEccccccC---chhhhcCCceEEeeCcCCCCCCHHHHHHHhCCCHH
Q 005021 649 S----------------DAYKESVLPAAVSARVSIEAGSTFG---WEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAE 709 (719)
Q Consensus 649 ~----------------~~~~~sv~~~~~~~vvvvE~~~~~G---~~~~~~~~~~~ig~d~f~~~g~~~el~~~~gl~~e 709 (719)
. +.|...+++.+.. +|++-|..... +..+++.+...+|.|.|+.|++++.|+++|.+|++
T Consensus 769 g~a~~R~n~lhP~~~~~v~yv~~~L~~~~p-~Va~tDy~~~~a~qir~~vp~~y~vLGtdgFGrSdsr~~Lr~~fevDa~ 847 (887)
T COG2609 769 GQAAERWNLLHPTETPRVPYVAQVLNADGP-VVAVTDYMKLFAEQIRAVVPQRYRVLGTDGFGRSDSRENLRRFFEVDAY 847 (887)
T ss_pred hHHHHHHHhcCCCCCCCchHHHHHhccCCC-eEEechhhHhHHHHHhcccCCeeEEeccCCCCccCcHHHHHHHhccchH
Confidence 3 2334445554444 47887776543 45667666778999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 005021 710 AVITAAKEVC 719 (719)
Q Consensus 710 ~I~~~i~~~l 719 (719)
.|+-++...|
T Consensus 848 ~vv~Aal~~L 857 (887)
T COG2609 848 YVVVAALSAL 857 (887)
T ss_pred HHHHHHHHHH
Confidence 9998887643
|
|
| >CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-52 Score=446.16 Aligned_cols=290 Identities=13% Similarity=0.105 Sum_probs=239.3
Q ss_pred chHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCC-CccccccccchHHHHHHHHHhcCCCCccEE
Q 005021 409 EATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE-RNVRFGVREHGMGAICNGIALHSPGLIPYC 487 (719)
Q Consensus 409 ~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~-R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~ 487 (719)
.++|++++++|.+++++||+++++++|++.++.. ...+++|++ +||+ ||||+||+||+|||+|+|||+.| ++||+
T Consensus 4 ~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~-~~~~~~f~~-~fp~~R~~n~gIaEq~~vg~AaGlA~~G--~~pvv 79 (327)
T CHL00144 4 VFLFEALREAIDEEMARDPRVFVIGEDVGHYGGS-YKVTKGLHE-KYGDLRVLDTPIAENSFTGMAIGAAMTG--LRPIV 79 (327)
T ss_pred chHHHHHHHHHHHHHhhCCCEEEEeCcccccCCc-hhHHHHHHH-HCCCccEeeccccHHHHHHHHHHHHHCC--CEEEE
Confidence 5789999999999999999999999999643221 122456876 8999 99999999999999999999999 69999
Q ss_pred E-ehhhhHHhHHHHHHHH-hhh--------cCCEEEEEecCCCccCCCCCCC-CChhhhhHHcCCCCeEEEeeCCHHHHH
Q 005021 488 A-TFFVFTDYMRAAIRIS-ALC--------EAGVIYVMTHDSIGLGEDGPTH-QPIEHLASFRAMPNILMLRPADGNETA 556 (719)
Q Consensus 488 ~-~y~~F~~ra~dqir~~-a~~--------~~pV~~v~~~~g~g~g~dG~TH-q~~edia~lr~iPnl~V~~P~d~~e~~ 556 (719)
+ +|+.|++|+||||++. |++ ++||+++. .|..++.+|+|| |++| ++||+||||+|++|+|+.|++
T Consensus 80 ~~~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~--~g~~~~~~G~tHs~~~e--a~~~~iPgl~V~~Psd~~d~~ 155 (327)
T CHL00144 80 EGMNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRG--PGGVGRQLGAEHSQRLE--SYFQSVPGLQIVACSTPYNAK 155 (327)
T ss_pred EeehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEe--cCCCCCCCCccccccHH--HHHhcCCCCEEEEeCCHHHHH
Confidence 7 6778899999999875 776 56666664 666566799999 6664 999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCC---CCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCc
Q 005021 557 GAYKVAVANRKRPSILALSRQKL---PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA 633 (719)
Q Consensus 557 ~~l~~a~~~~~~P~~irl~r~~~---~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~ 633 (719)
.+++++++ .++|+|||++|.-. +.++.+ .+.+++|++.++++ |.|+|||+||.|+++|++|++.|+++||+
T Consensus 156 ~~l~~a~~-~~~Pv~ire~~~l~~~~~~v~~~-~~~~~~Gk~~v~~~----G~ditiia~G~~v~~al~Aa~~L~~~Gi~ 229 (327)
T CHL00144 156 GLLKSAIR-SNNPVIFFEHVLLYNLKEEIPDN-EYLLPLEKAEVVRP----GNDITILTYSRMRHHVLQAVKVLVEKGYD 229 (327)
T ss_pred HHHHHHHh-CCCcEEEEEcHHhcCCCCCCCCC-CccccCCeeEEEEc----CCCEEEEEccHHHHHHHHHHHHHHhcCCC
Confidence 99999996 68999998433222 223332 34678999999987 79999999999999999999999999999
Q ss_pred EEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcccccc-Cchhh------------hcCCceEEee-CcCCC-CCCHH
Q 005021 634 VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKI------------VGSKGKAIGI-DRFGA-SAPAG 698 (719)
Q Consensus 634 v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~-G~~~~------------~~~~~~~ig~-d~f~~-~g~~~ 698 (719)
++|||++|++|||++++. +++.+++. +||+||+... |+++. +..++.++|+ |.|++ +|+.+
T Consensus 230 ~~VId~~~ikPlD~~~i~--~~~~~t~~--vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~~~~~~~ 305 (327)
T CHL00144 230 PEIIDLISLKPLDLGTIS--KSVKKTHK--VLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYNGPLE 305 (327)
T ss_pred EEEEecCcCCCCCHHHHH--HHHHhhCc--EEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCCCCccHH
Confidence 999999999999999875 56666653 6999999875 56542 2346788999 78887 56555
Q ss_pred HHHHHhCCCHHHHHHHHHHhC
Q 005021 699 KIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 699 el~~~~gl~~e~I~~~i~~~l 719 (719)
+ .+|||+++|+++|++++
T Consensus 306 ~---~~gl~~~~I~~~i~~~l 323 (327)
T CHL00144 306 E---ATVIQPAQIIEAVEQII 323 (327)
T ss_pred H---HhCCCHHHHHHHHHHHH
Confidence 4 45999999999998864
|
|
| >PRK11892 pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-51 Score=453.96 Aligned_cols=290 Identities=19% Similarity=0.219 Sum_probs=245.3
Q ss_pred cchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCccE
Q 005021 408 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPY 486 (719)
Q Consensus 408 ~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv 486 (719)
.+++|++++++|.+++++||+++++++|++.+... ++-+..|.+ +| |+||||+||+||+|+|+|+|||+.| ++||
T Consensus 141 ~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga-~~~t~~l~~-~fgp~R~id~gIaEq~~vg~AaGlA~~G--~rPi 216 (464)
T PRK11892 141 TMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGA-YKVTQGLLQ-EFGARRVIDTPITEHGFAGIGVGAAFAG--LKPI 216 (464)
T ss_pred chHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCc-cccchHHHH-HhCccceeecCccHHHHHHHHHHHHhCC--CEEE
Confidence 46789999999999999999999999999644321 111244655 79 9999999999999999999999999 6999
Q ss_pred EEe-hhhhHHhHHHHHHHH-h--------hhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHH
Q 005021 487 CAT-FFVFTDYMRAAIRIS-A--------LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETA 556 (719)
Q Consensus 487 ~~~-y~~F~~ra~dqir~~-a--------~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~ 556 (719)
+++ +++|++|+||||++. | ++++||+|++.+.+. .+ .|+ ||+++|+++||+||||+|++|+|+.|++
T Consensus 217 v~~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~-~~-~G~-hhs~~d~a~~~~iPgl~V~~P~d~~d~~ 293 (464)
T PRK11892 217 VEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAA-AR-VAA-QHSQDYAAWYSHIPGLKVVAPYSAADAK 293 (464)
T ss_pred EEEehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCC-CC-CCC-ccccCHHHHHhhCCCCEEEEeCCHHHHH
Confidence 976 578899999999874 7 899999999854433 23 777 9999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEE-----EEcCC-CCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhC
Q 005021 557 GAYKVAVANRKRPSIL-----ALSRQ-KLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG 630 (719)
Q Consensus 557 ~~l~~a~~~~~~P~~i-----rl~r~-~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~ 630 (719)
++|+++++ .++|+|| ||+|+ .+|.+ +.+.+++|+++++++ |.|+|||++|.+++.|++|+++|+++
T Consensus 294 ~ll~~ai~-~~~Pv~ile~~~ry~~~~~vp~~---~~~~~~~Gka~v~r~----G~DvtIva~G~~v~~Al~Aa~~L~~~ 365 (464)
T PRK11892 294 GLLKAAIR-DPNPVIFLENEILYGQSFDVPKL---DDFVLPIGKARIHRE----GKDVTIVSFSIGMTYALKAAEELAKE 365 (464)
T ss_pred HHHHHHhh-CCCcEEEEechhhcCCCCCCCCc---CCccccCceEEEEEc----CCCEEEEEccHHHHHHHHHHHHHHhc
Confidence 99999996 6899999 67775 34433 124578999999987 79999999999999999999999999
Q ss_pred CCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcccccc-Cchhh------------hcCCceEEee-CcCCCCCC
Q 005021 631 GKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKI------------VGSKGKAIGI-DRFGASAP 696 (719)
Q Consensus 631 Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~-G~~~~------------~~~~~~~ig~-d~f~~~g~ 696 (719)
||+++|||++|++|||.+++. +++.+++. +||+||++.. |+++. +..++.++|+ |.|.+
T Consensus 366 GI~~~VIdl~tlkPlD~~~i~--~sv~kt~~--vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~--- 438 (464)
T PRK11892 366 GIDAEVIDLRTIRPMDTETIV--ESVKKTNR--LVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMP--- 438 (464)
T ss_pred CCCEEEEECCCCCcCCHHHHH--HHHHhcCe--EEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCC---
Confidence 999999999999999999875 57777763 6999999875 46542 2346788999 77764
Q ss_pred HHHHHHHhCC-CHHHHHHHHHHhC
Q 005021 697 AGKIYKEFGI-TAEAVITAAKEVC 719 (719)
Q Consensus 697 ~~el~~~~gl-~~e~I~~~i~~~l 719 (719)
++.++++++| +++.|+++|++++
T Consensus 439 ~~~~le~~~l~~~~~Iv~av~~~~ 462 (464)
T PRK11892 439 YAANLEKLALPSVAEVVEAVKAVC 462 (464)
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHh
Confidence 6789999998 9999999999864
|
|
| >PRK09212 pyruvate dehydrogenase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-51 Score=439.01 Aligned_cols=293 Identities=18% Similarity=0.213 Sum_probs=241.1
Q ss_pred chHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCccEE
Q 005021 409 EATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPYC 487 (719)
Q Consensus 409 ~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~ 487 (719)
.++|++++++|.+++++||+++++++|++.++.. +.-+..|++ +| |+||||+|||||+|||+|+|||+.| ++||+
T Consensus 4 ~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~-~~~~~~~~~-~fgp~R~~d~gIaE~~~vg~AaGlA~~G--~~Piv 79 (327)
T PRK09212 4 LTVREALRDAMQEEMERDPKVFLMGEEVGEYQGA-YKVTQGLLE-QFGPKRVIDTPITEHGFAGLAVGAAFAG--LRPIV 79 (327)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEcCcccccCCc-chhhHHHHH-HhCCCceeecchhHHHHHHHHHHHHHcC--CeeEE
Confidence 5789999999999999999999999999644321 111245766 89 9999999999999999999999999 69999
Q ss_pred Eehh-hhHHhHHHHHHH-Hhhhc------CCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHH
Q 005021 488 ATFF-VFTDYMRAAIRI-SALCE------AGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAY 559 (719)
Q Consensus 488 ~~y~-~F~~ra~dqir~-~a~~~------~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l 559 (719)
++|+ +|++|+||||++ +|+++ +||.+++.+++..++.+|+|||...+ ++||+||||+|++|+|+.|++.+|
T Consensus 80 ~~~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~~e-a~~r~iP~l~V~~P~d~~e~~~~l 158 (327)
T PRK09212 80 EFMTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQCYA-AWYSHIPGLKVVAPYFAADCKGLL 158 (327)
T ss_pred EeehhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccCHH-HHHhcCCCCEEEeeCCHHHHHHHH
Confidence 9887 789999999876 48874 45444444577668899999944444 999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEEcCCCCC---CCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEE
Q 005021 560 KVAVANRKRPSILALSRQKLP---HLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRV 636 (719)
Q Consensus 560 ~~a~~~~~~P~~irl~r~~~~---~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~V 636 (719)
++|++ .++|+|||++|..++ .++. ..+.+++|+++++++ |.|++||+||+++..|++|++.|+++|++++|
T Consensus 159 ~~a~~-~~~Pv~i~~~~~~~~~~~~~~~-~~~~~~~Gk~~vl~~----G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~v 232 (327)
T PRK09212 159 KTAIR-DPNPVIFLENEILYGHSHEVPE-EEESIPIGKAAILRE----GSDVTIVTFSIQVKLALEAAELLEKEGISVEV 232 (327)
T ss_pred HHHHh-CCCcEEEEEchhhcCCCCCCCC-CCccccCCeeEEEEe----CCCEEEEEccHHHHHHHHHHHHHHhcCCcEEE
Confidence 99996 599999987765443 2222 234688999999887 79999999999999999999999999999999
Q ss_pred EecCChhhHHHHHHHhhhhhccCCCceEEEEcccccc-Cchhh------------hcCCceEEee-CcCCCCCCHHHHHH
Q 005021 637 VSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKI------------VGSKGKAIGI-DRFGASAPAGKIYK 702 (719)
Q Consensus 637 Id~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~-G~~~~------------~~~~~~~ig~-d~f~~~g~~~el~~ 702 (719)
||+++++|||++.+. +.+.+++ .+|++|++... |+++. ...++.+++. |.|++.| ++++
T Consensus 233 i~~~~l~Pld~~~i~--~~~~~~~--~vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~---~~le 305 (327)
T PRK09212 233 IDLRTLRPLDTETII--ESVKKTN--RLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYA---ANLE 305 (327)
T ss_pred EEEecCCCCCHHHHH--HHHHhCC--eEEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCch---HHHH
Confidence 999999999998764 3444444 36999999875 45432 1235678888 7887765 8999
Q ss_pred HhCC-CHHHHHHHHHHhC
Q 005021 703 EFGI-TAEAVITAAKEVC 719 (719)
Q Consensus 703 ~~gl-~~e~I~~~i~~~l 719 (719)
++|| ++++|+++|++++
T Consensus 306 ~~~l~~~~~I~~~i~~~~ 323 (327)
T PRK09212 306 KLALPSEEDIIEAVKKVC 323 (327)
T ss_pred HhcCCCHHHHHHHHHHHH
Confidence 9998 9999999999864
|
|
| >PLN02683 pyruvate dehydrogenase E1 component subunit beta | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=439.51 Aligned_cols=302 Identities=20% Similarity=0.240 Sum_probs=243.1
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccccccchHHHHHHHHHhc
Q 005021 400 PTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALH 479 (719)
Q Consensus 400 ~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~ 479 (719)
+.|..+..+.++|++++++|.+++++||+++++++|++.++.. +..+..|.++.+|+||||+|||||+|||+|+|||+.
T Consensus 18 ~~~~~~~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~-~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~ 96 (356)
T PLN02683 18 RGYASAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGA-YKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYA 96 (356)
T ss_pred cccCccccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCc-cchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHC
Confidence 3444444567899999999999999999999999998654321 111233545234999999999999999999999999
Q ss_pred CCCCccEEEe-hhhhHHhHHHHHHHH-hhhc--------CCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEee
Q 005021 480 SPGLIPYCAT-FFVFTDYMRAAIRIS-ALCE--------AGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRP 549 (719)
Q Consensus 480 G~~~~Pv~~~-y~~F~~ra~dqir~~-a~~~--------~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P 549 (719)
| ++||+++ |++|++|+||||++. |+++ +||+|++.+ |.++| +|+|||..+ +++||+||||+|++|
T Consensus 97 G--~~P~v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g-~G~tH~~~~-~a~lr~iPnl~V~~P 171 (356)
T PLN02683 97 G--LKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAG-VGAQHSQCF-AAWYSSVPGLKVLAP 171 (356)
T ss_pred C--CEEEEEEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCC-CCCccccCH-HHHHhcCCCCEEEEe
Confidence 9 6999987 578899999999864 8887 999999854 65567 599998887 699999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEEcC----CCCCCCCC--CCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHH
Q 005021 550 ADGNETAGAYKVAVANRKRPSILALSR----QKLPHLAG--TSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKA 623 (719)
Q Consensus 550 ~d~~e~~~~l~~a~~~~~~P~~irl~r----~~~~~~~~--~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~A 623 (719)
+|+.|++.+++++++ .++|+|||+++ +..|.... ...+.+++|+++++++ |+|++||++|+|+++|++|
T Consensus 172 ad~~e~~~~l~~a~~-~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~----G~dvtIia~G~~v~~Al~A 246 (356)
T PLN02683 172 YSSEDARGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIERE----GKDVTIVAFSKMVGYALKA 246 (356)
T ss_pred CCHHHHHHHHHHHHh-CCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEc----CCCEEEEEccHHHHHHHHH
Confidence 999999999999996 68999999643 22221111 1124578899999987 7899999999999999999
Q ss_pred HHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcccccc-Cchhh------------hcCCceEEee-C
Q 005021 624 AEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKI------------VGSKGKAIGI-D 689 (719)
Q Consensus 624 a~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~-G~~~~------------~~~~~~~ig~-d 689 (719)
++.|+++||+++|||++|++|||++++. +++.+++ .+||+||+... |+|+. ...++.++|+ |
T Consensus 247 a~~L~~~GI~v~VId~~~ikPlD~~~l~--~~~~~t~--~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d 322 (356)
T PLN02683 247 AEILAKEGISAEVINLRSIRPLDRDTIN--ASVRKTN--RLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGAD 322 (356)
T ss_pred HHHHHhcCCCEEEEECCCCCccCHHHHH--HHHhhcC--eEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCC
Confidence 9999999999999999999999999875 4555555 36999999875 56542 1236778999 5
Q ss_pred cCCCCCCHHHHHHHhCC-CHHHHHHHHHHhC
Q 005021 690 RFGASAPAGKIYKEFGI-TAEAVITAAKEVC 719 (719)
Q Consensus 690 ~f~~~g~~~el~~~~gl-~~e~I~~~i~~~l 719 (719)
.+ .+...+++++++ ++++|+++|++++
T Consensus 323 ~~---~p~~~~le~~~~p~~~~i~~a~~~~~ 350 (356)
T PLN02683 323 VP---MPYAANLERLALPQVEDIVRAAKRAC 350 (356)
T ss_pred cC---CCccHHHHHhhCCCHHHHHHHHHHHH
Confidence 54 345567777777 9999999999874
|
|
| >cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=432.65 Aligned_cols=243 Identities=27% Similarity=0.312 Sum_probs=221.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC------CCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHH
Q 005021 86 ALVEKSVNTIRFLAVDAVEKANS------GHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALL 159 (719)
Q Consensus 86 ~~l~~la~~iR~~~~~~v~~~~~------GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l 159 (719)
|+-+++.+.||+++++|+.++++ ||+|++||++||+++||+.+|++|| +|++||| |+|+||++|++|+++
T Consensus 2 ~i~~~~~~~iR~~i~~mv~~a~s~~~~~gGH~G~slS~adI~~aLy~~~l~~~p---~~~~RDR-vlSkGHas~~lYA~L 77 (386)
T cd02017 2 EIERRIRSLIRWNAMAMVHRANKKDLGIGGHIATFASAATLYEVGFNHFFRARG---EGGGGDL-VYFQGHASPGIYARA 77 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCcccCCCCCcchhHHHHHHHHHHHhcCCCC---CCCCCCE-EEeCCcccHHHHHHH
Confidence 45578899999999999999887 9999999999999999999999887 5999999 889999999999999
Q ss_pred HHhCCCCCChhHHhhhhhcCC--CCCCCCCCCCCC-CccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEE
Q 005021 160 HLAGYDSVQEDDLKNFRQWGS--KTPGHPENFETP-GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYV 236 (719)
Q Consensus 160 ~l~G~~~~~~~~l~~~r~~~~--~~~g~p~~~~~p-gi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~ 236 (719)
+++|++ +.++|++|||.+| .++|||++..+| +++++||++|||+++|+|||+|.|+++++|++.+ .+++|||
T Consensus 78 ~l~G~~--~~edL~~fr~~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~---~~~rvyv 152 (386)
T cd02017 78 FLEGRL--TEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDT---SDQKVWA 152 (386)
T ss_pred HHcCCC--CHHHHHhhccCCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCC---CCCeEEE
Confidence 999996 8999999999999 577999887666 4999999999999999999999999887776533 5799999
Q ss_pred EEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh--hcchhHHHHHhccCceEEEE--------------
Q 005021 237 ILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIWV-------------- 300 (719)
Q Consensus 237 iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~--~~~~~~~~~~~a~G~~~~~v-------------- 300 (719)
++||||++||++|||+++|++++|+|||+|||+|++||+++++. ...+++.+||++|||+|++|
T Consensus 153 llGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~g 232 (386)
T cd02017 153 FLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDG 232 (386)
T ss_pred EEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCc
Confidence 99999999999999999999999999999999999999999986 56899999999999999843
Q ss_pred --------------------------------------------------------------------------------
Q 005021 301 -------------------------------------------------------------------------------- 300 (719)
Q Consensus 301 -------------------------------------------------------------------------------- 300 (719)
T Consensus 233 g~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~~~kPt~I 312 (386)
T cd02017 233 GGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEHKGKPTVI 312 (386)
T ss_pred chHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhCCCCCeEE
Confidence
Q ss_pred --eeeecCCCc-cccccccccC-CCCCHHHHHHHHHHcCCC
Q 005021 301 --TTTIGFGSP-NKANSYSVHG-SALGAKEVDATRKNLGWP 337 (719)
Q Consensus 301 --~t~~g~g~~-~~~~~~~~h~-~~l~~~~~~~~~~~l~~~ 337 (719)
+|+||+|.+ +.++...+|+ .+++++++++++++++|+
T Consensus 313 ia~TikG~G~~~~~e~~~~~h~~~~~~~~e~~~~~~~lg~~ 353 (386)
T cd02017 313 LAKTIKGYGLGAAGEGRNHAHQVKKMTEDELKALRDRFGIP 353 (386)
T ss_pred EEeCeecCCCChhccCCcchhcCCCCCHHHHHHHHHHcCCC
Confidence 689999987 5777888886 888999999999999974
|
coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme. |
| >PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-49 Score=427.88 Aligned_cols=294 Identities=21% Similarity=0.235 Sum_probs=243.2
Q ss_pred cchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCccE
Q 005021 408 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPY 486 (719)
Q Consensus 408 ~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv 486 (719)
.+++|++++++|.+++++||+++++++|++..+.. ...+.+|++ +| |+||||+||+||+|+|+|+|||+.| ++||
T Consensus 34 ~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~-~~~~~~f~~-~fgP~R~id~GIaEq~~vg~AaGlA~~G--~~Pv 109 (355)
T PTZ00182 34 KMNVREAINSALDEELARDPKVFVLGEDVAQYGGV-YKCTKGLLD-KYGPDRVFDTPITEQGFAGFAIGAAMNG--LRPI 109 (355)
T ss_pred chHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCc-hhhhHHHHH-HhCCCceeecCccHHHHHHHHHHHHhCC--CEEE
Confidence 46789999999999999999999999998622110 112356866 89 9999999999999999999999999 6999
Q ss_pred EEe-hhhhHHhHHHHHHHH-hhhc------CCEEEEEecCCCccCCCCCCC-CChhhhhHHcCCCCeEEEeeCCHHHHHH
Q 005021 487 CAT-FFVFTDYMRAAIRIS-ALCE------AGVIYVMTHDSIGLGEDGPTH-QPIEHLASFRAMPNILMLRPADGNETAG 557 (719)
Q Consensus 487 ~~~-y~~F~~ra~dqir~~-a~~~------~pV~~v~~~~g~g~g~dG~TH-q~~edia~lr~iPnl~V~~P~d~~e~~~ 557 (719)
+++ |++|++|++|||++. |+++ +||.+++++.+.++|++|+|| |..+ ++||+||||+|++|+|+.|++.
T Consensus 110 v~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~~e--a~lr~iPn~~V~~Psd~~e~~~ 187 (355)
T PTZ00182 110 AEFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQSFE--AYFAHVPGLKVVAPSDPEDAKG 187 (355)
T ss_pred EEechhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccchHH--HHHhcCCCCEEEeeCCHHHHHH
Confidence 986 899999999999875 8763 455555556777789999999 5553 9999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEcCC----CCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCc
Q 005021 558 AYKVAVANRKRPSILALSRQ----KLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA 633 (719)
Q Consensus 558 ~l~~a~~~~~~P~~irl~r~----~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~ 633 (719)
+++++++ .++|+||++||. ..+.++. ..+.+++|+++++++ |.|++||+||+++..|++|++.|+++|++
T Consensus 188 ~l~~a~~-~~~P~~i~~p~~l~r~~~~~~~~-~~~~~~~Gk~~vl~~----G~di~Iia~Gs~~~~aleAa~~L~~~Gi~ 261 (355)
T PTZ00182 188 LLKAAIR-DPNPVVFFEPKLLYRESVEVVPE-ADYTLPLGKAKVVRE----GKDVTIVGYGSQVHVALKAAEELAKEGIS 261 (355)
T ss_pred HHHHHHh-CCCcEEEEeehHHhCCCCCCCCc-ccccccCCcceEecC----CCCEEEEEeCHHHHHHHHHHHHHHhCCCc
Confidence 9999997 589999987764 3332222 234578899998887 78999999999999999999999999999
Q ss_pred EEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcccccc-Cchhhh------------cCCceEEee-CcCCCCCCHHH
Q 005021 634 VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKIV------------GSKGKAIGI-DRFGASAPAGK 699 (719)
Q Consensus 634 v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~-G~~~~~------------~~~~~~ig~-d~f~~~g~~~e 699 (719)
++|||+++++|||++.+. +.+.+++ .+|++||+... ||++.+ ..++.++|+ |.|+++.. .
T Consensus 262 v~vI~~~~l~Pld~e~i~--~~~~~~~--~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p~~~--~ 335 (355)
T PTZ00182 262 CEVIDLRSLRPWDRETIV--KSVKKTG--RCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAK--N 335 (355)
T ss_pred EEEEEEeeCCCCCHHHHH--HHHhcCC--EEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCCCCh--H
Confidence 999999999999998764 3444443 36999999885 565421 346788999 78987764 4
Q ss_pred HHHHhCCCHHHHHHHHHHhC
Q 005021 700 IYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 700 l~~~~gl~~e~I~~~i~~~l 719 (719)
|++.+.++++.|+++|++++
T Consensus 336 le~~~~~~~~~i~~~~~~~~ 355 (355)
T PTZ00182 336 LEPAYLPDKEKVVEAAKRVL 355 (355)
T ss_pred HHHHhCCCHHHHHHHHHHhC
Confidence 89999999999999999875
|
|
| >COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-45 Score=371.60 Aligned_cols=291 Identities=19% Similarity=0.197 Sum_probs=241.1
Q ss_pred chHHHHHHHHHHHHHhhCCceEEEecCCC--CCccccccccccCcccCCC-CCccccccccchHHHHHHHHHhcCCCCcc
Q 005021 409 EATRNLSQTCLNALAKTLPGLLGGSADLA--SSNMTLLKMFGDFQKDTPE-ERNVRFGVREHGMGAICNGIALHSPGLIP 485 (719)
Q Consensus 409 ~s~r~a~~~~L~~l~~~dp~iv~~saDl~--~s~~~~~~g~~~f~~~~~p-~R~~d~GIaE~~~vg~AaGlA~~G~~~~P 485 (719)
+++++|++++|.+.|++|++++++++|++ ++.+..++| +++ +|+ +|+||+||+|.+++|+|.|+|+.| +||
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~G---L~~-kfG~~RV~DTPiaE~gi~G~avGaA~~G--lrP 75 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKG---LQE-KFGEERVIDTPIAESGIAGIAVGAALTG--LRP 75 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchh---HHH-HhCccceecCccchhhhHHHHHHHHHcC--Ccc
Confidence 56899999999999999999999999996 444545555 444 674 699999999999999999999999 799
Q ss_pred EEE-ehhhhHHhHHHHHHHH-h---h-----hcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHH
Q 005021 486 YCA-TFFVFTDYMRAAIRIS-A---L-----CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNET 555 (719)
Q Consensus 486 v~~-~y~~F~~ra~dqir~~-a---~-----~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~ 555 (719)
++. +|.+|+.-++|||-+. | | .++|+++++ ..|.|. .|+.||+..-.++|.++||++|++|+++.|+
T Consensus 76 ivEiqf~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~-p~G~g~--~~~~~HSqs~ea~f~h~PGlKVV~PStpyDA 152 (324)
T COG0022 76 IVEIQFADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRT-PNGGGI--GGGAQHSQSLEALFAHIPGLKVVMPSTPYDA 152 (324)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEc-CCCCCC--CchhhccCCHHHHHhcCCCceEEecCChHHH
Confidence 996 6999999999998765 3 2 479999997 344443 3566666666799999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCC----CCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCC
Q 005021 556 AGAYKVAVANRKRPSILALSRQKLP----HLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGG 631 (719)
Q Consensus 556 ~~~l~~a~~~~~~P~~irl~r~~~~----~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~G 631 (719)
+++|+.|++ .++||++..++.... .+++ ..+.+++||+.++++ |+|+|||+||.||+.+++||++|+++|
T Consensus 153 KGLL~aAIr-d~dPViflE~k~lY~~~~~eVP~-~~Y~iPlGkA~i~re----G~DvTivtyg~mv~~al~AAe~l~~~G 226 (324)
T COG0022 153 KGLLKAAIR-DPDPVIFLEHKRLYRSFKGEVPE-EDYTIPLGKAKIVRE----GSDVTIVTYGAMVHTALEAAEELEKEG 226 (324)
T ss_pred HHHHHHHhc-CCCCEEEEecHHHhcccccCCCC-CCccccccceeeEec----CCceEEEEechHHHHHHHHHHHHhhcC
Confidence 999999997 699999998753222 2333 456799999999998 899999999999999999999999999
Q ss_pred CcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchh------------hhcCCceEEee-CcCCCCCCHH
Q 005021 632 KAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEK------------IVGSKGKAIGI-DRFGASAPAG 698 (719)
Q Consensus 632 i~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~------------~~~~~~~~ig~-d~f~~~g~~~ 698 (719)
|+++|||+||+.|||.+++. +||.||++. +|+.|+....|++. ++.+++.|+.- |...++ ..
T Consensus 227 is~EVIDLRTl~PlD~etIi--~SvkKTgR~-viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~--~~ 301 (324)
T COG0022 227 ISAEVIDLRTLSPLDKETII--ASVKKTGRL-VIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPY--SA 301 (324)
T ss_pred CCeEEEeccccCccCHHHHH--HHHHhhCcE-EEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCc--ch
Confidence 99999999999999999985 799999965 46667776777653 34567777755 655543 35
Q ss_pred HHHHHhCCCHHHHHHHHHHhC
Q 005021 699 KIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 699 el~~~~gl~~e~I~~~i~~~l 719 (719)
.|.+.+-.+++.|.+++++++
T Consensus 302 ~lE~~~lp~~~~I~~av~~v~ 322 (324)
T COG0022 302 ALEKAYLPNPERIVAAVKKVL 322 (324)
T ss_pred hHHhhhCCCHHHHHHHHHHHh
Confidence 688888899999999999874
|
|
| >PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=379.93 Aligned_cols=233 Identities=23% Similarity=0.344 Sum_probs=158.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHL 161 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l 161 (719)
++.+| |++||+|||.++++.+++ ++||++++||+|||++|||++ ||+ |+|++|||+|||+ |+||+|
T Consensus 13 ls~~e-L~~La~eiR~~ii~~vs~-~GGHl~snLGvVELTiALH~v---Fd~------p~DkivwDvGHQ~---Y~HKiL 78 (270)
T PF13292_consen 13 LSIEE-LEQLAQEIREFIIETVSK-TGGHLASNLGVVELTIALHYV---FDS------PKDKIVWDVGHQA---YVHKIL 78 (270)
T ss_dssp S-GGG-HHHHHHHHHHHHHHHCTC-CCSTHHHHHCCHHHHHHHHHH---S-T------TTSEEEESSSTT----HHHHHC
T ss_pred CCHHH-HHHHHHHHHHHHHHHHhh-cCCCCCCCccHHHHHHHHHHH---hCC------CCCeEEEeccccc---chhhhc
Confidence 44444 999999999999999987 999999999999999999999 997 9999999999999 999999
Q ss_pred hCCCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccc
Q 005021 162 AGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG 241 (719)
Q Consensus 162 ~G~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG 241 (719)
|| |++.|.|+||.+|++ |||++.|+|+|.|.+||.|++||.|+|||.|+++++ .+++|||+||||
T Consensus 79 TG----R~~~f~TlRq~gGlS-GF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~----------~~~~vVaVIGDG 143 (270)
T PF13292_consen 79 TG----RRDRFHTLRQYGGLS-GFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKG----------EDRKVVAVIGDG 143 (270)
T ss_dssp TT----TCCCGGGTTSTTS---SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHT----------S---EEEEEETT
T ss_pred cC----cHHHhchhhhcCCcC-CCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcC----------CCCcEEEEECCc
Confidence 99 568999999999999 999999999999999999999999999999999987 378999999999
Q ss_pred ccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhc-------chhHHHHHhccCceEEEEeeeecCCCcccccc
Q 005021 242 CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAF-------TENVDKRFEGLGWHVIWVTTTIGFGSPNKANS 314 (719)
Q Consensus 242 ~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~-------~~~~~~~~~a~G~~~~~v~t~~g~g~~~~~~~ 314 (719)
+++.|++|||||+|+..+ +|+|+|+|||+|||+.+++... ..+.+.+++...+.+++. + ....+..
T Consensus 144 alt~Gma~EALN~~g~~~-~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~--~----~~~~~~~ 216 (270)
T PF13292_consen 144 ALTGGMAFEALNNAGHLK-SNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKK--I----PPIEEFA 216 (270)
T ss_dssp GGGSHHHHHHHHHHHHHT--SEEEEEEE-SBSSSB--SSHCCC-------------------------------------
T ss_pred chhHHHHHHHHHHHHhcC-CCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHh--h----hHHHHHH
Confidence 999999999999999998 7899999999999999997421 233444454444443331 1 0000000
Q ss_pred ccccCCCCCHHHHHHHHHHcCC----CCCCCCCcHHHHHHHHH
Q 005021 315 YSVHGSALGAKEVDATRKNLGW----PYEPFHVPEDVKKHWSR 353 (719)
Q Consensus 315 ~~~h~~~l~~~~~~~~~~~l~~----~~~~~~~~~~v~~~~~~ 353 (719)
.+.... ++.. ...+++++|+ |.|++++++ ++..|+.
T Consensus 217 ~r~~~s-~K~~-~~~lFe~LG~~Y~GPiDGHdl~~-Li~~l~~ 256 (270)
T PF13292_consen 217 KRIKES-LKGF-SPNLFEELGFDYIGPIDGHDLEE-LIEVLEN 256 (270)
T ss_dssp --------------CCCHHCT-EEEEEEETT-HHH-HHHHHHH
T ss_pred HHHhhh-hhhh-hHHHHHHcCCeEEeccCCCCHHH-HHHHHHH
Confidence 011111 1111 2357788887 888998865 6666654
|
|
| >cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-45 Score=378.99 Aligned_cols=226 Identities=54% Similarity=0.843 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCChhHH
Q 005021 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDL 172 (719)
Q Consensus 93 ~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l 172 (719)
++||+++++|+.++++||+|+++|++|++.+||+.+|++||+||+|++|||||+|+||++|++|++++++|++ +.++|
T Consensus 1 ~~~R~~~~~~~~~~~~gh~g~~~s~~~i~~~L~~~~~~~~~~~~~~~~rd~~v~s~gH~~~~~ya~l~~~g~~--~~~~l 78 (255)
T cd02012 1 NRIRRLSIDMVQKAGSGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHASPALYAVLALAGYL--PEEDL 78 (255)
T ss_pred ChHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHhCcCCcCCCCCCCCeEEEcCCcHHHHHHHHHHHcCCC--CHHHH
Confidence 3699999999999999999999999999999999999999999999999999999999999999999999986 89999
Q ss_pred hhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHH
Q 005021 173 KNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEAS 252 (719)
Q Consensus 173 ~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAl 252 (719)
.+||+.++.++|||++...||+++++|++|+|++.|+|+|+|.++.+ .+++|||++|||++++|++||++
T Consensus 79 ~~~~~~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~----------~~~~v~~i~GDG~~~~G~~~eal 148 (255)
T cd02012 79 KTFRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLG----------FDYRVYVLLGDGELQEGSVWEAA 148 (255)
T ss_pred HHhcccCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhC----------CCCEEEEEECcccccccHHHHHH
Confidence 99999999899999987788999999999999999999999999875 47899999999999999999999
Q ss_pred HHhhhcCCCcEEEEEeCCCCCcccchh-hhcchhHHHHHhccCceEEEE---------------------------eeee
Q 005021 253 SLAGHLGLGKLIAFYDDNHISIDGDTE-IAFTENVDKRFEGLGWHVIWV---------------------------TTTI 304 (719)
Q Consensus 253 n~A~~~~L~nli~ivddN~~sis~~~~-~~~~~~~~~~~~a~G~~~~~v---------------------------~t~~ 304 (719)
+.|++++|+||++|+|||++++++++. .....++.+++++|||++++| +|.+
T Consensus 149 ~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~t~k 228 (255)
T cd02012 149 SFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAKTIK 228 (255)
T ss_pred HHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 999999999999999999999999884 345678999999999999988 6889
Q ss_pred cCCCccccccccccCCCCCHHHHHHH
Q 005021 305 GFGSPNKANSYSVHGSALGAKEVDAT 330 (719)
Q Consensus 305 g~g~~~~~~~~~~h~~~l~~~~~~~~ 330 (719)
|+|.+..+++..+|+.+++++++++.
T Consensus 229 g~g~~~~e~~~~~H~~~~~~~~~~~~ 254 (255)
T cd02012 229 GKGVPFMENTAKWHGKPLGEEEVELA 254 (255)
T ss_pred ccccCccCCCccccCCCCCHHHHHhh
Confidence 99998888888999998888777643
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. |
| >KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=313.89 Aligned_cols=291 Identities=17% Similarity=0.214 Sum_probs=238.0
Q ss_pred cchHHHHHHHHHHHHHhhCCceEEEecCCCC--CccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCc
Q 005021 408 AEATRNLSQTCLNALAKTLPGLLGGSADLAS--SNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLI 484 (719)
Q Consensus 408 ~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~--s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~ 484 (719)
.++.|+|++++|.+.+++||++++++++++- +.....+||- + +| +.|++|+||+|.+..|+|.|.|..| ++
T Consensus 34 ~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~---~-K~G~~RV~DTPItE~gFtG~avGAA~~G--Lr 107 (359)
T KOG0524|consen 34 EMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLL---D-KFGDKRVLDTPITEMGFTGIAVGAAMAG--LR 107 (359)
T ss_pred eeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHH---H-hcCCceeecCcchhcccchhhHhHHHhC--cc
Confidence 4778999999999999999999999999973 3334456642 3 56 6799999999999999999999999 79
Q ss_pred cEEE-ehhhhHHhHHHHHHHHh---------hhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHH
Q 005021 485 PYCA-TFFVFTDYMRAAIRISA---------LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNE 554 (719)
Q Consensus 485 Pv~~-~y~~F~~ra~dqir~~a---------~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e 554 (719)
|+|. +-..|+..+.|||-|+| .+++|++|++ +.|.+.| -|+.|. +.-.+|+.++||++|++|.+++|
T Consensus 108 Pi~efMtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRG-PnG~~~g-v~AqHS-Q~f~~wy~siPGlkvvapysaed 184 (359)
T KOG0524|consen 108 PICEFMTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRG-PNGAAAG-VAAQHS-QDFASWYGSIPGLKVVAPYSAED 184 (359)
T ss_pred hhhhhhcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeC-CCCcccc-hhhhhh-hhhHHHhccCCCceEeccCChhh
Confidence 9995 67899999999998864 2589999998 3455444 466663 43448999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEcC----CCCCCCCCC---CccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHH
Q 005021 555 TAGAYKVAVANRKRPSILALSR----QKLPHLAGT---SIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEEL 627 (719)
Q Consensus 555 ~~~~l~~a~~~~~~P~~irl~r----~~~~~~~~~---~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L 627 (719)
++++|+.|++ .++|+++...- ...+ ++++ +.+.+++|++++.++ |.|||||++.-++..|++||+.|
T Consensus 185 akGLlKaAIR-d~NPVV~lEnelLYg~~f~-i~~E~ls~~fv~p~gkAkier~----G~~iTivt~Sr~v~~~leAA~~L 258 (359)
T KOG0524|consen 185 AKGLLKAAIR-DENPVVFLENELLYGLSFE-IPEEALSKDFVLPLGKAKIERE----GTHITIVTYSRMVGHCLEAAETL 258 (359)
T ss_pred hhhHHHHhcc-CCCCeEEEechhhcCCCcc-CChhhcCcceeeeccceeeeec----CCceEEEEechhHHHHHHHHHHH
Confidence 9999999996 69999997532 1122 1111 346689999999998 79999999999999999999999
Q ss_pred HhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc-cCchh------------hhcCCceEEee-CcCCC
Q 005021 628 RKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEK------------IVGSKGKAIGI-DRFGA 693 (719)
Q Consensus 628 ~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~-~G~~~------------~~~~~~~~ig~-d~f~~ 693 (719)
.++|++++|||+|+|+|||.+++. .||.|+++ +|++|+.+. +|.+. |+++++.++.- |.+.+
T Consensus 259 ~~~Gvs~EVInlrSirP~D~~tI~--~Sv~KT~~--lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~DvP~P 334 (359)
T KOG0524|consen 259 VAKGVSAEVINLRSIRPFDIETIG--ASVKKTNR--LVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGADVPTP 334 (359)
T ss_pred HhcCCCceeEeeeccCcccHHHHH--HHHhhhce--EEEEeccccccchhHHHHHHHHHHHHhhhcchhhhhcCCCCCCc
Confidence 999999999999999999999986 68999985 599999987 46543 45567777644 77666
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 694 SAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 694 ~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
+. .+|.+..-.++++|+.++++++
T Consensus 335 Ya--~~lE~~a~p~~~~iV~Avk~~~ 358 (359)
T KOG0524|consen 335 YA--KTLEDWAVPQPADIVTAVKKLC 358 (359)
T ss_pred cc--hhhHhhcCCCHHHHHHHHHHhh
Confidence 64 4677777889999999999864
|
|
| >PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=343.44 Aligned_cols=455 Identities=13% Similarity=0.106 Sum_probs=294.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc-ChhHHHHHHHHhhhcCCC--cEEEEEeCCCCCc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLG--KLIAFYDDNHISI 274 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~-~eG~~~EAln~A~~~~L~--nli~ivddN~~si 274 (719)
.+|+|...+.|+|.|+|.++.+... .+.....++|++|||++ .+|.+||+||+|+.|+|+ ++|+||+||+|++
T Consensus 313 pShleav~Pva~G~A~A~q~~~~~~----~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~ 388 (924)
T PRK09404 313 PSHLEIVNPVVEGSVRARQDRRGDG----QDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGF 388 (924)
T ss_pred ccccccccCeehhHHHHHHHhcCCc----ccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEE
Confidence 4899999999999999999875210 11123689999999998 799999999999999995 6999999999999
Q ss_pred ccchhhh-cchhHHHHHhccCceEEEE-----------------eeeecCCCccccc-cccccCCCCC-------HHHHH
Q 005021 275 DGDTEIA-FTENVDKRFEGLGWHVIWV-----------------TTTIGFGSPNKAN-SYSVHGSALG-------AKEVD 328 (719)
Q Consensus 275 s~~~~~~-~~~~~~~~~~a~G~~~~~v-----------------~t~~g~g~~~~~~-~~~~h~~~l~-------~~~~~ 328 (719)
+++.... ......++.++||.+++.| ..++|.|+.+++. .+++||+.-. +++++
T Consensus 389 tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~yr~p~ey~ 468 (924)
T PRK09404 389 TTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYK 468 (924)
T ss_pred eeCHHHhccchhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCcCCCHHHHH
Confidence 9988643 3456888999999999999 3467888887753 5666665321 23333
Q ss_pred HHHHHcCCCCCCCCCcHHHHHHHHH-Hhhcch-------hHHHHHHHHHh-hh--hhc-Cchh-----hh----------
Q 005021 329 ATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGA-------TLEAEWNAKFA-EY--EKK-YPEE-----AA---------- 381 (719)
Q Consensus 329 ~~~~~l~~~~~~~~~~~~v~~~~~~-~~~~g~-------~~~~~~~~~~~-~~--~~~-~p~~-----~~---------- 381 (719)
...+. .+| +..|++ +..+|. .+..+..+.+. ++ ++. .+.. +.
T Consensus 469 ~~~~~----~dp-------i~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 537 (924)
T PRK09404 469 KIKKH----PTT-------RELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPADWLAGDWSPYLGHEWDDP 537 (924)
T ss_pred HHHhc----CCH-------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccccc
Confidence 22211 121 222322 222221 11111111111 01 110 0100 00
Q ss_pred --------hhhhhhc--CCCCCcccccCCCC----------CCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCc-
Q 005021 382 --------EFKSISS--GQLPAGWEKALPTY----------TPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSN- 440 (719)
Q Consensus 382 --------~~~~~~~--g~~p~~~~~~~~~~----------~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~- 440 (719)
.+..... ...|+++. ..|+. ..+.....+..|...++..++++|++|++.++|++.++
T Consensus 538 ~~t~v~~~~l~~~~~~~~~~P~~f~-~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtF 616 (924)
T PRK09404 538 VDTGVPLERLKELAEKLTTVPEGFK-VHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTF 616 (924)
T ss_pred cCCCCCHHHHHHHHHHhccCCCCCc-ccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcc
Confidence 0000000 01122221 00000 01122356778888999999999999999999997432
Q ss_pred ------------cccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCcc--EEE-ehhhhHH---hHHHHH
Q 005021 441 ------------MTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIP--YCA-TFFVFTD---YMRAAI 501 (719)
Q Consensus 441 ------------~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~P--v~~-~y~~F~~---ra~dqi 501 (719)
...+.-+..+.. +| |.|++|++|+|.+++|++.|+|+.| ++| |+. +|.+|+. .++||+
T Consensus 617 shRHavl~dq~~gg~~~~~~~l~~-~~g~~rV~nsplsE~~~~G~~~G~a~~g--~~~l~i~E~qfgDF~~~AQ~~~Dq~ 693 (924)
T PRK09404 617 SHRHAVLHDQKTGETYIPLNHLSE-GQASFEVYDSPLSEEAVLGFEYGYSTAE--PNTLVIWEAQFGDFANGAQVVIDQF 693 (924)
T ss_pred cccchhccccCCCCEeccccchhh-hcCCceEecCcchHHHHHHHHHHHHhcC--CCCceEEEEeccccccchHHHHHHH
Confidence 111222233434 55 8999999999999999999999999 565 885 7999986 779997
Q ss_pred HHHh--h--hcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCC--CCeEEEeeCCHHHHHHHHHHHH-HcCCCcEEEEE
Q 005021 502 RISA--L--CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAM--PNILMLRPADGNETAGAYKVAV-ANRKRPSILAL 574 (719)
Q Consensus 502 r~~a--~--~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~i--Pnl~V~~P~d~~e~~~~l~~a~-~~~~~P~~irl 574 (719)
-+.+ . ...++++.+.| | ++..|+-||+..-.++|... |||+|+.|+++.|+.++|+.++ +...+|++|..
T Consensus 694 i~~~~~k~~~~sglv~~~p~-G--~~g~g~~hsS~~~E~~l~~~~~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~ 770 (924)
T PRK09404 694 ISSGEQKWGRLSGLVMLLPH-G--YEGQGPEHSSARLERFLQLCAEDNMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMT 770 (924)
T ss_pred HHHHHHHhcCccCeEEEecC-c--CCCCChhhhccCHHHHHHhCCCCCCEEEecCCHHHHHHHHHHHHhhCCCCCEEEec
Confidence 6653 1 24677777643 3 33457788776666888555 7999999999999999999865 54359999999
Q ss_pred cCCCCCCCCC-CCccccccccEE-EecCCC-CCCCCE--EEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHH
Q 005021 575 SRQKLPHLAG-TSIDGVEKGAYI-ISDNSS-GNKPDV--ILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQS 649 (719)
Q Consensus 575 ~r~~~~~~~~-~~~~~~~~G~~~-i~~~~~-~~g~dv--tIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~ 649 (719)
||.-+..... .....+..|.+. ++.+.. ..+.|| +||+||.+++.++++++.+. ..+++||++++|.|||.+.
T Consensus 771 pK~L~r~~~~~s~~~e~~~~~f~~vi~~~~~~~~~~v~r~iv~~Gk~~~~~~~a~~~~~--~~~v~ii~le~L~P~~~~~ 848 (924)
T PRK09404 771 PKSLLRHPLAVSSLEELAEGSFQPVIGDIDELDPKKVKRVVLCSGKVYYDLLEARRKRG--IDDVAIVRIEQLYPFPHEE 848 (924)
T ss_pred cHHHhCCCCCCCCHHHcCCCCceeecccccccCccceeEEEEEcCHHHHHHHHHHHhCC--CCCEEEEEeeeeCCCCHHH
Confidence 8754421100 011112222221 211100 015689 79999999999999988553 3499999999999999988
Q ss_pred HHhhhhhccCC--CceEEEEccccccCchhh
Q 005021 650 DAYKESVLPAA--VSARVSIEAGSTFGWEKI 678 (719)
Q Consensus 650 ~~~~~sv~~~~--~~~vvvvE~~~~~G~~~~ 678 (719)
+. ++|.+++ ..++++.|+....|...|
T Consensus 849 i~--~~v~k~~~~~~~v~vqEe~~n~G~~~~ 877 (924)
T PRK09404 849 LA--AELAKYPNAKEVVWCQEEPKNQGAWYF 877 (924)
T ss_pred HH--HHHHhcCCCCeEEEEeeCCCCCCcHHH
Confidence 75 6777753 245566777777775443
|
|
| >cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=306.93 Aligned_cols=159 Identities=27% Similarity=0.437 Sum_probs=144.8
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCChhHHhhhhhcCCCCCCCCC
Q 005021 108 SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPE 187 (719)
Q Consensus 108 ~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~~~r~~~~~~~g~p~ 187 (719)
+||+|++||++||+++||++ +|+ +|||||||+||++ |++++++|+ +++|++||+.++ ++|||+
T Consensus 1 ~gh~g~~ls~~~i~~~L~~~---~~~------~rDr~ils~gH~~---~~~~~~~g~----~~~l~~~~~~~~-~~g~p~ 63 (195)
T cd02007 1 GGHLGSNLGVVELTLALHYV---FDS------PKDKIIWDVGHQA---YPHKILTGR----RDQFHTLRQYGG-LSGFTK 63 (195)
T ss_pred CCCCCcchhHHHHHHHHHHh---cCC------CCCeEEEecccHH---HHHHHHHCC----HHHHhhhhcCCC-CCCCCc
Confidence 69999999999999999964 554 7999999999999 787788994 689999999999 779999
Q ss_pred CCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEE
Q 005021 188 NFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFY 267 (719)
Q Consensus 188 ~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~iv 267 (719)
+.++|++++++|++|+|++.|+|+|+|.|+++ .+++|||++|||+++||++|||+++|+++ +.|+++|+
T Consensus 64 ~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-~~~li~vv 132 (195)
T cd02007 64 RSESEYDAFGTGHSSTSISAALGMAVARDLKG----------KKRKVIAVIGDGALTGGMAFEALNNAGYL-KSNMIVIL 132 (195)
T ss_pred CCCCCCceECCCchhhhHHHHHHHHHHHHHhC----------CCCeEEEEEcccccccChHHHHHHHHHHh-CCCEEEEE
Confidence 88889999999999999999999999999876 37899999999999999999999999999 57899999
Q ss_pred eCCCCCcccchhhhcchhHHHHHhccCceEEE
Q 005021 268 DDNHISIDGDTEIAFTENVDKRFEGLGWHVIW 299 (719)
Q Consensus 268 ddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~ 299 (719)
|||+++++++++ +..++|+++||++..
T Consensus 133 dnN~~~~~~~~~-----~~~~~~~a~G~~~~~ 159 (195)
T cd02007 133 NDNEMSISPNVG-----TPGNLFEELGFRYIG 159 (195)
T ss_pred ECCCcccCCCCC-----CHHHHHHhcCCCccc
Confidence 999999998876 467889999998774
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). |
| >TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=338.17 Aligned_cols=450 Identities=15% Similarity=0.116 Sum_probs=294.8
Q ss_pred ccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc-ChhHHHHHHHHhhhcCCCcE---EEEEeC
Q 005021 194 IEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLGKL---IAFYDD 269 (719)
Q Consensus 194 i~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~-~eG~~~EAln~A~~~~L~nl---i~ivdd 269 (719)
+....+||+...++|+|.|+|.++.+... .+..+..++|++|||++ .+|.+||+||+|+.|+|+ + |+||.|
T Consensus 310 l~~npSHLeav~Pva~G~ArA~q~~~~~~----~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lP-vGGtIfvveN 384 (929)
T TIGR00239 310 LAFNPSHLEIVSPVVIGSTRARLDRLNDS----PESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYS-VGGTIHIIIN 384 (929)
T ss_pred ecCCCcccccccchhhhHHHHHHHhcCCc----ccccceEEEEEeccccccCCChHHHHHHHHHhcCCC-CCCEEEEEEe
Confidence 45567899999999999999999875210 11135789999999997 799999999999999995 5 999999
Q ss_pred CCCCcccchhhhc-chhHHHHHhccCceEEEE-----------------eeeecCCCccccc-cccccCCCCCH------
Q 005021 270 NHISIDGDTEIAF-TENVDKRFEGLGWHVIWV-----------------TTTIGFGSPNKAN-SYSVHGSALGA------ 324 (719)
Q Consensus 270 N~~sis~~~~~~~-~~~~~~~~~a~G~~~~~v-----------------~t~~g~g~~~~~~-~~~~h~~~l~~------ 324 (719)
|+|+++++..... .....++.++||.+++.| ..++|+|+.+++. .+++||+.-.+
T Consensus 385 Nqyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yr 464 (929)
T TIGR00239 385 NQIGFTTNPLDARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQ 464 (929)
T ss_pred CCEEEEEcHHHhcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCC
Confidence 9999999875443 446888999999999999 3466888877753 55666553211
Q ss_pred -HHHHHHHHHcCCCCCCCCCcHHHHHHHHH-Hhhcch-------hHHHHHHHHHh-hh--hhcC--chhh--h--hhhh-
Q 005021 325 -KEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGA-------TLEAEWNAKFA-EY--EKKY--PEEA--A--EFKS- 385 (719)
Q Consensus 325 -~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-~~~~g~-------~~~~~~~~~~~-~~--~~~~--p~~~--~--~~~~- 385 (719)
++++...+ ..+ .+..|++ +..+|- .+.+++.+.+. ++ ++.. |... . .+..
T Consensus 465 p~~~~~i~~----~~d-------Pi~~~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 533 (929)
T TIGR00239 465 PLMYQKIKK----HPT-------PRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNTASFTWSPELNH 533 (929)
T ss_pred HHHHHHHHh----CCC-------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccccccccc
Confidence 22221111 011 2223332 222221 11111111111 01 1111 1110 0 0000
Q ss_pred ----hh-cC--------------CCCCcccccCC-----------CCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecC
Q 005021 386 ----IS-SG--------------QLPAGWEKALP-----------TYTPESPAEATRNLSQTCLNALAKTLPGLLGGSAD 435 (719)
Q Consensus 386 ----~~-~g--------------~~p~~~~~~~~-----------~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saD 435 (719)
.. ++ ..|+.++. .| ....+....++..|...+|..++++|++|+++++|
T Consensus 534 ~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~-h~~~~k~~~~R~~~~~~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeD 612 (929)
T TIGR00239 534 EWDEEYPNKVEMKRLQELAKRISEVPEGVEM-HSRVAKIYFDRTKAMAAGEKLFDWGGAENLAFATLVDDGIPVRLSGED 612 (929)
T ss_pred ccccCCCCCCCHHHHHHHHHHhccCCCCccc-cHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCEEEEeee
Confidence 00 00 01222210 00 00011123567899999999999999999999999
Q ss_pred CCCCcc----------------ccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCccE--E-EehhhhHH
Q 005021 436 LASSNM----------------TLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPY--C-ATFFVFTD 495 (719)
Q Consensus 436 l~~s~~----------------~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv--~-~~y~~F~~ 495 (719)
++.+++ ..+++ +.. +| +.|++|++|+|.+++|++.|+|+.| ++|+ + .+|.+|+.
T Consensus 613 v~rGtFshRHavl~dq~~g~~~~~~~~---l~~-~~g~~rV~nsplSE~a~~G~~~G~a~~g--~~~l~i~E~qfgDF~~ 686 (929)
T TIGR00239 613 SERGTFFQRHAVLHDQSNGSTYTPLQH---LHN-GQGAFRVWNSVLSEESVLGFEYGYATTS--PRTLVIWEAQFGDFAN 686 (929)
T ss_pred CCCcccccccccccccccCceeecccc---hhh-hcCCeeEEcCCccHHHHHHHHHhHHhcC--CCCceEEEEeccchhc
Confidence 976554 22333 433 45 7999999999999999999999999 4774 5 47999985
Q ss_pred ---hHHHHHHHH--hh--hcCCEEEEEecCCCccCCCCCCCCChhhhhHH--cCCCCeEEEeeCCHHHHHHHHH-HHHHc
Q 005021 496 ---YMRAAIRIS--AL--CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASF--RAMPNILMLRPADGNETAGAYK-VAVAN 565 (719)
Q Consensus 496 ---ra~dqir~~--a~--~~~pV~~v~~~~g~g~g~dG~THq~~edia~l--r~iPnl~V~~P~d~~e~~~~l~-~a~~~ 565 (719)
.++||+-+. +. ...++++...| | ++..|+-||+..-.++| .++|||+|+.|+++.|++++|+ .|++.
T Consensus 687 ~AQv~~Dq~i~~~~~K~~~~sglv~~~p~-G--~~g~g~~hsS~~~E~~lql~~~~gl~Vv~pstpad~~~lLrrqa~r~ 763 (929)
T TIGR00239 687 GAQVVIDQFISSGEQKWGQMSGLVMLLPH-G--YEGQGPEHSSGRLERFLQLAAEQNMQVCVPTTPAQVFHILRRQALRG 763 (929)
T ss_pred chHHHHHHHHHHHHHHhcCccCeEEEecC-c--CCCCCchhhccCHHHHHHHhCCCCCEEEecCCHHHHHHHHHHHHHhC
Confidence 779998665 22 24667777643 3 34467788776666888 8999999999999999999999 68874
Q ss_pred CCCcEEEEEcCCCCCC---------CCCCCccccccccEEEecCCC-CCCCCEE-EEEeCHhHHHHHHHHHHHHhCCCcE
Q 005021 566 RKRPSILALSRQKLPH---------LAGTSIDGVEKGAYIISDNSS-GNKPDVI-LIGTGSELEIAAKAAEELRKGGKAV 634 (719)
Q Consensus 566 ~~~P~~irl~r~~~~~---------~~~~~~~~~~~G~~~i~~~~~-~~g~dvt-Iva~G~~v~~al~Aa~~L~~~Gi~v 634 (719)
.++|+++..||.-+.. ++.. .+..+++. +.+++. -...+++ ||.++.++..++++ +.++++|+++
T Consensus 764 ~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~-~f~~~i~~--~~~~~~~~~~~~v~~vv~~sg~v~~~l~~-~~~~~~~~~v 839 (929)
T TIGR00239 764 MRRPLVVMSPKSLLRHPLAVSSLEELAEG-TFQPVIGE--IEESGLSLDPEGVKRLVLCSGKVYYDLHE-QRRKNGQKDV 839 (929)
T ss_pred CCCCEEEeccHhhhcCccccCccccCCCC-Cccccccc--ccccccccCccCCcEEEEECchHHHHHHH-HHHhcCCCCE
Confidence 5899999998754421 1111 12222321 111100 0023555 66666688888888 6677789999
Q ss_pred EEEecCChhhHHHHHHHhhhhhccCC--CceEEEEccccccC-c
Q 005021 635 RVVSFVSWELFDEQSDAYKESVLPAA--VSARVSIEAGSTFG-W 675 (719)
Q Consensus 635 ~VId~~~l~pld~~~~~~~~sv~~~~--~~~vvvvE~~~~~G-~ 675 (719)
+|||+++|.|||.+.+. +++.++. ..++++-|+....| |
T Consensus 840 ~iirle~L~Pf~~~~i~--~sl~k~~~~~~~vw~qEep~n~Gaw 881 (929)
T TIGR00239 840 AIVRIEQLYPFPHKAVK--EVLQQYPNLKEIVWCQEEPLNMGAW 881 (929)
T ss_pred EEEEeeeeCCCCHHHHH--HHHHhcCCCCeEEEEeccCCCCCCH
Confidence 99999999999999875 6777764 24556667766666 5
|
The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase. |
| >cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=290.19 Aligned_cols=154 Identities=42% Similarity=0.579 Sum_probs=143.1
Q ss_pred HHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEEEehhhh
Q 005021 414 LSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVF 493 (719)
Q Consensus 414 a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F 493 (719)
+++++|.+++++||+++++++|++.++. +..|++ +||+||+|+||+|++|+++|+|||+.| ++||+++|..|
T Consensus 2 ~~~~~l~~~~~~~~~~v~~~~Dl~~~~~-----~~~~~~-~~p~r~i~~gIaE~~~vg~A~GlA~~G--~~pi~~~~~~f 73 (156)
T cd07033 2 AFGEALLELAKKDPRIVALSADLGGSTG-----LDKFAK-KFPDRFIDVGIAEQNMVGIAAGLALHG--LKPFVSTFSFF 73 (156)
T ss_pred hHHHHHHHHHhhCCCEEEEECCCCCCCC-----cHHHHH-hCCCCeEEeChhHHHHHHHHHHHHHCC--CeEEEEECHHH
Confidence 5789999999999999999999975532 345766 899999999999999999999999999 69999999999
Q ss_pred HHhHHHHHH-HHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEE
Q 005021 494 TDYMRAAIR-ISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSIL 572 (719)
Q Consensus 494 ~~ra~dqir-~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~i 572 (719)
++|++|||| +.|++++||+++++++|++.|++|+|||+++|+++||++||++|++|+|++|++.++++|++ .++|+||
T Consensus 74 ~~ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~-~~~P~~i 152 (156)
T cd07033 74 LQRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALE-YDGPVYI 152 (156)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEE
Confidence 999999999 56999999999999998988899999999999999999999999999999999999999997 5789999
Q ss_pred EEcC
Q 005021 573 ALSR 576 (719)
Q Consensus 573 rl~r 576 (719)
|++|
T Consensus 153 rl~~ 156 (156)
T cd07033 153 RLPR 156 (156)
T ss_pred EeeC
Confidence 9987
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included |
| >PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=278.55 Aligned_cols=168 Identities=26% Similarity=0.316 Sum_probs=143.1
Q ss_pred cchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccccccchHHHHHHHHHhcC-CCCccE
Q 005021 408 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHS-PGLIPY 486 (719)
Q Consensus 408 ~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G-~~~~Pv 486 (719)
+.++|++++++|.+++++||+++++++|++++++....++. .+..|+||||+||+|++|+++|+|||+.| . ++||
T Consensus 2 k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~~~~~~---~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~-~~~~ 77 (178)
T PF02779_consen 2 KISMRDAFGEALAELAEEDPRVVVIGADLGGGTFGVTFGLA---FPFGPGRFINTGIAEQNMVGMAAGLALAGGL-RPPV 77 (178)
T ss_dssp EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTSTTTTHH---BHHTTTTEEE--S-HHHHHHHHHHHHHHSSS-EEEE
T ss_pred CccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhhhhhcc---ccCCCceEEecCcchhhccceeeeeeecccc-ccee
Confidence 57899999999999999999999999999866554322211 11126699999999999999999999999 3 4788
Q ss_pred EEehhhhHH----hHHHHHH-HHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHH
Q 005021 487 CATFFVFTD----YMRAAIR-ISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKV 561 (719)
Q Consensus 487 ~~~y~~F~~----ra~dqir-~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~ 561 (719)
+.+|++|+. |+++|++ +.+++++||+ ++++++.++|.+|+|||+++|+++||+|||++|++|+|+.|++++|++
T Consensus 78 ~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~ 156 (178)
T PF02779_consen 78 ESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEAKGLLRA 156 (178)
T ss_dssp EEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHHHH
T ss_pred Eeeccccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccccccccccccccccCCCHHHHHHHHHH
Confidence 899999999 9999998 4699999999 778899999999999999999999999999999999999999999999
Q ss_pred HHHc-CCCcEEEEEcCCCCC
Q 005021 562 AVAN-RKRPSILALSRQKLP 580 (719)
Q Consensus 562 a~~~-~~~P~~irl~r~~~~ 580 (719)
+++. .++|+|||++|+.++
T Consensus 157 a~~~~~~~P~~ir~~r~~~~ 176 (178)
T PF02779_consen 157 AIRRESDGPVYIREPRGLYP 176 (178)
T ss_dssp HHHSSSSSEEEEEEESSEES
T ss_pred HHHhCCCCeEEEEeeHHhCC
Confidence 9973 589999999998775
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B .... |
| >cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=268.59 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=134.8
Q ss_pred HHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCC-CccccccccchHHHHHHHHHhcCCCCccEEE-ehh
Q 005021 414 LSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE-RNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFF 491 (719)
Q Consensus 414 a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~-R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~-~y~ 491 (719)
+++++|.+++++||+++++++|+..++.. ...++.|++ +||+ ||||+||+||+|+|+|+|||+.| ++||++ +|+
T Consensus 2 ~~~~~l~~~~~~~~~vv~l~~D~~~~~g~-~~~~~~~~~-~~p~~R~~~~gIaEq~~vg~AaGlA~~G--~~pi~~~~~a 77 (167)
T cd07036 2 AINEALDEEMERDPRVVVLGEDVGDYGGV-FKVTKGLLD-KFGPDRVIDTPIAEAGIVGLAVGAAMNG--LRPIVEIMFA 77 (167)
T ss_pred HHHHHHHHHHhcCCCEEEECcccccCCCc-chHhHHHHH-hCCCceEEeCCCcHHHHHHHHHHHHHcC--CEEEEEeehH
Confidence 68899999999999999999998643211 112356876 8999 99999999999999999999999 599998 799
Q ss_pred hhHHhHHHHHHHH-hhh--------cCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHH
Q 005021 492 VFTDYMRAAIRIS-ALC--------EAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVA 562 (719)
Q Consensus 492 ~F~~ra~dqir~~-a~~--------~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a 562 (719)
+|+.|++||||+. |++ ++||++++.+. +++.+|+|| +.+|+++||+||||+|++|+|+.|++.+++++
T Consensus 78 ~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~g--g~~~~G~th-s~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~ 154 (167)
T cd07036 78 DFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNG--GGIGGGAQH-SQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAA 154 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCC--CCCCcChhh-hhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 9999999999874 876 49999998443 467789985 58999999999999999999999999999999
Q ss_pred HHcCCCcEEEEEcC
Q 005021 563 VANRKRPSILALSR 576 (719)
Q Consensus 563 ~~~~~~P~~irl~r 576 (719)
++ .++|++|+.||
T Consensus 155 ~~-~~~P~~~~e~k 167 (167)
T cd07036 155 IR-DDDPVIFLEHK 167 (167)
T ss_pred Hh-CCCcEEEEecC
Confidence 96 68999999886
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain |
| >smart00861 Transket_pyr Transketolase, pyrimidine binding domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=253.07 Aligned_cols=158 Identities=32% Similarity=0.474 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHHHHhhCC-ceEEEecCCCCCccccccccccCcccCCCC-------CccccccccchHHHHHHHHHhcCC
Q 005021 410 ATRNLSQTCLNALAKTLP-GLLGGSADLASSNMTLLKMFGDFQKDTPEE-------RNVRFGVREHGMGAICNGIALHSP 481 (719)
Q Consensus 410 s~r~a~~~~L~~l~~~dp-~iv~~saDl~~s~~~~~~g~~~f~~~~~p~-------R~~d~GIaE~~~vg~AaGlA~~G~ 481 (719)
++|++++++|.+++++|+ +++++++|+..++.... .+ .||+ ||+|+||+|++|+++|+|||+.|
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~------~~-~~~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G- 72 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDR------GG-VFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALAG- 72 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCc------CC-ccCCCCCCCCccEEEcCcCHHHHHHHHHHHHHcC-
Confidence 368899999999999965 89999999976654321 11 4554 59999999999999999999999
Q ss_pred CCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecC-CCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHH
Q 005021 482 GLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHD-SIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYK 560 (719)
Q Consensus 482 ~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~-g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~ 560 (719)
++||+++|+.|+.|+++|+|..+.++ +++++++++ |...|++|+|||+++|+++||+|||++|++|+|+.|++.+++
T Consensus 73 -~~pi~~~~~~f~~~a~~~~~~~~~~~-~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~~~~l~ 150 (168)
T smart00861 73 -LRPVVAIFFTFFDRAKDQIRSDGAMG-RVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKGLLR 150 (168)
T ss_pred -CCcEEEeeHHHHHHHHHHHHHhCccc-CCCEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHHHHHHH
Confidence 59999999999999999999985555 555666665 577899999999999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEEcCC
Q 005021 561 VAVANRKRPSILALSRQ 577 (719)
Q Consensus 561 ~a~~~~~~P~~irl~r~ 577 (719)
++++..++|+|||++|+
T Consensus 151 ~a~~~~~~p~~i~~~~~ 167 (168)
T smart00861 151 AAIRRDDGPPVIRLERK 167 (168)
T ss_pred HHHhCCCCCEEEEecCC
Confidence 99965578999999875
|
Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. |
| >KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=253.28 Aligned_cols=288 Identities=16% Similarity=0.152 Sum_probs=222.4
Q ss_pred CcchHHHHHHHHHHHHHhhCCceEEEecCCCC-CccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCc
Q 005021 407 PAEATRNLSQTCLNALAKTLPGLLGGSADLAS-SNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLI 484 (719)
Q Consensus 407 ~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~-s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~ 484 (719)
.++..-++++++|.-.++.||+-+++++|++- +.+.-+.| +++ +| .+|+||++++||+++|+..|+|..|. +
T Consensus 39 ~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvfrct~g---l~~-kfgk~rvfntplceqgivgfgig~aa~g~--~ 112 (362)
T KOG0525|consen 39 KKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVFRCTTG---LAE-KFGKDRVFNTPLCEQGIVGFGIGLAAMGA--T 112 (362)
T ss_pred ccchHHHHHHHHHHHHhhcCCceEEeccccccceEEEeecc---hHH-HhCccccccCchhhcccceechhhhhccc--c
Confidence 34555688999999999999999999999974 33332333 433 55 48999999999999999999999994 8
Q ss_pred cEEEe-hhhhHHhHHHHHHHH-h---h-----hcCC-EEEEEecCCCc-cCCCCCCCCChhhhhHHcCCCCeEEEeeCCH
Q 005021 485 PYCAT-FFVFTDYMRAAIRIS-A---L-----CEAG-VIYVMTHDSIG-LGEDGPTHQPIEHLASFRAMPNILMLRPADG 552 (719)
Q Consensus 485 Pv~~~-y~~F~~ra~dqir~~-a---~-----~~~p-V~~v~~~~g~g-~g~dG~THq~~edia~lr~iPnl~V~~P~d~ 552 (719)
.+..+ |++++.-+||||.+- + | -|+. ..++. .+| +|..|--| +..-.++|.+.||++|+.|..+
T Consensus 113 aiaeiqfadyifpafdqivneaakfryrsgnqfncg~ltir~---p~gavghg~~yh-sqspeaff~h~pgikvviprsp 188 (362)
T KOG0525|consen 113 AIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRA---PWGAVGHGALYH-SQSPEAFFCHVPGIKVVIPRSP 188 (362)
T ss_pred eEEEEeeccccchhHHHHHHHHHhheeccCCccccCceEEec---cccccccccccc-cCCchhheecCCCceEEecCCc
Confidence 99975 778877899999874 3 2 1333 44443 344 57555444 4555599999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEcC----CCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHH
Q 005021 553 NETAGAYKVAVANRKRPSILALSR----QKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELR 628 (719)
Q Consensus 553 ~e~~~~l~~a~~~~~~P~~irl~r----~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~ 628 (719)
.|++++|-.+++ .++|+++..|| +...+++.. .+.++.+.++++++ |+|+|||+||..+|.++++|..-+
T Consensus 189 ~qakglllscir-dpnp~iffepk~lyr~a~edvp~~-dy~iplsqaevire----g~ditlv~wgtqvh~i~e~a~l~~ 262 (362)
T KOG0525|consen 189 RQAKGLLLSCIR-DPNPCIFFEPKILYRQAVEDVPEG-DYMIPLSQAEVIRE----GSDITLVAWGTQVHVIMEQACLAK 262 (362)
T ss_pred chhhceeeeecc-CCCceEEechHHHHHHhhhhCCCC-CccccccHHHHhhc----CCceEEEEcchhhHHHHHHHHhhH
Confidence 999999999996 69999999875 555556554 46799999999998 799999999999999999887544
Q ss_pred -hCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhc------------CCce-EEeeCcCCCC
Q 005021 629 -KGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVG------------SKGK-AIGIDRFGAS 694 (719)
Q Consensus 629 -~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~------------~~~~-~ig~d~f~~~ 694 (719)
+.|++++|||+.++-|+|.+.+. +||.|++.. +|++|.....||+..+. +++. ..|+|..-++
T Consensus 263 ek~giscevidlkti~pwd~d~v~--~sv~ktgrl-lisheapvtggfgaeiastv~ercfl~leapisrvcg~dtpfp~ 339 (362)
T KOG0525|consen 263 EKLGISCEVIDLKTIIPWDKDTVE--ESVQKTGRL-LISHEAPVTGGFGAEIASTVQERCFLNLEAPISRVCGLDTPFPH 339 (362)
T ss_pred HhcCCceEEEeeecccCccHHHHH--HHHHhhceE-EEeccCCccCcchHHHHHHHHHHHHhhccCchhhhccCCCCCcc
Confidence 45999999999999999999986 789999964 69999999899865332 2333 3477743333
Q ss_pred CCHHHHHH-HhCCCHHHHHHHHHHh
Q 005021 695 APAGKIYK-EFGITAEAVITAAKEV 718 (719)
Q Consensus 695 g~~~el~~-~~gl~~e~I~~~i~~~ 718 (719)
+.+ .|-.+.-.|.++|++.
T Consensus 340 -----vfepfy~ptk~ki~daik~~ 359 (362)
T KOG0525|consen 340 -----VFEPFYMPTKNKILDAIKKT 359 (362)
T ss_pred -----cccccccCcHhHHHHHHHHh
Confidence 222 3445778888888764
|
|
| >COG3957 Phosphoketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-27 Score=258.98 Aligned_cols=496 Identities=22% Similarity=0.266 Sum_probs=315.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCc-EEEeCCCCchHHHHHHHHhCCC-------CCChhHHh----
Q 005021 106 ANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDR-FVLSAGHGCMLQYALLHLAGYD-------SVQEDDLK---- 173 (719)
Q Consensus 106 ~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr-~Ils~GH~~~~~Ya~l~l~G~~-------~~~~~~l~---- 173 (719)
.--||+|++.+..-+.+-|-+..=++| .+. +|.-.||..|++-+..+|.|.. +.+.+.+.
T Consensus 58 r~lGHwGt~pg~s~~Y~H~nr~i~~~d--------~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~ 129 (793)
T COG3957 58 RLLGHWGTQPGLSFIYAHLNRLISKYD--------ANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFK 129 (793)
T ss_pred hhcccccCCCCchhhhhhhhHHHHhhC--------cceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHH
Confidence 457999999998866554443322333 455 4666799999999999999943 23334443
Q ss_pred hhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhH---HHH
Q 005021 174 NFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI---ANE 250 (719)
Q Consensus 174 ~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~---~~E 250 (719)
.|+-.||+. +|..+ ++||.....|.||++++.|.|.|+ ++| +-.+.|++||||-.+|. .|-
T Consensus 130 qFs~PgGi~-SH~~p-etPGsIhEGGeLGy~l~ha~gAa~---------d~P-----dli~~~vvGDGeaetgplatsWh 193 (793)
T COG3957 130 QFSFPGGIG-SHVAP-ETPGSIHEGGELGYALSHAYGAAF---------DNP-----DLIVACVVGDGEAETGPLATSWH 193 (793)
T ss_pred hccCCCCcc-cccCC-CCCCccCcCcchhHHHHHHHHhhc---------CCC-----CcEEEEEecccccccCccccccc
Confidence 455556654 78876 899999999999999999999886 333 78999999999777764 576
Q ss_pred HHHHhhhcCCCcEEEEEeCCCCCcccchh--hhcchhHHHHHhccCceEEEE----------------------------
Q 005021 251 ASSLAGHLGLGKLIAFYDDNHISIDGDTE--IAFTENVDKRFEGLGWHVIWV---------------------------- 300 (719)
Q Consensus 251 Aln~A~~~~L~nli~ivddN~~sis~~~~--~~~~~~~~~~~~a~G~~~~~v---------------------------- 300 (719)
+-.+..-.+-.+++-|+.-|+|+|+.++- ....+++.+.|++|||+-+.|
T Consensus 194 s~kf~np~~dGavLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~mAa~ldt~~~~i~~iq~ 273 (793)
T COG3957 194 SNKFLNPARDGAVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLMAAVLDTAFEEIQRIQR 273 (793)
T ss_pred cccccCccccCceeeEEEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhHHHHHHHHHHHHHHHHH
Confidence 65555555557899999999999999985 345667999999999998877
Q ss_pred ------------------eeeecCCCccc------cccccccCCCCCH-----HHHHHHHHHcCCCCCCCCCcHHHHHHH
Q 005021 301 ------------------TTTIGFGSPNK------ANSYSVHGSALGA-----KEVDATRKNLGWPYEPFHVPEDVKKHW 351 (719)
Q Consensus 301 ------------------~t~~g~g~~~~------~~~~~~h~~~l~~-----~~~~~~~~~l~~~~~~~~~~~~v~~~~ 351 (719)
+|-||++-+.. ++.-+.|..|++. +.+..+.+.+.. +++- | .|
T Consensus 274 ~ar~~~~~~~p~wPmiilrtPkGwt~p~~idG~~~eg~~raHqvPl~~~~~~p~h~~~l~~wl~s-y~p~----e---lf 345 (793)
T COG3957 274 RARENNEAIRPRWPMIILRTPKGWTGPVEIDGKKLEGSWRAHQVPLKGHNLNPAHLLELEEWLKS-YKPE----E---LF 345 (793)
T ss_pred HHHhcccccCccccceeeecCCCCcCceeecceeccccchhccCCCCCCCCCchhhHHHHHHHHh-cChH----h---hh
Confidence 34455443322 1223345555432 122222222221 1111 0 01
Q ss_pred HHHhhcchhHHHHHHHHHhhhh--hcCchhhhhhhhhhcCCCCCcccc-cCCCCCCCCCcchHHHHHHHHHHHHHhhCCc
Q 005021 352 SRHVAEGATLEAEWNAKFAEYE--KKYPEEAAEFKSISSGQLPAGWEK-ALPTYTPESPAEATRNLSQTCLNALAKTLPG 428 (719)
Q Consensus 352 ~~~~~~g~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~g~~p~~~~~-~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~ 428 (719)
. ..|....+.|.-.-++.+ ..+|.....+.. ..-.+| +|.. ..+.+..+........++++.|.++++.|++
T Consensus 346 d---e~gaL~~e~~~~ap~~~~Rm~~~p~angg~l~-~eL~lP-D~r~~~v~~~~~g~~~~~~t~~lg~~l~dv~k~N~~ 420 (793)
T COG3957 346 D---EHGALKPELRELAPKGEERMGANPHANGGLLP-RELPLP-DLRDYAVEVSEPGAVTAESTTALGRFLRDVMKLNPD 420 (793)
T ss_pred c---ccCCCCHHHHHhccccccccCCCCcccCcccc-ccCCCC-ChhhcCcccCCCCccchhhHHHHHHHHHHHHhcCcc
Confidence 0 111111111110000000 011111000000 000112 1110 0111112222233347889999999999998
Q ss_pred -eEEEecCCCCCcccc--ccccc-----------cCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhH
Q 005021 429 -LLGGSADLASSNMTL--LKMFG-----------DFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFT 494 (719)
Q Consensus 429 -iv~~saDl~~s~~~~--~~g~~-----------~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~ 494 (719)
+.++++|...|+... .+.+. +|. ...+|+++ .++|+.+.|++.|+++.|+ +-++++|..|+
T Consensus 421 ~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~l--sp~GRV~e-~LSEh~c~Gwlegy~LtGr--~glf~sYEaF~ 495 (793)
T COG3957 421 NFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFL--SPDGRVME-VLSEHACQGWLEGYLLTGR--HGLFASYEAFA 495 (793)
T ss_pred ceEeeCCCcchhhhhHHHHHHhhhhhcccccCccccc--CCCceeeh-hhcHHHHHHHHHHHHhcCC--ccceeeHHHHH
Confidence 999999976555331 22221 121 22479999 7999999999999999997 99999999998
Q ss_pred H---hHHHHH--H-HHh--------hhcCCEEEEEecCCCccCCCCCCCCChhhhh-HHcCCCC-eEEEeeCCHHHHHHH
Q 005021 495 D---YMRAAI--R-ISA--------LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA-SFRAMPN-ILMLRPADGNETAGA 558 (719)
Q Consensus 495 ~---ra~dqi--r-~~a--------~~~~pV~~v~~~~g~g~g~dG~THq~~edia-~lr~iPn-l~V~~P~d~~e~~~~ 558 (719)
. -|+.|. . ..| +..++.++.. .-.--+.+|.|||...-+. ++..+|+ ++||.|+|++.+-.+
T Consensus 496 ~iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l~TS--~vw~QdhNGfsHQdPgf~~~~~~k~~d~vRvyfPpDaNtlLav 573 (793)
T COG3957 496 HIVDSMFNQHAKWLKVTREVEWRRPIPSLNYLLTS--HVWRQDHNGFSHQDPGFIDHVANKKSDIVRVYFPPDANTLLAV 573 (793)
T ss_pred HHHHHHHhhhHHHHHHHHhcccCCCCCcccceeeh--hhhhcccCCCccCCchHHHHHHhhccCceeEecCCCCcchhhh
Confidence 4 566662 1 122 2344444432 2233589999999664444 3444555 699999999999999
Q ss_pred HHHHHHcCCCcEEEEEcCCCCCCCCC--CCccccccccEEEecCCC-CCCCCEEEEEeCHhH-HHHHHHHHHHHhCC--C
Q 005021 559 YKVAVANRKRPSILALSRQKLPHLAG--TSIDGVEKGAYIISDNSS-GNKPDVILIGTGSEL-EIAAKAAEELRKGG--K 632 (719)
Q Consensus 559 l~~a~~~~~~P~~irl~r~~~~~~~~--~~~~~~~~G~~~i~~~~~-~~g~dvtIva~G~~v-~~al~Aa~~L~~~G--i 632 (719)
+.+|++..+.-.+|..+|++.|.... +....+..|...+...+. .|.+||++.+.|.+. .++++|++.|++++ +
T Consensus 574 ~d~~l~s~n~in~iVa~K~p~pq~~t~~qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~~t~e~laAa~~L~e~~p~l 653 (793)
T COG3957 574 YDHCLRSRNKINVIVASKQPRPQWLTMEQAEKHCTDGAGIWEWASGDDGEPDVVMACAGDVPTIEVLAAAQILREEGPEL 653 (793)
T ss_pred hhHHhhccCceEEEEecCCCcceeecHHHHHHHhhcCcEEEEeccCCCCCCCEEEEecCCcchHHHHHHHHHHHHhCccc
Confidence 99999877777888889998887543 123345666554433221 125789999999976 68999999999998 8
Q ss_pred cEEEEecCChhhH
Q 005021 633 AVRVVSFVSWELF 645 (719)
Q Consensus 633 ~v~VId~~~l~pl 645 (719)
.++||++..+.-|
T Consensus 654 ~vRvVnVvdl~rL 666 (793)
T COG3957 654 RVRVVNVVDLMRL 666 (793)
T ss_pred eEEEEEEecchhc
Confidence 9998888765554
|
|
| >cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-22 Score=201.69 Aligned_cols=137 Identities=26% Similarity=0.396 Sum_probs=117.2
Q ss_pred CCCCchHHHHHHHHhCCC-----CCCh--hHHh-hhhh---cCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHH
Q 005021 148 AGHGCMLQYALLHLAGYD-----SVQE--DDLK-NFRQ---WGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEK 216 (719)
Q Consensus 148 ~GH~~~~~Ya~l~l~G~~-----~~~~--~~l~-~~r~---~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~ 216 (719)
.||.++++|+.++|.|.. .++. +.|. .||| .+| +++||++ ++||++.++|+||+||+.|+|+|+
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~gl~~lf~qfs~~gg-~psH~~~-~tpGi~~~~G~LG~gLs~A~G~a~--- 76 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEEGMRKLFKQFSFPGG-IPSHAAP-ETPGSIHEGGELGYSLSHAYGAVF--- 76 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHHHHHHHHHhcCCCCC-CCCCCcc-cCCCeeecccchhhHHHHHHHhhh---
Confidence 599999999999999931 0122 2353 4566 455 7899996 899999999999999999999984
Q ss_pred HhhcccCCCCCccCCcEEEEEEcccccChhHH---HHHHHHhhhcCCCcEEEEEeCCCCCcccchhh--hcchhHHHHHh
Q 005021 217 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIA---NEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFE 291 (719)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~---~EAln~A~~~~L~nli~ivddN~~sis~~~~~--~~~~~~~~~~~ 291 (719)
++ .+.+|||++||||++||.+ ||+.+++...+|+||+.|+++|+++|++++.. +..+++.++|+
T Consensus 77 ------d~-----~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~~ 145 (227)
T cd02011 77 ------DN-----PDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALFR 145 (227)
T ss_pred ------cC-----CCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHHH
Confidence 22 3679999999999999996 99999999999999999999999999999974 34688999999
Q ss_pred ccCceEEEE
Q 005021 292 GLGWHVIWV 300 (719)
Q Consensus 292 a~G~~~~~v 300 (719)
+|||++++|
T Consensus 146 ~yG~~~~~V 154 (227)
T cd02011 146 GYGYEPYFV 154 (227)
T ss_pred hCCCceEEE
Confidence 999999987
|
This enzyme requires divalent magnesium ions and TPP for activity. |
| >COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-18 Score=183.65 Aligned_cols=126 Identities=22% Similarity=0.249 Sum_probs=104.1
Q ss_pred CccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 005021 193 GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272 (719)
Q Consensus 193 gi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~ 272 (719)
++...+|++|++++.|+|+|+|.|+++. .+.+++|++|||+.++|.|||+||+|+.|+|| +||+|+||+|
T Consensus 130 ~~~~~~~iVg~Q~~~AaG~A~a~k~~~~---------~~~Va~~~~GDGat~qG~FhEalN~A~v~klP-vvf~ieNN~y 199 (358)
T COG1071 130 GFLGGSGIVGTQIPLAAGAALALKYRGT---------KDGVAVAFFGDGATNQGDFHEALNFAAVWKLP-VVFVIENNQY 199 (358)
T ss_pred ccCCCCceecccccHHHHHHHHHHHhCC---------CCcEEEEEecCCccccchHHHHHHHHHHhcCC-EEEEEecCCc
Confidence 6788999999999999999999999862 24599999999999999999999999999995 9999999999
Q ss_pred Ccccchhhhcc-hhHHHHHhccCceEEEE-----------------eeeecCCCccccc-c--ccccCCCCCHHHHH
Q 005021 273 SIDGDTEIAFT-ENVDKRFEGLGWHVIWV-----------------TTTIGFGSPNKAN-S--YSVHGSALGAKEVD 328 (719)
Q Consensus 273 sis~~~~~~~~-~~~~~~~~a~G~~~~~v-----------------~t~~g~g~~~~~~-~--~~~h~~~l~~~~~~ 328 (719)
+||.+...... +.++.|..+||++.++| +.+.|.||.+++- + ..-|+...++..|+
T Consensus 200 AiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YR 276 (358)
T COG1071 200 AISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYR 276 (358)
T ss_pred eeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccC
Confidence 99977664444 44566999999999999 5678999998863 3 34466553334454
|
|
| >PLN02374 pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=169.50 Aligned_cols=144 Identities=19% Similarity=0.138 Sum_probs=107.8
Q ss_pred cEEEeCCCCchHHHHHHHHhCCCCCChhHHhhhhhcCCCCCC---------CCCCCCCCCccccCCCcchhHHHHHHHHH
Q 005021 143 RFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPG---------HPENFETPGIEVTTGPLGQGMANAVGLAL 213 (719)
Q Consensus 143 r~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~~~r~~~~~~~g---------~p~~~~~pgi~~~tG~lG~gls~A~G~A~ 213 (719)
.+|++ .|.. .++.+..|. +.+++ +.++.|...| |.. ....++....|++|++++.|+|+|+
T Consensus 139 D~v~~-~yR~---h~~~La~G~---~~~~~--mael~Gk~~g~~~GrggsmH~~-~~~~~~~g~~g~lG~~lP~AvGaA~ 208 (433)
T PLN02374 139 DSVVS-TYRD---HVHALSKGV---PARAV--MSELFGKATGCCRGQGGSMHMF-SKEHNLLGGFAFIGEGIPVATGAAF 208 (433)
T ss_pred CEEEc-cCcC---hHHhhhcCC---CHHHH--HHHHcCCCCCCCCCCCCcCccC-chhhCCCCCceeccCchhHHHHHHH
Confidence 35665 6888 666666774 55553 2222222212 221 1123666788999999999999999
Q ss_pred HHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhh-cchhHHHHHhc
Q 005021 214 AEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA-FTENVDKRFEG 292 (719)
Q Consensus 214 A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~-~~~~~~~~~~a 292 (719)
|.|+++..++.. ..+.+|||++|||++++|.+||+||+|+.|+|+ +||||+||+|+|+.+.... ...+++++.++
T Consensus 209 A~k~~~~~~~~~---~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LP-vIfVV~NN~yaig~~~~~~t~~~dia~~A~a 284 (433)
T PLN02374 209 SSKYRREVLKEE---SCDDVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATSDPEIWKKGPA 284 (433)
T ss_pred HHHHhhcccccc---CCCCEEEEEECCCccccChHHHHHHHHHHhCCC-EEEEEeCCCEeecceeeeccCCCCHHHHHHh
Confidence 999986433221 136899999999999999999999999999995 9999999999999876543 34579999999
Q ss_pred cCceEEEE
Q 005021 293 LGWHVIWV 300 (719)
Q Consensus 293 ~G~~~~~v 300 (719)
|||+.+.|
T Consensus 285 ~G~~~~~V 292 (433)
T PLN02374 285 FGMPGVHV 292 (433)
T ss_pred cCCcEEEE
Confidence 99999999
|
|
| >PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-16 Score=166.82 Aligned_cols=160 Identities=24% Similarity=0.295 Sum_probs=116.1
Q ss_pred CcEEEeCCCCchHHHHHHHHhCCCCCChhHH-hhh-hhcCCCCCC-CCCC--CCCCCccccCCCcchhHHHHHHHHHHHH
Q 005021 142 DRFVLSAGHGCMLQYALLHLAGYDSVQEDDL-KNF-RQWGSKTPG-HPEN--FETPGIEVTTGPLGQGMANAVGLALAEK 216 (719)
Q Consensus 142 Dr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l-~~~-r~~~~~~~g-~p~~--~~~pgi~~~tG~lG~gls~A~G~A~A~~ 216 (719)
| +|++. |.+ ..+.+..|. +.+++ ..+ .+..+...| ||-. ....++...++++|.+++.|+|+|+|.|
T Consensus 47 D-~v~~~-yR~---~~~~la~g~---~~~~~~~e~~g~~~g~~g~~~~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k 118 (300)
T PF00676_consen 47 D-WVFPY-YRD---HGHALARGI---DLEEIFAELLGKAKGHGGGRHPLHFSDKGLNILGASSPVGAQVPIAAGVALAIK 118 (300)
T ss_dssp S-EEEEC-STT---HHHHHHTTT----HHHHHHHHHTBTTSTTTTGCTTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHH
T ss_pred C-EEEec-ccc---hhhhhhccc---cccchhHHhcCcccCCCCCccccccccccceeeeccccccccCccccchhHhhh
Confidence 5 45544 999 555566774 55443 222 222222211 2110 0112577889999999999999999999
Q ss_pred HhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh-hcchhHHHHHhccCc
Q 005021 217 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-AFTENVDKRFEGLGW 295 (719)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~-~~~~~~~~~~~a~G~ 295 (719)
+.+ .+.+++|++|||++++|.+|||||+|+.|+|| +||||+||+|+||++... .....++++.++||+
T Consensus 119 ~~~----------~~~v~v~~~GDga~~qG~~~EalN~A~~~~lP-vifvveNN~~aist~~~~~~~~~~~~~~a~~~gi 187 (300)
T PF00676_consen 119 YRG----------KDGVVVCFFGDGATSQGDFHEALNLAALWKLP-VIFVVENNQYAISTPTEEQTASPDIADRAKGYGI 187 (300)
T ss_dssp HTT----------SSEEEEEEEETGGGGSHHHHHHHHHHHHTTTS-EEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTS
T ss_pred hcC----------CceeEEEEecCcccccCccHHHHHHHhhccCC-eEEEEecCCcccccCccccccccchhhhhhccCC
Confidence 876 47899999999999999999999999999995 999999999999999875 445678999999999
Q ss_pred eEEEE-----------------eeeecCCCccccc-cccccCC
Q 005021 296 HVIWV-----------------TTTIGFGSPNKAN-SYSVHGS 320 (719)
Q Consensus 296 ~~~~v-----------------~t~~g~g~~~~~~-~~~~h~~ 320 (719)
+.+.| +.+.|+||.+.+. +++++++
T Consensus 188 p~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gH 230 (300)
T PF00676_consen 188 PGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGH 230 (300)
T ss_dssp EEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-S
T ss_pred cEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCC
Confidence 99999 4577889887753 4444443
|
Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A .... |
| >CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-15 Score=163.67 Aligned_cols=146 Identities=18% Similarity=0.138 Sum_probs=109.1
Q ss_pred cEEEeCCCCchHHHHHHHHhCCCCCChhHH-hh-hhhcCCCCCC-----CCCCCCCCCccccCCCcchhHHHHHHHHHHH
Q 005021 143 RFVLSAGHGCMLQYALLHLAGYDSVQEDDL-KN-FRQWGSKTPG-----HPENFETPGIEVTTGPLGQGMANAVGLALAE 215 (719)
Q Consensus 143 r~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l-~~-~r~~~~~~~g-----~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~ 215 (719)
.+|++ .|.+ .++.+..|. +.+++ .. |.+..|.+.| |... ...++....|++|.+++.|+|+|+|.
T Consensus 73 D~~~~-~yR~---~~~~la~G~---~~~~~~ae~~g~~~g~~~Gr~gs~H~~~-~~~~~~~~~g~lG~~lp~AvGaa~A~ 144 (341)
T CHL00149 73 DYVCS-TYRD---HVHALSKGV---PPKNVMAELFGKETGCSRGRGGSMHIFS-APHNFLGGFAFIGEGIPIALGAAFQS 144 (341)
T ss_pred CEEEc-cccc---HHHHHHcCC---CHHHHHHHHcCCCCCCCCCCCCCccccc-hhcCccCCChhhhccHHHHHHHHHHH
Confidence 35554 5899 777777885 55553 11 2233332222 3321 11244567899999999999999999
Q ss_pred HHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh-hcchhHHHHHhccC
Q 005021 216 KHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-AFTENVDKRFEGLG 294 (719)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~-~~~~~~~~~~~a~G 294 (719)
|+++..++.. ..+++|+|++|||++++|.+||+||+|+.|+|+ +||||.||+|+|+.++.. ....++.++.++||
T Consensus 145 k~~~~~~~~~---~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G 220 (341)
T CHL00149 145 IYRQQVLKEV---QPLRVTACFFGDGTTNNGQFFECLNMAVLWKLP-IIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFG 220 (341)
T ss_pred HHhccccccC---CCCCEEEEEeCCchhhhcHHHHHHHHHhhcCCC-EEEEEEeCCeeeecchhheeCCccHHHHHHhCC
Confidence 9886433221 136889999999999999999999999999995 999999999999988753 33578999999999
Q ss_pred ceEEEE
Q 005021 295 WHVIWV 300 (719)
Q Consensus 295 ~~~~~v 300 (719)
++.++|
T Consensus 221 ~~~~~V 226 (341)
T CHL00149 221 LPGIEV 226 (341)
T ss_pred CCEEEE
Confidence 999998
|
|
| >cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=155.04 Aligned_cols=160 Identities=22% Similarity=0.196 Sum_probs=119.8
Q ss_pred CCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCChhHHhhhhhcCCCCC-----
Q 005021 109 GHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTP----- 183 (719)
Q Consensus 109 GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~~~r~~~~~~~----- 183 (719)
|+.-++.|---+.+++-.. ++| .| +|++ .|.+ +++.+..|. +..++ +.++.|...
T Consensus 26 ~~~~~~~GqEa~~vg~~~~---l~~-------~D-~~~~-~yR~---~~~~la~G~---~~~~~--~~e~~g~~~g~~~G 85 (293)
T cd02000 26 GFYHLSIGQEAVAVGVAAA---LRP-------GD-WVFP-TYRD---HGHALARGV---DLKEM--LAELFGKETGPCKG 85 (293)
T ss_pred cccCCCCChHHHHHHHHHH---CCC-------CC-EEEe-cchh---HHHHHHcCC---CHHHH--HHHHcCCCCCCCCC
Confidence 3344466644333444433 443 36 4554 6999 777777885 55554 233222221
Q ss_pred ----CCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcC
Q 005021 184 ----GHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLG 259 (719)
Q Consensus 184 ----g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~ 259 (719)
+|.. ...+++...+|++|.+++.|+|+|+|.++.+ .+.+++|++|||++++|.+||+||+|+.++
T Consensus 86 ~~g~~h~~-~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~----------~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~ 154 (293)
T cd02000 86 RGGSMHIG-DKEKNFFGGNGIVGGQVPLAAGAALALKYRG----------EDRVAVCFFGDGATNEGDFHEALNFAALWK 154 (293)
T ss_pred CCCCCCCC-chhcCccccccccccchhHHHHHHHHHHHhC----------CCCEEEEEeCCCccccchHHHHHHHHHhhC
Confidence 2332 2356899999999999999999999999875 378999999999999999999999999999
Q ss_pred CCcEEEEEeCCCCCcccchhhh-cchhHHHHHhccCceEEEE
Q 005021 260 LGKLIAFYDDNHISIDGDTEIA-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 260 L~nli~ivddN~~sis~~~~~~-~~~~~~~~~~a~G~~~~~v 300 (719)
|| +++||+||+|+++.+.... ...++.++.++||++.+.|
T Consensus 155 lP-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~V 195 (293)
T cd02000 155 LP-VIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRV 195 (293)
T ss_pred CC-EEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEE
Confidence 95 9999999999999887543 3567999999999999988
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). |
| >PLN02269 Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.1e-15 Score=159.19 Aligned_cols=136 Identities=19% Similarity=0.165 Sum_probs=100.6
Q ss_pred cEEEeCCCCchHHHHHHHHhCCCCCChhHHhhhhhcCCCCCCCCC-------C-CCCCCccccCCCcchhHHHHHHHHHH
Q 005021 143 RFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPE-------N-FETPGIEVTTGPLGQGMANAVGLALA 214 (719)
Q Consensus 143 r~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~~~r~~~~~~~g~p~-------~-~~~pgi~~~tG~lG~gls~A~G~A~A 214 (719)
.+|++ .|.. +++.+..|. +..++ +.++.|...|... . ...-++...+|++|+++++|+|+|+|
T Consensus 83 D~~~~-~yR~---hg~~la~G~---~~~~~--~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A 153 (362)
T PLN02269 83 DAIIT-AYRD---HCTHLGRGG---TVLEV--FAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFA 153 (362)
T ss_pred CEEEe-chhh---HHHHHHcCC---CHHHH--HHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHH
Confidence 35664 4888 777788885 55553 2232222222111 1 12347778999999999999999999
Q ss_pred HHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhc-chhHHHHHhcc
Q 005021 215 EKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAF-TENVDKRFEGL 293 (719)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~-~~~~~~~~~a~ 293 (719)
.|+++ .+.+++|++|||++++|.+|||||+|+.|+|+ +||||+||+|+|++++.... ...+.++ ++
T Consensus 154 ~k~~~----------~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lP-vvfvveNN~~aist~~~~~~~~~~~~~~--~~ 220 (362)
T PLN02269 154 QKYNK----------EENVAFALYGDGAANQGQLFEALNIAALWDLP-VIFVCENNHYGMGTAEWRAAKSPAYYKR--GD 220 (362)
T ss_pred HHHhC----------CCCeEEEEECCCCcccCHHHHHHHHhhccCcC-EEEEEeCCCEeccCchhhhccchHHHHh--hc
Confidence 99986 37899999999999999999999999999995 99999999999999876432 3344443 34
Q ss_pred CceEEEE
Q 005021 294 GWHVIWV 300 (719)
Q Consensus 294 G~~~~~v 300 (719)
+.+.+.|
T Consensus 221 ~~p~~~V 227 (362)
T PLN02269 221 YVPGLKV 227 (362)
T ss_pred CCCeEEE
Confidence 5666777
|
|
| >TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=99.62 E-value=4e-14 Score=152.31 Aligned_cols=138 Identities=21% Similarity=0.190 Sum_probs=107.7
Q ss_pred EEEeCCCCchHHHHHHHHhCCCCCChhHHh-h-hhhcCCCCCC-----CCCCCCCCCccccCCCcchhHHHHHHHHHHHH
Q 005021 144 FVLSAGHGCMLQYALLHLAGYDSVQEDDLK-N-FRQWGSKTPG-----HPENFETPGIEVTTGPLGQGMANAVGLALAEK 216 (719)
Q Consensus 144 ~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~-~-~r~~~~~~~g-----~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~ 216 (719)
+|++ .|.. .++.+..|. +.+++. . +.+..|.+.| |.. ....++....|++|.+++.|+|+|+|.+
T Consensus 56 ~~~~-~yR~---~~~~la~G~---~~~~~~~~~~g~~~g~~~Gr~g~~h~~-~~~~~~~~~~g~~G~~lp~AiGaa~A~~ 127 (315)
T TIGR03182 56 YVIT-SYRD---HGHALARGV---PPKEVMAELTGRATGCSKGKGGSMHMF-DREKNFYGGHGIVGAQVPLATGLAFANK 127 (315)
T ss_pred EEEe-chhh---HHHHHHcCC---CHHHHHHHHcCCCCCCCCCCCCCCCcC-chhhCcccCcCcccccccHHHHHHHHHH
Confidence 6665 4888 777777885 555542 1 2222222222 222 1224677788999999999999999999
Q ss_pred HhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh-hcchhHHHHHhccCc
Q 005021 217 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-AFTENVDKRFEGLGW 295 (719)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~-~~~~~~~~~~~a~G~ 295 (719)
+.+ .+.+|+|++|||++++|.+||+||+|+.++|+ +++||.||+|++++++.. ....++.++.++||+
T Consensus 128 ~~~----------~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lP-vi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~ 196 (315)
T TIGR03182 128 YRG----------NDNVTACFFGDGAANQGQFYESFNMAALWKLP-VIFVIENNLYAMGTSVERSSSVTDLYKRGESFGI 196 (315)
T ss_pred HhC----------CCCEEEEEeCCCcccccHHHHHHHHhhccCcC-EEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCC
Confidence 875 37899999999999999999999999999995 999999999999988764 335689999999999
Q ss_pred eEEEE
Q 005021 296 HVIWV 300 (719)
Q Consensus 296 ~~~~v 300 (719)
+.+.|
T Consensus 197 ~~~~V 201 (315)
T TIGR03182 197 PGERV 201 (315)
T ss_pred CEEEE
Confidence 99998
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2 | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-16 Score=147.28 Aligned_cols=110 Identities=27% Similarity=0.385 Sum_probs=91.5
Q ss_pred ccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc
Q 005021 593 GAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST 672 (719)
Q Consensus 593 G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~ 672 (719)
|++.+.++ |.|++||+||+|++.|++|+++|+++|++++|||+++++|||++.+. +.+.+.+ . ++|+|++..
T Consensus 1 Gk~~~~~~----g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~--~~~~~~~-~-vvvvee~~~ 72 (124)
T PF02780_consen 1 GKAEVLRE----GADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALL--ESLKKTG-R-VVVVEEHYK 72 (124)
T ss_dssp TEEEEEES----SSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHH--HHSHHHH-H-HHHSETCES
T ss_pred CEEEEEeC----CCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchH--HHHHHhc-c-ccccccccc
Confidence 67777876 79999999999999999999999999999999999999999999874 2333332 3 599999975
Q ss_pred -cCchhh---------hc---CCceEEee-CcCCCCCCHHHHHHHhCCCHHHH
Q 005021 673 -FGWEKI---------VG---SKGKAIGI-DRFGASAPAGKIYKEFGITAEAV 711 (719)
Q Consensus 673 -~G~~~~---------~~---~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I 711 (719)
.|+++. .. .++.++|+ |.|+++| .+++++.+|+|+++|
T Consensus 73 ~gg~g~~i~~~l~~~~~~~~~~~~~~~g~~d~~~~~~-~~~~~~~~gl~~e~I 124 (124)
T PF02780_consen 73 IGGLGSAIAEYLAENGFNDLDAPVKRLGVPDEFIPHG-RAELLEAFGLDAESI 124 (124)
T ss_dssp EEEEHSSHHHHHHHHTTTGEEEEEEEEEE-SSSHHSS-HHHHHHHTTHSHHHH
T ss_pred cccHHHHHHHHHHHhCCccCCCCeEEEEECCCcccCc-HHHHHHHCcCCCCcC
Confidence 456542 12 35678999 8999999 999999999999987
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B .... |
| >TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.1e-14 Score=151.97 Aligned_cols=138 Identities=22% Similarity=0.240 Sum_probs=109.2
Q ss_pred CCcEEEeCCCCchHHHHHHHHhCCCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhc
Q 005021 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAA 220 (719)
Q Consensus 141 rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~ 220 (719)
.| +|++ .|.+ +++.+..|. +..++ +.+..|...|-.. ....++...+|++|.|++.|+|+|+|.|+.+
T Consensus 75 ~D-~~~~-~yR~---h~~~l~~G~---~~~~~--~ae~~g~~~g~~~-~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~- 142 (341)
T TIGR03181 75 DD-WVFP-SYRD---HAAMLARGV---PLVEI--LLYWRGDERGSWD-PEGVNILPPNIPIGTQYLHAAGVAYALKLRG- 142 (341)
T ss_pred CC-EEEc-chhh---HHHHHHcCC---CHHHH--HHHhcCcCcCCCC-chhcCccCCCchHhcchhHHHhHHHHHHhhC-
Confidence 35 4664 5999 777778885 55553 2333333333211 1235778899999999999999999999875
Q ss_pred ccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh-hcchhHHHHHhccCceEEE
Q 005021 221 RYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-AFTENVDKRFEGLGWHVIW 299 (719)
Q Consensus 221 ~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~-~~~~~~~~~~~a~G~~~~~ 299 (719)
.+.+|+|++|||++++|.+||+||+|+.|+|+ +|+||.||++.++.+... ....++.++.++|||+.+.
T Consensus 143 ---------~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LP-vi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~ 212 (341)
T TIGR03181 143 ---------EDNVAVTYFGDGGTSEGDFYEALNFAGVFKAP-VVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQ 212 (341)
T ss_pred ---------CCCEEEEEecCCccccChHHHHHHHHhccCCC-EEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEE
Confidence 37899999999999999999999999999995 999999999999887653 3356799999999999999
Q ss_pred E
Q 005021 300 V 300 (719)
Q Consensus 300 v 300 (719)
|
T Consensus 213 V 213 (341)
T TIGR03181 213 V 213 (341)
T ss_pred E
Confidence 8
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=152.60 Aligned_cols=206 Identities=26% Similarity=0.382 Sum_probs=134.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCc-EEEeCCCCchHHHHHHHHhCCC-------CCChhHHhhh-h
Q 005021 106 ANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDR-FVLSAGHGCMLQYALLHLAGYD-------SVQEDDLKNF-R 176 (719)
Q Consensus 106 ~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr-~Ils~GH~~~~~Ya~l~l~G~~-------~~~~~~l~~~-r 176 (719)
.--||.|++.|..=+.+.|-+..=++ +.|. +|...||+.|++.+..+|.|-. +.+.+.|..| |
T Consensus 45 rllGHWGt~PGlnfiyahlNrlI~~~--------~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~ 116 (379)
T PF09364_consen 45 RLLGHWGTSPGLNFIYAHLNRLIRKY--------DLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFR 116 (379)
T ss_dssp S--S-TTTHHHHHHHHHHHHHHHHHH--------TB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHH
T ss_pred ccccccCCCccHHHHHHHHHHHHHhc--------CCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHH
Confidence 45899999988876655555443334 3566 6888999999999999999921 1244555543 5
Q ss_pred hcCCCC---CCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhH---HHH
Q 005021 177 QWGSKT---PGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI---ANE 250 (719)
Q Consensus 177 ~~~~~~---~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~---~~E 250 (719)
|+ |.- ++|..+ ++||-....|.||.+++.|.|+++- +| |-+++|+|||||..+|- .|-
T Consensus 117 ~F-S~PgGipSH~~p-~tPGsIhEGGELGYaLshA~GA~~D---------nP-----dliv~~vvGDGEaETGplA~sWh 180 (379)
T PF09364_consen 117 QF-SFPGGIPSHVSP-ETPGSIHEGGELGYALSHAFGAVFD---------NP-----DLIVACVVGDGEAETGPLAASWH 180 (379)
T ss_dssp HB-TSTTSB-SSS-T-TSTT-S---SSTS-HHHHHHHHHTT----------T-----T-EEEEEEETTGGGSHHHHHHGG
T ss_pred hC-CCCCCCccccCc-CCCCccCcCcchhhHHHHHhhcccC---------CC-----CeEEEEEecCCcccCCccccccc
Confidence 55 332 345554 7899999999999999999999973 33 78999999999999995 454
Q ss_pred HHHHhhhcCCCcEEEEEeCCCCCcccchh--hhcchhHHHHHhccCceEEEE----------------------------
Q 005021 251 ASSLAGHLGLGKLIAFYDDNHISIDGDTE--IAFTENVDKRFEGLGWHVIWV---------------------------- 300 (719)
Q Consensus 251 Aln~A~~~~L~nli~ivddN~~sis~~~~--~~~~~~~~~~~~a~G~~~~~v---------------------------- 300 (719)
+-.+..-..-..|+-|+.-|++.|+.++- .+..+++.+.|+++||+.+.|
T Consensus 181 ~~kflnP~~dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~a~~~I~~iq~ 260 (379)
T PF09364_consen 181 SNKFLNPATDGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDWALEEIRAIQK 260 (379)
T ss_dssp GGGSS-TTTS-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeCcccCceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333224699999999999999984 456778999999999999988
Q ss_pred ------------------eeeecCCCccc------cccccccCCCCC-----HHHHHHHHHHcC
Q 005021 301 ------------------TTTIGFGSPNK------ANSYSVHGSALG-----AKEVDATRKNLG 335 (719)
Q Consensus 301 ------------------~t~~g~g~~~~------~~~~~~h~~~l~-----~~~~~~~~~~l~ 335 (719)
+|.||++-+.. +++.+.|..|+. +++++.+.+.+.
T Consensus 261 ~Ar~~~~~~~prwPmivlRtPKGWtgP~~vdG~~iEGt~raHQVPl~~~~~~~~~l~~Le~Wl~ 324 (379)
T PF09364_consen 261 AARSGNPAYRPRWPMIVLRTPKGWTGPKEVDGKPIEGTFRAHQVPLPDVRTDPEHLRLLEDWLR 324 (379)
T ss_dssp HHTT--SS----EEEEEEE--TTTTS-SEETTEE-TTSGGGSS-SSTTTTTSHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCCCcEEEEECCcccCCccccCCccccCcceeeeccccccCCCHHHHHHHHHHHH
Confidence 78889886643 567788888763 345555555443
|
PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A. |
| >KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=149.53 Aligned_cols=121 Identities=22% Similarity=0.278 Sum_probs=100.1
Q ss_pred CCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCC
Q 005021 191 TPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDN 270 (719)
Q Consensus 191 ~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN 270 (719)
.+......|.+|.+++++.|+|+|.||++ .+.+.+++.|||+.++|++|||+|+|..|+|| +||||+||
T Consensus 157 ~k~FyGGnGIVGAQiPLGaGia~A~kY~~----------~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP-~IFvCENN 225 (394)
T KOG0225|consen 157 AKNFYGGNGIVGAQIPLGAGIAFAQKYNR----------EDAVCFALYGDGAANQGQVFEAFNMAALWKLP-VIFVCENN 225 (394)
T ss_pred cccccCccceeccCCCccccHHHHHHhcc----------CCceEEEEeccccccchhHHHHhhHHHHhCCC-EEEEEccC
Confidence 44567889999999999999999999976 37899999999999999999999999999995 99999999
Q ss_pred CCCcccchhh-hcchhHHHHHhccCceEEEE-----------------eeeecCCCcccc-ccccccCCCCCH
Q 005021 271 HISIDGDTEI-AFTENVDKRFEGLGWHVIWV-----------------TTTIGFGSPNKA-NSYSVHGSALGA 324 (719)
Q Consensus 271 ~~sis~~~~~-~~~~~~~~~~~a~G~~~~~v-----------------~t~~g~g~~~~~-~~~~~h~~~l~~ 324 (719)
+|.+.++... ....+.++|- .| ++-++| .++.|+||..++ +++++||+.+.+
T Consensus 226 ~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSD 296 (394)
T KOG0225|consen 226 HYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSD 296 (394)
T ss_pred CCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCC
Confidence 9999988764 3455677766 33 444555 467899998776 578888886643
|
|
| >cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=136.31 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=87.3
Q ss_pred CccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc-ChhHHHHHHHHhhhcCCC--cEEEEEeC
Q 005021 193 GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLG--KLIAFYDD 269 (719)
Q Consensus 193 gi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~-~eG~~~EAln~A~~~~L~--nli~ivdd 269 (719)
.+....+|+|.++++|+|.|+|.++++.. .+..+..++|++|||++ .+|.+||+||+|+.|+|+ ++|+||+|
T Consensus 107 ~l~~npS~l~~~~pva~G~A~A~k~~~~~-----~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveN 181 (265)
T cd02016 107 SLAPNPSHLEAVNPVVMGKTRAKQDYRGD-----GERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVN 181 (265)
T ss_pred EecCCCcccccccCeehhHHHHHHHhcCC-----ccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEe
Confidence 34556789999999999999999998521 01136789999999996 699999999999999995 49999999
Q ss_pred CCCCcccchhhh-cchhHHHHHhccCceEEEE
Q 005021 270 NHISIDGDTEIA-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 270 N~~sis~~~~~~-~~~~~~~~~~a~G~~~~~v 300 (719)
|+|+++++.... ....+.++.++||.+++.|
T Consensus 182 Nq~g~sT~~~~~~~~~~~~~~a~~~gip~~~V 213 (265)
T cd02016 182 NQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHV 213 (265)
T ss_pred CCEEEEecHHHhcccccHHHHHeecCCCEEEE
Confidence 999999998654 4566899999999999998
|
OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle. |
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-11 Score=140.68 Aligned_cols=231 Identities=18% Similarity=0.162 Sum_probs=162.7
Q ss_pred ccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhh--hcCCEEEEEecCCCccCCCCCCCCChhhhhHH
Q 005021 461 RFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISAL--CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASF 538 (719)
Q Consensus 461 d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~--~~~pV~~v~~~~g~g~g~dG~THq~~edia~l 538 (719)
.....|..++.+|.|-|..| .|.+++|=..=+.++.|++...++ ...|++++.. ++. | -++|+....|..+.
T Consensus 50 ~~~~~E~~a~~~~~GAs~aG--~ra~t~ts~~Gl~~~~e~l~~~~~~g~~~~iV~~~~-~~~--g-p~~~~~~q~d~~~~ 123 (595)
T TIGR03336 50 EWSVNEKVAVEVAAGAAWSG--LRAFCTMKHVGLNVAADPLMTLAYTGVKGGLVVVVA-DDP--S-MHSSQNEQDTRHYA 123 (595)
T ss_pred EECcCHHHHHHHHHHHHhcC--cceEEEccCCchhhhHHHhhhhhhhcCcCceEEEEc-cCC--C-CccchhhHhHHHHH
Confidence 33458999999999999999 599999877778899999877654 3677777763 343 3 24788778887766
Q ss_pred cCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC------CCC--CCCCC-C-------Cc--ccc-c-----
Q 005021 539 RAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSR------QKL--PHLAG-T-------SI--DGV-E----- 591 (719)
Q Consensus 539 r~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r------~~~--~~~~~-~-------~~--~~~-~----- 591 (719)
+. -++.|+.|+|.+|+..+...|++ +..-|+++++.. +.+ +..+. . +. ... +
T Consensus 124 ~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (595)
T TIGR03336 124 KF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIARV 202 (595)
T ss_pred Hh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhHHH
Confidence 65 47789999999999998887763 257899998632 111 00000 0 00 000 0
Q ss_pred ---------------ccc--EEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhh
Q 005021 592 ---------------KGA--YIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKE 654 (719)
Q Consensus 592 ---------------~G~--~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~ 654 (719)
... +.... +++.|++||++|+++..+++++++| |+++.|+++++++|||++.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~i~--- 273 (595)
T TIGR03336 203 RHKKLLSKQHKLREELNESPLNRLE---INGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGLVE--- 273 (595)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceec---cCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHHHH---
Confidence 000 11111 1257999999999999999987765 999999999999999998764
Q ss_pred hhccCCCceEEEEccccccCchhhh----c---CCceEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 005021 655 SVLPAAVSARVSIEAGSTFGWEKIV----G---SKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKE 717 (719)
Q Consensus 655 sv~~~~~~~vvvvE~~~~~G~~~~~----~---~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~ 717 (719)
.+++.. +.+||+|++.. +++..+ . .++.++|+ |.|++ +..+||++.|.+++++
T Consensus 274 ~~~~~~-~~vivvEe~~~-~~~~~~~~~~~~~~~~v~~~G~~d~fi~--------~~~~Ld~~~i~~~i~~ 334 (595)
T TIGR03336 274 EFLSGV-EEVLVVEELEP-VVEEQVKALAGTAGLNIKVHGKEDGFLP--------REGELNPDIVVNALAK 334 (595)
T ss_pred HHHhcC-CeEEEEeCCcc-HHHHHHHHHHHhcCCCeEEecccCCccC--------cccCcCHHHHHHHHHH
Confidence 334333 34799999983 443321 1 14578899 78887 5679999999999875
|
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. |
| >KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-12 Score=133.65 Aligned_cols=96 Identities=26% Similarity=0.281 Sum_probs=84.8
Q ss_pred cccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCc
Q 005021 195 EVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (719)
Q Consensus 195 ~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~si 274 (719)
...+.++.++|++|+|.|+|.|+... .+..+||++|||+.+||.+|-|+|+|+..+- ++||||-||+|+|
T Consensus 189 ~tissplatqlpqAvGaaYa~k~~~~---------nnac~V~yfGdG~aSEGD~HA~~NfAAtle~-Pvif~CRNNG~AI 258 (432)
T KOG1182|consen 189 VTISSPLATQLPQAVGAAYALKMRKK---------NNACAVTYFGDGAASEGDAHAAFNFAATLEC-PVIFFCRNNGWAI 258 (432)
T ss_pred EEecchhhhccchhhhhhhhhhhccc---------CCeEEEEEecCCcccccchhhhhhHHHHhCC-CEEEEEcCCCeee
Confidence 34567899999999999999997642 3579999999999999999999999999996 5999999999999
Q ss_pred ccchhh-hcchhHHHHHhccCceEEEE
Q 005021 275 DGDTEI-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 275 s~~~~~-~~~~~~~~~~~a~G~~~~~v 300 (719)
|++++. +...-+..+-.+||+..|+|
T Consensus 259 STptseQyr~DGIa~kG~aYGi~sIRV 285 (432)
T KOG1182|consen 259 STPTSEQYRGDGIAVKGPAYGIRSIRV 285 (432)
T ss_pred ccccHHHhcCCceEEeccccceEEEEe
Confidence 999975 44566888889999999999
|
|
| >PRK07119 2-ketoisovalerate ferredoxin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=126.92 Aligned_cols=202 Identities=16% Similarity=0.119 Sum_probs=146.3
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia 536 (719)
..|+. .-.|..++++|.|.|..| .|.++.|=...+.++++.|-..+...+|++++.. .+.+.+ -|.|+....|+-
T Consensus 49 ~~~vq-~E~E~aA~~~a~GAs~aG--~Ra~taTSg~Gl~lm~E~l~~a~~~e~P~v~v~v-~R~~p~-~g~t~~eq~D~~ 123 (352)
T PRK07119 49 GVFVQ-AESEVAAINMVYGAAATG--KRVMTSSSSPGISLKQEGISYLAGAELPCVIVNI-MRGGPG-LGNIQPSQGDYF 123 (352)
T ss_pred CEEEe-eCcHHHHHHHHHHHHhhC--CCEEeecCcchHHHHHHHHHHHHHccCCEEEEEe-ccCCCC-CCCCcchhHHHH
Confidence 44555 678999999999999999 5999999899999999999999999999777763 344433 345777777876
Q ss_pred HHcC-----CCCeEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEcC------CCC--CC---CCCCCcccccccc---
Q 005021 537 SFRA-----MPNILMLRPADGNETAGAYKVAVAN---RKRPSILALSR------QKL--PH---LAGTSIDGVEKGA--- 594 (719)
Q Consensus 537 ~lr~-----iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~irl~r------~~~--~~---~~~~~~~~~~~G~--- 594 (719)
+.+. -=++.|+.|+|.+|+..+...|.+- ..-|++++... +.+ +. +..........|.
T Consensus 124 ~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 203 (352)
T PRK07119 124 QAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLPPKDWAVTGTKGR 203 (352)
T ss_pred HHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccCCCCCccCCCCCC
Confidence 6532 2248899999999999988877632 46799998632 111 11 0000000001110
Q ss_pred -------------------------E----------EEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEec
Q 005021 595 -------------------------Y----------IISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSF 639 (719)
Q Consensus 595 -------------------------~----------~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~ 639 (719)
+ ..... ++.|++||++|+++..|++|++.|+++|+++.||++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~---~dad~~iva~Gs~~~~a~eA~~~L~~~Gi~v~vi~~ 280 (352)
T PRK07119 204 RKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNT---EDAELVLVAYGTSARIAKSAVDMAREEGIKVGLFRP 280 (352)
T ss_pred ceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecC---CCCCEEEEEcCccHHHHHHHHHHHHHcCCeEEEEee
Confidence 0 11111 257999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHhhhhhccCCCceEEEEccc
Q 005021 640 VSWELFDEQSDAYKESVLPAAVSARVSIEAG 670 (719)
Q Consensus 640 ~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~ 670 (719)
++++|||.+.+. + .++.. +.++|+|..
T Consensus 281 ~~l~Pfp~~~i~--~-~l~~~-k~VivvE~n 307 (352)
T PRK07119 281 ITLWPFPEKALE--E-LADKG-KGFLSVEMS 307 (352)
T ss_pred ceecCCCHHHHH--H-HHhCC-CEEEEEeCC
Confidence 999999998764 2 33333 346999998
|
|
| >cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-10 Score=111.18 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=98.3
Q ss_pred CCCCCccccccccchHHHHHHHHHhcCCCCccEEEe-hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCCh
Q 005021 454 TPEERNVRFGVREHGMGAICNGIALHSPGLIPYCAT-FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPI 532 (719)
Q Consensus 454 ~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~-y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ 532 (719)
+.|++.+..++.|++++++|.|+|+.|. +|++.+ +.+|+.+++++|...+..++||+++.++.+. .+.++.+||.+
T Consensus 32 ~~~~~~~~~~~~E~~a~~~A~G~a~~~~--~~v~~~~~gpg~~~~~~~l~~a~~~~~Pvl~i~~~~~~-~~~~~~~~q~~ 108 (154)
T cd06586 32 EGDKRIIDTVIHELGAAGAAAGYARAGG--PPVVIVTSGTGLLNAINGLADAAAEHLPVVFLIGARGI-SAQAKQTFQSM 108 (154)
T ss_pred ccCCceEEeeCCHHHHHHHHHHHHHhhC--CEEEEEcCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCh-hhhccCccccc
Confidence 4689999999999999999999999994 888764 6999999999999888889999999854443 34457789999
Q ss_pred hhhhHHcCCCCeEEEeeCCHHHHHHHHH---HHHHcCCCcEEEEEcC
Q 005021 533 EHLASFRAMPNILMLRPADGNETAGAYK---VAVANRKRPSILALSR 576 (719)
Q Consensus 533 edia~lr~iPnl~V~~P~d~~e~~~~l~---~a~~~~~~P~~irl~r 576 (719)
+++++++.+|++.+..|++.++...+.+ .+.. ..+|++|++|+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~-~~gPv~l~ip~ 154 (154)
T cd06586 109 FDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYA-SQGPVVVRLPR 154 (154)
T ss_pred CHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhc-CCCCEEEEccC
Confidence 9999999999999999988766654443 2333 47899999874
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca |
| >PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=120.49 Aligned_cols=205 Identities=20% Similarity=0.205 Sum_probs=146.1
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia 536 (719)
..|+.+- .|..++++|.|.|..|. |.++.|=+.=+.+|.+++-..+...+|++++.. ++.|.+..-+|+....|+-
T Consensus 49 ~~~vq~E-~E~aA~~~a~GAs~aG~--Ra~TaTSg~Gl~lm~E~~~~a~~~e~P~Viv~~-~R~gp~tg~p~~~~q~D~~ 124 (376)
T PRK08659 49 GVFIQME-DEIASMAAVIGASWAGA--KAMTATSGPGFSLMQENIGYAAMTETPCVIVNV-QRGGPSTGQPTKPAQGDMM 124 (376)
T ss_pred CEEEEeC-chHHHHHHHHhHHhhCC--CeEeecCCCcHHHHHHHHHHHHHcCCCEEEEEe-ecCCCCCCCCCCcCcHHHH
Confidence 3455655 89999999999999994 999998888888999999888888999888763 4555333447887777876
Q ss_pred HHc-----CCCCeEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEcC------CCC--CC---CC-------C------
Q 005021 537 SFR-----AMPNILMLRPADGNETAGAYKVAVAN---RKRPSILALSR------QKL--PH---LA-------G------ 584 (719)
Q Consensus 537 ~lr-----~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~irl~r------~~~--~~---~~-------~------ 584 (719)
..+ .+| ..|+.|+|.+|+..+...|.+- ..-|++++... ..+ +. +. .
T Consensus 125 ~~~~~~hgd~~-~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 203 (376)
T PRK08659 125 QARWGTHGDHP-IIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPKVPPEAY 203 (376)
T ss_pred HHhcccCCCcC-cEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCCCCcccc
Confidence 666 333 4799999999999988877632 46799998631 111 00 00 0
Q ss_pred CCc----cccc----cc--cE---------------------------------------EEecCCCCCCCCEEEEEeCH
Q 005021 585 TSI----DGVE----KG--AY---------------------------------------IISDNSSGNKPDVILIGTGS 615 (719)
Q Consensus 585 ~~~----~~~~----~G--~~---------------------------------------~i~~~~~~~g~dvtIva~G~ 615 (719)
... ..++ .| .. ...+.-...+.|++||++|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad~~iv~~Gs 283 (376)
T PRK08659 204 KPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEVVVVAYGS 283 (376)
T ss_pred CCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCCEEEEEeCc
Confidence 000 0000 01 11 00000001257899999999
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccc
Q 005021 616 ELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAG 670 (719)
Q Consensus 616 ~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~ 670 (719)
+...+++|++.|+++|+++.++++++++||+.+.+. ..++.. +.|+|+|++
T Consensus 284 ~~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~---~~~~~~-k~VivvEe~ 334 (376)
T PRK08659 284 VARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIR---ELAKKV-KAIVVPEMN 334 (376)
T ss_pred cHHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHH---HHHhcC-CEEEEEeCC
Confidence 999999999999999999999999999999998654 344433 447999999
|
|
| >cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-10 Score=111.41 Aligned_cols=91 Identities=22% Similarity=0.278 Sum_probs=68.6
Q ss_pred ccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCC
Q 005021 194 IEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHIS 273 (719)
Q Consensus 194 i~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~s 273 (719)
+....|++|.+++.|+|++++.+ +.+|||++|||+++. .+++++.|..++++-+++|+||+.+.
T Consensus 41 ~~~~~g~~G~~~~~a~Gaa~a~~--------------~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~ 104 (168)
T cd00568 41 TSTGFGAMGYGLPAAIGAALAAP--------------DRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYG 104 (168)
T ss_pred eCCCchhhhhhHHHHHHHHHhCC--------------CCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccH
Confidence 34567999999999999999853 568999999999998 67999999999986444444544444
Q ss_pred cccchh----------h-hcchhHHHHHhccCceEEEE
Q 005021 274 IDGDTE----------I-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 274 is~~~~----------~-~~~~~~~~~~~a~G~~~~~v 300 (719)
+..... . ....++.+.++++||++++|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v 142 (168)
T cd00568 105 TIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRV 142 (168)
T ss_pred HHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCeEEEE
Confidence 433221 1 12347899999999998775
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. |
| >PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.7e-09 Score=114.73 Aligned_cols=199 Identities=17% Similarity=0.111 Sum_probs=143.9
Q ss_pred ccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHc-----
Q 005021 465 REHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR----- 539 (719)
Q Consensus 465 aE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr----- 539 (719)
.|..++++|.|.|..| .|.++.|=..=+.+|.++|-..+...+|++++. ..+.|.+..-||.....|+...+
T Consensus 55 ~E~aA~~~a~GAs~aG--~Ra~taTSg~G~~lm~E~~~~a~~~e~P~V~~~-~~R~GpstG~p~~~~q~D~~~~~~~~hg 131 (375)
T PRK09627 55 DEISGISVALGASMSG--VKSMTASSGPGISLKAEQIGLGFIAEIPLVIVN-VMRGGPSTGLPTRVAQGDVNQAKNPTHG 131 (375)
T ss_pred CHHHHHHHHHHHHhhC--CCEEeecCCchHHHHhhHHHHHHhccCCEEEEE-eccCCCcCCCCCccchHHHHHHhcCCCC
Confidence 8999999999999999 599999888888899999998999999988765 35555443458888788887777
Q ss_pred CCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC------CCC--CC---CC----------CC--Ccccccc-
Q 005021 540 AMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSR------QKL--PH---LA----------GT--SIDGVEK- 592 (719)
Q Consensus 540 ~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r------~~~--~~---~~----------~~--~~~~~~~- 592 (719)
-.|.+ |++|+|.+|+..+...|.+ +..-|++++... ..+ +. +. .. .......
T Consensus 132 d~~~i-vl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (375)
T PRK09627 132 DFKSI-ALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRKEFDGDKKDYKPYGVA 210 (375)
T ss_pred CcCcE-EEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhccccccccccccCCcccccCCccC
Confidence 66777 9999999999998887763 246799998632 111 00 10 00 0000000
Q ss_pred -------------ccEE------------------------------------E--ecCCCCCCCCEEEEEeCHhHHHHH
Q 005021 593 -------------GAYI------------------------------------I--SDNSSGNKPDVILIGTGSELEIAA 621 (719)
Q Consensus 593 -------------G~~~------------------------------------i--~~~~~~~g~dvtIva~G~~v~~al 621 (719)
+.+. + ....+.+..|++||++|+....+.
T Consensus 211 ~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~~dAd~~IV~~GSt~~~~k 290 (375)
T PRK09627 211 QDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYMLDDAEILIIAYGSVSLSAK 290 (375)
T ss_pred CCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCCCCCCEEEEEeCCCHHHHH
Confidence 0000 0 000001246899999999999999
Q ss_pred HHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcccc
Q 005021 622 KAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGS 671 (719)
Q Consensus 622 ~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~ 671 (719)
+|.+.|+++|+++.++.++++.||..+.+. ..++.. +.++|+|.+.
T Consensus 291 eAv~~lr~~G~kvg~l~~~~~~PfP~~~i~---~~l~~~-k~viVvE~n~ 336 (375)
T PRK09627 291 EAIKRLREEGIKVGLFRPITLWPSPAKKLK---EIGDKF-EKILVIELNM 336 (375)
T ss_pred HHHHHHHhcCCeEEEEEeCeEECCCHHHHH---HHHhcC-CEEEEEcCCh
Confidence 999999999999999999999999987553 344433 3469999986
|
|
| >PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-08 Score=113.95 Aligned_cols=201 Identities=18% Similarity=0.139 Sum_probs=145.5
Q ss_pred ccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCe
Q 005021 465 REHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNI 544 (719)
Q Consensus 465 aE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl 544 (719)
.|..+++++.|.|..| .|.+++|=+.=+.++.|.|...+...+|++++.. .|.+.+ .-++|....|+...| --++
T Consensus 64 ~E~~A~~~~~GAs~aG--aRa~TaTS~~Gl~lm~E~l~~aa~~~~P~V~~~~-~R~~~~-~~~i~~d~~D~~~~r-~~g~ 138 (407)
T PRK09622 64 SEHAAMSACVGAAAAG--GRVATATSSQGLALMVEVLYQASGMRLPIVLNLV-NRALAA-PLNVNGDHSDMYLSR-DSGW 138 (407)
T ss_pred cHHHHHHHHHHHHhhC--cCEEeecCcchHHHHhhHHHHHHHhhCCEEEEEe-ccccCC-CcCCCchHHHHHHHh-cCCe
Confidence 8999999999999999 4999988888888999999999999999777763 343322 367788788877766 4679
Q ss_pred EEEeeCCHHHHHHHHHHHHHc---C--CCcEEEEEcC-------CCCCCCCCC----------Cc-------ccccccc-
Q 005021 545 LMLRPADGNETAGAYKVAVAN---R--KRPSILALSR-------QKLPHLAGT----------SI-------DGVEKGA- 594 (719)
Q Consensus 545 ~V~~P~d~~e~~~~l~~a~~~---~--~~P~~irl~r-------~~~~~~~~~----------~~-------~~~~~G~- 594 (719)
.+++|+|.+|+..+...|.+- . .-|+++++.- +.+.....+ +. .+...|.
T Consensus 139 ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 218 (407)
T PRK09622 139 ISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKNSMLDFDKPVTYGAQ 218 (407)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCcccccccccCCCCCccCCCC
Confidence 999999999999998887642 2 5799998632 111100000 00 0000010
Q ss_pred --------------------------------------EEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEE
Q 005021 595 --------------------------------------YIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRV 636 (719)
Q Consensus 595 --------------------------------------~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~V 636 (719)
|...+..+.++.|++||++|+++..+++|++.|+++|+++.|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~G~kvgv 298 (407)
T PRK09622 219 TEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIVAAKEMRKEGIKAGV 298 (407)
T ss_pred CCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHHHHHHHHhCCCCeEE
Confidence 000010001257899999999999999999999999999999
Q ss_pred EecCChhhHHHHHHHhhhhhccCCCceEEEEccccccC
Q 005021 637 VSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFG 674 (719)
Q Consensus 637 Id~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G 674 (719)
|++++++|||.+.+. .+++.. +.++|+|++...|
T Consensus 299 i~~r~~~Pfp~~~l~---~~l~~~-k~VvVvE~~~~~G 332 (407)
T PRK09622 299 ATIRVLRPFPYERLG---QALKNL-KALAILDRSSPAG 332 (407)
T ss_pred EEeeEhhhCCHHHHH---HHHhcC-CEEEEEeCCCCCC
Confidence 999999999998664 334433 3479999997755
|
|
| >PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-07 Score=110.99 Aligned_cols=537 Identities=17% Similarity=0.188 Sum_probs=283.6
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCChhHHhhhhhcCCCCC---
Q 005021 107 NSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTP--- 183 (719)
Q Consensus 107 ~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~~~r~~~~~~~--- 183 (719)
-.|+---+|=..|-++.|...++.--.+ ..-|-+++...|..-+ -.+.-..|. +..+ -|+.+.|...
T Consensus 516 yvGqkRFslEG~Es~iplld~~~~~aa~----~~l~evvigm~HRGRL-NVLani~gK---~y~q--iF~EFegn~dp~~ 585 (1228)
T PRK12270 516 YVGQKRFSLEGGESLIPLLDAVLDQAAE----HGLDEVVIGMAHRGRL-NVLANIVGK---PYSQ--IFREFEGNLDPRS 585 (1228)
T ss_pred cccceeeeecchhhHHHHHHHHHHHHHh----cCCceEEecccccchH-HHHHHHhcC---CHHH--HHHHhcCCCCccc
Confidence 4566665666666666666555542221 2567899988888622 222334453 3333 2444433221
Q ss_pred --CCCCCC---CCCCcc-------------ccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccc-cC
Q 005021 184 --GHPENF---ETPGIE-------------VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGC-QM 244 (719)
Q Consensus 184 --g~p~~~---~~pgi~-------------~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~-~~ 244 (719)
|--+.. ...|.. ..-.||=.==+..-|++.|..-.- ++. .......-+++-||++ ..
T Consensus 586 ~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleGivRakQd~l---~~g-~~~~~vlpi~~hGdaafag 661 (1228)
T PRK12270 586 AQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEGIVRAKQDRL---DKG-EEGFTVLPILLHGDAAFAG 661 (1228)
T ss_pred cCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhhhhhhhhhhh---ccc-ccCCceeEEEEeccccccC
Confidence 111100 011111 112233333366778888765321 211 1112456788999999 57
Q ss_pred hhHHHHHHHHhhhcCCC--cEEEEEeCCCCCcccchhhh-cchhHHHHHhccCceEEEEe-----------------eee
Q 005021 245 EGIANEASSLAGHLGLG--KLIAFYDDNHISIDGDTEIA-FTENVDKRFEGLGWHVIWVT-----------------TTI 304 (719)
Q Consensus 245 eG~~~EAln~A~~~~L~--nli~ivddN~~sis~~~~~~-~~~~~~~~~~a~G~~~~~v~-----------------t~~ 304 (719)
+|+++|+||++..++++ -.|.||.||++...+..... ...-..+..++++.+++.|+ -..
T Consensus 662 QGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~ 741 (1228)
T PRK12270 662 QGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQR 741 (1228)
T ss_pred CchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999973 38999999999998776532 22234455567888888881 112
Q ss_pred cCCCcccc-ccccccCC------CCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHH-HhhcchhHHHH-----------H
Q 005021 305 GFGSPNKA-NSYSVHGS------ALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGATLEAE-----------W 365 (719)
Q Consensus 305 g~g~~~~~-~~~~~h~~------~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-~~~~g~~~~~~-----------~ 365 (719)
+++..+++ ..+++||+ .+.+.....++++... +.+.|.+ +..+|-.-+++ +
T Consensus 742 f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~~s----------vrk~yte~Ligrgdit~ee~e~~l~dy~~~L 811 (1228)
T PRK12270 742 FHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRS----------VRKLYTEALIGRGDITVEEAEQALRDYQGQL 811 (1228)
T ss_pred cCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhcch----------HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 23333332 24555655 2332222222222110 2233332 22222111111 1
Q ss_pred HHHHhhhhh--cCchh-hh-------------------hhhhhhc--CCCCCcccccCCCCCCC-CCcchH-H-----HH
Q 005021 366 NAKFAEYEK--KYPEE-AA-------------------EFKSISS--GQLPAGWEKALPTYTPE-SPAEAT-R-----NL 414 (719)
Q Consensus 366 ~~~~~~~~~--~~p~~-~~-------------------~~~~~~~--g~~p~~~~~~~~~~~~~-~~~~s~-r-----~a 414 (719)
.+.+.+-++ +.|.. .. .+..+.. -.+|+.|+. .|+...- .....| + =+
T Consensus 812 e~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~-Hpkl~~~l~~R~~m~~~g~iDWa 890 (1228)
T PRK12270 812 ERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTV-HPKLKPLLEKRREMAREGGIDWA 890 (1228)
T ss_pred HHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCCcc-ChhhHHHHHHHHHHHhcCCccHH
Confidence 111111110 01100 00 0000000 012333321 1111000 000000 0 03
Q ss_pred HHHHH--HHHHhhCCceEEEecCCCCCccccc-------------cccccCcccCCCCCccccccccchHHHHHHHHHhc
Q 005021 415 SQTCL--NALAKTLPGLLGGSADLASSNMTLL-------------KMFGDFQKDTPEERNVRFGVREHGMGAICNGIALH 479 (719)
Q Consensus 415 ~~~~L--~~l~~~dp~iv~~saDl~~s~~~~~-------------~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~ 479 (719)
|++.| ..|+-+.-.|-..+.|...++++-- .-+..+..+.-+=-++|..++|-+++|+=-|.+..
T Consensus 891 ~gEllAfGsLl~eG~~VRL~GQDsrRGTF~QRHavl~D~~tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~GFEYGYSv~ 970 (1228)
T PRK12270 891 FGELLAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLIDRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMGFEYGYSVE 970 (1228)
T ss_pred HHHHHHHHHHHhcCceeeeeccccCCcceeeeeEEEecCCCCcccCcHhhcCCCcceEEEecchhhHHHhhccceeeecC
Confidence 55544 3566666678888899866655320 00111111111124579999999999999999988
Q ss_pred CCCCccEE-EehhhhH---HhHHHHHHHHhh----hcCCEEEEEecCCCccCCCCCCCCC--hhhhhHHcCCCCeEEEee
Q 005021 480 SPGLIPYC-ATFFVFT---DYMRAAIRISAL----CEAGVIYVMTHDSIGLGEDGPTHQP--IEHLASFRAMPNILMLRP 549 (719)
Q Consensus 480 G~~~~Pv~-~~y~~F~---~ra~dqir~~a~----~~~pV~~v~~~~g~g~g~dG~THq~--~edia~lr~iPnl~V~~P 549 (719)
..--..++ ..|.+|. |-..|+...++. |...|++...| |+-..||-|.+ +|-.--|++=.||+|..|
T Consensus 971 ~pdaLVlWEAQFGDF~NGAQtiIDefIss~e~KWgQ~S~vvlLLPH---GyEGQGPdHSSaRiERfLqlcAe~nm~Va~p 1047 (1228)
T PRK12270 971 RPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVLLLPH---GYEGQGPDHSSARIERFLQLCAEGNMTVAQP 1047 (1228)
T ss_pred CCcceeeehhhhcccccchHHHHHHHHhhhHhhhccccceEEEccC---CcCCCCCCcchHHHHHHHHhhccCCeEEEcc
Confidence 74122333 4677776 355666444432 56778888855 34457899976 454445778899999999
Q ss_pred CCHHHHHHHHH-HHHHcCCCcEEEEEcCCCCCCCC-CCCccccccccEE-Eec-CCCCCC--CCEEEEEeCHhHHHHHHH
Q 005021 550 ADGNETAGAYK-VAVANRKRPSILALSRQKLPHLA-GTSIDGVEKGAYI-ISD-NSSGNK--PDVILIGTGSELEIAAKA 623 (719)
Q Consensus 550 ~d~~e~~~~l~-~a~~~~~~P~~irl~r~~~~~~~-~~~~~~~~~G~~~-i~~-~~~~~g--~dvtIva~G~~v~~al~A 623 (719)
+++.....+|+ .|+....+|.++..||+.+..-. ..+.+.|.-|+++ |+. .....+ -+=+|+++|-.....++.
T Consensus 1048 sTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~S~vedFT~g~F~pVi~D~~~~~~~~V~RVlLcSGKvYYdL~a~ 1127 (1228)
T PRK12270 1048 STPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSDVEDFTEGKFRPVIDDPTVDDGAKVRRVLLCSGKLYYDLAAR 1127 (1228)
T ss_pred CChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhcCCHHHhccCCceecCCCCCCCCccceeEEEEEcchhHHHHHHH
Confidence 99999999998 55655678999999987653211 1123345556654 222 111111 234688889988766654
Q ss_pred HHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhc--cCCCceEEEEccccccC-c
Q 005021 624 AEELRKGGKAVRVVSFVSWELFDEQSDAYKESVL--PAAVSARVSIEAGSTFG-W 675 (719)
Q Consensus 624 a~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~--~~~~~~vvvvE~~~~~G-~ 675 (719)
.+. ...-++.||-+-.+.||..+.+. +.+. +....++.+-||....| |
T Consensus 1128 R~k--~~~~d~AIvRvEQLyP~p~~~l~--~~l~~ypna~e~~wvQeEP~NqGaw 1178 (1228)
T PRK12270 1128 REK--DGRDDTAIVRVEQLYPLPRAELR--EALARYPNATEVVWVQEEPANQGAW 1178 (1228)
T ss_pred HHh--cCCCceEEEEhhhhCCCCHHHHH--HHHHhCCCcceeEEeccCcccCCCc
Confidence 332 23456999999999999876543 2221 22224456667766556 5
|
|
| >cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.6e-09 Score=101.85 Aligned_cols=88 Identities=23% Similarity=0.169 Sum_probs=70.8
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.+++.|+|.++|.+ +++|||++|||+++. ..+.+..|.+++|+.+++|+|||++++..
T Consensus 46 ~~g~mG~~lp~AiGa~la~~--------------~~~vv~i~GDG~f~~--~~~el~ta~~~~lpv~ivv~NN~~~~~~~ 109 (172)
T cd02004 46 TFGTLGVGLGYAIAAALARP--------------DKRVVLVEGDGAFGF--SGMELETAVRYNLPIVVVVGNNGGWYQGL 109 (172)
T ss_pred CCCcccchHHHHHHHHHhCC--------------CCeEEEEEcchhhcC--CHHHHHHHHHcCCCEEEEEEECcccccch
Confidence 34779999999999998742 578999999999995 35778899999998888888999998865
Q ss_pred chhh------------hcchhHHHHHhccCceEEEE
Q 005021 277 DTEI------------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~~------------~~~~~~~~~~~a~G~~~~~v 300 (719)
.... ....+..+..++||++..+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v 145 (172)
T cd02004 110 DGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELV 145 (172)
T ss_pred hhhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEE
Confidence 4321 12457889999999988776
|
Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. |
| >PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.9e-07 Score=100.79 Aligned_cols=202 Identities=15% Similarity=0.162 Sum_probs=146.6
Q ss_pred cccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCC
Q 005021 464 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN 543 (719)
Q Consensus 464 IaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPn 543 (719)
=.|..++++|.|.|..| .|.++.|=+.=+.+|.|+|...+...+|++++.. .|.+.+ .++||....|+.+.+. -+
T Consensus 56 E~E~aA~~~aiGAs~aG--aRa~TaTSg~Gl~lm~E~l~~aa~~~lPiVi~~~-~R~~p~-~~~~~~~q~D~~~~~d-~g 130 (390)
T PRK08366 56 ESEHSAMAACIGASAAG--ARAFTATSAQGLALMHEMLHWAAGARLPIVMVDV-NRAMAP-PWSVWDDQTDSLAQRD-TG 130 (390)
T ss_pred CCHHHHHHHHHHHHhhC--CCeEeeeCcccHHHHhhHHHHHHhcCCCEEEEEe-ccCCCC-CCCCcchhhHHHHHhh-cC
Confidence 37999999999999999 5999999888888999999999999999887762 555543 5789888889776665 47
Q ss_pred eEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC-------CCC--CC-------CC---C-----CCccccc-----
Q 005021 544 ILMLRPADGNETAGAYKVAVA---NRKRPSILALSR-------QKL--PH-------LA---G-----TSIDGVE----- 591 (719)
Q Consensus 544 l~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r-------~~~--~~-------~~---~-----~~~~~~~----- 591 (719)
..++.|+|.+|+..+...|.+ +..-|+++++.. ..+ +. ++ . ....++.
T Consensus 131 ~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~p~s~~~~~ 210 (390)
T PRK08366 131 WMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLADFDNPISVGALA 210 (390)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCCCCCCcccccCC
Confidence 899999999999998877763 246899998632 110 00 00 0 0000100
Q ss_pred ---------------------------------cc-cEE-EecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEE
Q 005021 592 ---------------------------------KG-AYI-ISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRV 636 (719)
Q Consensus 592 ---------------------------------~G-~~~-i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~V 636 (719)
.| .|. ..+.-..+..|++||++|+....+.+|.+.|+++|+++.+
T Consensus 211 ~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~ 290 (390)
T PRK08366 211 TPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGY 290 (390)
T ss_pred CCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceee
Confidence 00 000 0010000146899999999999999999999999999999
Q ss_pred EecCChhhHHHHHHHhhhhhccCCCceEEEEccccccC
Q 005021 637 VSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFG 674 (719)
Q Consensus 637 Id~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G 674 (719)
+.++++.||..+.+. .+++.. +.|+++|.....|
T Consensus 291 l~i~~~~PfP~~~i~---~~l~~~-k~ViVvE~n~~~G 324 (390)
T PRK08366 291 AKVRWFRPFPKEELY---EIAESV-KGIAVLDRNFSFG 324 (390)
T ss_pred EEEeeecCCCHHHHH---HHHhcC-CEEEEEeCCCCCC
Confidence 999999999997653 344443 4469999987644
|
|
| >TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.72 E-value=4e-07 Score=105.69 Aligned_cols=212 Identities=20% Similarity=0.148 Sum_probs=150.0
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia 536 (719)
+-.+-..=.|..++++|.|.|..| .|.++.|=..=+.+|.|.|...+...+|++++. .++.|.+..-+|+....|+-
T Consensus 237 ~~~~~q~E~E~aA~~~a~GAs~aG--~Ra~taTSg~Gl~lm~E~l~~a~~~~~P~Vi~~-~~R~gpstg~~t~~eq~D~~ 313 (562)
T TIGR03710 237 GVVVVQAEDEIAAINMAIGASYAG--ARAMTATSGPGFALMTEALGLAGMTETPLVIVD-VQRGGPSTGLPTKTEQSDLL 313 (562)
T ss_pred CcEEEeeccHHHHHHHHHhHHhcC--CceeecCCCCChhHhHHHHhHHHhccCCEEEEE-cccCCCCCCCCCCccHHHHH
Confidence 344445579999999999999999 599998877778899999987888999988876 46665544457898888987
Q ss_pred HHcCCC----CeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC------CCC--CC---CC---------------
Q 005021 537 SFRAMP----NILMLRPADGNETAGAYKVAVA---NRKRPSILALSR------QKL--PH---LA--------------- 583 (719)
Q Consensus 537 ~lr~iP----nl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r------~~~--~~---~~--------------- 583 (719)
+.+.-- ++.|++|+|.+|+..+...|.+ +..-|++++... ..+ +. +.
T Consensus 314 ~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 393 (562)
T TIGR03710 314 FALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEPEEEYK 393 (562)
T ss_pred HHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccccCCCCCC
Confidence 766432 3789999999999998877763 256799998631 111 00 00
Q ss_pred ----CC-Ccccc-cccc---------------------------------------------EEEecCCCCCCCCEEEEE
Q 005021 584 ----GT-SIDGV-EKGA---------------------------------------------YIISDNSSGNKPDVILIG 612 (719)
Q Consensus 584 ----~~-~~~~~-~~G~---------------------------------------------~~i~~~~~~~g~dvtIva 612 (719)
++ ...+. ..|. ++... ..+.|+.||+
T Consensus 394 ~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~---~~da~~~iv~ 470 (562)
T TIGR03710 394 RYELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYG---DEDADVLVIG 470 (562)
T ss_pred CCCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeec---CCCCCEEEEE
Confidence 00 00000 0110 00000 1146799999
Q ss_pred eCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhh
Q 005021 613 TGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKI 678 (719)
Q Consensus 613 ~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~ 678 (719)
+|++...+.+|.+.|+++|+++.++.++++.||..+.+. ..++.. +.|+|+|.....-+...
T Consensus 471 ~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~---~~l~~~-k~v~VvE~n~~Gql~~~ 532 (562)
T TIGR03710 471 WGSTYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELA---ELLEGA-KKVIVVEQNATGQLAKL 532 (562)
T ss_pred eCCCHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHH---HHHhcC-CEEEEEccChhhhHHHH
Confidence 999999999999999999999999999999999987553 344433 34699999855334443
|
The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions. |
| >PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=8e-07 Score=98.52 Aligned_cols=203 Identities=15% Similarity=0.197 Sum_probs=144.2
Q ss_pred cccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCC
Q 005021 464 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN 543 (719)
Q Consensus 464 IaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPn 543 (719)
=+|..++++|.|.|..| .|.+++|=+.=+.+|.|+|...+...+|++++.. .+ +++.-..+|....|+...|..+
T Consensus 57 EsE~aA~~~~~GAs~aG--aRa~TaTS~~Gl~lm~E~l~~aag~~lP~V~vv~-~R-~~~~p~~i~~d~~D~~~~rd~g- 131 (394)
T PRK08367 57 ESEHSAISACVGASAAG--VRTFTATASQGLALMHEVLFIAAGMRLPIVMAIG-NR-ALSAPINIWNDWQDTISQRDTG- 131 (394)
T ss_pred CCHHHHHHHHHHHHhhC--CCeEeeeccchHHHHhhHHHHHHHccCCEEEEEC-CC-CCCCCCCcCcchHHHHhccccC-
Confidence 47999999999999999 5999999888888999999999999999988872 33 3343336677777866666544
Q ss_pred eEEEeeCCHHHHHHHHHHHHHcC---C--CcEEEEEcCC-------C--CCC---C----CC--------CCccccc---
Q 005021 544 ILMLRPADGNETAGAYKVAVANR---K--RPSILALSRQ-------K--LPH---L----AG--------TSIDGVE--- 591 (719)
Q Consensus 544 l~V~~P~d~~e~~~~l~~a~~~~---~--~P~~irl~r~-------~--~~~---~----~~--------~~~~~~~--- 591 (719)
..++.|+|.+|+..+...|.+-. + -|+++++..- . ++. + +. .+..+..
T Consensus 132 ~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~g~ 211 (394)
T PRK08367 132 WMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHAYLDPARPITQGA 211 (394)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCcccccccccCCCCCcccCC
Confidence 67788999999999888776322 2 5999886321 0 000 0 00 0000000
Q ss_pred -----------------------------------cc-cEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEE
Q 005021 592 -----------------------------------KG-AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVR 635 (719)
Q Consensus 592 -----------------------------------~G-~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~ 635 (719)
.| +|...+.-+....|++||++|+....+.+|.+.|+++|++|.
T Consensus 212 ~~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~keav~~LR~~G~kVG 291 (394)
T PRK08367 212 LAFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEFVDKLREEGYKVG 291 (394)
T ss_pred CCCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCcce
Confidence 11 122222100124799999999999999999999999999999
Q ss_pred EEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCc
Q 005021 636 VVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGW 675 (719)
Q Consensus 636 VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~ 675 (719)
++-++.+.||..+.+. .+++.. +.|+|+|-....|.
T Consensus 292 llri~~~rPFP~~~i~---~~l~~~-k~ViVvE~n~s~g~ 327 (394)
T PRK08367 292 AAKLTVYRPFPVEEIR---ALAKKA-KVLAFLEKNISFGL 327 (394)
T ss_pred eEEEeEecCCCHHHHH---HHHccC-CEEEEEeCCCCCCC
Confidence 9999999999998653 344443 44699999876553
|
|
| >cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.4e-08 Score=97.06 Aligned_cols=88 Identities=17% Similarity=0.224 Sum_probs=70.2
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccCh-hHHHHHHHHhhhcCCCcEEEEEeCCCCCcc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME-GIANEASSLAGHLGLGKLIAFYDDNHISID 275 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~e-G~~~EAln~A~~~~L~nli~ivddN~~sis 275 (719)
..|.+|.|++.|+|+++|.. +++|||++|||+++. | ++.+..|..++++.+++|+|||.+++.
T Consensus 49 ~~g~mG~gl~~AiGa~la~p--------------~~~Vv~i~GDG~f~~~g--~~eL~ta~~~~l~i~vvV~nN~~~g~~ 112 (178)
T cd02008 49 TCTCMGASIGVAIGMAKASE--------------DKKVVAVIGDSTFFHSG--ILGLINAVYNKANITVVILDNRTTAMT 112 (178)
T ss_pred ccccCccHHHHHhhHHhhCC--------------CCCEEEEecChHHhhcc--HHHHHHHHHcCCCEEEEEECCcceecc
Confidence 47899999999999999853 567999999999953 3 688888999999888888999988754
Q ss_pred cchhh----------hcchhHHHHHhccCceEEEE
Q 005021 276 GDTEI----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 276 ~~~~~----------~~~~~~~~~~~a~G~~~~~v 300 (719)
+.... ....++.+.+++|||+...|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 147 (178)
T cd02008 113 GGQPHPGTGKTLTEPTTVIDIEALVRAIGVKRVVV 147 (178)
T ss_pred CCCCCCCCcccccCCCCccCHHHHHHHCCCCEEEe
Confidence 32211 01357899999999998876
|
IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA. |
| >cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.1e-08 Score=95.37 Aligned_cols=86 Identities=27% Similarity=0.271 Sum_probs=66.2
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccch
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~ 278 (719)
|.+|.+++.|+|.++|.+ +.+|||++|||+++.+. ..+..|..++++-+++|+|||+|++....
T Consensus 49 g~mG~~lp~aiGaala~~--------------~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~ 112 (178)
T cd02002 49 GGLGWGLPAAVGAALANP--------------DRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSF 112 (178)
T ss_pred ccccchHHHHHHHHhcCC--------------CCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHH
Confidence 899999999999999742 56899999999998775 68889999998755566666668875421
Q ss_pred hh------------------hcchhHHHHHhccCceEEEE
Q 005021 279 EI------------------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 279 ~~------------------~~~~~~~~~~~a~G~~~~~v 300 (719)
.. ....++.+.+++||++..+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 152 (178)
T cd02002 113 LKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERV 152 (178)
T ss_pred HHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEe
Confidence 10 01246888999999987765
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. |
| >cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.6e-07 Score=92.44 Aligned_cols=86 Identities=22% Similarity=0.322 Sum_probs=62.6
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcE-EEEEeCCCCCc
Q 005021 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKL-IAFYDDNHISI 274 (719)
Q Consensus 196 ~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nl-i~ivddN~~si 274 (719)
+++|++|.+++.|+|+++|.. +..|+|++|||+++- ..+.|..+.+++++|+ ++|+||+++.+
T Consensus 45 ~~~g~mG~~lpaAiGaala~p--------------~~~Vv~i~GDG~f~m--~~~eL~ta~~~~l~~i~ivV~NN~~yg~ 108 (188)
T cd03371 45 LTVGSMGHASQIALGIALARP--------------DRKVVCIDGDGAALM--HMGGLATIGGLAPANLIHIVLNNGAHDS 108 (188)
T ss_pred eecCccccHHHHHHHHHHhCC--------------CCcEEEEeCCcHHHh--hccHHHHHHHcCCCCcEEEEEeCchhhc
Confidence 345999999999999998842 567999999999973 4567888889987665 55555555655
Q ss_pred ccchhh-hcchhHHHHHhccCceE
Q 005021 275 DGDTEI-AFTENVDKRFEGLGWHV 297 (719)
Q Consensus 275 s~~~~~-~~~~~~~~~~~a~G~~~ 297 (719)
...... ....+..+..++||+..
T Consensus 109 ~~~~~~~~~~~d~~~~A~a~G~~~ 132 (188)
T cd03371 109 VGGQPTVSFDVSLPAIAKACGYRA 132 (188)
T ss_pred cCCcCCCCCCCCHHHHHHHcCCce
Confidence 332111 12357888999999875
|
PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors. |
| >PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.9e-06 Score=80.45 Aligned_cols=150 Identities=16% Similarity=0.163 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhhCC-ceEEEecCCCCCcccc--ccccc-cCccc---------CCCCCccccccccchHHHHHHHHHhc
Q 005021 413 NLSQTCLNALAKTLP-GLLGGSADLASSNMTL--LKMFG-DFQKD---------TPEERNVRFGVREHGMGAICNGIALH 479 (719)
Q Consensus 413 ~a~~~~L~~l~~~dp-~iv~~saDl~~s~~~~--~~g~~-~f~~~---------~~p~R~~d~GIaE~~~vg~AaGlA~~ 479 (719)
.++++.|.++++.|| ++-++++|...|+... +..+. .|..+ .-+++-+..-++|+.+.|+..|+.+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 457889999999988 5999999988776542 11111 11100 11345555669999999999999999
Q ss_pred CCCCccEEEehhhhHH---hHHHH-H---HHHh---h-hcCC-EEEEEecCCCccCCCCCCCCChhhhh-HHcCCCC-eE
Q 005021 480 SPGLIPYCATFFVFTD---YMRAA-I---RISA---L-CEAG-VIYVMTHDSIGLGEDGPTHQPIEHLA-SFRAMPN-IL 545 (719)
Q Consensus 480 G~~~~Pv~~~y~~F~~---ra~dq-i---r~~a---~-~~~p-V~~v~~~~g~g~g~dG~THq~~edia-~lr~iPn-l~ 545 (719)
|+ .-++.+|..|+. -|+.| + +... . .+.| +.++.|....--+.+|.|||...-+. ++.-.|+ ++
T Consensus 82 Gr--hglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~~R 159 (179)
T PF03894_consen 82 GR--HGLFASYEAFAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDVVR 159 (179)
T ss_dssp T---EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-EE
T ss_pred CC--cccccccchhHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCCChHHHHHHhcCcccce
Confidence 97 899999999985 56666 2 2221 1 2233 44454434444588999999554333 4444555 69
Q ss_pred EEeeCCHHHHHHHHHHHHH
Q 005021 546 MLRPADGNETAGAYKVAVA 564 (719)
Q Consensus 546 V~~P~d~~e~~~~l~~a~~ 564 (719)
||.|.|++.+-.++..|++
T Consensus 160 vylPpDANtlLav~~~clr 178 (179)
T PF03894_consen 160 VYLPPDANTLLAVMDHCLR 178 (179)
T ss_dssp EEE-SSHHHHHHHHHHHHH
T ss_pred eecCCcHhHHHHHHHHHhc
Confidence 9999999999999999985
|
PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A. |
| >cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.8e-07 Score=90.28 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=65.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|.+|.+++.|+|.++|.. +++|+|++|||+++ +....|..|..++|+-+++|+||++|.+...
T Consensus 49 ~g~mG~~lp~aiGa~la~~--------------~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~ 112 (186)
T cd02015 49 LGTMGFGLPAAIGAKVARP--------------DKTVICIDGDGSFQ--MNIQELATAAQYNLPVKIVILNNGSLGMVRQ 112 (186)
T ss_pred ccchhchHHHHHHHHHhCC--------------CCeEEEEEcccHHh--ccHHHHHHHHHhCCCeEEEEEECCccHHHHH
Confidence 4789999999999998742 56899999999998 4556699999999986777788887765321
Q ss_pred hh----------h--hcchhHHHHHhccCceEEEE
Q 005021 278 TE----------I--AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~----------~--~~~~~~~~~~~a~G~~~~~v 300 (719)
.. . ....+..+..++||++..+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 147 (186)
T cd02015 113 WQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRV 147 (186)
T ss_pred HHHHHcCCceeeccCCCCCCHHHHHHHCCCceEEe
Confidence 10 0 11346788889999887765
|
AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. |
| >cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.1e-07 Score=90.50 Aligned_cols=88 Identities=23% Similarity=0.286 Sum_probs=66.9
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
.-|++|.|++.|+|.++|.. +.+|||++|||+++-+. ..|..|.+++|+-+++|+|||+|.+-.
T Consensus 46 ~~gsmG~~lpaAiGa~la~p--------------~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 109 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLAKP--------------DREVYVLVGDGSYLMLH--SEIVTAVQEGLKIIIVLFDNHGFGCIN 109 (205)
T ss_pred CcchhhhHHHHHHHHHHhCC--------------CCeEEEEEccchhhccH--HHHHHHHHcCCCCEEEEEECCccHHHH
Confidence 45789999999999998742 57899999999999754 356678999999889999999997633
Q ss_pred chhh------------------------hcchhHHHHHhccCceEEEE
Q 005021 277 DTEI------------------------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~~------------------------~~~~~~~~~~~a~G~~~~~v 300 (719)
.... ....+..+..++||++..+|
T Consensus 110 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v 157 (205)
T cd02003 110 NLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKV 157 (205)
T ss_pred HHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEE
Confidence 1100 01246788888899887765
|
viciae IolD. IolD plays an important role in myo-inositol catabolism. |
| >cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.1e-06 Score=87.17 Aligned_cols=86 Identities=22% Similarity=0.259 Sum_probs=62.4
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcE-EEEEeCCCCCccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKL-IAFYDDNHISIDG 276 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nl-i~ivddN~~sis~ 276 (719)
.|++|.+++.|+|+|+|.+ .+|+|++|||+++-. ...+..+..+++.|+ ++|+|||+|++.+
T Consensus 41 ~g~mG~~lp~AiGaala~~---------------~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~ 103 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP---------------RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTG 103 (179)
T ss_pred ccchhhHHHHHHHHHhcCC---------------CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccC
Confidence 6899999999999999842 469999999999532 234445566665444 5557999998765
Q ss_pred chhh-h-cchhHHHHHhccCceEEEE
Q 005021 277 DTEI-A-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~~-~-~~~~~~~~~~a~G~~~~~v 300 (719)
.... . ...+..+..++||++...|
T Consensus 104 ~~~~~~~~~~d~~~lA~a~G~~~~~v 129 (179)
T cd03372 104 NQPTHAGKKTDLEAVAKACGLDNVAT 129 (179)
T ss_pred CCCCCCCCCCCHHHHHHHcCCCeEEe
Confidence 3321 1 1347888999999988765
|
M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors. |
| >cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-06 Score=86.70 Aligned_cols=88 Identities=18% Similarity=0.218 Sum_probs=64.7
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
.-|.+|.+++.|+|.++|.. +.+|+|++|||+++-+ ..| +..+..++++-+++|+||++|.+..
T Consensus 49 ~~g~mG~~~~~aiGa~~a~~--------------~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~ 112 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAYP--------------DRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIK 112 (178)
T ss_pred CCchhhhHHHHHHHHHHhCC--------------CCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHH
Confidence 34789999999999988742 5689999999999988 666 5668889997566666666787632
Q ss_pred ch---------hh-hcchhHHHHHhccCceEEEE
Q 005021 277 DT---------EI-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~---------~~-~~~~~~~~~~~a~G~~~~~v 300 (719)
.. .. ....++.+..++||++...+
T Consensus 113 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v 146 (178)
T cd02014 113 WEQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRV 146 (178)
T ss_pred HHHHHhcCCceeccCCCCCHHHHHHHCCCeEEEe
Confidence 11 10 11347888999999987654
|
POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. |
| >cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-06 Score=86.53 Aligned_cols=88 Identities=25% Similarity=0.269 Sum_probs=66.3
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.+++.|+|.++|.. +..|+|++|||+++- ..+| +..|.+++++.+++|+|||+|.+..
T Consensus 48 ~~g~mG~~l~~aiGaala~~--------------~~~vv~i~GDG~f~~-~~~e-l~ta~~~~~p~~ivV~nN~~~~~~~ 111 (183)
T cd02005 48 LWGSIGYSVPAALGAALAAP--------------DRRVILLVGDGSFQM-TVQE-LSTMIRYGLNPIIFLINNDGYTIER 111 (183)
T ss_pred chhhHhhhHHHHHHHHHhCC--------------CCeEEEEECCchhhc-cHHH-HHHHHHhCCCCEEEEEECCCcEEEE
Confidence 45889999999999998742 568999999999955 5677 4468888899999999999998743
Q ss_pred chh-------hhcchhHHHHHhccC----ceEEEE
Q 005021 277 DTE-------IAFTENVDKRFEGLG----WHVIWV 300 (719)
Q Consensus 277 ~~~-------~~~~~~~~~~~~a~G----~~~~~v 300 (719)
... .....+..+..++|| +...+|
T Consensus 112 ~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v 146 (183)
T cd02005 112 AIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRV 146 (183)
T ss_pred EeccCCcCcccCCCCCHHHHHHHhCCCccccEEEe
Confidence 211 011346788888888 455554
|
PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors. |
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.4e-06 Score=90.97 Aligned_cols=97 Identities=25% Similarity=0.323 Sum_probs=66.7
Q ss_pred CCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCC
Q 005021 182 TPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLG 261 (719)
Q Consensus 182 ~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~ 261 (719)
.+|||.. .++.|++|.+++.|+|+|+|.. +++|||+.|||++.-- ...|..++.+++.
T Consensus 210 ~~~~~~~------f~~~GsMG~a~p~AlG~ala~p--------------~r~Vv~i~GDGsflm~--~~eL~t~~~~~~~ 267 (361)
T TIGR03297 210 GQGHARD------FLTVGSMGHASQIALGLALARP--------------DQRVVCLDGDGAALMH--MGGLATIGTQGPA 267 (361)
T ss_pred ccCCCCc------eEeechhhhHHHHHHHHHHHCC--------------CCCEEEEEChHHHHHH--HHHHHHHHHhCCC
Confidence 4467643 2346999999999999999842 5789999999998422 2457778888876
Q ss_pred cEEEEEeCCCC-Ccccchh-hhcchhHHHHHhccCce-EEEE
Q 005021 262 KLIAFYDDNHI-SIDGDTE-IAFTENVDKRFEGLGWH-VIWV 300 (719)
Q Consensus 262 nli~ivddN~~-sis~~~~-~~~~~~~~~~~~a~G~~-~~~v 300 (719)
|+++||-||+. +..+... .....++.+..++|||. .+.|
T Consensus 268 nli~VVlNNg~~~~~g~q~~~~~~~d~~~iA~a~G~~~~~~v 309 (361)
T TIGR03297 268 NLIHVLFNNGAHDSVGGQPTVSQHLDFAQIAKACGYAKVYEV 309 (361)
T ss_pred CeEEEEEcCccccccCCcCCCCCCCCHHHHHHHCCCceEEEe
Confidence 78877766664 3322111 11245788889999973 4443
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.3e-06 Score=85.07 Aligned_cols=85 Identities=22% Similarity=0.273 Sum_probs=62.1
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEE-eCCCCCccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFY-DDNHISIDG 276 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~iv-ddN~~sis~ 276 (719)
.|++|.|++.|+|+++|. +.+|||++|||+++-+. ..+..|..+++.|+++|| ||++|++-+
T Consensus 41 ~gsmG~~lpaAiGa~la~---------------~~~Vv~i~GDG~f~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~~~ 103 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT---------------DRTVIVIDGDGSLLMNL--GVLPTIAAESPKNLILVILDNGAYGSTG 103 (181)
T ss_pred ccccccHHHHHHHHHHcC---------------CCcEEEEEcchHHHhhh--hHHHHHHHhCCCCeEEEEEeCCcccccc
Confidence 689999999999999985 24699999999998554 667778888853465555 666677644
Q ss_pred chhh-h-cchhHHHHHhccCceEEE
Q 005021 277 DTEI-A-FTENVDKRFEGLGWHVIW 299 (719)
Q Consensus 277 ~~~~-~-~~~~~~~~~~a~G~~~~~ 299 (719)
.... . ...+..+..++|||+...
T Consensus 104 ~q~~~~~~~~d~~~lA~a~G~~~~~ 128 (181)
T TIGR03846 104 NQPTPASRRTDLELVAKAAGIRNVE 128 (181)
T ss_pred CcCCCCCCCCCHHHHHHHCCCCeEE
Confidence 2111 1 134688899999998765
|
Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.5e-05 Score=95.16 Aligned_cols=204 Identities=15% Similarity=0.119 Sum_probs=137.1
Q ss_pred cccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCC
Q 005021 464 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN 543 (719)
Q Consensus 464 IaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPn 543 (719)
=.|..+++++.|-+..| .+..+.|=+.=+.+|.+.|...+-..+|+++... .+.+.+..+..|....|+...|.. |
T Consensus 58 EsE~~A~~av~GA~~aG--ara~T~TSs~GL~LM~e~l~~~ag~~~P~Vi~va-~R~~~~~~~~i~~dh~Dv~~~R~~-G 133 (1165)
T TIGR02176 58 QSEAGAAGAVHGALQTG--ALTTTFTASQGLLLMIPNMYKIAGELLPCVFHVS-ARAIAAHALSIFGDHQDVMAARQT-G 133 (1165)
T ss_pred cchHHHHHHHHhHhhcC--CCEEEecChhHHHHHHHHHHHHHhccCCEEEEEe-cCCCCCCCCccCCCchHHHHhhcC-C
Confidence 37999999999999999 4777777666677888888666656899888762 444333234456566677666664 6
Q ss_pred eEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC-------CCCCC---------CCCCCc-----------cccc--
Q 005021 544 ILMLRPADGNETAGAYKVAVA---NRKRPSILALSR-------QKLPH---------LAGTSI-----------DGVE-- 591 (719)
Q Consensus 544 l~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r-------~~~~~---------~~~~~~-----------~~~~-- 591 (719)
..|++|++.+|+..+-..|.+ +...|+++.+.- ..+.. ++.... .+..
T Consensus 134 ~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~l~~~~p~~~G 213 (1165)
T TIGR02176 134 FAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFRKRSMNPEHPHVRG 213 (1165)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhcccccccccCCCCCceeC
Confidence 799999999999887665542 246798887531 01100 000000 0000
Q ss_pred ------------------------------------cc-cEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcE
Q 005021 592 ------------------------------------KG-AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAV 634 (719)
Q Consensus 592 ------------------------------------~G-~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v 634 (719)
.| .|...+..+....+.+||++|+....+.+|.+.|+++|++|
T Consensus 214 ~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~eav~~Lr~~G~kV 293 (1165)
T TIGR02176 214 TAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEETVDYLNAKGEKV 293 (1165)
T ss_pred CCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCce
Confidence 11 11111111112478999999999999999999999999999
Q ss_pred EEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccC
Q 005021 635 RVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFG 674 (719)
Q Consensus 635 ~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G 674 (719)
.+|.++.+.||+.+.+. .+++.+.+.|+|+|-....|
T Consensus 294 Gli~vr~~rPFp~e~l~---~aLp~svK~I~Vler~~~~g 330 (1165)
T TIGR02176 294 GLLKVRLYRPFSAETFF---AALPKSVKRIAVLDRTKEPG 330 (1165)
T ss_pred eEEEEeEeCCCCHHHHH---HHHHhcCCEEEEEECCCCCC
Confidence 99999999999987653 34544445578999885444
|
This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase. |
| >cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.1e-06 Score=85.25 Aligned_cols=88 Identities=19% Similarity=0.162 Sum_probs=65.3
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.|++.|+|.++|.. +++|+|++|||+++-. . ..|..|.+++|+-+++|+||++|.+..
T Consensus 51 ~~g~mG~~lpaaiGa~la~p--------------~r~vv~i~GDG~f~m~-~-~eL~Ta~~~~lpvi~vV~NN~~yg~~~ 114 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAAP--------------DRPVVAIAGDGAWGMS-M-MEIMTAVRHKLPVTAVVFRNRQWGAEK 114 (196)
T ss_pred CCcccccHHHHHHHHHHhCC--------------CCcEEEEEcchHHhcc-H-HHHHHHHHhCCCeEEEEEECchhHHHH
Confidence 34789999999999998742 5689999999999874 3 445668899997666677999998643
Q ss_pred chhh-----------hcchhHHHHHhccCceEEEE
Q 005021 277 DTEI-----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~~-----------~~~~~~~~~~~a~G~~~~~v 300 (719)
.... ....++.+..++||++..+|
T Consensus 115 ~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 149 (196)
T cd02013 115 KNQVDFYNNRFVGTELESESFAKIAEACGAKGITV 149 (196)
T ss_pred HHHHHHcCCCcccccCCCCCHHHHHHHCCCEEEEE
Confidence 2110 11346788889999887765
|
Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. |
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.6e-06 Score=97.51 Aligned_cols=87 Identities=25% Similarity=0.292 Sum_probs=68.3
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|.+|.+++.|+|.++|.. +.+|+|++|||+++.+. +.+..|.+++|+-+++|+|||+|.+...
T Consensus 406 ~g~mG~~lp~aiGa~la~p--------------~~~vv~i~GDG~f~~~~--~eL~ta~~~~lp~~~vv~NN~~~~~~~~ 469 (530)
T PRK07092 406 SGGLGYGLPAAVGVALAQP--------------GRRVIGLIGDGSAMYSI--QALWSAAQLKLPVTFVILNNGRYGALRW 469 (530)
T ss_pred CCcccchHHHHHHHHHhCC--------------CCeEEEEEeCchHhhhH--HHHHHHHHhCCCcEEEEEeChHHHHHHH
Confidence 5899999999999999742 56899999999999874 8899999999986777777777876321
Q ss_pred h----------hh-hcchhHHHHHhccCceEEEE
Q 005021 278 T----------EI-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~----------~~-~~~~~~~~~~~a~G~~~~~v 300 (719)
. +. ....++.+..++||++...|
T Consensus 470 ~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v 503 (530)
T PRK07092 470 FAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRV 503 (530)
T ss_pred HHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEe
Confidence 1 11 12356888999999987766
|
|
| >KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0004 Score=77.00 Aligned_cols=249 Identities=15% Similarity=0.181 Sum_probs=143.0
Q ss_pred HHHHHHHHhhCCceEEEecCCCCCccccc------ccccc-Cc------cc-CCCCCccccccccchHHHHHHHHHhcCC
Q 005021 416 QTCLNALAKTLPGLLGGSADLASSNMTLL------KMFGD-FQ------KD-TPEERNVRFGVREHGMGAICNGIALHSP 481 (719)
Q Consensus 416 ~~~L~~l~~~dp~iv~~saDl~~s~~~~~------~g~~~-f~------~~-~~p~R~~d~GIaE~~~vg~AaGlA~~G~ 481 (719)
.-++..++-+.-++-+-+.|++.+++.-. ..+++ |. .+ +--=-+-|..++|.+..|+--||+....
T Consensus 571 AlA~GSll~qG~nVRiSGqDVGRGTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLGFEyGmsienP 650 (913)
T KOG0451|consen 571 ALAIGSLLYQGHNVRISGQDVGRGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEYGMSIENP 650 (913)
T ss_pred HHHHHHHHhccCceeeeccccCcccccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhhhhhhcccccCCc
Confidence 44566777788899999999987664321 00110 00 00 0001345678999999999999999875
Q ss_pred CCccEEE-ehhhhHHhH---HHHHHHHh----hhcCCEEEEEecCCCccCCCCCCCCChhhhhHHc-----------CCC
Q 005021 482 GLIPYCA-TFFVFTDYM---RAAIRISA----LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR-----------AMP 542 (719)
Q Consensus 482 ~~~Pv~~-~y~~F~~ra---~dqir~~a----~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr-----------~iP 542 (719)
...|++. .|.+|..-+ +|-....+ +....+++...| |+ -.-||-|.+--..-+|. .--
T Consensus 651 ~~L~iWEAQFGDFfNGAQIIiDTFi~sgE~KWl~ssglvmLLPH-Gy--DGAgpeHSSCRiERFLQlCDS~E~~vDGd~V 727 (913)
T KOG0451|consen 651 NNLIIWEAQFGDFFNGAQIIIDTFIVSGETKWLESSGLVMLLPH-GY--DGAGPEHSSCRIERFLQLCDSKETSVDGDSV 727 (913)
T ss_pred ccceeehhhhcccccCceEEEeeeecccchhhhhhCCeEEEccC-Cc--CCCCCccchhhHHHHHHHhccccccCCCcce
Confidence 4567764 677776432 22111111 223445555433 33 23467787655545553 224
Q ss_pred CeEEEeeCCHHHHHHHHHH-HHHcCCCcEEEEEcCCCC--CCCCCCCcccccccc-E--E----EecCCCCCCCCEEEEE
Q 005021 543 NILMLRPADGNETAGAYKV-AVANRKRPSILALSRQKL--PHLAGTSIDGVEKGA-Y--I----ISDNSSGNKPDVILIG 612 (719)
Q Consensus 543 nl~V~~P~d~~e~~~~l~~-a~~~~~~P~~irl~r~~~--~~~~~~~~~~~~~G~-~--~----i~~~~~~~g~dvtIva 612 (719)
||.|+-|.++.+...+|+. .+++...|.++.-||--+ |.... ..+.+..|. + . +.+. ..-+-+|+.
T Consensus 728 Nm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRlPaA~S-T~~ef~PGTtf~nVigd~~~~p---~kvkkvifc 803 (913)
T KOG0451|consen 728 NMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRLPAATS-THEEFQPGTTFHNVIGDTIAKP---EKVKKVIFC 803 (913)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhhCcchhh-hHhhcCCCccccccccccccCh---hHheEEEEe
Confidence 7999999999999999984 456678898887666322 11100 112233331 1 1 1121 123456777
Q ss_pred eCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhcc--CCCceEEEEccccccC
Q 005021 613 TGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLP--AAVSARVSIEAGSTFG 674 (719)
Q Consensus 613 ~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~--~~~~~vvvvE~~~~~G 674 (719)
.|--.....+..+.+..+. .+.+|-+-++-||..+.+.. .+.+ .-...|..-|+....|
T Consensus 804 SGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa--~l~kY~~vqdfvWSQEEprNmG 864 (913)
T KOG0451|consen 804 SGKHYYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQA--QLAKYGNVQDFVWSQEEPRNMG 864 (913)
T ss_pred cCcchhhHHHHHHhccccc-ceeeEehhhcCCCchHHHHH--HHHhcCChhhhcccccccccCC
Confidence 7887776666666654333 37888887777776654431 1111 1122356778887766
|
|
| >cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.3e-06 Score=80.06 Aligned_cols=86 Identities=21% Similarity=0.292 Sum_probs=61.1
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhc-CCCcEEEEEeCCCCCccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHL-GLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~-~L~nli~ivddN~~sis~ 276 (719)
-|++|.|++.|+|+++|. +.+|||++|||+++-.. ..+..+..+ +++=+++|+||++|.+.+
T Consensus 41 ~gsmG~~lp~AiGa~~a~---------------~~~Vv~i~GDG~f~m~~--~el~t~~~~~~~~i~~vV~nN~~~g~~~ 103 (157)
T cd02001 41 LGSMGLAGSIGLGLALGL---------------SRKVIVVDGDGSLLMNP--GVLLTAGEFTPLNLILVVLDNRAYGSTG 103 (157)
T ss_pred ecchhhHHHHHHHHHhcC---------------CCcEEEEECchHHHhcc--cHHHHHHHhcCCCEEEEEEeCccccccC
Confidence 788999999999999874 24699999999994221 224556666 475445666888888654
Q ss_pred chhh-hcchhHHHHHhccCceEEEE
Q 005021 277 DTEI-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~~-~~~~~~~~~~~a~G~~~~~v 300 (719)
.... ....++.+..++||++..+|
T Consensus 104 ~~~~~~~~~d~~~lA~a~G~~~~~v 128 (157)
T cd02001 104 GQPTPSSNVNLEAWAAACGYLVLSA 128 (157)
T ss_pred CcCCCCCCCCHHHHHHHCCCceEEc
Confidence 2221 12457899999999987765
|
Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors. |
| >PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.9e-06 Score=87.32 Aligned_cols=73 Identities=19% Similarity=0.082 Sum_probs=61.4
Q ss_pred CccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 005021 193 GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272 (719)
Q Consensus 193 gi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~ 272 (719)
.+.......|.+++.|.|+++|.+.++. .+..|++++|||.+.++-+ |+|++|..+++ |+++||.||++
T Consensus 63 ~~~~i~~~~G~~~~~A~G~a~A~~~~~~---------~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~-~v~~vv~dN~~ 131 (300)
T PRK11864 63 TVPVLHTAFAATAAVASGIEEALKARGE---------KGVIVVGWAGDGGTADIGF-QALSGAAERNH-DILYIMYDNEA 131 (300)
T ss_pred cccceeehhhChHHHHHHHHHHHHhhCC---------CCcEEEEEEccCccccccH-HHHHHHHHhCc-CEEEEEECCee
Confidence 4556678899999999999999988652 1345777999999988885 99999999997 59999999998
Q ss_pred Cccc
Q 005021 273 SIDG 276 (719)
Q Consensus 273 sis~ 276 (719)
.+.+
T Consensus 132 ~~~T 135 (300)
T PRK11864 132 YMNT 135 (300)
T ss_pred eecC
Confidence 8754
|
|
| >cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.9e-06 Score=80.93 Aligned_cols=88 Identities=18% Similarity=0.225 Sum_probs=64.9
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.|++.|+|.++|.. +.+|||++|||+++ +....|..|.+++++-+++|+||++|.+-.
T Consensus 46 ~~g~mG~~lp~aiGa~la~~--------------~~~vv~i~GDG~f~--m~~~eL~ta~~~~l~vi~vV~NN~~~g~~~ 109 (177)
T cd02010 46 GLATMGVALPGAIGAKLVYP--------------DRKVVAVSGDGGFM--MNSQELETAVRLKIPLVVLIWNDNGYGLIK 109 (177)
T ss_pred CChhhhhHHHHHHHHHHhCC--------------CCcEEEEEcchHHH--hHHHHHHHHHHHCCCeEEEEEECCcchHHH
Confidence 45789999999999999842 57899999999996 555667778999998777778999888642
Q ss_pred chh---------h-hcchhHHHHHhccCceEEEE
Q 005021 277 DTE---------I-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~---------~-~~~~~~~~~~~a~G~~~~~v 300 (719)
... . ....+..+..++||.+..+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 143 (177)
T cd02010 110 WKQEKEYGRDSGVDFGNPDFVKYAESFGAKGYRI 143 (177)
T ss_pred HHHHHhcCCcccCcCCCCCHHHHHHHCCCEEEEE
Confidence 111 0 01236677777888776654
|
ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. |
| >PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.3e-06 Score=79.47 Aligned_cols=89 Identities=22% Similarity=0.276 Sum_probs=68.2
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcc
Q 005021 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISID 275 (719)
Q Consensus 196 ~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis 275 (719)
...|.+|.+++.|+|+++|. .+.+|||++|||++.-. .-.+..|.+++++-++||+||+.|.+.
T Consensus 25 ~~~g~mG~~~~~aiGa~~a~--------------p~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~~~~ 88 (153)
T PF02775_consen 25 GGFGSMGYALPAAIGAALAR--------------PDRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGYGMT 88 (153)
T ss_dssp TTTT-TTTHHHHHHHHHHHS--------------TTSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBSHHH
T ss_pred CCccccCCHHHhhhHHHhhc--------------CcceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcceEe
Confidence 46789999999999999972 26789999999999776 556778888889877788888888764
Q ss_pred cchhh--------------hcchhHHHHHhccCceEEEE
Q 005021 276 GDTEI--------------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 276 ~~~~~--------------~~~~~~~~~~~a~G~~~~~v 300 (719)
..... ....++.+..+++|.+..+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 127 (153)
T PF02775_consen 89 GGQQTPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARV 127 (153)
T ss_dssp HHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEE
T ss_pred ccccccCcCcccccccccccccCCHHHHHHHcCCcEEEE
Confidence 43310 11347888999999987765
|
It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A .... |
| >PRK06163 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.3e-05 Score=80.97 Aligned_cols=87 Identities=24% Similarity=0.307 Sum_probs=60.4
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhc-CCCcEEEEEeCCCCCccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHL-GLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~-~L~nli~ivddN~~sis~ 276 (719)
.|.+|.|++.|+|+++|.. +++|||++|||+++=. ...|..|..+ +++-++||+||++|.+..
T Consensus 56 ~GsMG~glpaAiGaalA~p--------------~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~ 119 (202)
T PRK06163 56 LGSMGLAFPIALGVALAQP--------------KRRVIALEGDGSLLMQ--LGALGTIAALAPKNLTIIVMDNGVYQITG 119 (202)
T ss_pred ecccccHHHHHHHHHHhCC--------------CCeEEEEEcchHHHHH--HHHHHHHHHhcCCCeEEEEEcCCchhhcC
Confidence 6889999999999999842 5789999999997533 2345555555 566566777777888643
Q ss_pred chhh--hcchhHHHHHhccCce-EEEE
Q 005021 277 DTEI--AFTENVDKRFEGLGWH-VIWV 300 (719)
Q Consensus 277 ~~~~--~~~~~~~~~~~a~G~~-~~~v 300 (719)
.... ....++.+..++||++ ..+|
T Consensus 120 ~~~~~~~~~~Df~~lA~a~G~~~~~~v 146 (202)
T PRK06163 120 GQPTLTSQTVDVVAIARGAGLENSHWA 146 (202)
T ss_pred CccCCCCCCCCHHHHHHHCCCceEEEe
Confidence 2211 1234688888999986 4444
|
|
| >cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.1e-05 Score=81.73 Aligned_cols=62 Identities=21% Similarity=0.293 Sum_probs=50.6
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~si 274 (719)
..|++|.+++.|+|.++|.. +++|||++|||+++=.. -.|..|.+++|+-+++|+||++|.+
T Consensus 55 ~~GsmG~~lpaaiGa~la~p--------------~~~vv~i~GDG~f~m~~--~eL~Ta~~~~lpviivV~NN~~yg~ 116 (202)
T cd02006 55 QAGPLGWTVPAALGVAAADP--------------DRQVVALSGDYDFQFMI--EELAVGAQHRIPYIHVLVNNAYLGL 116 (202)
T ss_pred CccchhhhhHHHHhHHhhCC--------------CCeEEEEEeChHhhccH--HHHHHHHHhCCCeEEEEEeCchHHH
Confidence 45889999999999998842 57899999999996543 4566799999987788888888875
|
E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors. |
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.7e-05 Score=92.09 Aligned_cols=87 Identities=24% Similarity=0.306 Sum_probs=67.1
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.+++.|+|++++. .+..|+|++|||+++-+ .+.+..|.+++|+-+++|+|||+|.+-..
T Consensus 401 ~GsmG~~lp~aiGa~la~--------------p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~ 464 (542)
T PRK08266 401 QGTLGYGFPTALGAKVAN--------------PDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRR 464 (542)
T ss_pred CcccccHHHHHHHHHHhC--------------CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 388999999999998873 25689999999999987 47888999999987777888888875321
Q ss_pred hh----------h-hcchhHHHHHhccCceEEEE
Q 005021 278 TE----------I-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~----------~-~~~~~~~~~~~a~G~~~~~v 300 (719)
.. . ....++.+..++||.+..+|
T Consensus 465 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v 498 (542)
T PRK08266 465 DQKRRFGGRVVASDLVNPDFVKLAESFGVAAFRV 498 (542)
T ss_pred HHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEe
Confidence 10 0 11246788888999887765
|
|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.9e-05 Score=89.94 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=62.2
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|++|.+++.|+|.++|. .+.+|+|++|||+++ +.+..|+.|.+++|+-++||+||+.|.+-..
T Consensus 436 ~gsmG~~l~~aiGa~la~--------------~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~ 499 (578)
T PRK06112 436 LAGLGWGVPMAIGAKVAR--------------PGAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGILGFQKH 499 (578)
T ss_pred ccccccHHHHHHHHHhhC--------------CCCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCccCCEEe
Confidence 378899999999998873 256899999999995 7788999999999964555555553332110
Q ss_pred ---------hhh--hcchhHHHHHhccCceEEEE
Q 005021 278 ---------TEI--AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ---------~~~--~~~~~~~~~~~a~G~~~~~v 300 (719)
... ....+..+..++||++..+|
T Consensus 500 ~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v 533 (578)
T PRK06112 500 AETVKFGTHTDACHFAAVDHAAIARACGCDGVRV 533 (578)
T ss_pred ccccccCCccccCcCCCCCHHHHHHHCCCeEEEe
Confidence 000 11346788889999887765
|
|
| >cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) | Back alignment and domain information |
|---|
Probab=97.78 E-value=4e-05 Score=75.71 Aligned_cols=85 Identities=20% Similarity=0.151 Sum_probs=62.1
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccch
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~ 278 (719)
|.+|.+++.|+|.++|. +++|||++|||+++-. ...|..|.+++++-+++|+||++|++-...
T Consensus 51 g~mG~~l~~aiGa~la~---------------~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~ 113 (175)
T cd02009 51 SGIDGTLSTALGIALAT---------------DKPTVLLTGDLSFLHD--LNGLLLGKQEPLNLTIVVINNNGGGIFSLL 113 (175)
T ss_pred cchhhHHHHHHHHHhcC---------------CCCEEEEEehHHHHHh--HHHHHhccccCCCeEEEEEECCCCchheec
Confidence 66889999999999884 2459999999999755 456667888899877888888877752211
Q ss_pred ---------hhh----cchhHHHHHhccCceEEEE
Q 005021 279 ---------EIA----FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 279 ---------~~~----~~~~~~~~~~a~G~~~~~v 300 (719)
... ...+..+..++||++..+|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 148 (175)
T cd02009 114 PQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRV 148 (175)
T ss_pred cCCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeC
Confidence 111 1346788888899887665
|
SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity. |
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.4e-05 Score=89.98 Aligned_cols=87 Identities=18% Similarity=0.249 Sum_probs=62.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|.+|.|++.|+|++++.. +.+|+|++|||+++ +....+..|..++|+=+++|+||+.|.+-..
T Consensus 414 ~g~mG~glpaaiGa~la~p--------------~~~vv~i~GDGsf~--~~~~el~ta~~~~l~i~~vv~nN~~~~~~~~ 477 (557)
T PRK08199 414 SGSMGYGLPAAIAAKLLFP--------------ERTVVAFAGDGCFL--MNGQELATAVQYGLPIIVIVVNNGMYGTIRM 477 (557)
T ss_pred CccccchHHHHHHHHHhCC--------------CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 5899999999999988742 57899999999988 5557788899999964444555555664221
Q ss_pred -hhh----------hcchhHHHHHhccCceEEEE
Q 005021 278 -TEI----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 -~~~----------~~~~~~~~~~~a~G~~~~~v 300 (719)
... ....+..+..++||++..+|
T Consensus 478 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 511 (557)
T PRK08199 478 HQEREYPGRVSGTDLTNPDFAALARAYGGHGETV 511 (557)
T ss_pred HHHHhcCCccccccCCCCCHHHHHHHCCCeEEEe
Confidence 100 01246888899999987765
|
|
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.4e-05 Score=90.24 Aligned_cols=89 Identities=24% Similarity=0.278 Sum_probs=65.0
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|++|.|++.|+|.++|. .+.+|+|++|||+++-+..-+.++.|.+++|+-++||+||++|.+-..
T Consensus 429 ~gsmG~~lp~aiGa~la~--------------p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~ 494 (569)
T PRK08327 429 AGGLGWALGAALGAKLAT--------------PDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKE 494 (569)
T ss_pred CCCCCcchHHHHHHhhcC--------------CCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchh
Confidence 479999999999988863 267899999999999886556799999999976666666667775321
Q ss_pred ----------------h-hh-h-cchhHHHHHhccCceEEEE
Q 005021 278 ----------------T-EI-A-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ----------------~-~~-~-~~~~~~~~~~a~G~~~~~v 300 (719)
. .. . ...+..+..++||+...+|
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v 536 (569)
T PRK08327 495 AVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERV 536 (569)
T ss_pred HHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEe
Confidence 0 00 1 1246777888888866554
|
|
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=7.2e-05 Score=87.64 Aligned_cols=87 Identities=15% Similarity=0.173 Sum_probs=64.7
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|+++|.. +.+|+|++|||+++-. .-.+..|..++|+-++||+||++|.+-..
T Consensus 407 ~gsmG~~~paAiGa~la~p--------------~~~vv~i~GDGsf~~~--~~el~Ta~~~~lpv~~vV~NN~~~g~i~~ 470 (578)
T PRK06546 407 HGSMANALPHAIGAQLADP--------------GRQVISMSGDGGLSML--LGELLTVKLYDLPVKVVVFNNSTLGMVKL 470 (578)
T ss_pred cccccchhHHHHHHHHhCC--------------CCcEEEEEcCchHhhh--HHHHHHHHHhCCCeEEEEEECCccccHHH
Confidence 5889999999999999842 5689999999999853 34578899999987777777777775311
Q ss_pred --------h-hh-hcchhHHHHHhccCceEEEE
Q 005021 278 --------T-EI-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 --------~-~~-~~~~~~~~~~~a~G~~~~~v 300 (719)
. +. ....+..+..++||.+...|
T Consensus 471 ~q~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v 503 (578)
T PRK06546 471 EMLVDGLPDFGTDHPPVDYAAIAAALGIHAVRV 503 (578)
T ss_pred HHHhcCCCcccccCCCCCHHHHHHHCCCeeEEe
Confidence 0 01 12346788888888876665
|
|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.67 E-value=6e-05 Score=88.21 Aligned_cols=86 Identities=21% Similarity=0.280 Sum_probs=65.1
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccch
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~ 278 (719)
|++|.|++.|+|.++|. .+.+|+|++|||+++-. .. .|..|.+++|+-++||+||++|.+-...
T Consensus 424 g~mG~glpaAiGaala~--------------p~~~vv~i~GDGsf~m~-~~-eL~ta~r~~lpi~ivV~NN~~~~~i~~~ 487 (571)
T PRK07710 424 GTMGFGLPAAIGAQLAK--------------PDETVVAIVGDGGFQMT-LQ-ELSVIKELSLPVKVVILNNEALGMVRQW 487 (571)
T ss_pred ccccchHHHHHHHHHhC--------------CCCcEEEEEcchHHhhh-HH-HHHHHHHhCCCeEEEEEECchHHHHHHH
Confidence 78899999999999984 25689999999999843 34 4999999999878888888888763211
Q ss_pred ---------hh--h-cchhHHHHHhccCceEEEE
Q 005021 279 ---------EI--A-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 279 ---------~~--~-~~~~~~~~~~a~G~~~~~v 300 (719)
.. . ...+..+..++||.+..+|
T Consensus 488 ~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v 521 (571)
T PRK07710 488 QEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRI 521 (571)
T ss_pred HHHHhCCcceeccCCCCCCHHHHHHHCCCeEEEE
Confidence 00 0 1246778888888877765
|
|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=7.1e-05 Score=87.55 Aligned_cols=87 Identities=15% Similarity=0.186 Sum_probs=63.3
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|. .+.+|+|++|||+++ +....+..|.+++|+-++||+||++|.+...
T Consensus 421 ~gsmG~~lp~aiGa~lA~--------------p~~~vv~i~GDG~f~--~~~~el~Ta~~~~lpi~~vV~NN~~~~~~~~ 484 (570)
T PRK06725 421 LGTMGFGFPAAIGAQLAK--------------EEELVICIAGDASFQ--MNIQELQTIAENNIPVKVFIINNKFLGMVRQ 484 (570)
T ss_pred cccccchhhHHHhhHhhc--------------CCCeEEEEEecchhh--ccHHHHHHHHHhCCCeEEEEEECCccHHHHH
Confidence 388999999999999874 257899999999996 3344577889999986666777776765321
Q ss_pred hh-----------hhcchhHHHHHhccCceEEEE
Q 005021 278 TE-----------IAFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~-----------~~~~~~~~~~~~a~G~~~~~v 300 (719)
.. .....+..+..++||.+..+|
T Consensus 485 ~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 518 (570)
T PRK06725 485 WQEMFYENRLSESKIGSPDFVKVAEAYGVKGLRA 518 (570)
T ss_pred HHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEe
Confidence 10 011346788888888877665
|
|
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=7.2e-05 Score=86.39 Aligned_cols=87 Identities=23% Similarity=0.256 Sum_probs=65.7
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|++|.|++.|+|.++|.. +.+|+|++|||+++- ....|..|.+++|+-++||+||++|.+-..
T Consensus 384 ~g~mG~~lpaaiGa~lA~p--------------~r~Vv~i~GDGsf~m--~~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~ 447 (514)
T PRK07586 384 GGAIGQGLPLATGAAVACP--------------DRKVLALQGDGSAMY--TIQALWTQARENLDVTTVIFANRAYAILRG 447 (514)
T ss_pred CcccccHHHHHHHHHHhCC--------------CCeEEEEEechHHHh--HHHHHHHHHHcCCCCEEEEEeCchhHHHHH
Confidence 3889999999999999842 678999999999874 456778889999987888889999975321
Q ss_pred h-----------------hhh-cchhHHHHHhccCceEEEE
Q 005021 278 T-----------------EIA-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~-----------------~~~-~~~~~~~~~~a~G~~~~~v 300 (719)
. +.. ...+..+..++||++..+|
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V 488 (514)
T PRK07586 448 ELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVPARRV 488 (514)
T ss_pred HHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCCcEEEe
Confidence 0 000 1236777888888877665
|
|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=6.3e-05 Score=88.07 Aligned_cols=88 Identities=18% Similarity=0.269 Sum_probs=63.9
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.|++.|+|+++|.. +.+|+|++|||+++-. ...|..|.+++|+-++||+||++|.+-.
T Consensus 419 ~~g~mG~~lp~aiGa~la~p--------------~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~~~~~i~ 482 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAHP--------------EATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNRFLGMVK 482 (574)
T ss_pred CcccccchhHHHHHHHhhcC--------------CCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECchhHHHH
Confidence 35789999999999999842 5679999999999664 5888899999997566666666665311
Q ss_pred ---------ch-hhh--cchhHHHHHhccCceEEEE
Q 005021 277 ---------DT-EIA--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ---------~~-~~~--~~~~~~~~~~a~G~~~~~v 300 (719)
+. ... ...+..+..++||.+..+|
T Consensus 483 ~~q~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v 518 (574)
T PRK06882 483 QWQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGIQI 518 (574)
T ss_pred HHHHHhcCCcccccCCCCCCCHHHHHHHCCCeEEEe
Confidence 10 011 1246788888899877765
|
|
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=97.63 E-value=9e-05 Score=86.58 Aligned_cols=87 Identities=21% Similarity=0.227 Sum_probs=63.8
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|.+|.|++.|+|.++|.. +.+|+|++|||+++-. ..| |..|..++|+-+++|+||++|.+-..
T Consensus 413 ~g~mG~~l~~aiGa~la~p--------------~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~~~~i~~ 476 (563)
T PRK08527 413 LGTMGYGLPAALGAKLAVP--------------DKVVINFTGDGSILMN-IQE-LMTAVEYKIPVINIILNNNFLGMVRQ 476 (563)
T ss_pred cccccchHHHHHHHHHhCC--------------CCcEEEEecCchhccc-HHH-HHHHHHhCCCeEEEEEECCcchhHHH
Confidence 3789999999999999842 5679999999999963 344 78899999987778888888775321
Q ss_pred hh---------hh---cchhHHHHHhccCceEEEE
Q 005021 278 TE---------IA---FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~---------~~---~~~~~~~~~~a~G~~~~~v 300 (719)
.. .. ...+..+..++||.+..+|
T Consensus 477 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 511 (563)
T PRK08527 477 WQTFFYEERYSETDLSTQPDFVKLAESFGGIGFRV 511 (563)
T ss_pred HHHhhcCCceeeccCCCCCCHHHHHHHCCCeEEEE
Confidence 10 00 1236777888888776655
|
|
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=9.3e-05 Score=85.59 Aligned_cols=87 Identities=24% Similarity=0.261 Sum_probs=65.8
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|++|.|++.|+|.++|.. +++|+|++|||+++ +..-.|..|.+++|+-++||+||++|.+-..
T Consensus 388 ~gsmG~glpaAiGa~lA~p--------------~r~vv~i~GDG~f~--m~~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~ 451 (518)
T PRK12474 388 GGSIGQGLPLAAGAAVAAP--------------DRKVVCPQGDGGAA--YTMQALWTMARENLDVTVVIFANRSYAILNG 451 (518)
T ss_pred CCccCccHHHHHHHHHHCC--------------CCcEEEEEcCchhc--chHHHHHHHHHHCCCcEEEEEcCCcchHHHH
Confidence 4999999999999999842 67899999999997 4457788899999998888889988875321
Q ss_pred h---------h------h-hc--chhHHHHHhccCceEEEE
Q 005021 278 T---------E------I-AF--TENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~---------~------~-~~--~~~~~~~~~a~G~~~~~v 300 (719)
. + . .. ..+..+..++||.+..+|
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv 492 (518)
T PRK12474 452 ELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGVEASRA 492 (518)
T ss_pred HHHhhcCCCCCccccccccCCCCCCCHHHHHHHCCCeEEEe
Confidence 0 0 0 01 135777788888876665
|
|
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=7.7e-05 Score=86.61 Aligned_cols=87 Identities=18% Similarity=0.262 Sum_probs=63.8
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|.+|.|++.|+|.++|. .+.+|+|++|||+++ +....+..|..++|+=++||+||++|.+-..
T Consensus 406 ~g~mG~~lp~aiGa~lA~--------------p~~~vv~i~GDG~f~--~~~~el~ta~~~~lpi~~vV~NN~~~g~i~~ 469 (535)
T PRK07524 406 YGTLGYGLPAAIGAALGA--------------PERPVVCLVGDGGLQ--FTLPELASAVEADLPLIVLLWNNDGYGEIRR 469 (535)
T ss_pred cccccchHHHHHHHHHhC--------------CCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECCchHHHHH
Confidence 489999999999999984 267899999999997 3334488999999986667777778874211
Q ss_pred ---------hhh-hcchhHHHHHhccCceEEEE
Q 005021 278 ---------TEI-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ---------~~~-~~~~~~~~~~~a~G~~~~~v 300 (719)
.+. ....+..+..++||.+...|
T Consensus 470 ~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v 502 (535)
T PRK07524 470 YMVARDIEPVGVDPYTPDFIALARAFGCAAERV 502 (535)
T ss_pred HHHHhcCCccccCCCCCCHHHHHHHCCCcEEEe
Confidence 011 11246778888888876665
|
|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00011 Score=85.98 Aligned_cols=87 Identities=22% Similarity=0.283 Sum_probs=63.9
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|.+|.|++.|+|.++|.. +.+|+|++|||+++-. ..| +..|..++|+-++||+||++|.+-..
T Consensus 418 ~g~mG~~lpaaiGa~la~~--------------~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~~ 481 (564)
T PRK08155 418 LGTMGFGLPAAIGAALANP--------------ERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQ 481 (564)
T ss_pred cccccchhHHHHHHHHhCC--------------CCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccHH
Confidence 3789999999999999852 5679999999999964 455 77889999976667777777876432
Q ss_pred hh----------h-h-cchhHHHHHhccCceEEEE
Q 005021 278 TE----------I-A-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~----------~-~-~~~~~~~~~~a~G~~~~~v 300 (719)
.. . . ...+..+..++||.+...|
T Consensus 482 ~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 516 (564)
T PRK08155 482 QQSLFYGQRVFAATYPGKINFMQIAAGFGLETCDL 516 (564)
T ss_pred HHHHhcCCCeeeccCCCCCCHHHHHHHCCCeEEEe
Confidence 10 1 1 1246777888888776654
|
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00014 Score=85.31 Aligned_cols=88 Identities=17% Similarity=0.151 Sum_probs=65.0
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
.-|++|.|++.|+|.++|.. +++|+|++|||+++--. -.|..|.+++|+-++||+||++|.+-.
T Consensus 406 ~~G~mG~~lpaAiGa~la~p--------------~r~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~i~ 469 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAHP--------------GRQVVALSGDGGFSMLM--GDFLSLVQLKLPVKIVVFNNSVLGFVA 469 (574)
T ss_pred CcccccchHHHHHHHHHhCC--------------CCeEEEEecCcHHhccH--HHHHHHHHhCCCeEEEEEeCCccccHH
Confidence 34788999999999998742 57899999999996542 346678999998788888888887631
Q ss_pred ch---------hh-hcchhHHHHHhccCceEEEE
Q 005021 277 DT---------EI-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~---------~~-~~~~~~~~~~~a~G~~~~~v 300 (719)
.. +. ....+..+..++||.+..+|
T Consensus 470 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 503 (574)
T PRK09124 470 MEMKAGGYLTDGTDLHNPDFAAIAEACGITGIRV 503 (574)
T ss_pred HHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEe
Confidence 10 00 11246788888999887766
|
|
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00015 Score=84.74 Aligned_cols=87 Identities=18% Similarity=0.098 Sum_probs=66.2
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|++|.|++.|+|.++|.. ++.|+|++|||+++-. ...|..|.+++|+-++||+||++|.+-..
T Consensus 430 ~gsmG~glpaaiGa~la~p--------------~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~ 493 (565)
T PRK06154 430 TTQLGYGLGLAMGAKLARP--------------DALVINLWGDAAFGMT--GMDFETAVRERIPILTILLNNFSMGGYDK 493 (565)
T ss_pred CcccccHHHHHHHHHHhCC--------------CCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECCccceeeh
Confidence 5789999999999999842 5789999999999644 45688999999988888889988885321
Q ss_pred hh---------hhcchhHHHHHhccCceEEEE
Q 005021 278 TE---------IAFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~---------~~~~~~~~~~~~a~G~~~~~v 300 (719)
.. .....+..+..++||.+..+|
T Consensus 494 ~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V 525 (565)
T PRK06154 494 VMPVSTTKYRATDISGDYAAIARALGGYGERV 525 (565)
T ss_pred hhhhhcCcccccCCCCCHHHHHHHCCCeEEEE
Confidence 10 011246778888888877665
|
|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00014 Score=84.76 Aligned_cols=88 Identities=22% Similarity=0.267 Sum_probs=65.9
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.|++.|+|.++|.. +.+|+|++|||+++ +....|..|..++++-+++|+||++|.+-.
T Consensus 404 ~~g~mG~~lpaaiGa~la~p--------------~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~iiV~NN~~~g~~~ 467 (547)
T PRK08322 404 ALATMGAGLPSAIAAKLVHP--------------DRKVLAVCGDGGFM--MNSQELETAVRLGLPLVVLILNDNAYGMIR 467 (547)
T ss_pred CcccccchhHHHHHHHHhCC--------------CCcEEEEEcchhHh--ccHHHHHHHHHhCCCeEEEEEeCCCcchHH
Confidence 35789999999999998842 56899999999998 444557778899998888889999988632
Q ss_pred ch---------hhh-cchhHHHHHhccCceEEEE
Q 005021 277 DT---------EIA-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~---------~~~-~~~~~~~~~~a~G~~~~~v 300 (719)
.. ... ...+..+..++||.+..+|
T Consensus 468 ~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v 501 (547)
T PRK08322 468 WKQENMGFEDFGLDFGNPDFVKYAESYGAKGYRV 501 (547)
T ss_pred HHHHhhcCCcccccCCCCCHHHHHHHCCCeEEEe
Confidence 11 001 1246778888888877665
|
|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00012 Score=86.03 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=51.4
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~si 274 (719)
-|++|.|++.|+|.++|.. +++|||++|||+++-. ...|..|.+++|+-++||+||++|.+
T Consensus 417 ~gsmG~glpaaiGa~lA~p--------------dr~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~~yg~ 477 (588)
T TIGR01504 417 AGPLGWTIPAALGVCAADP--------------KRNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNAYLGL 477 (588)
T ss_pred cccccchHhHHHhhhhhCC--------------CCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHH
Confidence 3889999999999998842 6789999999999765 35677899999998888888888865
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00016 Score=84.42 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=64.2
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccch
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~ 278 (719)
|++|.|++.|+|.++|.. +++|+|++|||+++-.. -.|..|.+++|+-++||+|||+|.+-...
T Consensus 414 g~mG~glpaaiGa~la~p--------------~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~ 477 (561)
T PRK06048 414 GTMGYGFPAAIGAKVGKP--------------DKTVIDIAGDGSFQMNS--QELATAVQNDIPVIVAILNNGYLGMVRQW 477 (561)
T ss_pred cccccHHHHHHHHHHhCC--------------CCcEEEEEeCchhhccH--HHHHHHHHcCCCeEEEEEECCccHHHHHH
Confidence 789999999999999742 56899999999996553 56778899999888888898888753211
Q ss_pred ----------hhh--cchhHHHHHhccCceEEEE
Q 005021 279 ----------EIA--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 279 ----------~~~--~~~~~~~~~~a~G~~~~~v 300 (719)
... ...+..+..++||.+..+|
T Consensus 478 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 511 (561)
T PRK06048 478 QELFYDKRYSHTCIKGSVDFVKLAEAYGALGLRV 511 (561)
T ss_pred HHHHcCCcccccCCCCCCCHHHHHHHCCCeEEEE
Confidence 011 1246777888888776665
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00014 Score=85.00 Aligned_cols=87 Identities=14% Similarity=0.200 Sum_probs=66.4
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +..|+|++|||+++--. -.|..|.+++|+-++||+||++|.+-..
T Consensus 417 ~g~mG~glpaaiGa~lA~p--------------~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~~vV~NN~~y~~i~~ 480 (566)
T PRK07282 417 LGTMGFGIPAAIGAKIANP--------------DKEVILFVGDGGFQMTN--QELAILNIYKVPIKVVMLNNHSLGMVRQ 480 (566)
T ss_pred cccccchhhHhheeheecC--------------CCcEEEEEcchhhhccH--HHHHHHHHhCCCeEEEEEeCCCchHHHH
Confidence 4889999999999998842 56799999999997553 5578888999998889999999986321
Q ss_pred ---------hh-h-h-cchhHHHHHhccCceEEEE
Q 005021 278 ---------TE-I-A-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ---------~~-~-~-~~~~~~~~~~a~G~~~~~v 300 (719)
.. . . ...+..+..++||.+..+|
T Consensus 481 ~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 515 (566)
T PRK07282 481 WQESFYEGRTSESVFDTLPDFQLMAQAYGIKHYKF 515 (566)
T ss_pred HHHHHhCCCcccccCCCCCCHHHHHHHCCCEEEEE
Confidence 11 1 1 1346788888898877665
|
|
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00016 Score=83.97 Aligned_cols=88 Identities=22% Similarity=0.186 Sum_probs=64.0
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|++|.|++.|+|.++|.. +.+|+|++|||+++-- .-.|..|..++|+-++||+||++|.+-.
T Consensus 406 ~~g~mG~~lpaaiGa~la~~--------------~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~~ 469 (539)
T TIGR02418 406 GMQTLGVALPWAIGAALVRP--------------NTKVVSVSGDGGFLFS--SMELETAVRLKLNIVHIIWNDNGYNMVE 469 (539)
T ss_pred CccccccHHHHHHHHHHhCC--------------CCcEEEEEcchhhhch--HHHHHHHHHhCCCeEEEEEECCcchHHH
Confidence 35689999999999998742 5679999999999764 3456779999998788888988887532
Q ss_pred ch-hh---------hcchhHHHHHhccCceEEEE
Q 005021 277 DT-EI---------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~-~~---------~~~~~~~~~~~a~G~~~~~v 300 (719)
.. .. ....+..+..++||.+..+|
T Consensus 470 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V 503 (539)
T TIGR02418 470 FQEEMKYQRSSGVDFGPIDFVKYAESFGAKGLRV 503 (539)
T ss_pred HHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEE
Confidence 11 00 11235677777788766655
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0042 Score=68.56 Aligned_cols=181 Identities=19% Similarity=0.186 Sum_probs=125.3
Q ss_pred cccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCC
Q 005021 464 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN 543 (719)
Q Consensus 464 IaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPn 543 (719)
=+|.++++++.|.+..| -+.+..|-+.=+.+|.+.|...+.+.+|++++.. .+.+....=||+....|+...|.. +
T Consensus 54 EsE~~a~s~v~GA~~aG--ar~~TaTSg~Gl~Lm~E~l~~a~~~~~P~Vi~~~-~R~~ps~g~p~~~dq~D~~~~r~~-g 129 (365)
T COG0674 54 ESEIGAISAVIGASYAG--ARAFTATSGQGLLLMAEALGLAAGTETPLVIVVA-QRPLPSTGLPIKGDQSDLMAARDT-G 129 (365)
T ss_pred ccHHHHHHHHHHHHhhC--cceEeecCCccHHHHHHHHHHHHhccCCeEEEEe-ccCcCCCcccccccHHHHHHHHcc-C
Confidence 36899999999999999 4999898888888999999999999999888763 455545444699999999998886 7
Q ss_pred eEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEc--------------CCCCC-----CCCC----CCcccccccc---
Q 005021 544 ILMLRPADGNETAGAYKVAVA---NRKRPSILALS--------------RQKLP-----HLAG----TSIDGVEKGA--- 594 (719)
Q Consensus 544 l~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~--------------r~~~~-----~~~~----~~~~~~~~G~--- 594 (719)
..+++=+|.+|+..+-..|.+ +..-|+++.+. ++..+ .... ....+...|.
T Consensus 130 ~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 209 (365)
T COG0674 130 FPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPDYEPYTALDPSPPVLPGTEAV 209 (365)
T ss_pred ceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeeecCccccccccccccCcccccCCCCCCcCCCCCC
Confidence 777777788888775544432 13568777631 11100 0000 0000011110
Q ss_pred ---------------------------------------EEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHH-HhCCCcE
Q 005021 595 ---------------------------------------YIISDNSSGNKPDVILIGTGSELEIAAKAAEEL-RKGGKAV 634 (719)
Q Consensus 595 ---------------------------------------~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L-~~~Gi~v 634 (719)
+.+... ...+++||++|+....+.+++..+ +++|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~---~DAe~viV~~Gss~~~~~~a~~~~~~~~g~kv 286 (365)
T COG0674 210 PDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGY---EDAEIVIVAMGSSKGSTAEAVVDLLRDKGEKV 286 (365)
T ss_pred CceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecC---CCcCEEEEEeccchHhHHHHHHHHHHhcCceE
Confidence 011110 146799999998887777776655 5889999
Q ss_pred EEEecCChhhHHHHHHH
Q 005021 635 RVVSFVSWELFDEQSDA 651 (719)
Q Consensus 635 ~VId~~~l~pld~~~~~ 651 (719)
.++.++.+.||+.+.+.
T Consensus 287 g~l~vr~~rPFp~~~i~ 303 (365)
T COG0674 287 GLLKVRTLRPFPAEEIR 303 (365)
T ss_pred EEEEEEEeCCCCHHHHH
Confidence 99999999999987653
|
|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00019 Score=84.38 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=64.7
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +++|||++|||+++-. .-.|..|.+++|+-++||+||++|.+-..
T Consensus 436 ~gsmG~glpaaiGa~lA~p--------------~r~Vv~i~GDGsf~m~--~~eL~Ta~r~~lpviivV~NN~~~~~i~~ 499 (587)
T PRK06965 436 LGTMGVGLPYAMGIKMAHP--------------DDDVVCITGEGSIQMC--IQELSTCLQYDTPVKIISLNNRYLGMVRQ 499 (587)
T ss_pred cccccchHHHHHHHHHhCC--------------CCcEEEEEcchhhhcC--HHHHHHHHHcCCCeEEEEEECCcchHHHH
Confidence 3789999999999999842 5689999999999755 36777889999987778888887765321
Q ss_pred ---------hhh-h--cchhHHHHHhccCceEEEE
Q 005021 278 ---------TEI-A--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ---------~~~-~--~~~~~~~~~~a~G~~~~~v 300 (719)
... . ...+..+..++||++..+|
T Consensus 500 ~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v 534 (587)
T PRK06965 500 WQEIEYSKRYSHSYMDALPDFVKLAEAYGHVGMRI 534 (587)
T ss_pred HHHHhcCCCccccCCCCCCCHHHHHHHCCCEEEEE
Confidence 111 1 1236777888888877665
|
|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00018 Score=84.32 Aligned_cols=87 Identities=21% Similarity=0.205 Sum_probs=64.2
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +.+|+|++|||+++-. .-.|..|.+++|+=++||+||++|.+-..
T Consensus 422 ~gsmG~glpaAiGa~la~p--------------~r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~ 485 (574)
T PRK06466 422 LGTMGFGLPAAMGVKLAFP--------------DQDVACVTGEGSIQMN--IQELSTCLQYGLPVKIINLNNGALGMVRQ 485 (574)
T ss_pred cchhhchHHHHHHHHHhCC--------------CCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHH
Confidence 3789999999999998842 5689999999999755 35677799999987788888888875221
Q ss_pred h---------h-hh--cchhHHHHHhccCceEEEE
Q 005021 278 T---------E-IA--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~---------~-~~--~~~~~~~~~~a~G~~~~~v 300 (719)
. . .. ...+..+..++||.+..+|
T Consensus 486 ~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 520 (574)
T PRK06466 486 WQDMQYEGRHSHSYMESLPDFVKLAEAYGHVGIRI 520 (574)
T ss_pred HHHHhcCCceeecCCCCCCCHHHHHHHCCCeEEEE
Confidence 1 1 11 1236777778888776665
|
|
| >COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0064 Score=69.61 Aligned_cols=202 Identities=15% Similarity=0.163 Sum_probs=132.7
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcC--CEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEA--GVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~--pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
+-+++.+..|.-+..+|.|-+..| .+..+++=-.=+.++-|.+...+|... -++++...| - |.. +-|.-.|
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G--~ral~~mKhVGlNvAsDpl~s~ay~Gv~GGlviv~aDD-p--g~~--SSqneqd 130 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAG--VRALVTMKHVGLNVASDPLMSLAYAGVTGGLVIVVADD-P--GMH--SSQNEQD 130 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcC--ceeeEEecccccccchhhhhhhhhcCccccEEEEEccC-C--Ccc--cccchhH
Confidence 567788999999999999999999 588888766667799999888777543 344443222 2 111 1133345
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEcC------CCCC-------CCCCCCcccc-ccccEEE
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVAN---RKRPSILALSR------QKLP-------HLAGTSIDGV-EKGAYII 597 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~irl~r------~~~~-------~~~~~~~~~~-~~G~~~i 597 (719)
--++...-.+-|+.|+|++|+..+++.+.+- .+-|+++|... +.+. .......... ..|.|+.
T Consensus 131 sr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~ 210 (640)
T COG4231 131 SRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVR 210 (640)
T ss_pred hHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceee
Confidence 5566666777899999999999999988732 46799999632 1111 0000000001 1122221
Q ss_pred e-----------------------------cCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHH
Q 005021 598 S-----------------------------DNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQ 648 (719)
Q Consensus 598 ~-----------------------------~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~ 648 (719)
. +-.+++..++-||+.|-....+.+| |++-|++..++-+-+..||+.+
T Consensus 211 ~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeA---l~~lgl~~~~lklg~~~Plp~~ 287 (640)
T COG4231 211 VPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEA---LEDLGLDDELLKLGTPYPLPEQ 287 (640)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHH---HHHcCCCceeEEecCCcCCCHH
Confidence 1 1000012689999999999888877 4455899999999999999998
Q ss_pred HHHhhhhhccCCCceEEEEccccc
Q 005021 649 SDAYKESVLPAAVSARVSIEAGST 672 (719)
Q Consensus 649 ~~~~~~sv~~~~~~~vvvvE~~~~ 672 (719)
.++ ..++. ...++|+||...
T Consensus 288 ~i~---~F~~g-~~~vlVVEE~~P 307 (640)
T COG4231 288 LIE---NFLKG-LERVLVVEEGEP 307 (640)
T ss_pred HHH---HHHhc-CcEEEEEecCCc
Confidence 764 23333 334799999865
|
|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00013 Score=85.16 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=61.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc-
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG- 276 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~- 276 (719)
-|++|.|++.|+|.++|.. +.+|+|++|||+++-.. . .|..|..++|+-+++|+||++|.+-.
T Consensus 411 ~g~mG~~l~aaiGa~la~~--------------~~~vv~~~GDG~f~~~~-~-eL~ta~~~~l~~~~vv~NN~~~~~~~~ 474 (558)
T TIGR00118 411 LGTMGFGLPAAIGAKVAKP--------------ESTVICITGDGSFQMNL-Q-ELSTAVQYDIPVKILILNNRYLGMVRQ 474 (558)
T ss_pred cccccchhhHHHhhhhhCC--------------CCcEEEEEcchHHhccH-H-HHHHHHHhCCCeEEEEEeCCchHHHHH
Confidence 3789999999999988742 56799999999998743 3 67889999997555666666665321
Q ss_pred --------chhh-h--cchhHHHHHhccCceEEEE
Q 005021 277 --------DTEI-A--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 --------~~~~-~--~~~~~~~~~~a~G~~~~~v 300 (719)
+... . ...+..+..++||.+..+|
T Consensus 475 ~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 509 (558)
T TIGR00118 475 WQELFYEERYSHTHMGSLPDFVKLAEAYGIKGIRI 509 (558)
T ss_pred HHHHhcCCceeeccCCCCCCHHHHHHHCCCeEEEE
Confidence 0000 1 1246788888888876665
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00016 Score=84.77 Aligned_cols=88 Identities=17% Similarity=0.211 Sum_probs=64.6
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
.-|++|.|++.|+|.++|.. +++|+|++|||+++- ..-.|..|.+++|+-++||+||++|.+..
T Consensus 426 ~~gsmG~glpaaiGa~lA~p--------------~r~vv~i~GDG~f~m--~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~ 489 (578)
T PLN02573 426 QYGSIGWSVGATLGYAQAAP--------------DKRVIACIGDGSFQV--TAQDVSTMIRCGQKSIIFLINNGGYTIEV 489 (578)
T ss_pred chhhhhhhhhHHHHHHHhCC--------------CCceEEEEeccHHHh--HHHHHHHHHHcCCCCEEEEEeCCceeEEE
Confidence 35889999999999998852 578999999999964 44678889999999888999999988643
Q ss_pred ch-----hhhcchhHHHHHhccC-----ceEEEE
Q 005021 277 DT-----EIAFTENVDKRFEGLG-----WHVIWV 300 (719)
Q Consensus 277 ~~-----~~~~~~~~~~~~~a~G-----~~~~~v 300 (719)
.. ......+..+..++|| ....+|
T Consensus 490 ~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V 523 (578)
T PLN02573 490 EIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKV 523 (578)
T ss_pred eecccCccccCCCCHHHHHHHhcCcCCceeEEEe
Confidence 11 1112245667777774 555544
|
|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0002 Score=84.19 Aligned_cols=87 Identities=22% Similarity=0.197 Sum_probs=65.4
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|. .++.|||++|||+++-.. -.|..|..++|+-++||+||++|.+-..
T Consensus 429 ~gsmG~glpaaiGa~lA~--------------p~r~Vv~i~GDG~f~m~~--~EL~Ta~r~~lpvi~vV~NN~~y~~i~~ 492 (595)
T PRK09107 429 LGTMGYGLPAALGVQIAH--------------PDALVIDIAGDASIQMCI--QEMSTAVQYNLPVKIFILNNQYMGMVRQ 492 (595)
T ss_pred chhhhhhHHHHHHHHHhC--------------CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEeCCccHHHHH
Confidence 378999999999999974 257899999999997553 4588999999988888888888875321
Q ss_pred h---------h-hhc--chhHHHHHhccCceEEEE
Q 005021 278 T---------E-IAF--TENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~---------~-~~~--~~~~~~~~~a~G~~~~~v 300 (719)
. . ... ..+..+..++||.+..+|
T Consensus 493 ~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 527 (595)
T PRK09107 493 WQQLLHGNRLSHSYTEAMPDFVKLAEAYGAVGIRC 527 (595)
T ss_pred HHHHHhCCccccccCCCCCCHHHHHHHCCCeEEEE
Confidence 1 1 111 246778888888877765
|
|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00018 Score=83.74 Aligned_cols=87 Identities=20% Similarity=0.139 Sum_probs=61.9
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|.+|.|++.|+|.++|.. +++|||++|||+++-. .-.+..|.+++|+-++||+||+.|.+...
T Consensus 406 ~gsmG~~lp~aiGa~la~p--------------~r~vv~i~GDG~f~~~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~ 469 (542)
T PRK05858 406 FGCLGTGPGYALAARLARP--------------SRQVVLLQGDGAFGFS--LMDVDTLVRHNLPVVSVIGNNGIWGLEKH 469 (542)
T ss_pred ccccccchhHHHHHHHhCC--------------CCcEEEEEcCchhcCc--HHHHHHHHHcCCCEEEEEEeCCchhhHHH
Confidence 4789999999999998742 5689999999999744 34666777899987888888888876321
Q ss_pred h-hh---------h-cchhHHHHHhccCceEEEE
Q 005021 278 T-EI---------A-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~-~~---------~-~~~~~~~~~~a~G~~~~~v 300 (719)
. .. . ...+..+..++||....+|
T Consensus 470 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 503 (542)
T PRK05858 470 PMEALYGYDVAADLRPGTRYDEVVRALGGHGELV 503 (542)
T ss_pred HHHHhcCCccccccCCCCCHHHHHHHCCCeEEEe
Confidence 1 00 0 1235566667777665554
|
|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00018 Score=84.33 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=64.3
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +.+|+|++|||+++-. ...|..|.+++|+-++||+||++|.+-..
T Consensus 420 ~g~mG~glpaaiGa~la~p--------------~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~ 483 (572)
T PRK08979 420 LGTMGFGLPAAMGVKFAMP--------------DETVVCVTGDGSIQMN--IQELSTALQYDIPVKIINLNNRFLGMVKQ 483 (572)
T ss_pred cccccchhhHHHhhhhhCC--------------CCeEEEEEcchHhhcc--HHHHHHHHHcCCCeEEEEEeCCccHHHHH
Confidence 3789999999999999842 5689999999999755 35688899999988888888888875321
Q ss_pred h----------hhh--cchhHHHHHhccCceEEEE
Q 005021 278 T----------EIA--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~----------~~~--~~~~~~~~~~a~G~~~~~v 300 (719)
. ... ...+..+..++||.+..+|
T Consensus 484 ~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v 518 (572)
T PRK08979 484 WQDMIYQGRHSHSYMDSVPDFAKIAEAYGHVGIRI 518 (572)
T ss_pred HHHHHhCCcccccCCCCCCCHHHHHHHCCCeEEEE
Confidence 1 011 1245677778888766655
|
|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00019 Score=84.25 Aligned_cols=87 Identities=23% Similarity=0.235 Sum_probs=64.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +..|+|++|||+++-.. -.|..|.+++|+-++||+||++|.+-..
T Consensus 425 ~g~mG~glpaaiGa~la~p--------------~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~v~ivV~NN~~yg~i~~ 488 (585)
T PLN02470 425 LGAMGFGLPAAIGAAAANP--------------DAIVVDIDGDGSFIMNI--QELATIHVENLPVKIMVLNNQHLGMVVQ 488 (585)
T ss_pred cccccchHHHHHHHHHhCC--------------CCcEEEEEccchhhccH--HHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 3889999999999999842 56799999999997653 6777889999987788888888764211
Q ss_pred ---------h-hhhc---------chhHHHHHhccCceEEEE
Q 005021 278 ---------T-EIAF---------TENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ---------~-~~~~---------~~~~~~~~~a~G~~~~~v 300 (719)
. .... ..+..+..++||.+..+|
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v 530 (585)
T PLN02470 489 WEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARV 530 (585)
T ss_pred HHHHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEE
Confidence 0 0110 136778888888876665
|
|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00023 Score=83.53 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=63.5
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
.-|++|.|++.|+|.++|.. +++|+|++|||+++ +..-.|..|.+++|+-++||+||++|.+-.
T Consensus 428 ~~g~mG~glpaaiGaala~p--------------~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~~~~vV~NN~~y~~i~ 491 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAHP--------------NELVICISGDASFQ--MNLQELGTIAQYNLPIKIIIINNKWQGMVR 491 (585)
T ss_pred cccchhhhHHHHHHHHHhCC--------------CCeEEEEEcchhhh--hhHHHHHHHHHhCCCeEEEEEECCcchHHH
Confidence 35889999999999998842 56899999999997 445677788899998777777777666421
Q ss_pred ch---------hh--h--cchhHHHHHhccCceEEEE
Q 005021 277 DT---------EI--A--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~---------~~--~--~~~~~~~~~~a~G~~~~~v 300 (719)
.. .. . ...+..+..++||.+..+|
T Consensus 492 ~~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v 528 (585)
T CHL00099 492 QWQQAFYGERYSHSNMEEGAPDFVKLAEAYGIKGLRI 528 (585)
T ss_pred HHHHHhcCCCcccccCCCCCCCHHHHHHHCCCeEEEe
Confidence 10 00 0 1236777888888776655
|
|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00019 Score=83.55 Aligned_cols=87 Identities=25% Similarity=0.279 Sum_probs=64.4
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|.+|.|++.|+|.++|.. +.+|+|++|||+++-. .-.|..|..++|+-++||+||++|.+-..
T Consensus 404 ~g~mG~~lpaAiGa~lA~p--------------~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~ 467 (544)
T PRK07064 404 GGGIGQGLAMAIGAALAGP--------------GRKTVGLVGDGGLMLN--LGELATAVQENANMVIVLMNDGGYGVIRN 467 (544)
T ss_pred CCccccccchhhhhhhhCc--------------CCcEEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEeCChhHHHHH
Confidence 3789999999999999842 5689999999999754 35777889999987777788888875321
Q ss_pred hh----------h-hcchhHHHHHhccCceEEEE
Q 005021 278 TE----------I-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~----------~-~~~~~~~~~~~a~G~~~~~v 300 (719)
.. . ....+..+..++||.+...|
T Consensus 468 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 501 (544)
T PRK07064 468 IQDAQYGGRRYYVELHTPDFALLAASLGLPHWRV 501 (544)
T ss_pred HHHHhcCCccccccCCCCCHHHHHHHCCCeEEEe
Confidence 10 0 11346778888888876655
|
|
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00019 Score=84.06 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=65.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +++|+|++|||+++-. .-.|..+.+++|+-++||+|||+|.+-..
T Consensus 407 ~gsmG~glpaAiGa~la~p--------------~r~Vv~i~GDGsf~m~--~~eL~Tavr~~lpi~~VV~NN~~yg~i~~ 470 (575)
T TIGR02720 407 FATMGVGVPGAIAAKLNYP--------------DRQVFNLAGDGAFSMT--MQDLLTQVQYHLPVINIVFSNCTYGFIKD 470 (575)
T ss_pred cchhhchHHHHHHHHHhCC--------------CCcEEEEEcccHHHhh--HHHHHHHHHhCCCeEEEEEeCCccHHHHH
Confidence 4889999999999888742 5689999999999875 34578899999987778899999985321
Q ss_pred h-----h----h-hcchhHHHHHhccCceEEEE
Q 005021 278 T-----E----I-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~-----~----~-~~~~~~~~~~~a~G~~~~~v 300 (719)
. . . ....+..+..++||.+..+|
T Consensus 471 ~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v 503 (575)
T TIGR02720 471 EQEDTNQPLIGVDFNDADFAKIAEGVGAVGFRV 503 (575)
T ss_pred HHHHhCCCcccccCCCCCHHHHHHHCCCEEEEe
Confidence 1 0 0 11346788888888776655
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00022 Score=83.62 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=64.3
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +..|+|++|||+++-. .-.|..|.+++|+-++||+||++|.+-..
T Consensus 420 ~g~mG~glpaaiGa~la~p--------------~~~vv~i~GDG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~ 483 (574)
T PRK07979 420 LGTMGFGLPAALGVKMALP--------------EETVVCVTGDGSIQMN--IQELSTALQYELPVLVLNLNNRYLGMVKQ 483 (574)
T ss_pred ccchhhHHHHHHHHHHhCC--------------CCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCchhhHHHH
Confidence 3789999999999999842 5689999999999754 45677899999987888888888875221
Q ss_pred h---------h-hh--cchhHHHHHhccCceEEEE
Q 005021 278 T---------E-IA--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~---------~-~~--~~~~~~~~~~a~G~~~~~v 300 (719)
. . .. ...+..+..++||....+|
T Consensus 484 ~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~~v 518 (574)
T PRK07979 484 WQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQI 518 (574)
T ss_pred HHHHhcCCccccccCCCCCCHHHHHHHCCCEEEEE
Confidence 1 0 11 1246777888888766655
|
|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00017 Score=84.76 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=62.7
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|+++|.. +.+|||++|||+++-. .-.+..|.+++|+-++||+||++|.+-..
T Consensus 418 ~gsmG~~lpaaiGa~la~p--------------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~ 481 (586)
T PRK06276 418 LGTMGFGFPAAIGAKVAKP--------------DANVIAITGDGGFLMN--SQELATIAEYDIPVVICIFDNRTLGMVYQ 481 (586)
T ss_pred ccccccchhHHHhhhhhcC--------------CCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHH
Confidence 3789999999999998842 4679999999999844 34577888999986777778777764221
Q ss_pred h---------hhh---cchhHHHHHhccCceEEEE
Q 005021 278 T---------EIA---FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~---------~~~---~~~~~~~~~~a~G~~~~~v 300 (719)
. ... ...+..+..++||.+..+|
T Consensus 482 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v 516 (586)
T PRK06276 482 WQNLYYGKRQSEVHLGETPDFVKLAESYGVKADRV 516 (586)
T ss_pred HHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEE
Confidence 1 001 1246777888888776665
|
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00021 Score=83.87 Aligned_cols=87 Identities=13% Similarity=0.135 Sum_probs=64.7
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +..|+|++|||+++-.. -.|..|.+++|+-++||+||++|.+-..
T Consensus 429 ~g~mG~~lpaaiGa~la~p--------------~~~Vv~i~GDG~f~m~~--~eL~Tavr~~lpvi~vV~NN~~yg~i~~ 492 (579)
T TIGR03457 429 FGNCGYAFPTIIGAKIAAP--------------DRPVVAYAGDGAWGMSM--NEIMTAVRHDIPVTAVVFRNRQWGAEKK 492 (579)
T ss_pred cccccchHHHHHhhhhhCC--------------CCcEEEEEcchHHhccH--HHHHHHHHhCCCeEEEEEECcchHHHHH
Confidence 4789999999999999742 56899999999997653 5677899999998889999999875321
Q ss_pred hh----------h-hcc-hhHHHHHhccCceEEEE
Q 005021 278 TE----------I-AFT-ENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~----------~-~~~-~~~~~~~~a~G~~~~~v 300 (719)
.. . ... .+..+..++||.+..+|
T Consensus 493 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v 527 (579)
T TIGR03457 493 NQVDFYNNRFVGTELESELSFAGIADAMGAKGVVV 527 (579)
T ss_pred HHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEE
Confidence 10 0 011 26677777787766554
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00019 Score=84.40 Aligned_cols=62 Identities=21% Similarity=0.313 Sum_probs=49.8
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~si 274 (719)
..|++|.|++.|+|.++|.. +..|+|++|||+++-.. -.+..|.+++|+-++||+||++|.+
T Consensus 417 ~~G~mG~glpaAiGa~la~p--------------~r~Vv~i~GDG~f~m~~--~eL~Ta~~~~lpv~~vV~NN~~~g~ 478 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAADP--------------DRNVVALSGDYDFQFLI--EELAVGAQFNLPYIHVLVNNAYLGL 478 (591)
T ss_pred ccccccchhhhHHhhhhhCC--------------CCcEEEEEccchhhcCH--HHHHHHHHhCCCeEEEEEeCCchhH
Confidence 35889999999999999742 56899999999996542 3466788999987888888887765
|
|
| >COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00014 Score=80.90 Aligned_cols=65 Identities=25% Similarity=0.360 Sum_probs=53.3
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-||.|-.++.|+|.++|.+ ++|++.++|||++|- .---+...-+|+|+++||++||++|.|..-
T Consensus 410 WGSIG~t~pAalGa~~A~~--------------drR~IL~iGDGs~Ql--TvQEiStmiR~gl~p~ifvlNN~GYTIEr~ 473 (557)
T COG3961 410 WGSIGYTLPAALGAALAAP--------------DRRVILFIGDGSLQL--TVQEISTMIRWGLKPIIFVLNNDGYTIERA 473 (557)
T ss_pred hhhcccccHhhhhhhhcCC--------------CccEEEEEcCchhhh--hHHHHHHHHHcCCCcEEEEEcCCCcEEEeh
Confidence 5788999999999999864 789999999999974 223355556889999999999999998654
Q ss_pred h
Q 005021 278 T 278 (719)
Q Consensus 278 ~ 278 (719)
.
T Consensus 474 I 474 (557)
T COG3961 474 I 474 (557)
T ss_pred h
Confidence 4
|
|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00025 Score=83.11 Aligned_cols=87 Identities=20% Similarity=0.227 Sum_probs=64.8
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +.+|+|++|||+++=.. -.|..|..++|+-++||+||++|.+-..
T Consensus 420 ~g~mG~glpaAiGa~la~p--------------~~~vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~ivV~NN~~yg~i~~ 483 (572)
T PRK06456 420 MGTMGFGLPAAMGAKLARP--------------DKVVVDLDGDGSFLMTG--TNLATAVDEHIPVISVIFDNRTLGLVRQ 483 (572)
T ss_pred cccccchhHHHHHHHHhCC--------------CCeEEEEEccchHhcch--HHHHHHHHhCCCeEEEEEECCchHHHHH
Confidence 4899999999999999842 56899999999997654 4667888999987888888888886431
Q ss_pred hh----------h-h-cchhHHHHHhccCceEEEE
Q 005021 278 TE----------I-A-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~----------~-~-~~~~~~~~~~a~G~~~~~v 300 (719)
.. . . ...+..+..++||.+..+|
T Consensus 484 ~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v 518 (572)
T PRK06456 484 VQDLFFGKRIVGVDYGPSPDFVKLAEAFGALGFNV 518 (572)
T ss_pred HHHHhhCCCcccccCCCCCCHHHHHHHCCCeeEEe
Confidence 10 0 0 1246777778888766654
|
|
| >cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0002 Score=71.93 Aligned_cols=61 Identities=21% Similarity=0.248 Sum_probs=45.8
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCc
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~si 274 (719)
|.+|.|++.|+|.++|. .+.+|||++|||++. .+....+..|.+++++=+++|+||+.|.+
T Consensus 51 g~mG~glpaAiGa~la~--------------p~r~Vv~i~GDGs~f-~m~~~eL~ta~~~~lpv~iiVlnN~~yg~ 111 (193)
T cd03375 51 TLHGRALAVATGVKLAN--------------PDLTVIVVSGDGDLA-AIGGNHFIHAARRNIDITVIVHNNQIYGL 111 (193)
T ss_pred hhhccHHHHHHHHHHhC--------------CCCeEEEEeccchHh-hccHHHHHHHHHhCCCeEEEEEcCccccc
Confidence 77899999999999874 267899999999941 33345666778889875556667666654
|
In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity. |
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00028 Score=82.71 Aligned_cols=87 Identities=20% Similarity=0.165 Sum_probs=65.9
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|.+|.|++.|+|.++|. .+..|+|++|||+++-. ...|..|.+++|+-++||+||++|.+-..
T Consensus 407 ~g~mG~glpaaiGa~la~--------------p~~~Vv~i~GDGsf~m~--~~eL~Ta~r~~l~~iivV~NN~~~g~i~~ 470 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIAF--------------PDRQAIAICGDGGFSMV--MQDFVTAVKYKLPIVVVVLNNQQLAFIKY 470 (576)
T ss_pred chhhhhhHHHHHHHHHhC--------------CCCcEEEEEcccHHhhh--HHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 488999999999999864 25679999999999865 45667899999987888899999885321
Q ss_pred hh---------h-hcchhHHHHHhccCceEEEE
Q 005021 278 TE---------I-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~---------~-~~~~~~~~~~~a~G~~~~~v 300 (719)
.. . ....+..+..++||.+..+|
T Consensus 471 ~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 503 (576)
T PRK08611 471 EQQAAGELEYAIDLSDMDYAKFAEACGGKGYRV 503 (576)
T ss_pred HHHHhcCCcccccCCCCCHHHHHHHCCCeEEEe
Confidence 10 0 11346788888888877765
|
|
| >TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00024 Score=82.60 Aligned_cols=83 Identities=13% Similarity=0.097 Sum_probs=61.9
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +.+|+|++|||+++-. ...|..|.+++|+-++||+|||+|.+-..
T Consensus 403 ~g~mG~glpaaiGa~la~p--------------~~~vv~i~GDG~f~m~--~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~ 466 (539)
T TIGR03393 403 WGSIGYTLPAAFGAQTACP--------------NRRVILLIGDGSAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERA 466 (539)
T ss_pred hhhhhhHHHHHHHHHhcCC--------------CCCeEEEEcCcHHHhH--HHHHHHHHHcCCCCEEEEEeCCceEEEEe
Confidence 4889999999999998742 5789999999999644 46788899999998899999999875321
Q ss_pred h-h------hhcchhHHHHHhccCce
Q 005021 278 T-E------IAFTENVDKRFEGLGWH 296 (719)
Q Consensus 278 ~-~------~~~~~~~~~~~~a~G~~ 296 (719)
. . .....+..+..++||.+
T Consensus 467 ~~~~~~~~~~~~~~df~~la~a~G~~ 492 (539)
T TIGR03393 467 IHGAEQRYNDIALWNWTHLPQALSLD 492 (539)
T ss_pred ecCCCCCcCcCCCCCHHHHHHHcCCC
Confidence 1 0 11124566677777763
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria. |
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00027 Score=82.41 Aligned_cols=87 Identities=21% Similarity=0.159 Sum_probs=62.3
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|.+|.|++.|+|.++|.. +..|+|++|||+++-. .-.|..|..++|+-++||+||++|.+-..
T Consensus 413 ~g~mG~~lpaaiGa~la~p--------------~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~~~~~~ 476 (552)
T PRK08617 413 MQTLGVALPWAIAAALVRP--------------GKKVVSVSGDGGFLFS--AMELETAVRLKLNIVHIIWNDGHYNMVEF 476 (552)
T ss_pred cccccccccHHHhhHhhcC--------------CCcEEEEEechHHhhh--HHHHHHHHHhCCCeEEEEEECCccchHHH
Confidence 4789999999999998742 5689999999999844 45667799999986778888888875321
Q ss_pred hhh----------hcchhHHHHHhccCceEEEE
Q 005021 278 TEI----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~~----------~~~~~~~~~~~a~G~~~~~v 300 (719)
... ....+..+..++||.+..+|
T Consensus 477 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 509 (552)
T PRK08617 477 QEEMKYGRSSGVDFGPVDFVKYAESFGAKGLRV 509 (552)
T ss_pred HHHhhcCCcccCCCCCCCHHHHHHHCCCeEEEE
Confidence 100 01235667777777766554
|
|
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00042 Score=80.81 Aligned_cols=88 Identities=18% Similarity=0.276 Sum_probs=65.1
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. .+++|+|++|||+++-. ...|..|.+++|+-++||+||++|.+-..
T Consensus 395 ~g~mG~glpaaiGa~la~p-------------~~~~Vv~i~GDGsf~~~--~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~ 459 (549)
T PRK06457 395 LGSMGIGVPGSVGASFAVE-------------NKRQVISFVGDGGFTMT--MMELITAKKYDLPVKIIIYNNSKLGMIKF 459 (549)
T ss_pred cchhhhhHHHHHHHHhcCC-------------CCCeEEEEEcccHHhhh--HHHHHHHHHHCCCeEEEEEECCccchHHH
Confidence 5899999999999998741 14689999999999755 35567899999988888899999875321
Q ss_pred h---------hh-hcchhHHHHHhccCceEEEE
Q 005021 278 T---------EI-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~---------~~-~~~~~~~~~~~a~G~~~~~v 300 (719)
. +. ....+..+..++||.+..+|
T Consensus 460 ~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 492 (549)
T PRK06457 460 EQEVMGYPEWGVDLYNPDFTKIAESIGFKGFRL 492 (549)
T ss_pred HHHHhcCCcccccCCCCCHHHHHHHCCCeEEEe
Confidence 0 00 11236777788888876665
|
|
| >PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00016 Score=84.64 Aligned_cols=86 Identities=15% Similarity=0.051 Sum_probs=60.3
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|.+|.+++.|+|.++| . +++|+|++|||+++-. .-.+..|..++|+-++||+||++|.+-..
T Consensus 424 ~~~~G~~lpaaiGaala-~--------------~~~vv~i~GDGsf~~~--~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~ 486 (568)
T PRK07449 424 ASGIDGLLSTAAGVARA-S--------------AKPTVALIGDLSFLHD--LNGLLLLKQVPAPLTIVVVNNNGGGIFSL 486 (568)
T ss_pred ccchhhHHHHHHHHHhc-C--------------CCCEEEEechHHhhcC--cHHHHhhcccCCCeEEEEEECCCCccccC
Confidence 36788999999999987 2 4569999999999954 23466688999987888888888774321
Q ss_pred h---------hh----hcchhHHHHHhccCceEEEE
Q 005021 278 T---------EI----AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~---------~~----~~~~~~~~~~~a~G~~~~~v 300 (719)
. +. ....+..+..++||++..+|
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~V 522 (568)
T PRK07449 487 LPQPEEEPVFERFFGTPHGVDFAHAAAMYGLEYHRP 522 (568)
T ss_pred CCCCCCcchhhHhhcCCCCCCHHHHHHHcCCCccCC
Confidence 1 00 11235677777888765443
|
|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00028 Score=82.22 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=63.3
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccch
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~ 278 (719)
|++|.|++.|+|.++|.. +..|+|++|||+++-.. -.|..|.+++++=+++|+||++|.+-...
T Consensus 401 g~mG~glpaAiGa~la~p--------------~~~vv~i~GDG~f~~~~--~eL~ta~~~~l~v~ivV~NN~~~~~~~~~ 464 (548)
T PRK08978 401 GTMGFGLPAAIGAQVARP--------------DDTVICVSGDGSFMMNV--QELGTIKRKQLPVKIVLLDNQRLGMVRQW 464 (548)
T ss_pred hhhhchHHHHHHHHHhCC--------------CCcEEEEEccchhhccH--HHHHHHHHhCCCeEEEEEeCCccHHHHHH
Confidence 889999999999998842 56899999999997653 45778889999877788888888753211
Q ss_pred h---------hh---cchhHHHHHhccCceEEEE
Q 005021 279 E---------IA---FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 279 ~---------~~---~~~~~~~~~~a~G~~~~~v 300 (719)
. .. ...+..+..++||.+..+|
T Consensus 465 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v 498 (548)
T PRK08978 465 QQLFFDERYSETDLSDNPDFVMLASAFGIPGQTI 498 (548)
T ss_pred HHHHhCCcceecCCCCCCCHHHHHHHCCCeEEEE
Confidence 0 01 1235777778888776665
|
|
| >cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00029 Score=72.99 Aligned_cols=60 Identities=22% Similarity=0.204 Sum_probs=43.6
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCC-CC
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNH-IS 273 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~-~s 273 (719)
.|++|.|++.|+|.+++. .+..|||++|||++ -.+....|..|.+++++ +++||-||+ ++
T Consensus 61 ~gsmG~GlpaAiGa~~a~--------------p~r~VV~i~GDG~~-~~m~~~eL~ta~~~~~p-v~~vVlNN~~yg 121 (235)
T cd03376 61 AAAVASGIEAALKALGRG--------------KDITVVAFAGDGGT-ADIGFQALSGAAERGHD-ILYICYDNEAYM 121 (235)
T ss_pred HHHHHHHHHHHHHHhccC--------------CCCeEEEEEcCchH-HhhHHHHHHHHHHcCCC-eEEEEECCcccc
Confidence 468888888888875542 25789999999995 33456778899999986 555555554 44
|
PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity. |
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00032 Score=82.84 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=62.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|.+|.|++.|+|.++|.. ++.|||++|||+++ +..-.|..|.+++|+=++||+||+.|.+-..
T Consensus 433 ~g~mG~glpaAiGA~lA~p--------------~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpvi~vV~NN~~~g~i~~ 496 (616)
T PRK07418 433 LGTMGFGMPAAMGVKVALP--------------DEEVICIAGDASFL--MNIQELGTLAQYGINVKTVIINNGWQGMVRQ 496 (616)
T ss_pred ccccccHHHHHHHHHHhCC--------------CCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEECCcchHHHH
Confidence 4889999999999998742 56799999999998 4445577899999986667777777764221
Q ss_pred hh----------h-h--cchhHHHHHhccCceEEEE
Q 005021 278 TE----------I-A--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~----------~-~--~~~~~~~~~~a~G~~~~~v 300 (719)
.. . . ...+..+..++||.+..+|
T Consensus 497 ~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V 532 (616)
T PRK07418 497 WQESFYGERYSASNMEPGMPDFVKLAEAFGVKGMVI 532 (616)
T ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHCCCeEEEe
Confidence 10 0 0 1245777788888777665
|
|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00041 Score=81.65 Aligned_cols=88 Identities=14% Similarity=0.088 Sum_probs=60.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhc-----CCCcEEEEEeCCCC
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHL-----GLGKLIAFYDDNHI 272 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~-----~L~nli~ivddN~~ 272 (719)
-|++|.|++.|+|.++|.. +++|+|++|||+++-... ..|..|.++ +|+-++||+||++|
T Consensus 414 ~g~mG~glpaaiGa~la~p--------------~~~Vv~i~GDG~f~m~~~-~EL~Ta~r~~~~~~~lpviivV~NN~~~ 478 (597)
T PRK08273 414 LATMGPAVPYAIAAKFAHP--------------DRPVIALVGDGAMQMNGM-AELITVAKYWRQWSDPRLIVLVLNNRDL 478 (597)
T ss_pred cccccchHHHHHHHHHhCC--------------CCcEEEEEcchhHhccch-HHHHHHHHHhhcccCCCEEEEEEeCCcc
Confidence 3789999999999999842 578999999999954422 334444555 88767777777777
Q ss_pred Ccccch---------h-h---hcchhHHHHHhccCceEEEE
Q 005021 273 SIDGDT---------E-I---AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 273 sis~~~---------~-~---~~~~~~~~~~~a~G~~~~~v 300 (719)
.+-... . . ....+..+..++||+...+|
T Consensus 479 ~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 519 (597)
T PRK08273 479 NQVTWEQRVMEGDPKFEASQDLPDVPYARFAELLGLKGIRV 519 (597)
T ss_pred hHHHHHHHHhcCCCcccccccCCCCCHHHHHHHCCCEEEEE
Confidence 542111 0 0 11245788889999887776
|
|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00032 Score=82.43 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=64.0
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
.-|.+|.|++.|+|.++|.. +++|+|++|||+++-. ..| +..|.+++|+-++||+||++|.+-.
T Consensus 433 ~~g~mG~glp~aiGa~la~p--------------~r~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpv~ivV~NN~~y~~~~ 496 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIACP--------------DRPVVGFAGDGAWGIS-MNE-VMTAVRHNWPVTAVVFRNYQWGAEK 496 (588)
T ss_pred cccccccHHHHHHHHHHhCC--------------CCcEEEEEcCchHhcc-HHH-HHHHHHhCCCeEEEEEeCchhHHHH
Confidence 34889999999999998742 5689999999999887 454 5579999998777777888887532
Q ss_pred chh----------hhc--chhHHHHHhccCceEEEE
Q 005021 277 DTE----------IAF--TENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~----------~~~--~~~~~~~~~a~G~~~~~v 300 (719)
... ... ..++.+..++||.+..+|
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 532 (588)
T PRK07525 497 KNQVDFYNNRFVGTELDNNVSYAGIAEAMGAEGVVV 532 (588)
T ss_pred HHHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEE
Confidence 110 001 236777788888776654
|
|
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00055 Score=79.54 Aligned_cols=85 Identities=13% Similarity=0.191 Sum_probs=64.9
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccch
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~ 278 (719)
|++|.|++.|+|.++|. +++++|++|||+++- ..-.|..|.+++|+-++||+||++|.+-...
T Consensus 403 g~mG~glpaaiGa~lA~---------------~~r~v~i~GDG~f~m--~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~ 465 (535)
T TIGR03394 403 AGMGFGVPAGIGAQCTS---------------GKRILTLVGDGAFQM--TGWELGNCRRLGIDPIVILFNNASWEMLRVF 465 (535)
T ss_pred chhhhHHHHHHHHHhCC---------------CCCeEEEEeChHHHh--HHHHHHHHHHcCCCcEEEEEECCccceeehh
Confidence 88999999999999883 235688999999964 4567888999999988899999998864321
Q ss_pred h------hhcchhHHHHHhccCceEEEE
Q 005021 279 E------IAFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 279 ~------~~~~~~~~~~~~a~G~~~~~v 300 (719)
. .....+..+..++||.+..+|
T Consensus 466 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v 493 (535)
T TIGR03394 466 QPESAFNDLDDWRFADMAAGMGGDGVRV 493 (535)
T ss_pred ccCCCcccCCCCCHHHHHHHcCCCceEe
Confidence 1 112357788888888876665
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00052 Score=81.03 Aligned_cols=87 Identities=18% Similarity=0.285 Sum_probs=63.6
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|++|.|++.|+|.++|.. +..|+|++|||+++-. .-.|..|.+++|+-++||+||++|.+-..
T Consensus 446 ~G~mG~glpaaiGa~la~p--------------~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~ 509 (612)
T PRK07789 446 LGTMGYAVPAAMGAKVGRP--------------DKEVWAIDGDGCFQMT--NQELATCAIEGIPIKVALINNGNLGMVRQ 509 (612)
T ss_pred cccccchhhhHHhhhccCC--------------CCcEEEEEcchhhhcc--HHHHHHHHHcCCCeEEEEEECCchHHHHH
Confidence 4789999999999998842 5679999999999644 46777889999987888888888875321
Q ss_pred hh----------hh-c-----chhHHHHHhccCceEEEE
Q 005021 278 TE----------IA-F-----TENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~----------~~-~-----~~~~~~~~~a~G~~~~~v 300 (719)
.. .. . ..+..+..++||....+|
T Consensus 510 ~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V 548 (612)
T PRK07789 510 WQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRC 548 (612)
T ss_pred HHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEE
Confidence 10 00 0 135677778888766655
|
|
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00097 Score=77.82 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=61.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcc--
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISID-- 275 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis-- 275 (719)
-|++|.|++.|+|.++|. +++|+|++|||+++-.. ..|..|.+++|+-++||+||++|...
T Consensus 416 ~gsmG~~lpaaiGaala~---------------~~~vv~i~GDGsf~m~~--~EL~Ta~r~~l~v~~vV~NN~~~~~~~~ 478 (554)
T TIGR03254 416 WGVMGIGMGYAIAAAVET---------------GKPVVALEGDSAFGFSG--MEVETICRYNLPVCVVIFNNGGIYRGDD 478 (554)
T ss_pred CCcCCchHHHHHHHHhcC---------------CCcEEEEEcCchhcccH--HHHHHHHHcCCCEEEEEEeChhhhhhhh
Confidence 388999999999999972 35799999999997653 34778889999877777777766221
Q ss_pred ----c--chhhh--cchhHHHHHhccCceEEEE
Q 005021 276 ----G--DTEIA--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 276 ----~--~~~~~--~~~~~~~~~~a~G~~~~~v 300 (719)
+ ..... ...+..+..++||.+..+|
T Consensus 479 ~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v 511 (554)
T TIGR03254 479 VNVVGADPAPTVLVHGARYDKMMKAFGGVGYNV 511 (554)
T ss_pred hhhcCCCCCccccCCCCCHHHHHHHCCCeEEEe
Confidence 0 00011 2346778888888876665
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00083 Score=78.67 Aligned_cols=86 Identities=22% Similarity=0.214 Sum_probs=60.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCC--Ccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI--SID 275 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~--sis 275 (719)
.|++|.|++.|+|.++|. ++.|+|++|||+++=-. ..|..|.+++|+-++||+||+++ ...
T Consensus 423 ~gsmG~glpaaiGa~la~---------------~~~vv~i~GDG~f~m~~--~EL~Ta~r~~lpi~~vV~NN~~~~~~~~ 485 (569)
T PRK09259 423 WGVMGIGMGYAIAAAVET---------------GKPVVAIEGDSAFGFSG--MEVETICRYNLPVTVVIFNNGGIYRGDD 485 (569)
T ss_pred CccccccHHHHHHHHhcC---------------CCcEEEEecCccccccH--HHHHHHHHcCCCEEEEEEeChhHHHHHH
Confidence 488999999999999872 35699999999997553 34778899999766666666654 110
Q ss_pred ----c--ch-hh--hcchhHHHHHhccCceEEEE
Q 005021 276 ----G--DT-EI--AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 276 ----~--~~-~~--~~~~~~~~~~~a~G~~~~~v 300 (719)
. .. .. ....+..+..++||+...+|
T Consensus 486 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 519 (569)
T PRK09259 486 VNLSGAGDPSPTVLVHHARYDKMMEAFGGVGYNV 519 (569)
T ss_pred HHhhcCCCccccccCCCCCHHHHHHHCCCeEEEE
Confidence 0 00 01 11346778888889877665
|
|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0011 Score=77.05 Aligned_cols=89 Identities=25% Similarity=0.281 Sum_probs=63.0
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcc
Q 005021 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISID 275 (719)
Q Consensus 196 ~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis 275 (719)
..-|.+|.|++.|+|.++|.. +..|+|++|||+++ +....|..|..++++=+++|+||+.|.+-
T Consensus 405 ~~~GtMG~glPaAIGAkla~P--------------~r~Vv~i~GDG~F~--m~~qEL~Ta~r~~lpv~ivv~nN~~~g~v 468 (550)
T COG0028 405 GGLGTMGFGLPAAIGAKLAAP--------------DRKVVAIAGDGGFM--MNGQELETAVRYGLPVKIVVLNNGGYGMV 468 (550)
T ss_pred CCCccccchHHHHHHHHhhCC--------------CCcEEEEEcccHHh--ccHHHHHHHHHhCCCEEEEEEECCccccc
Confidence 356889999999999998742 57899999999986 44667778889999545555666656643
Q ss_pred cchh-hh---------cchh-HHHHHhccCceEEEE
Q 005021 276 GDTE-IA---------FTEN-VDKRFEGLGWHVIWV 300 (719)
Q Consensus 276 ~~~~-~~---------~~~~-~~~~~~a~G~~~~~v 300 (719)
.... .. .... ..+..++||.+..+|
T Consensus 469 ~~~q~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v 504 (550)
T COG0028 469 RQWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRV 504 (550)
T ss_pred hHHHHHhcCCCcceeecCCccHHHHHHHcCCeeEEe
Confidence 2221 11 1122 778889999988776
|
|
| >PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0018 Score=66.85 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=78.8
Q ss_pred ccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCC
Q 005021 463 GVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMP 542 (719)
Q Consensus 463 GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iP 542 (719)
.-.|..+++++.|.|..|. |.++.+=+.=+.++.|.|...+...+|++++.. .+.+.+..+++|+...|+-+.+. -
T Consensus 42 ~E~E~~A~~~~~GAs~aG~--ra~t~ts~~Gl~lm~e~l~~a~~~~~P~V~~~~-~R~g~~~g~~~~~~q~D~~~~~d-~ 117 (230)
T PF01855_consen 42 AESEHAAMEAAIGASAAGA--RAMTATSGPGLNLMAEPLYWAAGTELPIVIVVV-QRAGPSPGLSTQPEQDDLMAARD-S 117 (230)
T ss_dssp -SSHHHHHHHHHHHHHTT----EEEEEECCHHHHHCCCHHHHHHTT--EEEEEE-EB---SSSB--SB-SHHHHHTTT-S
T ss_pred ecchHHHHHHHHHHHhcCC--ceEEeecCCcccccHhHHHHHHHcCCCEEEEEE-ECCCCCCCCcCcCChhHHHHHHh-c
Confidence 4679999999999999994 999988777788888998888999999888763 45555555789999999888774 5
Q ss_pred CeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEc
Q 005021 543 NILMLRPADGNETAGAYKVAVA---NRKRPSILALS 575 (719)
Q Consensus 543 nl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~ 575 (719)
++.|+.|+|.+|+..+...|.+ +...|++++..
T Consensus 118 ~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~D 153 (230)
T PF01855_consen 118 GWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFD 153 (230)
T ss_dssp S-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred CeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 6779999999999998877752 24689998874
|
This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B .... |
| >cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.001 Score=69.12 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=56.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccC-hhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM-EGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~-eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
.|.+|.|++.|+|.++|..... . .+..|||+.|||++. -| +.|-+ .+..++++=+++|+||+.+..-+
T Consensus 63 ~g~mG~GlpaAiGA~~a~~~~~----~-----p~~~Vv~i~GDG~~~~~g-~~~l~-ta~~~~l~i~ivVlNN~~yg~~~ 131 (237)
T cd02018 63 ANAVASGLKRGLKARFPKDREL----D-----KKKDVVVIGGDGATYDIG-FGALS-HSLFRGEDITVIVLDNEVYSNTG 131 (237)
T ss_pred HHHHHHHHHHHHHhhccccccc----C-----CCCcEEEEeCchHHHhcc-HHHHH-HHHHcCCCeEEEEECCccccCCC
Confidence 4899999999999988732110 1 267899999999874 23 22333 33458886455556666555332
Q ss_pred chhh-----------------hcchhHHHHHhccCceEEE
Q 005021 277 DTEI-----------------AFTENVDKRFEGLGWHVIW 299 (719)
Q Consensus 277 ~~~~-----------------~~~~~~~~~~~a~G~~~~~ 299 (719)
.... ....++.+..+++|...+.
T Consensus 132 ~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~ 171 (237)
T cd02018 132 GQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVA 171 (237)
T ss_pred CCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEE
Confidence 1110 1124688888888887664
|
Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors. |
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00088 Score=78.80 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=61.9
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|.+|.|++.|+|.++|. .+.+|+|++|||++.-.- ...|..|.+++++=+++|+||+.+.+-+.
T Consensus 402 ~~~mG~~~~~AiGa~~a~--------------p~~~Vv~i~GDG~f~~~g-~~eL~tav~~~~~i~~vVlnN~~~g~~~~ 466 (595)
T TIGR03336 402 TLCMGASIGVASGLSKAG--------------EKQRIVAFIGDSTFFHTG-IPGLINAVYNKANITVVILDNRITAMTGH 466 (595)
T ss_pred eeccCchHHHHhhhhhcC--------------CCCCEEEEeccchhhhcC-HHHHHHHHHcCCCeEEEEEcCcceeccCC
Confidence 588999999999999873 256799999999997321 12445588888875667777777776442
Q ss_pred hhh-----------hcchhHHHHHhccCceEEEE
Q 005021 278 TEI-----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~~-----------~~~~~~~~~~~a~G~~~~~v 300 (719)
... ....++.+..+++|++...|
T Consensus 467 q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v 500 (595)
T TIGR03336 467 QPNPGTGVTGMGEATKEISIEELCRASGVEFVEV 500 (595)
T ss_pred CCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEE
Confidence 110 01236788888899887765
|
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. |
| >PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0011 Score=71.03 Aligned_cols=61 Identities=23% Similarity=0.234 Sum_probs=45.1
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCc
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~si 274 (719)
|..|.+++.|+|+++|.. +..|||+.|||++. ++....|..|.+.+++=+++|+||+.|+.
T Consensus 70 g~mG~alpaAiGaklA~p--------------d~~VV~i~GDG~~~-~mg~~eL~tA~r~nl~i~vIV~NN~~YG~ 130 (301)
T PRK05778 70 TLHGRAIAFATGAKLANP--------------DLEVIVVGGDGDLA-SIGGGHFIHAGRRNIDITVIVENNGIYGL 130 (301)
T ss_pred hhhccHHHHHHHHHHHCC--------------CCcEEEEeCccHHH-hccHHHHHHHHHHCCCcEEEEEeCchhhc
Confidence 557999999999998842 67899999999972 22234566788999875556666666654
|
|
| >PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0022 Score=67.93 Aligned_cols=84 Identities=17% Similarity=0.071 Sum_probs=55.9
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccc-ccChhHHHHHHHHhhhcCCCcEEEEEeCC-CCCccc
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG-CQMEGIANEASSLAGHLGLGKLIAFYDDN-HISIDG 276 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG-~~~eG~~~EAln~A~~~~L~nli~ivddN-~~sis~ 276 (719)
|..|.+++.|+|+++|.. +..|||++||| ++.-|. ..|..|.+.+++ +++|+-|| .|..-+
T Consensus 59 ~~~G~alp~A~GaklA~P--------------d~~VV~i~GDG~~f~ig~--~eL~tA~rrn~~-i~vIV~nN~~ygmtg 121 (279)
T PRK11866 59 GIHGRVLPIATGVKWANP--------------KLTVIGYGGDGDGYGIGL--GHLPHAARRNVD-ITYIVSNNQVYGLTT 121 (279)
T ss_pred cccccHHHHHHHHHHHCC--------------CCcEEEEECChHHHHccH--HHHHHHHHHCcC-cEEEEEEChhhhhhc
Confidence 456999999999999842 56799999999 576663 457788999986 55555444 444322
Q ss_pred -----ch--hh----h--c----chhHHHHHhccCceEEE
Q 005021 277 -----DT--EI----A--F----TENVDKRFEGLGWHVIW 299 (719)
Q Consensus 277 -----~~--~~----~--~----~~~~~~~~~a~G~~~~~ 299 (719)
.+ +. . . ..++.+..+++|...+.
T Consensus 122 gQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va 161 (279)
T PRK11866 122 GQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVA 161 (279)
T ss_pred ccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEE
Confidence 11 00 0 0 02667777888876554
|
|
| >PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0014 Score=69.40 Aligned_cols=60 Identities=20% Similarity=0.289 Sum_probs=43.5
Q ss_pred CcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCc
Q 005021 200 PLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (719)
Q Consensus 200 ~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~si 274 (719)
+.|.+++.|+|+++|.. +..|||++|||+++- +.-..+..|.+++++=+++|+||+.|.+
T Consensus 69 ~~G~alPaAiGaklA~P--------------dr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGm 128 (277)
T PRK09628 69 THGRAVAYATGIKLANP--------------DKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGL 128 (277)
T ss_pred ccccHHHHHHHHHHHCC--------------CCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhc
Confidence 45899999999999842 678999999999753 2222344578888875666666666665
|
|
| >TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0012 Score=70.22 Aligned_cols=59 Identities=24% Similarity=0.306 Sum_probs=42.8
Q ss_pred cchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCc
Q 005021 201 LGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (719)
Q Consensus 201 lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~si 274 (719)
.|.+++.|+|+++|. .+..|||++|||++ -++....+..|.+.+++=+++|+||+.|++
T Consensus 55 mG~alPaAiGaklA~--------------Pd~~VVai~GDG~f-~~mg~~eL~tA~r~nl~I~vIVlNN~~yGm 113 (287)
T TIGR02177 55 HGRALPVATGIKLAN--------------PHLKVIVVGGDGDL-YGIGGNHFVAAGRRNVDITVIVHDNQVYGL 113 (287)
T ss_pred cccHHHHHHHHHHHC--------------CCCcEEEEeCchHH-HhccHHHHHHHHHhCcCeEEEEEECHHHHh
Confidence 489999999999874 26789999999996 334455677888999864444445544443
|
Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes. |
| >PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0015 Score=69.53 Aligned_cols=60 Identities=23% Similarity=0.260 Sum_probs=46.1
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccc-cChhHHHHHHHHhhhcCCCcEEEEEeCCCCCc
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGC-QMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~-~~eG~~~EAln~A~~~~L~nli~ivddN~~si 274 (719)
|..|.+++.|+|+++|. .+..|||++|||+ ++-| ...+..|..++++=+++|+||+.|.+
T Consensus 69 g~mG~alpaAiGaklA~--------------Pd~~VV~i~GDG~~f~mg--~~eL~tA~r~nl~i~vIV~NN~~yGm 129 (286)
T PRK11867 69 TIHGRALAIATGLKLAN--------------PDLTVIVVTGDGDALAIG--GNHFIHALRRNIDITYILFNNQIYGL 129 (286)
T ss_pred hhhhcHHHHHHHHHHhC--------------CCCcEEEEeCccHHHhCC--HHHHHHHHHhCCCcEEEEEeCHHHhh
Confidence 56799999999999984 2678999999995 6654 33566788889876667777777765
|
|
| >KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0027 Score=70.71 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=69.3
Q ss_pred CCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcE
Q 005021 184 GHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKL 263 (719)
Q Consensus 184 g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nl 263 (719)
.||... --....--|+.|-.++.++|.|.|.. +++|+.++|||++|+=. .| +..+-+|+|+..
T Consensus 401 ~fP~g~-~~~~q~~wgsIG~svga~lG~a~a~~--------------e~rvilfiGDGs~qlTv-Qe-iStmir~gl~~~ 463 (561)
T KOG1184|consen 401 KFPKGC-GYESQMQWGSIGWSVGATLGYAQAAP--------------EKRVILFIGDGSFQLTV-QE-ISTMIRWGLKPI 463 (561)
T ss_pred cccccc-ceEEEEEEeeccccchhhhhhhhccC--------------CceEEEEecCccceeeH-HH-HHHHHhcCCCcE
Confidence 455531 22334567899999999999998863 68999999999998643 33 456678999999
Q ss_pred EEEEeCCCCCcccchh-----hhcchhHHHHHhccCc
Q 005021 264 IAFYDDNHISIDGDTE-----IAFTENVDKRFEGLGW 295 (719)
Q Consensus 264 i~ivddN~~sis~~~~-----~~~~~~~~~~~~a~G~ 295 (719)
||++|+++|.|..-.. ...+.+..+.+++||-
T Consensus 464 if~~NN~GYTIE~~IH~~~Yn~I~~Wd~~~l~~afg~ 500 (561)
T KOG1184|consen 464 IFLINNGGYTIEVEIHDGPYNDIQNWDYTALLEAFGA 500 (561)
T ss_pred EEEEeCCceEEEEeecCCCccccccchHHHHHHhhcC
Confidence 9999999999875442 1224566777777764
|
|
| >cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.019 Score=55.23 Aligned_cols=115 Identities=20% Similarity=0.195 Sum_probs=81.8
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCcc-EEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIP-YCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~P-v~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
-|++.+ ..|+.++.+|.|.++.+. +| ++. +..+=+..+.+.|.+....+.|++++....+ .....-.+||...+
T Consensus 35 ~~~i~~-~~E~~A~~~A~g~~~~~~--~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~~~~-~~~~~~~~~q~~d~ 110 (155)
T cd07035 35 IRYILV-RHEQGAVGMADGYARATG--KPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRP-TAGEGRGAFQEIDQ 110 (155)
T ss_pred CEEEEe-CCHHHHHHHHHHHHHHHC--CCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeCCCc-cccccCCcccccCH
Confidence 355555 699999999999999863 44 443 4455566777888888788999999873322 22333334777777
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSR 576 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r 576 (719)
..+++.+-.. .+...+.+++...+..|++. .++|++|.+|+
T Consensus 111 ~~~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip~ 155 (155)
T cd07035 111 VALFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155 (155)
T ss_pred HHHHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEecC
Confidence 7888887654 56777888888888877743 25799998764
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio |
| >PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0055 Score=65.45 Aligned_cols=66 Identities=24% Similarity=0.170 Sum_probs=53.9
Q ss_pred ccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc-ChhHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 005021 194 IEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLGKLIAFYDDNHI 272 (719)
Q Consensus 194 i~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~-~eG~~~EAln~A~~~~L~nli~ivddN~~ 272 (719)
+....+..|.+++.|.|++.|.+.++ .+..|||+.|||.+ ..| +.++..|...+. |+++||-||+.
T Consensus 64 ~~~~~~~fg~~~a~a~Gi~~a~~~~~----------~~~~Vv~~~GDG~~~dIG--~~~L~~a~~r~~-ni~~ivlDNe~ 130 (299)
T PRK11865 64 VPWIHVAFENAAAVASGIERAVKALG----------KKVNVVAIGGDGGTADIG--FQSLSGAMERGH-NILYLMYDNEA 130 (299)
T ss_pred cccchhhhcchHHHHHHHHHHHHHhc----------CCCeEEEEeCCchHhhcc--HHHHHHHHHcCC-CeEEEEECCcc
Confidence 34567778999999999999988764 25689999999977 444 389999999985 79999999986
|
|
| >cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.03 Score=54.20 Aligned_cols=114 Identities=16% Similarity=0.051 Sum_probs=79.1
Q ss_pred CCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCC--CCCCCChh
Q 005021 456 EERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGED--GPTHQPIE 533 (719)
Q Consensus 456 p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~d--G~THq~~e 533 (719)
.-|++.+- .|+.++.+|.|.++.|. +.++.+..+-+..+.+.+........|++++...... .+.+ ...||.+.
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~--~v~~~~~gpG~~n~~~~l~~a~~~~~P~v~i~g~~~~-~~~~~~~~~~~~~~ 116 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGA--RAMTATSGPGLNLMAEALYLAAGAELPLVIVVAQRPG-PSTGLPKPDQSDLM 116 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCC--cEEEeeCcchHHHHHHHHHHHHhCCCCEEEEEeeCCC-CCCCCCCcCcHHHH
Confidence 35777776 99999999999999985 5444567777778888887776668999998743332 2221 22244344
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEc
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVAN---RKRPSILALS 575 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~irl~ 575 (719)
...+++. -.-++.+.+++|+..+++.|++. .++|++|++.
T Consensus 117 ~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~~ 159 (160)
T cd07034 117 AARYGGH--PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLSD 159 (160)
T ss_pred HHHhCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 4445543 56778899999988888776632 2489999863
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th |
| >PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0039 Score=66.12 Aligned_cols=58 Identities=10% Similarity=0.022 Sum_probs=42.3
Q ss_pred cchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCC
Q 005021 201 LGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHIS 273 (719)
Q Consensus 201 lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~s 273 (719)
.|.+++.|+|+.+|. .+..|||++|||++. .+-...+..|.+++++=+++|+||+.|+
T Consensus 62 mG~alp~AiGaklA~--------------pd~~VVai~GDG~~~-~iG~~eL~tA~r~nl~i~~IV~NN~~Yg 119 (280)
T PRK11869 62 HGRAIPAATAVKATN--------------PELTVIAEGGDGDMY-AEGGNHLIHAIRRNPDITVLVHNNQVYG 119 (280)
T ss_pred cccHHHHHHHHHHHC--------------CCCcEEEEECchHHh-hCcHHHHHHHHHhCcCcEEEEEECHHHh
Confidence 789999999998873 256899999999954 2224567889999986444455555444
|
|
| >PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.062 Score=67.00 Aligned_cols=204 Identities=12% Similarity=0.001 Sum_probs=122.7
Q ss_pred CccccccccchHHHHHHHHHhcCC-------CCccEEEehhhhHHhHHHHHHHHhhh----cCCEEEEEecCCCccCCCC
Q 005021 458 RNVRFGVREHGMGAICNGIALHSP-------GLIPYCATFFVFTDYMRAAIRISALC----EAGVIYVMTHDSIGLGEDG 526 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~-------~~~Pv~~~y~~F~~ra~dqir~~a~~----~~pV~~v~~~~g~g~g~dG 526 (719)
-+|+.|+.|.-+..++.|-+..|. |.+-++++=..=++++-|.++..++. +-.|+++...|-...+.
T Consensus 75 i~~e~~~NEkvA~e~a~Gaq~~~~~~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg~~SS-- 152 (1159)
T PRK13030 75 IRFLPGINEELAATAVLGTQQVEADPERTVDGVFAMWYGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGCVSS-- 152 (1159)
T ss_pred eEEeecCCHHHHHHHHHHhccccccCCccccceEEEEecCcCCcccchhHHHHHHhhcCCCCCcEEEEEecCCCCccC--
Confidence 688999999999999999995541 02335555555678999998866553 34566665444221110
Q ss_pred CCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEc------CCCCC--------CCCCCCccc
Q 005021 527 PTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALS------RQKLP--------HLAGTSIDG 589 (719)
Q Consensus 527 ~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~------r~~~~--------~~~~~~~~~ 589 (719)
.+-|..+..+.+.. |-|+.|+|.+|+..+.+.+++ ..+-||.+|.. ++.+. ..+. . ..
T Consensus 153 q~eqdSr~~~~~a~---iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~-~-f~ 227 (1159)
T PRK13030 153 SMPHQSDFALIAWH---MPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPE-D-FT 227 (1159)
T ss_pred cCHHHHHHHHHHcC---CceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcc-c-cC
Confidence 11122333344444 559999999999999987763 35679999852 11110 0010 0 00
Q ss_pred cccc----cEEE--------------------ec-CC-----C-CCCCCEEEEEeCHhHHHHHHHHHHHHhCCC-----c
Q 005021 590 VEKG----AYII--------------------SD-NS-----S-GNKPDVILIGTGSELEIAAKAAEELRKGGK-----A 633 (719)
Q Consensus 590 ~~~G----~~~i--------------------~~-~~-----~-~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi-----~ 633 (719)
.+.| .|.. .+ .. . +++.++-||++|.....+.+|.+.|...+. .
T Consensus 228 ~~~~~~~~r~~~~p~~~~~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lg 307 (1159)
T PRK13030 228 PPAGGLHNRWPDLPSLAIEARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAG 307 (1159)
T ss_pred CCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccC
Confidence 0000 0000 00 00 0 013679999999999999999888754332 3
Q ss_pred EEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc
Q 005021 634 VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST 672 (719)
Q Consensus 634 v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~ 672 (719)
++|+-+-..-||+.+.+. ..+. +...|+||||...
T Consensus 308 irilKvgm~~PL~~~~i~---~F~~-g~d~VlVVEE~~p 342 (1159)
T PRK13030 308 IRIYKVGLSWPLEPTRLR---EFAD-GLEEILVIEEKRP 342 (1159)
T ss_pred ccEEEeCCccCCCHHHHH---HHHh-cCCEEEEEeCCch
Confidence 566666676699988653 2222 2344799999865
|
|
| >PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.042 Score=53.99 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=77.7
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE-e-hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA-T-FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~-~-y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
-|++.+ -.|++++.+|.|.++.+. +|.++ + ...=+.-+...|.+....+.||+++....+...-..|..|+....
T Consensus 40 i~~i~~-~~E~~A~~~A~g~ar~~g--~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~ 116 (172)
T PF02776_consen 40 IRFIPV-RHEQGAAFMADGYARATG--RPGVVIVTSGPGATNALTGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQ 116 (172)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHHS--SEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHH
T ss_pred eeeecc-cCcchhHHHHHHHHHhhc--cceEEEeecccchHHHHHHHhhcccceeeEEEEecccchhhhcccccccchhh
Confidence 466664 899999999999997653 66554 3 323233455566666667999999885554443335777877888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~~~P~~irl~r~ 577 (719)
..+++.+-.. .+.+.+++++...++.|+ ....+|++|-+|+.
T Consensus 117 ~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~d 162 (172)
T PF02776_consen 117 QSLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQD 162 (172)
T ss_dssp HHHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHH
T ss_pred cchhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChh
Confidence 8899977643 455556666555555444 34689999999874
|
It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B .... |
| >TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.043 Score=53.31 Aligned_cols=108 Identities=17% Similarity=0.092 Sum_probs=65.2
Q ss_pred ccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHh-hhcCCEEEEEecCCCccCCCCCCC--CChhhhhHH-
Q 005021 463 GVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISA-LCEAGVIYVMTHDSIGLGEDGPTH--QPIEHLASF- 538 (719)
Q Consensus 463 GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a-~~~~pV~~v~~~~g~g~g~dG~TH--q~~edia~l- 538 (719)
.-+|...+++|+|.++.|+ +|.+++-.+-+..+...+.... ..+.||+++.+.-|- .|++-+.| ++......|
T Consensus 40 ~~~ee~aa~~aAg~~~~~~--~~~v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~g~rg~-~~~~~~~q~~~g~~~~~~l~ 116 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGK--KPAILMQSSGLGNSINALASLNKTYGIPLPILASWRGV-YKEKIPAQIPMGRATPKLLD 116 (157)
T ss_pred cCChHHHHHHHHHHHHhcC--CcEEEEeCCcHHHHHHHHHHHHHcCCCCEEEEEeccCC-CCCCCccccchhhhhHHHHH
Confidence 5789999999999999885 7877654444556666666666 679999999854333 23331112 222222222
Q ss_pred -cCCCCeEEEeeCCHHHH---HHHHHHHHHcCCCcEEEEEcCC
Q 005021 539 -RAMPNILMLRPADGNET---AGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 539 -r~iPnl~V~~P~d~~e~---~~~l~~a~~~~~~P~~irl~r~ 577 (719)
..+|. ....+++|+ ..+++.|.. .++|++|.+++.
T Consensus 117 ~~~i~~---~~i~~~e~~~~i~~A~~~a~~-~~gPv~il~~~~ 155 (157)
T TIGR03845 117 TLGIPY---TIPREPEEAKLIEKAISDAYE-NSRPVAALLDPK 155 (157)
T ss_pred HcCCCe---EEeCCHHHHHHHHHHHHHHHh-CCCCEEEEEeCC
Confidence 23453 444455555 334444444 359999998764
|
This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.14 Score=63.71 Aligned_cols=199 Identities=12% Similarity=0.035 Sum_probs=124.0
Q ss_pred CccccccccchHHHHH---------HHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhh----cCCEEEEEecCCCccCC
Q 005021 458 RNVRFGVREHGMGAIC---------NGIALHSPGLIPYCATFFVFTDYMRAAIRISALC----EAGVIYVMTHDSIGLGE 524 (719)
Q Consensus 458 R~~d~GIaE~~~vg~A---------aGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~----~~pV~~v~~~~g~g~g~ 524 (719)
=+|..|+.|.-++.++ .|-+..| .+-++++=..=++++-|.++..++. +-.|+++...|-...+.
T Consensus 83 i~fe~~~NEkvAae~~~GsQ~~~~~~~a~~~G--v~~l~y~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDDpg~~SS 160 (1165)
T PRK09193 83 IVFQPGLNEDLAATAVWGSQQVNLFPGAKYDG--VFGMWYGKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDDHAAKSS 160 (1165)
T ss_pred eEEeeccCHHHHHHHHhhhcccccccceeecc--ceEEEecCcCCccccHhHHHHHHhhcCCCCCcEEEEEecCCCCccc
Confidence 7888999999999999 5557778 4777777667788999998865443 34566665444321111
Q ss_pred CCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC------CCCC--------CCCCCCc
Q 005021 525 DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSR------QKLP--------HLAGTSI 587 (719)
Q Consensus 525 dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r------~~~~--------~~~~~~~ 587 (719)
.+-|..+-.+.+.. |-|+.|+|.+|+..+.+.+++ ..+-||.+|... +.+. ..+. .
T Consensus 161 --q~eqdSr~~~~~a~---iPvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~--~ 233 (1165)
T PRK09193 161 --TLPHQSEHAFKAAG---MPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPE--D 233 (1165)
T ss_pred --cchhhhHHHHHHcC---CceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcc--c
Confidence 11122333344544 459999999999999987763 356799998521 1110 0110 0
Q ss_pred cccccc----cEE--------------------------Eec-CCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCc---
Q 005021 588 DGVEKG----AYI--------------------------ISD-NSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA--- 633 (719)
Q Consensus 588 ~~~~~G----~~~--------------------------i~~-~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~--- 633 (719)
...+.+ .|. +-+ .-..++.++-||++|.....+.+|.+.| |++
T Consensus 234 f~~~~~g~~~r~~~~p~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~l---g~~~~~ 310 (1165)
T PRK09193 234 FEMPPGGLNIRWPDPPLEQEARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDL---GLDEET 310 (1165)
T ss_pred ccCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHc---CCChhh
Confidence 011111 010 000 0000136799999999988888876655 444
Q ss_pred -----EEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc
Q 005021 634 -----VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST 672 (719)
Q Consensus 634 -----v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~ 672 (719)
++|+-+-...||+.+.+. ... .+...|+||||...
T Consensus 311 ~~~~gi~ilKvgm~~PL~~~~i~---~Fa-~g~~~vlVVEE~~p 350 (1165)
T PRK09193 311 AARLGIRLYKVGMVWPLEPQGVR---AFA-EGLDEILVVEEKRQ 350 (1165)
T ss_pred hcccCCCEEEeCCCCCCCHHHHH---HHH-hcCCEEEEEecCch
Confidence 889998888999988764 222 22344799999754
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.021 Score=74.61 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=62.0
Q ss_pred cCCCcch--hHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhh--cCCCcEEEEEeCCCC
Q 005021 197 TTGPLGQ--GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGH--LGLGKLIAFYDDNHI 272 (719)
Q Consensus 197 ~tG~lG~--gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~--~~L~nli~ivddN~~ 272 (719)
.-|.+|. +++.|+|.++|. ++.|+|++|||+++- ....|..|.. ++++=++||+||+++
T Consensus 757 ~~G~mG~~G~lpaAIGaala~---------------~r~Vv~i~GDGsF~m--~~~EL~Ta~r~~~~lpi~iVV~NN~gg 819 (1655)
T PLN02980 757 NRGASGIDGLLSTAIGFAVGC---------------NKRVLCVVGDISFLH--DTNGLSILSQRIARKPMTILVINNHGG 819 (1655)
T ss_pred cCCccchhhhHHHHHHHhhcC---------------CCCEEEEEehHHHHh--hhhHHHHhhcccCCCCEEEEEEeCCCc
Confidence 3478888 599999999873 246999999999964 4466777766 488756777777776
Q ss_pred Ccccch-----------hh-h---cchhHHHHHhccCceEEEE
Q 005021 273 SIDGDT-----------EI-A---FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 273 sis~~~-----------~~-~---~~~~~~~~~~a~G~~~~~v 300 (719)
.|-... +. . ...+..+..++||++..+|
T Consensus 820 gi~~~l~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV 862 (1655)
T PLN02980 820 AIFSLLPIAKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHV 862 (1655)
T ss_pred HhhhcCccCCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeec
Confidence 653210 01 1 1346888889999999888
|
|
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.11 Score=57.33 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=78.4
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEEEehhhhHHhHHHHHHHH---hhhcCCEEEEEecCCCccC-CCCCCC--
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYCATFFVFTDYMRAAIRIS---ALCEAGVIYVMTHDSIGLG-EDGPTH-- 529 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~~y~~F~~ra~dqir~~---a~~~~pV~~v~~~~g~g~g-~dG~TH-- 529 (719)
.|++-+ -.|..+||+|+|+.+. |+ +|++++-.+=+..+.+.+... -.-++|+++++++-|- .| .|=|.|
T Consensus 27 ~~~i~~-~~E~~av~iaaG~~latG~--~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~-~g~~depqh~~ 102 (361)
T TIGR03297 27 LRHVIA-ANEGAAVGLAAGAYLATGK--RAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGE-PGVHDEPQHVK 102 (361)
T ss_pred ceEEec-CCchHHHHHHHHHHHhcCC--ccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCC-CCCCCCchhhH
Confidence 355554 6799999999999999 96 999998655566666665432 3358999999866444 45 566888
Q ss_pred CChhhhhHHc--CCCCeEEEeeCCHHHHHHHHH----HHHHcCCCcEEEEEcCCCC
Q 005021 530 QPIEHLASFR--AMPNILMLRPADGNETAGAYK----VAVANRKRPSILALSRQKL 579 (719)
Q Consensus 530 q~~edia~lr--~iPnl~V~~P~d~~e~~~~l~----~a~~~~~~P~~irl~r~~~ 579 (719)
|+.--..+|. .||-.. .|.+.+|....+. .+.+ .+.|+.|.+.++.+
T Consensus 103 ~G~~t~~lL~~~~i~~~~--~~~~~~~~~~~~~~a~~~~~~-~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 103 QGRITLSLLDALEIPWEV--LSTDNDEALAQIERALAHALA-TSRPYALVVRKGTF 155 (361)
T ss_pred HhHHHHHHHHHcCCCEEE--CCCChHHHHHHHHHHHHHHHH-HCCCEEEEEccccc
Confidence 5654455665 444333 2455555555444 4443 58999999988655
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.22 Score=48.65 Aligned_cols=114 Identities=17% Similarity=0.070 Sum_probs=74.0
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|++.+ -.|++++.+|-|.|+... +|-+ .+...-+..+...|.+.-..+.||+++...... ...+-.+||.+.+.
T Consensus 37 ~~v~~-rhE~~A~~mAdgyar~sg--~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~-~~~~~~~~q~~d~~ 112 (162)
T cd07037 37 RLHVR-VDERSAAFFALGLAKASG--RPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTADRPP-ELRGTGANQTIDQV 112 (162)
T ss_pred eEEec-cChHHHHHHHHHHHHhhC--CCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEECCCCH-HhcCCCCCcccchh
Confidence 55554 789999999999998653 5655 356666666666777777889999999732222 22223357888888
Q ss_pred hHHcCCCCe--EEEeeCC-------HHHHHHHHHHHHHcCCCcEEEEEc
Q 005021 536 ASFRAMPNI--LMLRPAD-------GNETAGAYKVAVANRKRPSILALS 575 (719)
Q Consensus 536 a~lr~iPnl--~V~~P~d-------~~e~~~~l~~a~~~~~~P~~irl~ 575 (719)
.+++.+=.. +|-.|.+ +..+..+++.|.....||++|-+|
T Consensus 113 ~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 113 GLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred hhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 888765542 3334444 344555555555435689999664
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim |
| >PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.36 Score=60.32 Aligned_cols=197 Identities=15% Similarity=0.062 Sum_probs=118.9
Q ss_pred CccccccccchHHH---------HHHHHHhcCCCCccEEEehhhhHHhHHHHHHHH--hhh--cCCEEEEEecCCCccCC
Q 005021 458 RNVRFGVREHGMGA---------ICNGIALHSPGLIPYCATFFVFTDYMRAAIRIS--ALC--EAGVIYVMTHDSIGLGE 524 (719)
Q Consensus 458 R~~d~GIaE~~~vg---------~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~--a~~--~~pV~~v~~~~g~g~g~ 524 (719)
=+|..|+.|.-+++ ++.|-+..| .+-++++=..=++++-|.++.. ++. +-.|+++...|-....
T Consensus 86 i~fe~~~NEklAatav~Gsq~~e~~~~a~~dG--v~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~S- 162 (1186)
T PRK13029 86 VVFQPGVNEELAATAVWGSQQLELDPGAKRDG--VFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKS- 162 (1186)
T ss_pred eEEeecCCHHHHHHHhhhhhhcccccceeecc--ceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCcc-
Confidence 57788999999944 445555566 4666666666678999998754 454 3446666544422111
Q ss_pred CCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcC------CCCC--------CCCCCCc
Q 005021 525 DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSR------QKLP--------HLAGTSI 587 (719)
Q Consensus 525 dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r------~~~~--------~~~~~~~ 587 (719)
-.+-|..+....+..| -|+.|+|.+|+..+...+++ ..+-||.+|... +.+. ..+. .
T Consensus 163 -Sq~eqdSr~~~~~a~i---Pvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~--~ 236 (1186)
T PRK13029 163 -SSVAHQSDHTFIAWGI---PVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPD--D 236 (1186)
T ss_pred -ccCHHHHHHHHHHcCC---ceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcc--c
Confidence 1111223333444454 59999999999999887763 346799998632 1110 0010 0
Q ss_pred ccccccc----E-----------------------------EEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCc-
Q 005021 588 DGVEKGA----Y-----------------------------IISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA- 633 (719)
Q Consensus 588 ~~~~~G~----~-----------------------------~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~- 633 (719)
...+.|+ | ++... ++..++-||++|.....+.+|.+.| |++
T Consensus 237 f~~~~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~--~~~~~~GIItsG~~y~~v~eAl~~l---gl~~ 311 (1186)
T PRK13029 237 FVLPPGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVID--GPNPRLGIIAAGKAYLDVRQALRDL---GLDD 311 (1186)
T ss_pred ccCCccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEecc--CCCCCEEEEecCccHHHHHHHHHHc---CCCh
Confidence 0001100 0 01100 0136799999999988888886655 443
Q ss_pred -------EEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc
Q 005021 634 -------VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST 672 (719)
Q Consensus 634 -------v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~ 672 (719)
++|+-+-...||+.+.+. ... .+...|+||||...
T Consensus 312 ~~~~~~gi~ilKvgm~~PL~~~~i~---~Fa-~g~d~vlVVEE~~p 353 (1186)
T PRK13029 312 ATCAALGIRLLKVGCVWPLDPQSVR---EFA-QGLEEVLVVEEKRA 353 (1186)
T ss_pred hhccccCCCEEEeCCCCCCCHHHHH---HHH-hcCCEEEEEecCch
Confidence 889999999999988764 222 23345799999754
|
|
| >cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways | Back alignment and domain information |
|---|
Probab=93.87 E-value=2.6 Score=43.74 Aligned_cols=118 Identities=12% Similarity=-0.001 Sum_probs=66.1
Q ss_pred CCCCccccccccchHHHHHHHHHh----c-----CCCCccEEEeh--hhhHHhHHHHHHHHhhhcCCEEEEEecCCCccC
Q 005021 455 PEERNVRFGVREHGMGAICNGIAL----H-----SPGLIPYCATF--FVFTDYMRAAIRISALCEAGVIYVMTHDSIGLG 523 (719)
Q Consensus 455 ~p~R~~d~GIaE~~~vg~AaGlA~----~-----G~~~~Pv~~~y--~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g 523 (719)
+|.++++..+.-...+|.+...|. . . +=+|++++- ..|++..+-.+-.....++||++++-+++. +|
T Consensus 51 ~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~-p~~~Vv~i~GDG~~~~~g~~~l~ta~~~~l~i~ivVlNN~~-yg 128 (237)
T cd02018 51 WAVPWVNSLFEDANAVASGLKRGLKARFPKDRELD-KKKDVVVIGGDGATYDIGFGALSHSLFRGEDITVIVLDNEV-YS 128 (237)
T ss_pred cCCCeeeccccCHHHHHHHHHHHHHhhcccccccC-CCCcEEEEeCchHHHhccHHHHHHHHHcCCCeEEEEECCcc-cc
Confidence 455666665444455554333332 2 1 126777664 444444444444445588998888865543 22
Q ss_pred CCCCCCC---------------------ChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 524 EDGPTHQ---------------------PIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 524 ~dG~THq---------------------~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
.-+..++ ....++---.++.+....+.+..|++.+|+.++.+.++|++|-.
T Consensus 129 ~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v 200 (237)
T cd02018 129 NTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHA 200 (237)
T ss_pred CCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2221111 11222222344555555699999999999999952589998865
|
Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors. |
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.37 Score=56.16 Aligned_cols=114 Identities=12% Similarity=0.101 Sum_probs=77.8
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ ..|++++.+|-|.|+.-. +|-+ .++.+-+.-+...|.++...+.||+++....... .+. ..||.+.+
T Consensus 38 ~~i~~-~hE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~n~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~ 112 (539)
T TIGR02418 38 ELIVV-RHEQNAAFMAQAVGRITG--KPGVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRADLLK--LTHQSMDN 112 (539)
T ss_pred CEEEe-CcHHHHHHHHHHHHHHhC--CceEEEECCCCCHhHHHHHHHHHhhcCCCEEEEeCCCccccccc--Ccccccch
Confidence 66666 699999999999997542 4433 4566666666667777777899999987322221 232 34898888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~~~P~~irl~r~ 577 (719)
.++++.+-.. .....++.++...+..|+ ....||+||-+|+.
T Consensus 113 ~~~~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 113 VALFRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred hhhhhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 9999987553 334456667666555554 32468999999875
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.37 Score=56.04 Aligned_cols=117 Identities=9% Similarity=-0.015 Sum_probs=75.1
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE-e-hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA-T-FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~-~-y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
=|++.+ -.|++++.+|-|.|+... +|-++ + -..-+..+...|..+...+.||+++........-..++.+|.+..
T Consensus 49 i~~i~~-~hE~~A~~~Adgyar~tg--~~~v~~vt~gpG~~N~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~ 125 (530)
T PRK07092 49 FRYVLG-LQEAVVVGMADGYAQATG--NAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAGQQARSILPFEPFLAAVQA 125 (530)
T ss_pred CCEEEE-ccHHHHHHHHHHHHHHhC--CceEEEeccCchHHHHHHHHHHHhhcCCCEEEEecCCcccccCccchhcccCH
Confidence 366644 899999999999999543 56554 3 233334566667667778999998863222222123333454566
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
..+++.+-...... .++.++..+++.|++ ...||+||-+|+.
T Consensus 126 ~~l~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d 171 (530)
T PRK07092 126 AELPKPYVKWSIEP-ARAEDVPAAIARAYHIAMQPPRGPVFVSIPYD 171 (530)
T ss_pred HHhhcccccceeec-CCHHHHHHHHHHHHHHHhcCCCCcEEEEccHH
Confidence 78888876654433 566676666665553 2358999999864
|
|
| >KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.12 Score=57.62 Aligned_cols=62 Identities=24% Similarity=0.224 Sum_probs=42.6
Q ss_pred cccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 005021 195 EVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272 (719)
Q Consensus 195 ~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~ 272 (719)
..+-|.+|-|++.|++.|++. .+..|||+-||+++- .+.=-+..+.+++|+=+++|+|||++
T Consensus 426 aGtfgTMGVG~Gfalaaa~~~--------------P~~~V~~veGDsaFG--fSaME~ET~vR~~Lpvv~vV~NN~Gi 487 (571)
T KOG1185|consen 426 AGTFGTMGVGLGFALAAALAA--------------PDRKVVCVEGDSAFG--FSAMELETFVRYKLPVVIVVGNNNGI 487 (571)
T ss_pred CccccccccchhHHHHHHhhC--------------CCCeEEEEecCcccC--cchhhHHHHHHhcCCeEEEEecCCcc
Confidence 345667787877777666653 378899999999984 32222345678999866666667764
|
|
| >cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | Back alignment and domain information |
|---|
Probab=93.29 E-value=1 Score=44.01 Aligned_cols=114 Identities=11% Similarity=0.024 Sum_probs=76.6
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ -.|++++-+|.|.|+... +|-++ +...=+..+...+.+....+.||+++....... .+. ..+|.+.+
T Consensus 40 ~~v~~-rhE~~A~~mA~gyar~tg--~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g~~~~~~~~~--~~~q~~d~ 114 (164)
T cd07039 40 EFIQV-RHEEAAAFAASAEAKLTG--KLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELGT--DYFQEVDL 114 (164)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhC--CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCcccccCC--CCCcccCH
Confidence 44444 789999999999998743 55443 455555556666666677899999997322211 122 24787888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVAN---RKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~irl~r~ 577 (719)
..+++.+=.. ...+.++.++..+++.|++. ..+|++|-+|+.
T Consensus 115 ~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 115 LALFKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred HHHHHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 8888887653 35556777777666665532 469999988864
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ |
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=1 Score=52.53 Aligned_cols=116 Identities=10% Similarity=0.043 Sum_probs=78.4
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
=|++.+ .-|++++.+|-|.|+... +|-++ ++.+=+..+...|.++...+.||+++........ .+-.++|.+..
T Consensus 43 i~~i~~-rhE~~A~~~AdGyar~tg--~~gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~g~~~~~~-~~~~~~q~~d~ 118 (542)
T PRK05858 43 IRLIDV-RHEQTAAFAAEAWAKLTR--VPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALR-WGMGSLQEIDH 118 (542)
T ss_pred CCEEee-ccHHHHHHHHHHHHHhcC--CCeEEEEcCCchHHHHHHHHHHHHhcCCCEEEEeCCCCccc-CCCCCCcccch
Confidence 466666 899999999999999843 56553 4444444556667777778999998863222221 12234777888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
.++++.+-- ......++.++...+..|++ ...|||+|-+|+.
T Consensus 119 ~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 164 (542)
T PRK05858 119 VPFVAPVTK-FAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMD 164 (542)
T ss_pred hhhhhhhhc-eEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChh
Confidence 888887765 34455667777766665553 2468999999874
|
|
| >cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria | Back alignment and domain information |
|---|
Probab=92.67 E-value=3.5 Score=42.75 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=56.7
Q ss_pred ccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCCh-----------------------hhhh-H
Q 005021 484 IPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPI-----------------------EHLA-S 537 (719)
Q Consensus 484 ~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~-----------------------edia-~ 537 (719)
+|++++ -..|.+..+..+...+..++||++++-+++. +|.-|..++.. -|+. +
T Consensus 81 r~VV~i~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~-yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~i 159 (235)
T cd03376 81 ITVVAFAGDGGTADIGFQALSGAAERGHDILYICYDNEA-YMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLI 159 (235)
T ss_pred CeEEEEEcCchHHhhHHHHHHHHHHcCCCeEEEEECCcc-cccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHHH
Confidence 788765 4556556666677778889999988865543 34211111110 1222 2
Q ss_pred Hc--CCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 538 FR--AMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 538 lr--~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
.+ .++.+..+...+.+|+..+++.+++ .++|++|-+
T Consensus 160 A~a~G~~~~~~~~v~~~~el~~al~~a~~-~~gP~lIev 197 (235)
T cd03376 160 MAAHNIPYVATASVAYPEDLYKKVKKALS-IEGPAYIHI 197 (235)
T ss_pred HHHcCCcEEEEEcCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 22 2334445678999999999999996 689998865
|
PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity. |
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.75 Score=53.68 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=77.2
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ ..|++++.+|-|.|+... +|-++ +..+=+..+...|.++-..+.||+++....... .+. + .||.+..
T Consensus 40 ~~i~~-~hE~~A~~~A~gyar~tg--~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~g~~~~~~~~~-~-~~q~~d~ 114 (547)
T PRK08322 40 KLILT-RHEQGAAFMAATYGRLTG--KAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRSKQ-G-SFQIVDV 114 (547)
T ss_pred cEEEe-ccHHHHHHHHHHHHHhhC--CCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEeccccccccCC-C-ccccccH
Confidence 55555 899999999999998743 55443 455555566666777777899999887322221 122 2 3777777
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
.++++.+-. ..+...++.++..+++.|++. ..||++|-+|+.
T Consensus 115 ~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 115 VAMMAPLTK-WTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred HHHhhhhee-EEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 788887654 345566777776666655532 468999999875
|
|
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.87 Score=52.73 Aligned_cols=115 Identities=12% Similarity=0.006 Sum_probs=72.3
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|++.+ --|++++.+|.|.|+... +|-|+ ++..=+..+..-|.++-..+.||+++....... ...-..||.....
T Consensus 41 ~~i~~-rhE~~A~~mAdgyar~tg--~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~G~~~~~-~~~~~~~q~~d~~ 116 (514)
T PRK07586 41 RCVLG-LFEGVATGAADGYARMAG--KPAATLLHLGPGLANGLANLHNARRARTPIVNIVGDHATY-HRKYDAPLTSDIE 116 (514)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHHC--CCEEEEecccHHHHHHHHHHHHHHhcCCCEEEEecCCchh-ccCCCcccccchh
Confidence 66666 889999999999998642 56543 455544555555666667899999987322111 1111236666666
Q ss_pred hHHcCCCCeEEEeeCCHHHHHHHHHHH----HHcCCCcEEEEEcCC
Q 005021 536 ASFRAMPNILMLRPADGNETAGAYKVA----VANRKRPSILALSRQ 577 (719)
Q Consensus 536 a~lr~iPnl~V~~P~d~~e~~~~l~~a----~~~~~~P~~irl~r~ 577 (719)
.+++.+=- -.+...++.++..+++.| .....|||||-+|+.
T Consensus 117 ~~~~~vtk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~D 161 (514)
T PRK07586 117 ALARPVSG-WVRRSESAADVAADAAAAVAAARGAPGQVATLILPAD 161 (514)
T ss_pred hhhccccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 77776532 234455566665555544 432479999999985
|
|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=92.03 E-value=1.1 Score=52.91 Aligned_cols=115 Identities=14% Similarity=0.115 Sum_probs=74.8
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ --|++++.+|-|.|+... +|-+ .++..=+..+...|.++...+.||+++....... .+.+ .+|.+.
T Consensus 60 i~~i~~-rhE~~A~~~AdgYar~tg--~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d 134 (587)
T PRK06965 60 IQHVLV-RHEQAAVHAADGYARATG--KVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQD--AFQECD 134 (587)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHhC--CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCCC--Cccccc
Confidence 467766 899999999999998642 4433 3455555566666777777899999997332222 2322 367677
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHH----HHHHHHHcCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAG----AYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~----~l~~a~~~~~~P~~irl~r~ 577 (719)
..++++.+=-.. +...++.++.. +++.|+....||+||-+|+.
T Consensus 135 ~~~l~~~itk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 135 TVGITRPIVKHN-FLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred HHHHhcCCccee-EEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 777887765432 33345555444 44444433469999999985
|
|
| >TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family | Back alignment and domain information |
|---|
Probab=91.60 E-value=4.3 Score=43.42 Aligned_cols=147 Identities=12% Similarity=0.019 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccccc---cchHHHHHHHHHhcCCCCccEEE
Q 005021 412 RNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVR---EHGMGAICNGIALHSPGLIPYCA 488 (719)
Q Consensus 412 r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIa---E~~~vg~AaGlA~~G~~~~Pv~~ 488 (719)
..++.++|.++.-..++. ++..|++-+. +.| +++++.-- =...+.+|.|+++... =+||++
T Consensus 13 ~~~~~~a~~~l~~~p~d~-iivsdiGc~~-------------~~~-~~l~~~~~~t~mG~alPaAiGaklA~P-d~~VVa 76 (287)
T TIGR02177 13 LSALQRALAELNLDPEQV-VVVSGIGCSA-------------KTP-HYVNVNGFHGLHGRALPVATGIKLANP-HLKVIV 76 (287)
T ss_pred HHHHHHHHHHhcCCCCCE-EEEECCCccc-------------ccC-CeEecCCcccccccHHHHHHHHHHHCC-CCcEEE
Confidence 456667777665333344 4445765332 123 44443221 0335557777766542 367776
Q ss_pred e--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCC----CCC----------C-------ChhhhhHHcCCCCeE
Q 005021 489 T--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDG----PTH----------Q-------PIEHLASFRAMPNIL 545 (719)
Q Consensus 489 ~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG----~TH----------q-------~~edia~lr~iPnl~ 545 (719)
+ -..|......-+-.++..++||++++-.++. +|.-| ++- + ...-+++.....-.-
T Consensus 77 i~GDG~f~~mg~~eL~tA~r~nl~I~vIVlNN~~-yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va 155 (287)
T TIGR02177 77 VGGDGDLYGIGGNHFVAAGRRNVDITVIVHDNQV-YGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVA 155 (287)
T ss_pred EeCchHHHhccHHHHHHHHHhCcCeEEEEEECHH-HHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEE
Confidence 5 3445433333444456789998888755432 22211 110 0 111222333333222
Q ss_pred EEeeCCHHHHHHHHHHHHHcCCCcEEEEEcC
Q 005021 546 MLRPADGNETAGAYKVAVANRKRPSILALSR 576 (719)
Q Consensus 546 V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r 576 (719)
.....+.+|+..+++.|++ +++|++|-.-.
T Consensus 156 ~~~~~~~~eL~~ai~~Al~-~~GpslIeV~~ 185 (287)
T TIGR02177 156 RGFSGDVAHLKEIIKEAIN-HKGYALVDILQ 185 (287)
T ss_pred EEecCCHHHHHHHHHHHHh-CCCCEEEEEeC
Confidence 3336899999999999996 79999887643
|
Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes. |
| >cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
Probab=91.42 E-value=2.8 Score=40.98 Aligned_cols=117 Identities=14% Similarity=0.001 Sum_probs=67.0
Q ss_pred CCCCCcccccc--ccchHHHHHHHHHhcCCCCccEEEeh--hhhHHhHHHHHHHHhhhcCCEEEEEecCC-CccCCC---
Q 005021 454 TPEERNVRFGV--REHGMGAICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISALCEAGVIYVMTHDS-IGLGED--- 525 (719)
Q Consensus 454 ~~p~R~~d~GI--aE~~~vg~AaGlA~~G~~~~Pv~~~y--~~F~~ra~dqir~~a~~~~pV~~v~~~~g-~g~g~d--- 525 (719)
..|.+++..|. +=...+++|.|.++... =+|++++. ..|... ...+...+..++|+++++..++ ++....
T Consensus 36 ~~p~~~~~~~~~g~mG~~lp~AiGa~la~~-~~~vv~i~GDG~f~~~-~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~ 113 (172)
T cd02004 36 RKPRHRLDAGTFGTLGVGLGYAIAAALARP-DKRVVLVEGDGAFGFS-GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQ 113 (172)
T ss_pred cCCCcEecCCCCCcccchHHHHHHHHHhCC-CCeEEEEEcchhhcCC-HHHHHHHHHcCCCEEEEEEECcccccchhhhh
Confidence 45788887653 22334556767776652 35666653 444432 2335556678999888776554 332110
Q ss_pred ----CCCCC----Chhhhh-HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 526 ----GPTHQ----PIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 526 ----G~THq----~~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
+..+. ...|.. +.+++ |+..+.-.+.+|+..+++.+.. .++|++|-.
T Consensus 114 ~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev 169 (172)
T cd02004 114 LSYGLGLPVTTLLPDTRYDLVAEAF-GGKGELVTTPEELKPALKRALA-SGKPALINV 169 (172)
T ss_pred hhccCCCceeccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHH-cCCCEEEEE
Confidence 00000 112222 22222 4556666789999999999986 589998854
|
Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. |
| >cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation | Back alignment and domain information |
|---|
Probab=91.11 E-value=6.3 Score=38.87 Aligned_cols=118 Identities=10% Similarity=-0.031 Sum_probs=65.8
Q ss_pred CCCCCcccccc--ccchHHHHHHHHHhcCCCCccEEEeh--hhhHHhHHHHHHHHhhhcCCEEEEEecC-CCccCC----
Q 005021 454 TPEERNVRFGV--REHGMGAICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISALCEAGVIYVMTHD-SIGLGE---- 524 (719)
Q Consensus 454 ~~p~R~~d~GI--aE~~~vg~AaGlA~~G~~~~Pv~~~y--~~F~~ra~dqir~~a~~~~pV~~v~~~~-g~g~g~---- 524 (719)
..|.||+..+- +=...+..|.|.++.-. =+|++++. ..|..-. .-+......++|+++++.++ +++.-.
T Consensus 36 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~-~~~vv~i~GDG~f~m~~-~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~ 113 (177)
T cd02010 36 YAPNTCLISNGLATMGVALPGAIGAKLVYP-DRKVVAVSGDGGFMMNS-QELETAVRLKIPLVVLIWNDNGYGLIKWKQE 113 (177)
T ss_pred CCCCCEEeCCCChhhhhHHHHHHHHHHhCC-CCcEEEEEcchHHHhHH-HHHHHHHHHCCCeEEEEEECCcchHHHHHHH
Confidence 45788886532 11223335666554321 26777653 4454222 22444566789988876444 443210
Q ss_pred --CCC-CCC--Chhhhh-HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 005021 525 --DGP-THQ--PIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALS 575 (719)
Q Consensus 525 --dG~-THq--~~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~ 575 (719)
.+. .+. ..-|.+ +-+++ |+.-+.-.+.+|++.+++.++. .++|++|-..
T Consensus 114 ~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev~ 168 (177)
T cd02010 114 KEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALA-ADGVHVIDCP 168 (177)
T ss_pred HhcCCcccCcCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 011 110 011322 33333 5667777899999999999996 6999998754
|
ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. |
| >PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=90.79 E-value=6.9 Score=42.10 Aligned_cols=110 Identities=13% Similarity=0.059 Sum_probs=70.5
Q ss_pred chHHHHHHHHHhc----CCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCC-----------
Q 005021 467 HGMGAICNGIALH----SPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH----------- 529 (719)
Q Consensus 467 ~~~vg~AaGlA~~----G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~TH----------- 529 (719)
.+..++|.|++.. |.+-+.++.. -.+|.+-.++.+-.++..+.||++++-+........|..|
T Consensus 72 G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~t 151 (300)
T PRK11864 72 AATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTT 151 (300)
T ss_pred hChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCcccc
Confidence 4445566666554 1111455533 4556665566677778999999999855443211111111
Q ss_pred ---------CChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCC
Q 005021 530 ---------QPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 530 ---------q~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~ 577 (719)
-.+..++.-..+|-+....|.+..++...++.|++ .+||.+|..-..
T Consensus 152 sp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~-~~Gps~I~~~sp 207 (300)
T PRK11864 152 TPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE-IRGFKFIHLLAP 207 (300)
T ss_pred CCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEEeCC
Confidence 12344555567778889999999999999999996 799999976443
|
|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=90.79 E-value=1.3 Score=52.15 Aligned_cols=116 Identities=11% Similarity=0.052 Sum_probs=78.1
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
=|++.+ -.|++++.+|-|.|+... +|-| .++..=+..+...|.++-..+.||+++........-.. ..||.++.
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~tg--~~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~-~~~q~~d~ 118 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARATG--KTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTLIGE-DAFQETDM 118 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhC--CCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccCC-Ccccccch
Confidence 356655 899999999999997543 5544 34555555666677777778999999973322221112 24787888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
..+++.+--.. +...++.++..+++.|++ ...||+||-+|+.
T Consensus 119 ~~l~~~itk~s-~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 119 VGISRPIVKHS-FMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred hhhhhccceeE-EEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 88888776543 444566766666665553 2369999999985
|
|
| >PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=90.76 E-value=5.2 Score=42.61 Aligned_cols=107 Identities=14% Similarity=0.055 Sum_probs=68.1
Q ss_pred chHHHHHHHHHhcCCCCccEEEeh--hhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCC----CCC----------C
Q 005021 467 HGMGAICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDG----PTH----------Q 530 (719)
Q Consensus 467 ~~~vg~AaGlA~~G~~~~Pv~~~y--~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG----~TH----------q 530 (719)
...+.+|.|+++... =++|+.+- .++.+.....+-.++..++|+++++-..+. +|.-| ++- .
T Consensus 62 G~alp~A~GaklA~P-d~~VV~i~GDG~~f~ig~~eL~tA~rrn~~i~vIV~nN~~-ygmtggQ~s~~t~~g~~t~~t~~ 139 (279)
T PRK11866 62 GRVLPIATGVKWANP-KLTVIGYGGDGDGYGIGLGHLPHAARRNVDITYIVSNNQV-YGLTTGQASPTTPRGVKTKTTPD 139 (279)
T ss_pred ccHHHHHHHHHHHCC-CCcEEEEECChHHHHccHHHHHHHHHHCcCcEEEEEEChh-hhhhcccccCCCCCCceeeccCC
Confidence 556677888777642 36777653 434455555566677889998888855433 33222 110 0
Q ss_pred -------ChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcC
Q 005021 531 -------PIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSR 576 (719)
Q Consensus 531 -------~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r 576 (719)
....++.-..++.+....+.+..|++.+++.|++ +++|++|-.-.
T Consensus 140 g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~-~~Gps~I~v~~ 191 (279)
T PRK11866 140 GNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK-HKGFSFIDVLS 191 (279)
T ss_pred CCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh-CCCCEEEEEeC
Confidence 1223333345555667777999999999999996 79999987633
|
|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.50 E-value=2 Score=50.18 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=77.3
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCC-CCCCCChh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGED-GPTHQPIE 533 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~d-G~THq~~e 533 (719)
|++.+ ..|++++.+|.|+|+... +|-| .++.+=+..+...|.++-..+.||+++....... .+.+ +..||.+.
T Consensus 43 ~~i~~-~hE~~A~~~A~gyar~tg--~~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d 119 (544)
T PRK07064 43 RFVPA-RGEAGAVNMADAHARVSG--GLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPD 119 (544)
T ss_pred cEEee-ccHHHHHHHHHHHHHhcC--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccC
Confidence 55555 889999999999997642 4444 3555555566667777777899999987322221 2332 34577678
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~~~P~~irl~r~ 577 (719)
+..+++.+-.. .+...+++++..+++.|+ ....||+||-+|..
T Consensus 120 ~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (544)
T PRK07064 120 QLTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPID 166 (544)
T ss_pred HHHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHh
Confidence 88888877653 344456666666655554 32479999999874
|
|
| >cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions | Back alignment and domain information |
|---|
Probab=90.39 E-value=8.7 Score=37.77 Aligned_cols=117 Identities=21% Similarity=0.149 Sum_probs=67.8
Q ss_pred CCCCCcccccc-cc-chHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCC-CccC-----
Q 005021 454 TPEERNVRFGV-RE-HGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDS-IGLG----- 523 (719)
Q Consensus 454 ~~p~R~~d~GI-aE-~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g-~g~g----- 523 (719)
..|.+++..+. .= ...++.|.|.++... =++++++ -..|+.-..+ +...+..++|+++++-.++ ++..
T Consensus 39 ~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~-~~~vv~i~GDG~f~~~~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~ 116 (178)
T cd02014 39 NGKQRFILSGLLATMGNGLPGAIAAKLAYP-DRQVIALSGDGGFAMLMGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQE 116 (178)
T ss_pred CCCCcEEcCCCCchhhhHHHHHHHHHHhCC-CCcEEEEEcchHHHhhHHH-HHHHHHhCCCcEEEEEECCchhHHHHHHH
Confidence 45778777543 11 113345556555431 1566654 4566544322 4445677999888876665 3210
Q ss_pred -CCCC-CC--CChhhhh-HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 524 -EDGP-TH--QPIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 524 -~dG~-TH--q~~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
..++ .+ +..-|+. +.++. |+..+...+..|++..++.+++ .++|++|-.
T Consensus 117 ~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~~l~~a~~-~~~p~liev 170 (178)
T cd02014 117 VMGQPEFGVDLPNPDFAKIAEAM-GIKGIRVEDPDELEAALDEALA-ADGPVVIDV 170 (178)
T ss_pred HhcCCceeccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0011 01 1112333 44444 7778888899999999999986 689998865
|
POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. |
| >cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) | Back alignment and domain information |
|---|
Probab=90.31 E-value=4.2 Score=39.34 Aligned_cols=111 Identities=16% Similarity=0.112 Sum_probs=63.2
Q ss_pred CCCCCccccccccchHHH----HHHHHHhcCCCCccEEEeh--hhhHHhHHHHHHHHhhh-cCCEEEEEecCCCccCCCC
Q 005021 454 TPEERNVRFGVREHGMGA----ICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISALC-EAGVIYVMTHDSIGLGEDG 526 (719)
Q Consensus 454 ~~p~R~~d~GIaE~~~vg----~AaGlA~~G~~~~Pv~~~y--~~F~~ra~dqir~~a~~-~~pV~~v~~~~g~g~g~dG 526 (719)
..|.+|+. ...+| .|.|+++.-. +|++++. ..|+.-.- .+...+.. ++|+++++.+++. +|.-+
T Consensus 33 ~~~~~~~~-----~gsmG~~lp~AiGa~~a~~--~~Vv~i~GDG~f~m~~~-el~t~~~~~~~~i~~vV~nN~~-~g~~~ 103 (157)
T cd02001 33 DRDGHFYM-----LGSMGLAGSIGLGLALGLS--RKVIVVDGDGSLLMNPG-VLLTAGEFTPLNLILVVLDNRA-YGSTG 103 (157)
T ss_pred cCCCCEEe-----ecchhhHHHHHHHHHhcCC--CcEEEEECchHHHhccc-HHHHHHHhcCCCEEEEEEeCcc-ccccC
Confidence 45788875 44444 5677766543 6777653 45543221 13333434 5898777744432 22222
Q ss_pred --CCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 527 --PTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 527 --~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
++++..-|.+-+..-=|+.-+...+.+|+..+++.++. .++|++|-.
T Consensus 104 ~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~gp~vi~v 152 (157)
T cd02001 104 GQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLA-TTGPTLLHA 152 (157)
T ss_pred CcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 22322223332222224445566889999999999996 689998865
|
Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors. |
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.11 E-value=1.3 Score=51.78 Aligned_cols=117 Identities=20% Similarity=0.196 Sum_probs=76.9
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCC-CCCCCCh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGED-GPTHQPI 532 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~d-G~THq~~ 532 (719)
=|++.+ ..|++++.+|-|+|+... +|-+ .++.+=+..++..|.++-..+.||+++....... .+.+ +.+|+.+
T Consensus 44 i~~v~~-~hE~~A~~~A~gyar~tg--~~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~ 120 (542)
T PRK08266 44 IRVIHT-RHEQAAGYMAFGYARSTG--RPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMP 120 (542)
T ss_pred CeEEee-ccHHHHHHHHHHHHHHhC--CCeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecc
Confidence 466666 899999999999998643 5544 3566655666677777778899999987322221 2332 2345556
Q ss_pred hhhhHHcCCCCeEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 005021 533 EHLASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQ 577 (719)
Q Consensus 533 edia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~~~P~~irl~r~ 577 (719)
....+++.+-.. .....++.++..+++.|+ ....||++|-+|..
T Consensus 121 d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 121 DQLATLRSFTKW-AERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred cHhhHHhhhcce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 777888876553 334445566555555444 33579999999874
|
|
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.06 E-value=2 Score=49.97 Aligned_cols=116 Identities=18% Similarity=0.200 Sum_probs=78.5
Q ss_pred CccccccccchHHHHHHHHHhcCCCCcc-EEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCC-CCCCCChh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIP-YCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGED-GPTHQPIE 533 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~P-v~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~d-G~THq~~e 533 (719)
|++.+ -.|++++.+|-|.|+... +| +|. +...=+..+...|.++-..+.||+++....... .+.+ +..|+.+.
T Consensus 41 ~~i~~-~hE~~A~~mAdgyar~tg--~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d 117 (535)
T PRK07524 41 RHVTP-RHEQGAGFMADGYARVSG--KPGVCFIITGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPD 117 (535)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhC--CCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCChhhcCCCCcccccccc
Confidence 55655 789999999999997653 55 443 455555566666777777899999887322221 2332 45566567
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
...+++.+=- ..+...++.++...++.|++ ...||++|-+|+.
T Consensus 118 ~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (535)
T PRK07524 118 QRAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLD 164 (535)
T ss_pred HHHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHh
Confidence 7788887653 44566677777777766653 2469999999975
|
|
| >PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria | Back alignment and domain information |
|---|
Probab=89.80 E-value=2.1 Score=42.96 Aligned_cols=110 Identities=16% Similarity=0.120 Sum_probs=58.5
Q ss_pred CCCEEEEEeCHhH-HHHHHHHHHHHhC--CCcEEEEecCChhhHHHHHH-------HhhhhhccCCCceEEEEccccccC
Q 005021 605 KPDVILIGTGSEL-EIAAKAAEELRKG--GKAVRVVSFVSWELFDEQSD-------AYKESVLPAAVSARVSIEAGSTFG 674 (719)
Q Consensus 605 g~dvtIva~G~~v-~~al~Aa~~L~~~--Gi~v~VId~~~l~pld~~~~-------~~~~sv~~~~~~~vvvvE~~~~~G 674 (719)
.+||+|.+.|... .++++|++.|++. +++++|||+..|--|-.... .-..+++...+.+ +.--|..-+
T Consensus 34 ePDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPV--iFafHGYp~ 111 (203)
T PF09363_consen 34 EPDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPV--IFAFHGYPW 111 (203)
T ss_dssp T-SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-E--EEEESSEHH
T ss_pred CCCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCE--EEEcCCCHH
Confidence 5899999999977 6899999999987 99999999998766533211 1113455555553 222221111
Q ss_pred -chhhh-----cCCceEEeeCcCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 005021 675 -WEKIV-----GSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 716 (719)
Q Consensus 675 -~~~~~-----~~~~~~ig~d~f~~~g~~~el~~~~gl~~e~I~~~i~ 716 (719)
+.+.+ ..++..-|..+=|..=++=++.-..++|-=.++..+.
T Consensus 112 ~i~~L~~~R~n~~~~hV~GY~EeGttTTPFDM~vlN~~dRfhLa~dai 159 (203)
T PF09363_consen 112 LIHRLLFGRPNHDRFHVHGYREEGTTTTPFDMRVLNGMDRFHLAKDAI 159 (203)
T ss_dssp HHHHHTTTSTTGGGEEEEEE-S---SS-HHHHHHCTT-SHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCeEEEeeccCCCcCchHHHHHHhCCCHHHHHHHHH
Confidence 11111 1123344543334444456777777777766665543
|
PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A. |
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=89.61 E-value=2.4 Score=49.66 Aligned_cols=115 Identities=12% Similarity=0.048 Sum_probs=77.6
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|++.+ -.|++++.+|-|.|+.-. +|-+ .++..=+..+...|..+-..+.||+++...... .......+|.++..
T Consensus 41 ~~i~~-~hE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~g~~~~-~~~~~~~~q~~d~~ 116 (558)
T TIGR00118 41 EHILV-RHEQGAAHAADGYARASG--KVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPT-SLIGSDAFQEADIL 116 (558)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhC--CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCCc-cccCCCCCcccChh
Confidence 66666 789999999999997542 4544 356555556666677777789999998732221 11122347777777
Q ss_pred hHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 536 ASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 536 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
.+++.+=-.. ....++.++..+++.|++. ..||+||-+|+.
T Consensus 117 ~~~~~~tk~~-~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 117 GITMPITKHS-FQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred hhhcCcccee-EEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 8888765533 3345677777777766642 368999999875
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=89.55 E-value=5.2 Score=43.04 Aligned_cols=109 Identities=12% Similarity=0.083 Sum_probs=73.7
Q ss_pred cccchHHHHHHHHHhc----CCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCC--------
Q 005021 464 VREHGMGAICNGIALH----SPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH-------- 529 (719)
Q Consensus 464 IaE~~~vg~AaGlA~~----G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~TH-------- 529 (719)
..=.+.+++|.|++.. +. -++|+.+ -..|.+-.+..+-.++..+.++++++-+.+. ++.-|..-
T Consensus 69 ~~fg~~~a~a~Gi~~a~~~~~~-~~~Vv~~~GDG~~~dIG~~~L~~a~~r~~ni~~ivlDNe~-Y~nTGgQ~S~~Tp~Ga 146 (299)
T PRK11865 69 VAFENAAAVASGIERAVKALGK-KVNVVAIGGDGGTADIGFQSLSGAMERGHNILYLMYDNEA-YMNTGIQRSGSTPFGA 146 (299)
T ss_pred hhhcchHHHHHHHHHHHHHhcC-CCeEEEEeCCchHhhccHHHHHHHHHcCCCeEEEEECCcc-ccCCCCCCCCCCCCCc
Confidence 3335677788888665 42 1245543 4677777777777778889999888854443 32222111
Q ss_pred ------------------CChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 005021 530 ------------------QPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALS 575 (719)
Q Consensus 530 ------------------q~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~ 575 (719)
-.+..|+.-..+|-+....|.+..|+...++.|++ .+||++|..-
T Consensus 147 ~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~-~~Gps~I~v~ 209 (299)
T PRK11865 147 STTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE-VEGPAYIQVL 209 (299)
T ss_pred ccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 12344444467787888999999999999999996 7999999763
|
|
| >cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit | Back alignment and domain information |
|---|
Probab=89.32 E-value=15 Score=36.12 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=55.1
Q ss_pred HHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCC-----------CCChhhhh-
Q 005021 471 AICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPT-----------HQPIEHLA- 536 (719)
Q Consensus 471 g~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~T-----------Hq~~edia- 536 (719)
+.|.|+++... =++++.+ -..|+.-.+.-+......++|+++++.+++. +|.-+.. .+...|++
T Consensus 58 ~~AiGa~la~p-~~~Vv~i~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~-~g~~~~~~~~~~~~~~~~~~~~~d~~~ 135 (178)
T cd02008 58 GVAIGMAKASE-DKKVVAVIGDSTFFHSGILGLINAVYNKANITVVILDNRT-TAMTGGQPHPGTGKTLTEPTTVIDIEA 135 (178)
T ss_pred HHHhhHHhhCC-CCCEEEEecChHHhhccHHHHHHHHHcCCCEEEEEECCcc-eeccCCCCCCCCcccccCCCCccCHHH
Confidence 35666665532 2566655 3555433234455566779998887765543 3322211 00111222
Q ss_pred HHc--CCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 537 SFR--AMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 537 ~lr--~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
+.+ .++...|..|.+-.++..+++.+++ .++|++|..
T Consensus 136 ~a~a~G~~~~~v~~~~~l~~~~~al~~a~~-~~gp~lI~v 174 (178)
T cd02008 136 LVRAIGVKRVVVVDPYDLKAIREELKEALA-VPGVSVIIA 174 (178)
T ss_pred HHHHCCCCEEEecCccCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 222 3344455555555555588899886 689998865
|
IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA. |
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=89.25 E-value=2.1 Score=50.04 Aligned_cols=114 Identities=17% Similarity=0.080 Sum_probs=78.2
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ ..|++++.+|-|.|+.-. +|-+ .++.+=+..+...|.++-..+.||+++....... .+. | .+|.+..
T Consensus 40 ~~v~~-~hE~~A~~~Adgyar~sg--~~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~-~-~~q~~d~ 114 (548)
T PRK08978 40 EHLLC-RHEQGAAMAAIGYARATG--KVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLIGT-D-AFQEIDV 114 (548)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhC--CCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCC-C-CCcccch
Confidence 55555 889999999999998642 5544 3566656666677777778899999987332222 232 2 3777777
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
.++++.+-...... .+++++..+++.|++. ..||++|-+|+.
T Consensus 115 ~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 115 LGLSLACTKHSFLV-QSLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred hccccCceeeEEEE-CCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 78888776544433 4677777777666532 359999999874
|
|
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=89.20 E-value=2.3 Score=49.78 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=77.3
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ ..|++++.+|.|.|+... +|-+ .++.+=+..+...|.++-..+.||+++....... .+. + .+|.+.
T Consensus 47 i~~v~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~-~-~~q~~d 121 (557)
T PRK08199 47 IRVIVC-RQEGGAAMMAEAYGKLTG--RPGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDFRER-E-AFQEID 121 (557)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhcC--CCEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEecCCccccCCC-C-cccccC
Confidence 356665 789999999999998753 5544 3566666666667777777899999987322221 232 2 367777
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
...+++.+=... +...++.++..+++.|++ ...||++|-+|+.
T Consensus 122 ~~~l~~~~tk~~-~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~d 168 (557)
T PRK08199 122 YRRMFGPMAKWV-AEIDDAARIPELVSRAFHVATSGRPGPVVLALPED 168 (557)
T ss_pred HHHhhhhhhcee-eecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 888888765443 333567776666665553 2468999999875
|
|
| >cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins | Back alignment and domain information |
|---|
Probab=89.15 E-value=3.6 Score=39.99 Aligned_cols=115 Identities=17% Similarity=0.118 Sum_probs=70.0
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCC-----
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQ----- 530 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq----- 530 (719)
|++.+ -.|++++.+|.|.++..+ ..+|. +...=+..+...|.++...+.||+++....... .+.....|+
T Consensus 37 ~~i~~-rhE~~A~~mA~gyar~t~--~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~ 113 (162)
T cd07038 37 RWVGN-CNELNAGYAADGYARVKG--LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDG 113 (162)
T ss_pred eEEee-CCHHHHHHHHHHHHHhhC--CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEecCCCccccccccceeeccccc
Confidence 45544 789999999999999862 34443 344445556666767777899999997322211 232222232
Q ss_pred Chh-hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc---CCCcEEEEEcC
Q 005021 531 PIE-HLASFRAMPNILMLRPADGNETAGAYKVAVAN---RKRPSILALSR 576 (719)
Q Consensus 531 ~~e-dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~---~~~P~~irl~r 576 (719)
.++ +..+++.+=... ....+++++..+++.|++. .++|++|-+||
T Consensus 114 ~~~d~~~~~~~~tk~~-~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP~ 162 (162)
T cd07038 114 DFDVFLKMFEEITCAA-ARLTDPENAAEEIDRVLRTALRESRPVYIEIPR 162 (162)
T ss_pred chHHHHHHHHhheeEE-EEeCCHHHHHHHHHHHHHHHHHCCCCEEEEccC
Confidence 233 467787654433 3334666666666555422 35899998876
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many |
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.94 E-value=2.5 Score=49.45 Aligned_cols=116 Identities=11% Similarity=0.002 Sum_probs=75.0
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
=|++.+ --|++++.+|.|+|+... +|.++ +..+=+.-++..|.++-..+.||+++........ ..-.++|.++.
T Consensus 40 i~~v~~-~hE~~A~~mAdgyar~tg--kpgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~G~~~~~~-~~~~~~q~~d~ 115 (549)
T PRK06457 40 VKYVQV-RHEEGAALAASVEAKITG--KPSACMGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDM-IGHDYFQEVNL 115 (549)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhC--CCeEEEeCCCCchhhhHHHHHHHHhcCCCEEEEecCCCccc-cCCCcccccch
Confidence 345444 789999999999998653 66554 4555555666666666778999998863222111 11224677778
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r~ 577 (719)
..+++.+--. .+...++.++..+++.|++ ...||++|-+|..
T Consensus 116 ~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~D 160 (549)
T PRK06457 116 TKLFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVD 160 (549)
T ss_pred hhhhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHh
Confidence 8888876543 3444555665555555442 1469999999874
|
|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=88.90 E-value=2.9 Score=49.64 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=77.6
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCCh
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI 532 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ 532 (719)
=+++.+ -.|++++.+|.|+|+. | +|-+ .++..=+..+...|.++-..+.||+++....... .+. ..+|.+
T Consensus 70 i~~v~~-rhE~~A~~~Adgyar~tg---~~gv~~~t~GPG~~N~l~gl~~A~~~~~PllvI~G~~~~~~~~~--~~~q~~ 143 (612)
T PRK07789 70 VRHVLV-RHEQGAGHAAEGYAQATG---RVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLIGT--DAFQEA 143 (612)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhC---CCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--CcCccc
Confidence 366665 8999999999999986 5 4544 3455555556666777777899999987332222 222 236777
Q ss_pred hhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 533 EHLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 533 edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
...++++.+-.. .+...++.++..+++.|++. ..||++|-+|+.
T Consensus 144 d~~~l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 144 DIVGITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred chhhhhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccc
Confidence 777888876543 23455777777777666632 369999999975
|
|
| >cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) | Back alignment and domain information |
|---|
Probab=88.88 E-value=5.3 Score=39.28 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=62.4
Q ss_pred CCCCcc-cccccc-chHHHHHHHHHhcCCCCccEEEeh--hhhHHhHHHHHHHHhhhcCCEEEEEecCCC-ccCCCCCCC
Q 005021 455 PEERNV-RFGVRE-HGMGAICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISALCEAGVIYVMTHDSI-GLGEDGPTH 529 (719)
Q Consensus 455 ~p~R~~-d~GIaE-~~~vg~AaGlA~~G~~~~Pv~~~y--~~F~~ra~dqir~~a~~~~pV~~v~~~~g~-g~g~dG~TH 529 (719)
.|.|++ +.|..- ...++.|.|.++... +|++++. ..|+.-+ .-+......++|+++++-+++. +.-.....+
T Consensus 40 ~~~~~~~~~g~g~mG~~l~~aiGa~la~~--~~Vv~i~GDGsf~m~~-~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~ 116 (175)
T cd02009 40 KTVRVFANRGASGIDGTLSTALGIALATD--KPTVLLTGDLSFLHDL-NGLLLGKQEPLNLTIVVINNNGGGIFSLLPQA 116 (175)
T ss_pred CCceEEecCCccchhhHHHHHHHHHhcCC--CCEEEEEehHHHHHhH-HHHHhccccCCCeEEEEEECCCCchheeccCC
Confidence 467777 444321 123455666555432 6777654 4444322 2244445568998777755543 210000100
Q ss_pred -------------CChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 530 -------------QPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 530 -------------q~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
+.+.-.++.+++ |+.-+.-.+.+|++.+|+.+++ .++|++|-.
T Consensus 117 ~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~lIev 172 (175)
T cd02009 117 SFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALA-QDGPHVIEV 172 (175)
T ss_pred cccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 011111233332 4556677899999999999996 689998854
|
SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity. |
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=88.88 E-value=2.4 Score=49.87 Aligned_cols=114 Identities=12% Similarity=0.089 Sum_probs=77.3
Q ss_pred CccccccccchHHHHHHHHHhc-CCCCccEEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALH-SPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ -.|++++.+|.|.|+. |+ ..+|. ++..=+..+...|.++-..+.||+++....... .+. | .+|.++.
T Consensus 44 ~~i~~-rhE~~A~~mAdgYar~tg~--~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~d~ 118 (574)
T PRK07979 44 DHVLV-RHEQAAVHMADGLARATGE--VGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGY-D-AFQECDM 118 (574)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCC--ceEEEECCCccHhhhHHHHHHHhhcCCCEEEEECCCChhccCC-C-CCceecH
Confidence 56654 7899999999999975 63 34443 466666666666666667899999987332222 232 2 3676777
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
.++++.+=.. .+...+++++..+++.|++. ..||+||-+|+.
T Consensus 119 ~~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~D 164 (574)
T PRK07979 119 VGISRPVVKH-SFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKD 164 (574)
T ss_pred HHHhhcccce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 7888876542 34445777777777766642 469999999875
|
|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=88.84 E-value=2.7 Score=49.39 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=77.0
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ .-|++++.+|.|+|+... +|-++ ++.+=+.-+...|.++-..+.||+++....... .+. + .+|.+..
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~d~ 119 (572)
T PRK06456 45 RHVLM-RHEQAAAHAADGYARASG--VPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMGK-M-AFQEADA 119 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHhhC--CCEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEecCCCccccCC-C-Cccccch
Confidence 45555 789999999999998632 55443 577777777777777777899999987322222 232 2 3566777
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
..+++.+--...- ..+++++..+++.|++ ...||++|-+|+.
T Consensus 120 ~~i~~~~tk~~~~-v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 165 (572)
T PRK06456 120 MGVFENVTKYVIG-IKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRD 165 (572)
T ss_pred hhhhhccceeEEE-eCCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 7888876654433 3566676666665553 2469999999874
|
|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=88.77 E-value=1.7 Score=51.13 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=76.9
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
=|++.+ .-|++++.+|.|.|+... +|-++ +..+.+..+...|.++-..+.||+++........ .+-..+|.+..
T Consensus 50 i~~v~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~-~~~~~~Q~~d~ 125 (578)
T PRK06112 50 IRQIAY-RTENAGGAMADGYARVSG--KVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQ-TDRNAFQELDH 125 (578)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhC--CCEEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCcccc-CCCCCccccCh
Confidence 466666 699999999999998632 56554 4556666666777777778999998873222221 12234777888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~~~P~~irl~r~ 577 (719)
..+++.+--. .....+++++...++.|+ ....||++|-+|..
T Consensus 126 ~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 126 IALFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred hhhhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 8888877653 234455555555555444 33468999999875
|
|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=88.76 E-value=3.2 Score=48.99 Aligned_cols=114 Identities=11% Similarity=0.085 Sum_probs=75.7
Q ss_pred CccccccccchHHHHHHHHHhcC-CCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 458 RNVRFGVREHGMGAICNGIALHS-PGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G-~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
|++.+ --|++++.+|-|.|+.. . +|-|+ ++..=+..+...|.++-..+.||+++....... .+. ..+|.+.
T Consensus 43 ~~V~~-rhE~~A~~mAdgyaR~t~g--~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~D 117 (588)
T TIGR01504 43 RHILA-RHVEGASHMAEGYTRATAG--NIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHK--EDFQAVD 117 (588)
T ss_pred cEEee-CCHHHHHHHHHHHHHhcCC--CeEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccC
Confidence 55554 67999999999999853 2 45443 454544455556666667899999997333322 222 2377777
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
..++++.+=-. .+...++.++..+++.|++ ...||++|-+|+.
T Consensus 118 ~~~~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 164 (588)
T TIGR01504 118 IAAIAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFD 164 (588)
T ss_pred HHHHhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcc
Confidence 77888876543 3344577777777777664 3468999999985
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=88.48 E-value=2.8 Score=49.37 Aligned_cols=114 Identities=9% Similarity=-0.020 Sum_probs=75.4
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++. ...|++++.+|.|+|+... +|-++ ++.+=+..+...|.++-..+.||+++....... .+ .+ .+|.+..
T Consensus 45 ~~i~-~rhE~~A~~mAdgyar~tg--~~gv~~~t~GPG~~N~l~gla~A~~~~~Pvl~ItG~~~~~~~~-~~-~~q~~d~ 119 (576)
T PRK08611 45 KFIQ-VRHEEVAALAAAAYAKLTG--KIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLG-TD-FFQEVNL 119 (576)
T ss_pred eEEE-eCcHHHHHHHHHHHHHHhC--CceEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCcccccC-CC-CccccCH
Confidence 6665 4789999999999997543 55443 455555566666766677899999987332222 22 22 3676777
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r~ 577 (719)
..+++.+--. .+...+++++..++..|++ ...||++|-+|..
T Consensus 120 ~~l~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~D 164 (576)
T PRK08611 120 EKMFEDVAVY-NHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDD 164 (576)
T ss_pred HHHhhcccce-eEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 8889877543 2345566666665555432 2469999999875
|
|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=88.40 E-value=2.5 Score=49.68 Aligned_cols=116 Identities=11% Similarity=0.070 Sum_probs=75.9
Q ss_pred CCCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCCh
Q 005021 456 EERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI 532 (719)
Q Consensus 456 p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ 532 (719)
+-+++.+ .-|+.++.+|.|+|+... +|-++ ++.+=+..+...|.++-..+.||+++....... .+. | .+|.+
T Consensus 53 ~i~~i~~-~hE~~A~~~A~gyar~tg--~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~-~-~~q~~ 127 (571)
T PRK07710 53 GIPHILT-RHEQGAIHAAEGYARISG--KPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIGS-D-AFQEA 127 (571)
T ss_pred CCcEEEe-CCHHHHHHHHHHHHHHhC--CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEeccCCccccCC-C-Ccccc
Confidence 4578866 899999999999998642 55443 455545555566666667799999886222211 232 2 35667
Q ss_pred hhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 533 EHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 533 edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
++.++++.+-... +...+++++..+++.|++ ...||++|-+|+.
T Consensus 128 d~~~l~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 128 DIMGITMPVTKHN-YQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred chhhhhhcccceE-EecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence 7888888765443 234456666666655543 2369999999874
|
|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=88.16 E-value=2.6 Score=49.38 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=78.0
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ ..|++++.+|.|+|+... +|-+ .++.+=+..++..|.++...+.||+++....... .+. ..+|.+.
T Consensus 52 i~~i~~-~hE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d 126 (564)
T PRK08155 52 IRHILA-RHEQGAGFIAQGMARTTG--KPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIGT--DAFQEVD 126 (564)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHcC--CCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeccCCcccccC--CCccccc
Confidence 467774 899999999999999753 6644 3566655666777777777899999987322222 232 2467777
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
..++++.+--...- -.++.++..+++.|++. ..||++|-+|+.
T Consensus 127 ~~~~~~~~tk~~~~-v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 127 TYGISIPITKHNYL-VRDIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred hhhhhhccceEEEE-cCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 77788876554333 34677777766666532 369999999874
|
|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=87.83 E-value=3 Score=48.79 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=77.0
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ ..|++++.+|.|.|+... +|-++ ++.+=+.-+...|.++...+.||+++....... .+. ..||.+.
T Consensus 43 i~~i~~-~hE~~A~~~A~gyar~tg--~~gv~~vt~GpG~~N~l~gl~~A~~~~~PvlvisG~~~~~~~~~--~~~q~~d 117 (552)
T PRK08617 43 PELIVT-RHEQNAAFMAAAIGRLTG--KPGVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQVKRADRLK--RTHQSMD 117 (552)
T ss_pred CCEEEe-ccHHHHHHHHHhHhhhcC--CCEEEEECCCCcHhHhHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccc
Confidence 456665 889999999999998743 55443 455555556666666667899999986322211 232 2488888
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
+..+++.+-- ..+.-.++.++..++..|++ ...||++|-+|+.
T Consensus 118 ~~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 164 (552)
T PRK08617 118 NVALFRPITK-YSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQD 164 (552)
T ss_pred hhhhhhhhcc-eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhh
Confidence 8888887754 33444566676666665553 2368999999874
|
|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=87.41 E-value=3.8 Score=48.37 Aligned_cols=115 Identities=10% Similarity=0.064 Sum_probs=77.8
Q ss_pred CCccccccccchHHHHHHHHHhcC-CCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCCh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHS-PGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI 532 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G-~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ 532 (719)
=|++.+ .-|++++.+|-|+|+.. . +|-+ .++.+-+..+...+.++-..+.||+++....... .+. ..+|.+
T Consensus 43 i~~v~~-rhE~~A~~mAdGYar~t~g--~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~ 117 (591)
T PRK11269 43 IRHILA-RHVEGASHMAEGYTRATAG--NIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHK--EDFQAV 117 (591)
T ss_pred CcEEee-CCHHHHHHHHHHHHHHcCC--CcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--Cccccc
Confidence 377777 79999999999999764 3 4443 3666666666666666677899999887322222 232 237777
Q ss_pred hhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 533 EHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 533 edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
...++++.+=-. .+...++.++..+++.|++ ...||++|-+|+.
T Consensus 118 d~~~l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 165 (591)
T PRK11269 118 DIESIAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFD 165 (591)
T ss_pred ChhhHhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChh
Confidence 788888865443 2344667777776666653 2358999999975
|
|
| >PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated | Back alignment and domain information |
|---|
Probab=87.40 E-value=1.9 Score=50.65 Aligned_cols=116 Identities=18% Similarity=0.154 Sum_probs=77.9
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccE-E-EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPY-C-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv-~-~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|++.+ .-|++++-+|-|.|+... +|- | .++.+=+.-++..|..+-..+.||+++........ .+-..+|.+.+.
T Consensus 49 ~~v~~-~hE~~A~~aAdgyar~tg--~~~v~~vt~GpG~~N~l~~i~~A~~~~~Pvl~IsG~~~~~~-~~~~~~q~~d~~ 124 (568)
T PRK07449 49 RLHTH-FDERSAGFLALGLAKASK--RPVAVIVTSGTAVANLYPAVIEAGLTGVPLIVLTADRPPEL-RDCGANQAIDQL 124 (568)
T ss_pred EEEee-cCcccHHHHHHHHHHhhC--CCEEEEECCccHHHhhhHHHHHHhhcCCcEEEEECCCCHHH-hcCCCCceecHh
Confidence 56655 789999999999997653 553 3 46776666677777777788999999973222211 122337888889
Q ss_pred hHHcCCCCeEEEeeCCHH-----HHHHHHHH---HHHcCCCcEEEEEcCC
Q 005021 536 ASFRAMPNILMLRPADGN-----ETAGAYKV---AVANRKRPSILALSRQ 577 (719)
Q Consensus 536 a~lr~iPnl~V~~P~d~~-----e~~~~l~~---a~~~~~~P~~irl~r~ 577 (719)
++++.+-...+-.|.+.. .+..+++. +.....|||+|-+|..
T Consensus 125 ~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~D 174 (568)
T PRK07449 125 GLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFR 174 (568)
T ss_pred hHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCC
Confidence 999987755666665521 13345555 3333579999999975
|
|
| >TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase | Back alignment and domain information |
|---|
Probab=87.36 E-value=2.6 Score=47.78 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=75.6
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ .-|++++-+|-|+|+... +|-+ .++..=...+...|..+-..+.||+++....... .+. | .+|.+.+
T Consensus 40 ~~v~~-~hE~~A~~mAdgyar~tg--~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~-~-~~q~~d~ 114 (432)
T TIGR00173 40 RVHVH-IDERSAGFFALGLAKASG--RPVAVVCTSGTAVANLLPAVIEASYSGVPLIVLTADRPPELRGC-G-ANQTIDQ 114 (432)
T ss_pred EEEEe-cCCccHHHHHHHHHhccC--CCEEEEECCcchHhhhhHHHHHhcccCCcEEEEeCCCCHHHhCC-C-CCcccch
Confidence 55554 889999999999999742 4544 3555555556666666667899999986322211 232 2 3677778
Q ss_pred hhHHcCCCCe--EEEeeCC-------HHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 005021 535 LASFRAMPNI--LMLRPAD-------GNETAGAYKVAVANRKRPSILALSRQK 578 (719)
Q Consensus 535 ia~lr~iPnl--~V~~P~d-------~~e~~~~l~~a~~~~~~P~~irl~r~~ 578 (719)
..+++.+=-. +|-.|.+ +..+..+++.|+....||++|-+|..-
T Consensus 115 ~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 115 PGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred hhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 8888866543 3334554 244666676666545699999998753
|
2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis. |
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=87.10 E-value=4 Score=48.15 Aligned_cols=115 Identities=14% Similarity=0.174 Sum_probs=74.4
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEE-EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~-~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ -.|++++.+|.|.|+. |+ ..+| .++..=+..+...|.++-..+.||+++....... .+. ..+|.+.
T Consensus 44 i~~i~~-rhE~~A~~~Adgyar~tg~--~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~--~~~q~~d 118 (588)
T PRK07525 44 IRFIDV-AHEQNAGHMADGYTRVTGR--MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVTPQAGTKTIGQ--GGFQEAE 118 (588)
T ss_pred CCEEEe-cCHHHHHHHHHHHHHHhCC--CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEeCCCCcccCCC--CCCcccc
Confidence 366665 8899999999999976 53 3343 3455544555556666667799999997222221 232 2477778
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r~ 577 (719)
+..+++.+=.. .+...+++++...++.|++ ...||+||-+|+.
T Consensus 119 ~~~l~~~~tk~-~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~D 164 (588)
T PRK07525 119 QMPMFEDMTKY-QEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRD 164 (588)
T ss_pred hhhhhhhheeE-EEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 88888876442 3445566666665555442 2479999999975
|
|
| >COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.88 E-value=1.4 Score=41.48 Aligned_cols=107 Identities=17% Similarity=0.122 Sum_probs=67.4
Q ss_pred ccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHH-hhhcCCEEEEEecCCCccCCCCCCCCC--hhhhhHHcCC
Q 005021 465 REHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQP--IEHLASFRAM 541 (719)
Q Consensus 465 aE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~-a~~~~pV~~v~~~~g~g~g~dG~THq~--~edia~lr~i 541 (719)
+|...+|+|+|..+.|+ +|-..+..+=+....+.+-.. ..-++|..++++|-|. ++++=+.+-+ -.-..+|+.
T Consensus 50 REEeg~GIcAGa~lAGk--k~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~-~~E~i~AQVpmGr~~~kiLe~- 125 (172)
T COG4032 50 REEEGVGICAGAYLAGK--KPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGV-LKEGIEAQVPMGRALPKILEG- 125 (172)
T ss_pred chhcceeeehhhhhcCC--CcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccch-hhcCCccccccchhhHHHHhh-
Confidence 57888999999999997 998887665555555554332 3468999999877654 4543333321 111122221
Q ss_pred CCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEc
Q 005021 542 PNILMLRPADGNETAGAYKVAVA---NRKRPSILALS 575 (719)
Q Consensus 542 Pnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~ 575 (719)
=++-.+.|-.++|+..++..+.. ....|+.+.++
T Consensus 126 ~~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls 162 (172)
T COG4032 126 LELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLS 162 (172)
T ss_pred cCCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEec
Confidence 24456778888887666655432 24788888764
|
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=86.82 E-value=5 Score=47.25 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=74.6
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEE-EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~-~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ --|++++.+|.|.|+. |+ ..+| .++..=+..+...|.++-..+.||+++....+.. .+. ..||.+.
T Consensus 40 i~~i~~-rhE~~A~~~Adgyar~tg~--~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~g~~~~~~~~~--~~~Q~~d 114 (579)
T TIGR03457 40 IRFIPV-VHEQGAGHMADGFARVTGR--MSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVTPEAGTKTIGL--GGFQEAD 114 (579)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCC--CEEEEECCCchHHHHHHHHHHHhhcCCCEEEEeCCCccccCCC--CCCcccc
Confidence 356665 7899999999999975 53 3333 3455555556666666677899999997222221 222 3478777
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHH----HHcCCCcEEEEEcCCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVA----VANRKRPSILALSRQK 578 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a----~~~~~~P~~irl~r~~ 578 (719)
...+++.+=.. .+...++.++...++.| .. ..||+||-+|+.-
T Consensus 115 ~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~Dv 161 (579)
T TIGR03457 115 QLPMFQEFTKY-QGHVRHPSRMAEVLNRCFERAWR-EMGPAQLNIPRDY 161 (579)
T ss_pred hhhhhhcceeE-EEecCCHHHHHHHHHHHHHHHhc-CCCCEEEEeCcch
Confidence 77888876542 23345666666655544 43 3589999999853
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=86.49 E-value=4.5 Score=47.84 Aligned_cols=116 Identities=13% Similarity=0.096 Sum_probs=76.3
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ --|++++.+|-|.|+. |+ ..+|. ++..=+..+...|.++-..+.||+++....... .+. .++|.+.
T Consensus 50 i~~I~~-rhE~~A~~mAdgyar~tg~--~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d 124 (595)
T PRK09107 50 IQHILV-RHEQGAGHAAEGYARSTGK--PGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHLIGS--DAFQECD 124 (595)
T ss_pred CeEEEE-CChHHHHHHHHHHHHHhCC--CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEEcCCChhhcCC--CCCcccc
Confidence 467776 8999999999999965 63 33433 455555555666666667899999887322211 232 3477777
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQK 578 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~~ 578 (719)
..++++.+=-. .+...+++++..+++.|++. ..||+||-+|+.-
T Consensus 125 ~~~l~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 172 (595)
T PRK09107 125 TVGITRPCTKH-NWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV 172 (595)
T ss_pred hhhhhhhheEE-EEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCCh
Confidence 77777765332 23455677777777666642 3699999999753
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=86.13 E-value=4.6 Score=47.42 Aligned_cols=115 Identities=13% Similarity=0.077 Sum_probs=75.4
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEE-EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~-~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ --|++++.+|.|.|+. |+ ..+| .++..=+..+...|.++-..+.||+++....... .+.+ .+|.++
T Consensus 49 i~~i~~-rhE~~A~~~Adgyar~tg~--~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d 123 (566)
T PRK07282 49 IRHILA-RHEQGALHEAEGYAKSTGK--LGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGIGKD--AFQEAD 123 (566)
T ss_pred ceEEEe-cCHHHHHHHHHHHHHHhCC--CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecccccccCCCC--CccccC
Confidence 377776 8999999999999976 53 3333 3455545555566666666799999997332221 2322 466677
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
..++++.+=.... ...++.++..+++.|++. ..||+||-+|+.
T Consensus 124 ~~~~~~~itk~s~-~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 170 (566)
T PRK07282 124 IVGITMPITKYNY-QIRETADIPRIITEAVHIATTGRPGPVVIDLPKD 170 (566)
T ss_pred hhchhcCCCceeE-EcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChh
Confidence 7778877655433 344666666666666543 369999999875
|
|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=86.04 E-value=4.7 Score=47.56 Aligned_cols=115 Identities=16% Similarity=0.072 Sum_probs=76.9
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ --|++++.+|.|+|+... +|-+ .++..=+.-+..-|.++-..+.||+++....... .+. + .+|.+.
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G~~~~~~~~~-~-~~q~~d 126 (585)
T PLN02470 52 IRNVLC-RHEQGEVFAAEGYAKASG--KVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMIGT-D-AFQETP 126 (585)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhC--CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEecCCChhhcCC-C-cCcccc
Confidence 467776 889999999999997642 4444 3555655566666666667899999997322221 132 2 367677
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
+..+++.+=... +...+++++..+++.|++. ..|||+|-+|..
T Consensus 127 ~~~l~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 127 IVEVTRSITKHN-YLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred hhhhhhhheEEE-EEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 777777654322 3345778888877777642 369999999975
|
|
| >PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=85.97 E-value=16 Score=39.20 Aligned_cols=150 Identities=13% Similarity=0.055 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccc-c--ccchHHHHHHHHHhcCCCCccE
Q 005021 410 ATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFG-V--REHGMGAICNGIALHSPGLIPY 486 (719)
Q Consensus 410 s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~G-I--aE~~~vg~AaGlA~~G~~~~Pv 486 (719)
..-.++.++|.++.....+.+ +..|++-+.. +| ++++++ + .=...+.+|.|+++... =+++
T Consensus 27 ~il~~l~~al~~l~~~p~d~v-vvsdiGc~~~-------------~~-~~~~~~~~~g~mG~alpaAiGaklA~P-d~~V 90 (286)
T PRK11867 27 SILAALQRALAELGLDPENVA-VVSGIGCSGR-------------LP-GYINTYGFHTIHGRALAIATGLKLANP-DLTV 90 (286)
T ss_pred HHHHHHHHHHHHhCCCCCcEE-EEeCCccccc-------------cC-ccccccchhhhhhcHHHHHHHHHHhCC-CCcE
Confidence 344556666666654333444 3466653321 11 233331 1 11344556777666532 2666
Q ss_pred EEeh--hhhHHhHHHHHHHHhhhcCCEEEEEecCC-Ccc--CCCCC----------CCCC-----hhhhhHHcCCCC--e
Q 005021 487 CATF--FVFTDYMRAAIRISALCEAGVIYVMTHDS-IGL--GEDGP----------THQP-----IEHLASFRAMPN--I 544 (719)
Q Consensus 487 ~~~y--~~F~~ra~dqir~~a~~~~pV~~v~~~~g-~g~--g~dG~----------THq~-----~edia~lr~iPn--l 544 (719)
+.+- .++++....-+...+..++|+++++-+++ +|. +...+ +.++ ..-.++..+... +
T Consensus 91 V~i~GDG~~f~mg~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~v 170 (286)
T PRK11867 91 IVVTGDGDALAIGGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFV 170 (286)
T ss_pred EEEeCccHHHhCCHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEE
Confidence 6653 33333333444455678999888775543 221 11111 0011 111223333322 3
Q ss_pred EEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcC
Q 005021 545 LMLRPADGNETAGAYKVAVANRKRPSILALSR 576 (719)
Q Consensus 545 ~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r 576 (719)
......+..|+..+++.|++ +++|++|-.-.
T Consensus 171 a~~~~~~~~el~~al~~Al~-~~Gp~lIev~~ 201 (286)
T PRK11867 171 ARGFDSDVKQLTELIKAAIN-HKGFSFVEILQ 201 (286)
T ss_pred EEecCCCHHHHHHHHHHHHh-CCCCEEEEEeC
Confidence 33357899999999999996 69999987643
|
|
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=85.95 E-value=3.3 Score=48.73 Aligned_cols=115 Identities=8% Similarity=-0.056 Sum_probs=74.6
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
=|++.+ --|++++.+|-|.|+... +|-++ ++..=+..+...|.++-..+.||+++...... ...+-.++|.+..
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tg--k~gv~~~t~GPG~~n~~~~i~~A~~~~~Pvl~I~G~~~~-~~~~~~~~q~id~ 114 (575)
T TIGR02720 39 IHYIQV-RHEEVGALAAAADAKLTG--KIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPT-TGMNMDTFQEMNE 114 (575)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhC--CceEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCcc-ccCCCCCcceech
Confidence 356655 789999999999997542 55443 45555555666666666779999998732222 2223445777877
Q ss_pred hhHHcCCCCeEEEeeCCHHHH----HHHHHHHHHcCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNET----AGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~----~~~l~~a~~~~~~P~~irl~r~ 577 (719)
.++++.+=-. .....+++++ ..+++.|+. ..+|+||-+|+.
T Consensus 115 ~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~D 159 (575)
T TIGR02720 115 NPIYADVAVY-NRTAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVD 159 (575)
T ss_pred hhhhhhcceE-EEEeCCHHHHHHHHHHHHHHHhh-CCCCEEEEECcc
Confidence 7888865432 1233444444 455666665 679999999975
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv | Back alignment and domain information |
|---|
Probab=85.91 E-value=21 Score=36.02 Aligned_cols=115 Identities=15% Similarity=0.076 Sum_probs=64.3
Q ss_pred CCCCCccccccccchHHH----HHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCC-Ccc----
Q 005021 454 TPEERNVRFGVREHGMGA----ICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDS-IGL---- 522 (719)
Q Consensus 454 ~~p~R~~d~GIaE~~~vg----~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g-~g~---- 522 (719)
+.|.+|+..+- ...+| .|.|.++... =+|++++ -..|+.-. .-+-..+..++|+++++.+++ ++.
T Consensus 36 ~~~~~~~~~~~--~gsmG~~lpaAiGa~la~p-~~~vv~i~GDGsf~m~~-~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~ 111 (205)
T cd02003 36 RTPGGYHLEYG--YSCMGYEIAAGLGAKLAKP-DREVYVLVGDGSYLMLH-SEIVTAVQEGLKIIIVLFDNHGFGCINNL 111 (205)
T ss_pred CCCCcEEcCCC--cchhhhHHHHHHHHHHhCC-CCeEEEEEccchhhccH-HHHHHHHHcCCCCEEEEEECCccHHHHHH
Confidence 45788886532 33344 5566554431 2566654 34555321 123344567999877775554 321
Q ss_pred ----CCC--CCC--------------CCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 523 ----GED--GPT--------------HQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 523 ----g~d--G~T--------------Hq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
+.. +.. .+...-..+.+++ |+..+.-.+++|++.+|+.+++ .++|++|-.
T Consensus 112 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~-~~gp~lIeV 181 (205)
T cd02003 112 QESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSL-GARVEKVKTIEELKAALAKAKA-SDRTTVIVI 181 (205)
T ss_pred HHHhcCccccchhcccccccccccCCCCCCCHHHHHHhC-CCEEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 100 000 0111112233333 5666677899999999999996 689998854
|
viciae IolD. IolD plays an important role in myo-inositol catabolism. |
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=85.89 E-value=5 Score=47.32 Aligned_cols=115 Identities=15% Similarity=0.071 Sum_probs=76.4
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|++.+ -.|++++.+|-|.|+... +|-|+ ++..=+.-+...|.++-..+.||+++....... ......+|.+.+.
T Consensus 40 ~~i~~-~hE~~A~~~Adgyar~tg--~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~G~~~~~-~~~~~~~q~~d~~ 115 (586)
T PRK06276 40 IHILT-RHEQAAAHAADGYARASG--KVGVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTK-LIGNDAFQEIDAL 115 (586)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhC--CCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCCcc-ccCCCCCccccHh
Confidence 55655 699999999999997632 55443 455555566667777778899999987322221 1122347777788
Q ss_pred hHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 536 ASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 536 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
++++.+=.... .-.++.++..+++.|++. ..||+||-+|+.
T Consensus 116 ~l~~~~tk~s~-~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 116 GIFMPITKHNF-QIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred hHHhhhcceEE-ecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 88887655433 334566666666666542 368999999875
|
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.77 E-value=5.7 Score=46.69 Aligned_cols=113 Identities=11% Similarity=-0.027 Sum_probs=72.8
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ --|++++-+|-|.|+... +|-+++ ...=...+...|.++-..+.||+++....... .+. ..||.+.+
T Consensus 43 ~~i~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~Q~~d~ 117 (574)
T PRK09124 43 EWMHT-RHEEVAAFAAGAEAQLTG--ELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHP 117 (574)
T ss_pred cEEEe-CcHHHHHHHHHHHHHhhC--CcEEEEECCCCCHHHHHHHHHHHhhcCCCEEEEecCCccccCCC--CCccccCh
Confidence 55544 689999999999999743 565543 33334455566666667899999886322221 232 24787888
Q ss_pred hhHHcCCCCeEEEeeCCHHH----HHHHHHHHHHcCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNE----TAGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e----~~~~l~~a~~~~~~P~~irl~r~ 577 (719)
..+++.+--.. ....++++ +..+++.|+. ..+|++|-+|+.
T Consensus 118 ~~l~~~itk~~-~~v~~~~~~~~~i~~A~~~A~~-~~gPV~l~iP~D 162 (574)
T PRK09124 118 QELFRECSHYC-ELVSNPEQLPRVLAIAMRKAIL-NRGVAVVVLPGD 162 (574)
T ss_pred hhhcccceeee-EEeCCHHHHHHHHHHHHHHHhc-CCCCEEEEeChh
Confidence 88888654322 23445555 4445556664 469999999874
|
|
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=85.49 E-value=3.4 Score=48.32 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=74.6
Q ss_pred CccccccccchHHHHHHHHHhcCCCCcc-EEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCcc-CCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIP-YCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGL-GEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~P-v~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~-g~dG~THq~~ed 534 (719)
|++.+ --|++++.+|-|.|+... +| +|. +...=+.-+...|.++-..+.||+++........ +..-..||.+.+
T Consensus 42 ~~i~~-rhE~~A~~mAdgyar~tg--~~gv~~~t~GPG~~N~~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~ 118 (554)
T TIGR03254 42 RYIGF-RHEQSAGYAAAAAGFLTQ--KPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQ 118 (554)
T ss_pred cEEEe-CCHHHHHHHHHHHHHHhC--CCEEEEEccCccHHhHHHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhH
Confidence 66665 889999999999997632 44 333 3455445556666666678999998863222211 112234777788
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHH----HHHcCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKV----AVANRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~----a~~~~~~P~~irl~r~ 577 (719)
.++++.+=.. .+...++.++..+++. |+....|||||-+|+.
T Consensus 119 ~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~D 164 (554)
T TIGR03254 119 LAAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAA 164 (554)
T ss_pred HHHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHH
Confidence 8888876543 3445566666555544 4433468999999874
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
Probab=85.42 E-value=12 Score=36.95 Aligned_cols=117 Identities=17% Similarity=0.069 Sum_probs=66.7
Q ss_pred CCCCCcccccc-c-cchHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCC-cc------
Q 005021 454 TPEERNVRFGV-R-EHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSI-GL------ 522 (719)
Q Consensus 454 ~~p~R~~d~GI-a-E~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~-g~------ 522 (719)
..|.+|+..+. . =...++.|.|.++... =+|++++ -..|+.-. .-+...+..++|+++++.+++. +.
T Consensus 38 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~-~~~vv~i~GDG~f~~~~-~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~ 115 (186)
T cd02015 38 KKPRSWLTSGGLGTMGFGLPAAIGAKVARP-DKTVICIDGDGSFQMNI-QELATAAQYNLPVKIVILNNGSLGMVRQWQE 115 (186)
T ss_pred CCCCeEEeCCCccchhchHHHHHHHHHhCC-CCeEEEEEcccHHhccH-HHHHHHHHhCCCeEEEEEECCccHHHHHHHH
Confidence 35788886532 1 1234456666665531 2566654 35565332 2255566779998887766653 21
Q ss_pred ---CCC-CCCCC-Chhhhh-HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 523 ---GED-GPTHQ-PIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 523 ---g~d-G~THq-~~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
+.. ..++. ..-|.+ +.+++ |+.-+.-.+..|+..+++.+.. .++|++|-.
T Consensus 116 ~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev 171 (186)
T cd02015 116 LFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALA-SDGPVLLDV 171 (186)
T ss_pred HHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 010 11111 112322 33333 5556666789999999999986 689999865
|
AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. |
| >cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor | Back alignment and domain information |
|---|
Probab=85.42 E-value=13 Score=37.24 Aligned_cols=104 Identities=13% Similarity=0.002 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCCCccEEEeh--hhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCC--------------CCh
Q 005021 469 MGAICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTH--------------QPI 532 (719)
Q Consensus 469 ~vg~AaGlA~~G~~~~Pv~~~y--~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~TH--------------q~~ 532 (719)
.++.|.|.++... =+|++.+. ..|.+.....+......++||++++-+++. +|.-+..+ ++.
T Consensus 56 glpaAiGa~la~p-~r~Vv~i~GDGs~f~m~~~eL~ta~~~~lpv~iiVlnN~~-yg~~~~~~~~~~~~~~~~~~~~~~~ 133 (193)
T cd03375 56 ALAVATGVKLANP-DLTVIVVSGDGDLAAIGGNHFIHAARRNIDITVIVHNNQI-YGLTKGQASPTTPEGFKTKTTPYGN 133 (193)
T ss_pred HHHHHHHHHHhCC-CCeEEEEeccchHhhccHHHHHHHHHhCCCeEEEEEcCcc-cccCCCccCCCCCCCCcccCCCCCC
Confidence 3446666655432 36777654 334334344466667789999877755433 33222110 000
Q ss_pred ----hhh-hHHcC--CCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 005021 533 ----EHL-ASFRA--MPNILMLRPADGNETAGAYKVAVANRKRPSILALS 575 (719)
Q Consensus 533 ----edi-a~lr~--iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~ 575 (719)
-|. .+.++ .+........++.|+..+|+.+++ .++|++|-+.
T Consensus 134 ~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~-~~gp~vIev~ 182 (193)
T cd03375 134 IEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ-HKGFSFVEVL 182 (193)
T ss_pred CCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh-cCCCEEEEEE
Confidence 111 22232 233322468999999999999996 6999998663
|
In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity. |
| >PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=85.06 E-value=14 Score=35.27 Aligned_cols=116 Identities=19% Similarity=0.096 Sum_probs=67.9
Q ss_pred CCCCCcccc--ccccchHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCC-cc-C----
Q 005021 454 TPEERNVRF--GVREHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSI-GL-G---- 523 (719)
Q Consensus 454 ~~p~R~~d~--GIaE~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~-g~-g---- 523 (719)
..|.||+.. .-+=...++.|.|.++... =++++.+ -..|+.- ...+......++|+++++-+++. +. +
T Consensus 16 ~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p-~~~vv~i~GDG~f~~~-~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~ 93 (153)
T PF02775_consen 16 RRPRRFLTSGGFGSMGYALPAAIGAALARP-DRPVVAITGDGSFLMS-LQELATAVRYGLPVVIVVLNNGGYGMTGGQQT 93 (153)
T ss_dssp SSTTEEEESTTTT-TTTHHHHHHHHHHHST-TSEEEEEEEHHHHHHH-GGGHHHHHHTTSSEEEEEEESSBSHHHHHHHH
T ss_pred CCCCeEEcCCCccccCCHHHhhhHHHhhcC-cceeEEecCCcceeec-cchhHHHhhccceEEEEEEeCCcceEeccccc
Confidence 347888772 3344566677777777632 2666654 4556544 33355566778898887755543 21 0
Q ss_pred CCCC-C--------CCChhhhhHHcCCCCeEEEe--eCCHHHHHHHHHHHHHcCCCcEEEE
Q 005021 524 EDGP-T--------HQPIEHLASFRAMPNILMLR--PADGNETAGAYKVAVANRKRPSILA 573 (719)
Q Consensus 524 ~dG~-T--------Hq~~edia~lr~iPnl~V~~--P~d~~e~~~~l~~a~~~~~~P~~ir 573 (719)
..+. + .+.+.-..+.+++ |+..++ +.|.+|++.+|+.+++ .++|++|-
T Consensus 94 ~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~-~~gp~vIe 152 (153)
T PF02775_consen 94 PFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALE-SGGPAVIE 152 (153)
T ss_dssp HTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHH-SSSEEEEE
T ss_pred cCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHh-CCCcEEEE
Confidence 0111 1 2222222334443 555555 4455999999999996 79999984
|
It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A .... |
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=84.96 E-value=6.2 Score=46.30 Aligned_cols=114 Identities=12% Similarity=0.021 Sum_probs=77.8
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ -.|++++.+|.|+|+... +|-| .++..=+..+...|.++-..+.||+++....... .+. ..+|.+.+
T Consensus 43 ~~v~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 117 (563)
T PRK08527 43 KHILT-RHEQAAVHAADGYARASG--KVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSLIGT--DAFQEIDA 117 (563)
T ss_pred eEEEe-ccHHHHHHHHHHHHhhhC--CCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCC--CCCcccch
Confidence 56555 899999999999997542 4433 3455555556666766677899999987322211 222 24777888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
.++++.+=. ..+...+++++..+++.|++. ..||+||-+|..
T Consensus 118 ~~~~~~~tk-~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 118 VGISRPCVK-HNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred hhhhhcccc-eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 788887654 334557888888888777643 358999999864
|
|
| >cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) | Back alignment and domain information |
|---|
Probab=84.88 E-value=6.2 Score=39.57 Aligned_cols=117 Identities=13% Similarity=0.032 Sum_probs=65.2
Q ss_pred CCCCCcccccc-cc-chHHHHHHHHHhcCCCCccEEEeh--hhhHHhHHHHHHHHhhhcCCEEEEEecC-CCcc-CC---
Q 005021 454 TPEERNVRFGV-RE-HGMGAICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISALCEAGVIYVMTHD-SIGL-GE--- 524 (719)
Q Consensus 454 ~~p~R~~d~GI-aE-~~~vg~AaGlA~~G~~~~Pv~~~y--~~F~~ra~dqir~~a~~~~pV~~v~~~~-g~g~-g~--- 524 (719)
..|.+|+..+- .= ...+..|.|.++... =+|++++. ..|+.-. .-+...+..++|+++++-++ +++. ..
T Consensus 41 ~~~~~~~~~~~~g~mG~~lpaaiGa~la~p-~r~vv~i~GDG~f~m~~-~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~ 118 (196)
T cd02013 41 EKPRSFIAPLSFGNCGYALPAIIGAKAAAP-DRPVVAIAGDGAWGMSM-MEIMTAVRHKLPVTAVVFRNRQWGAEKKNQV 118 (196)
T ss_pred CCCCeEEcCCCCcccccHHHHHHHHHHhCC-CCcEEEEEcchHHhccH-HHHHHHHHhCCCeEEEEEECchhHHHHHHHH
Confidence 45788886421 11 234456666655431 26777653 4554432 22444556689988887444 3331 10
Q ss_pred --CCC-----CCCChhhhh-HHcCCCCeEEEeeCCHHHHHHHHHHHHH--cCCCcEEEEE
Q 005021 525 --DGP-----THQPIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVA--NRKRPSILAL 574 (719)
Q Consensus 525 --dG~-----THq~~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~--~~~~P~~irl 574 (719)
.+. .+.. -|.+ +.+++ |+.-+.-.+..|+..+|+.+++ +.++|++|-.
T Consensus 119 ~~~~~~~~~~~~~~-~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~liev 176 (196)
T cd02013 119 DFYNNRFVGTELES-ESFAKIAEAC-GAKGITVDKPEDVGPALQKAIAMMAEGKTTVIEI 176 (196)
T ss_pred HHcCCCcccccCCC-CCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 010 1111 1222 33333 5666677889999999999985 1489998865
|
Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. |
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=84.81 E-value=6.6 Score=46.18 Aligned_cols=115 Identities=12% Similarity=0.067 Sum_probs=75.4
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|++.+ --|++++.+|-|+|+... +|-++ +...=+..+...|.++-..+.||+++....... ...-..+|.+...
T Consensus 44 ~~v~~-~hE~~A~~mAdgyar~tg--~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~G~~~~~-~~~~~~~q~~d~~ 119 (574)
T PRK06882 44 EHVLV-RHEQAAVHMADGYARSTG--KVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSN-LIGTDAFQECDML 119 (574)
T ss_pred eEEEe-ccHHHHHHHHHHHHHhhC--CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCcc-ccCCCcccccchh
Confidence 66666 899999999999998642 45443 455545556666666677899999986322221 1111247777777
Q ss_pred hHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 536 ASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 536 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
.+++.+=.. .....++.++..+++.|++ ...||++|-+|..
T Consensus 120 ~l~~~vtk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 120 GISRPVVKH-SFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred hhhhcccce-EEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 888865432 3445566666666665553 2469999999875
|
|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=84.80 E-value=6.1 Score=46.46 Aligned_cols=115 Identities=11% Similarity=0.036 Sum_probs=76.2
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
-|++.+ --|++++.+|-|.|+... +|-+ .++..=+..+...|.++-..+.||+++....... .+. ..+|.+.
T Consensus 53 i~~i~~-rhE~~A~~mAdgyar~tg--~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d 127 (570)
T PRK06725 53 LKHILT-RHEQAAIHAAEGYARASG--KVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIGK--DGFQEAD 127 (570)
T ss_pred CcEEEe-cCHHHHHHHHHHHHHHhC--CCeEEEECCCccHHHHHHHHHHHhhcCcCEEEEecCCCcccccC--CCCcccc
Confidence 466665 789999999999997542 4433 3455555555556666667799999887322222 232 2367677
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
...+++.+=.. .+...+++++..+++.|++. ..||+||-+|+.
T Consensus 128 ~~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 174 (570)
T PRK06725 128 VVGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKD 174 (570)
T ss_pred hhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccc
Confidence 77788876543 23456777787777776642 369999999875
|
|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=84.63 E-value=6.2 Score=46.37 Aligned_cols=117 Identities=11% Similarity=0.051 Sum_probs=77.3
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ --|++++.+|.|.|+... +|-| .++..-+..+...|.++-..+.||+++....... .+..-.++|.+.
T Consensus 48 i~~i~~-rhE~~A~~mAdgyar~tg--~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d 124 (569)
T PRK09259 48 IRYIGF-RHEQSAGNAAAAAGFLTQ--KPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELD 124 (569)
T ss_pred CCEEee-CCHHHHHHHHHHHHHHhC--CCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEEccCCcccccccCCCccccc
Confidence 366666 789999999999998742 4433 3566666677777777778899999887322211 111112467777
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~~~P~~irl~r~ 577 (719)
+..+++.+=.. .+...++.++...++.|+ ....|||||-+|+.
T Consensus 125 ~~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 171 (569)
T PRK09259 125 QLNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAK 171 (569)
T ss_pred hhhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHH
Confidence 77888876543 334456676666555544 33568999999874
|
|
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=84.24 E-value=6.4 Score=46.16 Aligned_cols=115 Identities=12% Similarity=0.084 Sum_probs=74.7
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=+++.+ ..|++++.+|-|.|+... +|-|+ ++..=+..+...|.++-..+.||+++....... .+. + .+|.+.
T Consensus 46 i~~v~~-~hE~~A~~~Adgyar~tg--~~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~d 120 (561)
T PRK06048 46 LRHILV-RHEQAAAHAADGYARATG--KVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMIGN-D-AFQEAD 120 (561)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhC--CCeEEEECCCCcHHHHHHHHHHHhhcCCCEEEEeccCCccccCC-C-Cccccc
Confidence 466666 899999999999997632 55443 455555566666777777899999986322221 232 2 355566
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
..++++.+=-.. +.-.++.++..+++.|++ ..+||+||-+|+.
T Consensus 121 ~~~~~~~itk~s-~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d 167 (561)
T PRK06048 121 ITGITMPITKHN-YLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKD 167 (561)
T ss_pred hhhhccCcceEE-EEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence 667777654322 234566676666666653 2469999999874
|
|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=83.93 E-value=7.8 Score=46.03 Aligned_cols=115 Identities=11% Similarity=0.088 Sum_probs=75.8
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=||+.+ --|+.++.+|.|.|+... +|-|+ +...=+.-+..-|.++-.-+.||+++....... .+. ..+|.+.
T Consensus 61 i~~i~~-rhE~~Aa~aA~gyar~tg--k~gv~~~t~GPG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~Qe~d 135 (616)
T PRK07418 61 LKHILV-RHEQGAAHAADGYARATG--KVGVCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAIGT--DAFQETD 135 (616)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhC--CCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccCC--CCccccc
Confidence 477777 899999999999997642 45443 455555566666777777899999987322221 132 2356666
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
...+++.+--. .....+++++..+++.|++ ...||++|-+|+.
T Consensus 136 ~~~~~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~D 182 (616)
T PRK07418 136 IFGITLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKD 182 (616)
T ss_pred HHHHhhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchh
Confidence 66777755422 2345677777766666653 2459999999874
|
|
| >cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Probab=83.84 E-value=6.2 Score=37.90 Aligned_cols=101 Identities=18% Similarity=0.046 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCC------------CCCChhh
Q 005021 469 MGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGP------------THQPIEH 534 (719)
Q Consensus 469 ~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~------------THq~~ed 534 (719)
.++.|.|+++..+ =++++++ -..|.. .+..+......++|+++++..++... ..+. ......|
T Consensus 51 ~~~~a~Gaa~a~~-~~~vv~~~GDG~~~~-~~~~l~ta~~~~~~~~~iv~nN~~~~-~~~~~~~~~~~~~~~~~~~~~~d 127 (168)
T cd00568 51 GLPAAIGAALAAP-DRPVVCIAGDGGFMM-TGQELATAVRYGLPVIVVVFNNGGYG-TIRMHQEAFYGGRVSGTDLSNPD 127 (168)
T ss_pred hHHHHHHHHHhCC-CCcEEEEEcCcHHhc-cHHHHHHHHHcCCCcEEEEEECCccH-HHHHHHHHHcCCCcccccCCCCC
Confidence 3445666666542 1455544 344544 34445555677999888886665431 1010 1111223
Q ss_pred hh-HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 535 LA-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 535 ia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
+. +.++. |+......+..|+..+++.+.. .++|++|..
T Consensus 128 ~~~~a~~~-G~~~~~v~~~~~l~~a~~~a~~-~~~p~~i~v 166 (168)
T cd00568 128 FAALAEAY-GAKGVRVEDPEDLEAALAEALA-AGGPALIEV 166 (168)
T ss_pred HHHHHHHC-CCeEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 22 34433 6667777889999999999985 689998864
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. |
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=83.61 E-value=5.8 Score=46.66 Aligned_cols=116 Identities=19% Similarity=0.116 Sum_probs=74.4
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCcc-CCCC------CC
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGL-GEDG------PT 528 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~-g~dG------~T 528 (719)
|++.+ --|++++.+|-|.|+... +|-+ .++.+=+..+..-|..+-..+.||+++........ +.++ ..
T Consensus 52 ~~V~~-rhE~~A~~~Adgyar~tg--k~gv~~~t~GPG~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~ 128 (569)
T PRK08327 52 EFVIC-PHEIVAISMAHGYALVTG--KPQAVMVHVDVGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHW 128 (569)
T ss_pred cEEec-CCHHHHHHHHHHHHHhhC--CCeEEEEecCHHHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCccc
Confidence 66766 779999999999998753 4433 35666555666666666678999999873322211 2110 12
Q ss_pred CCC-hhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 529 HQP-IEHLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 529 Hq~-~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
+|. +....+++.+=. ..+...+++++..++..|++ ...|||+|-+|..
T Consensus 129 ~qe~~d~~~~~~~vtk-~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 129 TQEMRDQGGLVREYVK-WDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPRE 181 (569)
T ss_pred chhhhhHHHHHhhhhh-hhcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHH
Confidence 344 566677776543 23455667777777666653 2478999999863
|
|
| >cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) | Back alignment and domain information |
|---|
Probab=82.93 E-value=7.3 Score=39.20 Aligned_cols=118 Identities=15% Similarity=0.137 Sum_probs=65.8
Q ss_pred CCCCCcccccc-c-cchHHHHHHHHHhcCCCCccEEEeh--hhhHHhHHHHHHHHhhhcCCEEEEEecCC-CccCC----
Q 005021 454 TPEERNVRFGV-R-EHGMGAICNGIALHSPGLIPYCATF--FVFTDYMRAAIRISALCEAGVIYVMTHDS-IGLGE---- 524 (719)
Q Consensus 454 ~~p~R~~d~GI-a-E~~~vg~AaGlA~~G~~~~Pv~~~y--~~F~~ra~dqir~~a~~~~pV~~v~~~~g-~g~g~---- 524 (719)
..|.+|++.+- . =...++.|.|.++... =+|++++- ..|+.-+ .-+......++||++++-+++ ++.-.
T Consensus 45 ~~~~~~~~~~~~GsmG~~lpaaiGa~la~p-~~~vv~i~GDG~f~m~~-~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~ 122 (202)
T cd02006 45 YKPRHWINCGQAGPLGWTVPAALGVAAADP-DRQVVALSGDYDFQFMI-EELAVGAQHRIPYIHVLVNNAYLGLIRQAQR 122 (202)
T ss_pred CCCCeEEccCCccchhhhhHHHHhHHhhCC-CCeEEEEEeChHhhccH-HHHHHHHHhCCCeEEEEEeCchHHHHHHHHH
Confidence 45788887642 1 1113445666555431 26777653 4454332 224445667999888775554 33210
Q ss_pred --CCC-----CCCC---------hhhhh-HHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEE
Q 005021 525 --DGP-----THQP---------IEHLA-SFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILAL 574 (719)
Q Consensus 525 --dG~-----THq~---------~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl 574 (719)
.+. .+.. .-|.+ +-+++ |+.-+.-.+..|+..+|+.++. ..++|++|-.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev 191 (202)
T cd02006 123 AFDMDYQVNLAFENINSSELGGYGVDHVKVAEGL-GCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEA 191 (202)
T ss_pred HhcCccccccccccccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEE
Confidence 000 0110 01222 22332 5677788899999999999984 2589998865
|
E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors. |
| >COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.89 E-value=2.1 Score=45.95 Aligned_cols=60 Identities=28% Similarity=0.235 Sum_probs=45.7
Q ss_pred cchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccc-ccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchh
Q 005021 201 LGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDG-CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE 279 (719)
Q Consensus 201 lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG-~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~ 279 (719)
-|-.++.|.|+.+|.+ +..||++-||| ++..|. -.+.++...+. |+++|+-||+. -++|+
T Consensus 72 ~gra~a~atGik~A~~--------------~l~Viv~gGDG~~~dIG~--~~l~h~~~Rn~-dit~iv~DNev--YgnTg 132 (294)
T COG1013 72 HGRAAAVATGIKLANP--------------ALSVIVIGGDGDAYDIGG--NHLIHALRRNH-DITYIVVDNEV--YGNTG 132 (294)
T ss_pred cCcchhhHHHHHHhcc--------------CCeEEEEecchhHhhhhh--HHHHHHHHcCC-CeEEEEECCee--cccCC
Confidence 4677889999999876 44799999999 666664 46888888885 69999999874 34443
|
|
| >cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Probab=82.83 E-value=32 Score=33.54 Aligned_cols=115 Identities=20% Similarity=0.121 Sum_probs=63.6
Q ss_pred CCCCCccccccccch---HHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCC-CccCC---
Q 005021 454 TPEERNVRFGVREHG---MGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDS-IGLGE--- 524 (719)
Q Consensus 454 ~~p~R~~d~GIaE~~---~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g-~g~g~--- 524 (719)
..|.+|+..+- .. .+..|.|.++.-. =++++++ -..|+.- ...+...+..++|+++++..++ ++.-.
T Consensus 38 ~~~~~~~~~~~--g~mG~~lp~aiGaala~~-~~~vv~i~GDG~f~~~-~~el~ta~~~~~p~~~iV~nN~~~~~~~~~~ 113 (178)
T cd02002 38 TRPGSYFTLRG--GGLGWGLPAAVGAALANP-DRKVVAIIGDGSFMYT-IQALWTAARYGLPVTVVILNNRGYGALRSFL 113 (178)
T ss_pred CCCCCeeccCC--ccccchHHHHHHHHhcCC-CCeEEEEEcCchhhcc-HHHHHHHHHhCCCeEEEEEcCccHHHHHHHH
Confidence 35788887533 22 2345666655421 1555554 3555432 2234445566999988876654 33200
Q ss_pred -----C--------CC-CCCChhhhh-HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 525 -----D--------GP-THQPIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 525 -----d--------G~-THq~~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
+ +. ......|++ +.+++ |+..+.-.+..|++.+++.+++ .++|++|-.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~vi~v 176 (178)
T cd02002 114 KRVGPEGPGENAPDGLDLLDPGIDFAAIAKAF-GVEAERVETPEELDEALREALA-EGGPALIEV 176 (178)
T ss_pred HHHcCCCcccccccccccCCCCCCHHHHHHHc-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0 00 001112222 33333 4555666779999999999996 689998853
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. |
| >cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Probab=82.77 E-value=12 Score=39.29 Aligned_cols=103 Identities=19% Similarity=0.227 Sum_probs=63.7
Q ss_pred HHHHHHHHHhc----CCCCccEEEe-hhhhHH-hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCC--CChhhhh-HH
Q 005021 469 MGAICNGIALH----SPGLIPYCAT-FFVFTD-YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTH--QPIEHLA-SF 538 (719)
Q Consensus 469 ~vg~AaGlA~~----G~~~~Pv~~~-y~~F~~-ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~TH--q~~edia-~l 538 (719)
.+++|.|+|+. +..-+.||.+ -..|.. ..++.+...+..++| +++|+...+ ++.+++++ ...+|++ .+
T Consensus 110 gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~--~~~~~~~~~~~~~~~~~~~~ 187 (255)
T cd02012 110 GLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNR--IQIDGPTDDILFTEDLAKKF 187 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCC--ccccCcHhhccCchhHHHHH
Confidence 34466776654 1112444433 555554 467777777778887 666664444 45566553 2334443 45
Q ss_pred cCCCCeEEEeeC--CHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 539 RAMPNILMLRPA--DGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 539 r~iPnl~V~~P~--d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
+++ |+.++.-. |..++..+++.+.+..++|++|..
T Consensus 188 ~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~ 224 (255)
T cd02012 188 EAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIA 224 (255)
T ss_pred HHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEE
Confidence 554 67777666 899999999988863378998875
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. |
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.73 E-value=7.4 Score=45.85 Aligned_cols=114 Identities=11% Similarity=0.008 Sum_probs=72.9
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ --|++++.+|-|.|+... +|-++ +...=+..+..-|.++-..+.||+++....... .+ .| .+|.+.+
T Consensus 43 ~~i~~-rhE~~A~~mAdgyar~tg--k~~v~~v~~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~~-~~-~~Qe~d~ 117 (578)
T PRK06546 43 EWVHV-RHEEAAAFAAAAEAQLTG--KLAVCAGSCGPGNLHLINGLYDAHRSGAPVLAIASHIPSAQIG-SG-FFQETHP 117 (578)
T ss_pred eEEEe-CcHHHHHHHHHhHHHhhC--CceEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCccccC-CC-CccccCh
Confidence 56665 689999999999999743 55443 234444455566666667899999987322111 12 23 3676777
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r~ 577 (719)
..+++.+=- ..+...+++++..+++.|++ ...||++|-+|..
T Consensus 118 ~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 118 DRLFVECSG-YCEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred hhhccccee-eEeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 778876533 33455566666665554432 2579999999874
|
|
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.52 E-value=9.3 Score=44.36 Aligned_cols=114 Identities=11% Similarity=0.028 Sum_probs=73.7
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ --|++++.+|-|.|+... +|-+ .++..=+..+...|.++-..+.||+++....... .+. ..||....
T Consensus 45 ~~i~~-rhE~~A~~mAdgYaR~tg--~~gv~~~t~GpG~~N~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 119 (518)
T PRK12474 45 RPVLC-LFEGVVTGAADGYGRIAG--KPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVEHLQY--DAPLTSDI 119 (518)
T ss_pred eEEEe-cchHHHHHHHHHHHHHhC--CCEEEEEccchhHhHhHHHHHHHhhcCCCEEEEeccCchhhcCC--CCccccCH
Confidence 67766 789999999999997632 5544 3455544445555555556789999887221111 121 23555666
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
.++++.+=- ..+...++.++..+++.|++ ...+|++|-+|+.
T Consensus 120 ~~~~~~vtk-~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~D 165 (518)
T PRK12474 120 DGFARPVSR-WVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPAD 165 (518)
T ss_pred HHhhhcccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 678886543 23456777877777776663 2458999999985
|
|
| >cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Probab=81.85 E-value=20 Score=35.99 Aligned_cols=98 Identities=11% Similarity=0.065 Sum_probs=58.7
Q ss_pred HHHHHHHHHhc----CCCCccEEEeh--hhhHH-hHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCC
Q 005021 469 MGAICNGIALH----SPGLIPYCATF--FVFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAM 541 (719)
Q Consensus 469 ~vg~AaGlA~~----G~~~~Pv~~~y--~~F~~-ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~i 541 (719)
.+++|.|+|+. |. =.+++++. ..|.. ..++.+..++..+.|+++++...+. +.+++|- ... ..++.
T Consensus 80 gl~~A~G~Ala~k~~~~-~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~--~~~~~~~-~~~--~~~~a- 152 (195)
T cd02007 80 SISAALGMAVARDLKGK-KRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEM--SISPNVG-TPG--NLFEE- 152 (195)
T ss_pred hHHHHHHHHHHHHHhCC-CCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCc--ccCCCCC-CHH--HHHHh-
Confidence 34556666654 21 13444443 44442 5677777776669999999855554 4455554 223 23443
Q ss_pred CCeEE---EeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 542 PNILM---LRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 542 Pnl~V---~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
-+..+ +-..|..++..+++.+.+ .++|++|..
T Consensus 153 ~G~~~~~~vdG~d~~~l~~a~~~a~~-~~~P~~I~~ 187 (195)
T cd02007 153 LGFRYIGPVDGHNIEALIKVLKEVKD-LKGPVLLHV 187 (195)
T ss_pred cCCCccceECCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 24333 455577888888888775 588999865
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). |
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=81.84 E-value=6.1 Score=46.46 Aligned_cols=115 Identities=12% Similarity=0.107 Sum_probs=74.7
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=|++.+ -.|++++.+|.|.|+. |+ ..+|. ++..=+..+...|.++-..+.||+++....... .+. | .+|.+.
T Consensus 43 i~~v~~-rhE~~A~~mAdgyar~tg~--~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~d 117 (572)
T PRK08979 43 IEHILV-RHEQAAVHMADGYARATGK--VGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIGN-D-AFQECD 117 (572)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCC--CeEEEECCCchHhHHHHHHHHHhhcCCCEEEEecCCCccccCC-C-CCcccc
Confidence 366666 8999999999999976 52 33333 455444455555666666799999987332222 232 2 367677
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
..++++.+=-. .....+++++...++.|++ ...||+||-+|+.
T Consensus 118 ~~~~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (572)
T PRK08979 118 MIGISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKD 164 (572)
T ss_pred hhHHhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHh
Confidence 77888876443 2344467777776666663 2469999999875
|
|
| >COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=81.75 E-value=4.5 Score=47.10 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=85.7
Q ss_pred CCCccccccccchHHHHHHHHHhcCCCCccEEEe-hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCC--------
Q 005021 456 EERNVRFGVREHGMGAICNGIALHSPGLIPYCAT-FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDG-------- 526 (719)
Q Consensus 456 p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~-y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG-------- 526 (719)
|=+-.|+-+.=..-+++|+|++..+. -++|..+ -++|.--...+|+++.+.+.++++++-..+...-..|
T Consensus 420 P~~~~d~t~~mGssig~a~g~~~~~~-k~~va~iGDsTF~HsGi~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~ 498 (640)
T COG4231 420 PLNTVDTTTMMGSSIGIAGGLSFAST-KKIVAVIGDSTFFHSGILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGV 498 (640)
T ss_pred CcchhhhhhhccchhhhccccccccC-CceEEEeccccccccCcHHHHHHHhcCCCeEEEEEeccchhccCCCCCCCccc
Confidence 33455555555556788999986653 2455544 6888888888899999999999888765554421111
Q ss_pred ------CCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 005021 527 ------PTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQK 578 (719)
Q Consensus 527 ------~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~ 578 (719)
.++..++.+.=-..+--+.+..|-|-.++...++.|++ .++|.+|.+.|..
T Consensus 499 ~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale-~~gpsViiak~~C 555 (640)
T COG4231 499 AAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALE-VPGPSVIIAKREC 555 (640)
T ss_pred ccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhc-CCCceEEEEcCcc
Confidence 23445666655556666788889999999999999996 7999999876543
|
|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=81.74 E-value=5.3 Score=47.16 Aligned_cols=114 Identities=12% Similarity=0.134 Sum_probs=72.4
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++.+ .-|++++.+|.|.|+... +|-+ .++..=+..+..-|.++-..+.||+++....... .+.+ .+|.++.
T Consensus 53 ~~i~~-rhE~~A~~~Adgyar~tg--~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~--~~q~~d~ 127 (585)
T CHL00099 53 KHILV-RHEQGAAHAADGYARSTG--KVGVCFATSGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIGTD--AFQEVDI 127 (585)
T ss_pred eEEEe-cCHHHHHHHHHHHHHhcC--CcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCCC--Cccccch
Confidence 56665 799999999999997632 4544 3455555556666666667899999987322211 2322 2566666
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
.++++.+=. -.....+++++..+++.|++ ...||+||-+|..
T Consensus 128 ~~~~~~~tk-~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 173 (585)
T CHL00099 128 FGITLPIVK-HSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKD 173 (585)
T ss_pred hhhhcCcee-EEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChh
Confidence 666665432 23344566666666666553 2458999999875
|
|
| >cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins | Back alignment and domain information |
|---|
Probab=81.31 E-value=34 Score=34.13 Aligned_cols=114 Identities=16% Similarity=0.086 Sum_probs=59.2
Q ss_pred CCCCccccccccchHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcC-CEEEEEecCCCccCCCC--CCC
Q 005021 455 PEERNVRFGVREHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEA-GVIYVMTHDSIGLGEDG--PTH 529 (719)
Q Consensus 455 ~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~-pV~~v~~~~g~g~g~dG--~TH 529 (719)
.|.+|+..|- =...++.|.|+++... =+|++++ -..|+.- ..-+...+..++ |+++++-+++. +|..+ .+.
T Consensus 40 ~~~~~~~~g~-mG~~lpaAiGaala~p-~~~Vv~i~GDG~f~m~-~~eL~ta~~~~l~~i~ivV~NN~~-yg~~~~~~~~ 115 (188)
T cd03371 40 HAQDFLTVGS-MGHASQIALGIALARP-DRKVVCIDGDGAALMH-MGGLATIGGLAPANLIHIVLNNGA-HDSVGGQPTV 115 (188)
T ss_pred ccCceeecCc-cccHHHHHHHHHHhCC-CCcEEEEeCCcHHHhh-ccHHHHHHHcCCCCcEEEEEeCch-hhccCCcCCC
Confidence 4588886521 1223456777665431 2566654 3445422 222444455565 55555534332 22211 111
Q ss_pred -CChhhhhHHcCCCCeE-EEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 530 -QPIEHLASFRAMPNIL-MLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 530 -q~~edia~lr~iPnl~-V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
....-..+.+++ |+. +....+.+|+..+++.+++ .++|++|..
T Consensus 116 ~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~lIev 160 (188)
T cd03371 116 SFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALA-ADGPAFIEV 160 (188)
T ss_pred CCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 111111233333 343 3455799999999999996 689998865
|
PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors. |
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=81.18 E-value=8.7 Score=45.34 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=66.3
Q ss_pred ccccccccchHHHHHHHHHhc----CCCCccEEEe-hhhhHH-hHHHHHHHHhhhcCCEEEEEecCCCccCCCCCC---C
Q 005021 459 NVRFGVREHGMGAICNGIALH----SPGLIPYCAT-FFVFTD-YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPT---H 529 (719)
Q Consensus 459 ~~d~GIaE~~~vg~AaGlA~~----G~~~~Pv~~~-y~~F~~-ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~T---H 529 (719)
++..|+.= +.+++|.|||+. |..-+.||.+ -.+|.. .+|+.+.+++.++.|+++++...+.+. ++++ .
T Consensus 109 ~~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN~~si--~~~~~~~~ 185 (581)
T PRK12315 109 FFTVGHTS-TSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQMSI--AENHGGLY 185 (581)
T ss_pred CcCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECCCCcC--CCCCchhh
Confidence 35666633 466778888764 3211233332 355555 789999888888999999997666653 3332 1
Q ss_pred CChh--------h-hhHHcCCCCeEEEeeCCHH---HHHHHHHHHHHcCCCcEEEEE
Q 005021 530 QPIE--------H-LASFRAMPNILMLRPADGN---ETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 530 q~~e--------d-ia~lr~iPnl~V~~P~d~~---e~~~~l~~a~~~~~~P~~irl 574 (719)
..+. + ...+.++ |+..+.|.|++ ++..+++.+.. .++|++|..
T Consensus 186 ~~l~~~~~~~~~~~~~~~~a~-G~~~~~v~DG~D~~~l~~a~~~a~~-~~gP~~i~~ 240 (581)
T PRK12315 186 KNLKELRDTNGQSENNLFKAM-GLDYRYVEDGNDIESLIEAFKEVKD-IDHPIVLHI 240 (581)
T ss_pred hhhhhhhhcccccHHHHHHhc-CCeEEEeeCCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 1111 1 1345665 66666665555 45555555543 578999875
|
|
| >PLN02790 transketolase | Back alignment and domain information |
|---|
Probab=80.14 E-value=10 Score=45.33 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=53.2
Q ss_pred hHHHHHHHHhhhcCC-EEEEEecCCCccCCCCCCC-CChhhhh-HHcCCCCeEEEee----CCHHHHHHHHHHHHHcCCC
Q 005021 496 YMRAAIRISALCEAG-VIYVMTHDSIGLGEDGPTH-QPIEHLA-SFRAMPNILMLRP----ADGNETAGAYKVAVANRKR 568 (719)
Q Consensus 496 ra~dqir~~a~~~~p-V~~v~~~~g~g~g~dG~TH-q~~edia-~lr~iPnl~V~~P----~d~~e~~~~l~~a~~~~~~ 568 (719)
.+|+.+..++.+++| ++++....+ +.-+|++. +..+++. .++++ |+.++.+ .|..++..+++.|....++
T Consensus 153 ~~~EAl~~A~~~~L~nli~i~d~N~--~~i~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~~l~~a~~~a~~~~~~ 229 (654)
T PLN02790 153 ISNEAASLAGHWGLGKLIVLYDDNH--ISIDGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYDEIRAAIKEAKAVTDK 229 (654)
T ss_pred HHHHHHHHHHHhCCCCEEEEEecCC--ccccCCcccccchhHHHHHHHc-CCeEEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence 678888888889987 676774444 45567665 3345543 67777 9999998 3566777777777643578
Q ss_pred cEEEEE
Q 005021 569 PSILAL 574 (719)
Q Consensus 569 P~~irl 574 (719)
|++|..
T Consensus 230 P~lI~~ 235 (654)
T PLN02790 230 PTLIKV 235 (654)
T ss_pred eEEEEE
Confidence 999875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 719 | ||||
| 1itz_A | 675 | Maize Transketolase In Complex With Tpp Length = 67 | 0.0 | ||
| 3hyl_A | 690 | Crystal Structure Of Transketolase From Bacillus An | 1e-169 | ||
| 1tka_A | 678 | Specificity Of Coenzyme Binding In Thiamin Diphosph | 1e-165 | ||
| 1trk_A | 680 | Refined Structure Of Transketolase From Saccharomyc | 1e-165 | ||
| 1r9j_A | 673 | Transketolase From Leishmania Mexicana Length = 673 | 1e-165 | ||
| 1ay0_A | 680 | Identification Of Catalytically Important Residues | 1e-164 | ||
| 1qgd_A | 662 | Transketolase From Escherichia Coli Length = 662 | 1e-161 | ||
| 2e6k_A | 651 | X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505 L | 1e-161 | ||
| 2r5n_A | 669 | Crystal Structure Of Transketolase From Escherichia | 1e-161 | ||
| 3upt_A | 711 | Crystal Structure Of A Transketolase From Burkholde | 1e-152 | ||
| 3uk1_A | 711 | Crystal Structure Of A Transketolase From Burkholde | 1e-151 | ||
| 3rim_A | 700 | Crystal Structure Of Mycobacterium Tuberculosis Tra | 1e-142 | ||
| 3kom_A | 663 | Crystal Structure Of Apo Transketolase From Francis | 1e-139 | ||
| 3m7i_A | 635 | Crystal Structure Of Transketolase In Complex With | 1e-115 | ||
| 3l84_A | 632 | High Resolution Crystal Structure Of Transketolase | 1e-115 | ||
| 3ooy_A | 616 | Crystal Structure Of Human Transketolase (Tkt) Leng | 3e-35 | ||
| 3mos_A | 616 | The Structure Of Human Transketolase Length = 616 | 5e-35 |
| >pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp Length = 675 | Back alignment and structure |
|
| >pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis Length = 690 | Back alignment and structure |
|
| >pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate Dependent Enzymes: Crystal Structures Of Yeast Transketolase In Complex With Analogs Of Thiamin Diphosphate Length = 678 | Back alignment and structure |
|
| >pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces Cerevisiae At 2.0 Angstroms Resolution Length = 680 | Back alignment and structure |
|
| >pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana Length = 673 | Back alignment and structure |
|
| >pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In Yeast Transketolase Length = 680 | Back alignment and structure |
|
| >pdb|1QGD|A Chain A, Transketolase From Escherichia Coli Length = 662 | Back alignment and structure |
|
| >pdb|2E6K|A Chain A, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505 Length = 651 | Back alignment and structure |
|
| >pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli In Noncovalent Complex With Acceptor Aldose Ribose 5-Phosphate Length = 669 | Back alignment and structure |
|
| >pdb|3UPT|A Chain A, Crystal Structure Of A Transketolase From Burkholderia Pseudomallei Bound To Tpp, Calcium And Ribose-5-Phosphate Length = 711 | Back alignment and structure |
|
| >pdb|3UK1|A Chain A, Crystal Structure Of A Transketolase From Burkholderia Thailandensis With An Oxidized Cysteinesulfonic Acid In The Active Site Length = 711 | Back alignment and structure |
|
| >pdb|3RIM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Transketolase (rv1449c) Length = 700 | Back alignment and structure |
|
| >pdb|3KOM|A Chain A, Crystal Structure Of Apo Transketolase From Francisella Tularensis Length = 663 | Back alignment and structure |
|
| >pdb|3M7I|A Chain A, Crystal Structure Of Transketolase In Complex With Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form) And Magnesium Ion Length = 635 | Back alignment and structure |
|
| >pdb|3L84|A Chain A, High Resolution Crystal Structure Of Transketolase From Campylobacter Jejuni Subsp. Jejuni Nctc 11168 Length = 632 | Back alignment and structure |
|
| >pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt) Length = 616 | Back alignment and structure |
|
| >pdb|3MOS|A Chain A, The Structure Of Human Transketolase Length = 616 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 719 | |||
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 0.0 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, t | 0.0 | |
| 3rim_A | 700 | Transketolase, TK; TPP, transferase; HET: TPP; 2.4 | 0.0 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 0.0 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 0.0 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 0.0 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 0.0 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta typ | 0.0 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 0.0 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 0.0 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 0.0 | |
| 3ahc_A | 845 | Phosphoketolase, xylulose 5-phosphate/fructose 6-p | 9e-96 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 1e-06 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 2e-05 | |
| 2qtc_A | 886 | Pyruvate dehydrogenase E1 component; thiamin dipho | 6e-04 |
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Length = 675 | Back alignment and structure |
|---|
Score = 1248 bits (3232), Expect = 0.0
Identities = 554/674 (82%), Positives = 595/674 (88%), Gaps = 30/674 (4%)
Query: 74 AAVETLE-TSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYN 132
AVETL+ + L+EKSVNTIRFLA+DAVEKANSGHPGLPMGCAPMGH+LYDEVMRYN
Sbjct: 1 GAVETLQGKAATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYN 60
Query: 133 PKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETP 192
PKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV+E+DLK FRQWGS+TPGHPENFETP
Sbjct: 61 PKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETP 120
Query: 193 GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEAS 252
G+EVTTGPLGQG+ANAVGLALAEKHLAAR+NKPD+EIVDHYTYVILGDGCQMEGIANEA
Sbjct: 121 GVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEAC 180
Query: 253 SLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV------------ 300
SLAGH GLGKLIAFYDDNHISIDGDTEIAFTE+V RFE LGWH IWV
Sbjct: 181 SLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRA 240
Query: 301 -----------------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHV 343
TTTIGFGSPNKANSYSVHGSALGAKEV+ATR+NLGWPY+ F V
Sbjct: 241 AIKEAKAVTDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQNLGWPYDTFFV 300
Query: 344 PEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYT 403
PEDVK HWSRH EGA LEA+WNAKFAEYEKKY ++AA KSI +G+LP GW ALP YT
Sbjct: 301 PEDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGELPTGWVDALPKYT 360
Query: 404 PESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFG 463
PESP +ATRNLSQ CLNALA +PGL+GGSADLASSNMTLLKMFGDFQKDT EERNVRFG
Sbjct: 361 PESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFG 420
Query: 464 VREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLG 523
VREHGMGAICNGIALHSPG +PYCATFFVFTDYMR A+RISAL EAGVIYVMTHDSIGLG
Sbjct: 421 VREHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLG 480
Query: 524 EDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA 583
EDGPTHQPIEHL SFRAMPNILMLRPADGNETAGAYKVAV NRKRPSILALSRQKLPHL
Sbjct: 481 EDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPSILALSRQKLPHLP 540
Query: 584 GTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWE 643
GTSI+GVEKG Y ISDNS+GNKPD+I++GTGSELEIAAKAA+ELRK GK VRVVSFVSWE
Sbjct: 541 GTSIEGVEKGGYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWE 600
Query: 644 LFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKE 703
LFDEQSD YKESVLPAAV+AR+SIEAGST GW+K VG++GKAIGID+FGASAPAG IYKE
Sbjct: 601 LFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKE 660
Query: 704 FGITAEAVITAAKE 717
+GIT E++I AAK
Sbjct: 661 YGITVESIIAAAKS 674
|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Length = 690 | Back alignment and structure |
|---|
Score = 1201 bits (3109), Expect = 0.0
Identities = 345/692 (49%), Positives = 453/692 (65%), Gaps = 37/692 (5%)
Query: 60 RRLSTSQASLPIRAAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAP 119
+ + + + + ++ + S+NTIR L++DA+EKANSGHPG+PMG AP
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSNAMSHSIEQLSINTIRTLSIDAIEKANSGHPGMPMGAAP 61
Query: 120 MGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWG 179
M + L+ + M++NP NP WFNRDRFVLSAGHG ML Y+LLHL+GYD V DDLKNFRQWG
Sbjct: 62 MAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYSLLHLSGYD-VTMDDLKNFRQWG 120
Query: 180 SKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILG 239
SKTPGHPE T G++ TTGPLGQG+A AVG+A+AE+HLAA+YN+ IVDHYTY I G
Sbjct: 121 SKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICG 180
Query: 240 DGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIW 299
DG MEG++ EASSLA HL LG+L+ YD N IS+DGD +F+E+V+ R++ GW VI
Sbjct: 181 DGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSFSESVEDRYKAYGWQVIR 240
Query: 300 V----------------------------TTTIGFGSPNKANSYSVHGSALGAKEVDATR 331
V TTIGFGSPNK+ + HGS LG +E T+
Sbjct: 241 VEDGNDIEAIAKAIEEAKADEKRPTLIEVRTTIGFGSPNKSGKSASHGSPLGVEETKLTK 300
Query: 332 KNLGWPYE-PFHVPEDVKKHWSRHVAE-GATLEAEWNAKFAEYEKKYPEEAAEFKSISSG 389
+ W E FHV E+V +++ + V + G T +AEWN EY + YPE A E ++ +G
Sbjct: 301 EAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMNG 360
Query: 390 QLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGD 449
LP GWE+ LPTY S A ATRN S +NA+A+++P GGSADLA SN T + D
Sbjct: 361 LLPEGWEQNLPTYELGSKA-ATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKD 419
Query: 450 FQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEA 509
F +D +N+ +GVRE MGA NGIALH GL Y TFFVF+DY+R AIR++AL +
Sbjct: 420 FTRDDYSGKNIWYGVREFAMGAAMNGIALHG-GLKTYGGTFFVFSDYLRPAIRLAALMQL 478
Query: 510 GVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRP 569
V YV THDSI +GEDGPTH+PIE LA+ RAMPN+ ++RPADGNE+ A+++A+ + +P
Sbjct: 479 PVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGNESVAAWRLALESTNKP 538
Query: 570 SILALSRQKLPHLAGT---SIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEE 626
+ L L+RQ LP L G + + V KGAY++S S DVIL+ TGSE+ +A +A +
Sbjct: 539 TALVLTRQDLPTLEGAKDDTYEKVAKGAYVVSA-SKKETADVILLATGSEVSLAVEAQKA 597
Query: 627 LRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAI 686
L G VVS S + F+ Q+ YKESVLP AV+ R +IE G+TFGW + VG +G +
Sbjct: 598 LAVDGVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFGWHRYVGLEGDVL 657
Query: 687 GIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718
GID FGASAP KI +E+G T E V+ KE+
Sbjct: 658 GIDTFGASAPGEKIMEEYGFTVENVVRKVKEM 689
|
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} Length = 700 | Back alignment and structure |
|---|
Score = 1189 bits (3078), Expect = 0.0
Identities = 295/692 (42%), Positives = 396/692 (57%), Gaps = 48/692 (6%)
Query: 73 AAAVETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYN 132
+A + +V+TIR LA DAV+K +GHPG M AP+ + L+ MR++
Sbjct: 8 SALTRPRHPDYWTEIDSAAVDTIRVLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHD 67
Query: 133 PKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETP 192
P + +W RDRFVLSAGH + Y L+L G+ ++ D+++ R WGSKTPGHPE TP
Sbjct: 68 PSDTHWLGRDRFVLSAGHSSLTLYIQLYLGGFG-LELSDIESLRTWGSKTPGHPEFRHTP 126
Query: 193 GIEVTTGPLGQGMANAVGLALAEKHLAARYN---KPDNEIVDHYTYVILGDGCQMEGIAN 249
G+E+TTGPLGQG+A+AVG+A+A ++ ++ +P DHY YVI DG EG+ +
Sbjct: 127 GVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTS 186
Query: 250 EASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV--------- 300
EASSLA LG LI FYD N ISI+ DT IA E+ R+ GWHV V
Sbjct: 187 EASSLAAVQQLGNLIVFYDRNQISIEDDTNIALCEDTAARYRAYGWHVQEVEGGENVVGI 246
Query: 301 -------------------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE-P 340
T IG+ +PN ++ HG+ALG EV A +K +G+ +
Sbjct: 247 EEAIANAQAVTDRPSFIALRTVIGYPAPNLMDTGKAHGAALGDDEVAAVKKIVGFDPDKT 306
Query: 341 FHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALP 400
F V EDV H VA G W +F + ++ PE A + + +LP GW+ LP
Sbjct: 307 FQVREDVLTHTRGLVARGKQAHERWQLEFDAWARREPERKALLDRLLAQKLPDGWDADLP 366
Query: 401 TYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE--- 457
+ P S A ATR S L+AL LP L GGSADLA SN T +K F +
Sbjct: 367 HWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEY 426
Query: 458 ------RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGV 511
R + FGVREH MGAI +GI LH Y TF F+DYMR A+R++AL +
Sbjct: 427 TAHWYGRTLHFGVREHAMGAILSGIVLHG-PTRAYGGTFLQFSDYMRPAVRLAALMDIDT 485
Query: 512 IYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVA--NRKRP 569
IYV THDSIGLGEDGPTHQPIEHL++ RA+P + ++RPAD NETA A++ +A N P
Sbjct: 486 IYVWTHDSIGLGEDGPTHQPIEHLSALRAIPRLSVVRPADANETAYAWRTILARRNGSGP 545
Query: 570 SILALSRQKLPHLAGTSIDGVEKGAYIISDNS---SGNKPDVILIGTGSELEIAAKAAEE 626
L L+RQ +P L GT +GV +G Y++SD G +PDVILI TGSE+++A A
Sbjct: 546 VGLILTRQGVPVLDGTDAEGVARGGYVLSDAGGLQPGEEPDVILIATGSEVQLAVAAQTL 605
Query: 627 LRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAI 686
L RVVS E F+ Q Y+++VLP VSARV++EAG W ++VG G+ +
Sbjct: 606 LADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCWHQLVGDTGEIV 665
Query: 687 GIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718
I+ +G SA +++E+G TAEAV AA+
Sbjct: 666 SIEHYGESADHKTLFREYGFTAEAVAAAAERA 697
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Length = 669 | Back alignment and structure |
|---|
Score = 1186 bits (3070), Expect = 0.0
Identities = 318/664 (47%), Positives = 415/664 (62%), Gaps = 40/664 (6%)
Query: 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSA 148
++ N IR L++DAV+KA SGHPG PMG A + +L+ + +++NP+NP W +RDRFVLS
Sbjct: 5 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSN 64
Query: 149 GHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANA 208
GHG ML Y+LLHL GYD + ++LKNFRQ SKTPGHPE T G+E TTGPLGQG+ANA
Sbjct: 65 GHGSMLIYSLLHLTGYD-LPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANA 123
Query: 209 VGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYD 268
VG+A+AEK LAA++N+P ++IVDHYTY +GDGC MEGI++E SLAG L LGKLIAFYD
Sbjct: 124 VGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYD 183
Query: 269 DNHISIDGDTEIAFTENVDKRFEGLGWHVIWV---------------------------- 300
DN ISIDG E FT++ RFE GWHVI
Sbjct: 184 DNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLMC 243
Query: 301 TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGAT 360
T IGFGSPNKA ++ HG+ LG E+ TR+ LGW Y PF +P ++ W G
Sbjct: 244 KTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQW-DAKEAGQA 302
Query: 361 LEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAE----ATRNLSQ 416
E+ WN KFA Y K YP+EAAEF G++P+ ++ + + A A+R SQ
Sbjct: 303 KESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQ 362
Query: 417 TCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGI 476
+ A LP LGGSADLA SN+TL +D + +GVRE GM AI NGI
Sbjct: 363 NAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINED-AAGNYIHYGVREFGMTAIANGI 421
Query: 477 ALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536
+LH G +PY +TF +F +Y R A+R++AL + + V THDSIGLGEDGPTHQP+E +A
Sbjct: 422 SLHG-GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVA 480
Query: 537 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGA 594
S R PN+ RP D E+A A+K V + P+ L LSRQ L T + + +G
Sbjct: 481 SLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGG 540
Query: 595 YIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKE 654
Y++ D +P++I I TGSE+E+A A E+L G RVVS S + FD+Q AY+E
Sbjct: 541 YVLKD--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRE 598
Query: 655 SVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITA 714
SVLP AV+ARV++EAG W K VG G +G+ FG SAPA +++EFG T + V+
Sbjct: 599 SVLPKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAK 658
Query: 715 AKEV 718
AKE+
Sbjct: 659 AKEL 662
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Length = 711 | Back alignment and structure |
|---|
Score = 1185 bits (3068), Expect = 0.0
Identities = 336/706 (47%), Positives = 423/706 (59%), Gaps = 45/706 (6%)
Query: 53 LRTPTSRRRLSTSQASLPIRAAAVETLE-TSTDAALVEKSVNTIRFLAVDAVEKANSGHP 111
+ T ++ + S +P + L+ T++ A N IR LA+DAV++ANSGHP
Sbjct: 9 MGTLEAQTQGPGSMPPVPRFLDSFSGLDMTTSSPASTTLMANAIRALAMDAVQQANSGHP 68
Query: 112 GLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDD 171
G+PMG A +G L+ +++NP NP+W +RDRFVLS GHG ML Y+LLHL GYD + ++
Sbjct: 69 GMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYD-LPIEE 127
Query: 172 LKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVD 231
LKNFRQ SKTPGHPE TPG+E TTGPLGQG+ANAVG+AL E LAA +N+ D +IVD
Sbjct: 128 LKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVD 187
Query: 232 HYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFE 291
H+TYV LGDGC MEGI++EA SLAG L L KLIA YDDN ISIDGD F ++ KRFE
Sbjct: 188 HHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWFHDDTPKRFE 247
Query: 292 GLGWHVIWV---------------------------TTTIGFGSPNKANSYSVHGSALGA 324
GW+VI T IG G+ KA + VHG+ LGA
Sbjct: 248 AYGWNVIPNVNGHDVDAIDAAIAKAKRSDKPSLICCKTRIGNGAATKAGGHDVHGAPLGA 307
Query: 325 KEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFK 384
E+ TR+ LGW + PF +P++V W G E +WNA FA+Y KYP EAAEF+
Sbjct: 308 DEIAKTREALGWTWAPFVIPQEVYAAW-DAKEAGKRSEDDWNAAFAQYRAKYPAEAAEFE 366
Query: 385 SISSGQLPAGWEKALPTYTP----ESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSN 440
+G LPA W ATR SQ + LA LP LLGGSADL SN
Sbjct: 367 RRMAGTLPADWAAKAAAIVAGANERGETVATRKASQQTIEGLAAVLPELLGGSADLTGSN 426
Query: 441 MTLLKMFGDFQKDTPEE-----RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTD 495
+T K + + ++ +GVRE GM A NG+ LH G P+ TF F+D
Sbjct: 427 LTNWKASKAVRANADGPGVQWGNHINYGVREFGMSAAINGLVLHG-GYKPFGGTFLTFSD 485
Query: 496 YMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNET 555
Y R A+R++AL + I+V THDSIGLGEDGPTHQ +EH+AS R +PN+ + RPAD ET
Sbjct: 486 YSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVET 545
Query: 556 AGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGAYIISD-NSSGNKPDVILIG 612
A A+ AV + PS L SRQ L A T + VEKG Y++ D + +ILI
Sbjct: 546 AVAWTYAV-AHQHPSCLIFSRQNLAFNARTDAQLANVEKGGYVLRDWDEEIVARKIILIA 604
Query: 613 TGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST 672
TGSE+E+A KA E L + G A RVVS S ++FD Q Y+E VLP V RV+IEAG T
Sbjct: 605 TGSEVELAMKAVEPLAQQGIAARVVSMPSSDVFDRQDAEYRERVLPHGV-RRVAIEAGVT 663
Query: 673 FGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718
W K VG +G +GID FG SAPAG ++K FG T E VI AK V
Sbjct: 664 DFWRKYVGLEGGVVGIDTFGESAPAGVLFKHFGFTVEHVIETAKAV 709
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Length = 680 | Back alignment and structure |
|---|
Score = 1176 bits (3044), Expect = 0.0
Identities = 331/673 (49%), Positives = 428/673 (63%), Gaps = 47/673 (6%)
Query: 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNR 141
+ + + +V+TIR LAVD V KANSGHPG P+G AP H+L+ + MR NP NP W NR
Sbjct: 2 TQFTDIDKLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINR 60
Query: 142 DRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPL 201
DRFVLS GH L Y++LHL GYD + +DLK FRQ GS+TPGHPE FE PG+EVTTGPL
Sbjct: 61 DRFVLSNGHAVALLYSMLHLTGYD-LSIEDLKQFRQLGSRTPGHPE-FELPGVEVTTGPL 118
Query: 202 GQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLG 261
GQG++NAVG+A+A+ +LAA YNKP + D+YTYV LGDGC EGI++EASSLAGHL LG
Sbjct: 119 GQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLG 178
Query: 262 KLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV--------------------- 300
LIA YDDN I+IDG T I+F E+V KR+E GW V++V
Sbjct: 179 NLIAIYDDNKITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSK 238
Query: 301 --------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE-PFHVPEDVKKHW 351
TTTIG+GS + A S+SVHG+ L A +V + G+ + F VP++V H+
Sbjct: 239 DKPTLIKMTTTIGYGSLH-AGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHY 297
Query: 352 SRHVAE-GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEA 410
+ + + G +WN F+EY+KK+PE AE SGQLPA WE LPTYT + A A
Sbjct: 298 QKTILKPGVEANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVA 357
Query: 411 TRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEE-----RNVRFGVR 465
TR LS+T L + LP L+GGSADL SN+T K DFQ + R +R+G+R
Sbjct: 358 TRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIR 417
Query: 466 EHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGED 525
EH MGAI NGI+ PY TF F Y A+R+SAL VI+V THDSIG+GED
Sbjct: 418 EHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGED 477
Query: 526 GPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT 585
GPTHQPIE LA FR++PNI + RPADGNE + AYK ++ ++ PSI+ALSRQ LP L G+
Sbjct: 478 GPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGS 537
Query: 586 SIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELF 645
SI+ KG Y++ D + PD+IL+ TGSE+ ++ +AA+ L RVVS + F
Sbjct: 538 SIESASKGGYVLQDVA---NPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTF 594
Query: 646 DEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFG 705
D+Q Y+ SVLP V +S+E +T W K ++ GIDRFGAS A +++K FG
Sbjct: 595 DKQPLEYRLSVLPDNV-PIMSVEVLATTCWGKYA---HQSFGIDRFGASGKAPEVFKFFG 650
Query: 706 ITAEAVITAAKEV 718
T E V A++
Sbjct: 651 FTPEGVAERAQKT 663
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Length = 651 | Back alignment and structure |
|---|
Score = 1175 bits (3042), Expect = 0.0
Identities = 326/664 (49%), Positives = 421/664 (63%), Gaps = 42/664 (6%)
Query: 82 STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNR 141
L SVN IRFLA+DAVEKA SGHPG+PMG AP+ ++L+ EVMR+NP +P W +R
Sbjct: 2 KETRDLETLSVNAIRFLAIDAVEKARSGHPGMPMGMAPLAYLLFREVMRHNPLDPDWPDR 61
Query: 142 DRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPL 201
DRFVLSAGHG ML YA+LHL GYD + ++LK+FRQWGSKTPGHPE TPG+EVTTGPL
Sbjct: 62 DRFVLSAGHGSMLLYAVLHLTGYD-LPLEELKSFRQWGSKTPGHPERGHTPGVEVTTGPL 120
Query: 202 GQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLG 261
GQG++ AVGLALAE+ LAA +N+P + +VDHYTYV+ DG MEG++ EA+SLAGH GL
Sbjct: 121 GQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLS 180
Query: 262 KLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV--------------------- 300
KLI F+DDN ISIDG T++AFTE+V R+ GW + V
Sbjct: 181 KLIVFWDDNRISIDGPTDLAFTEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKLDER 240
Query: 301 ------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRH 354
+ IGFGSP K +S HG LG + V+ATR+NLGWPY PF VPE+V +H
Sbjct: 241 PTLIAVRSHIGFGSP-KQDSAKAHGEPLGPEAVEATRRNLGWPYPPFVVPEEVYRHM-DM 298
Query: 355 VAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNL 414
+G + W Y + YP+ E G+LP E+ P++ ATR
Sbjct: 299 REKGRAWQEAWEKALEAYARAYPDLHQELMRRLRGELPPLPEE-PPSF---DKPIATRAA 354
Query: 415 SQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICN 474
S LN LA LP LLGGSADL SN T + DF + P R + FGVREH MGAI N
Sbjct: 355 SGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPLGRYLHFGVREHAMGAILN 414
Query: 475 GIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534
G+ LH G Y TF VF+DYMR AIR++AL ++V THDSI LGEDGPTHQP+EH
Sbjct: 415 GLNLHG-GYRAYGGTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTHQPVEH 473
Query: 535 LASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGA 594
L S RAMPN+ ++RPAD ET A+ VA+ ++ P+ L L+RQ +P L+ G+ +G
Sbjct: 474 LMSLRAMPNLFVIRPADAYETFYAWLVALRRKEGPTALVLTRQAVPLLSPEKARGLLRGG 533
Query: 595 YIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKE 654
Y++ D +P +L+ TGSE+ +A +A LR+ G VRVVS S+ELF Q +AY++
Sbjct: 534 YVLEDVE---EPQGVLVATGSEVHLALRAQALLREKGVRVRVVSLPSFELFAAQPEAYRK 590
Query: 655 SVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITA 714
VLP + V++EAG++ GWE+ K + +DRFGASAP ++Y+ G T E V A
Sbjct: 591 EVLPPGL-PVVAVEAGASLGWERYA---HKVVALDRFGASAPYPEVYERLGFTPERVAEA 646
Query: 715 AKEV 718
+
Sbjct: 647 FLSL 650
|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Length = 673 | Back alignment and structure |
|---|
Score = 1169 bits (3026), Expect = 0.0
Identities = 320/663 (48%), Positives = 421/663 (63%), Gaps = 46/663 (6%)
Query: 88 VEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLS 147
+EK N IR LA D V+ SGHPG PMG APM +L+ EVM+YN ++P W +RDRFV+S
Sbjct: 6 IEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMS 65
Query: 148 AGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMAN 207
GHGC LQYALLH+AGY+ + DDLK FRQ GS+TPGHPE F TPG+EVTTGPLGQG+AN
Sbjct: 66 NGHGCALQYALLHMAGYN-LTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIAN 124
Query: 208 AVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFY 267
AVGLA+AE HLAA +N+P IVDHYTYV GDGC MEG+ EA SLAGHL L KLI Y
Sbjct: 125 AVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIY 184
Query: 268 DDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV--------------------------- 300
D N+ISIDG T ++FTE +++ +G+HVI V
Sbjct: 185 DSNYISIDGSTSLSFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMI 244
Query: 301 --TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAE 357
TTTIGFGS +K + VHG+ LG +++ + G P + + V +DV+ + H+ +
Sbjct: 245 VQTTTIGFGS-SKQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDK 303
Query: 358 GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQT 417
+ + W A+Y +P E A F + G+LP+GWE LPT S A ATR S+
Sbjct: 304 CSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELPSGWEAKLPTN---SSAIATRKASEN 360
Query: 418 CLNALAKTLPGLLGGSADLASSNMTLLKM--FGDFQKDTPEERNVRFGVREHGMGAICNG 475
CL L +P L+GGSADL SN+T DF + E R +RFGVREH M AI NG
Sbjct: 361 CLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAILNG 420
Query: 476 IALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535
+ H G+IP+ TF F Y A+R++A+ VIYV THDSIG+GEDGPTHQP+E +
Sbjct: 421 LDAHD-GIIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELV 479
Query: 536 ASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAY 595
A+ RAMPN+ ++RP+D ET+GA+ VA+++ P++L LSRQ +G+SI+GV GAY
Sbjct: 480 AALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPTVLCLSRQNTEPQSGSSIEGVRHGAY 539
Query: 596 IISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKES 655
+ D ++++ +GSE+ +A AA+ L + VRVVS ELFD Q D Y+++
Sbjct: 540 SVVDVP---DLQLVIVASGSEVSLAVDAAKALSGELR-VRVVSMPCQELFDAQPDTYRQA 595
Query: 656 VLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAA 715
VLPA V VS+EA +FGWEK +G+ FGASAPAG +YK+FGIT E V+
Sbjct: 596 VLPAGV-PVVSVEAYVSFGWEKYS---HAHVGMSGFGASAPAGVLYKKFGITVEEVVRTG 651
Query: 716 KEV 718
+E+
Sbjct: 652 REL 654
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Length = 663 | Back alignment and structure |
|---|
Score = 1167 bits (3022), Expect = 0.0
Identities = 300/668 (44%), Positives = 401/668 (60%), Gaps = 44/668 (6%)
Query: 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFV 145
++ + N IRFL++DA KA SGHPG+PMG A + +L+ + +++NP NP+W NRDRFV
Sbjct: 4 SIPREFSNAIRFLSIDATLKAKSGHPGMPMGMADIATVLWTKFLKHNPNNPHWINRDRFV 63
Query: 146 LSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGM 205
LS GHG ML Y+LLHL GYD + +D+KNFRQ SKTPGHPE TPG+E TTGPLGQG+
Sbjct: 64 LSNGHGSMLLYSLLHLTGYD-LSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGV 122
Query: 206 ANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIA 265
ANAVG+AL EK L+ RYN PD +++DH+TYV LGDGC MEG+++EA SLAG LGL KL+A
Sbjct: 123 ANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVA 182
Query: 266 FYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV------------------------- 300
F+DDN+ISIDGDT+ F++N +RF GWHVI
Sbjct: 183 FWDDNNISIDGDTKGWFSDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQQQKPTL 242
Query: 301 ---TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAE 357
T IGFGSP KA + SVHGS L +E + K L W Y+ F +P+DV K+W +
Sbjct: 243 ICCKTVIGFGSPEKAGTASVHGSPLSDQERASAAKELNWDYQAFEIPQDVYKYW-DAREK 301
Query: 358 GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAE----ATRN 413
G LEA W + + K + EF+ + S +LP G E A+ Y + ATR
Sbjct: 302 GQALEANWQGQRNLF--KDSPKFDEFERVLSKELPVGLESAINDYIASQLSNPVKVATRK 359
Query: 414 LSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAIC 473
SQ L L K +P + GGSADL SN T + +GVRE GM AI
Sbjct: 360 ASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQEGANYLSYGVREFGMAAIM 419
Query: 474 NGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIE 533
NG++L+ G+ PY TF VF+DY R AIR+SAL + V++VM+HDSIGLGEDGPTHQPIE
Sbjct: 420 NGLSLYG-GIKPYGGTFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQPIE 478
Query: 534 HLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVE 591
H+ S R +PN+ + RPAD ET A+K AV ++ PS++ L+RQ L + T + +
Sbjct: 479 HVPSLRLIPNLSVWRPADTIETMIAWKEAVKSKDTPSVMVLTRQNLMPVVQTQHQVANIA 538
Query: 592 KGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDA 651
+G Y++ DN + ++ TGSE+E+A K A E K G + V S E+F Q+
Sbjct: 539 RGGYLVKDNP---DAKLTIVATGSEVELAVKVANEFEKKGIKLNVASIPCVEVFATQAHE 595
Query: 652 YKESVLPAAVSARVSIEAGSTFGWEKIVGSK-GKAIGIDRFGASAPAGKIYKEFGITAEA 710
YK++V+ + V +E W K + G+ GI FG SAPA ++K FG T E
Sbjct: 596 YKKTVIKDDI-PAVFVEMAQPDMWYKYMPKAGGEVKGIYSFGESAPAEDLFKRFGFTVEN 654
Query: 711 VITAAKEV 718
+ +
Sbjct: 655 ISNIVAKY 662
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Length = 632 | Back alignment and structure |
|---|
Score = 1111 bits (2877), Expect = 0.0
Identities = 262/661 (39%), Positives = 362/661 (54%), Gaps = 58/661 (8%)
Query: 84 DAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDR 143
+ ++++ NT+RFL+ D V+KANSGHPG P+G A + +L +++NPKNP W NRDR
Sbjct: 2 NIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY-HLKHNPKNPTWLNRDR 60
Query: 144 FVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQ 203
V S GH L Y+ LHL+GYD + +DLKNFRQ SKTPGHPE T G+E+ TGPLGQ
Sbjct: 61 LVFSGGHASALLYSFLHLSGYD-LSLEDLKNFRQLHSKTPGHPE-ISTLGVEIATGPLGQ 118
Query: 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKL 263
G+ANAVG A+A K ++DH Y + GDG EGI+ EA SLAG L
Sbjct: 119 GVANAVGFAMAAKKAQNLLGSD---LIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNF 175
Query: 264 IAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV----------------------- 300
I YD N+ISI+GD +AF ENV RFE G+ V+ +
Sbjct: 176 ILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYEEINKALEQAKKSTKPCL 235
Query: 301 ---TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE-PFHVPEDVKKHWSRHVA 356
TTI G+ S+ HG+ LG + + ++ G+ FH+P+ K + V
Sbjct: 236 IIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVE 295
Query: 357 EGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQ 416
G EA+W K + K E + P + A P + + ATR+ +
Sbjct: 296 LGDLEEAKWKDKLEKSAK--KELLERLLN------PDFNKIAYPDFKGKD--LATRDSNG 345
Query: 417 TCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGI 476
LN LAK L G LGGSADL SN T L GDF E +N+ FG+REH M AI N
Sbjct: 346 EILNVLAKNLEGFLGGSADLGPSNKTELHSMGDF----VEGKNIHFGIREHAMAAINNAF 401
Query: 477 ALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536
A + +P+ ATFF+F++Y++ A RI+AL + ++ THDSIG+GEDGPTHQPIE L+
Sbjct: 402 ARYG-IFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLS 460
Query: 537 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYI 596
+FRAMPN L RPADG E A+++A+ N PS LSRQKL L V+ GAY+
Sbjct: 461 TFRAMPNFLTFRPADGVENVKAWQIAL-NADIPSAFVLSRQKLKALNEPVFGDVKNGAYL 519
Query: 597 ISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESV 656
+ ++ + L+ +GSE+ + ++A EL K G A VVS +ELF++Q AY+E +
Sbjct: 520 LKES---KEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFEKQDKAYQERL 576
Query: 657 LPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 716
L V + +EA + K K GI+ FG S +++ FG + ++
Sbjct: 577 LKGEV---IGVEAAHSNELYKFC---HKVYGIESFGESGKDKDVFERFGFSVSKLVNFIL 630
Query: 717 E 717
Sbjct: 631 S 631
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616 | Back alignment and structure |
|---|
Score = 845 bits (2185), Expect = 0.0
Identities = 163/671 (24%), Positives = 262/671 (39%), Gaps = 89/671 (13%)
Query: 77 ETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNP 136
+ AL + + N +R ++ A A SGHP A + +L+ MRY ++P
Sbjct: 3 HKPDQQKLQAL-KDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDP 61
Query: 137 YWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEV 196
+ DRFVLS GH + YA+ AG+ + E +L N R+ S GHP + +V
Sbjct: 62 RNPHNDRFVLSKGHAAPILYAVWAEAGF--LAEAELLNLRKISSDLDGHPVP-KQAFTDV 118
Query: 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAG 256
TG LGQG+ A G+A K+ + + Y +LGDG EG EA + A
Sbjct: 119 ATGSLGQGLGAACGMAYTGKYF---------DKASYRVYCLLGDGELSEGSVWEAMAFAS 169
Query: 257 HLGLGKLIAFYDDNHISIDGDTEIAF-TENVDKRFEGLGWHVIWV--------------- 300
L L+A D N + + + KR E GWH I V
Sbjct: 170 IYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA 229
Query: 301 ---------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHW 351
T G G + S HG L + + +
Sbjct: 230 KHQPTAIIAKTFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYS--------------- 274
Query: 352 SRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEAT 411
+ +K + P+E A I++ ++P+ LP+Y AT
Sbjct: 275 ------------QIQSK-KKILATPPQEDAPSVDIANIRMPS-----LPSYKVGDKI-AT 315
Query: 412 RNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGA 471
R L L ++ D +S + F+K+ P+ R + + E M +
Sbjct: 316 RKAYGQALAKLGHASDRIIALDGDTKNSTFS-----EIFKKEHPD-RFIECYIAEQNMVS 369
Query: 472 ICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQP 531
I G A + +P+C+TF F IR++A+ E+ + +H + +GEDGP+
Sbjct: 370 IAVGCATRN-RTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMA 428
Query: 532 IEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVE 591
+E LA FR++P + P+DG T A ++A AN K + SR + + + D
Sbjct: 429 LEDLAMFRSVPTSTVFYPSDGVATEKAVELA-ANTKGICFIRTSRPENAIIYNNNEDFQV 487
Query: 592 KGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVS-----WELFD 646
A ++ V +IG G L A AAE L+K +RV+ + +L
Sbjct: 488 GQAKVVLK---SKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLIL 544
Query: 647 EQSDAYKESVLPA-AVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFG 705
+ + A K +L I + G + ++R S ++ K FG
Sbjct: 545 DSARATKGRILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVNRVPRSGKPAELLKMFG 604
Query: 706 ITAEAVITAAK 716
I +A+ A +
Sbjct: 605 IDRDAIAQAVR 615
|
| >3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* Length = 845 | Back alignment and structure |
|---|
Score = 314 bits (805), Expect = 9e-96
Identities = 110/799 (13%), Positives = 205/799 (25%), Gaps = 152/799 (19%)
Query: 46 KSTSSSTLRTPTSRRRLSTSQASLPIRAAAVETLETSTDAAL--------VEKSVNTIRF 97
+ P+ A+E ++ + +
Sbjct: 12 SGLVPRGSHMTNPVIGTPWQKLDRPVSEEAIEGMDKYWRVTNYMSIGQIYLRSNPLMKEP 71
Query: 98 LAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYA 157
D V+ GH G G L + R + F++ GHG +
Sbjct: 72 FTRDDVKHRLVGHWGTTPGLN----FLLAHINRLIADHQ---QNTVFIMGPGHGGPAGTS 124
Query: 158 LLHLAGYDSVQ-------EDDLKNFRQWGSKTPGHPE--NFETPGIEVTTGPLGQGMANA 208
++ G + E L+ F + S G P ETPG G LG +++A
Sbjct: 125 QSYVDGTYTEYYPNITKDEAGLQKFFRQFSYPGGIPSHFAPETPGSIHEGGELGYALSHA 184
Query: 209 VGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIAN---EASSLAGHLGLGKLIA 265
G + + I+GDG G +++ L G ++
Sbjct: 185 YGAVMNNP--------------SLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLP 230
Query: 266 FYDDNHISIDGDTEIAF--TENVDKRFEGLGWHVIWVT---------------------- 301
N I T +A E + F G+G+H
Sbjct: 231 ILHLNGYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETI 290
Query: 302 ---------------------------TTIGFGSPNK------ANSYSVHGSALGAKEVD 328
T G+ P S+ H L +
Sbjct: 291 FDEICDIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGKKTEGSWRAHQVPLASARDT 350
Query: 329 ATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISS 388
+ + + PE++ + + + A
Sbjct: 351 EEHFEVLKGWMESYKPEELFNADGSIKDDVTAFMPKGELRIGA-----NPNANGGVIRED 405
Query: 389 GQLPAGWEKALPTYTPESP----AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLL 444
+LP + + EA R L C + + D +SN
Sbjct: 406 LKLPELDQYEVTGVKEYGHGWGQVEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRLNA 465
Query: 445 K--------MFGDFQKDTPEERNVRFGVREHGMGAICNGIALH-----SPGLIPYCATFF 491
G E V V E C G G+ +F
Sbjct: 466 TYEVTDKQWDNGYLSGLVDEHMAVTGQVTEQLSEHQCEGFLEAYLLTGRHGIWSSYESFV 525
Query: 492 VFTDYM--------RAAIRISALCE--AGVIYVMTHDSIGLGEDGPTHQP---IEHLASF 538
D M A +R + + V +++ +G +HQ L +
Sbjct: 526 HVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSLLINK 585
Query: 539 RAMPNILM--LRPADGNETAGAYKVAVANRKRPSILALSRQKLPHL--AGTSIDGVEKGA 594
+ + D N + + + + + +Q P + +E GA
Sbjct: 586 TFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQPAPTWVTLDEARAELEAGA 645
Query: 595 YII---SDNSSGNKPDVILIGTGSELEIAA-KAAEELRKGGKAVRVVSFVSWELFDEQ-- 648
S+ + ++ V+L G A++ L K G +VV+ V +
Sbjct: 646 AEWKWASNAENNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSREN 705
Query: 649 -----SDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKA----IGIDRFGASAPAGK 699
+D + A + + + I +G G++
Sbjct: 706 NDEALTDEEFTELFTADKPVLFAYHSYAQDVRGLIYDRPNHDNFHVVGYKEQGSTTTPFD 765
Query: 700 IYKEFGITAEAVITAAKEV 718
+ + + A+ AA ++
Sbjct: 766 MVRVNDMDRYALQAAALKL 784
|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Length = 621 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 1e-06
Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 37/215 (17%)
Query: 521 GL-GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKL 579
G+ G DG THQ L+ R +P ++++ P+D NE PS + R
Sbjct: 422 GIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNA 481
Query: 580 PHLAGTSIDGVEKG-AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVS 638
+ T ++ + G + + ++ G+ + AAK AE L +V
Sbjct: 482 VGVELTPLEKLPIGKGIVKRRGE-----KLAILNFGTLMPEAAKVAESLN-----ATLVD 531
Query: 639 --FVS---WELFDEQSDAYKESVLPAAVSARVSIEAGSTFG----------WEKIVGSKG 683
FV L E + +++ A V++E + G
Sbjct: 532 MRFVKPLDEALILEMAASHE---------ALVTVEENAIMGGAGSGVNEVLMAHRKPVPV 582
Query: 684 KAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKE 717
IG+ D F ++ E G+ A + K
Sbjct: 583 LNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKA 617
|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Length = 629 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 2e-05
Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 37/215 (17%)
Query: 521 GL-GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKL 579
G+ G DG TH + L+ R++P + + P D E G K A + P + R
Sbjct: 425 GIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTH-DGPFAIRYPRGNT 483
Query: 580 PHLAGTSIDGVEKG-AYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVS 638
+ + ++ G + DV+++ G L+ A KAAE+L G VV+
Sbjct: 484 AQVPAGTWPDLKWGEWERLKGGD-----DVVILAGGKALDYALKAAEDLPGVG----VVN 534
Query: 639 --FVS---WELFDEQSDAYKESVLPAAVSARVSIEAGSTFG----------WEKIVGSKG 683
FV E+ E + A +++E + G +
Sbjct: 535 ARFVKPLDEEMLREVGGRAR---------ALITVEDNTVVGGFGGAVLEALNSMNLHPTV 585
Query: 684 KAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKE 717
+ +GI D F A A ++ GI A A+ T E
Sbjct: 586 RVLGIPDEFQEHATAESVHARAGIDAPAIRTVLAE 620
|
| >2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* Length = 886 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 59/239 (24%), Positives = 92/239 (38%), Gaps = 41/239 (17%)
Query: 84 DAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHI--------LYDEVMRYNPKN 135
+ L + + IR+ A+ V +A+ L G GH+ +YD N
Sbjct: 74 NLELERRIRSAIRWNAIMTVLRASKKDLEL--G----GHMASFQSSATIYDVCF-----N 122
Query: 136 PYWFNRDR-----FVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQ--WGSKTPGHPEN 188
++ R+ V GH YA L G + ++ L NFRQ G+ +P
Sbjct: 123 HFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLT--QEQLDNFRQEVHGNGLSSYPHP 180
Query: 189 FETPGI-EVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI 247
P + T +G G A+ A K+L R K + Y LGDG E
Sbjct: 181 KLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTS---KQTVYAFLGDGEMDEPE 237
Query: 248 ANEASSLAGHLGLGKLIAFYDDNHISID----GDTEIAFTENVDKRFEGLGW---HVIW 299
+ A ++A L L+ + N +D G+ +I ++ FEG GW V+W
Sbjct: 238 SKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKII--NELEGIFEGAGWNVIKVMW 294
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 719 | |||
| 3rim_A | 700 | Transketolase, TK; TPP, transferase; HET: TPP; 2.4 | 100.0 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, t | 100.0 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 100.0 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 100.0 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 100.0 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 100.0 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta typ | 100.0 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 100.0 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 100.0 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 100.0 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 100.0 | |
| 2qtc_A | 886 | Pyruvate dehydrogenase E1 component; thiamin dipho | 100.0 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 100.0 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 100.0 | |
| 3ahc_A | 845 | Phosphoketolase, xylulose 5-phosphate/fructose 6-p | 100.0 | |
| 2jgd_A | 933 | 2-oxoglutarate dehydrogenase E1 component; flavopr | 100.0 | |
| 2yic_A | 868 | 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 | 100.0 | |
| 2bfd_B | 342 | 2-oxoisovalerate dehydrogenase beta subunit; oxido | 100.0 | |
| 1ik6_A | 369 | Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o | 100.0 | |
| 2ozl_B | 341 | PDHE1-B, pyruvate dehydrogenase E1 component subun | 100.0 | |
| 1w85_B | 324 | Pyruvate dehydrogenase E1 component, beta subunit; | 100.0 | |
| 1umd_B | 324 | E1-beta, 2-OXO acid dehydrogenase beta subunit; al | 100.0 | |
| 2xt6_A | 1113 | 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET | 100.0 | |
| 1qs0_B | 338 | 2-oxoisovalerate dehydrogenase beta-subunit; heter | 100.0 | |
| 1umd_A | 367 | E1-alpha, 2-OXO acid dehydrogenase alpha subunit; | 99.92 | |
| 2bfd_A | 400 | 2-oxoisovalerate dehydrogenase alpha subunit; oxid | 99.77 | |
| 1w85_A | 368 | Pyruvate dehydrogenase E1 component, alpha subunit | 99.74 | |
| 1yd7_A | 395 | 2-keto acid:ferredoxin oxidoreductase subunit alph | 99.71 | |
| 2ozl_A | 365 | PDHE1-A type I, pyruvate dehydrogenase E1 componen | 99.69 | |
| 1qs0_A | 407 | 2-oxoisovalerate dehydrogenase alpha-subunit; hete | 99.67 | |
| 2c42_A | 1231 | Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, | 99.27 | |
| 3ju3_A | 118 | Probable 2-oxoacid ferredoxin oxidoreductase, ALP; | 98.94 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 98.64 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 98.59 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 98.58 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 98.57 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 98.54 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 98.52 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 98.51 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 98.49 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 98.48 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 98.48 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 98.47 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 98.44 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 98.43 | |
| 1ovm_A | 552 | Indole-3-pyruvate decarboxylase; thiamine diphosph | 98.43 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 98.39 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 98.37 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 98.27 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 98.18 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 98.12 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 98.11 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 97.71 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 97.47 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 93.21 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 91.44 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 91.36 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 91.34 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 90.42 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 90.34 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 89.58 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 89.31 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 88.67 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 88.36 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 88.01 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 87.27 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 87.25 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 87.09 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 86.28 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 86.18 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 86.02 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 85.7 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 85.41 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 85.22 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 80.23 |
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-126 Score=1107.88 Aligned_cols=629 Identities=46% Similarity=0.783 Sum_probs=575.8
Q ss_pred HHHHHHH-HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCC
Q 005021 86 ALVEKSV-NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGY 164 (719)
Q Consensus 86 ~~l~~la-~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~ 164 (719)
+.|+++| ++||.++++|+.++++||+|++||++||+++||+.+||+||+||+|++|||||||+||++|++|++|+|+||
T Consensus 20 ~~l~~~a~~~iR~~~~~~v~~a~sGH~g~~ls~a~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~ 99 (700)
T 3rim_A 20 TEIDSAAVDTIRVLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLYIQLYLGGF 99 (700)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSTTCHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCCCCCCeEEECCCchhHHHHHHHHHhCC
Confidence 3489998 899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCC---ccCCcEEEEEEccc
Q 005021 165 DSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDN---EIVDHYTYVILGDG 241 (719)
Q Consensus 165 ~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~---~~~~~~v~~iiGDG 241 (719)
. ++.++|++|||++|.++|||++.++||++++||++|||++.|+|||+|.|+++++||++++ +..+++|||++|||
T Consensus 100 ~-~~~~~l~~fr~~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG 178 (700)
T 3rim_A 100 G-LELSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDG 178 (700)
T ss_dssp S-CCHHHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHH
T ss_pred C-CCHHHHHHhhcCCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCc
Confidence 2 4999999999999999999998889999999999999999999999999999999999876 56789999999999
Q ss_pred ccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE---------------------
Q 005021 242 CQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV--------------------- 300 (719)
Q Consensus 242 ~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v--------------------- 300 (719)
+++||++|||+|+|++++|+|||+|||||+++|+++++....+++.++|++|||++++|
T Consensus 179 ~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~~~~ 258 (700)
T 3rim_A 179 DIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIALCEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQAVTD 258 (700)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHCCS
T ss_pred ccccChHHHHHHHHHHcCCCcEEEEEECCCcccccchhhccchhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999998777889999999999999987
Q ss_pred -------eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCC-CCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhh
Q 005021 301 -------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE-PFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEY 372 (719)
Q Consensus 301 -------~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~-~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~ 372 (719)
+|+||+|.+.+++...||+.++++++++.++++++|+.+ +|.+|++++.+|+....+|+..+.+|++.+++|
T Consensus 259 ~P~lI~~~T~kG~G~~~~e~~~~~Hg~~~~~e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~~~~~g~~~~~~w~~~~~~~ 338 (700)
T 3rim_A 259 RPSFIALRTVIGYPAPNLMDTGKAHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARGKQAHERWQLEFDAW 338 (700)
T ss_dssp SCEEEEEECCTTTTCTTTTTSHHHHHSCCCHHHHHHHHHHHTCCTTCSSCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEeeecCCccCCCccccCCCCCHHHHHHHHHHcCCCcccCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 689999999888888999999999999999999999655 599999999999877777888899999999999
Q ss_pred hhcCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcc
Q 005021 373 EKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQK 452 (719)
Q Consensus 373 ~~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~ 452 (719)
++.+|+...++.+..++++|..|....|+|..+.++.+||++++++|.+++++||+++++++|++.|+++.++++..|++
T Consensus 339 ~~~~p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~ 418 (700)
T 3rim_A 339 ARREPERKALLDRLLAQKLPDGWDADLPHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGP 418 (700)
T ss_dssp HHHCHHHHHHHHHHHTTCCCTTTTSSCCCCCTTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESC
T ss_pred HhhChHHHHHHHHHhccCCCcchhhhcccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcc
Confidence 99999998888888888889888777788865556789999999999999999999999999998777665556677876
Q ss_pred cCC------C----CCccccccccchHHHHHHHHHhc-CCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc
Q 005021 453 DTP------E----ERNVRFGVREHGMGAICNGIALH-SPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG 521 (719)
Q Consensus 453 ~~~------p----~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g 521 (719)
+| | +||||+||+||+|+++|+|||++ | ++||+.+|+.|++|+++|||+.|++++||+|+++|+|+|
T Consensus 419 -~~~~~~~~p~~~~~R~id~GIaE~~mv~~A~GlA~~gG--~~Pv~~tF~~F~d~~~~~ir~~al~~lpvv~v~thdg~g 495 (700)
T 3rim_A 419 -PSISTKEYTAHWYGRTLHFGVREHAMGAILSGIVLHGP--TRAYGGTFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIG 495 (700)
T ss_dssp -GGGCCSSCCEETTCCEEECCSCHHHHHHHHHHHHHHSS--CEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG
T ss_pred -cccccccCCcccCCceeecCccHHHHHHHHHHHHHcCC--CEEEEEecHHHHHHHHHHHHHhcCCCCCEEEEEeCCCcc
Confidence 67 8 59999999999999999999999 6 799999999999999999999999999999999999999
Q ss_pred cCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCC--CcEEEEEcCCCCCCCCCCCccccccccEEEec
Q 005021 522 LGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRK--RPSILALSRQKLPHLAGTSIDGVEKGAYIISD 599 (719)
Q Consensus 522 ~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~--~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~ 599 (719)
+|+||+|||++||+++||+||||+|++|+|++|++.+|++|++..+ +|++||++|+.+|.++.++.+.+++|++++ +
T Consensus 496 vG~dG~THq~ied~a~lr~iPnl~V~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~~~~~~~~~~~~~~~G~~vl-r 574 (700)
T 3rim_A 496 LGEDGPTHQPIEHLSALRAIPRLSVVRPADANETAYAWRTILARRNGSGPVGLILTRQGVPVLDGTDAEGVARGGYVL-S 574 (700)
T ss_dssp GCTTCTTTSCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSEECCCTTCCHHHHHHSCEEE-E
T ss_pred cCCCCCccCChhHHHHHhcCCCCEEEeCCCHHHHHHHHHHHHHccCCCCCEEEEeccccCCCcCcccccccCCCcEEE-e
Confidence 9999999999999999999999999999999999999999997545 699999999998876654335688999754 5
Q ss_pred CCC----CCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCc
Q 005021 600 NSS----GNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGW 675 (719)
Q Consensus 600 ~~~----~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~ 675 (719)
++. ++.+||+||++|+||++|++||++|+++||+++|||++|++|||.+...|+++|++...+.+|++|++...||
T Consensus 575 ~g~~~~~~~~~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~~~vtvEe~~~~G~ 654 (700)
T 3rim_A 575 DAGGLQPGEEPDVILIATGSEVQLAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCW 654 (700)
T ss_dssp CCSCCCTTCCCSEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCTTCCCEEEECSSCSGGG
T ss_pred cCCccccCCCCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEEeccccccCcccHHHHHHHhcccceEEEEEeCCCchhH
Confidence 420 0013999999999999999999999999999999999999999998777778888753444799999999999
Q ss_pred hhhhcCCceEEeeCcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 676 EKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 676 ~~~~~~~~~~ig~d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
.++++.....+|+|+|+.||+.++|+++||||+++|+++|+++|
T Consensus 655 ~~~~~~~~~~igid~Fg~sg~~~~l~~~~Glt~e~I~~~i~~~l 698 (700)
T 3rim_A 655 HQLVGDTGEIVSIEHYGESADHKTLFREYGFTAEAVAAAAERAL 698 (700)
T ss_dssp HHHHCTTCEEECCCSCCCSSCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEccCcCcCcCCHHHHHHHhCcCHHHHHHHHHHHh
Confidence 99887777889999999999999999999999999999999864
|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-123 Score=1079.34 Aligned_cols=627 Identities=54% Similarity=0.929 Sum_probs=573.2
Q ss_pred HHHHH-HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCC
Q 005021 88 VEKSV-NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS 166 (719)
Q Consensus 88 l~~la-~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~ 166 (719)
|+++| ++||.++++|+.++++||+|++||++||+++||+.+|+|||+||+|++|||||||+||++|++|++|+|+||.
T Consensus 29 l~~~a~~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~- 107 (690)
T 3m49_A 29 IEQLSINTIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYSLLHLSGYD- 107 (690)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTSS-
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEECCccHHHHHHHHHHHHCCC-
Confidence 88888 8999999999999999999999999999999999999999999999999999999999999999999999982
Q ss_pred CChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChh
Q 005021 167 VQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEG 246 (719)
Q Consensus 167 ~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG 246 (719)
++.++|++|||++|+++|||++.++||++++||++|+|++.|+|+|+|.++++.+||++++++.+++|||++|||+++||
T Consensus 108 ~~~~~l~~~rq~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG 187 (690)
T 3m49_A 108 VTMDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEG 187 (690)
T ss_dssp CCHHHHTTTTCTTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSH
T ss_pred CCHHHHHhhccCCCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhc
Confidence 48999999999999999999998999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE--------------------------
Q 005021 247 IANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV-------------------------- 300 (719)
Q Consensus 247 ~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v-------------------------- 300 (719)
++|||+++|++++|+|||+|+|||+|+|++++.....+++.++|++|||+++.|
T Consensus 188 ~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~~~~P~lI 267 (690)
T 3m49_A 188 VSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSFSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLI 267 (690)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEECSBCSSSBGGGTCCCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHHHHCCSSCEEE
T ss_pred cHHHHHHHHHHhCCCeEEEEEECCCeecccchhhccchhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 999999999999999999999999999999998777789999999999999988
Q ss_pred --eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCC-CCCCcHHHHHHHHH-HhhcchhHHHHHHHHHhhhhhcC
Q 005021 301 --TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYE-PFHVPEDVKKHWSR-HVAEGATLEAEWNAKFAEYEKKY 376 (719)
Q Consensus 301 --~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~-~~~~~~~v~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~ 376 (719)
+|+||+|.+.+++...||+.+++.++++.++++++|+.+ +|++|++++.+|+. ...+|...+..|++.+.+|..++
T Consensus 268 ~v~T~kG~G~~~~~~~~~~Hg~~~~~e~~~~~~~~l~~~~~~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 347 (690)
T 3m49_A 268 EVRTTIGFGSPNKSGKSASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAY 347 (690)
T ss_dssp EEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHHHTTCCCCSTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEeecccccCcccCcccccCCCCCHHHHHHHHHHhCCCCCCCCcCChhHHHHHHHHHhhhcchhhHHHHHHHHHHHHhC
Confidence 689999998888889999999999999999999999666 89999998889876 45667777889999999999889
Q ss_pred chhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCC
Q 005021 377 PEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPE 456 (719)
Q Consensus 377 p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p 456 (719)
|+.+.++.+.+.+++|..|....|+|..+ ++.+||++++++|.++++++|+++++++|+++|+++.+++...|+++.+|
T Consensus 348 ~~~a~~~~~~~~~~lp~~~~~~~~~~~~~-~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~ 426 (690)
T 3m49_A 348 PELANELQAAMNGLLPEGWEQNLPTYELG-SKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYS 426 (690)
T ss_dssp HHHHHHHHHHHTTCCCTTGGGGCCCCCTT-CEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTT
T ss_pred HHHHHHHHHHhcccCchhhhhhccccccc-cchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCC
Confidence 99888888888889998898888888653 57899999999999999999999999999988877766666778775579
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
+||||+||+||+|+++|+|||++ | ++||+.||+.|++++..|||+.|++++||+|+++|+|+++|+||+|||++||+
T Consensus 427 ~R~~d~GIaE~~mv~~A~GlA~~gG--~~P~~~tf~~Fs~f~~~air~~al~~lpVv~v~~~~gigvG~dG~THq~ied~ 504 (690)
T 3m49_A 427 GKNIWYGVREFAMGAAMNGIALHGG--LKTYGGTFFVFSDYLRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQL 504 (690)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSS--CEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGCCSSHH
T ss_pred CceEEcCchHHHHHHHHHHHHHcCC--CEEEEEecHHHHHHHHHHHHHHHhcCCCcEEEEECCCcCCCCCCCccCCHHHH
Confidence 99999999999999999999999 6 79999999999999999999999999999999999999999999999999999
Q ss_pred hHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCC---ccccccccEEEecCCCCCCCCEEEEE
Q 005021 536 ASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS---IDGVEKGAYIISDNSSGNKPDVILIG 612 (719)
Q Consensus 536 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~---~~~~~~G~~~i~~~~~~~g~dvtIva 612 (719)
++||+||||+|++|+|++|++.+|++|++..++|++||++|+.+|.++.+. .+.+++|+|++++.. ++.+|++||+
T Consensus 505 a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~~~~~Pv~ir~~R~~~p~~~~~~~~~~~~~~~G~~vlr~g~-~g~~dvtiia 583 (690)
T 3m49_A 505 AALRAMPNVSVIRPADGNESVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKVAKGAYVVSASK-KETADVILLA 583 (690)
T ss_dssp HHHHTSTTCEEECCSSHHHHHHHHHHHHHCSSSCEEEECCSSEEECCHHHHTTHHHHHHTSCEEEECCS-SSSCSEEEEE
T ss_pred HHHhcCCCCEEEeeCCHHHHHHHHHHHHHcCCCCEEEEeecccCCCCCccccccccccCCCeEEEEecC-CCCCCEEEEE
Confidence 999999999999999999999999999975589999999999888654322 245788987654420 0024999999
Q ss_pred eCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCC
Q 005021 613 TGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFG 692 (719)
Q Consensus 613 ~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~ 692 (719)
+|+||+.|++||++|+++||+++|||++|++|||.+...++++|++...+.+|++|++...||.++++.....+|+|.|+
T Consensus 584 ~G~~v~~Al~Aa~~L~~~GI~~~Vid~~~i~p~D~~d~~~~~~v~~~~~~~~v~vEe~~~~G~~~~~~~~~~~igid~Fg 663 (690)
T 3m49_A 584 TGSEVSLAVEAQKALAVDGVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFGWHRYVGLEGDVLGIDTFG 663 (690)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTHHHHTTTCEEECCCSCC
T ss_pred echHHHHHHHHHHHHHhcCCCeEEEecccCCcCccccHHHHHHHhhccCCeEEEEECCchhhHHHHhccCCCEEccCcCc
Confidence 99999999999999999999999999999999998766677888853333469999999999999987666789999999
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 693 ASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 693 ~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
.+|+.++|+++||||+++|+++|+++|
T Consensus 664 ~sg~~~~l~~~~Glt~e~I~~~i~~~l 690 (690)
T 3m49_A 664 ASAPGEKIMEEYGFTVENVVRKVKEML 690 (690)
T ss_dssp CSSCHHHHHHHTTCSHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHhC
Confidence 999999999999999999999999875
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-123 Score=1086.55 Aligned_cols=621 Identities=53% Similarity=0.862 Sum_probs=553.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCC
Q 005021 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQ 168 (719)
Q Consensus 89 ~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~ 168 (719)
+++|++||.++++++.++++||+|++||++||+++||+.+|+|||+||+|++|||||||+||++|++|++++++||. ++
T Consensus 46 ~~~a~~iR~~~i~~v~~a~~GH~g~~l~~aei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~-~~ 124 (711)
T 3uk1_A 46 TLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYD-LP 124 (711)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHHTCCCCTTCTTCTTCCEEEECSGGGHHHHHHHHHHHTCS-CC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHhhhEeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCCC-CC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999982 38
Q ss_pred hhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHH
Q 005021 169 EDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIA 248 (719)
Q Consensus 169 ~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~ 248 (719)
.++|++|||++|.++|||+...+||+++++|++|+|++.|+|+|+|.++++.+||++++++.+++|||++|||+++||++
T Consensus 125 ~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~ 204 (711)
T 3uk1_A 125 IEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGIS 204 (711)
T ss_dssp HHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHhhccccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccH
Confidence 99999999999999999998789999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEE-E--------------------------e
Q 005021 249 NEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIW-V--------------------------T 301 (719)
Q Consensus 249 ~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~-v--------------------------~ 301 (719)
|||+++|++++|+|||+|+|||+++|+++++....+++.++|++|||++++ | +
T Consensus 205 ~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~~~~P~lI~v~ 284 (711)
T 3uk1_A 205 HEACSLAGTLKLNKLIALYDDNGISIDGDVVNWFHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKRSDKPSLICCK 284 (711)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHTTCSSCEEEEEE
T ss_pred HHHHHHHHHhCCCcEEEEEECCCcccccchhhhcCCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEEc
Confidence 999999999999999999999999999999877778999999999999998 5 7
Q ss_pred eeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchhhh
Q 005021 302 TTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAA 381 (719)
Q Consensus 302 t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~ 381 (719)
|+||+|.+.+++...||+.+++.++++.++++++|+.+||++|++++.+|+.. .+|...+..|++.+.+|++++|+...
T Consensus 285 T~kG~G~~~~e~~~~~Hg~~l~~e~~~~~~~~l~~~~~pF~~~~~~~~~~~~~-~~g~~~~~~w~~~~~~~~~~~p~~a~ 363 (711)
T 3uk1_A 285 TRIGNGAATKAGGHDVHGAPLGADEIAKTREALGWTWAPFVIPQEVYAAWDAK-EAGKRSEDDWNAAFAQYRAKYPAEAA 363 (711)
T ss_dssp C--------------------CHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cccccCCCCCCCcccccCCCCCHHHHHHHHHHhCCCCCCccCChHHHHHHHHH-hccchhHHHHHHHHHHHHhhChhhHH
Confidence 89999998888888999999999999999999999989999999998898755 66777788999999999998998888
Q ss_pred hhhhhhcCCCCCcccccCCCCCC----CCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccC---
Q 005021 382 EFKSISSGQLPAGWEKALPTYTP----ESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDT--- 454 (719)
Q Consensus 382 ~~~~~~~g~~p~~~~~~~~~~~~----~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~--- 454 (719)
++.+..++++|.+|...++.+.. ..++.+||++++++|.++++++|+++++++|+++|+++.++++..|++ +
T Consensus 364 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~-~~~~ 442 (711)
T 3uk1_A 364 EFERRMAGTLPADWAAKAAAIVAGANERGETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRA-NADG 442 (711)
T ss_dssp HHHHHHHTCCCTTHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEE-CSSS
T ss_pred HHHHhhccCCCchHHHHhhHhhhhhhccccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhh-hhcc
Confidence 88877788888777544333211 134578999999999999999999999999998887766566677876 7
Q ss_pred CC---CCccccccccchHHHHHHHHHhc-CCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCC
Q 005021 455 PE---ERNVRFGVREHGMGAICNGIALH-SPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQ 530 (719)
Q Consensus 455 ~p---~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq 530 (719)
|| +||||+||+||+|+++|+|||++ | ++||+.+|++|++|+++|||+.|++++||+|+++|+|+|+|+||+|||
T Consensus 443 ~p~~~~R~~d~GIaE~~mv~~AaGlA~~~G--~~Pv~~~f~~F~~~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~THq 520 (711)
T 3uk1_A 443 PGVQWGNHINYGVREFGMSAAINGLVLHGG--YKPFGGTFLTFSDYSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTHQ 520 (711)
T ss_dssp SSEECCSEEECCSCHHHHHHHHHHHHHHSS--CEEEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTC
T ss_pred CCCCCCcEEEeCccHHHHHHHHHHHHHcCC--CEEEEEEhHHHHHHHHHHHHHhhhcCCCEEEEEECCCcCcCCCCCccC
Confidence 99 99999999999999999999996 7 799999999999999999999999999999999999999999999999
Q ss_pred ChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCC--ccccccccEEEecCCCCCC---
Q 005021 531 PIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNK--- 605 (719)
Q Consensus 531 ~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~--~~~~~~G~~~i~~~~~~~g--- 605 (719)
++||+++||+||||+|++|+|++|++.+|++|++ .++|+|||++|+++|.++.++ .+.+++|+|++++.. |
T Consensus 521 ~~ed~a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~-~~~Pv~ir~~r~~~p~~~~~~~~~~~i~~G~~vl~~~~---G~~~ 596 (711)
T 3uk1_A 521 SVEHVASLRLIPNLDVWRPADTVETAVAWTYAVA-HQHPSCLIFSRQNLAFNARTDAQLANVEKGGYVLRDWD---EEIV 596 (711)
T ss_dssp CSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHH-SSSCEEEECCSSEECCCCCCHHHHHHGGGSSEEEECCC---SSCC
T ss_pred ChhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh-cCCCEEEEeeCCCCCCCCCccccccccCCCeEEEEecC---CCCC
Confidence 9999999999999999999999999999999997 799999999999988765432 246889999776522 5
Q ss_pred -CCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCce
Q 005021 606 -PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGK 684 (719)
Q Consensus 606 -~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~ 684 (719)
+||+||++|+||++|++||++|+++||+++|||++|++|||+++..|+++|++++.. +|++|++...||+++++.+..
T Consensus 597 ~~dvtiia~G~~v~~al~Aa~~L~~~GI~~~Vid~~si~plD~~~~~~~~sv~~~~~~-~V~vE~~~~~g~~~~~g~~~~ 675 (711)
T 3uk1_A 597 ARKIILIATGSEVELAMKAVEPLAQQGIAARVVSMPSSDVFDRQDAEYRERVLPHGVR-RVAIEAGVTDFWRKYVGLEGG 675 (711)
T ss_dssp SEEEEEEECTTHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHTSCHHHHHHHSCTTSC-EEEECSSCSGGGHHHHTTTSE
T ss_pred CCCEEEEEecHHHHHHHHHHHHHHHcCCCeEEEecCcCCccchhHHHHHHHhhccCCe-EEEEeCCccccHHHHhCCCce
Confidence 799999999999999999999999999999999999999999988788899998864 699999999999999887778
Q ss_pred EEeeCcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 685 AIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 685 ~ig~d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
++|+|.|+.||+.++|+++||||+++|+++|+++|
T Consensus 676 ~iGid~Fg~sg~~~~L~~~~Glt~e~Iv~~~~~~l 710 (711)
T 3uk1_A 676 VVGIDTFGESAPAGVLFKHFGFTVEHVIETAKAVL 710 (711)
T ss_dssp EECCCSCCCSSCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred EEEeCCCcCcCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999864
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-122 Score=1075.37 Aligned_cols=623 Identities=48% Similarity=0.812 Sum_probs=562.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCC
Q 005021 87 LVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS 166 (719)
Q Consensus 87 ~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~ 166 (719)
+++++|++||.++++++.++++||+|++||++||+++||+.+|+|||+||+|++|||||||+||++|++|++++++||.
T Consensus 5 ~~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~- 83 (663)
T 3kom_A 5 IPREFSNAIRFLSIDATLKAKSGHPGMPMGMADIATVLWTKFLKHNPNNPHWINRDRFVLSNGHGSMLLYSLLHLTGYD- 83 (663)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEECSSSCHHHHHHHHHHHTCS-
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhhheeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCCC-
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999999999982
Q ss_pred CChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChh
Q 005021 167 VQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEG 246 (719)
Q Consensus 167 ~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG 246 (719)
++.++|++|||++|.++|||++..+||+++++|++|+|++.|+|+|+|.++++.+||++++++.+++|||++|||+++||
T Consensus 84 ~~~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG 163 (663)
T 3kom_A 84 LSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEG 163 (663)
T ss_dssp CCHHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSH
T ss_pred CCHHHHHhhccCCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhc
Confidence 38999999999999999999998899999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEE-EE-------------------------
Q 005021 247 IANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVI-WV------------------------- 300 (719)
Q Consensus 247 ~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~-~v------------------------- 300 (719)
++|||+++|++++|+|||+|+|||+|+|+++++....+++.++|++|||+++ .|
T Consensus 164 ~~~Eal~~A~~~~L~~livi~dnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~~~~P~lI 243 (663)
T 3kom_A 164 VSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWFSDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQQQKPTLI 243 (663)
T ss_dssp HHHHHHHHHHHHTCTTEEEEEEECC-----CGGGTCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHCSSSCEEE
T ss_pred hHHHHHHHHHHhCCCeEEEEEECCCcccccchhhhcchhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 9999999999999999999999999999999987778899999999999999 66
Q ss_pred --eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCch
Q 005021 301 --TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPE 378 (719)
Q Consensus 301 --~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 378 (719)
+|+||+|.+..++...+|+.++++++++.++++++|+.+||.+|++++++|+.. .+|...+..|++.+.+|+++ |
T Consensus 244 ~~~T~kg~G~~~~e~~~~~Hg~~l~~e~~~~~~~~l~~~~~pf~~~~~~~~~~~~~-~~g~~~~~~w~~~~~~~~~~-p- 320 (663)
T 3kom_A 244 CCKTVIGFGSPEKAGTASVHGSPLSDQERASAAKELNWDYQAFEIPQDVYKYWDAR-EKGQALEANWQGQRNLFKDS-P- 320 (663)
T ss_dssp EEECCTTTTCTTTTTCSSTTSSCCCHHHHHHHHHHTTCCCCTTCCCHHHHHHHCCH-HHHHHHHHHHHHHHHHHTTS-T-
T ss_pred EEecccccccCCCCCCccccCCCCCHHHHHHHHHHcCCCCCCccCChhHHHHHHHH-hhcchhhHHHHHHHHHhhcc-h-
Confidence 689999999888888999999999999999999999888999999888888644 55667778999999999877 7
Q ss_pred hhhhhhhhhcCCCCCcccccCCCCC----CCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccC
Q 005021 379 EAAEFKSISSGQLPAGWEKALPTYT----PESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDT 454 (719)
Q Consensus 379 ~~~~~~~~~~g~~p~~~~~~~~~~~----~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~ 454 (719)
...++.+.+++++|.+|...++.+. ...++.+||++++++|.++++++|+++++++|+++|+++.+++...|++++
T Consensus 321 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~ 400 (663)
T 3kom_A 321 KFDEFERVLSKELPVGLESAINDYIASQLSNPVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQ 400 (663)
T ss_dssp THHHHHHHHHTCCCTTHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCS
T ss_pred HHHHHHHHhccCCCcchhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCccccccccccccc
Confidence 6777777778888877754333221 123468999999999999999999999999999988877666666785338
Q ss_pred CCCCccccccccchHHHHHHHHHhc-CCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChh
Q 005021 455 PEERNVRFGVREHGMGAICNGIALH-SPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIE 533 (719)
Q Consensus 455 ~p~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~e 533 (719)
||+||||+||+||+|+++|+|||++ | ++||+.+|++|++|+++|||+.|++++||+|+++|+|+|+|+||+|||++|
T Consensus 401 ~p~R~~d~GIaE~~~v~~a~GlA~~gG--~~P~~~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~THq~~e 478 (663)
T 3kom_A 401 EGANYLSYGVREFGMAAIMNGLSLYGG--IKPYGGTFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQPIE 478 (663)
T ss_dssp TTCCEEECCSCHHHHHHHHHHHHHHSS--CEEEEEEEGGGHHHHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSS
T ss_pred CCCCeEecCccHHHHHHHHHHHHHcCC--CEEEEEehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCcCCHH
Confidence 9999999999999999999999999 6 799999999999999999999999999999999999999999999999999
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCC--ccccccccEEEecCCCCCCCCEEEE
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNKPDVILI 611 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~--~~~~~~G~~~i~~~~~~~g~dvtIv 611 (719)
|+++||+||||+|++|+|++|++.+|++|+++.++|++||++|+++|.++... .+.+++|+|++++.+ |+|||||
T Consensus 479 d~a~lr~iPnl~V~~Pad~~e~~~~l~~A~~~~~~Pv~ir~~r~~~p~~~~~~~~~~~~~~G~~vl~~~~---g~dvtii 555 (663)
T 3kom_A 479 HVPSLRLIPNLSVWRPADTIETMIAWKEAVKSKDTPSVMVLTRQNLMPVVQTQHQVANIARGGYLVKDNP---DAKLTIV 555 (663)
T ss_dssp HHHHHHTSTTCEEECCCSHHHHHHHHHHHHHCSSCCEEEECCSSEECCCCCCHHHHHHHTTTCEEEECCT---TCSCEEE
T ss_pred HHHHHhcCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEccCccCCCcCccccchhcccCceEEEEecC---CCCEEEE
Confidence 99999999999999999999999999999975699999999999988765432 245788988877642 6899999
Q ss_pred EeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhc-CCceEEeeCc
Q 005021 612 GTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVG-SKGKAIGIDR 690 (719)
Q Consensus 612 a~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~-~~~~~ig~d~ 690 (719)
++|+||++|++||++|+++||+++|||++|++|||+++..|+++|++++.. +|++|++...||.++++ .....+|+|.
T Consensus 556 a~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~si~p~D~~~~~~~~~vl~~~~~-~v~vE~~~~~g~~~~~gG~~~~~igid~ 634 (663)
T 3kom_A 556 ATGSEVELAVKVANEFEKKGIKLNVASIPCVEVFATQAHEYKKTVIKDDIP-AVFVEMAQPDMWYKYMPKAGGEVKGIYS 634 (663)
T ss_dssp ECTTHHHHHHHHHHHHHHTTCCCEEEECSCHHHHHTSCHHHHHHHSCTTSC-EEEECSSCCGGGGGGCCTTCEEEECCCS
T ss_pred EecHHHHHHHHHHHHHHhcCCCeEEEEcCcCCcccccHHHHHHHhcCCCCe-EEEEecCCcccHHHHhcccCCcEEEecC
Confidence 999999999999999999999999999999999999998888899988765 59999999999999886 5667899999
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 691 FGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 691 f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
|+.+|+.++|+++||||+++|+++|++++
T Consensus 635 Fg~sg~~~~l~~~~Glt~e~I~~~~~~~~ 663 (663)
T 3kom_A 635 FGESAPAEDLFKRFGFTVENISNIVAKYV 663 (663)
T ss_dssp CCCSSCHHHHHHHHTCSHHHHHHHHTTTC
T ss_pred CcCCCCHHHHHHHHCcCHHHHHHHHHhhC
Confidence 99999999999999999999999998865
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-118 Score=1033.73 Aligned_cols=597 Identities=43% Similarity=0.711 Sum_probs=538.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCC
Q 005021 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD 165 (719)
Q Consensus 86 ~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~ 165 (719)
+.|+++|++||.++++++.++++||+|++||++||+++| ..+|+|||+||+|++|||||||+||++|++|++|+++||.
T Consensus 4 ~~l~~~a~~iR~~~i~~v~~a~~GH~g~~lg~~ei~~~L-~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~ 82 (632)
T 3l84_A 4 QILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVL-SYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYD 82 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHH-TTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcChhHHHHHHHH-HHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhCCC
Confidence 569999999999999999999999999999999999999 6789999999999999999999999999999999999982
Q ss_pred CCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccCh
Q 005021 166 SVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME 245 (719)
Q Consensus 166 ~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~e 245 (719)
++.++|++|||++|.++|||++ ++||++++||++|+|++.|+|+|+|.++++.+|| ++..+++|||++|||+++|
T Consensus 83 -~~~~~l~~~r~~~s~~~ghp~~-~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n---~~~~d~~v~~v~GDG~~~e 157 (632)
T 3l84_A 83 -LSLEDLKNFRQLHSKTPGHPEI-STLGVEIATGPLGQGVANAVGFAMAAKKAQNLLG---SDLIDHKIYCLCGDGDLQE 157 (632)
T ss_dssp -CCHHHHTTTTCTTCSSCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHC---TTTCCCCEEEEEEHHHHHS
T ss_pred -CCHHHHHHHhcCCCCCCCCCCC-CCCCcccCCcchhhHHHHHHHHHHHHHhhccccc---cCCCCCeEEEEECCcchhh
Confidence 3899999999999999999999 9999999999999999999999999999998876 3345899999999999999
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE-------------------------
Q 005021 246 GIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV------------------------- 300 (719)
Q Consensus 246 G~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v------------------------- 300 (719)
|++|||+++|++++|+|||+|+|||+|+|+++++....+++.++|++|||+++.|
T Consensus 158 G~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A~~~~~P~lI~ 237 (632)
T 3l84_A 158 GISYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYEEINKALEQAKKSTKPCLII 237 (632)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHHHTCSSCEEEE
T ss_pred ccHHHHHHHHHHcCCCcEEEEEECCCcccccchhhhcChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 9999999999999999999999999999999998777889999999999999987
Q ss_pred -eeeecCCCccccccccccCCCCCHHHHHHHHHHcCC-CCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCch
Q 005021 301 -TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPE 378 (719)
Q Consensus 301 -~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~-~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 378 (719)
+|+||+|.+..++...||+.+++.++++.++++++| |.+||++|++++.+|++...+|......|++.+.+ +.+|+
T Consensus 238 v~T~kG~G~~~~e~~~~~Hg~~l~~e~~~~~~~~l~~~~~~~f~v~~~~~~~~~~~~~~g~~~~~~w~~~~~~--~~~p~ 315 (632)
T 3l84_A 238 AKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEK--SAKKE 315 (632)
T ss_dssp EECCTTTTCGGGTTCGGGSSSCCCHHHHHHHHHHHTCCTTCCSCCCHHHHHHHHTHHHHHHHHHHHHHHHHHH--SSCHH
T ss_pred EeeEeeecCCCCCCcccccCCCCCHHHHHHHHHHhCCCCCCCccCChHHHHHHHHHHhhcchhHHHHHHHhhc--ccCch
Confidence 789999998888888999999999999999999999 78899999998888875556677778889988765 56676
Q ss_pred hhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC-CC
Q 005021 379 EAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EE 457 (719)
Q Consensus 379 ~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~-p~ 457 (719)
...++ +|.+|...+|.|.. ..+.++|++++++|.++++.+|+++++++|+++|+++.++ +.+ +| |+
T Consensus 316 ~~~~~-------~p~~~~~~~~~~~~-~~~~a~r~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~~~----~~~-~f~p~ 382 (632)
T 3l84_A 316 LLERL-------LNPDFNKIAYPDFK-GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELH----SMG-DFVEG 382 (632)
T ss_dssp HHHHH-------HSCCSTTCCCCCCT-TCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCT----TSC-BTTTS
T ss_pred hhhhh-------Cccchhhhcchhcc-ccchHHHHHHHHHHHHHHhhCCCEEEEecccCCccCcchh----ccc-ccCCC
Confidence 65544 36677776676643 2468899999999999999999999999999877664321 223 68 99
Q ss_pred CccccccccchHHHHHHHHHhc-CCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhh
Q 005021 458 RNVRFGVREHGMGAICNGIALH-SPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia 536 (719)
||||+||+||+|+++|+|||++ | ++||+++|++|++|+++|||+.|++++||+|+++|+|+|+|+||+|||++||++
T Consensus 383 R~~d~GIaE~~~v~~a~GlA~~gG--~~P~~~~f~~F~~~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a 460 (632)
T 3l84_A 383 KNIHFGIREHAMAAINNAFARYGI--FLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLS 460 (632)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSS--CEEEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHH
T ss_pred CeEEeCccHHHHHHHHHHHHHcCC--CEEEEEecHHHHHHHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHH
Confidence 9999999999999999999999 6 799999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCC--CccccccccEEEecCCCCCCCCEEEEEeC
Q 005021 537 SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGAYIISDNSSGNKPDVILIGTG 614 (719)
Q Consensus 537 ~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~--~~~~~~~G~~~i~~~~~~~g~dvtIva~G 614 (719)
+||+||||+|++|+|++|++.+|++|++ .++|+|||++|+.+ ++.. ...++.+|++++++.+ |+|+|||++|
T Consensus 461 ~lr~iP~l~V~~P~d~~e~~~~l~~A~~-~~~Pv~ir~~r~~~--~~~~~~~~~~~~~g~~vl~~~~---g~dvtiia~G 534 (632)
T 3l84_A 461 TFRAMPNFLTFRPADGVENVKAWQIALN-ADIPSAFVLSRQKL--KALNEPVFGDVKNGAYLLKESK---EAKFTLLASG 534 (632)
T ss_dssp HHHHSSSCEEECCSSHHHHHHHHHHHHH-CSSCEEEECCSSCB--CCCCCCSBCCGGGSSEEEECCT---TCSEEEEECG
T ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEEcCCCC--CCCccccccccccccEEEEecC---CCCEEEEEec
Confidence 9999999999999999999999999997 79999999999886 3322 2245666767766532 6899999999
Q ss_pred HhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCCCC
Q 005021 615 SELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGAS 694 (719)
Q Consensus 615 ~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~~~ 694 (719)
+||++|++||++|+++||+++|||++|++|||+++..|+++|++ + . +|++|+++..||+++++ .++|+|+|+.|
T Consensus 535 ~~v~~al~Aa~~L~~~Gi~~~Vi~~~~i~PlD~~~~~~~~sv~~-~-~-vv~vE~~~~~g~~~~~~---~~iGid~Fg~s 608 (632)
T 3l84_A 535 SEVWLCLESANELEKQGFACNVVSMPCFELFEKQDKAYQERLLK-G-E-VIGVEAAHSNELYKFCH---KVYGIESFGES 608 (632)
T ss_dssp GGHHHHHHHHHHHHHTTCCEEEEECSBHHHHHTSCHHHHHHHCC-S-E-EEEECSSCCGGGGGTCS---EEECCCSCCCS
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEecCcCCCcchhHHHHHHHhcC-C-C-EEEEeCChhhhHHHHhC---eEEEcCCCccc
Confidence 99999999999999999999999999999999997667788887 2 3 69999999999998875 77999999999
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q 005021 695 APAGKIYKEFGITAEAVITAAKE 717 (719)
Q Consensus 695 g~~~el~~~~gl~~e~I~~~i~~ 717 (719)
|+.++|+++||||+++|+++|++
T Consensus 609 g~~~~l~~~~Glt~~~I~~~i~~ 631 (632)
T 3l84_A 609 GKDKDVFERFGFSVSKLVNFILS 631 (632)
T ss_dssp SCHHHHHHHTTCSHHHHHHHHTT
T ss_pred CCHHHHHHHhCcCHHHHHHHHhh
Confidence 99999999999999999999874
|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-117 Score=1040.16 Aligned_cols=642 Identities=86% Similarity=1.364 Sum_probs=571.9
Q ss_pred hhccccc-CCcHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCch
Q 005021 75 AVETLET-STDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCM 153 (719)
Q Consensus 75 ~~~~~~~-~~~~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~ 153 (719)
+++|+.. .-+.+.|+++|++||.++++|+.++++||+|++||++||+++||+.+|+|||+||+|++|||||||+||++|
T Consensus 2 ~~~~~~~~~l~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~ 81 (675)
T 1itz_A 2 AVETLQGKAATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCM 81 (675)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHH
T ss_pred ccchhccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCccHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHH
Confidence 3455544 223345999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcE
Q 005021 154 LQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHY 233 (719)
Q Consensus 154 ~~Ya~l~l~G~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~ 233 (719)
++|++|+++|+..++.++|++|||++|.++|||++.++||+++++|++|+|++.|+|+|+|.++++++||+++++..+++
T Consensus 82 ~lYa~l~l~G~~~~~~~~l~~~r~~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~ 161 (675)
T 1itz_A 82 LQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHY 161 (675)
T ss_dssp HHHHHHHHHTCTTCCHHHHTTTTSTTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCC
T ss_pred HHHHHHHHcCCCCCCHHHHHhcccCCCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCE
Confidence 99999999998113889999999999999999999889999999999999999999999999999999999988888999
Q ss_pred EEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEE-EE------------
Q 005021 234 TYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVI-WV------------ 300 (719)
Q Consensus 234 v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~-~v------------ 300 (719)
|||++|||+++||++|||+++|++++|+|||+|+|||+++|+++++....+++.++|++|||+++ .|
T Consensus 162 v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~a 241 (675)
T 1itz_A 162 TYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAA 241 (675)
T ss_dssp EEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCSCHHHHHHHTTCEEEEESCTTTCHHHHHHH
T ss_pred EEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChhhhcChhHHHHHHhCCCEEEEEecCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999987667889999999999998 43
Q ss_pred ----------------eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHH
Q 005021 301 ----------------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAE 364 (719)
Q Consensus 301 ----------------~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~ 364 (719)
+|.+|+|.+..++...+|+.+++.++++.++++++|+.++|+++.+++.+|+....+|...+..
T Consensus 242 l~~a~~~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~ 321 (675)
T 1itz_A 242 IKEAKAVTDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTPEGAALEAD 321 (675)
T ss_dssp HHHHHHCCSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeeecccCcccccCcccccCCCCCHHHHHHHHHHcCCCcccccCChhHHHHHHHHHhhhhhhHHH
Confidence 6889999887788889999999999999999999998889999988877775433446666778
Q ss_pred HHHHHhhhhhcCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccc
Q 005021 365 WNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLL 444 (719)
Q Consensus 365 ~~~~~~~~~~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~ 444 (719)
|++.+.+|...+|+....+.+..++++|..|...+|.|....++.++|++++++|.++++++|+++++++|+++++++.+
T Consensus 322 ~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~ 401 (675)
T 1itz_A 322 WNAKFAEYEKKYADDAATLKSIITGELPTGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLL 401 (675)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHCCCCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCC
T ss_pred HHHHHHHhhhhChHHHHHHHHHhcccCCchhhhhhhhhccCCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccc
Confidence 99998888877888776677777788888888778877433456899999999999999999999999999988877666
Q ss_pred cccccCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCC
Q 005021 445 KMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGE 524 (719)
Q Consensus 445 ~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~ 524 (719)
+++..|++++||+||||+||+||+|+++|+|||++|.+++||+++|++|++|+++|||+.|++++||+|+++|+|+++|+
T Consensus 402 ~g~~~f~~~~~~~R~id~gIaE~~~v~~a~GlA~~G~~~~P~~~t~~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g~G~ 481 (675)
T 1itz_A 402 KMFGDFQKDTAEERNVRFGVREHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGE 481 (675)
T ss_dssp TTCCBCCTTCTTCCBCCCCSCHHHHHHHHHHHHTTCTTCEEEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCT
T ss_pred cccccccccCCCCCeEeecccHHHHHHHHHHHHhcCCCCEEEEEEHHHHHHHHHHHHHHHHhcCCCEEEEEECCccccCC
Confidence 67777864379999999999999999999999999933599999999999999999999999999999999999999999
Q ss_pred CCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCC
Q 005021 525 DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGN 604 (719)
Q Consensus 525 dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~ 604 (719)
||+|||++||+++||+||||+|++|+|++|++.+|++|++..++|++||++|+.+|.++.+....+++|+|++++.. .
T Consensus 482 dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~p~~~~~~~~~~~~Ga~vl~~~~--~ 559 (675)
T 1itz_A 482 DGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPSILALSRQKLPHLPGTSIEGVEKGGYTISDNS--T 559 (675)
T ss_dssp TCTTTCCSSHHHHHHSSSSCEEECCCSHHHHHHHHHHHHHCTTSCEEEEECSSCBCCCTTCCHHHHTTSSEEEEECC--S
T ss_pred CCCCcCcHHHHHHhccCCCeEEEECCCHHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCccccccccCCEEEeccc--C
Confidence 99999999999999999999999999999999999999975589999999999988776543335788988776521 0
Q ss_pred C--CCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCC
Q 005021 605 K--PDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSK 682 (719)
Q Consensus 605 g--~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~ 682 (719)
| +|++||++|+++++|++|+++|+++||+++|||++|++|||+++..|++++++++.+.+|++|++...||+++++.+
T Consensus 560 G~~~dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~~~~~ 639 (675)
T 1itz_A 560 GNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYVGAQ 639 (675)
T ss_dssp TTCCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTHHHHCSS
T ss_pred CCCCCEEEEEECHHHHHHHHHHHHHHhcCCcEEEEEeccCcccccchHHHHHHHhccCCceEEEEECCccccHHHhcCCC
Confidence 3 89999999999999999999999999999999999999999997667788998853346999999999999998777
Q ss_pred ceEEeeCcCCCCCCHHHHHHHhCCCHHHHHHHHHHh
Q 005021 683 GKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718 (719)
Q Consensus 683 ~~~ig~d~f~~~g~~~el~~~~gl~~e~I~~~i~~~ 718 (719)
+.++|+|.|+.+|+.++|+++||||+++|+++|+++
T Consensus 640 ~~~ig~d~fg~sg~~~~l~~~~gl~~~~I~~~i~~~ 675 (675)
T 1itz_A 640 GKAIGIDKFGASAPAGTIYKEYGITVESIIAAAKSF 675 (675)
T ss_dssp CEEECCCSCCCSSCHHHHHHHHTCSHHHHHHHHTTC
T ss_pred ceEEEeCCCCCCCCHHHHHHHHCcCHHHHHHHHHhC
Confidence 788999999999999999999999999999999763
|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-116 Score=1028.63 Aligned_cols=618 Identities=52% Similarity=0.894 Sum_probs=560.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCC
Q 005021 88 VEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV 167 (719)
Q Consensus 88 l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~ 167 (719)
|+++|++||.++++|+.++++||+|++||++||+++||+.+|+|||+||+|++|||||||+||++|++|++++++|+. +
T Consensus 6 ~~~~a~~iR~~~~~~v~~a~~GH~g~~ls~a~~~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~-~ 84 (673)
T 1r9j_A 6 IEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYN-L 84 (673)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCS-C
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHhhCCCCCCCCCCCCCeEEEccccHHHHHHHHHHHcCCC-C
Confidence 778999999999999999999999999999999999999999999999999999999999999999999999999982 3
Q ss_pred ChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhH
Q 005021 168 QEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI 247 (719)
Q Consensus 168 ~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~ 247 (719)
+.++|++|||++|.++|||++.++||+++++|++|+|++.|+|+|+|.++++++||+++++..+++|||++|||+++||+
T Consensus 85 ~~~~l~~~r~~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~ 164 (673)
T 1r9j_A 85 TMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGV 164 (673)
T ss_dssp CHHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccH
Confidence 89999999999999999999888999999999999999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEE-EE--------------------------
Q 005021 248 ANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVI-WV-------------------------- 300 (719)
Q Consensus 248 ~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~-~v-------------------------- 300 (719)
+|||+++|++++|+|||+|||||+++|++++.....+++.++|++|||+++ .|
T Consensus 165 ~~Eal~~A~~~~L~~li~i~d~N~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~~~~P~lI 244 (673)
T 1r9j_A 165 CQEALSLAGHLALEKLIVIYDSNYISIDGSTSLSFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMI 244 (673)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGTCCCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEE
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCCccccchhhccCHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCCEEE
Confidence 999999999999999999999999999999976567899999999999998 44
Q ss_pred --eeeecCCCccccccccccCCCCCHHHHHHHHHHcCC-CCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCc
Q 005021 301 --TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYP 377 (719)
Q Consensus 301 --~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~-~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p 377 (719)
+|.+|+|.+ .++...+|+.+++.++++.++++++| +..+|.+|+++.++|+....+|...++.|++.+.+|++.+|
T Consensus 245 ~~~T~kg~G~~-~~~~~~~H~~~~~~ee~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~P 323 (673)
T 1r9j_A 245 VQTTTIGFGSS-KQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEELLAKYTAAFP 323 (673)
T ss_dssp EEECCTTTTST-TTTSGGGTSSCCCHHHHHHHHHHTTSCSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred EEecccccccc-cCCCcccccCCCCHHHHHHHHHhcCCCCcccccCCHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhCh
Confidence 788999988 77788999999999999999999999 56789999999888876546677788899999999988888
Q ss_pred hhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccc--cccCcccCC
Q 005021 378 EEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKM--FGDFQKDTP 455 (719)
Q Consensus 378 ~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g--~~~f~~~~~ 455 (719)
+....+.+...+++|..|...+|.| .++.++|++++++|.++++++|+++++++|+++|+++..++ ...|++++|
T Consensus 324 ~~~~~~~~~~~~~~p~~~~~~~p~~---~~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~ 400 (673)
T 1r9j_A 324 AEGAAFVAQMRGELPSGWEAKLPTN---SSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSK 400 (673)
T ss_dssp HHHHHHHHHHTTCCCTTTGGGSCCC---CSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBT
T ss_pred hHHHHHHHHhcCCCCchhhhhcccc---ccchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCC
Confidence 8777777777788888887777877 34689999999999999999999999999998776654433 445764379
Q ss_pred CCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 456 EERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 456 p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|+||||+||+||+|+++|+|||++| |++||+.+|++|++|+++|||+.|++++||+|+++|+|+++|+||+|||++||+
T Consensus 401 ~~R~id~GIaE~~~~~~a~GlA~~G-G~~P~~~~~~~F~~~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tHq~~edl 479 (673)
T 1r9j_A 401 EGRYIRFGVREHAMCAILNGLDAHD-GIIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELV 479 (673)
T ss_dssp TCCEEECCSCHHHHHHHHHHHHHHS-SCEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHH
T ss_pred CCCeEecCccHHHHHHHHHHHHhcC-CCEEEEEehHHHHHHHHHHHHHHHhcCCCEEEEEECCccCcCCCCcccCCHHHH
Confidence 9999999999999999999999995 279999999999999999999999999999999999999999999999999999
Q ss_pred hHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCH
Q 005021 536 ASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGS 615 (719)
Q Consensus 536 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~ 615 (719)
++||+|||++|++|+|++|++.++++|++..++|++||++|++.+.++.+..+.+++|+|++++. +.+||+||++|+
T Consensus 480 a~lr~iP~l~V~~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~~~~~~~~~~~~~~Ga~vl~~g---~~~dv~lia~G~ 556 (673)
T 1r9j_A 480 AALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPTVLCLSRQNTEPQSGSSIEGVRHGAYSVVDV---PDLQLVIVASGS 556 (673)
T ss_dssp HHHHHSTTCEEECCSSHHHHHHHHHHHHHCTTCCEEEECCSSEECCCTTCCHHHHHTSCEEEECC---TTCSEEEEECGG
T ss_pred HHHcCCCCCEEEeCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCcccccccCCCEEEeeC---CCCCEEEEEech
Confidence 99999999999999999999999999997558999999999988876654333578898766542 128999999999
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCCCCC
Q 005021 616 ELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASA 695 (719)
Q Consensus 616 ~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~~~g 695 (719)
++++|++|+++|+++ |+++|||++|++|||+++..|+..+++.... +|++|++...||+++++ .++|+|.|+.+|
T Consensus 557 ~v~~al~Aa~~L~~~-i~~~Vv~~~sl~pld~~~~~~i~~~~~~~~~-vv~vE~~~~~g~~~~v~---~~~g~d~f~~sg 631 (673)
T 1r9j_A 557 EVSLAVDAAKALSGE-LRVRVVSMPCQELFDAQPDTYRQAVLPAGVP-VVSVEAYVSFGWEKYSH---AHVGMSGFGASA 631 (673)
T ss_dssp GHHHHHHHHHHHTTT-CCEEEEECSCHHHHHTSCHHHHHHHSCTTSC-EEEECSSCCTTGGGTCS---EEESCSSCCCSS
T ss_pred hHHHHHHHHHHHHhc-CCEEEEeCCCCchhhcccHHHHHHHhccCCe-EEEEeCCCccchHHhcC---ceEEeccCCCCC
Confidence 999999999999988 9999999999999999976666667765544 69999999999998874 348999999999
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 696 PAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 696 ~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
+.++|+++||+|+++|+++|+++|
T Consensus 632 ~~~~L~~~~g~~~~~I~~~i~~~l 655 (673)
T 1r9j_A 632 PAGVLYKKFGITVEEVVRTGRELA 655 (673)
T ss_dssp CHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999998764
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-116 Score=1032.10 Aligned_cols=625 Identities=51% Similarity=0.870 Sum_probs=562.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCC
Q 005021 88 VEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV 167 (719)
Q Consensus 88 l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~ 167 (719)
|+++|++||.++++|+.++++||+|++||++||+++||+.+|+|||+||+|++|||||||+||++|++|++++|+|+. +
T Consensus 4 ~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~-~ 82 (669)
T 2r8o_A 4 RKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYD-L 82 (669)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCS-C
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHHhhcCCcCCCCCCCCCeEEEeCccHHHHHHHHHHHcCCC-C
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999999982 4
Q ss_pred ChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhH
Q 005021 168 QEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI 247 (719)
Q Consensus 168 ~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~ 247 (719)
+.++|++|||++|+++|||++.++||+++++|++|+|++.|+|+|+|.++++.+||+++.++.+++|||++|||+++||+
T Consensus 83 ~~~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~ 162 (669)
T 2r8o_A 83 PMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGI 162 (669)
T ss_dssp CHHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHHhhcCCCCCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchH
Confidence 89999999999999999999888999999999999999999999999999999999888777789999999999999999
Q ss_pred HHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEE-EE--------------------------
Q 005021 248 ANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVI-WV-------------------------- 300 (719)
Q Consensus 248 ~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~-~v-------------------------- 300 (719)
+|||+++|++++|+|||+|+|||+|+|+++++....+++.++|++|||+++ .|
T Consensus 163 ~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 242 (669)
T 2r8o_A 163 SHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLM 242 (669)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHCCSSCEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCcEeccccccccCccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 999999999999999999999999999999886667889999999999999 76
Q ss_pred -eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchh
Q 005021 301 -TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEE 379 (719)
Q Consensus 301 -~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 379 (719)
+|.+|+|.+..++...+|+.+++.++++.++++++|+..+|+++.++...|+.. .+|+..+..|++.+.+|++.+|+.
T Consensus 243 ~~T~kg~G~~~~~~~~~~H~~~~~~ee~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~ 321 (669)
T 2r8o_A 243 CKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAK-EAGQAKESAWNEKFAAYAKAYPQE 321 (669)
T ss_dssp EECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred EEeEeccCcCCcCCCCcccCCCCCHHHHHHHHHHcCCCcccccCCHHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhChHH
Confidence 788999988767778999999999999999999999878999998887777532 445666778999999898888987
Q ss_pred hhhhhhhhcCCCCCcccccCCCC----CCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC
Q 005021 380 AAEFKSISSGQLPAGWEKALPTY----TPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP 455 (719)
Q Consensus 380 ~~~~~~~~~g~~p~~~~~~~~~~----~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~ 455 (719)
...+.+.+.+.+|..|...+|+| ....++.++|++++++|.++++.+|+++++++|+++|+++.++++..|++ +|
T Consensus 322 ~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~-~~ 400 (669)
T 2r8o_A 322 AAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINE-DA 400 (669)
T ss_dssp HHHHHHHHHTCCCTTHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTT-CT
T ss_pred HHHHHHHhcccCChhhhhhhHHHhhhhcCCCccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccc-cC
Confidence 77776666677786665444444 11234688999999999999999999999999998887766566778976 89
Q ss_pred CCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 456 EERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 456 p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|+||||+||+||+|+++|+|||++| |++||+.+|++|++|+++|||+.|++++||+++++|+|+++|+||+|||++||+
T Consensus 401 p~R~id~GIaE~~~v~~a~GlA~~g-G~~P~~~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edl 479 (669)
T 2r8o_A 401 AGNYIHYGVREFGMTAIANGISLHG-GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQV 479 (669)
T ss_dssp TCSEEECCSCHHHHHHHHHHHHHHS-SCEEEEEEEGGGGGTTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHH
T ss_pred CCCeeecchhHHHHHHHHHHHHHcC-CCeEEEeehHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCccCCHHHH
Confidence 9999999999999999999999994 279999999999999999999999999999999999999999999999999999
Q ss_pred hHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCC--ccccccccEEEecCCCCCC-CCEEEEE
Q 005021 536 ASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNK-PDVILIG 612 (719)
Q Consensus 536 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~--~~~~~~G~~~i~~~~~~~g-~dvtIva 612 (719)
++||+||||+|++|+|++|++.+|++|++..++|+|||++|+..+.++... .+.+++|+|.+++.. | +|++||+
T Consensus 480 a~lr~iP~l~V~~Pad~~E~~~~l~~a~~~~~~Pv~i~~~r~~~~~~~~~~~~~~~~~~G~~vl~~~~---g~~dv~iva 556 (669)
T 2r8o_A 480 ASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCA---GQPELIFIA 556 (669)
T ss_dssp HHHHTSTTCEEECCSSHHHHHHHHHHHHHCSSSCEEEECCSSEECCCCCCHHHHHHGGGSCEEEECCS---SSCSEEEEE
T ss_pred HHhcCCCCCEEEecCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCCccchhhhccCCCEEEeccC---CCCCEEEEE
Confidence 999999999999999999999999999975589999999999888765432 123778988766521 4 8999999
Q ss_pred eCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCC
Q 005021 613 TGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFG 692 (719)
Q Consensus 613 ~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~ 692 (719)
+|+++++|++||++|+++||+++|||++|++|||++...|++++++++.+.+|++|++...||++++..+..++|+|.|+
T Consensus 557 ~G~~v~~al~Aa~~L~~~Gi~~~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~g~~~~~~~~~~~ig~d~fg 636 (669)
T 2r8o_A 557 TGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFG 636 (669)
T ss_dssp CGGGHHHHHHHHHHHHHHTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEEEEEEGGGGHHHHTTSSEEEEECSCC
T ss_pred ECHHHHHHHHHHHHHHhcCCCeEEEEeccCCccccchHHHHHHhccccCceEEEEeCCchhhHHHHhcCCCeEEEcCCCC
Confidence 99999999999999999999999999999999999987777888887533469999999999999987666789999999
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 693 ASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 693 ~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
.+|+.++|+++||||+++|+++|+++|
T Consensus 637 ~sg~~~~l~~~~Gl~~~~I~~~~~~~~ 663 (669)
T 2r8o_A 637 ESAPAELLFEEFGFTVDNVVAKAKELL 663 (669)
T ss_dssp CSSCHHHHHHHTTCSHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999999999875
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-115 Score=1023.87 Aligned_cols=621 Identities=53% Similarity=0.882 Sum_probs=560.2
Q ss_pred HHHH-HHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCC
Q 005021 87 LVEK-SVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD 165 (719)
Q Consensus 87 ~l~~-la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~ 165 (719)
.|++ +|++||.++++++.++++||+|++||++||+++||+. |+|||+||+|++|||||||+||++|++|++++++|+.
T Consensus 6 ~l~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~-~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~ 84 (680)
T 1gpu_A 6 DIDKLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYD 84 (680)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHT-CCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHh-CCCCccCCCCCCCCEEEEecchHHHHHHHHHHHhCCC
Confidence 3777 9999999999999999999999999999999999999 9999999999999999999999999999999999982
Q ss_pred CCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccCh
Q 005021 166 SVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME 245 (719)
Q Consensus 166 ~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~e 245 (719)
++.++|++|||++|.++|||++ ++||+++++|++|+|++.|+|+|+|.++++++||+++.++.+++|||++|||+++|
T Consensus 85 -~~~~~l~~~r~~g~~~~ghp~~-~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~e 162 (680)
T 1gpu_A 85 -LSIEDLKQFRQLGSRTPGHPEF-ELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQE 162 (680)
T ss_dssp -CCHHHHTTTTCTTCSCCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHS
T ss_pred -CCHHHHHhhcccCCCCCCCCCc-cCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccch
Confidence 4899999999999999999998 89999999999999999999999999999999999887778999999999999999
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEE-EE------------------------
Q 005021 246 GIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVI-WV------------------------ 300 (719)
Q Consensus 246 G~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~-~v------------------------ 300 (719)
|++|||+++|++++|+|+|+|+|||+|+|+++++....+++.++|++|||+++ .|
T Consensus 163 G~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~~~~~P~ 242 (680)
T 1gpu_A 163 GISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPT 242 (680)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHCTTSCE
T ss_pred hhHHHHHHHHHHhCCCcEEEEEECCCceEecccccccCccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHCCCCCE
Confidence 99999999999999999999999999999999986567889999999999998 43
Q ss_pred ----eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCC-CCCCCCcHHHHHHHHHH-hhcchhHHHHHHHHHhhhhh
Q 005021 301 ----TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWP-YEPFHVPEDVKKHWSRH-VAEGATLEAEWNAKFAEYEK 374 (719)
Q Consensus 301 ----~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~-~~~~~~~~~v~~~~~~~-~~~g~~~~~~~~~~~~~~~~ 374 (719)
+|.+|+|.+ .++...+|+.+++.++++..+++++|+ ..+|.++++++++|... ..+|+..+..|++.+.+|.+
T Consensus 243 lI~~~T~kg~G~~-~~~~~~~H~~~~~~ee~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 321 (680)
T 1gpu_A 243 LIKMTTTIGYGSL-HAGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQK 321 (680)
T ss_dssp EEEEECCTTTTST-TTTSGGGSSSCCCHHHHHHHHHHTTCCTTCCSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeecccccc-cCCCCccCCCCCCHHHHHHHHHHcCCCcCCCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 688899988 666788999999999999999999995 66899998888888642 24566677889999988887
Q ss_pred cCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCccc-
Q 005021 375 KYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKD- 453 (719)
Q Consensus 375 ~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~- 453 (719)
.+|+...++.+...+++|..|...+|.|....++.+||++++++|.++++++|+++++++|++.|+++.++|+..|++.
T Consensus 322 ~~p~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~ 401 (680)
T 1gpu_A 322 KFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPS 401 (680)
T ss_dssp HCHHHHHHHHHHHTTCCCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTT
T ss_pred hChHHHHHHHHHhcccCCchhhhhchhhccCCcchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccccccccccc
Confidence 8888777777777888888887777877423356899999999999999999999999999988777666666778642
Q ss_pred ----CCCCCccccccccchHHHHHHHHHhcCCCCc-cEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCC
Q 005021 454 ----TPEERNVRFGVREHGMGAICNGIALHSPGLI-PYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPT 528 (719)
Q Consensus 454 ----~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~-Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~T 528 (719)
+||+||||+||+||+|+++|+|||++|. ++ ||+.+|++|++|+++|||+.|++++||+|+++|+|+++|+||+|
T Consensus 402 ~~~~~~p~R~~d~gIaE~~~vg~a~GlA~~Gg-~~~P~~~~f~~F~~~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~t 480 (680)
T 1gpu_A 402 SGSGNYSGRYIRYGIREHAMGAIMNGISAFGA-NYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPT 480 (680)
T ss_dssp TSSEETTCCEEECCSCHHHHHHHHHHHHHHCT-TCEEEEEEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTT
T ss_pred ccccCCCCceecCCccHHHHHHHHHHHHhcCC-CceEEEeehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccccCCCCCc
Confidence 6999999999999999999999999983 69 99999999999999999999999999999999999999999999
Q ss_pred CCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCE
Q 005021 529 HQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDV 608 (719)
Q Consensus 529 Hq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dv 608 (719)
||++||+++||+||||+|++|+|++|++.+|++|++..++|++||++|+.+|.++.+....+++|++++++. +++||
T Consensus 481 Hq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~A~~~~~~Pv~i~~~r~~~~~~~~~~~~~~~~G~~vl~~g---~~~dv 557 (680)
T 1gpu_A 481 HQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKGGYVLQDV---ANPDI 557 (680)
T ss_dssp TCCSSHHHHHHTSSSCEEECCCSHHHHHHHHHHHHHCSSCCEEEECCSSCBCCCTTCCHHHHTTSCEEEECC---SSCSE
T ss_pred cCCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCcchhhccCCCEEEecC---CCCCE
Confidence 999999999999999999999999999999999997548999999999998877654333377898766542 12899
Q ss_pred EEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEee
Q 005021 609 ILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGI 688 (719)
Q Consensus 609 tIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~ 688 (719)
|||++|+||++|++||++|+++||+++|||++|++|||++...|+++|++++.+. |++|++...||++++. ..+|+
T Consensus 558 tiva~G~~v~~al~Aa~~L~~~Gi~~~Vvd~~~l~pld~~~~~~~~sv~~~~~~~-v~vE~~~~~g~~~~v~---~~~gv 633 (680)
T 1gpu_A 558 ILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPI-MSVEVLATTCWGKYAH---QSFGI 633 (680)
T ss_dssp EEEECTHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCSSSCE-EEECSSCSTTGGGTCS---EEECC
T ss_pred EEEEEcHHHHHHHHHHHHHHhcCCCEEEEEcCCCCcchhhhHHHHHHHhccCCce-EEEeCCccccHHHhcC---cceee
Confidence 9999999999999999999999999999999999999999877778999887555 9999999999998875 23889
Q ss_pred CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 689 DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 689 d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
|.|+.+|+.++|+++||||+++|+++|+++|
T Consensus 634 ~~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l 664 (680)
T 1gpu_A 634 DRFGASGKAPEVFKFFGFTPEGVAERAQKTI 664 (680)
T ss_dssp CSCCCCSCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999998764
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-114 Score=1012.04 Aligned_cols=618 Identities=52% Similarity=0.904 Sum_probs=557.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCC
Q 005021 87 LVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS 166 (719)
Q Consensus 87 ~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~ 166 (719)
+-+++|++||.++++++.++++||+|++||++||+++||+.+|+|||+||+|++|||||||+||++|++|++++++|+.
T Consensus 7 ~~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lYa~l~l~G~~- 85 (651)
T 2e6k_A 7 LETLSVNAIRFLAIDAVEKARSGHPGMPMGMAPLAYLLFREVMRHNPLDPDWPDRDRFVLSAGHGSMLLYAVLHLTGYD- 85 (651)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTCS-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCcchhHHHHHHHHHHHHhcCCccCCCCCCCCeEEEeCcchhHHHHHHHHHhCCC-
Confidence 3456899999999999999999999999999999999999999999999999999999999999999999999999982
Q ss_pred CChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChh
Q 005021 167 VQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEG 246 (719)
Q Consensus 167 ~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG 246 (719)
++.++|.+|||++|+++|||++.++||+++++|++|+|++.|+|+|+|.++++++||+++++..+++|||++|||+++||
T Consensus 86 ~~~~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG 165 (651)
T 2e6k_A 86 LPLEELKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEG 165 (651)
T ss_dssp CCHHHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSH
T ss_pred CCHHHHHHhhccCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchh
Confidence 48999999999999989999988899999999999999999999999999999999998888889999999999999999
Q ss_pred HHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEE-EE-------------------------
Q 005021 247 IANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVI-WV------------------------- 300 (719)
Q Consensus 247 ~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~-~v------------------------- 300 (719)
++|||+++|++++|+|+|+|+|||+|+|+++++....+++.++|++|||+++ .|
T Consensus 166 ~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~ 245 (651)
T 2e6k_A 166 VSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAFTEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKLDERPTLIA 245 (651)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEECCEETTEEGGGTCCSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHHSSSCEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEECCCcccccccccccCccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 9999999999999999999999999999999986667889999999999999 66
Q ss_pred -eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchh
Q 005021 301 -TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEE 379 (719)
Q Consensus 301 -~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 379 (719)
+|.+|+|.+ .++...+|+.+++.++++.++++++|+..+|.++.++...|+.. .+|......|++.+.+|...+|+.
T Consensus 246 ~~t~kg~G~~-~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~ 323 (651)
T 2e6k_A 246 VRSHIGFGSP-KQDSAKAHGEPLGPEAVEATRRNLGWPYPPFVVPEEVYRHMDMR-EKGRAWQEAWEKALEAYARAYPDL 323 (651)
T ss_dssp EECCTTTTST-TTTSGGGTSSCCHHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred EEeEeccccc-ccccccccccCCCHHHHHHHHHHcCCCcccccCChHHHHHHHHh-hhchhhHHHHHHHHHHhhhhChHH
Confidence 788999988 77788999999999999999999999888999998877777432 345556778999998888888887
Q ss_pred hhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCc
Q 005021 380 AAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERN 459 (719)
Q Consensus 380 ~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~ 459 (719)
...+.+...+++|. |...+|.| .++.++|++++++|.++++++|+++++++|+++|+++..+++..|++++||+||
T Consensus 324 ~~~~~~~~~~~~p~-~~~~~~~~---~~~~~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~p~R~ 399 (651)
T 2e6k_A 324 HQELMRRLRGELPP-LPEEPPSF---DKPIATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPLGRY 399 (651)
T ss_dssp HHHHHHHHTTCCCC-CCCSCCCC---CSCBCHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBTTCCE
T ss_pred HHHHHHHhcCcCCc-hhhhcccc---CccHHHHHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCCCCce
Confidence 76666666777776 76666666 246899999999999999999999999999987776655566778643799999
Q ss_pred cccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHc
Q 005021 460 VRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR 539 (719)
Q Consensus 460 ~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr 539 (719)
||+||+||+|+++|+|||++| |++||+++|++|++|+++|||+.|++++||+++++|+|+++|+||+|||++||+++||
T Consensus 400 i~~gIaE~~~~~~a~GlA~~G-g~~P~~~t~~~F~~~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr 478 (651)
T 2e6k_A 400 LHFGVREHAMGAILNGLNLHG-GYRAYGGTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLR 478 (651)
T ss_dssp EECCSCHHHHHHHHHHHHHHS-SCEEEEEEEGGGGGGSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHH
T ss_pred EecCcCHHHHHHHHHHHHHcC-CCEEEEEeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccccCCCcCccccHHHHHHhc
Confidence 999999999999999999998 2699999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHH
Q 005021 540 AMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEI 619 (719)
Q Consensus 540 ~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~ 619 (719)
+|||++|++|+|++|++.++++|++..++|++||++|+.+|.++.+....+++|+|.+++. +++|++||++|+++++
T Consensus 479 ~iP~l~V~~Pad~~E~~~~l~~A~~~~~~Pv~i~~~r~~~~~~~~~~~~~~~~G~~vl~~g---~~~dv~iva~G~~v~~ 555 (651)
T 2e6k_A 479 AMPNLFVIRPADAYETFYAWLVALRRKEGPTALVLTRQAVPLLSPEKARGLLRGGYVLEDV---EEPQGVLVATGSEVHL 555 (651)
T ss_dssp TSTTCEEECCSSHHHHHHHHHHHHHCCSSCEEEECCSSCBCCCCHHHHGGGGGSSEEEECC---SSCSEEEEECTTHHHH
T ss_pred CCCCcEEEecCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCCCCcchhhhhcCCCEEEeeC---CCCCEEEEEECHHHHH
Confidence 9999999999999999999999997548999999999988876543223577888766542 1489999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCceEEeeCcCCCCCCHHH
Q 005021 620 AAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGK 699 (719)
Q Consensus 620 al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~ig~d~f~~~g~~~e 699 (719)
|++|+++|+++||+++|||++|++|||++...|+++++++... +|++|++...||++++. .++|+|.|+.+|+.++
T Consensus 556 al~Aa~~L~~~Gi~~~Vv~~~~~~p~d~~~~~~~~~v~~~~~~-vv~vE~~~~~G~~~~v~---~~ig~d~f~~sg~~~~ 631 (651)
T 2e6k_A 556 ALRAQALLREKGVRVRVVSLPSFELFAAQPEAYRKEVLPPGLP-VVAVEAGASLGWERYAH---KVVALDRFGASAPYPE 631 (651)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTSC-EEEECSSCCTTGGGTCS---EEECCCSCCCSCCTTH
T ss_pred HHHHHHHHHhcCCcEEEEecCcCCccccccHHHHHHHhCcCCe-EEEEeCCccCchHHhCC---CEEEeCCCCCCCCHHH
Confidence 9999999999999999999999999999986677888887655 69999999999998874 7899999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHhC
Q 005021 700 IYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 700 l~~~~gl~~e~I~~~i~~~l 719 (719)
|+++||||+++|+++|+++|
T Consensus 632 l~~~~gl~~~~I~~~i~~~l 651 (651)
T 2e6k_A 632 VYERLGFTPERVAEAFLSLV 651 (651)
T ss_dssp HHHHTTCCHHHHHHHHHTTC
T ss_pred HHHHhCCCHHHHHHHHHHhC
Confidence 99999999999999999875
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-104 Score=920.01 Aligned_cols=570 Identities=27% Similarity=0.389 Sum_probs=486.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCC
Q 005021 85 AALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGY 164 (719)
Q Consensus 85 ~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~ 164 (719)
.+.|+++|++||.++++++.++++||+|++||++||+++||+++||+||+||+|++|||||||+||+++++|++|+++|+
T Consensus 10 ~~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~ly~~~~l~G~ 89 (616)
T 3mos_A 10 LQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILYAVWAEAGF 89 (616)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTTHHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhHHHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHHHHHHHHcCC
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccC
Q 005021 165 DSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQM 244 (719)
Q Consensus 165 ~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~ 244 (719)
+ +.++|.+|||++|.++|||++. .|++++++|++|+|++.|+|+|+|.++++. .+++|||++|||+++
T Consensus 90 ~--~~~~l~~~r~~~s~l~ghp~~~-~~~~d~~~G~lG~gl~~A~G~AlA~~~~~~---------~~~~vv~v~GDG~~~ 157 (616)
T 3mos_A 90 L--AEAELLNLRKISSDLDGHPVPK-QAFTDVATGSLGQGLGAACGMAYTGKYFDK---------ASYRVYCLLGDGELS 157 (616)
T ss_dssp S--CGGGGGGTTCTTCSCCSSCCTT-STTCSSCCCSTTCHHHHHHHHHHHHHHTSC---------CSCCEEEEEETGGGG
T ss_pred C--CHHHHHHhccCCCCCCCCCCCC-CCcccccccccCCccHHHHHHHHHHHHhCC---------CCCEEEEEECccccc
Confidence 6 8999999999998889999974 689999999999999999999999987541 258999999999999
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhh-cchhHHHHHhccCceEEEE-----------------------
Q 005021 245 EGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA-FTENVDKRFEGLGWHVIWV----------------------- 300 (719)
Q Consensus 245 eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~-~~~~~~~~~~a~G~~~~~v----------------------- 300 (719)
||++|||+++|++++|+|+++|+|||+|+|++++... ...++.++|++|||+++.|
T Consensus 158 eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~~~~P~lI~ 237 (616)
T 3mos_A 158 EGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQAKHQPTAII 237 (616)
T ss_dssp SHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSCCSSCEEEE
T ss_pred cCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhcCCCCEEEE
Confidence 9999999999999999999999999999999988653 3567899999999999988
Q ss_pred -eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchh
Q 005021 301 -TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEE 379 (719)
Q Consensus 301 -~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 379 (719)
+|.+|+|.+..++...||+.+++.++++.++++++.. ..++.. .+.+..++.
T Consensus 238 v~T~kg~G~~~~e~~~~~Hg~~~~~~~~~~~~~~~~~~-----------------~~~~~~----------~~~~~~~~~ 290 (616)
T 3mos_A 238 AKTFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYSQ-----------------IQSKKK----------ILATPPQED 290 (616)
T ss_dssp EECCTTTTSTTTTTCSSCTTCCCCHHHHHHHHHHHHHT-----------------CCCCCC----------CCCBCCCCC
T ss_pred EEEecccccccccCchhhcCCCCCHHHHHHHHHHHHHH-----------------HHhhhh----------hCcCccchh
Confidence 6889999988888889999999888877666554210 000100 000000000
Q ss_pred hhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCc
Q 005021 380 AAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERN 459 (719)
Q Consensus 380 ~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~ 459 (719)
.... .....++| ..|+|.. ..+.++|++++++|.+++++||+++++++|++++++ +..|++ +||+||
T Consensus 291 ~~~~-~~~~~~~~-----~~~~~~~-~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~-----~~~~~~-~~p~R~ 357 (616)
T 3mos_A 291 APSV-DIANIRMP-----SLPSYKV-GDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTF-----SEIFKK-EHPDRF 357 (616)
T ss_dssp CCCC-CCSCCCCS-----SCCCCCT-TCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHS-----HHHHHH-HCGGGE
T ss_pred hhhh-hhhccccC-----CCccccc-ccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCcc-----hhhHHH-hCCCCe
Confidence 0000 00011111 2345543 246889999999999999999999999999976654 245765 899999
Q ss_pred cccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHc
Q 005021 460 VRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFR 539 (719)
Q Consensus 460 ~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr 539 (719)
||+||+||+|+++|+|||+.|. .+|++.+|++|++|++|||++.|++++||+++++++|+++|+||+|||++||+++||
T Consensus 358 ~d~gIaE~~~v~~a~G~A~~G~-~~~~~~~f~~Fl~~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l~ 436 (616)
T 3mos_A 358 IECYIAEQNMVSIAVGCATRNR-TVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFR 436 (616)
T ss_dssp EECCSCHHHHHHHHHHHHGGGC-CEEEEEEEGGGGGGGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGGCBSSHHHHHH
T ss_pred EEcCccHHHHHHHHHHHHHcCC-CCEEEEehHHHHHHHHHHHHHHHHhCCCeEEEEECCCccccCCCCcccCHHHHHHhc
Confidence 9999999999999999999994 479999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCCCCCCCC--EEEEEeCHhH
Q 005021 540 AMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPD--VILIGTGSEL 617 (719)
Q Consensus 540 ~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~d--vtIva~G~~v 617 (719)
++|||+|++|+|++|++.++++|++ .++|++||++|+..|.++.. .+.+++|++.++++ |.| ++||++|+++
T Consensus 437 ~iP~l~V~~P~d~~e~~~~l~~a~~-~~gp~~ir~~r~~~p~~~~~-~~~~~~Gka~vl~e----g~d~dv~iva~G~~v 510 (616)
T 3mos_A 437 SVPTSTVFYPSDGVATEKAVELAAN-TKGICFIRTSRPENAIIYNN-NEDFQVGQAKVVLK----SKDDQVTVIGAGVTL 510 (616)
T ss_dssp TSTTEEEECCCSHHHHHHHHHHHHT-CCSEEEEECCSSCCBCCSCT-TCCCCTTCCEEEEC----CSSEEEEEECCTHHH
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHh-cCCCEEEEEeCCCCCccCCC-cccccCCeEEEEEe----CCCCCEEEEEeCHHH
Confidence 9999999999999999999999996 68999999999988876543 34578898888887 445 9999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcccccc-Cchhhh----c----CCceEEee
Q 005021 618 EIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTF-GWEKIV----G----SKGKAIGI 688 (719)
Q Consensus 618 ~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~-G~~~~~----~----~~~~~ig~ 688 (719)
+.|++|+++|+++||+++|||+++++|||++++. +++.+++.. +||+||+... |+++.+ . .++.++|+
T Consensus 511 ~~al~Aa~~L~~~Gi~v~Vidlr~l~PlD~e~i~--~~~~~~~~~-vvvvEe~~~~GG~G~~v~~~l~~~~~~~v~~~g~ 587 (616)
T 3mos_A 511 HEALAAAELLKKEKINIRVLDPFTIKPLDRKLIL--DSARATKGR-ILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAV 587 (616)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECSEEESCCHHHHH--HHHHHTTTE-EEEEEEEESTTSHHHHHHHHHTTCTTCEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCccCCCCHHHHH--HHHHhcCCE-EEEEcCCCCCcCHHHHHHHHHHhcCCCCEEEEeC
Confidence 9999999999999999999999999999999874 456666223 6999999775 565432 1 24678999
Q ss_pred CcCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 005021 689 DRFGASAPAGKIYKEFGITAEAVITAAK 716 (719)
Q Consensus 689 d~f~~~g~~~el~~~~gl~~e~I~~~i~ 716 (719)
+.|+.+|++++|+++||||+++|+++|+
T Consensus 588 ~~f~~~g~~~~l~~~~gl~~~~I~~~i~ 615 (616)
T 3mos_A 588 NRVPRSGKPAELLKMFGIDRDAIAQAVR 615 (616)
T ss_dssp CSCCCCSCHHHHHHHTTCSHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 8899999999999999999999999986
|
| >2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-93 Score=845.36 Aligned_cols=609 Identities=22% Similarity=0.255 Sum_probs=471.0
Q ss_pred ccCCcHHHHH-HHHHHHHHHHHHHHhhcC------CCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCc
Q 005021 80 ETSTDAALVE-KSVNTIRFLAVDAVEKAN------SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152 (719)
Q Consensus 80 ~~~~~~~~l~-~la~~iR~~~~~~v~~~~------~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~ 152 (719)
....+.| |+ ++|++||+++++||.+++ +||+|+++|++||+++||+++|+.+ ++| .+|| ||||+||++
T Consensus 70 ~~p~d~~-l~~~la~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~ael~~~l~~~~~~~~-~~~--~~~D-~V~~~GH~s 144 (886)
T 2qtc_A 70 EYPGNLE-LERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRAR-NEQ--DGGD-LVYFQGHIS 144 (886)
T ss_dssp CCCSCHH-HHHHHHHHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHHHHHHHHHHHTCCCC-CSS--SCCC-EEECCGGGH
T ss_pred CCCchHH-HHHHHHHHHHHHHHHHHHHhcCCCCCCccCcCCcHHHHHHHHHHHHHhcCCC-CCC--CCCC-EEEEcchhH
Confidence 3345555 66 899999999999999988 8999999999999999999988864 344 6888 999999999
Q ss_pred hHHHHHHHHhCCCCCChhHHhhhhhc--CCCCCCCCCCCCCCC-ccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCcc
Q 005021 153 MLQYALLHLAGYDSVQEDDLKNFRQW--GSKTPGHPENFETPG-IEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEI 229 (719)
Q Consensus 153 ~~~Ya~l~l~G~~~~~~~~l~~~r~~--~~~~~g~p~~~~~pg-i~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~ 229 (719)
|++|++++|+|+. +.++|++|||. ++.++|||++.++|+ ++++|||+|+|++.|+|+|+++|++..++. .+.
T Consensus 145 p~~Ya~~~l~Gr~--~~e~l~~fRq~~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~---~~~ 219 (886)
T 2qtc_A 145 PGVYARAFLEGRL--TQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGL---KDT 219 (886)
T ss_dssp HHHHHHHHHTTSS--CHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTS---CCC
T ss_pred HHHHHHHHHhCCC--CHHHHHhccCCCCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhccccc---ccC
Confidence 9999999999985 88999999995 334559999988997 999999999999999999999998654321 122
Q ss_pred CCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh--hcchhHHHHHhccCceEEE--------
Q 005021 230 VDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVIW-------- 299 (719)
Q Consensus 230 ~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~--~~~~~~~~~~~a~G~~~~~-------- 299 (719)
.+++|||++||||++||++|||+|+|++++|+|||||||||+|+||++++. ...+++.++|+++||++++
T Consensus 220 ~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~ 299 (886)
T 2qtc_A 220 SKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWD 299 (886)
T ss_dssp TTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHH
T ss_pred CCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEEEEecchhHH
Confidence 578999999999999999999999999999999999999999999999975 3567899999999999873
Q ss_pred ------------------------------------------------------------------E-------------
Q 005021 300 ------------------------------------------------------------------V------------- 300 (719)
Q Consensus 300 ------------------------------------------------------------------v------------- 300 (719)
+
T Consensus 300 ~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~ 379 (886)
T 2qtc_A 300 ELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQET 379 (886)
T ss_dssp HHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHC
T ss_pred HHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHHc
Confidence 1
Q ss_pred ---------eeeecCCCc-cccccccccCC-CCCHHHHHHHHHHcCCCCC-------CCCCcHHHHHHHHHHhhcchhHH
Q 005021 301 ---------TTTIGFGSP-NKANSYSVHGS-ALGAKEVDATRKNLGWPYE-------PFHVPEDVKKHWSRHVAEGATLE 362 (719)
Q Consensus 301 ---------~t~~g~g~~-~~~~~~~~h~~-~l~~~~~~~~~~~l~~~~~-------~~~~~~~v~~~~~~~~~~g~~~~ 362 (719)
+|+||+|.+ ..++...+|+. +++.++++.++++++||.. +|+.|.+....++....+
T Consensus 380 ~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~~~~~e~~~~~~f~~~~~~~~~~~~~~~r----- 454 (886)
T 2qtc_A 380 KGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQ----- 454 (886)
T ss_dssp CSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHHHTTCSCCHHHHTTCCCCCCCTTSHHHHHHHHH-----
T ss_pred CCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHHHHcCCCCChhhhccccccCCccchHHHHHHHHH-----
Confidence 688999975 56667889987 7888999999999999752 777765443344322111
Q ss_pred HHHHHHHhhhhhcCchhhhhhhhhhcCCCCCcccccCCCCC----CCCCcchHHHHHHHHHHHHHhhC---CceEEEecC
Q 005021 363 AEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYT----PESPAEATRNLSQTCLNALAKTL---PGLLGGSAD 435 (719)
Q Consensus 363 ~~~~~~~~~~~~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~----~~~~~~s~r~a~~~~L~~l~~~d---p~iv~~saD 435 (719)
.+.+....|.....+.. ...+|. ++.|. ......++|++|+++|.++++++ |+||++++|
T Consensus 455 ------~~~l~g~~p~~~~~~~~--~~~~p~-----~~~~~~~~~~~~~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd 521 (886)
T 2qtc_A 455 ------RQKLHGYLPSRQPNFTE--KLELPS-----LQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIAD 521 (886)
T ss_dssp ------HHHTTSCSSCCCCSCCS--CCCCCC-----GGGGHHHHSCCSSCBCHHHHHHHHHHHHTTCTTTTTTEEEEESS
T ss_pred ------HHHhcccCcchhhhhhh--cccCCc-----hhhhhhhccCCCCcchHHHHHHHHHHHHHhhcccCCcEEEEcCc
Confidence 11122122321111100 011221 11121 11245789999999999999988 999999999
Q ss_pred CCC---------CccccccccccCc----------ccCCCCCccccccccchH-H---HHHHHHHhcCCCCccEEEehhh
Q 005021 436 LAS---------SNMTLLKMFGDFQ----------KDTPEERNVRFGVREHGM-G---AICNGIALHSPGLIPYCATFFV 492 (719)
Q Consensus 436 l~~---------s~~~~~~g~~~f~----------~~~~p~R~~d~GIaE~~~-v---g~AaGlA~~G~~~~Pv~~~y~~ 492 (719)
+.. |+.+...+...|. ++.||+||||+||+||+| + ++|+|||++|.+++||+.+|++
T Consensus 522 ~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~~~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~ 601 (886)
T 2qtc_A 522 EARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSM 601 (886)
T ss_dssp CSGGGTCHHHHHHHCBBCC-----------------CBTTCCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGG
T ss_pred cccccCcccccccccccccCCcccccccchhhhhhhhcCCCceeeeccCchhhhhHHHHHHHHHHhcCCCceEEEEEehH
Confidence 542 2222222334453 247899999999999995 5 7999999999447999999999
Q ss_pred h-HHhHHHHHHHH-hhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCc-
Q 005021 493 F-TDYMRAAIRIS-ALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRP- 569 (719)
Q Consensus 493 F-~~ra~dqir~~-a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P- 569 (719)
| +||++|||+.. ++++.+|++.++..+.++|+||+|||+++|+++||+||||+|++|+|++|++.+|++|++..++|
T Consensus 602 F~~qRa~Dqi~~~~d~~~~~v~l~~~~~~~~~g~dG~tHq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~gP~ 681 (886)
T 2qtc_A 602 FGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEK 681 (886)
T ss_dssp GSHHHHHHHHHHHHHTTCCCEEEEESCSTTTSTTTCTTTCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCcccCCCCCCccCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcCCCC
Confidence 9 79999998765 89999999988666666899999999999999999999999999999999999999999755789
Q ss_pred ---EEEEEcCCC--C--CCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhC-CCcEEEEecCC
Q 005021 570 ---SILALSRQK--L--PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG-GKAVRVVSFVS 641 (719)
Q Consensus 570 ---~~irl~r~~--~--~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~-Gi~v~VId~~~ 641 (719)
++||++|++ + |.++....+.+..|.|++++.. ++++||+||++|++|++|++||++|+++ ||+++|||++|
T Consensus 682 ~e~v~i~~~r~~~~~~~p~~~~~~~~~~~gga~vlr~g~-~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a~Vvd~~s 760 (886)
T 2qtc_A 682 QENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLETIE-GSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTS 760 (886)
T ss_dssp CCCCEEEEECCSCCBCCCCCCTTCHHHHHHTCEEEEEEC-CSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSC
T ss_pred CceEEEEEeCCccccCCCCCCcchhhhccCceEEEEecC-CCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCceEEEECCc
Confidence 999999965 4 4444322233533445554310 0137999999999999999999999988 99999999999
Q ss_pred hhhHHHHHHH----------------hhhhhccCCCceEEEEcccc---ccCchhhhc-CCceEEeeCcCCCCCCHHHHH
Q 005021 642 WELFDEQSDA----------------YKESVLPAAVSARVSIEAGS---TFGWEKIVG-SKGKAIGIDRFGASAPAGKIY 701 (719)
Q Consensus 642 l~pld~~~~~----------------~~~sv~~~~~~~vvvvE~~~---~~G~~~~~~-~~~~~ig~d~f~~~g~~~el~ 701 (719)
++|||++++. |.+.+++. .. +|++|++. ..+|.+++. .++.++|+|.|+.+|++++|+
T Consensus 761 l~pLD~e~i~~~kt~rl~p~~~~~~~~~e~~l~~-~~-vVa~ed~~~g~~~~~~~~~~~~~~~~lG~D~Fg~sg~~~~L~ 838 (886)
T 2qtc_A 761 FTELARDGQDCERWNMLHPLETPRVPYIAQVMND-AP-AVASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLR 838 (886)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHCCS-SC-EEEECSSCTHHHHTTGGGCCSSCEEEECCCSCCCCCCHHHHH
T ss_pred CcccchHHHHHhhhcccCccccccHHHHHHhcCC-CC-EEEEEecccchHHHHHHHcCCCCeEEEEeCCCCCCCCHHHHH
Confidence 9999987532 44556655 34 58889853 445667776 677889999999999999999
Q ss_pred HHhCCCHHHHHHHHHHhC
Q 005021 702 KEFGITAEAVITAAKEVC 719 (719)
Q Consensus 702 ~~~gl~~e~I~~~i~~~l 719 (719)
++||||+++|+++|+++|
T Consensus 839 ~~~Gld~e~Iv~~a~~~L 856 (886)
T 2qtc_A 839 HHFEVDASYVVVAALGEL 856 (886)
T ss_dssp HHTTCSHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHH
Confidence 999999999999998753
|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-86 Score=773.18 Aligned_cols=537 Identities=23% Similarity=0.294 Sum_probs=428.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCC
Q 005021 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD 165 (719)
Q Consensus 86 ~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~ 165 (719)
+.|++++++||.++++++.+ ++||+|+++|+++++++||++ ||| +||+||+|+||++ |+|++++|+
T Consensus 28 ~~l~~l~~~iR~~~~~~~~~-~~Gh~~~~lg~v~l~~aL~~~---~~~------~~D~~v~~~GH~~---y~~~~l~G~- 93 (629)
T 2o1x_A 28 EQLPALTEELRGEIVRVCSR-GGLHLASSLGAVDIITALHYV---LDS------PRDRILFDVGHQA---YAHKILTGR- 93 (629)
T ss_dssp GGHHHHHHHHHHHHHHHHTT-SSSCHHHHHHTHHHHHHHHHH---SCT------TTSEEEESSSTTC---HHHHHTTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCcCCCchhHHHHHHHHHhh---cCC------CCCeEEecCchHH---HHHHHHhCc-
Confidence 34889999999999999987 899999999999999999986 775 7999999999999 999999994
Q ss_pred CCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccCh
Q 005021 166 SVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME 245 (719)
Q Consensus 166 ~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~e 245 (719)
.+++.++||++|++ |||++.++|++.+++|++|+|++.|+|+|+|.|+++ .+++|||++|||++++
T Consensus 94 ---~~~~~~~r~~~g~~-G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~~~----------~~~~Vv~v~GDG~~~~ 159 (629)
T 2o1x_A 94 ---RDQMADIKKEGGIS-GFTKVSESEHDAITVGHASTSLTNALGMALARDAQG----------KDFHVAAVIGDGSLTG 159 (629)
T ss_dssp ---GGGGGGTTSTTSCC-SSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHHHT----------CCCCEEEEEETTGGGS
T ss_pred ---HhHHhCcccCCCCC-CCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHHhC----------CCCeEEEEEchhhhhc
Confidence 67899999999976 999998899999999999999999999999999886 3789999999999999
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhh---cch---------------------------------h-H--
Q 005021 246 GIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA---FTE---------------------------------N-V-- 286 (719)
Q Consensus 246 G~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~---~~~---------------------------------~-~-- 286 (719)
|++|||||+|+++++ |||+|+|||+|+|+++++.. ... + +
T Consensus 160 G~~~EaL~~A~~~~~-pli~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~ 238 (629)
T 2o1x_A 160 GMALAALNTIGDMGR-KMLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRH 238 (629)
T ss_dssp HHHHHHHHHHHHHCC-SEEEEEEECSBSSSBCCSSHHHHC----------------------------------------
T ss_pred cHHHHHHHHHHhhCC-CEEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHh
Confidence 999999999999995 79999999999999987521 100 1 1
Q ss_pred ----H--HHHhccCceEE-EEeeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcch
Q 005021 287 ----D--KRFEGLGWHVI-WVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGA 359 (719)
Q Consensus 287 ----~--~~~~a~G~~~~-~v~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~ 359 (719)
. +++++|||+++ .| .|. +.+++...+++......|..+. . .+.+|+
T Consensus 239 ~~~p~~~~~~ea~G~~~~g~v---dG~----------------d~~~l~~al~~A~~~~~P~lI~------v--~t~kg~ 291 (629)
T 2o1x_A 239 FFDPASVNPFAAMGVRYVGPV---DGH----------------NVQELVWLLERLVDLDGPTILH------I--VTTKGK 291 (629)
T ss_dssp -----CCCTTGGGTCEEEEEE---ESS----------------CHHHHHHHHHHHTTSSSEEEEE------E--ECCTTT
T ss_pred hcCcccchHHHhcCCeEEeeE---CCc----------------CHHHHHHHHHHHHhcCCCEEEE------E--EEecCC
Confidence 1 34555555544 22 110 2233333333221111121110 0 112232
Q ss_pred hHHHHHHHHHhhhhhcCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCC
Q 005021 360 TLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASS 439 (719)
Q Consensus 360 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s 439 (719)
.+ .+++.+|..+|... |....... +... ...+++++|+++|.+++++||+++++++|+.++
T Consensus 292 G~---------~~~e~~~~~~H~~~-------~f~~~~~~--~~~~-~~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~ 352 (629)
T 2o1x_A 292 GL---------SYAEADPIYWHGPA-------KFDPATGE--YVPS-SAYSWSAAFGEAVTEWAKTDPRTFVVTPAMREG 352 (629)
T ss_dssp TC---------HHHHHCTTGGGSCC-------SBCTTTCC--BCCC-CCCBHHHHHHHHHHHHHHHCTTEEEEESSCTTT
T ss_pred CC---------ChhHcCCcccccCc-------cCCcCcCc--cccc-chHHHHHHHHHHHHHHhhhCcCEEEEeccccCC
Confidence 21 12234454555321 21111000 0011 146899999999999999999999999999755
Q ss_pred ccccccccccCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHH-HhhhcCCEEEEEecC
Q 005021 440 NMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHD 518 (719)
Q Consensus 440 ~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~-~a~~~~pV~~v~~~~ 518 (719)
+. +..|++ +||+||||+||+|++|+++|+|||+.| ++||+++|++|++|++|||+. .|++++||+++++++
T Consensus 353 ~~-----~~~f~~-~~~~r~~~~gIaE~~~~~~a~G~A~~G--~rp~~~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~ 424 (629)
T 2o1x_A 353 SG-----LVEFSR-VHPHRYLDVGIAEEVAVTTAAGMALQG--MRPVVAIYSTFLQRAYDQVLHDVAIEHLNVTFCIDRA 424 (629)
T ss_dssp TT-----CHHHHH-HCGGGEEECCSCHHHHHHHHHHHHHTT--CEEEEEEEHHHHGGGHHHHHHTTTTTTCCCEEEEESB
T ss_pred cC-----hHHHHH-hcCcceEeccccHHHHHHHHHHHHHcC--CEEEEEecHHHHHHHHHHHHHHHhhcCCCEEEEEECC
Confidence 32 356766 899999999999999999999999999 699999999999999999755 699999999999887
Q ss_pred CCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEe
Q 005021 519 SIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIIS 598 (719)
Q Consensus 519 g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~ 598 (719)
|+ +|+||+|||+++|+++||+|||++|++|+|++|++.++++|++ .++|++||++|+.++.++.++.+.+++|++.++
T Consensus 425 g~-~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~-~~~Pv~i~~~r~~~~~~~~~~~~~~~~G~~~~~ 502 (629)
T 2o1x_A 425 GI-VGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQT-HDGPFAIRYPRGNTAQVPAGTWPDLKWGEWERL 502 (629)
T ss_dssp BC-CCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHH-SSSCEEEECCSSBCCCCCTTCCCCCCTTCCEEE
T ss_pred cc-CCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHh-CCCCEEEEecCCCCCCCcccccccccCCceEEE
Confidence 77 6899999999999999999999999999999999999999997 589999999999876644222345889997777
Q ss_pred cCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccC-chh
Q 005021 599 DNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFG-WEK 677 (719)
Q Consensus 599 ~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G-~~~ 677 (719)
++ |.|++||++|++++.|++|+++|+ +++|||++|++|||++.+. +++.+++ .+|++|++...| |+.
T Consensus 503 ~~----g~dv~iva~G~~v~~a~~Aa~~L~----~~~Vi~~~~~~Pld~~~i~--~~~~~~~--~vv~vEe~~~~gG~g~ 570 (629)
T 2o1x_A 503 KG----GDDVVILAGGKALDYALKAAEDLP----GVGVVNARFVKPLDEEMLR--EVGGRAR--ALITVEDNTVVGGFGG 570 (629)
T ss_dssp EC----CSSEEEEECHHHHHHHHHHHTTCT----TEEEEECCEEESCCHHHHH--HHHHHCS--EEEEEEEEESSSSHHH
T ss_pred ee----CCCEEEEEecHHHHHHHHHHHHhc----CCEEEeeCCCCCCcHHHHH--HHHhhCC--cEEEEecCCCCCCHHH
Confidence 76 689999999999999999999995 8999999999999998764 3443333 369999998754 654
Q ss_pred h----h-----cCCceEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 678 I----V-----GSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 678 ~----~-----~~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
. + ..++.++|+ |.|+++|+.++|+++||+|+++|+++|++++
T Consensus 571 ~v~~~l~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~~ 622 (629)
T 2o1x_A 571 AVLEALNSMNLHPTVRVLGIPDEFQEHATAESVHARAGIDAPAIRTVLAELG 622 (629)
T ss_dssp HHHHHHHHTTCCCEEEEEEECSSCCCSCCHHHHHHHHTCSHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCeEEEeeCCcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3 2 235678999 8999999999999999999999999999864
|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-86 Score=769.10 Aligned_cols=539 Identities=20% Similarity=0.253 Sum_probs=417.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCC
Q 005021 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYD 165 (719)
Q Consensus 86 ~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~ 165 (719)
+.|++++++||.++++++.+ ++||+|+++|+++++++||+. ||| +||+||||+||++ |++++++|+
T Consensus 26 ~~l~~l~~~iR~~~~~~~~~-~~Gh~~~~lg~~~~~~~l~~~---~~~------~~D~~v~~~gH~~---y~~~~l~G~- 91 (621)
T 2o1s_A 26 ESLPKLCDELRRYLLDSVSR-SSGHFASGLGTVELTVALHYV---YNT------PFDQLIWDVGHQA---YPHKILTGR- 91 (621)
T ss_dssp GGHHHHHHHHHHHHHHHSCG-GGCTHHHHHTTHHHHHHHHHH---SCT------TTSEEEESSSTTC---HHHHHTTTT-
T ss_pred HHHHHHHHHHHHHHHHHHhh-cCCCcCCChhHHHHHHHHHhc---cCC------CCCEEEEeCchHH---HHHHHHhCC-
Confidence 44889999999999999986 799999999999999999986 775 7999999999999 999999994
Q ss_pred CCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccCh
Q 005021 166 SVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQME 245 (719)
Q Consensus 166 ~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~e 245 (719)
.++|.+|||++|+. |||++.++|++.+++|++|+|++.|+|+|+|.++++ .+++|||++|||++++
T Consensus 92 ---~~~~~~~r~~~g~~-g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~----------~~~~Vv~v~GDG~~~~ 157 (621)
T 2o1s_A 92 ---RDKIGTIRQKGGLH-PFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEG----------KNRRTVCVIGDGAITA 157 (621)
T ss_dssp ---GGGGGGTTSTTSCC-SSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHT----------SCCCEEEEEETTGGGS
T ss_pred ---HhhhhcccccCCCC-CCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhC----------CCCeEEEEEchhhhhc
Confidence 68899999999976 999998899999999999999999999999999886 3789999999999999
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhc------------------chhH---------------------
Q 005021 246 GIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAF------------------TENV--------------------- 286 (719)
Q Consensus 246 G~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~------------------~~~~--------------------- 286 (719)
|++|||||+|+++++ ||++|+|||+|+|+++++... .+++
T Consensus 158 G~~~EaL~~A~~~~~-pli~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~ 236 (621)
T 2o1s_A 158 GMAFEAMNHAGDIRP-DMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGM 236 (621)
T ss_dssp HHHHHHHHHHHHHCC-SEEEEEEECC------------------------------------------------------
T ss_pred cHHHHHHHHHHhhCC-CEEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHHhhhc
Confidence 999999999999995 799999999999998875310 0000
Q ss_pred ---HHHHhccCceEE-EEeeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHH
Q 005021 287 ---DKRFEGLGWHVI-WVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLE 362 (719)
Q Consensus 287 ---~~~~~a~G~~~~-~v~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~ 362 (719)
..+|++|||+++ .| .|. +.+++...+++......|..+. . .+.+|+..
T Consensus 237 ~~p~~~~ea~G~~~~g~v---dG~----------------d~~~l~~al~~A~~~~gP~lI~-----v---~t~kg~G~- 288 (621)
T 2o1s_A 237 VVPGTLFEELGFNYIGPV---DGH----------------DVLGLITTLKNMRDLKGPQFLH-----I---MTKKGRGY- 288 (621)
T ss_dssp --CHHHHHHTTCEEEEEE---ETT----------------CHHHHHHHHHHHHHSCSEEEEE-----E---ECCCTTCC-
T ss_pred cChhhHHHHCCCeEeeee---CCC----------------CHHHHHHHHHHHHHcCCCEEEE-----E---EEecccCC-
Confidence 478899999877 44 121 2334433333211001222110 0 11222211
Q ss_pred HHHHHHHhhhhhcCchhhhhhhhhhcCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccc
Q 005021 363 AEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMT 442 (719)
Q Consensus 363 ~~~~~~~~~~~~~~p~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~ 442 (719)
.+++.+|..+|... |.......+ ........+++++|+++|.+++++||+++++++|+.+++.
T Consensus 289 --------~~~e~~~~~~H~~~-------~f~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~- 351 (621)
T 2o1s_A 289 --------EPAEKDPITFHAVP-------KFDPSSGCL-PKSSGGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSG- 351 (621)
T ss_dssp --------CCC----------------------------------CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTT-
T ss_pred --------ChhhcCchhccCCC-------CCCCCcCcc-cccccchHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcC-
Confidence 11233333444321 111000001 0011124679999999999999999999999999965532
Q ss_pred cccccccCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHH-HhhhcCCEEEEEecCCCc
Q 005021 443 LLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRI-SALCEAGVIYVMTHDSIG 521 (719)
Q Consensus 443 ~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~-~a~~~~pV~~v~~~~g~g 521 (719)
+..|++ +||+||||+||+|++|+++|+|||+.| ++||+++|++|++|++|||+. .|++++||+++++++|+
T Consensus 352 ----~~~~~~-~~~~r~~~~gIaE~~~~~~a~G~A~~G--~rp~~~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~- 423 (621)
T 2o1s_A 352 ----MVEFSR-KFPDRYFDVAIAEQHAVTFAAGLAIGG--YKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGI- 423 (621)
T ss_dssp ----CHHHHH-HCTTTEEECCSCHHHHHHHHHHHHHTT--CEEEEEEETTGGGGGHHHHHHTTTTTTCCCEEEEESCBC-
T ss_pred ----hHHHHH-hCCCceEecCcCHHHHHHHHHHHHHCC--CEEEEEehHhHHHHHHHHHHHHHHhcCCCEEEEEECCcc-
Confidence 356766 899999999999999999999999999 699999999999999999755 69999999999988777
Q ss_pred cCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCccccccccEEEecCC
Q 005021 522 LGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNS 601 (719)
Q Consensus 522 ~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~~~~~~G~~~i~~~~ 601 (719)
+|+||+|||+++|+++||++||++|++|+|++|++.++++|++..++|++||++|+.++..+.+..+.+++|++.++++
T Consensus 424 ~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~Pv~i~~~r~~~~~~~~~~~~~~~~G~~~~~~~- 502 (621)
T 2o1s_A 424 VGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEKLPIGKGIVKRR- 502 (621)
T ss_dssp CCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCCSSCEEEECCSSBCCCCCCCCCCCCCTTCCEEEEC-
T ss_pred CCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcCCCCEEEEeCCCCCCCCCCCccccccCCceEEeec-
Confidence 6889999999999999999999999999999999999999997448999999999987654321115588999777776
Q ss_pred CCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccC-chhh--
Q 005021 602 SGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFG-WEKI-- 678 (719)
Q Consensus 602 ~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G-~~~~-- 678 (719)
|.|++||++|++++.|++| ++||+++|||++|++|||++.+. +++.+++ .+|++|++...| |+..
T Consensus 503 ---g~dv~iva~G~~~~~a~~A-----~~Gi~v~Vi~~~~~~P~d~~~i~--~~~~~~~--~vv~vEe~~~~gg~g~~v~ 570 (621)
T 2o1s_A 503 ---GEKLAILNFGTLMPEAAKV-----AESLNATLVDMRFVKPLDEALIL--EMAASHE--ALVTVEENAIMGGAGSGVN 570 (621)
T ss_dssp ---CSSEEEEEESTTHHHHHHH-----HHHHTCEEEECCEEESCCHHHHH--HHHHHCS--EEEEEEEEESTTSHHHHHH
T ss_pred ---CCCEEEEEecHHHHHHHHH-----cCCCCEEEEecCccCCCCHHHHH--HHHccCC--eEEEEECCCCCCCHHHHHH
Confidence 6899999999999999999 45899999999999999998764 3443333 369999998754 6543
Q ss_pred --h-----cCCceEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 679 --V-----GSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 679 --~-----~~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
+ ..++.++|+ |.|+++|+.++|+++||+|+++|+++|+++|
T Consensus 571 ~~l~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~g~~~~~I~~~i~~~l 619 (621)
T 2o1s_A 571 EVLMAHRKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWL 619 (621)
T ss_dssp HHHHHTTCCCCEEEEEECSSCCCCSCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEecCCcCCCCCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 2 245678999 8999999999999999999999999998864
|
| >3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-80 Score=720.16 Aligned_cols=570 Identities=18% Similarity=0.241 Sum_probs=433.5
Q ss_pred HHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCc-EEEeCCCCchHHHHHHHHhCCC-----CCC--hhH
Q 005021 100 VDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDR-FVLSAGHGCMLQYALLHLAGYD-----SVQ--EDD 171 (719)
Q Consensus 100 ~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr-~Ils~GH~~~~~Ya~l~l~G~~-----~~~--~~~ 171 (719)
.++|.++++||+|+++|+++| ++++..+++.+ +||| ||+|+||++|++|+.++|.|++ +++ .++
T Consensus 74 ~d~vk~a~sGH~G~~~g~a~i-y~~~~~~~~~~-------~rDr~fvls~GHg~p~lYa~l~l~G~~~~~~p~~s~d~e~ 145 (845)
T 3ahc_A 74 RDDVKHRLVGHWGTTPGLNFL-LAHINRLIADH-------QQNTVFIMGPGHGGPAGTSQSYVDGTYTEYYPNITKDEAG 145 (845)
T ss_dssp GGGBCSSCCSCCTTHHHHHHH-HHHHHHHHHHH-------TBCBCCEESSGGGHHHHHHHHHHHTHHHHHCTTSCSSHHH
T ss_pred HHHhhhcCCCCCCCCHHHHHH-HHHHHHhcccC-------CCceEEEECcCcHHHHHHHHHHHcCCCccccccccccHHH
Confidence 455678899999999999999 66776666653 8999 8999999999999999999973 233 578
Q ss_pred Hhh-hhhcCCC---CCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhH
Q 005021 172 LKN-FRQWGSK---TPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI 247 (719)
Q Consensus 172 l~~-~r~~~~~---~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~ 247 (719)
|++ |||+ +. ++|||.+ ++||++.+||+|||||+.|+|||+ +++ +.+|||++||||+++|.
T Consensus 146 Lk~lfrqf-s~~gg~pgHp~~-~tpGve~~tG~LGqGls~AvG~A~---------~~~-----~~~v~~~~GDGe~e~Gs 209 (845)
T 3ahc_A 146 LQKFFRQF-SYPGGIPSHFAP-ETPGSIHEGGELGYALSHAYGAVM---------NNP-----SLFVPCIIGDGEAETGP 209 (845)
T ss_dssp HHHHHHHB-TCTTSBCSSCCT-TSTTCSCCCSSTTCHHHHHHHHHT---------TCT-----TCEEEEEEETTGGGSHH
T ss_pred HHHHHHhc-cCCCCCCCCCCC-CCCCeecCCCCccchHhHHhhhhh---------cCC-----CCeEEEEECCCchhhhc
Confidence 877 7877 44 8899975 799999999999999999999994 233 68999999999999999
Q ss_pred ---HHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh--hcchhHHHHHhccCceEE-EE---------------------
Q 005021 248 ---ANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI--AFTENVDKRFEGLGWHVI-WV--------------------- 300 (719)
Q Consensus 248 ---~~EAln~A~~~~L~nli~ivddN~~sis~~~~~--~~~~~~~~~~~a~G~~~~-~v--------------------- 300 (719)
.||+.++|..++|+||++|+|+|+++|++++.. +..+++.+||++|||+++ .|
T Consensus 210 LAg~wea~~~~~~~~l~nl~~i~D~N~~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~ 289 (845)
T 3ahc_A 210 LATGWQSNKLVNPRTDGIVLPILHLNGYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFET 289 (845)
T ss_dssp HHHHGGGGGSCCTTTSCEEEEEEEECSBSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHH
T ss_pred chhhhHHhhhhhhhcCCCEEEEEECCCCcCCCCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999974 457899999999999987 22
Q ss_pred ---------------------------eeeecC-------CCccccccccccCCCCCH--HHHHHHHHHcCC--CCCC--
Q 005021 301 ---------------------------TTTIGF-------GSPNKANSYSVHGSALGA--KEVDATRKNLGW--PYEP-- 340 (719)
Q Consensus 301 ---------------------------~t~~g~-------g~~~~~~~~~~h~~~l~~--~~~~~~~~~l~~--~~~~-- 340 (719)
+|+||+ |.+ .+++..+|+.|++. ++.+.+++.++| +.+|
T Consensus 290 ~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~tgp~~~~G~~-~eg~~~~H~~pl~~~~~~~~~~~~l~~wl~~~~p~e 368 (845)
T 3ahc_A 290 IFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGKK-TEGSWRAHQVPLASARDTEEHFEVLKGWMESYKPEE 368 (845)
T ss_dssp HHHHHHHHHHHHTTCCSSCCCEEEEEEECCTTTTSCSEETTEE-CTTSGGGSSCSCTTTTTCHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHHHhccCCCCCCeEEEEECcccCCCCCCCCCcc-cCCCccccCCCCCCcccCHHHHHHHhhhccCCCchh
Confidence 566777 764 57788999999876 345555555555 4444
Q ss_pred -CCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchhhhhhhhhhcCCCCCcccccCCC---CCC--------CCCc
Q 005021 341 -FHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLPAGWEKALPT---YTP--------ESPA 408 (719)
Q Consensus 341 -~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~p~~~~~~~~~---~~~--------~~~~ 408 (719)
|++|.+++..|.....+|.. .+ ..+|... .|+++..+ .+|. |.. +..+
T Consensus 369 lF~~~~~~~~~~~~~~~~g~~----------r~-~~~P~~~-------~g~l~~~~--~lp~~~~~~~~~~~~~~~g~~~ 428 (845)
T 3ahc_A 369 LFNADGSIKDDVTAFMPKGEL----------RI-GANPNAN-------GGVIREDL--KLPELDQYEVTGVKEYGHGWGQ 428 (845)
T ss_dssp TBCTTSCBCHHHHTTSCCGGG----------ST-TTCGGGG-------GGGTCCCC--CCCCGGGGCCTHHHHHCTTEEE
T ss_pred ccCCchHHHHHHHHhCcchHh----------Hh-hhCHHhc-------CCcCcccc--CCCChHhhhccccccccCCccc
Confidence 77777666666543333330 11 1344432 12222222 1222 211 1123
Q ss_pred chHHHHHHHHHHHHHhhCCc-eEEEecCCCCCccccc--cc-----cccCc--c----cCCCCCccccccccchHHHHHH
Q 005021 409 EATRNLSQTCLNALAKTLPG-LLGGSADLASSNMTLL--KM-----FGDFQ--K----DTPEERNVRFGVREHGMGAICN 474 (719)
Q Consensus 409 ~s~r~a~~~~L~~l~~~dp~-iv~~saDl~~s~~~~~--~g-----~~~f~--~----~~~p~R~~d~GIaE~~~vg~Aa 474 (719)
...+.+++++|.++++.+|+ ++++++|+.+|+.+.. +. ..+|. . ..+.+|||+ ||+||+|+++++
T Consensus 429 ~~atra~g~~L~~l~~~~p~~~vv~sADl~~Sn~t~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~Eh~M~gia~ 507 (845)
T 3ahc_A 429 VEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRLNATYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSEHQCEGFLE 507 (845)
T ss_dssp ECTHHHHHHHHHHHHHHSTTTEEEEESSCTTTTTCGGGGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCCcEEEEecCCCccccHHHHHhhcccccccccccCCcccccCCCCcEee-eecHHHHHHHHH
Confidence 34456678999999999999 9999999998887642 22 11121 0 012289999 999999999999
Q ss_pred HHHhcCCCCccEEEehhhhH---HhHHHH----HHHH-hhh----cC-CEEEEEecCCCccCCCCCCCCChhhhh--HHc
Q 005021 475 GIALHSPGLIPYCATFFVFT---DYMRAA----IRIS-ALC----EA-GVIYVMTHDSIGLGEDGPTHQPIEHLA--SFR 539 (719)
Q Consensus 475 GlA~~G~~~~Pv~~~y~~F~---~ra~dq----ir~~-a~~----~~-pV~~v~~~~g~g~g~dG~THq~~edia--~lr 539 (719)
|||++|+ +||+.+|++|+ +||++| ||+. +++ +. +|++++||+++++|+||+|||++|++. .++
T Consensus 508 Glal~G~--~~f~~t~atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpTHQ~~e~~d~l~~~ 585 (845)
T 3ahc_A 508 AYLLTGR--HGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSLLINK 585 (845)
T ss_dssp HHHHTTC--EEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGGGCCCTHHHHHGGG
T ss_pred HHHhcCC--CCceecchhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCCCCCcHHHHHHHHh
Confidence 9999995 89999888888 799999 9998 765 45 699999999999999999999954444 444
Q ss_pred ---CCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCCCCCCc--cccccccEEEe---cCCCCCCCCEEEE
Q 005021 540 ---AMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSI--DGVEKGAYIIS---DNSSGNKPDVILI 611 (719)
Q Consensus 540 ---~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~~~~~~--~~~~~G~~~i~---~~~~~~g~dvtIv 611 (719)
.+|||+|++|+|++|+..+++.|++..+.|++++++|+++|+++..+. ..+.+|+|++. ++..++.+||+||
T Consensus 586 r~~~iPn~~V~~PaDanet~~a~~~al~~~~~~~v~v~sRq~~p~~~~~~~a~~~~~~G~~v~~~as~d~~g~~~DVvLi 665 (845)
T 3ahc_A 586 TFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQPAPTWVTLDEARAELEAGAAEWKWASNAENNDEVQVVLA 665 (845)
T ss_dssp CCTTCCCEEEEECCSHHHHHHHHHHHHHCBSCEEEEECCCSCEEECSCHHHHHHHHHHSEEECTTTCCCSSTTTCSEEEE
T ss_pred hccCCCCeEEEeCCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCccCCchhhhhhhcCCeEEEEeecccccCCCCCEEEE
Confidence 679999999999999999999999854445555559999998875321 25789999887 2200024899999
Q ss_pred EeCHhH-HHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhcc-CCCceEEEEccccc---cCchhhh----c--
Q 005021 612 GTGSEL-EIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLP-AAVSARVSIEAGST---FGWEKIV----G-- 680 (719)
Q Consensus 612 a~G~~v-~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~-~~~~~vvvvE~~~~---~G~~~~~----~-- 680 (719)
++|+++ .+|++||++|+++||+++||||.++.+++.+... ...+. ...+.+|++|++.. .|+++.+ .
T Consensus 666 AtGsev~~EAL~AA~~L~~~GI~vRVVsm~~lf~lqp~~~~--~~~ls~~~~~~l~T~e~h~i~~~gGlgsaV~ell~~r 743 (845)
T 3ahc_A 666 SAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENN--DEALTDEEFTELFTADKPVLFAYHSYAQDVRGLIYDR 743 (845)
T ss_dssp EESHHHHHHHHHHHHHHHHTTCCEEEEEECBGGGGSCTTTC--TTSCCHHHHHHHHCSSSCEEEEESSCHHHHHHHTTTS
T ss_pred EeccHHHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCcccc--ccccCHHHhCcEeecCCcceeeecCcHHHHHHHHHhC
Confidence 999775 5699999999999999999999999555443211 01111 01123578888875 4554422 1
Q ss_pred ---CCceEEeeCcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 681 ---SKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 681 ---~~~~~ig~d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
.++.++|+.+|+.+|++.+|+++||||.+.|++++++++
T Consensus 744 ~~~~~l~v~G~~d~G~tgtp~eLl~~~gld~~~Iv~~a~~~l 785 (845)
T 3ahc_A 744 PNHDNFHVVGYKEQGSTTTPFDMVRVNDMDRYALQAAALKLI 785 (845)
T ss_dssp TTGGGEEEECCCSCCCSCCHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred CCCceEEEEeccCCCCCCCHHHHHHHhCcCHHHHHHHHHHHc
Confidence 245688996699999999999999999999999998753
|
| >2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-49 Score=472.64 Aligned_cols=486 Identities=12% Similarity=0.045 Sum_probs=309.8
Q ss_pred cccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc-ChhHHHHHHHHhhhcCCC--cEEEEEeCCC
Q 005021 195 EVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLG--KLIAFYDDNH 271 (719)
Q Consensus 195 ~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~-~eG~~~EAln~A~~~~L~--nli~ivddN~ 271 (719)
.+.+||+|++++.|+|+|+|.++++..+ +..+.++||++|||++ ++|++|||||+|+.++|+ ++|+||+||+
T Consensus 317 ~~~~shlg~~~p~A~G~A~A~~~~~~~~-----~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~ 391 (933)
T 2jgd_A 317 AFNPSHLEIVSPVVIGSVRARLDRLDEP-----SSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQ 391 (933)
T ss_dssp CCCCSSTTCHHHHHHHHHHHHHTTSSSC-----CGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC
T ss_pred cccCcccccccCHHHHHHHHHHhhcccc-----CCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 3678999999999999999999874221 1147899999999998 999999999999999984 2788888999
Q ss_pred CCccc-chhh-hcchhHHHHHhccCceEEEEe-----------------eeecCCCcccc-ccccccCCCCCH-------
Q 005021 272 ISIDG-DTEI-AFTENVDKRFEGLGWHVIWVT-----------------TTIGFGSPNKA-NSYSVHGSALGA------- 324 (719)
Q Consensus 272 ~sis~-~~~~-~~~~~~~~~~~a~G~~~~~v~-----------------t~~g~g~~~~~-~~~~~h~~~l~~------- 324 (719)
|+|++ +++. .....+.+++++|||+++.|+ .+.+.+|.+.+ ...+.+|+...+
T Consensus 392 ~~ist~~~~~~~~~~~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~~yr~~ 471 (933)
T 2jgd_A 392 VGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQP 471 (933)
T ss_dssp ---------------CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-----------CC
T ss_pred ccccCCCHHhcccchhHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccchhhCCH
Confidence 99999 7764 334567888999999999881 12344555443 234444443222
Q ss_pred HHHHHHHHHcCCCCCCCCCcHHHHHHHHH-Hhhcch-------hHHHHHHHHHh-hhh--hc-Cc-----hhhhhhhh--
Q 005021 325 KEVDATRKNLGWPYEPFHVPEDVKKHWSR-HVAEGA-------TLEAEWNAKFA-EYE--KK-YP-----EEAAEFKS-- 385 (719)
Q Consensus 325 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-~~~~g~-------~~~~~~~~~~~-~~~--~~-~p-----~~~~~~~~-- 385 (719)
++++.+++ . .+ .+..|++ +..+|. .+.+++.+.+. +|+ +. .| ..++.+..
T Consensus 472 ~e~~~~~~-~---~d-------Pi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~~~~~~~~~~~ 540 (933)
T 2jgd_A 472 LMYQKIKK-H---PT-------PRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHE 540 (933)
T ss_dssp TTHHHHHT-S---CC-------HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGGCTTGGGSSCC
T ss_pred HHHHHHHc-c---CC-------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccccccc
Confidence 12222221 0 11 2334433 223332 12222222221 122 11 11 12222110
Q ss_pred ----hhcCCCCCcc----c---ccCC-CCCC----------------CCCcchHHHHHHHHHHHHHhhCCceEEEecCCC
Q 005021 386 ----ISSGQLPAGW----E---KALP-TYTP----------------ESPAEATRNLSQTCLNALAKTLPGLLGGSADLA 437 (719)
Q Consensus 386 ----~~~g~~p~~~----~---~~~~-~~~~----------------~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~ 437 (719)
..+|. +... . ...| .|.. +....++..+++.+|.+++++|++|+++++|++
T Consensus 541 ~~~~~~tg~-~~~~l~~i~~~~~~~p~~~~~~~~v~~~~~~R~~~~~~~~~~dw~~~e~~al~~l~~~~~~V~~~g~Dv~ 619 (933)
T 2jgd_A 541 WDEEYPNKV-EMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSG 619 (933)
T ss_dssp TTCCCCCCC-CHHHHHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHHTTTCCEEEEETTTT
T ss_pred cccCCCCCC-CHHHHHHHHhhhcCCCCCCcccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCEEEECCccC
Confidence 00000 0000 0 0001 1110 011234456778899999999999999999998
Q ss_pred CCccc-------------cccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCc--cEEE-ehhhhHH---hH
Q 005021 438 SSNMT-------------LLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLI--PYCA-TFFVFTD---YM 497 (719)
Q Consensus 438 ~s~~~-------------~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~--Pv~~-~y~~F~~---ra 497 (719)
.+++. .+.++..|.+ +| |+||+|+||+|++++|+|+|||+.|. + ||+. +|++|++ |+
T Consensus 620 ~gTfs~rh~v~~d~~~g~~~~~l~~l~~-~~gp~rv~ds~IaE~~~vg~a~G~A~~G~--~~lpv~e~qf~dF~~~AQra 696 (933)
T 2jgd_A 620 RGTFFHRHAVIHNQSNGSTYTPLQHIHN-GQGAFRVWDSVLSEEAVLAFEYGYATAEP--RTLTIWEAQFGDFANGAQVV 696 (933)
T ss_dssp TCTTSCCCCSEECSSSSCEECGGGCSCT-TCCCEEEECCCSCHHHHHHHHHHHHHHCT--TSEEEEEC-CGGGGGGGHHH
T ss_pred CcchhhhhhhcccccCCceeechHHHHH-HcCCCeEEECCcCHHHHHHHHHHHHhcCC--CCCCEEEEEEhhhhcccHHH
Confidence 76432 2345677876 89 99999999999999999999999994 6 9885 8999997 99
Q ss_pred HHHHHH-H-h--hhcCCEEEEEecCCCccCCCCCCCCC--hhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHH-HcCCCcE
Q 005021 498 RAAIRI-S-A--LCEAGVIYVMTHDSIGLGEDGPTHQP--IEHLASFRAMPNILMLRPADGNETAGAYKVAV-ANRKRPS 570 (719)
Q Consensus 498 ~dqir~-~-a--~~~~pV~~v~~~~g~g~g~dG~THq~--~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~-~~~~~P~ 570 (719)
+|||+. . | .+++||++++.| | ++..|++||+ +|++..++++|||+|++|+|+.|++.+|++++ +..++|+
T Consensus 697 ~DQii~~~~ak~~~~~~vv~~l~~-G--~~g~G~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pv 773 (933)
T 2jgd_A 697 IDQFISSGEQKWGRMCGLVMLLPH-G--YEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPL 773 (933)
T ss_dssp HHHTTTTHHHHHCCCCCCEEEEEC-C--CSSSCTTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHHSSCCCCE
T ss_pred HHHHHHHHHHHHccCCCEEEEEeC-C--CCCCCcccccchHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHhcCCCcE
Confidence 999874 4 5 369999999966 3 2335999998 56555556779999999999999999999985 4348999
Q ss_pred EEEEcCCCCCC---CC-----CCCccccccccEEEecCCCCCCCCE--EEEEeCHhHHHHHHHHHHHHhCCCcEEEEecC
Q 005021 571 ILALSRQKLPH---LA-----GTSIDGVEKGAYIISDNSSGNKPDV--ILIGTGSELEIAAKAAEELRKGGKAVRVVSFV 640 (719)
Q Consensus 571 ~irl~r~~~~~---~~-----~~~~~~~~~G~~~i~~~~~~~g~dv--tIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~ 640 (719)
+||+||..+.. ++ .+....+++|++.+++ |.|| +|+++|.+...+++|+++|+++ +++|||++
T Consensus 774 ii~~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~-----g~dV~~vI~~~G~v~~~l~aa~~~l~~~--~v~VIdl~ 846 (933)
T 2jgd_A 774 VVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD-----PKGVKRVVMCSGKVYYDLLEQRRKNNQH--DVAIVRIE 846 (933)
T ss_dssp EEEECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC-----GGGCCEEEEECTTHHHHHHHHHHHTTCC--SEEEEEEC
T ss_pred EEEecchhccCCCCcCCccccCCCceeecCCcceEee-----cCcceEEEEEchHHHHHHHHHHHHcccC--CeEEEEee
Confidence 99999865321 11 0012335567665544 4688 5666666656566666888654 89999999
Q ss_pred ChhhHHHHHHHhhhhhccCCC-ceEEEEcccccc-Cchhhhc----------CCceEEee-CcCCC-CCCHHHHHHHhCC
Q 005021 641 SWELFDEQSDAYKESVLPAAV-SARVSIEAGSTF-GWEKIVG----------SKGKAIGI-DRFGA-SAPAGKIYKEFGI 706 (719)
Q Consensus 641 ~l~pld~~~~~~~~sv~~~~~-~~vvvvE~~~~~-G~~~~~~----------~~~~~ig~-d~f~~-~g~~~el~~~~gl 706 (719)
+++|||.+.+. +++.+++. ..+|++||+... |+++++. .++.++|. |.|.+ .|.. +.+-.
T Consensus 847 ~l~Pld~e~i~--~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~~~~~~~~~v~~vg~~d~~~pa~g~~----~~h~~ 920 (933)
T 2jgd_A 847 QLYPFPHKAMQ--EVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGHM----SVHQK 920 (933)
T ss_dssp EEESCCHHHHH--HHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSCTTCEEEEEEECCCSSSSCSCH----HHHHH
T ss_pred ccCCCCHHHHH--HHHHhCCCCceEEEEecCCCcCCHHHHHHHHHHHhcccCCceEEEecCCcCCCCcCCH----HHHHH
Confidence 99999999764 45655542 146999998875 5544321 24567999 78876 4432 33334
Q ss_pred CHHHHHHHHH
Q 005021 707 TAEAVITAAK 716 (719)
Q Consensus 707 ~~e~I~~~i~ 716 (719)
..+.|++++.
T Consensus 921 ~~~~i~~~a~ 930 (933)
T 2jgd_A 921 QQQDLVNDAL 930 (933)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5677877764
|
| >2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-49 Score=467.48 Aligned_cols=483 Identities=14% Similarity=0.095 Sum_probs=309.5
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc-ChhHHHHHHHHhhhcCCC--cEEEEEeCCCC
Q 005021 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLG--KLIAFYDDNHI 272 (719)
Q Consensus 196 ~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~-~eG~~~EAln~A~~~~L~--nli~ivddN~~ 272 (719)
..+||+|++++.|+|+|+|.++++...++++....+.++||++|||++ +||.+|||||+|+.|+|+ |+|+||+||++
T Consensus 242 ~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~ 321 (868)
T 2yic_A 242 ANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQI 321 (868)
T ss_dssp CCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSC
T ss_pred CCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCc
Confidence 457899999999999999999875322221112246899999999995 899999999999999998 89999999999
Q ss_pred Ccccchhh-hcchhHHHHHhccCceEEEEe-----------------eeecCCCcccc-ccccccCCCCC-HHHH-HH-H
Q 005021 273 SIDGDTEI-AFTENVDKRFEGLGWHVIWVT-----------------TTIGFGSPNKA-NSYSVHGSALG-AKEV-DA-T 330 (719)
Q Consensus 273 sis~~~~~-~~~~~~~~~~~a~G~~~~~v~-----------------t~~g~g~~~~~-~~~~~h~~~l~-~~~~-~~-~ 330 (719)
++++++.. .......+++++|||+++.|+ .+.+.+|.+++ .+++.+|+... +..+ +. .
T Consensus 322 g~st~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p~~~~p~~ 401 (868)
T 2yic_A 322 GFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYM 401 (868)
T ss_dssp BTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTCHHH
T ss_pred ccccCccccccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCcccccccCChHH
Confidence 99997653 223446678999999999981 12355666554 23344443221 1111 10 1
Q ss_pred HHHcCCCCCCCCCcHHHHHHHHH-Hhhcch-------hHHHHHHHHHhh-h--hh---c-CchhhhhhhhhhcC--CCCC
Q 005021 331 RKNLGWPYEPFHVPEDVKKHWSR-HVAEGA-------TLEAEWNAKFAE-Y--EK---K-YPEEAAEFKSISSG--QLPA 393 (719)
Q Consensus 331 ~~~l~~~~~~~~~~~~v~~~~~~-~~~~g~-------~~~~~~~~~~~~-~--~~---~-~p~~~~~~~~~~~g--~~p~ 393 (719)
.++.....+| +..|++ +..+|- .+.++..+.+.+ + ++ + .|..+..+.....+ ..+.
T Consensus 402 ~~~~~~~~dP-------i~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~p~~~~~~~~~~~~~~~~~~~~t 474 (868)
T 2yic_A 402 YDVIDTKRGS-------RKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQIPSKLAT 474 (868)
T ss_dssp HHHHTTCCCH-------HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCC
T ss_pred HHHHHhCCCH-------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccCCCC
Confidence 1111111222 222322 112221 111111111110 0 00 1 11001000000000 0000
Q ss_pred c------------ccccCCCCCCCCC---cchHHH----------HHHHHH--HHHHhhCCceEEEecCCCCCccc----
Q 005021 394 G------------WEKALPTYTPESP---AEATRN----------LSQTCL--NALAKTLPGLLGGSADLASSNMT---- 442 (719)
Q Consensus 394 ~------------~~~~~~~~~~~~~---~~s~r~----------a~~~~L--~~l~~~dp~iv~~saDl~~s~~~---- 442 (719)
. .....+.|..... ....|. +++++| ..|++++++|+++++|++.+++.
T Consensus 475 ~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~~~i~~a~~e~la~~~l~~~~~~V~~~G~Dv~~~Tfs~rh~ 554 (868)
T 2yic_A 475 AVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHA 554 (868)
T ss_dssp CCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCEEEEEETTTTTCTTSCCCS
T ss_pred ccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCCEEEEcCcCCccchhhcch
Confidence 0 0000112221111 012232 344443 36689999999999999876441
Q ss_pred ---------cccccccC------cccCCCCCccccccccchHHHHHHHHHhcCCCCccEE-EehhhhHHhH---HHHHHH
Q 005021 443 ---------LLKMFGDF------QKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFTDYM---RAAIRI 503 (719)
Q Consensus 443 ---------~~~g~~~f------~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~-~~y~~F~~ra---~dqir~ 503 (719)
.+..+..| +++.+|+||+|+||+|++++|+|+|||+.|...+|++ ++|++|++++ +||++.
T Consensus 555 v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~eaqf~dF~~~AQ~~~DQ~i~ 634 (868)
T 2yic_A 555 VIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFIS 634 (868)
T ss_dssp SEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTT
T ss_pred hccccCCCceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHccCCCCceEEEEehHHHHhhHHHHHHHHHH
Confidence 12334556 5547899999999999999999999999994224444 6899999987 999876
Q ss_pred Hh----hhcCCEEEEEecCCCccCCCCCCCCC--hhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc-CCCcEEEEEcC
Q 005021 504 SA----LCEAGVIYVMTHDSIGLGEDGPTHQP--IEHLASFRAMPNILMLRPADGNETAGAYKVAVAN-RKRPSILALSR 576 (719)
Q Consensus 504 ~a----~~~~pV~~v~~~~g~g~g~dG~THq~--~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~-~~~P~~irl~r 576 (719)
.+ ++++||++++.|.+ .| +||+|++ +|++..|+++|||+|++|+|+.|++.+|+.++.. .++|++|++||
T Consensus 635 ~~~~k~~~~~~vvi~~p~G~--~G-~Gp~Hs~~~~E~~l~l~~~pnm~V~~Ps~p~~~~~lLr~a~~~~~~~Pvii~~pk 711 (868)
T 2yic_A 635 SGEAKWGQLSDVVLLLPHGH--EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPK 711 (868)
T ss_dssp THHHHHCCCCCCEEEEECCC--SS-SCTTSSCCCHHHHHHHCCTTSCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECS
T ss_pred HHHHHhCCCCCEEEEecCCC--CC-CChhhcCCcHHHHHhcCCCCCCEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEech
Confidence 43 46999999997654 56 9999997 7888888999999999999999999999998864 24999999998
Q ss_pred CCCCC---CCC-----CCccccccccEEE---ecCCCCCCCCE--EEEEeCHhHHHHHHHHHHHHhCC-CcEEEEecCCh
Q 005021 577 QKLPH---LAG-----TSIDGVEKGAYII---SDNSSGNKPDV--ILIGTGSELEIAAKAAEELRKGG-KAVRVVSFVSW 642 (719)
Q Consensus 577 ~~~~~---~~~-----~~~~~~~~G~~~i---~~~~~~~g~dv--tIva~G~~v~~al~Aa~~L~~~G-i~v~VId~~~l 642 (719)
.-+.. .+. +.....++|++.+ +++ |.|| |||++|.+ ..++++++ +++| ++++|||+++|
T Consensus 712 ~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~----g~dv~r~Ii~~G~~-~~~l~aa~--~~~g~i~v~VIdl~~l 784 (868)
T 2yic_A 712 SMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGD----RNKVTRLLLTSGKI-YYELAARK--AKENREDVAIVRIEQL 784 (868)
T ss_dssp GGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCC----GGGCCEEEEECSTH-HHHHHHHH--HHHTCTTEEEEEECEE
T ss_pred HHhCCCCCCCCccccCCCCceecCCcceeeccccc----CCceeEEEEEecHH-HHHHHHHH--HhCCCCCEEEEEeeec
Confidence 63321 100 0011125677665 344 6899 99999998 67777766 5678 99999999999
Q ss_pred hhHHHHHHHhhhhhccCCCc-eEEEEccccc-cCchhhh-----------cCCceEEee-CcCCCC-CCH
Q 005021 643 ELFDEQSDAYKESVLPAAVS-ARVSIEAGST-FGWEKIV-----------GSKGKAIGI-DRFGAS-APA 697 (719)
Q Consensus 643 ~pld~~~~~~~~sv~~~~~~-~vvvvE~~~~-~G~~~~~-----------~~~~~~ig~-d~f~~~-g~~ 697 (719)
+|||.+++. +++.+++.. -+|++||+.. .|+++++ ..++.++|. |.|.+. |..
T Consensus 785 ~Pld~~~i~--~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e~~~~l~~~v~~vg~~d~~~p~~g~~ 852 (868)
T 2yic_A 785 APLPRRRLA--ETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEILPDHFTGLKRISRRAMSAPSSGSS 852 (868)
T ss_dssp ESCCHHHHH--HHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHHHCHHHHTTCEEEEECCCSSSSCSCH
T ss_pred CCCCHHHHH--HHHHhcCCCceEEEEEeCCCCCCcHHHHHHHHHHHhhhcCCCeEEeccCCcCCCCCCCH
Confidence 999999875 567666541 1477777766 4544321 246778999 788774 443
|
| >2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-50 Score=434.97 Aligned_cols=291 Identities=13% Similarity=0.078 Sum_probs=245.5
Q ss_pred CcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCcc
Q 005021 407 PAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIP 485 (719)
Q Consensus 407 ~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~P 485 (719)
.+.++|++++++|.+++++||+++++++|++. +.+ ++.+..|++ +| |+||||+||+|++|+++|+|||++| ++|
T Consensus 19 ~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~-~gt-~~~~~~~~~-~~gp~r~~~~gIaE~~~v~~a~G~A~~G--~rp 93 (342)
T 2bfd_B 19 QKMNLFQSVTSALDNSLAKDPTAVIFGEDVAF-GGV-FRCTVGLRD-KYGKDRVFNTPLCEQGIVGFGIGIAVTG--ATA 93 (342)
T ss_dssp EEECHHHHHHHHHHHHHHHCTTCEEEETTTTT-TCT-TSTTTTHHH-HHCTTTEEECCSCHHHHHHHHHHHHHTT--CCE
T ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEcCccCC-Ccc-cchHHHHHH-HhCCCeEEEcCcCHHHHHHHHHHHHHCC--Cee
Confidence 45789999999999999999999999999973 222 234566866 79 9999999999999999999999999 699
Q ss_pred EEE-ehhhhHHhHHHHHHH-HhhhcC---------CEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHH
Q 005021 486 YCA-TFFVFTDYMRAAIRI-SALCEA---------GVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNE 554 (719)
Q Consensus 486 v~~-~y~~F~~ra~dqir~-~a~~~~---------pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e 554 (719)
|++ +|++|++|++|||++ .|+++. ||+++++++| +.||+|||+++|+++||++||++|++|+|++|
T Consensus 94 ~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g---~~~G~th~~~~d~~~l~~iP~l~V~~Psd~~e 170 (342)
T 2bfd_B 94 IAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC---VGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQ 170 (342)
T ss_dssp EEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESC---CSSCGGGSSCCCHHHHHTSTTCEEECCSSHHH
T ss_pred EEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCC---CCCCcchhhHhHHHHHhcCCCcEEEeeCCHHH
Confidence 996 799999999999985 575544 9999997764 35899999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEc----CCCCCCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhC
Q 005021 555 TAGAYKVAVANRKRPSILALS----RQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG 630 (719)
Q Consensus 555 ~~~~l~~a~~~~~~P~~irl~----r~~~~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~ 630 (719)
++.++++|++ .++|++||++ |+..+.++.+ .+.+++|++.++++ |.|++||++|++++.|++|+++|+++
T Consensus 171 ~~~~l~~a~~-~~~Pv~i~~p~~l~r~~~~~~~~~-~~~~~~G~~~v~~~----g~dv~iia~G~~~~~a~~Aa~~L~~~ 244 (342)
T 2bfd_B 171 AKGLLLSCIE-DKNPCIFFEPKILYRAAAEEVPIE-PYNIPLSQAEVIQE----GSDVTLVAWGTQVHVIREVASMAKEK 244 (342)
T ss_dssp HHHHHHHHHH-SSSCEEEEEEGGGTTSCCEEEESS-CCCCCSSCCEEEEC----CSSEEEEECTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCCcEEEEecchhcCCCCCCCCCc-ccceeCCceEEecc----CCCEEEEEECHHHHHHHHHHHHHHhh
Confidence 9999999997 5999999887 4433434332 23478898877776 68999999999999999999999998
Q ss_pred -CCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcccc-ccCchhhh------------cCCceEEee-CcCCCCC
Q 005021 631 -GKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGS-TFGWEKIV------------GSKGKAIGI-DRFGASA 695 (719)
Q Consensus 631 -Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~-~~G~~~~~------------~~~~~~ig~-d~f~~~g 695 (719)
|++++|||+++++|||++.+. +++.+++ . +|++|++. ..||++.+ ..++.++|+ |.|++++
T Consensus 245 ~Gi~v~vi~~~~l~P~d~~~i~--~~~~~~~-~-vv~vEe~~~~gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~ 320 (342)
T 2bfd_B 245 LGVSCEVIDLRTIIPWDVDTIC--KSVIKTG-R-LLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHI 320 (342)
T ss_dssp HCCCEEEEECCEEESCCHHHHH--HHHHHHS-C-EEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST
T ss_pred cCCCEEEEeeeecCCCCHHHHH--HHHhcCC-E-EEEEEeCccCCcHHHHHHHHHHhhCccccCCCeEEEecCCCCChHH
Confidence 999999999999999998753 4555554 3 58999986 46786532 135678999 6788776
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 696 PAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 696 ~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
|+++||+|+++|+++|++++
T Consensus 321 ----l~~~~gl~~~~I~~~i~~~l 340 (342)
T 2bfd_B 321 ----FEPFYIPDKWKCYDALRKMI 340 (342)
T ss_dssp ----THHHHSCCHHHHHHHHHHHH
T ss_pred ----HHHHHCcCHHHHHHHHHHHh
Confidence 99999999999999998864
|
| >1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-50 Score=437.95 Aligned_cols=289 Identities=17% Similarity=0.143 Sum_probs=216.1
Q ss_pred cchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCccE
Q 005021 408 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPY 486 (719)
Q Consensus 408 ~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv 486 (719)
..++|++++++|.+++++||+|+++++|++.++.+ +..+..|++ +| |+||||+||+|++|+++|+|||+.| ++||
T Consensus 50 ~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~-~~~~~~~~~-~~gp~r~~d~gIaE~~~v~~a~G~A~~G--~rpv 125 (369)
T 1ik6_A 50 MANMAKAINMALHEEMERDERVVVLGEDVGKKGGV-FLVTEGLYE-RFGPERVIDTPLNEGGILGFAMGMAMAG--LKPV 125 (369)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEEC----------CTTTTHHH-HHCTTTEEECCSCHHHHHHHHHHHHHTT--CEEE
T ss_pred cccHHHHHHHHHHHHHccCCCEEEECCcccccCCc-chhHHHHHH-HhCCCcEEECcccHHHHHHHHHHHHHCC--CeeE
Confidence 46799999999999999999999999999744332 133456766 79 9999999999999999999999999 6999
Q ss_pred EE-ehhhhHHhHHHHHHH-Hhhh--------cCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHH
Q 005021 487 CA-TFFVFTDYMRAAIRI-SALC--------EAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETA 556 (719)
Q Consensus 487 ~~-~y~~F~~ra~dqir~-~a~~--------~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~ 556 (719)
++ +|++|++|++|||++ .|++ ++||+++++++|. .| ||+|||+.+ +++||++|||+|++|+|++|++
T Consensus 126 ~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~-~g-~g~~hs~~~-~a~l~~iPnl~V~~Psd~~e~~ 202 (369)
T 1ik6_A 126 AEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSG-TR-GGLYHSNSP-EAIFVHTPGLVVVMPSTPYNAK 202 (369)
T ss_dssp EECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC-------------H-HHHHHTCTTCEEECCCSHHHHH
T ss_pred EEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCC-CC-CCccccccH-HHHHcCCCCcEEEecCCHHHHH
Confidence 97 699999999999987 5877 9999999987773 45 788777665 6999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCCC----CCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCC
Q 005021 557 GAYKVAVANRKRPSILALSRQKLP----HLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGK 632 (719)
Q Consensus 557 ~~l~~a~~~~~~P~~irl~r~~~~----~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi 632 (719)
.+|++|++ .++|++||+||.... .++.+ ...+++|++.++++ |.|++||++|++++.|++|+++|+ |
T Consensus 203 ~ll~~A~~-~~~Pv~i~~p~~l~r~~~~~v~~~-~~~~~~G~~~v~~~----g~dv~Iia~G~~v~~a~~Aa~~L~--G- 273 (369)
T 1ik6_A 203 GLLKAAIR-GDDPVVFLEPKILYRAPREEVPEG-DYVVEIGKARVARE----GDDVTLVTYGAVVHKALEAAERVK--A- 273 (369)
T ss_dssp HHHHHHHH-SSSCEEEEEEGGGSSCCCEEEECS-SCCCCTTCCEEEEC----CSSEEEEECTTHHHHHHHHHHTSS--S-
T ss_pred HHHHHHHh-CCCCEEEEEehhhhccCCCCcCCC-cccccCCceEEEEc----CCCEEEEEeCHHHHHHHHHHHHhC--C-
Confidence 99999997 799999998875432 22222 23478899877776 689999999999999999999996 8
Q ss_pred cEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc-cCchhh----h--------cCCceEEee-CcCCCCCCHH
Q 005021 633 AVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKI----V--------GSKGKAIGI-DRFGASAPAG 698 (719)
Q Consensus 633 ~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~-~G~~~~----~--------~~~~~~ig~-d~f~~~g~~~ 698 (719)
+++|||++|++|||++.+. +++.+++ . +|++||+.. .||++. + ..++.++|+ |.|+++|+
T Consensus 274 ~v~Vi~~~~l~P~d~~~i~--~~~~~~~-~-vvvvEe~~~~GG~g~~v~~~l~~~~~~~l~~pv~~vg~~d~~~~~~~-- 347 (369)
T 1ik6_A 274 SVEVVDLQTLNPLDFDTVL--KSVSKTG-R-LIIAHDSPKTGGLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPIA-- 347 (369)
T ss_dssp CEEEEECCEEETTCHHHHH--HHHHHHC-C-EEEEEEEESTTSHHHHHHHHHHHHSGGGCSSCCEEEEECCCC-------
T ss_pred CeEEEeeeecCCCCHHHHH--HHHhccC-e-EEEEecCCcCCcHHHHHHHHHHhhCccccCCCeEEEcCCCcCCCCHH--
Confidence 9999999999999999753 5666655 3 588899975 667642 2 135678999 89999987
Q ss_pred HHHHHhCCCHHHHHHHHHHhC
Q 005021 699 KIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 699 el~~~~gl~~e~I~~~i~~~l 719 (719)
|++++|||+++|+++|+++|
T Consensus 348 -l~~~~gl~~~~I~~~i~~~l 367 (369)
T 1ik6_A 348 -ADAAYAPTVERIIKAIEYVM 367 (369)
T ss_dssp --------CHHHHHHHHHHHH
T ss_pred -HHHHhCcCHHHHHHHHHHHh
Confidence 99999999999999999864
|
| >2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=431.04 Aligned_cols=293 Identities=16% Similarity=0.174 Sum_probs=246.6
Q ss_pred CCcchHHHHHHHHHHHHHhhCCceEEEecCCCC--CccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCC
Q 005021 406 SPAEATRNLSQTCLNALAKTLPGLLGGSADLAS--SNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPG 482 (719)
Q Consensus 406 ~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~--s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~ 482 (719)
+...++|++++++|.+++++||+|+++++|++. ++++. +..|++ +| |+||||+||+|++|+++|+|||+.|
T Consensus 12 ~~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~---~~~~~~-~~gp~r~~d~gIaE~~~v~~a~G~A~~G-- 85 (341)
T 2ozl_B 12 SLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKV---SRGLWK-KYGDKRIIDTPISEMGFAGIAVGAAMAG-- 85 (341)
T ss_dssp CCEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTST---TTTHHH-HHCTTTEEECCSCHHHHHHHHHHHHHTT--
T ss_pred cccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchh---HHHHHH-HhCCCcEEECchhHHHHHHHHHHHHHCC--
Confidence 345789999999999999999999999999974 33322 345766 89 9999999999999999999999999
Q ss_pred CccEEE-ehhhhHHhHHHHHHHH-h---h-----hcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCH
Q 005021 483 LIPYCA-TFFVFTDYMRAAIRIS-A---L-----CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADG 552 (719)
Q Consensus 483 ~~Pv~~-~y~~F~~ra~dqir~~-a---~-----~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~ 552 (719)
++||++ +|++|++|++|||++. | | +++||++++++ | ++|+||+|||...| ++||++|||+|++|+|+
T Consensus 86 ~rp~~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G-~~g~~G~tHs~~~e-a~l~~iP~l~V~~Psd~ 162 (341)
T 2ozl_B 86 LRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-G-ASAGVAAQHSQCFA-AWYGHCPGLKVVSPWNS 162 (341)
T ss_dssp CEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-S-CCSSCCGGGCCCCH-HHHHTSTTCEEECCCSH
T ss_pred CEEEEEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-c-CCCCCCcchhhHHH-HHhccCCCCEEEEeCCH
Confidence 699998 7999999999999975 6 3 89999999986 5 57889999944445 99999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEcCCC------C-CCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHH
Q 005021 553 NETAGAYKVAVANRKRPSILALSRQK------L-PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAE 625 (719)
Q Consensus 553 ~e~~~~l~~a~~~~~~P~~irl~r~~------~-~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~ 625 (719)
+|++.++++|++ .++|++||++|+. + |.+++ ..+.+++|++.++++ |.|++||++|+++..|++|++
T Consensus 163 ~e~~~~l~~a~~-~~~Pv~i~~~~~~~~~~~~v~p~~~~-~~~~~~~Gk~~v~~~----g~dv~iia~Gs~~~~a~~Aa~ 236 (341)
T 2ozl_B 163 EDAKGLIKSAIR-DNNPVVVLENELMYGVPFEFPPEAQS-KDFLIPIGKAKIERQ----GTHITVVSHSRPVGHCLEAAA 236 (341)
T ss_dssp HHHHHHHHHHHH-SSSCEEEEECHHHHTCEEECCHHHHS-TTCCCCTTCCEEEEC----CSSEEEEECSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCEEEEEChhhhcCCCCcCCccCC-ccccccCCceEEecc----CCCEEEEEeCHHHHHHHHHHH
Confidence 999999999997 5899999999753 2 11122 234578898877776 689999999999999999999
Q ss_pred HHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc-cCchhh----h---------cCCceEEee-Cc
Q 005021 626 ELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKI----V---------GSKGKAIGI-DR 690 (719)
Q Consensus 626 ~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~-~G~~~~----~---------~~~~~~ig~-d~ 690 (719)
+|+++|++++|||+++++|||++.+. +.+.+.+ . +|++|++.. .||++. + ..++.++|+ |.
T Consensus 237 ~L~~~Gi~v~vv~~~~l~P~d~~~i~--~~~~~~~-~-vv~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ig~~d~ 312 (341)
T 2ozl_B 237 VLSKEGVECEVINMRTIRPMDMETIE--ASVMKTN-H-LVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADV 312 (341)
T ss_dssp HHHTTTCCEEEEECCEEETCCHHHHH--HHHHHHS-C-EEEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCSS
T ss_pred HHHhcCCCeEEEeeeeecCCCHHHHH--HHHhcCC-e-EEEEecCcccCcHHHHHHHHHHhhhcccccCCCEEEEecCCc
Confidence 99999999999999999999998753 4454443 3 699999985 667652 1 235678999 89
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 691 FGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 691 f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
|+++|+ +|++++|+|+++|+++|++++
T Consensus 313 ~~~~g~--~l~~~~g~~~~~I~~~i~~~l 339 (341)
T 2ozl_B 313 PMPYAK--ILEDNSIPQVKDIIFAIKKTL 339 (341)
T ss_dssp CCCSSH--HHHHTTSCCHHHHHHHHHHHH
T ss_pred CCCCcH--HHHHHhCcCHHHHHHHHHHHh
Confidence 999986 799999999999999998864
|
| >1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=427.39 Aligned_cols=291 Identities=19% Similarity=0.158 Sum_probs=244.7
Q ss_pred chHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCccEE
Q 005021 409 EATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPYC 487 (719)
Q Consensus 409 ~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~ 487 (719)
.++|++++++|.+++++||+++++++|++.++.+ +..+..|++ +| |+||||+||+|++|+++|+|||+.| ++||+
T Consensus 3 ~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~-~~~~~~~~~-~~gp~r~~~~gIaE~~~v~~a~G~A~~G--~rp~~ 78 (324)
T 1w85_B 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGV-FRATEGLQA-EFGEDRVFDTPLAESGIGGLAIGLALQG--FRPVP 78 (324)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCT-TSTTTTHHH-HHCTTTEEECCSCHHHHHHHHHHHHHTT--CEEEE
T ss_pred chHHHHHHHHHHHHHhHCcCEEEEcCcccccCCc-chhHHHHHH-HhCCCcEEEcchhHHHHHHHHHHHHhCC--CEEEE
Confidence 5789999999999999999999999999754333 134466766 89 9999999999999999999999999 69999
Q ss_pred E-ehhhhHHhHHHHHHH-Hhh--------hcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHH
Q 005021 488 A-TFFVFTDYMRAAIRI-SAL--------CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAG 557 (719)
Q Consensus 488 ~-~y~~F~~ra~dqir~-~a~--------~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~ 557 (719)
+ +|++|++|++|||++ .|+ +++||+++.. +.+.|.+|+||+. +|+++||++||++|++|+|++|++.
T Consensus 79 ~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~--~g~~~~~g~~hs~-~~~a~~~~iP~l~V~~Psd~~e~~~ 155 (324)
T 1w85_B 79 EIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSP--FGGGVHTPELHSD-SLEGLVAQQPGLKVVIPSTPYDAKG 155 (324)
T ss_dssp BCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE--ECSSSCCCTTSSC-CCHHHHTTSTTCEEECCSSHHHHHH
T ss_pred EecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEe--ccCCCCCCCcccc-cHHHHHccCCCCEEEeeCCHHHHHH
Confidence 7 799999999999986 576 7999999873 3335666776665 8889999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEcCCCC----CCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCc
Q 005021 558 AYKVAVANRKRPSILALSRQKL----PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA 633 (719)
Q Consensus 558 ~l~~a~~~~~~P~~irl~r~~~----~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~ 633 (719)
++++|++ .++|++||+||... +.++.+ ...+++|++.++++ |.|++||++|++++.|++|+++|+++|++
T Consensus 156 ~l~~a~~-~~~Pv~i~~p~~l~r~~~~~~~~~-~~~~~~Gk~~~~~~----g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~ 229 (324)
T 1w85_B 156 LLISAIR-DNDPVIFLEHLKLYRSFRQEVPEG-EYTIPIGKADIKRE----GKDITIIAYGAMVHESLKAAAELEKEGIS 229 (324)
T ss_dssp HHHHHHH-SSSCEEEEEETTTSSSCCEECCSS-CCCCCTTCCEEEEC----CSSEEEEECTTHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHH-cCCCEEEEechHhcCCCCCCCCCc-cccccCCceEEEec----CCCEEEEEecHHHHHHHHHHHHHHhcCCC
Confidence 9999997 68999999887543 223222 23478898887776 68999999999999999999999999999
Q ss_pred EEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc-cCchhhh------------cCCceEEee-CcCCCCCCHHH
Q 005021 634 VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIV------------GSKGKAIGI-DRFGASAPAGK 699 (719)
Q Consensus 634 v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~-~G~~~~~------------~~~~~~ig~-d~f~~~g~~~e 699 (719)
++|||+++++|||++.+. +++.+++ . +|++|++.. .||++.+ ..++.++|+ |.|+++|+
T Consensus 230 v~vi~~~~l~P~d~~~i~--~~~~~~~-~-vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~~--- 302 (324)
T 1w85_B 230 AEVVDLRTVQPLDIETII--GSVEKTG-R-AIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQ--- 302 (324)
T ss_dssp EEEEECSEEESCCHHHHH--HHHHHHS-C-EEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCEEEEECSSSSCCGG---
T ss_pred EEEEEeeeecCCCHHHHH--HHHhhCC-c-EEEEeCCCcCChHHHHHHHHHHhhCccccCCCeEEEecCCcCCCcHH---
Confidence 999999999999998753 4555554 3 588999975 6676522 135678999 89999987
Q ss_pred HHHHhCCCHHHHHHHHHHhC
Q 005021 700 IYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 700 l~~~~gl~~e~I~~~i~~~l 719 (719)
|+++||||+++|+++|+++|
T Consensus 303 l~~~~gl~~~~I~~~i~~~l 322 (324)
T 1w85_B 303 AESVWLPNFKDVIETAKKVM 322 (324)
T ss_dssp GHHHHSCCHHHHHHHHHHHH
T ss_pred HHHHhCcCHHHHHHHHHHHh
Confidence 99999999999999998864
|
| >1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-49 Score=425.01 Aligned_cols=290 Identities=17% Similarity=0.126 Sum_probs=243.9
Q ss_pred chHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCccEE
Q 005021 409 EATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPYC 487 (719)
Q Consensus 409 ~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~ 487 (719)
.++|++++++|.+++++||+++++++|++.++.+ ++.+..|++ +| |+||||+||+|++|+++|+|||++| ++||+
T Consensus 4 ~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~-~~~~~~~~~-~~gp~r~~~~gIaE~~~v~~a~G~A~~G--~~p~~ 79 (324)
T 1umd_B 4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGV-FLVTEGLLQ-KYGPDRVMDTPLSEAAIVGAALGMAAHG--LRPVA 79 (324)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCT-TSTTTTHHH-HHCTTTEEECCSCHHHHHHHHHHHHHHT--CEEEE
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEECCcccccCCc-chhhHHHHH-HhCCCcEEECchhHHHHHHHHHHHHHCC--CEEEE
Confidence 5789999999999999999999999999754433 234466866 89 9999999999999999999999999 69999
Q ss_pred E-ehhhhHHhHHHHHHH-Hhh--------hcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHH
Q 005021 488 A-TFFVFTDYMRAAIRI-SAL--------CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAG 557 (719)
Q Consensus 488 ~-~y~~F~~ra~dqir~-~a~--------~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~ 557 (719)
+ +|++|++|++|||++ .|+ +++||+++.. +.+.+.+|++||. +|+++||++||++|++|+|++|++.
T Consensus 80 ~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~--~g~~~~~g~~hs~-~~~a~~~~iP~~~V~~P~d~~e~~~ 156 (324)
T 1umd_B 80 EIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP--SGGGVRGGHHHSQ-SPEAHFVHTAGLKVVAVSTPYDAKG 156 (324)
T ss_dssp ECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE--ECSSSSCGGGSSC-CCHHHHHTSTTCEEEECCSHHHHHH
T ss_pred EeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc--CCCCCCCCCccch-hHHHHHhcCCCCEEEEeCCHHHHHH
Confidence 7 799999999999987 475 7999999985 2234566776766 8999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEcCCCC----CCCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCc
Q 005021 558 AYKVAVANRKRPSILALSRQKL----PHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKA 633 (719)
Q Consensus 558 ~l~~a~~~~~~P~~irl~r~~~----~~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~ 633 (719)
++++|++ .++|++||+||... +.++++ ...+++|++.++++ |.|++||++|++++.|++|+++|+++|++
T Consensus 157 ~l~~a~~-~~~Pv~i~~p~~l~~~~~~~~~~~-~~~~~~Gk~~~~~~----g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~ 230 (324)
T 1umd_B 157 LLKAAIR-DEDPVVFLEPKRLYRSVKEEVPEE-DYTLPIGKAALRRE----GKDLTLICYGTVMPEVLQAAAELAKAGVS 230 (324)
T ss_dssp HHHHHHH-CSSCEEEEEEGGGSSSCCEECCSS-CCCCCTTCCEEEEC----CSSEEEEECGGGHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHh-cCCCEEEEechHhcCCCCCCcCCC-CccccCCcceEEec----CCCEEEEEecHHHHHHHHHHHHHHhcCCC
Confidence 9999997 68999998876432 233332 23478898877776 68999999999999999999999999999
Q ss_pred EEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc-cCchhhh------------cCCceEEee-CcCCCCCCHHH
Q 005021 634 VRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIV------------GSKGKAIGI-DRFGASAPAGK 699 (719)
Q Consensus 634 v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~-~G~~~~~------------~~~~~~ig~-d~f~~~g~~~e 699 (719)
++|||+++++|||++.+. +++.+++ . +|++|++.. .||++.+ ..++.++|+ |.|+++|
T Consensus 231 v~vi~~~~l~P~d~~~i~--~~~~~~~-~-vv~vEe~~~~gG~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~---- 302 (324)
T 1umd_B 231 AEVLDLRTLMPWDYEAVM--NSVAKTG-R-VVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA---- 302 (324)
T ss_dssp EEEEECCEEETCCHHHHH--HHHHHHS-C-EEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST----
T ss_pred EEEEEeceecCCCHHHHH--HHHhcCC-e-EEEEecCCcCCCHHHHHHHHHHHhCccccCCCeEEEeCCCCCCCHH----
Confidence 999999999999998753 4555554 3 699999975 5676532 235678999 8999998
Q ss_pred HHHHhCCCHHHHHHHHHHhC
Q 005021 700 IYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 700 l~~~~gl~~e~I~~~i~~~l 719 (719)
|++++|+|+++|+++|+++|
T Consensus 303 l~~~~g~~~~~I~~~i~~~l 322 (324)
T 1umd_B 303 QDKLYLPTVTRILNAAKRAL 322 (324)
T ss_dssp THHHHSCCHHHHHHHHHHHH
T ss_pred HHHHhCcCHHHHHHHHHHHh
Confidence 99999999999999998864
|
| >2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-48 Score=469.37 Aligned_cols=484 Identities=14% Similarity=0.104 Sum_probs=310.2
Q ss_pred cccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc-ChhHHHHHHHHhhhcCCC--cEEEEEeCCC
Q 005021 195 EVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ-MEGIANEASSLAGHLGLG--KLIAFYDDNH 271 (719)
Q Consensus 195 ~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~-~eG~~~EAln~A~~~~L~--nli~ivddN~ 271 (719)
...+||+|++++.|+|+|+|.++++..+++++.+..+.++||++|||++ +||.+|||||+|+.|+|+ |+|+||+||+
T Consensus 486 ~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~ 565 (1113)
T 2xt6_A 486 TANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQ 565 (1113)
T ss_dssp CCCCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECS
T ss_pred cCCCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCC
Confidence 3458899999999999999999987544443333357899999999995 999999999999999997 8999999999
Q ss_pred CCcccchhhh-cchhHHHHHhccCceEEEEe-----------------eeecCCCcccc-ccccccCCCCCH-HHH-HH-
Q 005021 272 ISIDGDTEIA-FTENVDKRFEGLGWHVIWVT-----------------TTIGFGSPNKA-NSYSVHGSALGA-KEV-DA- 329 (719)
Q Consensus 272 ~sis~~~~~~-~~~~~~~~~~a~G~~~~~v~-----------------t~~g~g~~~~~-~~~~~h~~~l~~-~~~-~~- 329 (719)
++|++++... ......+++++|||+++.|+ .+.+.+|.+++ .+++.+|+...+ ..+ +.
T Consensus 566 ~gist~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~~~~~~ 645 (1113)
T 2xt6_A 566 IGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPY 645 (1113)
T ss_dssp CBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTCHH
T ss_pred cccccCccccccccCHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCccccCChH
Confidence 9999976532 23345678999999999981 12345565554 234444433211 111 10
Q ss_pred HHHHcCCCCCCCCCcHHHHHHHHH-Hhhcch-------hHHHHHHHHHhh-h--hh---c-CchhhhhhhhhhcC--CCC
Q 005021 330 TRKNLGWPYEPFHVPEDVKKHWSR-HVAEGA-------TLEAEWNAKFAE-Y--EK---K-YPEEAAEFKSISSG--QLP 392 (719)
Q Consensus 330 ~~~~l~~~~~~~~~~~~v~~~~~~-~~~~g~-------~~~~~~~~~~~~-~--~~---~-~p~~~~~~~~~~~g--~~p 392 (719)
..++.....+| +..|++ +..+|- .+.++..+.+.+ + ++ + .|..+..+.....+ ..+
T Consensus 646 ~~~~~~~~~dp-------i~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1113)
T 2xt6_A 646 MYDVIDTKRGS-------RKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQIPSKLA 718 (1113)
T ss_dssp HHHHHTTCCCH-------HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CC
T ss_pred HHHHHHhcCCH-------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccCCC
Confidence 11111111222 223322 122221 111111111110 1 00 1 11111000000000 000
Q ss_pred Cc--------c---cccCC-CCCCCCC-c--chHHHHH------HHH------HHHHHhhCCceEEEecCCCCCcc----
Q 005021 393 AG--------W---EKALP-TYTPESP-A--EATRNLS------QTC------LNALAKTLPGLLGGSADLASSNM---- 441 (719)
Q Consensus 393 ~~--------~---~~~~~-~~~~~~~-~--~s~r~a~------~~~------L~~l~~~dp~iv~~saDl~~s~~---- 441 (719)
.. + ....| .|..... . ...|..+ ..+ +..|++++++|+++++|++.+++
T Consensus 719 t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~r~~m~~~~~i~~a~~e~la~~~ll~~~~~V~l~GeDv~rgtfs~rh 798 (1113)
T 2xt6_A 719 TAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRH 798 (1113)
T ss_dssp CCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCEEEEEETTTTTCTTSCCC
T ss_pred CccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCCEEEEcccCCCccchhcc
Confidence 00 0 00011 1111100 0 1112111 222 33569999999999999987653
Q ss_pred ---------ccccccccC------cccCCCCCccccccccchHHHHHHHHHhcCCCCccEE-EehhhhHHhH---HHHHH
Q 005021 442 ---------TLLKMFGDF------QKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFTDYM---RAAIR 502 (719)
Q Consensus 442 ---------~~~~g~~~f------~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~-~~y~~F~~ra---~dqir 502 (719)
..+..+..| +++.+|+||+|+||+|++++|+|+|||+.|...+|++ .+|++|++++ +||+.
T Consensus 799 ~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i 878 (1113)
T 2xt6_A 799 AVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFI 878 (1113)
T ss_dssp SSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTT
T ss_pred hheecccCCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHhcCCCCceEEEEEEHHHHhhhHHHHHHHH
Confidence 122345556 5546899999999999999999999999994234444 5899999987 99976
Q ss_pred HH----hhhcCCEEEEEecCCCccCCCCCCCCC--hhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc-CCCcEEEEEc
Q 005021 503 IS----ALCEAGVIYVMTHDSIGLGEDGPTHQP--IEHLASFRAMPNILMLRPADGNETAGAYKVAVAN-RKRPSILALS 575 (719)
Q Consensus 503 ~~----a~~~~pV~~v~~~~g~g~g~dG~THq~--~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~-~~~P~~irl~ 575 (719)
.. +++++||++++.|.+ .| +|++||+ +|++..|+++|||+|++|+|+.|++.+|+.++.. .++|++|++|
T Consensus 879 ~~~~~k~~~~~~vv~~lp~G~--~G-~G~~Hs~~~~E~~l~l~~~pnm~V~~Ps~~~~~~~lLr~a~~~~~~~Pvii~~p 955 (1113)
T 2xt6_A 879 SSGEAKWGQLSDVVLLLPHGH--EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTP 955 (1113)
T ss_dssp TTHHHHHCCCCCCEEEEECCC--SS-SCTTSSCCCHHHHHHHCCTTSCEEECCSSHHHHHHHHHHHHHSSCCCCEEEEEC
T ss_pred HHHHHHhCCCCCEEEEeCCCC--CC-CChhhhcccHHHHHhcCCCCCcEEEecCCHHHHHHHHHHHHhccCCCCEEEEec
Confidence 54 356999999996644 56 9999998 5665556999999999999999999999998864 2499999999
Q ss_pred CCCCCC---CCC-----CCccccccccEEE---ecCCCCCCCCE--EEEEeCHhHHHHHHHHHHHHhCC-CcEEEEecCC
Q 005021 576 RQKLPH---LAG-----TSIDGVEKGAYII---SDNSSGNKPDV--ILIGTGSELEIAAKAAEELRKGG-KAVRVVSFVS 641 (719)
Q Consensus 576 r~~~~~---~~~-----~~~~~~~~G~~~i---~~~~~~~g~dv--tIva~G~~v~~al~Aa~~L~~~G-i~v~VId~~~ 641 (719)
|.-+.. .+. +.....++|++.+ +++ |.|| +||++|.+ ..++++++ +++| ++++|||+++
T Consensus 956 k~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~----g~dv~r~iv~~G~~-~~~l~aa~--~~~g~i~v~VIdl~~ 1028 (1113)
T 2xt6_A 956 KSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGD----RNKVTRLLLTSGKI-YYELAARK--AKENREDVAIVRIEQ 1028 (1113)
T ss_dssp SGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCC----STTCCEEEEECSTH-HHHHHHHH--HHHTCTTEEEEEESE
T ss_pred hHHhCCCCCCCcccccCCCCccccCCcceeeccccC----ccccCEEEEEECHH-HHHHHHHH--HhCCCCCEEEEEeee
Confidence 863321 110 0111125677664 444 6899 99999998 77887776 5678 9999999999
Q ss_pred hhhHHHHHHHhhhhhccCCCc-eEEEEccccc-cCchhhh-----------cCCceEEee-CcCCCC-CCH
Q 005021 642 WELFDEQSDAYKESVLPAAVS-ARVSIEAGST-FGWEKIV-----------GSKGKAIGI-DRFGAS-APA 697 (719)
Q Consensus 642 l~pld~~~~~~~~sv~~~~~~-~vvvvE~~~~-~G~~~~~-----------~~~~~~ig~-d~f~~~-g~~ 697 (719)
|+|||.+++. +++.+++.. -+|++||+.. .|+++++ ..++.++|. |.|.+. |..
T Consensus 1029 l~Pld~~~i~--~~~~k~~~~~~vv~veE~~~~gG~gs~v~~~l~e~~~~l~~~~~~vg~~d~~~p~~g~~ 1097 (1113)
T 2xt6_A 1029 LAPLPRRRLA--ETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEILPDHFTGLKRISRRAMSAPSSGSS 1097 (1113)
T ss_dssp EESCCHHHHH--HHHTTCTTCCEEEEEEEEETTSTTHHHHHHHHHHHSHHHHTTCEEEEECCCSSSSCSCH
T ss_pred ecCCCHHHHH--HHHHhCCCCceEEEEecCCCCCCcHHHHHHHHHHHhhhcCCCeEEEccCCcCCCCCCCH
Confidence 9999999875 567666641 1477877766 4554422 246778999 788774 443
|
| >1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-48 Score=422.10 Aligned_cols=287 Identities=16% Similarity=0.119 Sum_probs=242.4
Q ss_pred chHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCccEE
Q 005021 409 EATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIPYC 487 (719)
Q Consensus 409 ~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~ 487 (719)
.++|++++++|.+++++||+++++++|++.++.+ +..+..|++ +| |+||||+||+|++|+++|+|||+.| ++||+
T Consensus 5 ~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~-~~~~~~~~~-~~gp~r~~~~gisE~~~~~~a~G~A~~G--~rp~~ 80 (338)
T 1qs0_B 5 MTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGV-FRCTEGLQT-KYGKSRVFDAPISESGIVGTAVGMGAYG--LRPVV 80 (338)
T ss_dssp CCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCT-TSTTTTHHH-HHCTTTEEECCSCHHHHHHHHHHHHHHT--CEEEE
T ss_pred chHHHHHHHHHHHHHhhCCCEEEECCcccccCCc-chhHHHHHH-HhCCCcEEEccccHHHHHHHHHHHHhCC--CEEEE
Confidence 5789999999999999999999999999754433 234567876 89 9999999999999999999999999 69999
Q ss_pred E-ehhhhHHhHHHHHHH-Hhhhc--------CCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHH
Q 005021 488 A-TFFVFTDYMRAAIRI-SALCE--------AGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAG 557 (719)
Q Consensus 488 ~-~y~~F~~ra~dqir~-~a~~~--------~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~ 557 (719)
+ +|++|++|++|||++ .|+++ +||++++++++ +.||+|||+++|+++||++||++|++|+|++|++.
T Consensus 81 ~~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g---~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~ 157 (338)
T 1qs0_B 81 EIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG---GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKG 157 (338)
T ss_dssp ECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC---SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHH
T ss_pred EeccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC---CCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHH
Confidence 7 799999999999985 57555 99999997765 57999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEc----CCCCC----------------CCCCCCccccccccEEEecCCCCCCCCEEEEEeCHhH
Q 005021 558 AYKVAVANRKRPSILALS----RQKLP----------------HLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSEL 617 (719)
Q Consensus 558 ~l~~a~~~~~~P~~irl~----r~~~~----------------~~~~~~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v 617 (719)
++++|++ .++|++||+| |+..+ .++.+ .+.+++|++.+.++ |.|++||++|+++
T Consensus 158 ~l~~A~~-~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gk~~~~~~----g~dv~iva~G~~~ 231 (338)
T 1qs0_B 158 LLIASIE-CDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDG-YYTVPLDKAAITRP----GNDVSVLTYGTTV 231 (338)
T ss_dssp HHHHHHH-SSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEESS-CCCCCTTCCCEEEC----CSSCEEEECTTHH
T ss_pred HHHHHHh-cCCcEEEEEchHhhcCcccccccCccchhhcccccccCCC-CcccccCceeEecC----CCCEEEEEeCHHH
Confidence 9999997 5999999776 65444 23222 23467888766666 6899999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc-cCchhhh------------cCCce
Q 005021 618 EIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST-FGWEKIV------------GSKGK 684 (719)
Q Consensus 618 ~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~-~G~~~~~------------~~~~~ 684 (719)
+.|++|+++ +|++++|||+++++|||++.+. +++.+++ . +|++|++.. .||++.+ ..++.
T Consensus 232 ~~a~~Aa~~---~Gi~v~vi~~~~l~P~d~~~i~--~~~~~~~-~-vvvvEe~~~~gG~g~~V~~~l~~~~~~~l~~~v~ 304 (338)
T 1qs0_B 232 YVAQVAAEE---SGVDAEVIDLRSLWPLDLDTIV--ESVKKTG-R-CVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIE 304 (338)
T ss_dssp HHHHHHHHH---HCCCCEEEECSEEESCCHHHHH--HHHHHHS-C-EEEEESSCSTTSTHHHHHHHHHHHSSSSCCSCCE
T ss_pred HHHHHHHHH---cCCCEEEEeecccCCCCHHHHH--HHHhcCC-E-EEEEecCCcCCcHHHHHHHHHHHhcccccCCCeE
Confidence 999999997 5999999999999999998753 4555554 3 699999874 5676532 13467
Q ss_pred EEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 685 AIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 685 ~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
++|+ |.|.+++ |++++|+|+++|+++|++++
T Consensus 305 ~ig~~d~~~~~~----l~~~~g~~~~~I~~~i~~~l 336 (338)
T 1qs0_B 305 RVTGWDTPYPHA----QEWAYFPGPSRVGAALKKVM 336 (338)
T ss_dssp EEECCSSCCCST----THHHHSCCHHHHHHHHHHSS
T ss_pred EEecCCcCCcHH----HHHHHCCCHHHHHHHHHHHh
Confidence 8999 7888876 99999999999999999875
|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=237.79 Aligned_cols=186 Identities=17% Similarity=0.156 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCCh
Q 005021 90 KSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQE 169 (719)
Q Consensus 90 ~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~ 169 (719)
+.+..||.+..+++...++||+|+++|++..-.+++...+.++| +||+||+ +|+. |++++++|+. ..
T Consensus 43 ~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~------~rD~i~~--s~r~---~~~~~~~G~~--~~ 109 (367)
T 1umd_A 43 RDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRP------GFDWVFP--YYRD---HGLALALGIP--LK 109 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCT------TTSEEEC--CTTT---HHHHHHHTCC--HH
T ss_pred HHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCC------CCcEEEe--CcHH---HHHHHHcCCC--HH
Confidence 46899999999999988899999999999888888887788987 7899986 6887 9999999975 56
Q ss_pred hHHhhhhh------cCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc
Q 005021 170 DDLKNFRQ------WGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ 243 (719)
Q Consensus 170 ~~l~~~r~------~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~ 243 (719)
+.|.+|++ .|+..++||... ..++...+|++|++++.|+|+|+|.|+.+ .+.+|||++|||++
T Consensus 110 ~~l~~~~g~~~g~~~G~~~~~h~~~~-~~~~~~~~g~lG~~l~~a~G~A~a~k~~~----------~~~~vv~i~GDGa~ 178 (367)
T 1umd_A 110 ELLGQMLATKADPNKGRQMPEHPGSK-ALNFFTVASPIASHVPPAAGAAISMKLLR----------TGQVAVCTFGDGAT 178 (367)
T ss_dssp HHHHHHHTBTTCTTTTCSCSSCCCBT-TTTBCCCCSSTTTTHHHHHHHHHHHHHTT----------CCCCEEEEEETGGG
T ss_pred HHHHHHhCCCCCCCCCCCCCCCCccc-ccCcCCCCchhhhhhhHHHHHHHHHHHhC----------CCCeEEEEEccccc
Confidence 77889988 455555787532 33567799999999999999999999875 36789999999999
Q ss_pred ChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhh-cchhHHHHHhccCceEEEE
Q 005021 244 MEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 244 ~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~-~~~~~~~~~~a~G~~~~~v 300 (719)
++|.+||||++|+.++|+ +|+||+||+|+|++++... ...++.+++++|||+++.|
T Consensus 179 ~~G~~~Eal~~A~~~~lp-vi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~V 235 (367)
T 1umd_A 179 SEGDWYAGINFAAVQGAP-AVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLV 235 (367)
T ss_dssp GSHHHHHHHHHHHHTTCS-EEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEE
T ss_pred ccCcHHHHHHHHHHhCcC-EEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEe
Confidence 999999999999999996 9999999999999987643 3467899999999999988
|
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=6.3e-18 Score=185.85 Aligned_cols=141 Identities=24% Similarity=0.269 Sum_probs=115.1
Q ss_pred CCcEEEeCCCCchHHHHHHHHhCCCCCChhHHhhhhhc------CCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHH
Q 005021 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQW------GSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALA 214 (719)
Q Consensus 141 rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~~~r~~------~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A 214 (719)
.| +|++ .|.. ..+++..|+. ..+.|..|+.. |+..++|+...+ .++...+|++|+|++.|+|+|+|
T Consensus 106 ~D-~v~~-~yR~---~~~~~~~G~~--~~~~l~e~~g~~~g~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~AvG~AlA 177 (400)
T 2bfd_A 106 TD-LVFG-QARE---AGVLMYRDYP--LELFMAQCYGNISDLGKGRQMPVHYGCKE-RHFVTISSPLATQIPQAVGAAYA 177 (400)
T ss_dssp TS-EEEC-CSCC---HHHHHHTTCC--HHHHHHHHHTCTTCTTTTCSCSSCCCBTT-TTBCCCCSSTTTHHHHHHHHHHH
T ss_pred CC-EEEe-cCcC---HHHHHHcCCC--HHHHHHHhcCCCCCCCCCCCCCcCCcccc-cCccccCccccccccHHHHHHHh
Confidence 35 5555 5888 5677788974 44556777754 333456776433 34678889999999999999999
Q ss_pred HHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhh-cchhHHHHHhcc
Q 005021 215 EKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA-FTENVDKRFEGL 293 (719)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~-~~~~~~~~~~a~ 293 (719)
.++++ .+++|||++|||++++|.+||+||+|+.|+| |+|+||+||+++|++++... ...++.+++++|
T Consensus 178 ~~~~~----------~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~l-pvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~ 246 (400)
T 2bfd_A 178 AKRAN----------ANRVVICYFGEGAASEGDAHAGFNFAATLEC-PIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246 (400)
T ss_dssp HHHHT----------CCCCEEEEEETTGGGSHHHHHHHHHHHHTTC-CEEEEEEECSEETTEEGGGTCSSSTTGGGTGGG
T ss_pred hhhhC----------CCCeEEEEECchhhhcChHHHHHHHHHHHCc-CEEEEEECCceeeeecccccCCCCCHHHHHHHc
Confidence 99875 3789999999999999999999999999999 79999999999999988653 347899999999
Q ss_pred CceEEEE
Q 005021 294 GWHVIWV 300 (719)
Q Consensus 294 G~~~~~v 300 (719)
||+++.|
T Consensus 247 G~~~~~V 253 (400)
T 2bfd_A 247 GIMSIRV 253 (400)
T ss_dssp TCEEEEE
T ss_pred CCcEEEE
Confidence 9999998
|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-17 Score=177.60 Aligned_cols=167 Identities=17% Similarity=0.125 Sum_probs=124.7
Q ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCChhH-Hhhhhh
Q 005021 99 AVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDD-LKNFRQ 177 (719)
Q Consensus 99 ~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~-l~~~r~ 177 (719)
+.+...+..-|+..++.|.--+.+++... +++ .| +|++. |.. +.+++..|. +.++ |..+..
T Consensus 63 ~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~---l~~-------~D-~v~~~-~R~---~~~~~~~G~---~~~~~~~el~G 124 (368)
T 1w85_A 63 SISLNRQGRLGFYAPTAGQEASQIASHFA---LEK-------ED-FILPG-YRD---VPQIIWHGL---PLYQAFLFSRG 124 (368)
T ss_dssp HHHHHHTTSCCSCCCCTTCHHHHHHHHHT---CCT-------TC-EEECC-SSC---HHHHHHTTC---CHHHHHHHHHT
T ss_pred HHHHhhCCccccCCCCCCHHHHHHHHHHh---cCC-------cC-EEEec-chh---HHHHHhcCC---CHHHHHHHHCC
Confidence 33444333447777788877666777655 443 34 45554 777 666667774 4433 233321
Q ss_pred c--CCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHh
Q 005021 178 W--GSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLA 255 (719)
Q Consensus 178 ~--~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A 255 (719)
. |+. .|+ ..++...+|++|+|++.|+|+|+|.++.+ .+.+|||++|||++++|.+||+||+|
T Consensus 125 ~~~G~~--~h~----~~~~~~~~g~lG~~lp~AvG~A~A~~~~~----------~~~~vv~i~GDGa~~~G~~~Eal~~A 188 (368)
T 1w85_A 125 HFHGNQ--IPE----GVNVLPPQIIIGAQYIQAAGVALGLKMRG----------KKAVAITYTGDGGTSQGDFYEGINFA 188 (368)
T ss_dssp CGGGGC--CCT----TCCBCCCCCSTTHHHHHHHHHHHHHHHTT----------CSCCEEEEEETGGGGSHHHHHHHHHH
T ss_pred CCCCCC--CCc----ccccCCCccccCccccHHHHHHHHhHhhC----------CCCeEEEEEchhhhhhcHHHHHHHHH
Confidence 1 222 232 34677899999999999999999999875 37899999999999999999999999
Q ss_pred hhcCCCcEEEEEeCCCCCcccchhhh-cchhHHHHHhccCceEEEE
Q 005021 256 GHLGLGKLIAFYDDNHISIDGDTEIA-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 256 ~~~~L~nli~ivddN~~sis~~~~~~-~~~~~~~~~~a~G~~~~~v 300 (719)
+.|+| |+|+||+||+|+|++++... ...++.+++++|||+++.|
T Consensus 189 ~~~~l-pvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~V 233 (368)
T 1w85_A 189 GAFKA-PAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQV 233 (368)
T ss_dssp HHTTC-CEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEE
T ss_pred HHHCc-CEEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEE
Confidence 99999 59999999999999987643 3467899999999999998
|
| >1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-18 Score=187.11 Aligned_cols=288 Identities=13% Similarity=0.049 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEEEe
Q 005021 410 ATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCAT 489 (719)
Q Consensus 410 s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~ 489 (719)
+..+|+..++.+ ...+++..-+-...+.. ...+..+.+ ++..+|+.+. +|+.++++|.|.|+.| .+|++++
T Consensus 24 ~GneAva~~~~~---ag~~~v~~yPgtP~t~i--~~~l~~~~~-~~g~~~i~~e-~E~~a~~~a~Gaa~aG--~r~~~~t 94 (395)
T 1yd7_A 24 QGDEAIARAAIL---AGCRFYAGYPITPASEI--FEAMALYMP-LVDGVVIQME-DEIASIAAAIGASWAG--AKAMTAT 94 (395)
T ss_dssp EHHHHHHHHHHH---HTCCEEEECCBTTTBCH--HHHHHHHGG-GGTCEEEECS-CHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred EHHHHHHHHHHH---cCCCEEEEEECcchHHH--HHHHHHhhh-hcCcEEEEeC-CHHHHHHHHHHHHHhC--CcEEEEe
Confidence 444555555443 45677776665433221 112222222 3557889987 9999999999999999 5999999
Q ss_pred hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCC--CCCCCCChhhhhHHcCCC--CeEEEeeCCHHHHHHHHHHHHH-
Q 005021 490 FFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGE--DGPTHQPIEHLASFRAMP--NILMLRPADGNETAGAYKVAVA- 564 (719)
Q Consensus 490 y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~--dG~THq~~edia~lr~iP--nl~V~~P~d~~e~~~~l~~a~~- 564 (719)
.+.++.+++|||.+.+..++|++++... +.+.+. ...+||+..-.+++...| ++.+++|++++|+..++..|++
T Consensus 95 s~~G~~~~~d~l~~aa~~~~P~Vi~~~~-~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~l 173 (395)
T 1yd7_A 95 SGPGFSLMQENIGYAVMTETPVVIVDVQ-RSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNL 173 (395)
T ss_dssp ETTHHHHHTTTCC----CCCCEEEEEEC---------------------------CCCCEEECCCSHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCCCEEEEEee-CCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHH
Confidence 9999999999998888889999988743 333221 223344322223556666 9999999999999999999983
Q ss_pred --cCCCcEEEEEcC------CC--CCC---CC----------CC--Ccccc--cc--------ccE--------------
Q 005021 565 --NRKRPSILALSR------QK--LPH---LA----------GT--SIDGV--EK--------GAY-------------- 595 (719)
Q Consensus 565 --~~~~P~~irl~r------~~--~~~---~~----------~~--~~~~~--~~--------G~~-------------- 595 (719)
+.+.||+++++. +. ++. +. .+ ..+.+ +. |.+
T Consensus 174 A~~~~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~h~e~g 253 (395)
T 1yd7_A 174 SEKYRTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEEAKLPFGDPHGDGVPPMPIFGKGYRTYVTGLTHDEKG 253 (395)
T ss_dssp HHHHTSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC-------------------------------------------
T ss_pred HHHHCCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcccccCcccCCCCCCCCCccCCCCceeEeccccccccc
Confidence 246999999863 11 110 00 00 00001 00 110
Q ss_pred ----------------------------EEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHH
Q 005021 596 ----------------------------IISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDE 647 (719)
Q Consensus 596 ----------------------------~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~ 647 (719)
.....-...|.|++||++|+++..|++|++.|+++|++++||++++++|||.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~dv~iva~G~~~~~~~eA~~~L~~~Gi~v~vi~~r~~~Pld~ 333 (395)
T 1yd7_A 254 RPRTVDREVHERLIKRIVEKIEKNKKDIFTYETYELEDAEIGVVATGIVARSALRAVKMLREEGIKAGLLKIETIWPFDF 333 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCCCEEEEEECccHHHHHHHHHHHHHcCCceEEEEeCeecCCCH
Confidence 0000000126899999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCCceEEEEccccccCchhhhcCCceE-EeeCcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 648 QSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKA-IGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 648 ~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~~-ig~d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
+.+. +.+ ++. +.++|+|++. .|+++.+...... ..+...+..+ -.-++++.|.+++++++
T Consensus 334 ~~i~--~~~-~~~-~~vvvvEe~~-G~l~~~v~~~~~~~~~~~~~gk~~-------g~~~~~~ei~~~i~~~~ 394 (395)
T 1yd7_A 334 ELIE--RIA-ERV-DKLYVPEMNL-GQLYHLIKEGANGKAEVKLISKIG-------GEVHTPMEIFEFIRREF 394 (395)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHH--HHH-hcC-CEEEEEeCCc-hHHHHHHHHHhcCCCCeEEEeccC-------CCcCCHHHHHHHHHHhh
Confidence 8764 333 332 3469999997 5666655311000 0001111111 11267888888877653
|
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-15 Score=165.58 Aligned_cols=161 Identities=20% Similarity=0.185 Sum_probs=117.9
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCCChhHH-hhhhhc-CCCCC--
Q 005021 108 SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDL-KNFRQW-GSKTP-- 183 (719)
Q Consensus 108 ~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l-~~~r~~-~~~~~-- 183 (719)
.|+..++.|.--+.+++-.. +++ .| .|+. +|.. +.+.+..|. +.+++ ..|... .+.+.
T Consensus 63 ~gf~~~~~GqEa~~vg~~~a---l~~-------~D-~i~~-~yR~---~~~~~~~G~---~~~~i~~e~~g~~~g~~~g~ 124 (365)
T 2ozl_A 63 RGFCHLCDGQEACCVGLEAG---INP-------TD-HLIT-AYRA---HGFTFTRGL---SVREILAELTGRKGGCAKGK 124 (365)
T ss_dssp CSCCCCCTTCHHHHHHHHHT---SCT-------TS-EEEC-CSCC---HHHHHHTTC---CHHHHHHHHTTCTTSTTTTS
T ss_pred cccccCCCChHHHHHHHHHh---hCC-------CC-EEeh-HHHH---HHHHHhcCC---CHHHHHHHHcCCCCCCCCCC
Confidence 36777778876666666655 443 35 4554 5998 888899995 55553 333211 11111
Q ss_pred -CCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCc
Q 005021 184 -GHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGK 262 (719)
Q Consensus 184 -g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~n 262 (719)
|..+. ..+++...+|++|++++.|+|+|+|.++++ .+.++||++|||++++|.+||+||+|+.|+|+
T Consensus 125 gg~~H~-~~~~~~~~~g~~G~~lp~A~G~A~A~~~~~----------~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lp- 192 (365)
T 2ozl_A 125 GGSMHM-YAKNFYGGNGIVGAQVPLGAGIALACKYNG----------KDEVCLTLYGDGAANQGQIFEAYNMAALWKLP- 192 (365)
T ss_dssp SCTTCC-CBTTBCCCCCSTTTHHHHHHHHHHHHHHHT----------CCCCEEEEEETTGGGCHHHHHHHHHHHHTTCC-
T ss_pred CCCCCc-CccccCCCcchhhhhhHHHHHHHHHHHhcC----------CCceEEEEECchhhhccHHHHHHHHHHHHCcC-
Confidence 11111 134566677999999999999999999876 37889999999999999999999999999995
Q ss_pred EEEEEeCCCCCcccchhhh-cchhHHHHHhccCceEEEE
Q 005021 263 LIAFYDDNHISIDGDTEIA-FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 263 li~ivddN~~sis~~~~~~-~~~~~~~~~~a~G~~~~~v 300 (719)
+|+||+||+|+|+++.... ...++.+ +++||+.+.|
T Consensus 193 vi~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~~~V 229 (365)
T 2ozl_A 193 CIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRV 229 (365)
T ss_dssp EEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEE
T ss_pred EEEEEECCCcccCCCcccccCCCCHHH--HhCCCCEEEE
Confidence 9999999999999876543 2344554 6899999988
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-15 Score=161.69 Aligned_cols=97 Identities=24% Similarity=0.209 Sum_probs=88.4
Q ss_pred CccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCC
Q 005021 193 GIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272 (719)
Q Consensus 193 gi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~ 272 (719)
++...+|++|++++.|+|+|+|.++++ .+.++||++|||++++|.+||+||+|+.|+|+ +|+||+||+|
T Consensus 175 ~~~~~~g~lG~~lp~AvGaA~A~k~~~----------~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lp-vi~Vv~NN~~ 243 (407)
T 1qs0_A 175 GFFTISGNLATQFVQAVGWAMASAIKG----------DTKIASAWIGDGATAESDFHTALTFAHVYRAP-VILNVVNNQW 243 (407)
T ss_dssp TBCCCCSSSSHHHHHHHHHHHHHHHTT----------CCCCEEEEEETGGGGSHHHHHHHHHHHHHTCC-EEEEEEECSE
T ss_pred CccccccccccchhHHHHHHHHHHHhC----------CCCEEEEEECCchhhcChHHHHHHHHHHHCcC-EEEEEECCCc
Confidence 566789999999999999999999875 37899999999999999999999999999997 9999999999
Q ss_pred Ccccchhhh--cchhHHHHHhccCceEEEE
Q 005021 273 SIDGDTEIA--FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 273 sis~~~~~~--~~~~~~~~~~a~G~~~~~v 300 (719)
+|++++... ...++.+++++|||+++.|
T Consensus 244 gi~~~~~~~~~~~~d~a~~a~a~G~~~~~V 273 (407)
T 1qs0_A 244 AISTFQAIAGGESTTFAGRGVGCGIASLRV 273 (407)
T ss_dssp ETTEEGGGGTTTTCCSTHHHHHTTCEEEEE
T ss_pred ceeeccccccCCCCCHHHHHHHcCCeEEEE
Confidence 999987643 3568999999999999998
|
| >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-10 Score=143.70 Aligned_cols=208 Identities=12% Similarity=0.069 Sum_probs=149.3
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 536 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia 536 (719)
.+.+....+|..+++++.|.|..| .++++++-+.=+..+.+.|+..+...+|++++.. ++.+.+..-.+|-...|.
T Consensus 54 ~~~v~~~esE~aA~~aaiGAa~aG--aR~~t~Ts~~Gl~lm~e~l~~~ag~~~P~Vi~va-~R~g~~~glsi~~~hsd~- 129 (1231)
T 2c42_A 54 TLTIREMQSEAGAAGAVHGALAAG--ALTTTFTASQGLLLMIPNMYKISGELLPGVFHVT-ARAIAAHALSIFGDHQDI- 129 (1231)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTT--CCEEEEECHHHHHHHHHHHHHHHHTTCCCEEEEE-ECCCCSSSBCCSCCSHHH-
T ss_pred ceEEEecCChHHHHHHHHHHHHcC--ChHhhhccHHHHHHHHHHHHHHhCCCCCEEEEEC-CCCccCCCCcCCCchhhH-
Confidence 588999999999999999999999 5999998777777888998877778999888874 333322111233333453
Q ss_pred HHcCCCCeEEEeeCCHHHHHHHHHHH----HHcCCCcEEEEEcCCCC-----C-CCCC---------------------C
Q 005021 537 SFRAMPNILMLRPADGNETAGAYKVA----VANRKRPSILALSRQKL-----P-HLAG---------------------T 585 (719)
Q Consensus 537 ~lr~iPnl~V~~P~d~~e~~~~l~~a----~~~~~~P~~irl~r~~~-----~-~~~~---------------------~ 585 (719)
+....+|+.|++|++++|+..++..| .+ ...||++++..-.+ + .+++ .
T Consensus 130 ~~ar~~G~~vl~pss~QEa~dl~~~Af~lAek-~~~PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~~~~~~~~~~~~~~ 208 (1231)
T 2c42_A 130 YAARQTGFAMLASSSVQEAHDMALVAHLAAIE-SNVPFMHFFDGFRTSHEIQKIEVLDYADMASLVNQKALAEFRAKSMN 208 (1231)
T ss_dssp HTTTTSSCEEEECCSHHHHHHHHHHHHHHHHH-HCCCEEEEEETTTTTTCEEEEECCCHHHHHHTSCHHHHHHHHHHSCC
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHHHHHH-cCCCEEEEecCcccccceeeeecCCHHHHHhhcChhhhhhccccccC
Confidence 45677999999999999999999887 43 57899999754110 0 0000 0
Q ss_pred Ccccccccc------------------------------------------EEEecCCCCCCCCEEEEEeCHhHHHHHHH
Q 005021 586 SIDGVEKGA------------------------------------------YIISDNSSGNKPDVILIGTGSELEIAAKA 623 (719)
Q Consensus 586 ~~~~~~~G~------------------------------------------~~i~~~~~~~g~dvtIva~G~~v~~al~A 623 (719)
+..++..|. +..... .+.|++||++|+++..+++|
T Consensus 209 p~~p~~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~---~dAd~vIVa~Gs~~~~~~eA 285 (1231)
T 2c42_A 209 PEHPHVRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVGA---PDAERVIVSMGSSCETIEEV 285 (1231)
T ss_dssp TTSCCEESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEEC---TTCSEEEEECSTHHHHHHHH
T ss_pred CCCceecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeecC---CCCCEEEEEeCHHHHHHHHH
Confidence 001112221 222222 26899999999999999999
Q ss_pred HHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCc
Q 005021 624 AEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGW 675 (719)
Q Consensus 624 a~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~ 675 (719)
++.|+++|++|.||+++++.||+.+.+. ..++.+.+.++|+|+....|.
T Consensus 286 v~~L~~~G~kvgvl~lr~~rPfp~~~i~---~~l~~~~k~i~VvE~~~~~g~ 334 (1231)
T 2c42_A 286 INHLAAKGEKIGLIKVRLYRPFVSEAFF---AALPASAKVITVLDRTKEPGA 334 (1231)
T ss_dssp HHHHHTTTCCEEEEEESEEESCCHHHHH---HTSCTTCCEEEEEESSCCTTC
T ss_pred HHHHHhcCCceEEEEEEEeCCCCHHHHH---HHHHhcCCEEEEEECCCCCCC
Confidence 9999999999999999999999988663 334333334688999855553
|
| >3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.94 E-value=9.6e-10 Score=100.22 Aligned_cols=99 Identities=18% Similarity=0.290 Sum_probs=72.7
Q ss_pred CCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccCchhhhcCCce
Q 005021 605 KPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGK 684 (719)
Q Consensus 605 g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G~~~~~~~~~~ 684 (719)
|.|++||+||+++..|++|++.|+++|+++.||++++++|||.+.+. ..++.... ++|+|++...|+++.+..
T Consensus 13 g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~---~~~~~~~~-vvvvE~~~~G~l~~~i~~--- 85 (118)
T 3ju3_A 13 EADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVK---NVLSSANL-VIDVESNYTAQAAQMIKL--- 85 (118)
T ss_dssp SCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHH---HHHTTCSC-CCCCCCCCCCCHHHHHHH---
T ss_pred CCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHH---HHHcCCCE-EEEEECCCCCcHHHHHHH---
Confidence 68999999999999999999999999999999999999999998764 23333333 699999876777766531
Q ss_pred EEee---CcCCC-CCCHHHHHHHhCCCHHHHHHHHHHh
Q 005021 685 AIGI---DRFGA-SAPAGKIYKEFGITAEAVITAAKEV 718 (719)
Q Consensus 685 ~ig~---d~f~~-~g~~~el~~~~gl~~e~I~~~i~~~ 718 (719)
..+. ..... .|. -++++.|.++++++
T Consensus 86 ~~~~~~~~~i~~~~G~--------~~~~~ei~~~i~~~ 115 (118)
T 3ju3_A 86 YTGIDIKNKILKYNGR--------HMTEDEILKSAKEI 115 (118)
T ss_dssp HHCCCCCCCCCCBTTB--------CCCHHHHHHHHHHH
T ss_pred HcCCCceeEEeeeCCe--------eCCHHHHHHHHHHH
Confidence 1111 11111 122 27788888887765
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=2e-08 Score=116.40 Aligned_cols=88 Identities=13% Similarity=0.147 Sum_probs=70.4
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcc-
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISID- 275 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis- 275 (719)
..|++|.|++.|+|++++.+ +++|||++|||+++.+ +++|+.|..++|+.++||+|||+|++-
T Consensus 418 ~~g~~G~~l~~A~Gaala~~--------------~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~ 481 (603)
T 4feg_A 418 LFATMGVGIPGAIAAKLNYP--------------ERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIK 481 (603)
T ss_dssp SSCCTTCHHHHHHHHHHHCT--------------TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHH
T ss_pred ccccccchhHHHhhHHHhCC--------------CCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHH
Confidence 45789999999999998742 5679999999999876 888999999999877788888889862
Q ss_pred --------c-chhh-hcchhHHHHHhccCceEEEE
Q 005021 276 --------G-DTEI-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 276 --------~-~~~~-~~~~~~~~~~~a~G~~~~~v 300 (719)
. ..+. ....++.+++++|||+.+.|
T Consensus 482 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 516 (603)
T 4feg_A 482 DEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRV 516 (603)
T ss_dssp HHHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEE
T ss_pred HHHHHhcCCCcccCcCCCCCHHHHHHHCCCeEEEE
Confidence 1 1111 12357999999999998877
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.4e-08 Score=113.41 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=75.0
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|++|.|++.|+|+|+|.| + .+++|||++|||+++.+ +++|+.|.+++|+.+++|+|||++++.+
T Consensus 417 g~g~~G~~l~~AiGaa~a~~--~----------~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~ 482 (563)
T 2uz1_A 417 YLGSMGVGFGTALGAQVADL--E----------AGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATL 482 (563)
T ss_dssp TTCCTTTHHHHHHHHHHHHH--H----------HTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHH
T ss_pred CCccccChHHHHHHHHHHhh--C----------CCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHH
Confidence 46899999999999999986 2 26789999999999886 6899999999998889999999999876
Q ss_pred chh-------h-----hcchhHHHHHhccCceEEEE
Q 005021 277 DTE-------I-----AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~-------~-----~~~~~~~~~~~a~G~~~~~v 300 (719)
... . ....++.+.+++|||+++.|
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 518 (563)
T 2uz1_A 483 HFQQLAVGPNRVTGTRLENGSYHGVAAAFGADGYHV 518 (563)
T ss_dssp HHHHHHTCTTCCCSCBCCCCCHHHHHHHTTCEEEEE
T ss_pred HHHHHhcCCCcccCCcCCCCCHHHHHHHcCCeEEEe
Confidence 531 1 02357899999999998875
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.5e-08 Score=113.34 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=75.5
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcc
Q 005021 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISID 275 (719)
Q Consensus 196 ~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis 275 (719)
...|.+|.|++.|+|+|+|.+.++ .+.+|||++|||+++. .+++|+.|..++|+.+++|+|||++++.
T Consensus 410 ~~~g~mG~~l~~A~Gaala~~~~~----------~~~~vv~~~GDG~~~~--~~~el~ta~~~~l~~~ivv~nN~~~~~~ 477 (563)
T 2vk8_A 410 VLWGSIGFTTGATLGAAFAAEEID----------PKKRVILFIGDGSLQL--TVQEISTMIRWGLKPYLFVLNNDGYTIQ 477 (563)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHHC----------TTCCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSCHHH
T ss_pred cchhhhhhHHHHHHHHHHhCcccC----------CCCCEEEEEcchHhhc--cHHHHHHHHHcCCCcEEEEEECCcchhh
Confidence 357899999999999999988654 2578999999999976 4888999999999988899999999985
Q ss_pred cchh----h---hcchhHHHHHhccCce---EEEE
Q 005021 276 GDTE----I---AFTENVDKRFEGLGWH---VIWV 300 (719)
Q Consensus 276 ~~~~----~---~~~~~~~~~~~a~G~~---~~~v 300 (719)
.... . ....++.+++++|||+ .++|
T Consensus 478 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~v 512 (563)
T 2vk8_A 478 KLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRV 512 (563)
T ss_dssp HHHSCTTCGGGCCCCCCGGGHHHHTTCSSEEEEEE
T ss_pred hhhhCCCCCcccCCCCCHHHHHHHhCCCCCcEEEe
Confidence 4321 1 1234788899999998 6665
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.1e-08 Score=115.39 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=73.2
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|++|.|++.|+|+|+|.+ +++|||++|||+++.+ +++|+.|.+++|+.+++|+|||++++.+
T Consensus 434 g~g~mG~~l~~AiGaa~a~~--------------~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~ 497 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMARP--------------DQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIE 497 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHST--------------TSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHH
T ss_pred CCcccccHHHHHHHHHHhCC--------------CCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhH
Confidence 46899999999999999842 5679999999999875 7899999999998889999999999877
Q ss_pred chh-----------h-hcchhHHHHHhccCceEEEE
Q 005021 277 DTE-----------I-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~-----------~-~~~~~~~~~~~a~G~~~~~v 300 (719)
... . ....++.+.+++|||+++.|
T Consensus 498 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 533 (573)
T 2iht_A 498 LYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRA 533 (573)
T ss_dssp HHHHHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEEC
T ss_pred HHHHHhcCCCcCccccCCCCCHHHHHHHcCCeEEEe
Confidence 531 1 11247899999999988765
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=5e-08 Score=112.67 Aligned_cols=88 Identities=13% Similarity=0.092 Sum_probs=73.9
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.|++.|+|+|+|.+ +++|||++|||+++.+ +++|+.|.+++|+.+++|+|||++++..
T Consensus 411 ~~g~mG~~l~~AiGaala~~--------------~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~ 474 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTYP--------------DRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIK 474 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHCT--------------TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGG
T ss_pred CCCcccChHHHHHHHHHhCC--------------CCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHH
Confidence 57899999999999999842 5679999999999876 6999999999999899999999999876
Q ss_pred chhh----------hcchhHHHHHhccCceEEEE
Q 005021 277 DTEI----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~~----------~~~~~~~~~~~a~G~~~~~v 300 (719)
.... ....++.+.+++|||+.++|
T Consensus 475 ~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 508 (590)
T 1v5e_A 475 NKYEDTNKNLFGVDFTDVDYAKIAEAQGAKGFTV 508 (590)
T ss_dssp GTTSSSCCSCCCCCCCCCCHHHHHHHTTSEEEEE
T ss_pred HHHHHhcCCCccccCCCCCHHHHHHHcCCEEEEE
Confidence 4311 12357899999999998876
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.9e-08 Score=113.02 Aligned_cols=88 Identities=18% Similarity=0.135 Sum_probs=72.9
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|++|.|++.|+|+|+|.+ +++|||++|||+++.+ +++|+.|..++|+.+++|+|||++++.+
T Consensus 418 g~g~mG~~l~~AiGaala~~--------------~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~ 481 (566)
T 1ozh_A 418 GQQTMGVALPWAIGAWLVNP--------------ERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVA 481 (566)
T ss_dssp TTCCTTCHHHHHHHHHHHST--------------TSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHH
T ss_pred CcccccchHHHHHHHHHhCC--------------CCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCchhHHH
Confidence 46899999999999999842 5789999999999874 6889999999998888889999999876
Q ss_pred chh----------hhcchhHHHHHhccCceEEEE
Q 005021 277 DTE----------IAFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~----------~~~~~~~~~~~~a~G~~~~~v 300 (719)
... .....++.+.+++|||+.++|
T Consensus 482 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 515 (566)
T 1ozh_A 482 IQEEKKYQRLSGVEFGPMDFKAYAESFGAKGFAV 515 (566)
T ss_dssp HHHHHHHSSCCSCBCCCCCHHHHHHTTTSEEEEC
T ss_pred HHHHHhcCCCccCcCCCCCHHHHHHHcCCeEEEe
Confidence 432 111357899999999998765
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=98.51 E-value=4e-08 Score=111.98 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=72.1
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccch
Q 005021 199 GPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT 278 (719)
Q Consensus 199 G~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~ 278 (719)
|++|.+++.|+|+|+|.+ +++|||++|||+++.+ +++|+.|.+++|+.+++|+|||++++....
T Consensus 401 g~~G~~l~~A~G~a~a~~--------------~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~ 464 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAEP--------------ERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWF 464 (528)
T ss_dssp CCTTSHHHHHHHHHHHCT--------------TSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHH
T ss_pred ccccchHHHHHHHHHhCC--------------CCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHH
Confidence 999999999999999842 4679999999999977 899999999999888888899999986553
Q ss_pred hh-----------hcchhHHHHHhccCceEEEE
Q 005021 279 EI-----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 279 ~~-----------~~~~~~~~~~~a~G~~~~~v 300 (719)
.. ....++.+.+++|||+.+.|
T Consensus 465 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 497 (528)
T 1q6z_A 465 AGVLEAENVPGLDVPGIDFRALAKGYGVQALKA 497 (528)
T ss_dssp HHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEE
T ss_pred HHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEe
Confidence 11 12347899999999998875
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=7.7e-08 Score=111.69 Aligned_cols=88 Identities=22% Similarity=0.252 Sum_probs=71.9
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|++|.+++.|+|+|+|.+ +.+|||++|||+++.+ +++|+.|..++|+.+++|+|||+|++..
T Consensus 440 ~~G~~G~~l~~AiGaala~~--------------~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~ 503 (616)
T 2pan_A 440 QAGPLGWTIPAALGVCAADP--------------KRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIR 503 (616)
T ss_dssp TTCCTTCHHHHHHHHHHHCT--------------TCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHH
T ss_pred CcccccchHHHHHHHHHhCC--------------CCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHH
Confidence 46899999999999999842 5789999999999865 7899999999998889999999998753
Q ss_pred ch---------------hh--hc----chhHHHHHhccCceEEEE
Q 005021 277 DT---------------EI--AF----TENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~---------------~~--~~----~~~~~~~~~a~G~~~~~v 300 (719)
.. +. .. ..++.+.+++|||+++.|
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 548 (616)
T 2pan_A 504 QSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV 548 (616)
T ss_dssp HHGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEE
T ss_pred HHHHHhcCCccccccccccccccCCCCCCCHHHHHHHcCCeEEEE
Confidence 21 10 11 147889999999998876
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=5.7e-08 Score=111.61 Aligned_cols=87 Identities=13% Similarity=0.202 Sum_probs=72.8
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|.+|.|++.|+|+|+|.+ +.+|||++|||+++ +.+++|..|.+++|+.+++|+|||+|++...
T Consensus 421 ~g~mG~~l~~A~G~ala~~--------------~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~ 484 (565)
T 2nxw_A 421 YAGMGFGVPAGIGAQCVSG--------------GKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRT 484 (565)
T ss_dssp TCCTTCHHHHHHHHHHHTT--------------TCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHHH
T ss_pred cccccccchHHHHHHHhCC--------------CCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEee
Confidence 5899999999999999852 56799999999998 8899999999999988999999999988543
Q ss_pred hh------hhcchhHHHHHhccCceEEEE
Q 005021 278 TE------IAFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~------~~~~~~~~~~~~a~G~~~~~v 300 (719)
.. .....++.+.+++|||+.++|
T Consensus 485 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 513 (565)
T 2nxw_A 485 FQPESAFNDLDDWRFADMAAGMGGDGVRV 513 (565)
T ss_dssp HCTTCGGGBCCCCCHHHHTGGGTSEEEEE
T ss_pred ecccCCCCcCCCCCHHHHHHHcCCCEEEe
Confidence 21 112357899999999998876
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=4.6e-08 Score=113.01 Aligned_cols=88 Identities=18% Similarity=0.134 Sum_probs=73.2
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|++|.|++.|+|+|+|.+ +++|||++|||+++.+ +++|+.|.+++|+.+++|+|||++++.+
T Consensus 422 g~g~mG~~l~~AiGaala~~--------------~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~ 485 (589)
T 2pgn_A 422 AEGILGCGFPMALGAQLAEP--------------NSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANW 485 (589)
T ss_dssp TTCCTTCHHHHHHHHHHHCT--------------TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHH
T ss_pred CcchhhhHHHHHHHHHHhCC--------------CCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccch
Confidence 35899999999999999842 5679999999999876 6999999999998889999999999876
Q ss_pred chhh----------hcchhHHHHHhccCceEEEE
Q 005021 277 DTEI----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~~----------~~~~~~~~~~~a~G~~~~~v 300 (719)
.... ....++.+.+++|||+.+.|
T Consensus 486 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 519 (589)
T 2pgn_A 486 TLMNHQFGQNNWTEFMNPDWVGIAKAFGAYGESV 519 (589)
T ss_dssp HHHHHHHSSCCSCBCCCCCHHHHHHHHTCEEEEC
T ss_pred HHHHhhcCCCccccCCCCCHHHHHHHCCCeEEEE
Confidence 5421 11357899999999988765
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=6.7e-08 Score=111.62 Aligned_cols=88 Identities=19% Similarity=0.177 Sum_probs=71.8
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|++|.|++.|+|+|+|.+ +++|||++|||+++.+ +++|+.|.+++|+.+++|+|||+|++.+
T Consensus 424 ~~G~~G~~l~~AiGaala~~--------------~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~ 487 (590)
T 1ybh_A 424 GLGAMGFGLPAAIGASVANP--------------DAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVM 487 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHCT--------------TSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHH
T ss_pred CcccccchHHHHHHHHHhCC--------------CCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHH
Confidence 45899999999999999852 5679999999999865 7899999999998788889999998865
Q ss_pred chh----------h-h-c-------chhHHHHHhccCceEEEE
Q 005021 277 DTE----------I-A-F-------TENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~----------~-~-~-------~~~~~~~~~a~G~~~~~v 300 (719)
... . . . ..++.+.+++||++++.|
T Consensus 488 ~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v 530 (590)
T 1ybh_A 488 QWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARV 530 (590)
T ss_dssp HHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEE
T ss_pred HHHHHhcCCccccccccccccccCCCCCHHHHHHHcCCeEEEe
Confidence 321 0 0 1 247889999999998875
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=7.3e-08 Score=110.84 Aligned_cols=89 Identities=18% Similarity=0.198 Sum_probs=72.4
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcc
Q 005021 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISID 275 (719)
Q Consensus 196 ~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis 275 (719)
...|.+|.|++.|+|+|+|.+ +.+|||++|||+++.+ +++|+.|.+++|+.+++|+|||++++.
T Consensus 422 ~~~g~mG~~l~~A~Gaala~~--------------~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~ 485 (570)
T 2vbf_A 422 PLWGSIGYTFPAALGSQIADK--------------ESRHLLFIGDGSLQLT--VQELGLSIREKLNPICFIINNDGYTVE 485 (570)
T ss_dssp TTTCCTTTHHHHHHHHHHHCT--------------TSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHH
T ss_pred ccchhhhhhHHHHHHHHHhCC--------------CCcEEEEEcchhhhcC--HHHHHHHHHcCCCCEEEEEECCchHHH
Confidence 357899999999999999842 5789999999999774 788999999999989999999999886
Q ss_pred cchh----h---hcchhHHHHHhccCce-----EEEE
Q 005021 276 GDTE----I---AFTENVDKRFEGLGWH-----VIWV 300 (719)
Q Consensus 276 ~~~~----~---~~~~~~~~~~~a~G~~-----~~~v 300 (719)
.... . ....++.+.+++|||+ +++|
T Consensus 486 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v 522 (570)
T 2vbf_A 486 REIHGPTQSYNDIPMWNYSKLPETFGATEDRVVSKIV 522 (570)
T ss_dssp HHHSCTTCGGGCCCCCCGGGHHHHTTCCTTTEEEEEE
T ss_pred HHHhccCCCccCCCCCCHHHHHHHcCCCcCCcceEEe
Confidence 5321 1 1235788899999997 5655
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.1e-08 Score=112.02 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=72.2
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.+++.|+|+|+|.+ +.+|||++|||+++.+ +++|+.|..++++.+++|+|||+|++..
T Consensus 407 ~~g~mG~~l~~A~G~ala~~--------------~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~ 470 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGSQ--------------DRQHVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLINNRGYVIEI 470 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTCT--------------TSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHH
T ss_pred cccchhhHHHHHHHHHHhCC--------------CCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCcceEEE
Confidence 46889999999999999742 5789999999999864 7789999999999899999999999876
Q ss_pred chh-----hhcchhHHHHHhccCc-----eEEEE
Q 005021 277 DTE-----IAFTENVDKRFEGLGW-----HVIWV 300 (719)
Q Consensus 277 ~~~-----~~~~~~~~~~~~a~G~-----~~~~v 300 (719)
... .....++.+.+++||| +++.|
T Consensus 471 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v 504 (566)
T 2vbi_A 471 AIHDGPYNYIKNWDYAGLMEVFNAGEGHGLGLKA 504 (566)
T ss_dssp TTSCCGGGCCCCCCTTTHHHHHHTTTCCCEEEEE
T ss_pred eeccCCccCCCCCCHHHHHHHcCCCCCCccEEEe
Confidence 532 1123477888999999 77765
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 | Back alignment and structure |
|---|
Probab=98.43 E-value=7.1e-08 Score=110.48 Aligned_cols=88 Identities=16% Similarity=0.108 Sum_probs=71.2
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|++|.|++.|+|+|+|.+ +++|||++|||+++. .+++|..|..++|+.+++|+|||++++..
T Consensus 406 ~~g~mG~~l~~A~G~a~a~~--------------~~~vv~~~GDG~~~~--~~~el~ta~~~~l~~~ivv~nN~~~~~~~ 469 (552)
T 1ovm_A 406 LWGSIGYTLAAAFGAQTACP--------------NRRVIVLTGDGAAQL--TIQELGSMLRDKQHPIILVLNNEGYTVER 469 (552)
T ss_dssp TTCCTTHHHHHHHHHHHHCT--------------TSCEEEEEEHHHHHH--HTTHHHHHHHTTCCCEEEEEESSSCHHHH
T ss_pred hhHhhhhHHHHHHHHHHhCC--------------CCcEEEEECchHHHh--HHHHHHHHHHhCCCCEEEEEECCCCeEEE
Confidence 57999999999999999842 567999999999974 58889999999998899999999999864
Q ss_pred ch----hh---hcchhHHHHHhccCc----eEEEE
Q 005021 277 DT----EI---AFTENVDKRFEGLGW----HVIWV 300 (719)
Q Consensus 277 ~~----~~---~~~~~~~~~~~a~G~----~~~~v 300 (719)
.. .. ....++.+.+++||| +.++|
T Consensus 470 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~v 504 (552)
T 1ovm_A 470 AIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRV 504 (552)
T ss_dssp HHSCTTCGGGCCCCCCGGGSTTTSCSSCCEEEEEE
T ss_pred eeccCCCCcccCCCCCHHHHHHHhCCCcCCCEEEe
Confidence 32 11 123467888999999 66665
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.6e-07 Score=110.12 Aligned_cols=88 Identities=19% Similarity=0.198 Sum_probs=72.0
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.|++.|+|+|+|. .+.+|||++|||+++. .+++|+.|..++|+.++||+|||++++..
T Consensus 511 ~~G~mG~~lpaAiGaalA~--------------p~~~Vv~i~GDGsf~~--~~~eL~ta~~~~l~v~ivV~NN~~~g~~~ 574 (677)
T 1t9b_A 511 GLGTMGYGLPAAIGAQVAK--------------PESLVIDIDGDASFNM--TLTELSSAVQAGTPVKILILNNEEQGMVT 574 (677)
T ss_dssp SSCCTTCHHHHHHHHHHHC--------------TTSEEEEEEEHHHHHH--HGGGHHHHHHHTCCCEEEEEECSSCHHHH
T ss_pred CcchhhchHHHHHHHHHhC--------------CCCeEEEEEeehHHhc--cHHHHHHHHHhCCCeEEEEEeCCCchhhh
Confidence 4588999999999999984 1678999999999976 46789999999998889999999998754
Q ss_pred chhh-----------hcchhHHHHHhccCceEEEE
Q 005021 277 DTEI-----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~~-----------~~~~~~~~~~~a~G~~~~~v 300 (719)
.... ....++.+.+++|||+.+.|
T Consensus 575 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v 609 (677)
T 1t9b_A 575 QWQSLFYEHRYSHTHQLNPDFIKLAEAMGLKGLRV 609 (677)
T ss_dssp HHHHHHSTTCCCSCCCCCCCHHHHHHHTTCEEEEE
T ss_pred hhhhhhcCCCcccCcCCCCCHHHHHHHcCCeEEEE
Confidence 3210 12347899999999998876
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.5e-07 Score=108.25 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=68.8
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.+++.|+|+|+|.+ +.+|||++|||+++. .+++|+.|..++++.+++|+|||++++..
T Consensus 411 ~~g~~G~~l~~A~G~ala~~--------------~~~vv~i~GDGs~~~--~~~el~ta~~~~l~~~ivv~NN~~~~~~~ 474 (568)
T 2wvg_A 411 QWGHIGWSVPAAFGYAVGAP--------------ERRNILMVGDGSFQL--TAQEVAQMVRLKLPVIIFLINNYGYTIEV 474 (568)
T ss_dssp TTCCTTTHHHHHHHHHHHCT--------------TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHHH
T ss_pred CcchhhhHHHHHHHHHHhCC--------------CCcEEEEEcChhHhc--cHHHHHHHHHcCCCcEEEEEECCcceEee
Confidence 46789999999999999842 578999999999976 57889999999998889999999999875
Q ss_pred chh-----hhcchhHHHHHhccCc
Q 005021 277 DTE-----IAFTENVDKRFEGLGW 295 (719)
Q Consensus 277 ~~~-----~~~~~~~~~~~~a~G~ 295 (719)
... .....++.+.+++||+
T Consensus 475 ~~~~~~~~~~~~~d~~~~a~a~G~ 498 (568)
T 2wvg_A 475 MIHDGPYNNIKNWDYAGLMEVFNG 498 (568)
T ss_dssp TTSCCGGGCCCCCCHHHHHHHHHC
T ss_pred eeccCCCcCCCCCCHHHHHHHhCC
Confidence 432 1123478899999999
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.6e-07 Score=103.68 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=69.4
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|++|.+++.|+|+|+|.. +.+|||++|||+++.+ +++|+.|.+++++.+++|+|||+|++-.
T Consensus 404 ~~g~mG~~l~~AiGaala~~--------------~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~ 467 (549)
T 3eya_A 404 NHGSMANAMPQALGAQATEP--------------ERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVA 467 (549)
T ss_dssp TTCCTTCHHHHHHHHHHHST--------------TSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC-
T ss_pred CCchhhhHHHHHHHHHHhCC--------------CCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHH
Confidence 35889999999999999842 5679999999999654 7899999999998889999999887632
Q ss_pred chh----------hhcchhHHHHHhccCceEEEE
Q 005021 277 DTE----------IAFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~----------~~~~~~~~~~~~a~G~~~~~v 300 (719)
... .....++.+.+++||++.++|
T Consensus 468 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 501 (549)
T 3eya_A 468 MEMKAGGYLTDGTELHDTNFARIAEACGITGIRV 501 (549)
T ss_dssp -----------CCBCCCCCHHHHHHHTTSEEEEE
T ss_pred HHHHhcCCCCcCCcCCCCCHHHHHHHcCCcEEEe
Confidence 110 012347889999999988765
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.18 E-value=9.9e-07 Score=102.13 Aligned_cols=86 Identities=10% Similarity=0.010 Sum_probs=68.0
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|.+|.+++.|+|+|+|. +.+|||++|||+++.+ +++|+.|..++|+.+++|+|||+++|...
T Consensus 454 ~~~ig~~l~~AiGaala~---------------~~~vv~i~GDGsf~~~--~~eL~ta~~~~lp~~ivv~NN~~~~i~~~ 516 (604)
T 2x7j_A 454 ANGIDGVVSSAMGVCEGT---------------KAPVTLVIGDLSFYHD--LNGLLAAKKLGIPLTVILVNNDGGGIFSF 516 (604)
T ss_dssp TCCSSSHHHHHHHHHHHH---------------TSCEEEEEEHHHHHHT--GGGGHHHHHHCCCEEEEEEECSSCGGGGG
T ss_pred cCCcCcHHHHHHHHHhcC---------------CCcEEEEEccHHHHhH--HHHHHHhhhcCCCeEEEEEeCCCCccccc
Confidence 356789999999999983 3569999999999876 56799999999988888889999998543
Q ss_pred hh---------hh----cchhHHHHHhccCceEEEE
Q 005021 278 TE---------IA----FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~---------~~----~~~~~~~~~~a~G~~~~~v 300 (719)
.. .. ...++.+.+++||++.++|
T Consensus 517 ~~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 552 (604)
T 2x7j_A 517 LPQASEKTHFEDLFGTPTGLDFKHAAALYGGTYSCP 552 (604)
T ss_dssp SGGGSCHHHHHHHTTCCCCCCTHHHHHHTTCEEECC
T ss_pred CCCCccchhhHhhccCCCCCCHHHHHHHcCCeEEec
Confidence 21 11 1247888999999987754
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=2.1e-06 Score=98.60 Aligned_cols=87 Identities=16% Similarity=0.122 Sum_probs=67.8
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCC-Ccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI-SID 275 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~-sis 275 (719)
..|.+|.|++.|+|+|+| . +.+|+|++|||+++ +.++.|..|..++|+.+++|+|||++ ++.
T Consensus 424 ~~g~~G~~l~~AiGaala-~--------------~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~ 486 (568)
T 2c31_A 424 TWGVMGIGMGYCVAAAAV-T--------------GKPVIAVEGDSAFG--FSGMELETICRYNLPVTVIIMNNGGIYKGN 486 (568)
T ss_dssp TTTCSSCHHHHHHHHHHH-H--------------CSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEESSBSSCSC
T ss_pred CCccccccHHHHHHHHhC-C--------------CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHH
Confidence 468899999999999998 2 46799999999996 45788999999999877777777774 543
Q ss_pred cch------hh--hcchhHHHHHhccCceEEEE
Q 005021 276 GDT------EI--AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 276 ~~~------~~--~~~~~~~~~~~a~G~~~~~v 300 (719)
... .. ....++.+.+++||++.++|
T Consensus 487 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 519 (568)
T 2c31_A 487 EADPQPGVISCTRLTRGRYDMMMEAFGGKGYVA 519 (568)
T ss_dssp CCCSBTTBCCTTBCCCCCHHHHHHTTTCEEEEE
T ss_pred HHHhhcCCcccCcCCCCCHHHHHHHcCCeEEEe
Confidence 211 00 22357899999999988776
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.7e-06 Score=99.37 Aligned_cols=87 Identities=21% Similarity=0.182 Sum_probs=67.0
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCC-Ccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI-SID 275 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~-sis 275 (719)
..|++|.|++.|+|+|+| . +.+|||++|||+++. .++.|..|.+++|+.+++|+|||++ ++.
T Consensus 419 ~~g~~G~~l~~AiGaa~a-~--------------~~~vv~i~GDGsf~~--~~~el~ta~~~~l~~~ivv~NN~~~~~~~ 481 (564)
T 2q28_A 419 TWGVMGIGMGYAIGASVT-S--------------GSPVVAIEGDSAFGF--SGMEIETICRYNLPVTIVIFNNGGIYRGD 481 (564)
T ss_dssp TTTCTTCHHHHHHHHHHH-H--------------CSCEEEEEEHHHHHT--TGGGHHHHHHTTCCEEEEEEECSBSSCSC
T ss_pred CCCcccchHHHHHHHhhc-C--------------CCcEEEEEcchHhhc--cHHHHHHHHHhCCCeEEEEEeCchhHHHH
Confidence 468899999999999997 2 467999999999965 4678999999999878888888874 553
Q ss_pred cch-------hh---hcchhHHHHHhccCceEEEE
Q 005021 276 GDT-------EI---AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 276 ~~~-------~~---~~~~~~~~~~~a~G~~~~~v 300 (719)
... .. ....++.+.+++||++.++|
T Consensus 482 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 516 (564)
T 2q28_A 482 GVDLSGAGAPSPTDLLHHARYDKLMDAFRGVGYNV 516 (564)
T ss_dssp CCCTTSSCCCCTTBCCTTCCGGGGGGGGTCEEEEE
T ss_pred HHHHhccCCccccccCCCCCHHHHHHHcCCeEEEe
Confidence 211 11 11346888899999988765
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=2.1e-05 Score=89.97 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=58.1
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
.|..|. ++.|+|+|+| . +.+|+|++|||+++ +....|+.|..++++-+++|+||++++|.+.
T Consensus 416 ~g~~G~-l~~A~Gaa~a-~--------------~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivv~NN~~~~~~~~ 477 (556)
T 3hww_A 416 SGIDGL-LSTAAGVQRA-S--------------GKPTLAIVGDLSAL--YDLNALALLRQVSAPLVLIVVNNNGGQIFSL 477 (556)
T ss_dssp CCSSSH-HHHHHHHHHH-H--------------CCCEEEEEEHHHHH--HTGGGHHHHTTCSSCEEEEEEESCC------
T ss_pred cccccH-HHHHHHHHhc-C--------------CCcEEEEEccHHhh--hcchhhHhhcccCCCcEEEEEECCCCCcccC
Confidence 344455 9999999998 2 45799999999995 4567799999999976677777777776543
Q ss_pred hh-------h----hcchhHHHHHhccCceEEEE
Q 005021 278 TE-------I----AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~-------~----~~~~~~~~~~~a~G~~~~~v 300 (719)
.. . ....++.+..++||++.+.|
T Consensus 478 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 511 (556)
T 3hww_A 478 LPTPQSERERFYLMPQNVHFEHAAAMFELKYHRP 511 (556)
T ss_dssp -----------CCCCCCCCSHHHHHHTTCEEECC
T ss_pred CCCcchhHHHhccCCCCCCHHHHHHHcCCcEEec
Confidence 21 1 11346788889999886654
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.47 E-value=4.1e-05 Score=88.02 Aligned_cols=79 Identities=10% Similarity=-0.026 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccch-----
Q 005021 204 GMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDT----- 278 (719)
Q Consensus 204 gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~----- 278 (719)
+++.|+|+|++ +.+|+|++|||+++ +.+++|+.|..++|+-+++|+|||++.+-...
T Consensus 441 ~l~~AiGaa~~----------------~~~vv~i~GDGsf~--~~~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~ 502 (578)
T 3lq1_A 441 VVSSALGASVV----------------FQPMFLLIGDLSFY--HDMNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANE 502 (578)
T ss_dssp HHHHHHHHTTT----------------SSSEEEEEEHHHHH--HTGGGGHHHHHTTCCEEEEEECCC-------------
T ss_pred HHHHHHHHhcC----------------CCCEEEEEchHHHH--hhHHHHHhhccCCCCeEEEEEECCcCccccccccccc
Confidence 68999998631 46799999999996 55778999999999766677777788775421
Q ss_pred ----hhh----cchhHHHHHhccCceEEEE
Q 005021 279 ----EIA----FTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 279 ----~~~----~~~~~~~~~~a~G~~~~~v 300 (719)
+.. ...++.+..++||++.++|
T Consensus 503 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 532 (578)
T 3lq1_A 503 PKYFESLFGTSTELDFRFAAAFYDADYHEA 532 (578)
T ss_dssp ------------CCCTHHHHHHTTCEEEEC
T ss_pred cchhhhhccCCCCCCHHHHHHHcCCceEec
Confidence 000 1236788889999987765
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.34 Score=55.50 Aligned_cols=114 Identities=8% Similarity=-0.088 Sum_probs=81.2
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCcc-CCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGL-GEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~-g~dG~THq~~ed 534 (719)
|++- ...|++++-+|.|+|+... +|.+ .+..+-+.-++..|.++-+.+.||+++........ |. | .+|.+..
T Consensus 45 ~~i~-~~~E~~Aa~~A~GyAr~tg--k~~v~~~tsGpG~~N~~~gl~~A~~~~vPll~Itg~~p~~~~g~-~-~~Q~~d~ 119 (590)
T 1v5e_A 45 KFLQ-VKHEEVGAMAAVMQSKFGG--NLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNM-D-AFQELNQ 119 (590)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHTTC--CCCEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTTT-T-CTTCCCC
T ss_pred eEEe-eCCHHHHHHHHHHHHHHHC--CCEEEEeCcChHHHHHHHHHHHHHhcCCCEEEEcCCCCcccCCC-C-cccccCH
Confidence 4444 4899999999999999753 5544 45667777778888887778999998875443332 32 2 3677777
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQK 578 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~~~P~~irl~r~~ 578 (719)
..+++.+-.. .+.+.+++++..+++.|+ ....+||+| +|..-
T Consensus 120 ~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 120 NPMYDHIAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp HHHHHTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred HHHHHhhccE-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence 8999998766 566677777666666554 334599999 98853
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=91.44 E-value=0.69 Score=52.63 Aligned_cols=117 Identities=20% Similarity=0.112 Sum_probs=80.9
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
=|++- ..-|++++-+|-|+|+... +|.+ .+..+=..-++..|.++-+.+.||+++........-..+..||.+..
T Consensus 49 i~~i~-~~~E~~Aa~~A~Gyar~tg--~p~v~~~TsGpG~~N~~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q~~d~ 125 (573)
T 2iht_A 49 IDFVL-TRHEFTAGVAADVLARITG--RPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDS 125 (573)
T ss_dssp CEEEE-CSSHHHHHHHHHHHHHHHC--SCEEEEECTTHHHHHHHHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTTCCCH
T ss_pred CeEEe-eCCHHHHHHHHHHHHHHHC--CCEEEEEccCchHHHHHHHHHHHHhhCCCEEEEcccCcccccCCcCccccCCH
Confidence 34444 4899999999999998642 6654 45666666777788888888999998874433332112135888888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
..+++.+-.... ...+++++...++.|++ ...|||+|-+|..
T Consensus 126 ~~~~~~~~k~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (573)
T 2iht_A 126 VAIVAPMSKYAV-ELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVD 171 (573)
T ss_dssp HHHHGGGSSEEE-ECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred HHHHHhHhhEEE-EcCCHHHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 999998886554 44456666666665553 2359999999864
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=91.36 E-value=0.57 Score=53.56 Aligned_cols=115 Identities=14% Similarity=0.085 Sum_probs=80.1
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|++.+ .-|++++-+|-|+|+... +|.+ .|..+-..-++..|.++-+.+.||+++........-..|..||.+...
T Consensus 45 ~~v~~-~hE~~Aa~~A~GyAr~tg--~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q~~d~~ 121 (589)
T 2pgn_A 45 RVINP-ATELGGAWMVNGYNYVKD--RSAAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQ 121 (589)
T ss_dssp TCBCC-SSHHHHHHHHHHHHHHHT--SCCEEEEEEGGGGGGCHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSSCCCGG
T ss_pred eEEEe-CcHHHHHHHHHHHHHHHC--CCEEEEEecCchHHHHHHHHHHHHhcCCCEEEEecCCcccccCCCCcccccChh
Confidence 56655 899999999999998632 5533 567777777788888888899999988744333321122168888888
Q ss_pred hHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 536 ASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 536 a~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
. ++.+-.... ...+++++...++.|++ ...|||+|-+|..
T Consensus 122 ~-~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 122 S-FTPIARSTQ-RVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp G-GTTTSSEEE-ECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred h-ccccEEEEe-ecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 8 888876544 34456666665555543 2458999999874
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=91.34 E-value=0.82 Score=51.84 Aligned_cols=115 Identities=16% Similarity=0.072 Sum_probs=79.8
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCC-h
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQP-I 532 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~-~ 532 (719)
=|++.+ ..|++++-+|-|+|+. | +|.+ .+..+=+..++..|.++-+.+.||+++........-..| .||. +
T Consensus 42 i~~i~~-~~E~~Aa~~A~Gyar~tg---~p~v~~~TsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~~~~-~~Q~~~ 116 (563)
T 2uz1_A 42 VPIIDT-RHEAAAGHAAEGYARAGA---KLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETN-TLQAGI 116 (563)
T ss_dssp CCEEEC-SSHHHHHHHHHHHHHHHT---SCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTTSC-CTTCCC
T ss_pred CcEEee-CCHHHHHHHHHHHHHHhC---CCEEEEEccCccHHHHHHHHHHHHhcCCCEEEEeCCCCcccCCch-hhhhhc
Confidence 456654 8999999999999986 6 5544 356555667777787777789999988744333322123 3787 8
Q ss_pred hhhhHHcCCCCeEEEeeCCHHHHHHHHHHHH----HcCCCcEEEEEcCC
Q 005021 533 EHLASFRAMPNILMLRPADGNETAGAYKVAV----ANRKRPSILALSRQ 577 (719)
Q Consensus 533 edia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~~~P~~irl~r~ 577 (719)
....+++.+-... +...+++++..+++.|+ ....|||+|-+|..
T Consensus 117 d~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 117 DQVAMAAPITKWA-HRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp CHHHHHGGGCSEE-EECCCGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred cHHHHhhhhhceE-EEcCCHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 8889999887654 44456666666555554 33469999999875
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=90.42 E-value=0.84 Score=51.84 Aligned_cols=113 Identities=11% Similarity=0.054 Sum_probs=75.8
Q ss_pred CccccccccchHHHHHHHHHhc-CCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 458 RNVRFGVREHGMGAICNGIALH-SPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
|++.+ .-|++++-+|-|+|+. | +|.+ .+..+=+.-++..|.++-+.+.||+++....... .|. ..||.+.
T Consensus 50 ~~v~~-~~E~~Aa~~A~Gyar~tg---~p~v~~~TsGpG~~N~~~~l~~A~~~~vPll~itg~~~~~~~~~--~~~Q~~d 123 (566)
T 1ozh_A 50 RIIPV-RHEANAAFMAAAVGRITG---KAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAK--QVHQSMD 123 (566)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS---SCEEEEECSTHHHHTTHHHHHHHHHHTCCEEEEEEECCTTTC--------CCC
T ss_pred cEEEe-CCHHHHHHHHHHHHHHHC---CCEEEEEccChHHHHHHHHHHHHHhcCCCEEEEeCCCccccCCC--CcccccC
Confidence 55555 8999999999999985 6 5644 3566666677777877778899999887433332 232 3478888
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHH----HHHcCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKV----AVANRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~----a~~~~~~P~~irl~r~ 577 (719)
...+++.+..... ...+++++...++. |.....|||+|-+|..
T Consensus 124 ~~~~~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 124 TVAMFSPVTKYAI-EVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp HHHHHGGGCSEEE-ECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHHHhheEE-EcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 8899998876543 44556666555554 4433469999999874
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
Probab=90.34 E-value=1.1 Score=50.98 Aligned_cols=114 Identities=15% Similarity=0.050 Sum_probs=81.8
Q ss_pred CccccccccchHHHHHHHHHhc-CCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALH-SPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
|++.+ .-|++++.+|-|+|+. | +|.+ .++.+=..-++..|.++-+.+.||+++........-..| .+|.+..
T Consensus 52 ~~i~~-~~E~~Aa~~A~Gyar~tg---~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~g~~-~~Q~~d~ 126 (590)
T 1ybh_A 52 RNVLP-RHEQGGVFAAEGYARSSG---KPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTD-AFQETPI 126 (590)
T ss_dssp EECCC-SSHHHHHHHHHHHHHHHS---SCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTTTT-CTTCCCH
T ss_pred cEEee-CCHHHHHHHHHHHHHHHC---CCEEEEeccCchHHHHHHHHHHHHhhCCCEEEEeCcCCccccCCC-cccccCH
Confidence 55554 8999999999999986 6 5544 356555566677777777889999988743333322123 4777888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
..+++.+-... +...+++++..+++.|++. ..|||+|-+|..
T Consensus 127 ~~~~~~~~k~~-~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 127 VEVTRSITKHN-YLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp HHHHGGGSSEE-EECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHHhCeE-EecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence 89999888764 4556777888888777642 368999998863
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
Probab=89.58 E-value=1.1 Score=50.84 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=81.3
Q ss_pred CccccccccchHHHHHHHHHhc-CCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 458 RNVRFGVREHGMGAICNGIALH-SPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
|++- ..-|++++-+|-|+|+. | +|-+ .|..+=...++..|.++-+.+.||+++....... .|. | .||.+.
T Consensus 48 ~~i~-~~hE~~Aa~~AdGyAr~tG---~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~~~~~~~g~-~-~~Q~~d 121 (556)
T 3hww_A 48 IHHT-HFDERGLGHLALGLAKVSK---QPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDC-G-ANQAIR 121 (556)
T ss_dssp EEEE-CSCHHHHHHHHHHHHHHHC---SCEEEEECSSHHHHTTHHHHHHHHHHCCCEEEEEEECCGGGSSS-S-CTTCCC
T ss_pred eEEE-ecCCcHHHHHHHHHHHhhC---CCEEEEECCCcHHHhhhHHHHHHHHhCCCeEEEeCCCCHHHhcc-C-CCcccc
Confidence 5554 46899999999999985 6 5544 3566666677777777778899999887433333 232 3 488888
Q ss_pred hhhHHcCCCCeEEEee--CC---HHHHHHHHHHHHHc-CCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRP--AD---GNETAGAYKVAVAN-RKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P--~d---~~e~~~~l~~a~~~-~~~P~~irl~r~ 577 (719)
+..+++.+-......+ .+ ++++..+++.|+.. ..|||+|-+|..
T Consensus 122 ~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~GPV~i~iP~d 171 (556)
T 3hww_A 122 QPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFA 171 (556)
T ss_dssp CTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHHSCCSSCEEEEEECC
T ss_pred HHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHhcCCCCCEEEeCCcC
Confidence 8889998876655443 32 35688899988852 458999999974
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=89.31 E-value=1.1 Score=50.24 Aligned_cols=115 Identities=16% Similarity=0.134 Sum_probs=75.0
Q ss_pred CccccccccchHHHHHHHHHhc-CCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 458 RNVRFGVREHGMGAICNGIALH-SPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
|++. ...|++++.+|.|+|+. | +|.++ +..+=+.-++..|.++-+.+.||+++....... .+. |+.++.+.
T Consensus 40 ~~i~-~~~E~~Aa~~A~Gyar~tg---~~~v~~~tsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~~~-~~~q~~~d 114 (528)
T 1q6z_A 40 RYIL-ALQEACVVGIADGYAQASR---KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGV-EALLTNVD 114 (528)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHT---SCEEEEEEHHHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHHTT-TCTTCCTT
T ss_pred cEEE-ECcHHHHHHHHHHHHHHhC---CCEEEEEcCChHHHHHHHHHHHHhhcCCCEEEEeCCCcccccCC-Cccccccc
Confidence 5554 48999999999999997 6 55443 444555566777777777899999886433332 243 32222257
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHH----HHHHHHHcCCCcEEEEEcCCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAG----AYKVAVANRKRPSILALSRQK 578 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~----~l~~a~~~~~~P~~irl~r~~ 578 (719)
...+++.+-... +.+.+++++.. +++.|.....|||+|-+|...
T Consensus 115 ~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~ 162 (528)
T 1q6z_A 115 AANLPRPLVKWS-YEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD 162 (528)
T ss_dssp GGGSSTTSCSCE-ECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred HHHHHHHhhHhh-hcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 778888877654 34445554444 444555445689999998753
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=88.67 E-value=0.94 Score=51.90 Aligned_cols=115 Identities=14% Similarity=0.081 Sum_probs=78.6
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++-+ .-|++++-+|-|+|+... +|.+ .|..+=..-++..|.++-+.+.||+++....... .|. | .+|.+..
T Consensus 71 ~~i~~-~hE~~Aa~aA~GyAr~tg--kpgv~~~TsGpG~~N~~~gia~A~~~~vPlv~ItG~~~~~~~g~-~-~~Q~~d~ 145 (604)
T 2x7j_A 71 SVHVQ-IDERSAGFFALGLAKAKQ--RPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELREV-G-APQAINQ 145 (604)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHT--SCEEEEECSSHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGSSS-C-CTTCCCC
T ss_pred eEEEe-cChHHHHHHHHHHHHhhC--CCEEEEECChhHHHHHHHHHHHHhhcCCCEEEEeCCCCHHHhCC-C-CCCcCcH
Confidence 56555 899999999999998532 6644 4566666677777877778899999887433332 232 2 3677777
Q ss_pred hhHHcCCCCeEEEe--eCC--------HHHHHHHHHHHHHcCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLR--PAD--------GNETAGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~--P~d--------~~e~~~~l~~a~~~~~~P~~irl~r~ 577 (719)
..+++.+-...... |.+ +..+..+++.|.....|||+|-+|..
T Consensus 146 ~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 146 HFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp TTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred HHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence 78888776654433 444 33555566666543579999999875
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=88.36 E-value=1.4 Score=51.33 Aligned_cols=113 Identities=13% Similarity=0.041 Sum_probs=80.1
Q ss_pred CccccccccchHHHHHHHHHhc-CCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALH-SPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
|++-+ .-|++++-+|-|+|+. | +|.+ .++.+=..-++..|.++-+.++||+++........-..| .+|.+..
T Consensus 122 ~~v~~-~hE~~Aa~aAdGyAr~tG---kpgvv~~TsGpG~~N~~~gia~A~~d~vPllvItG~~~~~~~g~~-a~Q~~Dq 196 (677)
T 1t9b_A 122 NFVLP-KHEQGAGHMAEGYARASG---KPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTD-AFQEADV 196 (677)
T ss_dssp EEECC-SSHHHHHHHHHHHHHHHS---SCEEEEECSTHHHHTTHHHHHHHHHHTCCEEEEEEECCTTTTTSC-CTTCCCH
T ss_pred eEEEe-CChHHHHHHHHHHHHHHC---CCEEEEECCChHHHHHHHHHHHHHHcCCCEEEEeCCCChhhcCCC-CccccCH
Confidence 56654 8999999999999986 5 5644 456666667777787777889999988743333221122 4677888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSR 576 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r 576 (719)
..+++.+-...+. ..+++++...++.|++ ...|||+|-+|+
T Consensus 197 ~~i~~~~tk~~~~-v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP~ 241 (677)
T 1t9b_A 197 VGISRSCTKWNVM-VKSVEELPLRINEAFEIATSGRPGPVLVDLPK 241 (677)
T ss_dssp HHHTGGGSSEEEE-CCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred HHHhhhheeEEEE-cCCHHHHHHHHHHHHHHHhhCCCceEEEEcCH
Confidence 8899887766544 4467777777776664 247999999984
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.01 E-value=2 Score=49.17 Aligned_cols=115 Identities=10% Similarity=0.049 Sum_probs=80.6
Q ss_pred CccccccccchHHHHHHHHHhc-CCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALH-SPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
|++- ...|++++-+|-|+|+. |. +|.+ .+..+=..-++..|.++.+.+.||+++........-..| .+|.+..
T Consensus 67 ~~i~-~~~E~~Aa~~A~GyAr~tgg--~~~v~~~TsGpG~~N~~~~l~~A~~~~vPlvvItg~~p~~~~~~~-~~Q~~d~ 142 (616)
T 2pan_A 67 RHIL-ARHVEGASHMAEGYTRATAG--NIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARLHKE-DFQAVDI 142 (616)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHSTT--CCEEEEECSTHHHHTSHHHHHHHHHTTCCEEEEEEECCGGGTTTT-CTTCCCH
T ss_pred cEEe-eCCHHHHHHHHHHHHHhcCC--CceEEEeCCCchHHHHHHHHHHHHhcCCCEEEEecCCcccccCcc-cccccCH
Confidence 4444 48999999999999986 33 5543 456666667778888888889999988744333322223 3666777
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~ 577 (719)
..+++.+-.... ...++.++..+++.|++. ..|||+|-+|..
T Consensus 143 ~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d 188 (616)
T 2pan_A 143 EAIAKPVSKMAV-TVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFD 188 (616)
T ss_dssp HHHHGGGSSEEE-ECCSGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred HHHHHHHHHhhc-ccCCHHHHHHHHHHHHHHHhcCCCceEEEEcchh
Confidence 889998876654 445677777777776642 368999998763
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=87.27 E-value=0.91 Score=51.52 Aligned_cols=115 Identities=10% Similarity=-0.010 Sum_probs=78.1
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCC-CCCCCCC
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGE-DGPTHQP 531 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~-dG~THq~ 531 (719)
=|++.+ .-|++++-+|-|+|+. | +|.+ .+..+=..-++..|.++-+.+.||+++....... .|. .| .+|.
T Consensus 48 i~~i~~-~~E~~Aa~~A~GyAr~tg---~pgv~~~TsGpG~~N~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~ 122 (568)
T 2c31_A 48 QRFYSF-RHEQHAGYAASIAGYIEG---KPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQG-DYEE 122 (568)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHS---SCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTCC-CTTC
T ss_pred CcEEEe-CcHHHHHHHHHHHHHHhC---CCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEccCCCccccCCCCC-cccc
Confidence 455555 8999999999999987 6 5644 3566656667777877778899999887432222 231 23 4677
Q ss_pred hhhhhHHcCCCCeEEEeeCCHHHHHHHHH----HHHHcCCCcEEEEEcCC
Q 005021 532 IEHLASFRAMPNILMLRPADGNETAGAYK----VAVANRKRPSILALSRQ 577 (719)
Q Consensus 532 ~edia~lr~iPnl~V~~P~d~~e~~~~l~----~a~~~~~~P~~irl~r~ 577 (719)
+.+..+++.+-...... .+++++...+. .|.....|||+|-+|..
T Consensus 123 ~dq~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (568)
T 2c31_A 123 MDQMNVARPHCKASFRI-NSIKDIPIGIARAVRTAVSGRPGGVYVDLPAK 171 (568)
T ss_dssp CCHHHHSGGGSSEEEEC-CSGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred cCHHHHHHhhhheeeec-CCHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence 77888999887665443 45545555444 44432579999999875
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=87.25 E-value=2 Score=48.51 Aligned_cols=111 Identities=14% Similarity=0.023 Sum_probs=76.1
Q ss_pred CccccccccchHHHHHHHHHhc-CCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 458 RNVRFGVREHGMGAICNGIALH-SPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
|++.+ .-|++++-+|-|+|+. | +|.+ .++.+=..-++..|.++-..+.||+++....... .| .| .+|-+.
T Consensus 43 ~~i~~-~~E~~Aa~~A~GyAr~tg---~~~v~~~TsGpG~~N~~~gi~~A~~~~vPvl~itg~~~~~~~~-~~-~~Q~~d 116 (549)
T 3eya_A 43 EWMST-RHEEVAAFAAGAEAQLSG---ELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIG-SG-YFQETH 116 (549)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS---SCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEESCGGGTT-SC-CTTCCC
T ss_pred eEEEe-CChHHHHHHHHHHHHHhC---CCEEEEeCCCCcHhhhHHHHHHHHhhCCCEEEEeCCCchhhcC-CC-CCCccC
Confidence 55554 7999999999999985 5 5554 3566656667777877778899999887433322 23 23 367778
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHH----HHHHHHHcCCCcEEEEEcC
Q 005021 534 HLASFRAMPNILMLRPADGNETAG----AYKVAVANRKRPSILALSR 576 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~----~l~~a~~~~~~P~~irl~r 576 (719)
+..+++.+-..... ..+++++.. +++.|.. ..+|++|-+|.
T Consensus 117 ~~~~~~~~tk~~~~-v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~ 161 (549)
T 3eya_A 117 PQELFRECSHYCEL-VSSPEQIPQVLAIAMRKAVL-NRGVSVVVLPG 161 (549)
T ss_dssp HHHHTSTTCSEEEE-CCSGGGHHHHHHHHHHHHHH-TTSEEEEEEEH
T ss_pred HHHHHhhhhheEEE-eCCHHHHHHHHHHHHHHHhh-CCCCEEEEeCh
Confidence 88999988765433 345555444 4455554 57999999886
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=87.09 E-value=1.4 Score=50.04 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=77.8
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|++-+ .-|++++-+|-|+|+... +|-+ .|..+=..-++..|.++-+.+.||+++........-..| .+|-+...
T Consensus 51 ~~i~~-~hE~~Aa~aAdGyAr~tG--~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~~p~~~~g~~-~~Qe~d~~ 126 (578)
T 3lq1_A 51 KIYVD-VDERSAGFFALGLAKASK--RPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELRNVG-APQAMDQL 126 (578)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHC--CCEEEEECSSHHHHTTHHHHHHHHHTTCCEEEEEEECCGGGTTSS-CTTCCCCT
T ss_pred eEEEe-cCcHHHHHHHHHHHHhhC--CCEEEEECCchhhhhhhHHHHHHHhcCCCeEEEeCCCCHHhhcCC-CCCCcCHh
Confidence 56655 799999999999997532 5554 355555566677777777889999988743222221123 46777777
Q ss_pred hHHcCCCCeEEE--eeCCHH--------HHHHHHHHHHHcCCCcEEEEEcCC
Q 005021 536 ASFRAMPNILML--RPADGN--------ETAGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 536 a~lr~iPnl~V~--~P~d~~--------e~~~~l~~a~~~~~~P~~irl~r~ 577 (719)
.+++.+-..... .|.+.. .+..+++.|.....|||+|-+|..
T Consensus 127 ~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 127 HLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLR 178 (578)
T ss_dssp TTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEECC
T ss_pred hHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECccC
Confidence 888877665433 455533 355666666644589999999974
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=86.28 E-value=3.3 Score=46.90 Aligned_cols=119 Identities=18% Similarity=0.100 Sum_probs=74.5
Q ss_pred CCCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCC-CCC
Q 005021 456 EERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPT-HQP 531 (719)
Q Consensus 456 p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~T-Hq~ 531 (719)
+.+.+-...-|++++-+|-|+|+... +|.+ .+..+=..-++..|.++-+.+.||+++....... .|.+... ||.
T Consensus 58 ~~~~~i~~~~E~~Aa~~A~GyAr~tg--kp~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~ 135 (565)
T 2nxw_A 58 QILPLHTLSHEPAVGFAADAAARYSS--TLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQG 135 (565)
T ss_dssp CSSCEEECSSHHHHHHHHHHHHHHHT--SCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTCC--CCCC----
T ss_pred CCcEEEecCcHHHHHHHHHHHHHHhC--CCeEEEECCCCCHHHHHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeec
Confidence 44444556999999999999998632 5644 3566656667777777778899999887443333 3433333 433
Q ss_pred --hh-hhhHHcCCCCeEEEe--eCCH-HHHHHHHHHHHHcCCCcEEEEEcCC
Q 005021 532 --IE-HLASFRAMPNILMLR--PADG-NETAGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 532 --~e-dia~lr~iPnl~V~~--P~d~-~e~~~~l~~a~~~~~~P~~irl~r~ 577 (719)
+. +..+++.+-...... |.+. ..+..+++.|... .+||+|-+|+.
T Consensus 136 q~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~D 186 (565)
T 2nxw_A 136 RTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQ-SRPVYLEIPRN 186 (565)
T ss_dssp ---CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHHHH-TCCEEEEEEGG
T ss_pred cchhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHHhC-CCCEEEECChh
Confidence 33 578898876644333 3332 3455566666643 69999999964
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=86.18 E-value=3.3 Score=46.85 Aligned_cols=117 Identities=16% Similarity=0.053 Sum_probs=75.9
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCC-----
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQP----- 531 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~----- 531 (719)
|++-+ .-|++++-+|-|+|+... .-.++.+..+=..-++..|.++-+.+.||+++....... .+.+...||.
T Consensus 43 ~~i~~-~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~ 120 (568)
T 2wvg_A 43 EQVYC-CNELNCGFSAEGYARAKG-AAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTD 120 (568)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSC
T ss_pred eEecc-CcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHHHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccc
Confidence 56655 899999999999998741 122334566655667777777777899999887443333 2433334553
Q ss_pred -hhhhhHHcCCCCeEEEeeCCHHHHH----HHHHHHHHcCCCcEEEEEcCCC
Q 005021 532 -IEHLASFRAMPNILMLRPADGNETA----GAYKVAVANRKRPSILALSRQK 578 (719)
Q Consensus 532 -~edia~lr~iPnl~V~~P~d~~e~~----~~l~~a~~~~~~P~~irl~r~~ 578 (719)
+....+++.+--.. +...+++++. .+++.|... .+||+|-+|...
T Consensus 121 ~~d~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~A~~~-~GPV~l~iP~dv 170 (568)
T 2wvg_A 121 YHYQLEMAKNITAAA-EAIYTPEEAPAKIDHVIKTALRE-KKPVYLEIACNI 170 (568)
T ss_dssp CCHHHHHHTTSCSCE-EEECSGGGHHHHHHHHHHHHHHH-TCCEEEEEEGGG
T ss_pred hHHHHHHHHhhEeEE-EEeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhH
Confidence 24578898877654 3334444444 455556543 599999998753
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=86.02 E-value=3.4 Score=46.74 Aligned_cols=116 Identities=17% Similarity=0.152 Sum_probs=75.0
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE-EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCCh---
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI--- 532 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~-~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~--- 532 (719)
|++. ...|++++.+|-|+|+.. | ..+| .+..+=..-++..|.++-+.+.||+++....... .+.+-..||.+
T Consensus 43 ~~v~-~~~E~~Aa~~A~Gyar~t-g-~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~ 119 (566)
T 2vbi_A 43 KQIY-CCNELNCGFSAEGYARSN-G-AAAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKT 119 (566)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHH-S-CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred eEEe-eCcHHHHHHHHHHHHhhc-C-CeEEEEeCCCCHHHHHHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCc
Confidence 5555 489999999999999874 2 3344 4556555666777777777899999887443333 23332345432
Q ss_pred ---hhhhHHcCCCCeEEEeeCCHH----HHHHHHHHHHHcCCCcEEEEEcCCC
Q 005021 533 ---EHLASFRAMPNILMLRPADGN----ETAGAYKVAVANRKRPSILALSRQK 578 (719)
Q Consensus 533 ---edia~lr~iPnl~V~~P~d~~----e~~~~l~~a~~~~~~P~~irl~r~~ 578 (719)
....+++.+--... .+.+++ .+..+++.|... .+||+|-+|...
T Consensus 120 ~~~d~~~~~~~~tk~~~-~v~~~~~~~~~l~~A~~~a~~~-~GPV~l~iP~d~ 170 (566)
T 2vbi_A 120 DYSYQLEMARQVTCAAE-SITDAHSAPAKIDHVIRTALRE-RKPAYLDIACNI 170 (566)
T ss_dssp CCTHHHHHHHTTCSEEE-EECSSSSHHHHHHHHHHHHHHH-TCCEEEEEETTT
T ss_pred chHHHHHHHhhhEeEEE-EeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhh
Confidence 45788998865433 333333 345566666654 599999998753
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=85.70 E-value=2.5 Score=47.74 Aligned_cols=116 Identities=12% Similarity=0.087 Sum_probs=78.1
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCC-CCCCCCCh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGE-DGPTHQPI 532 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~-dG~THq~~ 532 (719)
=|++.+ .-|++++-+|-|+|+... +|.+ .|..+=..-++..|.++-+.+.||+++....... .+. .| .+|.+
T Consensus 46 i~~i~~-~hE~~Aa~~A~Gyar~tg--~pgv~~~TsGpG~~N~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~ 121 (564)
T 2q28_A 46 IRYIGF-RHEQSAGYAAAASGFLTQ--KPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQG-DYEEL 121 (564)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHS--SCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTSC-CTTCC
T ss_pred CcEEee-CCHHHHHHHHHHHHHHhC--CCEEEEEccCchHHHHHHHHHHHHhcCCCEEEEeCCCCccccCCCCC-ccccc
Confidence 355555 899999999999998732 6644 4566656667777777778899999887432222 121 23 46777
Q ss_pred hhhhHHcCCCCeEEEeeCCHHHHHHHH----HHHHHcCCCcEEEEEcCC
Q 005021 533 EHLASFRAMPNILMLRPADGNETAGAY----KVAVANRKRPSILALSRQ 577 (719)
Q Consensus 533 edia~lr~iPnl~V~~P~d~~e~~~~l----~~a~~~~~~P~~irl~r~ 577 (719)
.+..+++.+-...... .+++++...+ +.|.....|||+|-+|..
T Consensus 122 dq~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 122 DQMNAAKPYAKAAFRV-NQPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp CHHHHHGGGSSEEEEC-CSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred cHHHHHHHhhheeeec-CCHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 8888999887765444 3444454444 444433579999999875
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* | Back alignment and structure |
|---|
Probab=85.41 E-value=3.9 Score=46.18 Aligned_cols=115 Identities=18% Similarity=0.103 Sum_probs=76.2
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE-EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCCh---
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI--- 532 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~-~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~--- 532 (719)
|++-+ .-|++++-+|-|+|+... .++| .+..+=..-++..|.++-+.+.||+++....... .+.+-..||.+
T Consensus 44 ~~v~~-~~E~~Aa~~A~Gyar~tg--~~v~~~TsGpG~~N~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~ 120 (563)
T 2vk8_A 44 RWAGN-ANELNAAYAADGYARIKG--MSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNG 120 (563)
T ss_dssp EECCC-SSHHHHHHHHHHHHHHHS--CEEEEEETTHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSS
T ss_pred eEEcc-CchHHHHHHHHHHHHhhC--CcEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCc
Confidence 55554 899999999999998752 4444 4566655666777777777899999887433222 12233334322
Q ss_pred ---hhhhHHcCCCCeEEEeeCC----HHHHHHHHHHHHHcCCCcEEEEEcCC
Q 005021 533 ---EHLASFRAMPNILMLRPAD----GNETAGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 533 ---edia~lr~iPnl~V~~P~d----~~e~~~~l~~a~~~~~~P~~irl~r~ 577 (719)
+...+++.+--..... .+ +..+..+++.|... .+||+|-+|..
T Consensus 121 ~~q~~~~~~~~~~k~~~~v-~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~d 170 (563)
T 2vk8_A 121 DFTVFHRMSANISETTAMI-TDIATAPAEIDRCIRTTYVT-QRPVYLGLPAN 170 (563)
T ss_dssp CSSHHHHHHHTTCSEEEEC-CCTTTHHHHHHHHHHHHHHH-TSCEEEEEETT
T ss_pred chHHHHHHhhhhEEEEEEe-CCHHHHHHHHHHHHHHHHhC-CCCEEEEechh
Confidence 3467888877654433 34 35566677777754 59999999875
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=85.22 E-value=3.3 Score=47.31 Aligned_cols=114 Identities=8% Similarity=-0.046 Sum_probs=76.3
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIEH 534 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ed 534 (719)
|++-+ .-|++++-+|-|+|+... +|.+ .++.+=..-++..|.++-+.+.||+++....... .+. | .+|-+..
T Consensus 52 ~~i~~-~hE~~Aa~aA~GyAr~tg--~~gv~~~TsGpG~~N~~~gia~A~~~~vPvl~itG~~~~~~~~~-~-~~Q~~d~ 126 (603)
T 4feg_A 52 HYIQV-RHEEVGAMAAAADAKLTG--KIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNM-D-TFQEMNE 126 (603)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS--SCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTTTTS-C-CTTCCCC
T ss_pred eEEEe-cChHHHHHHHHHHHHHhC--CceEEEecCCchHHHHHHHHHHHHHcCCCEEEEecCCcccccCC-C-ccccccH
Confidence 56554 899999999999997532 5544 3566656667777877778899999887432222 232 2 3566777
Q ss_pred hhHHcCCCCeEEE--eeCCH-HHHHHHHHHHHHcCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILML--RPADG-NETAGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~--~P~d~-~e~~~~l~~a~~~~~~P~~irl~r~ 577 (719)
..+++.+-..... .|.+. ..+..+++.|.. ..||++|-+|..
T Consensus 127 ~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~d 171 (603)
T 4feg_A 127 NPIYADVADYNVTAVNAATLPHVIDEAIRRAYA-HQGVAVVQIPVD 171 (603)
T ss_dssp GGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHH-HTSEEEEEEETT
T ss_pred HHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhc-CCCCEEEEeChh
Confidence 7888887665433 33332 234455666665 479999999874
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* | Back alignment and structure |
|---|
Probab=80.23 E-value=5.5 Score=45.03 Aligned_cols=114 Identities=11% Similarity=0.086 Sum_probs=73.9
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEE-EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCCh---
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYC-ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI--- 532 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~-~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~--- 532 (719)
|++- ...|++++.+|.|+|+.. | ..+| .+..+-..-++..|.++-+.+.||+++....... .+.+...||.+
T Consensus 65 ~~i~-~~~E~~A~~~A~GyAr~t-G-~~v~~~tsGpG~~N~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~ 141 (570)
T 2vbf_A 65 KWIG-NANELNASYMADGYARTK-K-AAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADG 141 (570)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHH-S-CEEEEEETTHHHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSS
T ss_pred eEEC-cCcHHHHHHHHHHHHHHh-C-CeEEEEcCCCCHHHHHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeecccc
Confidence 4444 489999999999999653 1 3333 5677766677777777777899999887433322 23333455522
Q ss_pred ---hhhhHHcCCCCeEEEeeCCHHHHH----HHHHHHHHcCCCcEEEEEcCC
Q 005021 533 ---EHLASFRAMPNILMLRPADGNETA----GAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 533 ---edia~lr~iPnl~V~~P~d~~e~~----~~l~~a~~~~~~P~~irl~r~ 577 (719)
+...+++.+.-.....+. +++. .+++.|... .+||+|-+|..
T Consensus 142 ~~~~~~~~~~~~tk~~~~v~~--~~~~~~l~~A~~~A~~~-~GPV~l~iP~d 190 (570)
T 2vbf_A 142 DFKHFMKMHEPVTAARTLLTA--ENATYEIDRVLSQLLKE-RKPVYINLPVD 190 (570)
T ss_dssp CCCHHHHHTGGGCSEEEECCT--TTHHHHHHHHHHHHHHH-CCCEEEEEEHH
T ss_pred chHHHHHHhhhhEEEEEEECc--ccHHHHHHHHHHHHhhC-CCCEEEEcchh
Confidence 246788887765544443 4444 445555543 59999999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 719 | ||||
| d1gpua1 | 335 | c.36.1.10 (A:3-337) Transketolase (TK), PP module | 1e-108 | |
| d1itza1 | 338 | c.36.1.10 (A:10-347) Transketolase (TK), PP module | 1e-108 | |
| d2r8oa2 | 331 | c.36.1.10 (A:2-332) Transketolase (TK), PP module | 1e-104 | |
| d1r9ja2 | 336 | c.36.1.10 (A:1-336) Transketolase (TK), PP module | 2e-94 | |
| d1itza2 | 192 | c.36.1.6 (A:348-539) Transketolase (TK), Pyr modul | 4e-65 | |
| d2ieaa2 | 415 | c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 com | 6e-58 | |
| d1gpua2 | 197 | c.36.1.6 (A:338-534) Transketolase (TK), Pyr modul | 7e-57 | |
| d1r9ja1 | 190 | c.36.1.6 (A:337-526) Transketolase (TK), Pyr modul | 8e-53 | |
| d2r8oa1 | 195 | c.36.1.6 (A:333-527) Transketolase (TK), Pyr modul | 5e-42 | |
| d1itza3 | 136 | c.48.1.1 (A:540-675) Transketolase (TK), C-domain | 5e-36 | |
| d2r8oa3 | 136 | c.48.1.1 (A:528-663) Transketolase (TK), C-domain | 8e-32 | |
| d1r9ja3 | 143 | c.48.1.1 (A:527-669) Transketolase (TK), C-domain | 9e-32 | |
| d1gpua3 | 146 | c.48.1.1 (A:535-680) Transketolase (TK), C-domain | 4e-31 | |
| d2ieaa3 | 186 | c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 com | 2e-22 |
| >d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 330 bits (847), Expect = e-108
Identities = 174/333 (52%), Positives = 221/333 (66%), Gaps = 35/333 (10%)
Query: 89 EKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSA 148
+ +V+TIR LAVD V KANSGHPG P+G AP H+L+ + MR NP NP W NRDRFVLS
Sbjct: 7 KLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSN 65
Query: 149 GHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANA 208
GH L Y++LHL GYD + +DLK FRQ GS+TPGHPE FE PG+EVTTGPLGQG++NA
Sbjct: 66 GHAVALLYSMLHLTGYD-LSIEDLKQFRQLGSRTPGHPE-FELPGVEVTTGPLGQGISNA 123
Query: 209 VGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYD 268
VG+A+A+ +LAA YNKP + D+YTYV LGDGC EGI++EASSLAGHL LG LIA YD
Sbjct: 124 VGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYD 183
Query: 269 DNHISIDGDTEIAFTENVDKRFEGLGWHVIWV---------------------------- 300
DN I+IDG T I+F E+V KR+E GW V++V
Sbjct: 184 DNKITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIK 243
Query: 301 -TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAE- 357
TTTIG+GS + A S+SVHG+ L A +V + G+ P + F VP++V H+ + + +
Sbjct: 244 MTTTIGYGSLH-AGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKP 302
Query: 358 GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQ 390
G +WN F+EY+KK+PE AE SGQ
Sbjct: 303 GVEANNKWNKLFSEYQKKFPELGAELARRLSGQ 335
|
| >d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Maize (Zea mays) [TaxId: 4577]
Score = 330 bits (847), Expect = e-108
Identities = 267/333 (80%), Positives = 286/333 (85%), Gaps = 29/333 (8%)
Query: 87 LVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVL 146
L+EKSVNTIRFLA+DAVEKANSGHPGLPMGCAPMGH+LYDEVMRYNPKNPYWFNRDRFVL
Sbjct: 6 LLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVL 65
Query: 147 SAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMA 206
SAGHGCMLQYALLHLAGYDSV+E+DLK FRQWGS+TPGHPENFETPG+EVTTGPLGQG+A
Sbjct: 66 SAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIA 125
Query: 207 NAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAF 266
NAVGLALAEKHLAAR+NKPD+EIVDHYTYVILGDGCQMEGIANEA SLAGH GLGKLIAF
Sbjct: 126 NAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAF 185
Query: 267 YDDNHISIDGDTEIAFTENVDKRFEGLGWHVI---------------------------- 298
YDDNHISIDGDTEIAFTE+V RFE LGWH I
Sbjct: 186 YDDNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTL 245
Query: 299 -WVTTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAE 357
VTTTIGFGSPNKANSYSVHGSALGAKEV+ATR+NLGWPY+ F VPEDVK HWSRH E
Sbjct: 246 IKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTPE 305
Query: 358 GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQ 390
GA LEA+WNAKFAEYEKKY ++AA KSI +G+
Sbjct: 306 GAALEADWNAKFAEYEKKYADDAATLKSIITGE 338
|
| >d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} Length = 331 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Escherichia coli [TaxId: 562]
Score = 319 bits (818), Expect = e-104
Identities = 173/326 (53%), Positives = 214/326 (65%), Gaps = 30/326 (9%)
Query: 93 NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 152
N IR L++DAV+KA SGHPG PMG A + +L+ + +++NP+NP W +RDRFVLS GHG
Sbjct: 8 NAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGS 67
Query: 153 MLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLA 212
ML Y+LLHL GYD + ++LKNFRQ SKTPGHPE T G+E TTGPLGQG+ANAVG+A
Sbjct: 68 MLIYSLLHLTGYD-LPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMA 126
Query: 213 LAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHI 272
+AEK LAA++N+P ++IVDHYTY +GDGC MEGI++E SLAG L LGKLIAFYDDN I
Sbjct: 127 IAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI 186
Query: 273 SIDGDTEIAFTENVDKRFEGLGWHVIW----------------------------VTTTI 304
SIDG E FT++ RFE GWHVI T I
Sbjct: 187 SIDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLMCKTII 246
Query: 305 GFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAE 364
GFGSPNKA ++ HG+ LG E+ TR+ LGW Y PF +P ++ W G E+
Sbjct: 247 GFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQW-DAKEAGQAKESA 305
Query: 365 WNAKFAEYEKKYPEEAAEFKSISSGQ 390
WN KFA Y K YP+EAAEF G+
Sbjct: 306 WNEKFAAYAKAYPQEAAEFTRRMKGE 331
|
| >d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Leishmania mexicana mexicana [TaxId: 44270]
Score = 294 bits (752), Expect = 2e-94
Identities = 165/337 (48%), Positives = 212/337 (62%), Gaps = 32/337 (9%)
Query: 86 ALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFV 145
A +EK N IR LA D V+ SGHPG PMG APM +L+ EVM+YN ++P W +RDRFV
Sbjct: 2 ASIEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFV 61
Query: 146 LSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGM 205
+S GHGC LQYALLH+AGY+ + DDLK FRQ GS+TPGHPE F TPG+EVTTGPLGQG+
Sbjct: 62 MSNGHGCALQYALLHMAGYN-LTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGI 120
Query: 206 ANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIA 265
ANAVGLA+AE HLAA +N+P IVDHYTYV GDGC MEG+ EA SLAGHL L KLI
Sbjct: 121 ANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIV 180
Query: 266 FYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV------------------------- 300
YD N+ISIDG T ++FTE +++ +G+HVI V
Sbjct: 181 IYDSNYISIDGSTSLSFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPK 240
Query: 301 ----TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHV 355
TTTIGF +K + VHG+ LG +++ + G P + + V +DV+ + H+
Sbjct: 241 MIVQTTTIGF-GSSKQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHI 299
Query: 356 AEGATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQLP 392
+ + + W A+Y +P E A F + G+LP
Sbjct: 300 DKCSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELP 336
|
| >d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Maize (Zea mays) [TaxId: 4577]
Score = 211 bits (539), Expect = 4e-65
Identities = 173/192 (90%), Positives = 178/192 (92%)
Query: 391 LPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDF 450
LP GW ALP YTPESP +ATRNLSQ CLNALA +PGL+GGSADLASSNMTLLKMFGDF
Sbjct: 1 LPTGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDF 60
Query: 451 QKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAG 510
QKDT EERNVRFGVREHGMGAICNGIALHSPG +PYCATFFVFTDYMR A+RISAL EAG
Sbjct: 61 QKDTAEERNVRFGVREHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRISALSEAG 120
Query: 511 VIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPS 570
VIYVMTHDSIGLGEDGPTHQPIEHL SFRAMPNILMLRPADGNETAGAYKVAV NRKRPS
Sbjct: 121 VIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPS 180
Query: 571 ILALSRQKLPHL 582
ILALSRQKLPHL
Sbjct: 181 ILALSRQKLPHL 192
|
| >d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} Length = 415 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Pyruvate dehydrogenase E1 component, PP module species: Escherichia coli [TaxId: 562]
Score = 200 bits (508), Expect = 6e-58
Identities = 62/387 (16%), Positives = 111/387 (28%), Gaps = 59/387 (15%)
Query: 84 DAALVEKSVNTIRFLAVDAVEKANS------GHPGLPMGCAPMGHILYDEVMRYNPKNPY 137
+ L + + IR+ A+ V +A+ GH A + + ++ R
Sbjct: 19 NLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFR----ARN 74
Query: 138 WFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVT 197
+ V GH YA L G + ++ L NFRQ E
Sbjct: 75 EQDGGDLVYFQGHISPGVYARAFLEGRLT--QEQLDNFRQEVHGNGLSSYPHPKLMPEFW 132
Query: 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGH 257
P +G K L ++ + Y LGDG E + A ++A
Sbjct: 133 QFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATR 192
Query: 258 LGLGKLIAFYDDNHISIDGDTE--IAFTENVDKRFEGLGWHVIWV--------------- 300
L L+ + N +DG ++ FEG GW+VI V
Sbjct: 193 EKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTS 252
Query: 301 --------TTTIGFGSPNKANS--------------YSVHGSALGAKEVDATRKNLGWPY 338
T G K+ + + +++ A + P
Sbjct: 253 GKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPK 312
Query: 339 EPFHVPEDVKKHWSRHVAE--------GATLEAEWNAKFAEYEKKYPEEAAEFKSISSGQ 390
+ + + ++ + G AE + +K + + +
Sbjct: 313 KIYAAFKKAQETKGKATVILAHTIKGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNVP 372
Query: 391 LPAGWEKALPTYTPESPAEATRNLSQT 417
+ + LP T +E L
Sbjct: 373 VSDADIEKLPYITFPEGSEEHTYLHAQ 399
|
| >d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 190 bits (482), Expect = 7e-57
Identities = 106/197 (53%), Positives = 128/197 (64%), Gaps = 5/197 (2%)
Query: 391 LPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDF 450
LPA WE LPTYT + A ATR LS+T L + LP L+GGSADL SN+T K DF
Sbjct: 1 LPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDF 60
Query: 451 Q-----KDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISA 505
Q R +R+G+REH MGAI NGI+ PY TF F Y A+R+SA
Sbjct: 61 QPPSSGSGNYSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSA 120
Query: 506 LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVAN 565
L VI+V THDSIG+GEDGPTHQPIE LA FR++PNI + RPADGNE + AYK ++ +
Sbjct: 121 LSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLES 180
Query: 566 RKRPSILALSRQKLPHL 582
+ PSI+ALSRQ LP L
Sbjct: 181 KHTPSIIALSRQNLPQL 197
|
| >d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Leishmania mexicana mexicana [TaxId: 44270]
Score = 178 bits (453), Expect = 8e-53
Identities = 94/194 (48%), Positives = 124/194 (63%), Gaps = 6/194 (3%)
Query: 393 AGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGD--F 450
+GWE LPT S A ATR S+ CL L +P L+GGSADL SN+T F
Sbjct: 1 SGWEAKLPTN---SSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDF 57
Query: 451 QKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAG 510
+ E R +RFGVREH M AI NG+ H G+IP+ TF F Y A+R++A+
Sbjct: 58 SSSSKEGRYIRFGVREHAMCAILNGLDAHD-GIIPFGGTFLNFIGYALGAVRLAAISHHR 116
Query: 511 VIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPS 570
VIYV THDSIG+GEDGPTHQP+E +A+ RAMPN+ ++RP+D ET+GA+ VA+++ P+
Sbjct: 117 VIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPT 176
Query: 571 ILALSRQKLPHLAG 584
+L LSRQ +G
Sbjct: 177 VLCLSRQNTEPQSG 190
|
| >d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Escherichia coli [TaxId: 562]
Score = 149 bits (376), Expect = 5e-42
Identities = 85/196 (43%), Positives = 114/196 (58%), Gaps = 6/196 (3%)
Query: 391 LPAGWEKALPTYTPESPAE----ATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKM 446
+P+ ++ + + A A+R SQ + A LP LGGSADLA SN+TL
Sbjct: 1 MPSDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSG 60
Query: 447 FGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISAL 506
+D + +GVRE GM AI NGI+LH G +PY +TF +F +Y R A+R++AL
Sbjct: 61 SKAINEDAAG-NYIHYGVREFGMTAIANGISLH-GGFLPYTSTFLMFVEYARNAVRMAAL 118
Query: 507 CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANR 566
+ + V THDSIGLGEDGPTHQP+E +AS R PN+ RP D E+A A+K V +
Sbjct: 119 MKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQ 178
Query: 567 KRPSILALSRQKLPHL 582
P+ L LSRQ L
Sbjct: 179 DGPTALILSRQNLAQQ 194
|
| >d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Transketolase C-terminal domain-like domain: Transketolase (TK), C-domain species: Maize (Zea mays) [TaxId: 4577]
Score = 130 bits (327), Expect = 5e-36
Identities = 108/133 (81%), Positives = 123/133 (92%)
Query: 584 GTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWE 643
GTSI+GVEKG Y ISDNS+GNKPD+I++GTGSELEIAAKAA+ELRK GK VRVVSFVSWE
Sbjct: 2 GTSIEGVEKGGYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWE 61
Query: 644 LFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKE 703
LFDEQSD YKESVLPAAV+AR+SIEAGST GW+K VG++GKAIGID+FGASAPAG IYKE
Sbjct: 62 LFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKE 121
Query: 704 FGITAEAVITAAK 716
+GIT E++I AAK
Sbjct: 122 YGITVESIIAAAK 134
|
| >d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Transketolase C-terminal domain-like domain: Transketolase (TK), C-domain species: Escherichia coli [TaxId: 562]
Score = 118 bits (296), Expect = 8e-32
Identities = 59/133 (44%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
Query: 586 SIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELF 645
+ + +G Y++ D +P++I I TGSE+E+A A E+L G RVVS S + F
Sbjct: 5 QLANIARGGYVLKD--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAF 62
Query: 646 DEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFG 705
D+Q AY+ESVLP AV+ARV++EAG W K VG G +G+ FG SAPA +++EFG
Sbjct: 63 DKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFG 122
Query: 706 ITAEAVITAAKEV 718
T + V+ AKE+
Sbjct: 123 FTVDNVVAKAKEL 135
|
| >d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain {Leishmania mexicana mexicana [TaxId: 44270]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Transketolase C-terminal domain-like domain: Transketolase (TK), C-domain species: Leishmania mexicana mexicana [TaxId: 44270]
Score = 118 bits (296), Expect = 9e-32
Identities = 58/134 (43%), Positives = 82/134 (61%), Gaps = 8/134 (5%)
Query: 585 TSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWEL 644
+SI+GV GAY + D ++++ +GSE+ +A AA+ L + RVVS EL
Sbjct: 1 SSIEGVRHGAYSVVDVP---DLQLVIVASGSEVSLAVDAAKALSGELRV-RVVSMPCQEL 56
Query: 645 FDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEF 704
FD Q D Y+++VLPA V VS+EA +FGWEK +G+ FGASAPAG +YK+F
Sbjct: 57 FDAQPDTYRQAVLPAGVP-VVSVEAYVSFGWEKYSH---AHVGMSGFGASAPAGVLYKKF 112
Query: 705 GITAEAVITAAKEV 718
GIT E V+ +E+
Sbjct: 113 GITVEEVVRTGREL 126
|
| >d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Transketolase C-terminal domain-like domain: Transketolase (TK), C-domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 116 bits (292), Expect = 4e-31
Identities = 52/135 (38%), Positives = 77/135 (57%), Gaps = 7/135 (5%)
Query: 584 GTSIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWE 643
G+SI+ KG Y++ D + PD+IL+ TGSE+ ++ +AA+ L RVVS +
Sbjct: 2 GSSIESASKGGYVLQDVA---NPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFF 58
Query: 644 LFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKE 703
FD+Q Y+ SVLP V +S+E +T W K ++ GIDRFGAS A +++K
Sbjct: 59 TFDKQPLEYRLSVLPDNVP-IMSVEVLATTCWGKYAH---QSFGIDRFGASGKAPEVFKF 114
Query: 704 FGITAEAVITAAKEV 718
FG T E V A++
Sbjct: 115 FGFTPEGVAERAQKT 129
|
| >d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component, C-domain {Escherichia coli [TaxId: 562]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Transketolase C-terminal domain-like domain: Pyruvate dehydrogenase E1 component, C-domain species: Escherichia coli [TaxId: 562]
Score = 93.3 bits (231), Expect = 2e-22
Identities = 31/150 (20%), Positives = 48/150 (32%), Gaps = 20/150 (13%)
Query: 588 DGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAE-ELRKGGKAVRVVSFVSWELFD 646
+G+ KG Y + G+K V L+G+GS L +AAE + G V S S+
Sbjct: 7 EGIRKGIYKLET-IEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELA 65
Query: 647 EQSDAYKES-----------------VLPAAVSARVSIEAGSTFG-WEKIVGSKGKAIGI 688
+ + A A + + +G
Sbjct: 66 RDGQDCERWNMLHPLETPRVPYIAQVMNDAPAVASTDYMKLFAEQVRTYVPADDYRVLGT 125
Query: 689 DRFGASAPAGKIYKEFGITAEAVITAAKEV 718
D FG S + F + A V+ AA
Sbjct: 126 DGFGRSDSRENLRHHFEVDASYVVVAALGE 155
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 719 | |||
| d1itza1 | 338 | Transketolase (TK), PP module {Maize (Zea mays) [T | 100.0 | |
| d1r9ja2 | 336 | Transketolase (TK), PP module {Leishmania mexicana | 100.0 | |
| d2r8oa2 | 331 | Transketolase (TK), PP module {Escherichia coli [T | 100.0 | |
| d1gpua1 | 335 | Transketolase (TK), PP module {Baker's yeast (Sacc | 100.0 | |
| d1itza2 | 192 | Transketolase (TK), Pyr module {Maize (Zea mays) [ | 100.0 | |
| d1gpua2 | 197 | Transketolase (TK), Pyr module {Baker's yeast (Sac | 100.0 | |
| d1r9ja1 | 190 | Transketolase (TK), Pyr module {Leishmania mexican | 100.0 | |
| d2r8oa1 | 195 | Transketolase (TK), Pyr module {Escherichia coli [ | 100.0 | |
| d2ieaa2 | 415 | Pyruvate dehydrogenase E1 component, PP module {Es | 100.0 | |
| d1umdb1 | 186 | Branched-chain alpha-keto acid dehydrogenase, Pyr | 99.97 | |
| d1qs0b1 | 204 | 2-oxoisovalerate dehydrogenase (E1B), Pyr module { | 99.96 | |
| d1ik6a1 | 191 | E1-beta subunit of pyruvate dehydrogenase, Pyr mod | 99.95 | |
| d2bfdb1 | 203 | Branched-chain alpha-keto acid dehydrogenase, Pyr | 99.94 | |
| d2ozlb1 | 192 | E1-beta subunit of pyruvate dehydrogenase, Pyr mod | 99.94 | |
| d1w85b1 | 192 | Pyruvate dehydrogenase E1-beta, PdhB, N-terminal d | 99.92 | |
| d1gpua3 | 146 | Transketolase (TK), C-domain {Baker's yeast (Sacch | 99.89 | |
| d1r9ja3 | 143 | Transketolase (TK), C-domain {Leishmania mexicana | 99.85 | |
| d1itza3 | 136 | Transketolase (TK), C-domain {Maize (Zea mays) [Ta | 99.85 | |
| d2r8oa3 | 136 | Transketolase (TK), C-domain {Escherichia coli [Ta | 99.84 | |
| d1qs0a_ | 407 | 2-oxoisovalerate dehydrogenase (E1B), PP module {P | 99.78 | |
| d1w85a_ | 365 | Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st | 99.76 | |
| d1umdb2 | 137 | Branched-chain alpha-keto acid dehydrogenase {Ther | 99.76 | |
| d2bfda1 | 395 | Branched-chain alpha-keto acid dehydrogenase, PP m | 99.75 | |
| d1umda_ | 362 | Branched-chain alpha-keto acid dehydrogenase, PP m | 99.75 | |
| d2ozlb2 | 138 | E1-beta subunit of pyruvate dehydrogenase, C-domai | 99.75 | |
| d1w85b2 | 132 | Pyruvate dehydrogenase E1-beta, PdhB, C-terminal d | 99.74 | |
| d2bfdb2 | 138 | Branched-chain alpha-keto acid dehydrogenase {Huma | 99.73 | |
| d2ozla1 | 361 | E1-beta subunit of pyruvate dehydrogenase (PP modu | 99.73 | |
| d1ik6a2 | 135 | E1-beta subunit of pyruvate dehydrogenase, C-domai | 99.68 | |
| d1qs0b2 | 134 | 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseu | 99.65 | |
| d2ieaa3 | 186 | Pyruvate dehydrogenase E1 component, C-domain {Esc | 99.51 | |
| d2ieaa1 | 230 | Pyruvate dehydrogenase E1 component, Pyr module {E | 99.28 | |
| d2c42a3 | 157 | Pyruvate-ferredoxin oxidoreductase, PFOR, domain I | 98.53 | |
| d1pvda3 | 196 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 98.44 | |
| d2djia3 | 229 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 98.32 | |
| d1q6za3 | 183 | Benzoylformate decarboxylase {Pseudomonas putida [ | 98.32 | |
| d1ozha3 | 192 | Catabolic acetolactate synthase {Klebsiella pneumo | 98.27 | |
| d2ihta3 | 198 | Carboxyethylarginine synthase {Streptomyces clavul | 98.18 | |
| d1ovma3 | 196 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 98.16 | |
| d1zpda3 | 204 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 98.07 | |
| d2ez9a3 | 228 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 98.05 | |
| d1ybha3 | 208 | Acetohydroxyacid synthase catalytic subunit {Thale | 97.82 | |
| d1t9ba3 | 227 | Acetohydroxyacid synthase catalytic subunit {Baker | 97.77 | |
| d2ji7a3 | 183 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 97.64 | |
| d2c42a1 | 257 | Pyruvate-ferredoxin oxidoreductase, PFOR, domain I | 96.27 | |
| d1q6za2 | 180 | Benzoylformate decarboxylase {Pseudomonas putida [ | 95.62 | |
| d2ji7a3 | 183 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 94.89 | |
| d2djia2 | 184 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 94.59 | |
| d2ihta2 | 186 | Carboxyethylarginine synthase {Streptomyces clavul | 94.45 | |
| d1pvda2 | 180 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 93.16 | |
| d1t9ba2 | 175 | Acetohydroxyacid synthase catalytic subunit {Baker | 92.72 | |
| d1t9ba3 | 227 | Acetohydroxyacid synthase catalytic subunit {Baker | 92.09 | |
| d1ozha2 | 181 | Catabolic acetolactate synthase {Klebsiella pneumo | 91.98 | |
| d1zpda2 | 186 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 91.87 | |
| d2ji7a2 | 188 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 90.06 | |
| d2ez9a2 | 174 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 89.04 | |
| d1q6za3 | 183 | Benzoylformate decarboxylase {Pseudomonas putida [ | 86.19 | |
| d1ybha2 | 195 | Acetohydroxyacid synthase catalytic subunit {Thale | 85.59 | |
| d1ozha3 | 192 | Catabolic acetolactate synthase {Klebsiella pneumo | 85.52 | |
| d1ovma2 | 178 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 85.43 | |
| d1ovma3 | 196 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 83.63 | |
| d2djia3 | 229 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 83.57 | |
| d2ihta3 | 198 | Carboxyethylarginine synthase {Streptomyces clavul | 83.31 | |
| d1zpda3 | 204 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 80.11 |
| >d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Maize (Zea mays) [TaxId: 4577]
Probab=100.00 E-value=4.5e-67 Score=560.32 Aligned_cols=306 Identities=88% Similarity=1.452 Sum_probs=292.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhC
Q 005021 84 DAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAG 163 (719)
Q Consensus 84 ~~~~l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G 163 (719)
..|+|+++++.||.++++||.++++||+|++|||+||+++||..+||+||+||+|++|||||||+||+++++|+++++.|
T Consensus 3 ~~~~~~~~~~~iR~~~~~~v~~a~sGH~G~~ls~adi~~~Ly~~~l~~~~~~p~~~~rDrfilSkGH~~~~~Ya~l~~~G 82 (338)
T d1itza1 3 TGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAG 82 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCeEEEeccccchHHHHHHHHcC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEccccc
Q 005021 164 YDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQ 243 (719)
Q Consensus 164 ~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~ 243 (719)
+++.+.+||.+||+.+|.++|||+...+||++++||+||||++.|+|||+|.|+++.++++++.+..+++|||++||||+
T Consensus 83 ~~~~~~~dL~~fr~~~s~~~Ghp~~~~~pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~vl~GDGel 162 (338)
T d1itza1 83 YDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQ 162 (338)
T ss_dssp CTTCCHHHHTTTTSTTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHH
T ss_pred CccchHHHHHHhhccCCcCCccccCCCCCCccccCCcHHhhHHHHHHHHHHHHHHhccccccccccccceEEEEeCcccc
Confidence 97667788999999999999999987899999999999999999999999999999888888888889999999999999
Q ss_pred ChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE-----------------------
Q 005021 244 MEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV----------------------- 300 (719)
Q Consensus 244 ~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v----------------------- 300 (719)
+||++|||+++|++++|+|||+|+|+|+++++++++....+++.+||++|||+|++|
T Consensus 163 ~EG~~wEA~~~A~~~~L~NLi~i~D~N~~~~dg~~~~~~~~~~~~k~~a~Gw~vi~v~~g~~~~~~i~~a~~~a~~~~~k 242 (338)
T d1itza1 163 MEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAVTDK 242 (338)
T ss_dssp HSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSS
T ss_pred chHHHHHHHhHhhhhhccceeeeehhhccccccccccccCCCHHHHHHhcCCeEEEeeCCchhHHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999998888889999999999999998
Q ss_pred ------eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhh
Q 005021 301 ------TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEK 374 (719)
Q Consensus 301 ------~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~ 374 (719)
+|+||+|.++++++..||+.|+++++++.++++|+||.++|.+|++++.+|+....+|...+.+|+.++.+|++
T Consensus 243 Pt~Iia~TikGkG~~~~e~~~~~Hg~~l~~ee~~~a~~~Lg~~~~~F~ip~~v~~~~~~~~~~g~~~~~~W~~~~~~~~~ 322 (338)
T d1itza1 243 PTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTPEGAALEADWNAKFAEYEK 322 (338)
T ss_dssp CEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeEeecCcccCcCccCCCcchhhccCCHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999987777898999999999999999
Q ss_pred cCchhhhhhhhhhcC
Q 005021 375 KYPEEAAEFKSISSG 389 (719)
Q Consensus 375 ~~p~~~~~~~~~~~g 389 (719)
++|+.+.++.+.++|
T Consensus 323 ~~p~~a~~l~~~l~g 337 (338)
T d1itza1 323 KYADDAATLKSIITG 337 (338)
T ss_dssp HSHHHHHHHHHHHHC
T ss_pred HCHHHHHHHHHHhcC
Confidence 999999988887766
|
| >d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=100.00 E-value=8.6e-66 Score=550.49 Aligned_cols=303 Identities=55% Similarity=0.973 Sum_probs=290.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCC
Q 005021 88 VEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV 167 (719)
Q Consensus 88 l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~ 167 (719)
|+++|+.||+++++|+.++++||+|++|||+||+++||..+|+|||+||+|++|||||+|+||+++++|+++++.|+. +
T Consensus 4 l~~~a~~iR~~~~~~v~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~~~~p~~~~rDrfvlSkGH~~~~lYa~l~~~G~~-~ 82 (336)
T d1r9ja2 4 IEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYN-L 82 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCS-C
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCeEEEeCCccchHHHHHHHHcCCC-C
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999973 5
Q ss_pred ChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhH
Q 005021 168 QEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI 247 (719)
Q Consensus 168 ~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~ 247 (719)
+.+++.+||+.+|.++|||++..+||++++||+||||++.|+|||+|.|+++.+|++++++..+++|||++||||++||+
T Consensus 83 ~~~~l~~~~~~~s~~~ghp~~~~~pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~vy~~~GDGel~EG~ 162 (336)
T d1r9ja2 83 TMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGV 162 (336)
T ss_dssp CHHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred cHHHHhhhccCCCcCcccccccCCCcccccccccccCcchhhHHHHHHHHHhccccccccccccceeEEeccchhhchHH
Confidence 89999999999999999999888999999999999999999999999999999999998888999999999999999999
Q ss_pred HHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE---------------------------
Q 005021 248 ANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV--------------------------- 300 (719)
Q Consensus 248 ~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v--------------------------- 300 (719)
+|||+++|++++|+|||+|+|+|+++|+++++....+++.+||++|||+|++|
T Consensus 163 ~~EA~~~A~~~~L~nLi~i~D~N~~~idg~~~~~~~~d~~~rf~afGW~vi~Vdgg~~d~~~~~~~~~~a~~~~~kP~~I 242 (336)
T d1r9ja2 163 CQEALSLAGHLALEKLIVIYDSNYISIDGSTSLSFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMI 242 (336)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGTCCCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEE
T ss_pred HHHHHHHHHHhhcCCEEEEEecccccccccccccchhHHHHHHHHhccceEEEecCchHHHHHHHHhhhhhhccCCCccc
Confidence 99999999999999999999999999999998888899999999999999999
Q ss_pred --eeeecCCCccccccccccCCCCCHHHHHHHHHHcCC-CCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCc
Q 005021 301 --TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYP 377 (719)
Q Consensus 301 --~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~-~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p 377 (719)
+|++|+|.+ ++++..+|+.|+++++++.+++++|| |.++|.+|++++.+|+....+|...+..|++.+++|+.++|
T Consensus 243 i~kTiiG~G~~-~e~~~~~Hg~pl~~eEi~~~k~~lG~~p~~~F~vp~~v~~~~~~~~~~~~~~~~~W~~~~~~~~~~~p 321 (336)
T d1r9ja2 243 VQTTTIGFGSS-KQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEELLAKYTAAFP 321 (336)
T ss_dssp EEECCTTTTST-TTTSGGGTSSCCCHHHHHHHHHHTTSCSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred eEEEEEeeccc-ccCCcceeecCCCHHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHCH
Confidence 899999987 56789999999999999999999999 79999999999999988778888888999999999999999
Q ss_pred hhhhhhhhhhcCCCC
Q 005021 378 EEAAEFKSISSGQLP 392 (719)
Q Consensus 378 ~~~~~~~~~~~g~~p 392 (719)
+...++.+.++|++|
T Consensus 322 e~~~~l~r~~~geLP 336 (336)
T d1r9ja2 322 AEGAAFVAQMRGELP 336 (336)
T ss_dssp HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCC
Confidence 999999988888876
|
| >d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.9e-65 Score=544.83 Aligned_cols=300 Identities=58% Similarity=1.010 Sum_probs=284.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCCC
Q 005021 88 VEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV 167 (719)
Q Consensus 88 l~~la~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~~ 167 (719)
++++|++||.++++||.++++||+|++|||+||+++||..+|++||+||+|.+|||||||+||+++++|++++++|+. +
T Consensus 3 ~~~~a~~iR~~~~d~v~~a~sGH~G~~ls~~~i~~~Ly~~~l~~~~~~p~~~~rDrfilSkGH~~~~~Ya~l~~~G~~-~ 81 (331)
T d2r8oa2 3 RKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYD-L 81 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCS-C
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHhccCcCCCCCCCCCeEEEeccchHHHHHHHHHHhCCC-C
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999999972 4
Q ss_pred ChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhH
Q 005021 168 QEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGI 247 (719)
Q Consensus 168 ~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~ 247 (719)
+.++|.+||+.+|.++|||+...+||++++||+||||++.|+|||+|.|+++.+|++++.+..+++|||++||||++||+
T Consensus 82 ~~e~l~~f~~~gs~~~ghp~~~~~~gve~stGsLG~Gl~~avG~Ala~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~ 161 (331)
T d2r8oa2 82 PMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGI 161 (331)
T ss_dssp CHHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhcCCCCCCCCCCCCcCcCCCcccCcCchhhhhHHHHHHHHHHHHHhhhhccccccccCceEEEecccccccccc
Confidence 99999999999999999999878999999999999999999999999999999999988888899999999999999999
Q ss_pred HHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE---------------------------
Q 005021 248 ANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV--------------------------- 300 (719)
Q Consensus 248 ~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v--------------------------- 300 (719)
+|||+++|++++|+|||+|+|+|+++++++++....+++.+||++|||+|+++
T Consensus 162 ~wEA~~~A~~~kL~nLi~i~D~N~~~~~g~~~~~~~~~~~~rf~afGw~vi~~~dghd~~~i~~A~~~a~~~~~kP~~Ii 241 (331)
T d2r8oa2 162 SHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLM 241 (331)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHCCSSCEEEE
T ss_pred hhHhhhhcchhcccceeeHHhhhhhccccccccccchhHHHHHHHcCCeeecccccchHHHHHHHHHHHHhhcCCCccce
Confidence 99999999999999999999999999999998777889999999999999865
Q ss_pred -eeeecCCCccccccccccCCCCCHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHhhcchhHHHHHHHHHhhhhhcCchh
Q 005021 301 -TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGWPYEPFHVPEDVKKHWSRHVAEGATLEAEWNAKFAEYEKKYPEE 379 (719)
Q Consensus 301 -~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 379 (719)
+|+||+|.++++++..||+.++++++++.++++|+|+.+||.+|++++.+|+ ...+|...+..|..++.+|++.+|+.
T Consensus 242 ~~TikGkG~~~~e~~~~~Hg~~l~~~e~~~ak~~Lg~~~~~F~ip~~V~~~~~-~~~rg~~~~~~W~~~~~~~~~~~pe~ 320 (331)
T d2r8oa2 242 CKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWD-AKEAGQAKESAWNEKFAAYAKAYPQE 320 (331)
T ss_dssp EECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred eeeeeecCCcccCCCchhhcCCCCHHHHHHHHHHcCCCCCCCcCCHHHHHHHH-HHhhcHHHHHHHHHHHHHHHHHCHHH
Confidence 8999999999999999999999999999999999999999999999999995 34667777888999999999999999
Q ss_pred hhhhhhhhcC
Q 005021 380 AAEFKSISSG 389 (719)
Q Consensus 380 ~~~~~~~~~g 389 (719)
+.++.+.++|
T Consensus 321 ~~el~r~~~g 330 (331)
T d2r8oa2 321 AAEFTRRMKG 330 (331)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcC
Confidence 9999887765
|
| >d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.5e-65 Score=542.06 Aligned_cols=298 Identities=58% Similarity=1.011 Sum_probs=278.8
Q ss_pred HHHHH-HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHHHHHHHHhCCCC
Q 005021 88 VEKSV-NTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDS 166 (719)
Q Consensus 88 l~~la-~~iR~~~~~~v~~~~~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~Ya~l~l~G~~~ 166 (719)
|++++ +.||.++++||.++++||+|++|||+||+++||.. |++||++|+|++|||||+|+||++|++|+++++.|+.
T Consensus 5 ~~~~~~~~iR~~~~~~v~~a~sGH~G~~ls~~~i~~~Ly~~-~~~~p~~p~~~~rDrfilSkGH~~~~lYa~l~~~G~~- 82 (335)
T d1gpua1 5 IDKLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYD- 82 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHT-CCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHTTCS-
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHH-hccCcCCCCCCCCCeEEEeCcchhHHHHHHHHHhCCC-
Confidence 55555 88999999999999999999999999999999976 9999999999999999999999999999999999972
Q ss_pred CChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChh
Q 005021 167 VQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEG 246 (719)
Q Consensus 167 ~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG 246 (719)
++.++|.+||+.+|.++|||+. .+||++++||+||||++.|+|||+|.|+++.+|++++.+..+++|||++||||++||
T Consensus 83 ~~~e~L~~fr~~gs~~~ghp~~-~~pgie~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG 161 (335)
T d1gpua1 83 LSIEDLKQFRQLGSRTPGHPEF-ELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEG 161 (335)
T ss_dssp CCHHHHTTTTCTTCSCCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSH
T ss_pred CCHHHHHhcccCCCCCCCCCCC-CCCCeEeCCCChhHHHHHHHHHHHHhHhhhcccccCCcCCCCCcEEEEecchhhchh
Confidence 4999999999999999999997 689999999999999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhcchhHHHHHhccCceEEEE--------------------------
Q 005021 247 IANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAFTENVDKRFEGLGWHVIWV-------------------------- 300 (719)
Q Consensus 247 ~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~~~~~~~~~~a~G~~~~~v-------------------------- 300 (719)
++|||+++|++++|+|||+|+|+|+++++++++....+++.++|++|||+|++|
T Consensus 162 ~~~EA~~~A~~~~L~NLi~i~D~N~~~~dg~~~~~~~~~~~~~f~a~GW~vi~vdg~~~d~~~~~~~~~~~~~~~~KPt~ 241 (335)
T d1gpua1 162 ISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTL 241 (335)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHCTTSCEE
T ss_pred hhhhhHhHhhhhccCCEEEEEecccccccccccccccCCHHHHHHhCCCcEEEEcCCchhHHHHHHHHhhhhcccCCCcc
Confidence 999999999999999999999999999999998877889999999999999998
Q ss_pred ---eeeecCCCccccccccccCCCCCHHHHHHHHHHcCC-CCCCCCCcHHHHHHHHHH-hhcchhHHHHHHHHHhhhhhc
Q 005021 301 ---TTTIGFGSPNKANSYSVHGSALGAKEVDATRKNLGW-PYEPFHVPEDVKKHWSRH-VAEGATLEAEWNAKFAEYEKK 375 (719)
Q Consensus 301 ---~t~~g~g~~~~~~~~~~h~~~l~~~~~~~~~~~l~~-~~~~~~~~~~v~~~~~~~-~~~g~~~~~~~~~~~~~~~~~ 375 (719)
+|+||+|.+ .+++..+|+.|+++++++.++++|+| |.+||.+|++|+++|++. ..+|......|++++.+|+++
T Consensus 242 Iia~TikGkGs~-~e~~~~~Hg~~l~~eei~~~k~~Lg~~~~~pF~ip~eV~~~~~~~~~~~g~~~~~~W~~~~~~y~~~ 320 (335)
T d1gpua1 242 IKMTTTIGYGSL-HAGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQKK 320 (335)
T ss_dssp EEEECCTTTTST-TTTSGGGSSSCCCHHHHHHHHHHTTCCTTCCSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeeccCCcCc-ccCchhHHhhcCCHHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 899999976 46789999999999999999999999 578999999999999764 356777888999999999999
Q ss_pred CchhhhhhhhhhcC
Q 005021 376 YPEEAAEFKSISSG 389 (719)
Q Consensus 376 ~p~~~~~~~~~~~g 389 (719)
+|+.+.++.+.++|
T Consensus 321 ~Pe~~~el~~~~~g 334 (335)
T d1gpua1 321 FPELGAELARRLSG 334 (335)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhcC
Confidence 99999998887765
|
| >d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Maize (Zea mays) [TaxId: 4577]
Probab=100.00 E-value=4.6e-46 Score=365.71 Aligned_cols=192 Identities=90% Similarity=1.412 Sum_probs=177.4
Q ss_pred CCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccccccchHH
Q 005021 391 LPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMG 470 (719)
Q Consensus 391 ~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~v 470 (719)
+|++|...+|+|..+.+..++|++++++|.++++++|+++++++|+.+|+++.+++..+|.+++||+||||+|||||+|+
T Consensus 1 lP~~w~~~lp~~~~~~~~~AtR~a~g~~L~~la~~~~~iv~~sADL~~St~t~~~~~~~~~~~~~p~r~i~~GIaEq~m~ 80 (192)
T d1itza2 1 LPTGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGVREHGMG 80 (192)
T ss_dssp CCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCTTCCBCCCCSCHHHHH
T ss_pred CCcchhhhCcccCCCCCCchHHHHHHHHHHHHHhhCchhheeccccCCCcCcccccccccccccchhccceeceecchHH
Confidence 47889888899887777789999999999999999999999999999888776666555556689999999999999999
Q ss_pred HHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeC
Q 005021 471 AICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPA 550 (719)
Q Consensus 471 g~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~ 550 (719)
++|+|||++|.|++||+.+|+.|++|+++|+++.+++++||+++++|+|+++|+||+|||++||+++||+||||+|++|+
T Consensus 81 ~iAaGlA~~~~G~~p~~~tf~~F~~~~~~~~~~~~~~~~~v~~v~~~~g~~~g~dG~TH~~ieDia~~r~iPn~~v~~P~ 160 (192)
T d1itza2 81 AICNGIALHSPGFVPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPA 160 (192)
T ss_dssp HHHHHHHTTCTTCEEEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEECCC
T ss_pred HHHHHHHHhcCCCEEEEEEEhhhhhhccchhhhhccccccceEEEecCCcccccCCcccHHHHHHHHHhCcCCceEEecC
Confidence 99999999754489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCC
Q 005021 551 DGNETAGAYKVAVANRKRPSILALSRQKLPHL 582 (719)
Q Consensus 551 d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~ 582 (719)
|+.|++.++++++.+.++|+|||++|+++|.+
T Consensus 161 d~~e~~~~~~~a~~~~~gP~yiRl~R~~~P~l 192 (192)
T d1itza2 161 DGNETAGAYKVAVLNRKRPSILALSRQKLPHL 192 (192)
T ss_dssp SHHHHHHHHHHHHHCTTSCEEEEECSSCBCCC
T ss_pred CHHHHHHHHHHHHHcCCCCEEEEEcCCCCCCC
Confidence 99999999999997778999999999998853
|
| >d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.4e-45 Score=361.23 Aligned_cols=192 Identities=55% Similarity=0.881 Sum_probs=175.5
Q ss_pred CCCcccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCc-----ccCCCCCccccccc
Q 005021 391 LPAGWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQ-----KDTPEERNVRFGVR 465 (719)
Q Consensus 391 ~p~~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~-----~~~~p~R~~d~GIa 465 (719)
+|++|++.+|+|..+.+..+||++++++|.++++.+|++++++||+.+|+++.+++..+|+ +++||+||||+|||
T Consensus 1 lP~~w~~~lp~~~~~~~~~aTR~a~g~~L~~la~~~p~lv~~sADL~~St~t~~~~~~~f~~~~~~~~~~p~R~i~~GIa 80 (197)
T d1gpua2 1 LPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIR 80 (197)
T ss_dssp CCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEETTCCEEECCSC
T ss_pred CCcchhhhCcccCCCCCCcchHHHHHHHHHHHHhhChhhcccccccCCccccccccccccccccccccCCCCceeecccc
Confidence 4888988899998766678999999999999999999999999999888877655443332 23799999999999
Q ss_pred cchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeE
Q 005021 466 EHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNIL 545 (719)
Q Consensus 466 E~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~ 545 (719)
||+|+++|+|||++|+.++||+.+|+.|++|+++|+|+.|++++||+++++|+|+++|+||+|||++||+++||+||||+
T Consensus 81 Eq~m~~iaaGlA~~G~~~~p~~~t~~~f~~~~~~~~~~~~~~~~~v~~v~t~~g~~~g~dG~THq~ieDia~~r~iPn~~ 160 (197)
T d1gpua2 81 EHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQ 160 (197)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSSCE
T ss_pred hhhHHHHHHHHHHcCCceeEEEEeehhhhhhhHHHHHHhhhcCCceEEEEecccccccccccchhhHHHHHHHhcCCCcE
Confidence 99999999999999954689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCHHHHHHHHHHHHHcCCCcEEEEEcCCCCCCC
Q 005021 546 MLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHL 582 (719)
Q Consensus 546 V~~P~d~~e~~~~l~~a~~~~~~P~~irl~r~~~~~~ 582 (719)
|++|+|+.|++.++++|+++.++|+|||++|+++|++
T Consensus 161 v~~PaD~~e~~~a~~~a~~~~~gP~yiRl~R~~~P~l 197 (197)
T d1gpua2 161 VWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQL 197 (197)
T ss_dssp EECCCSHHHHHHHHHHHHHCSSCCEEEECCSSCBCCC
T ss_pred EEecCCHHHHHHHHHHHHHcCCCCEEEEecCCCCCCC
Confidence 9999999999999999998778999999999998863
|
| >d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=100.00 E-value=2.1e-43 Score=345.41 Aligned_cols=184 Identities=50% Similarity=0.841 Sum_probs=166.4
Q ss_pred cccccCCCCCCCCCcchHHHHHHHHHHHHHhhCCceEEEecCCCCCcccc--ccccccCcccCCCCCccccccccchHHH
Q 005021 394 GWEKALPTYTPESPAEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTL--LKMFGDFQKDTPEERNVRFGVREHGMGA 471 (719)
Q Consensus 394 ~~~~~~~~~~~~~~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~--~~g~~~f~~~~~p~R~~d~GIaE~~~vg 471 (719)
.|...+|++. +..+||++++++|.++++++|++++++||+.+|+.+. .+++.+|.++.||+||||+|||||+|++
T Consensus 2 ~w~~~lp~~~---~~iaTR~a~g~~L~~l~~~~p~iv~~sADL~~St~t~~~~~~~~~f~~~~~~~r~i~~GIaEqnm~~ 78 (190)
T d1r9ja1 2 GWEAKLPTNS---SAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCA 78 (190)
T ss_dssp TTGGGSCCCC---SCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBTTCCEEECCSCHHHHHH
T ss_pred ChhhhCCCCC---CCccHHHHHHHHHHHHHhhCcceEeeccccCccccccccccccccccccCCCCCeeeeccchhhHHH
Confidence 3555666542 4579999999999999999999999999998887653 3566778775667799999999999999
Q ss_pred HHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCC
Q 005021 472 ICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPAD 551 (719)
Q Consensus 472 ~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d 551 (719)
+|+|||++|. ++||+++|+.|++|+++|||+.+++++||++|++|+|+++|+||+|||++||+++||+|||++|++|+|
T Consensus 79 iAaGla~~~g-~~p~~~t~~~F~~r~~~~ir~~~~~~~~v~~v~~~~g~~~g~dG~THq~ieDla~~R~iPn~~V~~PaD 157 (190)
T d1r9ja1 79 ILNGLDAHDG-IIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSD 157 (190)
T ss_dssp HHHHHHHHSS-CEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEEECCSS
T ss_pred HHHHHHHcCC-cceEEecchhhhccchHHHHHhcccCCceEEEEecCccccCCCCcchhHHHHHHHHHhcCCEEEEecCC
Confidence 9999998764 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEcCCCCCC
Q 005021 552 GNETAGAYKVAVANRKRPSILALSRQKLPH 581 (719)
Q Consensus 552 ~~e~~~~l~~a~~~~~~P~~irl~r~~~~~ 581 (719)
+.|++.++++|+.+.++|+|||++|+++|.
T Consensus 158 ~~E~~~al~~a~~~~~gP~yiRl~R~n~~~ 187 (190)
T d1r9ja1 158 QTETSGAWAVALSSIHTPTVLCLSRQNTEP 187 (190)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEECCSSEECC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEecCCCCCC
Confidence 999999999999878999999999998874
|
| >d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.5e-44 Score=350.46 Aligned_cols=173 Identities=47% Similarity=0.752 Sum_probs=162.7
Q ss_pred cchHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEE
Q 005021 408 AEATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYC 487 (719)
Q Consensus 408 ~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~ 487 (719)
+.+||++++++|.++++..|++++++||+.+|+.+.+++.+.|++ +||+|||++|||||+|+++|+|||++|. ++||+
T Consensus 22 ~~ATR~asg~~L~~la~~~p~liggsADL~~St~t~~~~~~~f~~-~~p~r~i~~GIaEq~M~~iAaGlA~~g~-~~p~~ 99 (195)
T d2r8oa1 22 KIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINE-DAAGNYIHYGVREFGMTAIANGISLHGG-FLPYT 99 (195)
T ss_dssp CEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTT-CTTCSEEECCSCHHHHHHHHHHHHHHSS-CEEEE
T ss_pred CcchHHHHHHHHHHHHhhcccceeccccccccccccccccccccc-CCCCCeeeeeeehhhHHHHHHHHHhhCC-ceEEe
Confidence 478999999999999999999999999999888877677777865 8999999999999999999999998874 89999
Q ss_pred EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCC
Q 005021 488 ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRK 567 (719)
Q Consensus 488 ~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~ 567 (719)
.+|+.|++|+++|||+.++++.+++++++|+|+++|+||+|||++||+++||+||||+|++|+|+.|++.++++|+.+.+
T Consensus 100 stf~~f~~~~~~~ir~~~~~~~~~v~v~~h~g~~~g~dG~THq~iEDia~lR~iPn~~v~~P~D~~E~~~a~~~a~~~~~ 179 (195)
T d2r8oa1 100 STFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQD 179 (195)
T ss_dssp EEEGGGGGTTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCSS
T ss_pred ecceeeeccccchhhccccccccceeeeccccccccccchhhHHHHHHHHHHhhCCcEEEecCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999989889889999999999999999999999999999999999999999999999999998778
Q ss_pred CcEEEEEcCCCCCCC
Q 005021 568 RPSILALSRQKLPHL 582 (719)
Q Consensus 568 ~P~~irl~r~~~~~~ 582 (719)
+|+|||++|+++|.+
T Consensus 180 gP~ylRl~R~~~P~~ 194 (195)
T d2r8oa1 180 GPTALILSRQNLAQQ 194 (195)
T ss_dssp SCEEEECCSSEECCC
T ss_pred CCEEEEecCCCCCCC
Confidence 999999999998864
|
| >d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Pyruvate dehydrogenase E1 component, PP module species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-41 Score=372.01 Aligned_cols=210 Identities=24% Similarity=0.248 Sum_probs=182.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcC------CCCCCCCCCHHHHHHHHHhhhhhcCCCCCCCCCCCcEEEeCCCCchHH
Q 005021 82 STDAALVEKSVNTIRFLAVDAVEKAN------SGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQ 155 (719)
Q Consensus 82 ~~~~~~l~~la~~iR~~~~~~v~~~~------~GH~g~~ls~~el~~aL~~~~l~~d~~~p~~~~rDr~Ils~GH~~~~~ 155 (719)
+.+-|+-+++++.||+++++||.+++ |||+|++||||||+.+||.++|| +|.|.+|||||+|+||++|++
T Consensus 17 p~~~~~e~~~~~~iR~~~~~~v~~a~~~~~~~GGH~g~~ls~~~l~~vl~~~~~~----~p~~~~~d~~ilskGHas~~l 92 (415)
T d2ieaa2 17 PGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFR----ARNEQDGGDLVYFQGHISPGV 92 (415)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCCHHHHHHHHHHHHHHHHTCC----CCCSSSCCCEEECCGGGHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHHHHHHHHHHHhhcC----CCCcCCCCCEEEecCcchHHH
Confidence 44556667899999999999999876 49999999999999999988764 578999999999999999999
Q ss_pred HHHHHHhCCCCCChhHHhhhhhcCCCCCCCCCCCC---CCCccccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCc
Q 005021 156 YALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFE---TPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDH 232 (719)
Q Consensus 156 Ya~l~l~G~~~~~~~~l~~~r~~~~~~~g~p~~~~---~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~ 232 (719)
|+++++.|++ +.++|.+|||.++.+++++.+.. .++..+++|++|+|.+.++|+|.+.++...+.. .+..++
T Consensus 93 Ya~l~~~g~~--~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~a~~~~---~~~~~~ 167 (415)
T d2ieaa2 93 YARAFLEGRL--TQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGL---KDTSKQ 167 (415)
T ss_dssp HHHHHHTTSS--CHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTS---CCCTTC
T ss_pred HHHHHHcCCC--chhhHHHHhhhccCCCCCCCCCCCCCCCCCcCCCchhhhHHHHHHHHHHHHHHHhhhcc---ccCCCc
Confidence 9999999996 99999999998877766655432 357788999999999999999988876653322 223578
Q ss_pred EEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchh--hhcchhHHHHHhccCceEEEE
Q 005021 233 YTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTE--IAFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 233 ~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~--~~~~~~~~~~~~a~G~~~~~v 300 (719)
+|||++||||++||++|||+++|++++|+|||+|+|+|++||++++. ....+++.++|++|||+|++|
T Consensus 168 ~~~~~~gDg~~~eg~~~ea~~~a~~~~l~nl~~i~d~N~~~~~~~~~~~~~~~~~~~~~~~~~gw~v~~~ 237 (415)
T d2ieaa2 168 TVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKV 237 (415)
T ss_dssp CEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEEecccccchHHHHHHHHHHHHhCCCeEEEEEeCCceeeccChhccccchHHHHHHHHhcCceeEEe
Confidence 99999999999999999999999999999999999999999999985 345789999999999999876
|
| >d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=3.8e-31 Score=259.32 Aligned_cols=164 Identities=17% Similarity=0.157 Sum_probs=138.0
Q ss_pred chHHHHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCccccccccchHHHHHHHHHhcCCCCccEEE
Q 005021 409 EATRNLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCA 488 (719)
Q Consensus 409 ~s~r~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~ 488 (719)
+++++|++++|.+++++|++++++++|++.++.....-.+.|++ .||+|++|+||+||+|+|+|+|||+.| ++||++
T Consensus 3 ~t~~~Ai~~al~e~m~~d~~v~~~g~Dv~~~gg~~~~~~~~~~~-~~p~R~~~~pIaE~~~ig~a~G~A~~G--~~Piv~ 79 (186)
T d1umdb1 3 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQK-YGPDRVMDTPLSEAAIVGAALGMAAHG--LRPVAE 79 (186)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHH-HCTTTEEECCSCHHHHHHHHHHHHHHT--CEEEEE
T ss_pred ehHHHHHHHHHHHHHHhCcCEEEEecCcCCCCCcccccHHHHHh-cCcceeeecccchhhhhhhHHHHHhcc--CceeEE
Confidence 57899999999999999999999999996443211111133544 789999999999999999999999999 699997
Q ss_pred e-hhhhHHhHHHHHHHH-hhh--------cCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHH
Q 005021 489 T-FFVFTDYMRAAIRIS-ALC--------EAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGA 558 (719)
Q Consensus 489 ~-y~~F~~ra~dqir~~-a~~--------~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~ 558 (719)
+ |..|+.|++|||++. |++ +.|+++++ ..|.+.+|.+||+.+|+++++++||++|++|+|+.|++++
T Consensus 80 ~~~~~f~~~~~dqi~n~~~~~~~~~~g~~~~~~~~~~---~~G~~~~g~~hhs~~~~~~~~~iPgl~V~~Ps~~~d~~~~ 156 (186)
T d1umdb1 80 IQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRM---PSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGL 156 (186)
T ss_dssp CSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEE---EECSSSSCGGGSSCCCHHHHHTSTTCEEEECCSHHHHHHH
T ss_pred EeecchhhhhHHHHHHhHHHhccccCceeeeeeeeec---cccccCCCccccccCHHHHhhhccceeeeecCCHHHHHHH
Confidence 5 677778999999974 643 46777775 3445678999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEEcCCCC
Q 005021 559 YKVAVANRKRPSILALSRQKL 579 (719)
Q Consensus 559 l~~a~~~~~~P~~irl~r~~~ 579 (719)
+++|++ .++|+||+++|...
T Consensus 157 l~~a~~-~~~Pv~i~e~k~ly 176 (186)
T d1umdb1 157 LKAAIR-DEDPVVFLEPKRLY 176 (186)
T ss_dssp HHHHHH-CSSCEEEEEEGGGS
T ss_pred HHHHHh-CCCcEEEEechHHh
Confidence 999997 69999999998643
|
| >d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module species: Pseudomonas putida [TaxId: 303]
Probab=99.96 E-value=1.7e-30 Score=256.56 Aligned_cols=162 Identities=14% Similarity=0.122 Sum_probs=137.8
Q ss_pred cchHHHHHHHHHHHHHhhCCceEEEecCCCC--CccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCc
Q 005021 408 AEATRNLSQTCLNALAKTLPGLLGGSADLAS--SNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLI 484 (719)
Q Consensus 408 ~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~--s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~ 484 (719)
.++++++++++|.+++++||+++++++|++. +.+..+++ |.+ +| |+|++|+||+|++|+|+|+|||+.| ++
T Consensus 4 ~m~~~~ai~~al~e~m~~d~~v~~~Gedv~~~Gg~f~~t~g---l~~-kfgp~Rv~dtpIaE~~~vG~A~GlA~~G--~r 77 (204)
T d1qs0b1 4 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEG---LQT-KYGKSRVFDAPISESGIVGTAVGMGAYG--LR 77 (204)
T ss_dssp ECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTT---HHH-HHCTTTEEECCSCHHHHHHHHHHHHHHT--CE
T ss_pred eehHHHHHHHHHHHHHhhCCCEEEEecCCCccCCccccchH---HHH-HHhhhheecccccceeehhHHHHHhcCC--Cc
Confidence 4689999999999999999999999999863 33333333 545 77 9999999999999999999999999 69
Q ss_pred cEEEe-hhhhHHhHHHHHHHH-h--------hhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHH
Q 005021 485 PYCAT-FFVFTDYMRAAIRIS-A--------LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNE 554 (719)
Q Consensus 485 Pv~~~-y~~F~~ra~dqir~~-a--------~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e 554 (719)
||+++ |..|+.+++|||++. | ..++|+++++ .+ |.|.+|.+||+.+++++|+++||++|++|+|+.|
T Consensus 78 Pvve~~~~df~~~a~dqi~n~~ak~~~~~~~~~~~p~vir~--~~-g~~~~~g~~Hs~~~~s~~~~iPgl~Vv~Ps~~~d 154 (204)
T d1qs0b1 78 PVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRM--PC-GGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYD 154 (204)
T ss_dssp EEEECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEE--EE-CCSSSCCSSSSCCCHHHHTTSTTCEEECCCSHHH
T ss_pred EEEEEEecchhhHHHHHHHHHHHHhhcccccCcccceEEEc--Cc-ccccCcccccccCHHHHHhcCCCcEEEeeCCHHH
Confidence 99975 999999999999874 4 1356777776 22 3355667799999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEcCCCC
Q 005021 555 TAGAYKVAVANRKRPSILALSRQKL 579 (719)
Q Consensus 555 ~~~~l~~a~~~~~~P~~irl~r~~~ 579 (719)
++++++.|++ .++|++|+++|...
T Consensus 155 a~~ll~~a~~-~~~Pvi~~e~k~ly 178 (204)
T d1qs0b1 155 AKGLLIASIE-CDDPVIFLEPKRLY 178 (204)
T ss_dssp HHHHHHHHHH-SSSCEEEEEEGGGS
T ss_pred HHHHHHHHHh-CCCcEEEEeeHHHh
Confidence 9999999997 69999999998644
|
| >d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.95 E-value=1.3e-28 Score=241.16 Aligned_cols=161 Identities=15% Similarity=0.154 Sum_probs=120.8
Q ss_pred chHHHHHHHHHHHHHhhCCceEEEecCCCC--CccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCcc
Q 005021 409 EATRNLSQTCLNALAKTLPGLLGGSADLAS--SNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLIP 485 (719)
Q Consensus 409 ~s~r~a~~~~L~~l~~~dp~iv~~saDl~~--s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~P 485 (719)
.++++|++++|.+++++||+++++++|++. +.+..++| |.+ +| |+|++|+||+|++++|+|+|||+.| ++|
T Consensus 8 ~~~~~Ai~~Al~e~m~~d~~v~~~GeDv~~~Gg~f~~t~g---L~~-kfg~~Rv~dtpIsE~~~~G~a~GlA~~G--~rP 81 (191)
T d1ik6a1 8 ANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEG---LYE-RFGPERVIDTPLNEGGILGFAMGMAMAG--LKP 81 (191)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEEC---------CTTTT---HHH-HHCTTTEEECCSCHHHHHHHHHHHHHTT--CEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCeeecchh---HHH-HhhhheeeccccchhHHHHHHHHHHHhc--Cce
Confidence 568899999999999999999999999963 33333444 444 56 8999999999999999999999999 699
Q ss_pred EEE-ehhhhHHhHHHHHHHH-hh--------hcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHHH
Q 005021 486 YCA-TFFVFTDYMRAAIRIS-AL--------CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNET 555 (719)
Q Consensus 486 v~~-~y~~F~~ra~dqir~~-a~--------~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e~ 555 (719)
|++ .|.+|+.+++|||++. |. .++|++++... | .+.+|++||+.++.++|+++||++|++|+|+.|+
T Consensus 82 ive~~~~df~~~a~dQi~n~~ak~~~~s~g~~~~p~vir~~~-G--~~~~gg~~Hs~~~~a~~~~iPgl~Vv~Ps~p~da 158 (191)
T d1ik6a1 82 VAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPV-G--SGTRGGLYHSNSPEAIFVHTPGLVVVMPSTPYNA 158 (191)
T ss_dssp EEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEE-C--C-----------HHHHHHTCTTCEEECCCSHHHH
T ss_pred EEEEEecchhHHHHHHHHHHHHHHHHhcCCccccccceeecc-c--CCCCCcccccCCHHHHHHHhhcccEEecCCHHHH
Confidence 997 5889999999999874 43 36888888733 3 3446889999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCC
Q 005021 556 AGAYKVAVANRKRPSILALSRQKL 579 (719)
Q Consensus 556 ~~~l~~a~~~~~~P~~irl~r~~~ 579 (719)
+.+|+.|++ .++|++++++|.-.
T Consensus 159 ~~ll~~al~-~~~Pv~~~e~k~ly 181 (191)
T d1ik6a1 159 KGLLKAAIR-GDDPVVFLEPKILY 181 (191)
T ss_dssp HHHHHHHHH-SSSCEEEEEEGGGS
T ss_pred HHHHHHHHh-CCCcEEEEEcHHHh
Confidence 999999997 68999999998643
|
| >d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=6.8e-28 Score=237.16 Aligned_cols=164 Identities=15% Similarity=0.101 Sum_probs=137.8
Q ss_pred CcchHHHHHHHHHHHHHhhCCceEEEecCCCC-CccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCc
Q 005021 407 PAEATRNLSQTCLNALAKTLPGLLGGSADLAS-SNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLI 484 (719)
Q Consensus 407 ~~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~-s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~ 484 (719)
.+++++++++++|.+.+++||+++++++|++. +.+..++| |.+ +| |+|++|+||+|++++|+|+|||+.| ++
T Consensus 18 ~~~~~~~Ai~~al~~~m~~d~~v~~~GedV~~GGvf~~t~g---L~~-kfG~~Rv~dtPIsE~~~~G~a~G~A~~G--~r 91 (203)
T d2bfdb1 18 QKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVG---LRD-KYGKDRVFNTPLCEQGIVGFGIGIAVTG--AT 91 (203)
T ss_dssp EEECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTT---HHH-HHCTTTEEECCSCHHHHHHHHHHHHHTT--CC
T ss_pred eeeeHHHHHHHHHHHHHhhCCCEEEEecCcCCCCccccchh---hhh-hhhhhheeccccccceecchhhhhhhcc--cc
Confidence 45789999999999999999999999999963 33433444 444 78 9999999999999999999999999 69
Q ss_pred cEEEe-hhhhHHhHHHHHHHH-hh--------hcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHH
Q 005021 485 PYCAT-FFVFTDYMRAAIRIS-AL--------CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNE 554 (719)
Q Consensus 485 Pv~~~-y~~F~~ra~dqir~~-a~--------~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e 554 (719)
||+.+ |.+|+.+++|||.+. +. .++|++++. .+.+.+..|++||+.++.++|+++||++|++|+|+.|
T Consensus 92 Pive~~f~dF~~~a~dqi~n~~ak~~~~~~g~~~~~~vv~~--~~~g~~~~g~~~HSq~~~~~~~~~PGl~Vv~Ps~p~D 169 (203)
T d2bfdb1 92 AIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIR--SPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQ 169 (203)
T ss_dssp EEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEE--EEESCCSSCGGGSSCCCHHHHHTSTTCEEECCSSHHH
T ss_pred eEEEEEehhhhhhhHHHHHHHHhhhhcccCCccccccceee--eccccCccccccccccHHHHHcCCCCcEEEecCCHHH
Confidence 99974 999999999999874 42 135445444 2334455788899999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEcCCCC
Q 005021 555 TAGAYKVAVANRKRPSILALSRQKL 579 (719)
Q Consensus 555 ~~~~l~~a~~~~~~P~~irl~r~~~ 579 (719)
++++|+.|++ .++|++++++|...
T Consensus 170 a~gll~~ai~-~~~Pvi~~E~k~Ly 193 (203)
T d2bfdb1 170 AKGLLLSCIE-DKNPCIFFEPKILY 193 (203)
T ss_dssp HHHHHHHHHH-SSSCEEEEEEGGGT
T ss_pred HHHHHHHHHh-CCCcEEEEeeHHHh
Confidence 9999999997 69999999998643
|
| >d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.1e-27 Score=234.39 Aligned_cols=161 Identities=15% Similarity=0.201 Sum_probs=134.8
Q ss_pred cchHHHHHHHHHHHHHhhCCceEEEecCCCC--CccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCc
Q 005021 408 AEATRNLSQTCLNALAKTLPGLLGGSADLAS--SNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLI 484 (719)
Q Consensus 408 ~~s~r~a~~~~L~~l~~~dp~iv~~saDl~~--s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~ 484 (719)
+.++|+|++++|.+++++||+++++++|++. +.+..+++ +.+ +| |+|++|+||+|++++|+|+|+|+.| ++
T Consensus 3 ~it~~eAi~~al~~~m~~d~~v~i~Gedv~~~gg~f~~t~g---l~~-~fg~~Rv~dtPisE~~~~G~a~G~A~~G--~r 76 (192)
T d2ozlb1 3 QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRG---LWK-KYGDKRIIDTPISEMGFAGIAVGAAMAG--LR 76 (192)
T ss_dssp EEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTT---HHH-HHCTTTEEECCSCHHHHHHHHHHHHHTT--CE
T ss_pred eeeHHHHHHHHHHHHHhhCCCEEEEecCCCccCCccccccc---hhh-hcccceEEecccchhHHHHHHHHHHhcC--Cc
Confidence 5789999999999999999999999999963 33333333 444 55 8999999999999999999999999 69
Q ss_pred cEEEe-hhhhHHhHHHHHHHH-h--------hhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHH
Q 005021 485 PYCAT-FFVFTDYMRAAIRIS-A--------LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNE 554 (719)
Q Consensus 485 Pv~~~-y~~F~~ra~dqir~~-a--------~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e 554 (719)
||+++ |.+|+.+++|||++. | .+++||++++... .|..|..||+.+++++|+++||++|++|+++.|
T Consensus 77 Pive~~~~df~~~a~dqi~n~~ak~~~~~~g~~~~pvvir~~~g---~~~g~g~~Hs~~~~~~~~~~PGl~Vv~Ps~p~d 153 (192)
T d2ozlb1 77 PICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNG---ASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSED 153 (192)
T ss_dssp EEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECS---CCSSCCGGGCCCCHHHHHTSTTCEEECCCSHHH
T ss_pred eEEEEEeccchhhhHHHHHhhhhhhhhhhCCcccceEEEEeccC---CCCCcccccccchHHhhccCCceEEEecCCHHH
Confidence 99974 899999999999874 3 2578888887322 223345567777789999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEcCCC
Q 005021 555 TAGAYKVAVANRKRPSILALSRQK 578 (719)
Q Consensus 555 ~~~~l~~a~~~~~~P~~irl~r~~ 578 (719)
++++|++|++ .++|+++.++|..
T Consensus 154 a~gll~~Ai~-~~~Pvi~~E~k~l 176 (192)
T d2ozlb1 154 AKGLIKSAIR-DNNPVVVLENELM 176 (192)
T ss_dssp HHHHHHHHHH-SSSCEEEEECHHH
T ss_pred HHHHHHHHHh-CCCCEEEEEcHHH
Confidence 9999999997 6999999998853
|
| >d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.92 E-value=5e-25 Score=213.82 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=134.9
Q ss_pred cchHHHHHHHHHHHHHhhCCceEEEecCCC--CCccccccccccCcccCC-CCCccccccccchHHHHHHHHHhcCCCCc
Q 005021 408 AEATRNLSQTCLNALAKTLPGLLGGSADLA--SSNMTLLKMFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSPGLI 484 (719)
Q Consensus 408 ~~s~r~a~~~~L~~l~~~dp~iv~~saDl~--~s~~~~~~g~~~f~~~~~-p~R~~d~GIaE~~~vg~AaGlA~~G~~~~ 484 (719)
+++++++++++|.+.+++||+++++++|++ ++.+..++| +++ +| |+|++|+||+|++++|+|.|+|+.| ++
T Consensus 2 ~~t~~~Ai~~al~~~m~~d~~v~i~GedV~~~GGvf~~t~G---L~~-~fG~~Rv~dtPisE~~~~G~a~G~Al~G--~r 75 (192)
T d1w85b1 2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEG---LQA-EFGEDRVFDTPLAESGIGGLAIGLALQG--FR 75 (192)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTT---HHH-HHCTTTEEECCSCHHHHHHHHHHHHHTT--CE
T ss_pred ceeHHHHHHHHHHHHHhhCCCEEEEecCCCccCcccccchh---hHh-hhhhheeecccccccchHHHHHHHHhcc--Cc
Confidence 367889999999999999999999999996 344444555 434 67 7999999999999999999999999 69
Q ss_pred cEEE-ehhhhHHhHHHHHHHH-h---h-----hcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCCCCeEEEeeCCHHH
Q 005021 485 PYCA-TFFVFTDYMRAAIRIS-A---L-----CEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNE 554 (719)
Q Consensus 485 Pv~~-~y~~F~~ra~dqir~~-a---~-----~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~iPnl~V~~P~d~~e 554 (719)
||+. +|.+|+..++|||.+. | + .++|++++.. .|.+. ..|++| +....++|.++||++|++|+++.|
T Consensus 76 pIve~~~~dF~~~a~dqi~n~aak~~~~sgg~~~~P~viR~~-~G~g~-~~g~~H-Sqs~e~~f~~~PGlkVv~Ps~p~D 152 (192)
T d1w85b1 76 PVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGGV-HTPELH-SDSLEGLVAQQPGLKVVIPSTPYD 152 (192)
T ss_dssp EEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSSS-CCCTTS-SCCCHHHHTTSTTCEEECCSSHHH
T ss_pred eEEEEEeccchhHHHHHHHHHHhhcchhcCCccccceEEEec-ccccc-CCcccc-ccCHHHHhhcCCCeeEEeeCCHHH
Confidence 9996 6999999999999764 3 2 3789888873 23332 346655 455559999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEcCCCC
Q 005021 555 TAGAYKVAVANRKRPSILALSRQKL 579 (719)
Q Consensus 555 ~~~~l~~a~~~~~~P~~irl~r~~~ 579 (719)
++++|+.|++ .++|+++.++|...
T Consensus 153 a~gll~~Ai~-~~~Pvi~~E~k~ly 176 (192)
T d1w85b1 153 AKGLLISAIR-DNDPVIFLEHLKLY 176 (192)
T ss_dssp HHHHHHHHHH-SSSCEEEEEETTTS
T ss_pred HHHHHHHHHh-CCCCEEEEEcHHHh
Confidence 9999999997 69999999998654
|
| >d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Transketolase C-terminal domain-like domain: Transketolase (TK), C-domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=3.8e-23 Score=193.18 Aligned_cols=126 Identities=40% Similarity=0.636 Sum_probs=114.7
Q ss_pred ccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEE
Q 005021 587 IDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVS 666 (719)
Q Consensus 587 ~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvv 666 (719)
.+.+.+|+|++++.+ ++|++|||+|++|++|++||+.|+++||+++|||++|++||+.+...|...+++.+.. +++
T Consensus 5 ~e~v~kGaYiL~~~~---~pdvtiiAsGsev~~AleAa~~L~~~GI~v~Vvs~ps~~~~~~q~~~~~~~~~~~~~~-~v~ 80 (146)
T d1gpua3 5 IESASKGGYVLQDVA---NPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVP-IMS 80 (146)
T ss_dssp HHHHTTSCEEEECCS---SCSEEEEECTHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCSSSC-EEE
T ss_pred hhhhhccCEEEeeCC---CCCEEEEEeCHHHHHHHHHHHHHHhhccCccEEEeehhhHHHhhhHHHhhhhcccccc-eee
Confidence 456789999988642 5799999999999999999999999999999999999999999988888888887766 599
Q ss_pred EccccccCchhhhcCCceEEeeCcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 667 IEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 667 vE~~~~~G~~~~~~~~~~~ig~d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
+|++...||..+.. ..+|+|.|+.||+.++|+++||||+++|+++|+++|
T Consensus 81 iEa~~~~gw~~~~~---~~iGid~FG~Sg~~~~L~~~fGlt~~~I~~~v~~~L 130 (146)
T d1gpua3 81 VEVLATTCWGKYAH---QSFGIDRFGASGKAPEVFKFFGFTPEGVAERAQKTI 130 (146)
T ss_dssp ECSSCSTTGGGTCS---EEECCCSCCCCSCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred EEeccccchhhccC---ceECcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999998875 679999999999999999999999999999999864
|
| >d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Transketolase C-terminal domain-like domain: Transketolase (TK), C-domain species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=99.85 E-value=1.2e-21 Score=182.14 Aligned_cols=124 Identities=46% Similarity=0.778 Sum_probs=112.6
Q ss_pred cccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEE
Q 005021 588 DGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSI 667 (719)
Q Consensus 588 ~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvv 667 (719)
+.+.+|+|.+.+.. ++|++|||+|++|++|++||+.|+++ |+++||+|+|+++|+.+...|..++++.... ++++
T Consensus 4 e~v~kGaYil~~~~---~~dvtiiAtGseV~~AleAA~~L~~~-I~~~VVS~ps~~~~~~~~~~y~~~vl~~~~~-~v~v 78 (143)
T d1r9ja3 4 EGVRHGAYSVVDVP---DLQLVIVASGSEVSLAVDAAKALSGE-LRVRVVSMPCQELFDAQPDTYRQAVLPAGVP-VVSV 78 (143)
T ss_dssp HHHHTSCEEEECCT---TCSEEEEECGGGHHHHHHHHHHHTTT-CCEEEEECSCHHHHHTSCHHHHHHHSCTTSC-EEEE
T ss_pred HHhcccCEEEeeCC---CCCEEEEEccHHHHHHHHHHHHHHhh-cceeEeeeeehhhhhhhhHHHHHHhCCCccc-ceee
Confidence 45789999887743 68999999999999999999999865 9999999999999999999998899987766 5999
Q ss_pred ccccccCchhhhcCCceEEeeCcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 668 EAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 668 E~~~~~G~~~~~~~~~~~ig~d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
|++...||.++.+ ..||+|+|+.||+.++|+++||||+++|+++++++|
T Consensus 79 Ea~~~~gw~~~~~---~~iGid~FG~Sg~~~~L~~~fGlt~e~Iv~~~~~ll 127 (143)
T d1r9ja3 79 EAYVSFGWEKYSH---AHVGMSGFGASAPAGVLYKKFGITVEEVVRTGRELA 127 (143)
T ss_dssp CSSCCTTGGGTCS---EEESCSSCCCSSCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred EeecccceeecCC---cEEecCCccccCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999988875 679999999999999999999999999999999874
|
| >d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Transketolase C-terminal domain-like domain: Transketolase (TK), C-domain species: Maize (Zea mays) [TaxId: 4577]
Probab=99.85 E-value=3.6e-21 Score=178.50 Aligned_cols=133 Identities=80% Similarity=1.222 Sum_probs=116.0
Q ss_pred CccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEE
Q 005021 586 SIDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARV 665 (719)
Q Consensus 586 ~~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vv 665 (719)
+.+.+.+|+|.+.+......+||+|+|+|+||++|++||+.|+++||+++||+++|+++|+.+...++..++......++
T Consensus 4 ~~e~i~kG~Y~l~~~~~~~~~dv~liasGs~v~~al~Aa~~L~~~gi~~~Vvs~p~~~~~~~~~~~~~~~i~~~~~~~~~ 83 (136)
T d1itza3 4 SIEGVEKGGYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARI 83 (136)
T ss_dssp CHHHHTTSSEEEEECCSTTCCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEE
T ss_pred cHHhhheeCEEEeecCCCCCCCEEEEEecHHHHHHHHHHHHHHhccccccccccccchhhhhhhhhhhhccccccccccc
Confidence 34568899999976421124699999999999999999999999999999999999999999887777777775544468
Q ss_pred EEccccccCchhhhcCCceEEeeCcCCCCCCHHHHHHHhCCCHHHHHHHHHHh
Q 005021 666 SIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 718 (719)
Q Consensus 666 vvE~~~~~G~~~~~~~~~~~ig~d~f~~~g~~~el~~~~gl~~e~I~~~i~~~ 718 (719)
++|.+...+|.++++.+...+|+|.|+.||++++|+++||||+++|+++|+++
T Consensus 84 ~ie~~~~~~w~~~~~~~~~~~g~d~FG~Sg~~~~L~~~fglt~~~Iv~~~ks~ 136 (136)
T d1itza3 84 SIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKEYGITVESIIAAAKSF 136 (136)
T ss_dssp EECSSCCTTTHHHHCSSCEEECCCSCCCSSCHHHHHHHHTCSHHHHHHHHTTC
T ss_pred hhhhhhhhhHHHhcCCcCccccccCccCCCCHHHHHHHhCCCHHHHHHHHHcC
Confidence 99999999999998877788999999999999999999999999999999863
|
| >d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Transketolase C-terminal domain-like domain: Transketolase (TK), C-domain species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=7.6e-21 Score=176.34 Aligned_cols=130 Identities=45% Similarity=0.755 Sum_probs=110.2
Q ss_pred cccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEE
Q 005021 588 DGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSI 667 (719)
Q Consensus 588 ~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvv 667 (719)
..+.+|+|++++.. +++|++||++|+|+++|++|+++|+++||+++|||++|++|||++...+.....+.......++
T Consensus 7 ~~i~kG~Yvl~~~~--~~~dv~iiasGs~v~~aleAa~~L~~~gI~~~Vi~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~ 84 (136)
T d2r8oa3 7 ANIARGGYVLKDCA--GQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAV 84 (136)
T ss_dssp HHGGGSCEEEECCS--SSCSEEEEECGGGHHHHHHHHHHHHHHTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEE
T ss_pred hhhhccCEEEeecC--CCCCEEEEeeccchHHHHHHHHHHHhcCCCceEeechhhhHHHHhHHHHHHHhcccccccceeE
Confidence 35789999887632 2579999999999999999999999999999999999999999988766555544222224677
Q ss_pred ccccccCchhhhcCCceEEeeCcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 668 EAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 668 E~~~~~G~~~~~~~~~~~ig~d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
|.+...+|.++++.+...+|+|+|+.||++++|+++||||+++|+++|+++|
T Consensus 85 ~~g~~~~~~~~~~~~~~~~gid~Fg~Sg~~~~L~~~~Gl~~~~I~~~i~~~L 136 (136)
T d2r8oa3 85 EAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAKELL 136 (136)
T ss_dssp EEEEGGGGHHHHTTSSEEEEECSCCCSSCHHHHHHHTTCSHHHHHHHHHHHC
T ss_pred EecCcchHHHhhcCCCcccccccCCCCCCHHHHHHHcCCCHHHHHHHHHhhC
Confidence 7777778888887777789999999999999999999999999999999986
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Probab=99.78 E-value=2.7e-18 Score=185.27 Aligned_cols=160 Identities=18% Similarity=0.145 Sum_probs=124.1
Q ss_pred CcEEEeCCCCchHHHHHHHHhCCCCCChhHHh-h-hhhcCCCCCC-----CCCCCCCCCccccCCCcchhHHHHHHHHHH
Q 005021 142 DRFVLSAGHGCMLQYALLHLAGYDSVQEDDLK-N-FRQWGSKTPG-----HPENFETPGIEVTTGPLGQGMANAVGLALA 214 (719)
Q Consensus 142 Dr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~-~-~r~~~~~~~g-----~p~~~~~pgi~~~tG~lG~gls~A~G~A~A 214 (719)
+.+|++ .|.. .++++..|. +..++. . |.+..+.+.| |.. ....++...+|++|++++.|+|+|+|
T Consensus 125 ~D~~f~-~yR~---~g~~larG~---~~~~~~~e~~g~~~g~~~Gr~~~~h~~-~~~~~~~~~s~~vg~q~p~AvG~A~a 196 (407)
T d1qs0a_ 125 TDMCFP-TYRQ---QSILMARDV---SLVEMICQLLSNERDPLKGRQLPIMYS-VREAGFFTISGNLATQFVQAVGWAMA 196 (407)
T ss_dssp TSEEEC-CSSC---HHHHHHTTC---CHHHHHHHHHTCTTCTTTTCSCTTCCC-BGGGTBCCCCSSSSHHHHHHHHHHHH
T ss_pred CCEEEe-cccC---HHHHHHHHh---hHHHHHHHHhhccCCCCCCCCcccccc-ccccceeccccccccccchhhhhHHH
Confidence 346775 5999 777788885 565542 1 2233333222 221 12357778999999999999999999
Q ss_pred HHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhh--cchhHHHHHhc
Q 005021 215 EKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA--FTENVDKRFEG 292 (719)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~--~~~~~~~~~~a 292 (719)
.|+++ .+.+++|++|||+++||.+|||||+|+.|+|| +||||+||+|+|+++.... ....+.+|.++
T Consensus 197 ~k~~~----------~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lP-vifv~eNN~~aist~~~~~~~~~~~~~~ra~~ 265 (407)
T d1qs0a_ 197 SAIKG----------DTKIASAWIGDGATAESDFHTALTFAHVYRAP-VILNVVNNQWAISTFQAIAGGESTTFAGRGVG 265 (407)
T ss_dssp HHHTT----------CCCCEEEEEETGGGGSHHHHHHHHHHHHHTCC-EEEEEEECSEETTEEGGGGTTTTCCSTHHHHH
T ss_pred Hhhcc----------CcceecccccccccccchHHHHHHHHhccCcc-eEEEEEEecccccccchhhhccchhHHHHHHh
Confidence 99987 47899999999999999999999999999995 9999999999999987643 24568999999
Q ss_pred cCceEEEE-----------------eeeecCCCcccc-ccccccCC
Q 005021 293 LGWHVIWV-----------------TTTIGFGSPNKA-NSYSVHGS 320 (719)
Q Consensus 293 ~G~~~~~v-----------------~t~~g~g~~~~~-~~~~~h~~ 320 (719)
||++.++| +.++|.||.+++ .+++++++
T Consensus 266 ~Gi~~~~VDGnD~~avy~a~~~A~e~aR~g~gP~lIE~~TyR~~gH 311 (407)
T d1qs0a_ 266 CGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPH 311 (407)
T ss_dssp TTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCS
T ss_pred cCcceEEeccccHHHHHHHHHHHHHHHhcCCCceEEEEeeecCCCC
Confidence 99999999 457789998776 35555444
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.76 E-value=6.7e-18 Score=180.28 Aligned_cols=154 Identities=19% Similarity=0.165 Sum_probs=119.5
Q ss_pred cEEEeCCCCchHHHHHHHHhCCCCCChhHHhhhhhcCCCCCCCCCCCCCCCccccCCCcchhHHHHHHHHHHHHHhhccc
Q 005021 143 RFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARY 222 (719)
Q Consensus 143 r~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~~~r~~~~~~~g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~~~~~~~ 222 (719)
.+|++ .|.. +++.+..|. +..++..+- .|...|... ...-++..+++++|++++.|+|+|+|.|+++
T Consensus 93 D~i~~-~yR~---hg~~la~G~---~~~~~~~~~--~G~~~g~~~-~~~~~~~~~~~ivG~~~p~AvG~A~a~k~~~--- 159 (365)
T d1w85a_ 93 DFILP-GYRD---VPQIIWHGL---PLYQAFLFS--RGHFHGNQI-PEGVNVLPPQIIIGAQYIQAAGVALGLKMRG--- 159 (365)
T ss_dssp CEEEC-CSSC---HHHHHHTTC---CHHHHHHHH--HTCGGGGCC-CTTCCBCCCCCSTTHHHHHHHHHHHHHHHTT---
T ss_pred CEeee-cccc---hheeeecCC---CHHHHHHhh--CCCCCccCC-CCCceeeccccccCccccchhhHHhhhhhcc---
Confidence 35665 4999 677777885 565543221 121111111 1234567789999999999999999999986
Q ss_pred CCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh-hcchhHHHHHhccCceEEEE-
Q 005021 223 NKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-AFTENVDKRFEGLGWHVIWV- 300 (719)
Q Consensus 223 ~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~-~~~~~~~~~~~a~G~~~~~v- 300 (719)
.+++++|++|||++++|.+|||||+|+.|+|| +||||+||+|+|++++.. ....++..+..+||++.+.|
T Consensus 160 -------~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lP-vlfv~eNN~~aist~~~~~~~~~~~~~r~~~~Gi~~~~vD 231 (365)
T d1w85a_ 160 -------KKAVAITYTGDGGTSQGDFYEGINFAGAFKAP-AIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVD 231 (365)
T ss_dssp -------CSCCEEEEEETGGGGSHHHHHHHHHHHHTTCC-EEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEE
T ss_pred -------cCCceeeeccCCcccchhHHHHHHHhhhcccC-ceEEEEEecccccccccccccccchhhhcccccCceEEEe
Confidence 47899999999999999999999999999995 999999999999999875 34567899999999999999
Q ss_pred ----------------eeeecCCCccccc-cccc
Q 005021 301 ----------------TTTIGFGSPNKAN-SYSV 317 (719)
Q Consensus 301 ----------------~t~~g~g~~~~~~-~~~~ 317 (719)
+.++|+||.+.+. ++++
T Consensus 232 G~D~~~v~~a~~~A~~~~R~g~gP~lie~~tyR~ 265 (365)
T d1w85a_ 232 GMDPLAVYAAVKAARERAINGEGPTLIETLCFRY 265 (365)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCS
T ss_pred cchhHHHHHHHHHHHHHhhcCCccEEEEeecccc
Confidence 4577889987753 3444
|
| >d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain domain: Branched-chain alpha-keto acid dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.76 E-value=8.1e-19 Score=162.72 Aligned_cols=120 Identities=20% Similarity=0.143 Sum_probs=99.4
Q ss_pred cccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEE
Q 005021 588 DGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSI 667 (719)
Q Consensus 588 ~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvv 667 (719)
+.+++|+++++++ |+|+|||++|.|+++|++|+++|+++|++++|||++|++|||.+++. +++.+++. +|++
T Consensus 2 Y~~~iGk~~v~r~----G~dvtiis~G~~~~~al~aa~~L~~~gi~~~vid~~~lkPlD~~~i~--~sv~kt~~--vv~v 73 (137)
T d1umdb2 2 YTLPIGKAALRRE----GKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVM--NSVAKTGR--VVLV 73 (137)
T ss_dssp CCCCTTCCEEEEC----CSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECCEEETCCHHHHH--HHHHHHSC--EEEE
T ss_pred ceEeCCEEEEEEe----CCCEEEEEcchhhhhhhhhhhcccccCcceEEEeecccCCcchhhhh--HHHhccCc--EEEE
Confidence 4588999999998 79999999999999999999999999999999999999999998764 56766663 6999
Q ss_pred cccccc-Cchhhh------------cCCceEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 668 EAGSTF-GWEKIV------------GSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 668 E~~~~~-G~~~~~------------~~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
||+... ||++.+ ..++.+++. |.|.+++ +.+.|++|+++|+++|+++|
T Consensus 74 eE~~~~gg~g~~v~~~l~e~~~~~~~~~i~~~~~~d~~~p~~----~~~~~~l~~~~I~~~i~~~l 135 (137)
T d1umdb2 74 SDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA----QDKLYLPTVTRILNAAKRAL 135 (137)
T ss_dssp EEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST----THHHHSCCHHHHHHHHHHHH
T ss_pred EcccccchhHHHHHHHHHHhhhhhcCCCeEEEccCCCCCCcc----hHHHhCcCHHHHHHHHHHHh
Confidence 998774 565422 134567777 7888775 35678999999999999875
|
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2.8e-17 Score=177.07 Aligned_cols=157 Identities=20% Similarity=0.241 Sum_probs=120.6
Q ss_pred CCcEEEeCCCCchHHHHHHHHhCCCCCChhHH-h-hhhhcCCCCCC-----CCCCCCCCCccccCCCcchhHHHHHHHHH
Q 005021 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDL-K-NFRQWGSKTPG-----HPENFETPGIEVTTGPLGQGMANAVGLAL 213 (719)
Q Consensus 141 rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l-~-~~r~~~~~~~g-----~p~~~~~pgi~~~tG~lG~gls~A~G~A~ 213 (719)
.| +|++. |.. .++.+..|. +.+++ . -+.+..+.+.| |.. ....++...++++|.+++.|+|+|+
T Consensus 101 ~D-~~~~~-yR~---h~~~la~G~---~~~~~~ael~g~~~g~~~Grggs~H~~-~~~~~~~~~~~ivg~~~p~A~G~A~ 171 (395)
T d2bfda1 101 TD-LVFGQ-ARE---AGVLMYRDY---PLELFMAQCYGNISDLGKGRQMPVHYG-CKERHFVTISSPLATQIPQAVGAAY 171 (395)
T ss_dssp TS-EEECC-SCC---HHHHHHTTC---CHHHHHHHHHTCTTCTTTTCSCSSCCC-BTTTTBCCCCSSTTTHHHHHHHHHH
T ss_pred CC-eeccc-cch---hHhhhhhhC---CHHHHHHHHhhcccCcccccccccccc-ccccccccccccccccccHHHHHHH
Confidence 35 55644 999 566666784 56554 2 23333333222 221 1234677889999999999999999
Q ss_pred HHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhh-hcchhHHHHHhc
Q 005021 214 AEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEI-AFTENVDKRFEG 292 (719)
Q Consensus 214 A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~-~~~~~~~~~~~a 292 (719)
|.|+++ .+++++|++|||++++|.+|||||+|+.|+|| +||||+||+|+|++++.. ....+++++.++
T Consensus 172 a~k~~~----------~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lP-vlfv~eNN~yaist~~~~~~~~~~i~~ra~~ 240 (395)
T d2bfda1 172 AAKRAN----------ANRVVICYFGEGAASEGDAHAGFNFAATLECP-IIFFCRNNGYAISTPTSEQYRGDGIAARGPG 240 (395)
T ss_dssp HHHHHT----------CCCCEEEEEETTGGGSHHHHHHHHHHHHTTCC-EEEEEEECSEETTEEGGGTCSSSTTGGGTGG
T ss_pred HhhhcC----------cccccccccCCCCccchhHHHHHHHHhhcCCc-eEEEEEecccccccccchhhcchhHHHhhhc
Confidence 999986 47899999999999999999999999999995 999999999999999865 445679999999
Q ss_pred cCceEEEE-----------------eeeecCCCccccc-cccc
Q 005021 293 LGWHVIWV-----------------TTTIGFGSPNKAN-SYSV 317 (719)
Q Consensus 293 ~G~~~~~v-----------------~t~~g~g~~~~~~-~~~~ 317 (719)
||++.+.| +.++|.||.+.+. ++++
T Consensus 241 ~gi~~~~vDG~Dv~aV~~a~~~A~~~~R~g~gP~lIE~~TyR~ 283 (395)
T d2bfda1 241 YGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 283 (395)
T ss_dssp GTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCC
T ss_pred cccceeEEecCcHHHHHHHHHHhhhhhhccCCceEEEEeeecC
Confidence 99999999 4467888887753 4444
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=8.3e-18 Score=179.63 Aligned_cols=160 Identities=18% Similarity=0.204 Sum_probs=124.7
Q ss_pred CCcEEEeCCCCchHHHHHHHHhCCCCCChhHH-hh-hhhcCCCCCC-----CCCCCCCCCccccCCCcchhHHHHHHHHH
Q 005021 141 RDRFVLSAGHGCMLQYALLHLAGYDSVQEDDL-KN-FRQWGSKTPG-----HPENFETPGIEVTTGPLGQGMANAVGLAL 213 (719)
Q Consensus 141 rDr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l-~~-~r~~~~~~~g-----~p~~~~~pgi~~~tG~lG~gls~A~G~A~ 213 (719)
.| +|++ .|.. +++.+..|. +..++ .. |.+.+|.+.| |.. +...++...++++|.+++.|+|+|+
T Consensus 83 ~D-~~~~-~yR~---h~~~la~G~---~~~~~~ae~~gk~~g~~~Grggs~H~~-~~~~~~~~~~~ivg~~~p~a~G~A~ 153 (362)
T d1umda_ 83 FD-WVFP-YYRD---HGLALALGI---PLKELLGQMLATKADPNKGRQMPEHPG-SKALNFFTVASPIASHVPPAAGAAI 153 (362)
T ss_dssp TS-EEEC-CTTT---HHHHHHHTC---CHHHHHHHHHTBTTCTTTTCSCSSCCC-BTTTTBCCCCSSTTTTHHHHHHHHH
T ss_pred CC-eEEe-cccc---HHHHHHHHh---hHHHHHHHHhcccCCCccccccccccc-ccccCcccccccccccchHHHHHHH
Confidence 45 5665 4988 777777885 55554 22 3344444433 222 2345778899999999999999999
Q ss_pred HHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhh-cchhHHHHHhc
Q 005021 214 AEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIA-FTENVDKRFEG 292 (719)
Q Consensus 214 A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~-~~~~~~~~~~a 292 (719)
|.|+++ .+.+++|++|||++++|.+|||||+|+.|+|| +||||+||+|+|++++... ...++.++.++
T Consensus 154 a~k~~~----------~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lP-vifv~eNN~~aist~~~~~~~~~~~~~~a~~ 222 (362)
T d1umda_ 154 SMKLLR----------TGQVAVCTFGDGATSEGDWYAGINFAAVQGAP-AVFIAENNFYAISVDYRHQTHSPTIADKAHA 222 (362)
T ss_dssp HHHHTT----------CCCCEEEEEETGGGGSHHHHHHHHHHHHTTCS-EEEEEEECSEETTEEHHHHCSSSCSGGGGGG
T ss_pred hhhccc----------ccceeeeeccCCcccCCchHHHHHHhhhccCC-eeeeeeecccccccccccccccchhhhhhhh
Confidence 999986 47899999999999999999999999999995 9999999999999998754 45578999999
Q ss_pred cCceEEEE-----------------eeeecCCCcccc-ccccccCC
Q 005021 293 LGWHVIWV-----------------TTTIGFGSPNKA-NSYSVHGS 320 (719)
Q Consensus 293 ~G~~~~~v-----------------~t~~g~g~~~~~-~~~~~h~~ 320 (719)
||++.+.| +.++|+||.+.+ .++++.++
T Consensus 223 ~gi~~~~vDGnDv~~v~~a~~~Ai~~~R~g~gP~lIE~~tyR~~gH 268 (362)
T d1umda_ 223 FGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPH 268 (362)
T ss_dssp TTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCS
T ss_pred heeeeeEeccchHHHHHHHHHHHHHHHHhcCCCEEEEcccccccCC
Confidence 99999999 457788998776 34455443
|
| >d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain domain: E1-beta subunit of pyruvate dehydrogenase, C-domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.6e-18 Score=160.75 Aligned_cols=120 Identities=18% Similarity=0.161 Sum_probs=101.0
Q ss_pred cccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEcc
Q 005021 590 VEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEA 669 (719)
Q Consensus 590 ~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~ 669 (719)
+|+|+++++++ |.|+|||+||+|+++|++|+++|+++|++++|||++|++|||.+.+. +++.+++. ++++||
T Consensus 2 ipiGK~~i~~~----G~ditiis~G~~~~~al~aa~~L~~~gi~~~vid~~~lkPld~~~i~--~~~~k~~~--iivvee 73 (138)
T d2ozlb2 2 IPIGKAKIERQ----GTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIE--ASVMKTNH--LVTVEG 73 (138)
T ss_dssp CCTTCCEEEEC----CSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEECCEEETCCHHHHH--HHHHHHSC--EEEECS
T ss_pred ccCCeeEEEEe----CCCEEEEEccHHHHhHHHHhhhhcccCcceEEEEeccccCCcchhhh--hhhccccc--eEEeec
Confidence 68999999998 79999999999999999999999999999999999999999998875 56666653 699999
Q ss_pred ccc-cCchhhh-------------cCCceEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 670 GST-FGWEKIV-------------GSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 670 ~~~-~G~~~~~-------------~~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
+.. .|+++.+ ..++.++|. |.|.++++ .|.+.+++|+++|+++|+++|
T Consensus 74 ~~~~gG~gs~i~~~l~e~~~~~~l~~~v~ri~~~d~~ip~~~--~le~~~~~~~~~I~~~i~~~l 136 (138)
T d2ozlb2 74 GWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAK--ILEDNSIPQVKDIIFAIKKTL 136 (138)
T ss_dssp SCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCSSCCCSSH--HHHHTTSCCHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhhhhhhhccCccEEEccCCcCCCccH--HHHHHhCcCHHHHHHHHHHHc
Confidence 986 4565421 235678999 89988873 577777889999999999874
|
| >d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain domain: Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.74 E-value=1.6e-18 Score=159.61 Aligned_cols=116 Identities=22% Similarity=0.197 Sum_probs=97.3
Q ss_pred ccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccc
Q 005021 593 GAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGST 672 (719)
Q Consensus 593 G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~ 672 (719)
|+++++++ |+|+|||+||.|+++|++|++.|+++||+++|||++|++|||.+.+. +++.+++. ++++||+..
T Consensus 1 Gk~~v~~~----G~dvtIis~G~~~~~al~Aa~~L~~~gi~~~vid~~~lkPlD~~~i~--~~~~kt~~--vivveE~~~ 72 (132)
T d1w85b2 1 GKADIKRE----GKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPLDIETII--GSVEKTGR--AIVVQEAQR 72 (132)
T ss_dssp TCCEEEEC----CSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSEEESCCHHHHH--HHHHHHSC--EEEEEEEET
T ss_pred CceEEEEe----CCCEEEEEChHHHHHHHHHHHHHHhcCCCeEEEeeeccCCcchhhhh--HHHhccCC--eeEEecccc
Confidence 67888887 79999999999999999999999999999999999999999998764 56666653 588888876
Q ss_pred -cCchhhh------------cCCceEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 673 -FGWEKIV------------GSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 673 -~G~~~~~------------~~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
.|+++.+ ..++.++|+ |.|+++++ +.+.|++++++|+++|+++|
T Consensus 73 ~gG~gs~i~~~l~~~~~~~l~~~v~~ig~~d~~~p~~~---~e~~~~~~~~~I~~~i~~ll 130 (132)
T d1w85b2 73 QAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQ---AESVWLPNFKDVIETAKKVM 130 (132)
T ss_dssp TSSSHHHHHHHHHHHHGGGCSSCCEEEEECSSSSCCGG---GHHHHSCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhchhccCCCeEEecCCCcCCCCcC---HHHHhCcCHHHHHHHHHHHh
Confidence 4565421 246788999 89998875 55678999999999999874
|
| >d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain domain: Branched-chain alpha-keto acid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=3.1e-18 Score=158.74 Aligned_cols=120 Identities=11% Similarity=0.074 Sum_probs=100.6
Q ss_pred cccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhC-CCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEE
Q 005021 588 DGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKG-GKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVS 666 (719)
Q Consensus 588 ~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~-Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvv 666 (719)
+.+++|+++++++ |+|+|||+||.|++.|++|+++|+++ |++++|||++|++|||.+.+. +++.+++. +++
T Consensus 2 y~i~iGk~~v~~~----G~DitIis~G~~~~~al~aa~~L~~~~gi~~~vid~~~l~PlD~~~i~--~s~~kt~~--liv 73 (138)
T d2bfdb2 2 YNIPLSQAEVIQE----GSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTIC--KSVIKTGR--LLI 73 (138)
T ss_dssp CCCCSSCCEEEEC----CSSEEEEECTTHHHHHHHHHHHHHHHHCCCEEEEECCEEESCCHHHHH--HHHHHHSC--EEE
T ss_pred eeEeCCEEEEEEe----CCeEEEEEChHHHHHHHHHHHHHHhcCCcceeeeeeccccccchHHHH--HHhcccCe--EEE
Confidence 3589999999998 79999999999999999999999765 999999999999999999874 57777663 699
Q ss_pred Ecccccc-Cchhh------------hcCCceEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 667 IEAGSTF-GWEKI------------VGSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 667 vE~~~~~-G~~~~------------~~~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
+||++.. |+|+. +..++.++|. |.|.++ .|.+.|.+|+++|+++|+++|
T Consensus 74 vee~~~~gG~gs~i~~~l~~~~~~~l~~~~~ri~~~d~p~p~----~le~~~~~~~~~I~~~i~~ll 136 (138)
T d2bfdb2 74 SHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH----IFEPFYIPDKWKCYDALRKMI 136 (138)
T ss_dssp EEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCS----TTHHHHSCCHHHHHHHHHHHH
T ss_pred ecCccccccHHHHHHHHHHHhhHhhCCCCcEEECCCCCCCCh----hHHHHhCCCHHHHHHHHHHHh
Confidence 9999775 56542 1246788999 777654 278899999999999999874
|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.1e-16 Score=168.63 Aligned_cols=159 Identities=20% Similarity=0.198 Sum_probs=118.4
Q ss_pred CcEEEeCCCCchHHHHHHHHhCCCCCChhHHh-h-hhhcCCCCC---CCCCCCCCCCccccCCCcchhHHHHHHHHHHHH
Q 005021 142 DRFVLSAGHGCMLQYALLHLAGYDSVQEDDLK-N-FRQWGSKTP---GHPENFETPGIEVTTGPLGQGMANAVGLALAEK 216 (719)
Q Consensus 142 Dr~Ils~GH~~~~~Ya~l~l~G~~~~~~~~l~-~-~r~~~~~~~---g~p~~~~~pgi~~~tG~lG~gls~A~G~A~A~~ 216 (719)
|.+|++. |.. .++.+..|. +.+++. . +.+.+|... |+... ..+++..+++++|.++++|+|+|+|.|
T Consensus 82 ~D~~~~~-yR~---~~~~la~G~---~~~~~~ae~~gk~~g~~~G~~~~~h~-~~~~~~~~~~ivg~~~p~A~G~A~a~k 153 (361)
T d2ozla1 82 TDHLITA-YRA---HGFTFTRGL---SVREILAELTGRKGGCAKGKGGSMHM-YAKNFYGGNGIVGAQVPLGAGIALACK 153 (361)
T ss_dssp TSEEECC-SCC---HHHHHHTTC---CHHHHHHHHTTCTTSTTTTSSCTTCC-CBTTBCCCCCSTTTHHHHHHHHHHHHH
T ss_pred cCEeccc-ccc---hheeeeecc---cchhhhhhccCCcccccccccccccc-ccccccCccccccccchhHHHHHHHhh
Confidence 3467764 999 777777885 565542 2 222222222 22222 245788899999999999999999999
Q ss_pred HhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccchhhhc-chhHHHHHhccCc
Q 005021 217 HLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGDTEIAF-TENVDKRFEGLGW 295 (719)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~~~~~~-~~~~~~~~~a~G~ 295 (719)
+++ .+.+++|++|||+++||.+|||||+|+.|+|| +||||+||+|+|++++.... ..+... +++|+
T Consensus 154 ~~~----------~~~v~~~~~GDGa~~eG~f~Ealn~A~~~~lP-vifv~eNN~yaist~~~~~~~~~~~~~--~~~~~ 220 (361)
T d2ozla1 154 YNG----------KDEVCLTLYGDGAANQGQIFEAYNMAALWKLP-CIFICENNRYGMGTSVERAAASTDYYK--RGDFI 220 (361)
T ss_dssp HHT----------CCCCEEEEEETTGGGCHHHHHHHHHHHHTTCC-EEEEEEECSEETTEEHHHHCSCCCGGG--TTTTS
T ss_pred hcc----------CCCeEEEEecCCCccCcchhhhhhhhhhccCc-eEEEEEeCCcccCCCchhccccccccc--ccccc
Confidence 986 47899999999999999999999999999995 99999999999999986433 333333 46678
Q ss_pred eEEEE-----------------eeeecCCCcccc-ccccccCCC
Q 005021 296 HVIWV-----------------TTTIGFGSPNKA-NSYSVHGSA 321 (719)
Q Consensus 296 ~~~~v-----------------~t~~g~g~~~~~-~~~~~h~~~ 321 (719)
+.+.| +.+.|+||.+.+ .++++++++
T Consensus 221 ~~~~vdGnD~~av~~a~~~A~~~~R~g~gP~liE~~TyR~~gHs 264 (361)
T d2ozla1 221 PGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHE 264 (361)
T ss_dssp CEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSS
T ss_pred ceEEeccCCchHHHHHHHHHHHHHhccCCCEEEEEeeecCCCCc
Confidence 88887 457788998775 356666654
|
| >d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain domain: E1-beta subunit of pyruvate dehydrogenase, C-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.68 E-value=1.8e-17 Score=153.14 Aligned_cols=118 Identities=20% Similarity=0.156 Sum_probs=87.8
Q ss_pred cccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEE
Q 005021 588 DGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSI 667 (719)
Q Consensus 588 ~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvv 667 (719)
+.+++|+++++++ |+|+|||++|.|+++|++|++.|. ++++|||++|++|||.+++. +++.+++. +|++
T Consensus 2 Y~~~~Gk~~ilr~----G~dvtIi~~G~mv~~al~aa~~l~---~~~~vid~~~lkPlD~~~i~--~~~~k~~~--vvvv 70 (135)
T d1ik6a2 2 YVVEIGKARVARE----GDDVTLVTYGAVVHKALEAAERVK---ASVEVVDLQTLNPLDFDTVL--KSVSKTGR--LIIA 70 (135)
T ss_dssp CCCCTTCCEEEEC----CSSEEEEECTTHHHHHHHHHHTSS---SCEEEEECCEEETTCHHHHH--HHHHHHCC--EEEE
T ss_pred ceeeCCEEEEEEe----CCcEEEEEeccchHHHHHHHHhhc---cchhhhccccccCCChHHHh--HHHhccCC--cEEE
Confidence 4589999999998 799999999999999999998873 68999999999999999875 46666653 6999
Q ss_pred cccccc-Cchhh------------hcCCceEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 668 EAGSTF-GWEKI------------VGSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 668 E~~~~~-G~~~~------------~~~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
||++.. |+|+. +..++.++|+ |.|..+ .++++.||+|+++|+++|+++|
T Consensus 71 Ee~~~~gG~gs~i~~~l~e~~~~~l~~~~~~ig~~d~~~~~---~~le~~~~l~~~~I~~~i~~~l 133 (135)
T d1ik6a2 71 HDSPKTGGLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSP---IAADAAYAPTVERIIKAIEYVM 133 (135)
T ss_dssp EEEESTTSHHHHHHHHHHHHSGGGCSSCCEEEEECCCC---------------CHHHHHHHHHHHH
T ss_pred ecCccccchHHHHHHHHHHhhhcccCCCeEEEcCCCcCCCc---HHHHHHhCcCHHHHHHHHHHHh
Confidence 999875 46542 2346788999 665443 4678899999999999999875
|
| >d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain domain: 2-oxoisovalerate dehydrogenase E1b, C-domain species: Pseudomonas putida [TaxId: 303]
Probab=99.65 E-value=1e-16 Score=147.44 Aligned_cols=117 Identities=21% Similarity=0.119 Sum_probs=97.3
Q ss_pred cccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEE
Q 005021 588 DGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSI 667 (719)
Q Consensus 588 ~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvv 667 (719)
+.+++|+++++++ |+|+|||+||.|+++|++|++ +.|++++|||++|++|||.+.+. +++.+++. ++|+
T Consensus 2 y~~piGk~~v~~~----G~Ditiis~G~~v~~a~~a~~---~~gi~~~vidl~~l~PlD~~~i~--~~~~kt~~--vi~v 70 (134)
T d1qs0b2 2 YTVPLDKAAITRP----GNDVSVLTYGTTVYVAQVAAE---ESGVDAEVIDLRSLWPLDLDTIV--ESVKKTGR--CVVV 70 (134)
T ss_dssp CCCCTTCCCEEEC----CSSCEEEECTTHHHHHHHHHH---HHCCCCEEEECSEEESCCHHHHH--HHHHHHSC--EEEE
T ss_pred eeecCCEEEEEEe----CCCEEEEEeehHHHHHHHHHh---hcCcchhheeccccCCcchhhHH--HHHhCCce--EEEE
Confidence 4588999999998 799999999999999999986 46999999999999999998875 56766663 6999
Q ss_pred cccccc-Cchhh------------hcCCceEEee-CcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 668 EAGSTF-GWEKI------------VGSKGKAIGI-DRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 668 E~~~~~-G~~~~------------~~~~~~~ig~-d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
|+++.. |+|+. +..++.++|. |.|.+++. .+.|.+++++|+++|+++|
T Consensus 71 Ee~~~~gG~gs~i~~~l~e~~~~~L~~~v~ri~~~d~p~p~~~----e~~~~~~~~~I~~~i~~ll 132 (134)
T d1qs0b2 71 HEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHAQ----EWAYFPGPSRVGAALKKVM 132 (134)
T ss_dssp ESSCSTTSTHHHHHHHHHHHSSSSCCSCCEEEECCSSCCCSTT----HHHHSCCHHHHHHHHHHSS
T ss_pred ecCccccchHHHHHHHHHHhhhhccCCCeEEECCCCcCCCCCh----HHHhCcCHHHHHHHHHHHh
Confidence 999875 56542 2346789999 79988874 3457899999999999875
|
| >d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component, C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Transketolase C-terminal domain-like domain: Pyruvate dehydrogenase E1 component, C-domain species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=2.6e-14 Score=138.21 Aligned_cols=131 Identities=23% Similarity=0.265 Sum_probs=102.5
Q ss_pred ccccccccEEEecCCCCCCCCEEEEEeCHhHHHHHHHHH-HHHhCCCcEEEEecCChhhHHHHHHHhhhhhcc-------
Q 005021 587 IDGVEKGAYIISDNSSGNKPDVILIGTGSELEIAAKAAE-ELRKGGKAVRVVSFVSWELFDEQSDAYKESVLP------- 658 (719)
Q Consensus 587 ~~~~~~G~~~i~~~~~~~g~dvtIva~G~~v~~al~Aa~-~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~------- 658 (719)
.+.+.+|.|++.+... .+++|+|+++|++|.+|++|++ +|++.|+.++|++++|+..|+++...|.+....
T Consensus 6 ~egI~kG~Y~l~~~~~-~~p~v~LlaSGsev~~aleAa~~ll~~~gi~~~VvS~pS~~~l~~~~~~~~~~~~~~~~~~~~ 84 (186)
T d2ieaa3 6 EEGIRKGIYKLETIEG-SKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPR 84 (186)
T ss_dssp HHHHHHTCEEEEEECC-SSEEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSCHHHHHHHHHHHHHHHHHCTTSCCC
T ss_pred hhhhhhCcEEeeecCC-CCceEEEEEehHHHHHHHHHHHHHHHhcCCCceEEEecCHHHHHHhhHHHHhhcccccccccc
Confidence 3568899999876320 1479999999999999999998 567779999999999999999998776554321
Q ss_pred --------CCCceEEEEccccc---cCchhhhc-CCceEEeeCcCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 005021 659 --------AAVSARVSIEAGST---FGWEKIVG-SKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 719 (719)
Q Consensus 659 --------~~~~~vvvvE~~~~---~G~~~~~~-~~~~~ig~d~f~~~g~~~el~~~~gl~~e~I~~~i~~~l 719 (719)
.... ++++++... .+|..++. .+...+|+|.|+.||+.++|+++||+|+++|++++.+.|
T Consensus 85 ~~~~~~~~~~~p-~va~~~~~~~~~~~~~~~~~g~~~~~LG~d~FG~S~~~~~L~~~Fgi~~~~Iv~aAl~~L 156 (186)
T d2ieaa3 85 VPYIAQVMNDAP-AVASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGEL 156 (186)
T ss_dssp CCHHHHHCCSSC-EEEECSSCTHHHHTTGGGCCSSCEEEECCCSCBCCSCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred chhhhcccCCCC-eEEEEEeeeccchhhcccccCCCcEEEEeCCcCCCCChHHHHHHcCCCHHHHHHHHHHHH
Confidence 1123 466766544 34555553 356789999999999999999999999999999987653
|
| >d2ieaa1 c.36.1.6 (A:471-700) Pyruvate dehydrogenase E1 component, Pyr module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Pyruvate dehydrogenase E1 component, Pyr module species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=4e-11 Score=115.52 Aligned_cols=172 Identities=16% Similarity=0.146 Sum_probs=131.7
Q ss_pred CcchHHHHHHHHHHHHHhhC---CceEEEecCCCCCcccc--ccccccCcc-----------------cCCCCCcccccc
Q 005021 407 PAEATRNLSQTCLNALAKTL---PGLLGGSADLASSNMTL--LKMFGDFQK-----------------DTPEERNVRFGV 464 (719)
Q Consensus 407 ~~~s~r~a~~~~L~~l~~~d---p~iv~~saDl~~s~~~~--~~g~~~f~~-----------------~~~p~R~~d~GI 464 (719)
...+|..+|++.|.+|++.. ++||-+.+|++.+.+.. ++.++-|.. +.-.+|.++.||
T Consensus 20 r~iSTt~Af~riL~~L~rd~~lg~RiVpivPDearTfgm~~~f~q~GIys~~gq~y~p~D~~~~~~y~e~~~GQ~le~GI 99 (230)
T d2ieaa1 20 KEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGI 99 (230)
T ss_dssp SCBCHHHHHHHHHHHHTTCTTTGGGEEEEESSCSGGGTCHHHHHHHCBBCC-----------------CBTTCCBEECCS
T ss_pred ccccHHHHHHHHHHHHhcCcccccceeeecCccceecchhhhhhhcceeeeccccccccccccceEccccCCCcEeeccc
Confidence 35789999999999999832 36999999997654332 111112211 123589999999
Q ss_pred ccchHHHH--HHHHH--hcCCCCccEEEehhhhHHhHHH-HHHHHh-hhcCCEEEEEecCCCccCCCCCCCCChhhhhHH
Q 005021 465 REHGMGAI--CNGIA--LHSPGLIPYCATFFVFTDYMRA-AIRISA-LCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASF 538 (719)
Q Consensus 465 aE~~~vg~--AaGlA--~~G~~~~Pv~~~y~~F~~ra~d-qir~~a-~~~~pV~~v~~~~g~g~g~dG~THq~~edia~l 538 (719)
+|.++++. |+|.| .+|.+++||...|+.|..+..+ .+...+ ++.-..++++|.+|.++...|..||.....-+-
T Consensus 100 ~E~g~~~~~~Aagtsy~~~g~~miP~y~~YsmFg~qr~~dl~waa~d~~argFl~g~T~grtTL~gEGlqHqdg~s~l~~ 179 (230)
T d2ieaa1 100 NELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQS 179 (230)
T ss_dssp CHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHHHHHHHHHHHHTTCCSEEEEESCSTTTSTTTCBTTCCSCHHHHH
T ss_pred hhhhHHHHHHHhhhhHhhcCCccceeeeehhHHHhhhHhHHHHHHHhhccCceEEEecCCCCeecCCcccccccccceec
Confidence 99999885 66664 5788899999999999765444 455555 455669999998889887788899999888888
Q ss_pred cCCCCeEEEeeCCHHHHHHHHHHHHHc----CCCcEEEEEcCCC
Q 005021 539 RAMPNILMLRPADGNETAGAYKVAVAN----RKRPSILALSRQK 578 (719)
Q Consensus 539 r~iPnl~V~~P~d~~e~~~~l~~a~~~----~~~P~~irl~r~~ 578 (719)
..+||+.-|-|+.+.|+..++++.+++ ...-+|.|++--+
T Consensus 180 ~~~P~~~sydPafa~Ela~i~~~Gl~rM~~~~~~~v~yylt~~n 223 (230)
T d2ieaa1 180 LTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYITTLN 223 (230)
T ss_dssp TTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCCCEEEEECCS
T ss_pred ccCCCceEEcchHHHHHHHHHHHHHHHHhCCCCCcEEEEEEecC
Confidence 999999999999999999999998864 2346788886543
|
| >d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TK C-terminal domain-like superfamily: TK C-terminal domain-like family: Pyruvate-ferredoxin oxidoreductase, PFOR, domain II domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain II species: Desulfovibrio africanus [TaxId: 873]
Probab=98.53 E-value=6.8e-08 Score=89.98 Aligned_cols=67 Identities=10% Similarity=0.212 Sum_probs=54.9
Q ss_pred CCCEEEEEeCHhHHHHHHHHHHHHhCCCcEEEEecCChhhHHHHHHHhhhhhccCCCceEEEEccccccC
Q 005021 605 KPDVILIGTGSELEIAAKAAEELRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFG 674 (719)
Q Consensus 605 g~dvtIva~G~~v~~al~Aa~~L~~~Gi~v~VId~~~l~pld~~~~~~~~sv~~~~~~~vvvvE~~~~~G 674 (719)
..|++||++|+++..|++|++.|+++|+++.||++++++|||.+.+. +.+.++ .+.|+|+|.+...|
T Consensus 10 dAd~viV~~Gs~~~~a~~A~~~L~~~Gi~vgvi~~r~lrPf~~~~l~--~~l~k~-~k~V~Vle~~~~~G 76 (157)
T d2c42a3 10 DAERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFF--AALPAS-AKVITVLDRTKEPG 76 (157)
T ss_dssp TCSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEEESEEESCCHHHHH--HTSCTT-CCEEEEEESSCCTT
T ss_pred CCCEEEEEeCHhHHHHHHHHHHHHhhcccccEEEeEEEEeCCHHHHH--HHHhcc-CCEEEEEeCCcCCC
Confidence 57999999999999999999999999999999999999999988653 334344 34456667766555
|
| >d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=9.5e-08 Score=92.35 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=68.6
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcc
Q 005021 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISID 275 (719)
Q Consensus 196 ~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis 275 (719)
..-|.+|.+++.|+|+|+|.+... .+.+|||++|||++ .+....|..|.+++++-++||+|||+|.+.
T Consensus 50 ~~~g~mG~~l~~aiG~alaa~~~~----------p~~~Vv~i~GDGsf--~m~~~eL~ta~~~~l~i~~iV~nN~~y~~~ 117 (196)
T d1pvda3 50 VLWGSIGFTTGATLGAAFAAEEID----------PKKRVILFIGDGSL--QLTVQEISTMIRWGLKPYLFVLNNDGYTIE 117 (196)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHHC----------TTCCEEEEEEHHHH--HHHGGGHHHHHHTTCCCEEEEEESSSCHHH
T ss_pred CCcCcccccccchhHHHHHHHhcC----------CCCceeeccCcccc--ccccccccccccccccceEEEEeCCcccee
Confidence 345889999999999999998764 36789999999998 445567889999999888899999998753
Q ss_pred cchh-------hhcchhHHHHHhccC---ceEEEE
Q 005021 276 GDTE-------IAFTENVDKRFEGLG---WHVIWV 300 (719)
Q Consensus 276 ~~~~-------~~~~~~~~~~~~a~G---~~~~~v 300 (719)
.... .....+..+..++|| |.+.+|
T Consensus 118 ~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~v 152 (196)
T d1pvda3 118 KLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRV 152 (196)
T ss_dssp HTTSCTTCGGGCCCCCCGGGHHHHTTCSSEEEEEE
T ss_pred EeeccCccccccCCCCCHHHHHHHhCCCCceEEEe
Confidence 2211 011235566667776 554444
|
| >d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=98.32 E-value=1.7e-07 Score=92.70 Aligned_cols=88 Identities=13% Similarity=0.116 Sum_probs=68.6
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.||+.|+|.++|.. +..|||++|||+++ +....|..|.+++|+-++||+||++|.+-.
T Consensus 50 ~~g~mG~~lp~aiGa~~a~p--------------~~~vv~i~GDGsf~--m~~~eL~ta~~~~lpi~iiV~nN~~~~~i~ 113 (229)
T d2djia3 50 LFATMGIAIPGGLGAKNTYP--------------DRQVWNIIGDGAFS--MTYPDVVTNVRYNMPVINVVFSNTEYAFIK 113 (229)
T ss_dssp SSCCTTCHHHHHHHHHHHCT--------------TSCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSBCTHHH
T ss_pred Ccccccccchhhhhhhhhcc--------------cccccccccccccc--cccchhhhhhcccCCceEEEeCCchhhhhh
Confidence 35779999999999999842 56799999999994 555679999999999888899998887532
Q ss_pred chhh----------hcchhHHHHHhccCceEEEE
Q 005021 277 DTEI----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~~----------~~~~~~~~~~~a~G~~~~~v 300 (719)
.... ....+..+..++||++.++|
T Consensus 114 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 147 (229)
T d2djia3 114 NKYEDTNKNLFGVDFTDVDYAKIAEAQGAKGFTV 147 (229)
T ss_dssp HHHHHHCSCCCSCBCCCCCHHHHHHHTTSEEEEE
T ss_pred HHHHhhcCCCCcCcCCCCChhhhhhccCccEEEE
Confidence 2210 12346788889999998877
|
| >d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=98.32 E-value=1.5e-07 Score=89.89 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=67.3
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.+++.|+|.++|.. +..|+|++|||+++ +....+..|.+++|+.+++|+|||+|.+-.
T Consensus 58 ~~g~mG~~~p~AiGa~la~p--------------~~~vv~i~GDG~f~--~~~~el~ta~~~~lpv~~iV~nN~~~g~~~ 121 (183)
T d1q6za3 58 AAGGLGFALPAAIGVQLAEP--------------ERQVIAVIGDGSAN--YSISALWTAAQYNIPTIFVIMNNGTYGALR 121 (183)
T ss_dssp TTCCTTSHHHHHHHHHHHCT--------------TSCEEEEEEHHHHT--TTGGGHHHHHHHTCCCEEEEEECSBCHHHH
T ss_pred cCCCcccchhHHHhhhhhcc--------------ccceEEeccccccc--cccHHHHHHHHhCCCEEEEEEeccccchhh
Confidence 34779999999999999842 56799999999986 445568889999998788899999887522
Q ss_pred chh----------h-hcchhHHHHHhccCceEEEE
Q 005021 277 DTE----------I-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~----------~-~~~~~~~~~~~a~G~~~~~v 300 (719)
... . ....+..+..++||++..+|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 156 (183)
T d1q6za3 122 WFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKA 156 (183)
T ss_dssp HHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEE
T ss_pred hhhhcccccCcccccCCCccHHHHHHHcCCEEEEE
Confidence 111 0 11246788899999988876
|
| >d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.27 E-value=2.6e-07 Score=88.88 Aligned_cols=88 Identities=18% Similarity=0.125 Sum_probs=68.2
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.+++.|+|+++|.+ +..|+|++|||++.-.. ..+..+.+++++.+++|+|||++.+..
T Consensus 52 ~~g~mG~~l~~aiGa~la~p--------------~~~vi~i~GDG~f~~~~--~el~t~~~~~l~~~iiv~nN~~~~~~~ 115 (192)
T d1ozha3 52 GQQTMGVALPWAIGAWLVNP--------------ERKVVSVSGDGGFLQSS--MELETAVRLKANVLHLIWVDNGYNMVA 115 (192)
T ss_dssp TTCCTTCHHHHHHHHHHHST--------------TSEEEEEEEHHHHHHHT--THHHHHHHHTCCEEEEEEECSBCHHHH
T ss_pred ccccccccccchhHHHhhcc--------------cccceeecccccccchh--hhHHHHhhhcCceeEEEEcCCCccccc
Confidence 35678999999999998843 57899999999996543 446677889999999999999998653
Q ss_pred chhh----------hcchhHHHHHhccCceEEEE
Q 005021 277 DTEI----------AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~~----------~~~~~~~~~~~a~G~~~~~v 300 (719)
.... ....+..+..++||++.++|
T Consensus 116 ~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v 149 (192)
T d1ozha3 116 IQEEKKYQRLSGVEFGPMDFKAYAESFGAKGFAV 149 (192)
T ss_dssp HHHHHHHSSCCSCBCCCCCHHHHHHTTTSEEEEC
T ss_pred cccccccCccccCcCCCCCHHHHHHHhccccEEe
Confidence 3211 11347888999999988775
|
| >d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.18 E-value=6.3e-07 Score=86.58 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=65.7
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|.+|.|++.|+|.++|.. +..|||++|||+++ +....+..+.+++|+-+++|+|||.+.+-..
T Consensus 61 ~g~mG~~lp~aiGa~~a~p--------------~~~Vv~i~GDGsf~--~~~~el~t~~~~~lpi~ivV~NN~~~g~i~~ 124 (198)
T d2ihta3 61 CSSFGYGIPAAIGAQMARP--------------DQPTFLIAGDGGFH--SNSSDLETIARLNLPIVTVVVNNDTNGLIEL 124 (198)
T ss_dssp SCCTTCHHHHHHHHHHHST--------------TSCEEEEEEHHHHH--HTGGGHHHHHHHTCCCEEEEEECSBCHHHHH
T ss_pred cccchhHHHHHHHHhhhhc--------------ccceEeeccccccc--ccchhhhhhhhhhhhhhHHHhhccccceEee
Confidence 4678999999999998742 56799999999985 4456688899999987888888888864221
Q ss_pred hh-----------h-hcchhHHHHHhccCceEEEE
Q 005021 278 TE-----------I-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~~-----------~-~~~~~~~~~~~a~G~~~~~v 300 (719)
.. . ....+..+..++||++.++|
T Consensus 125 ~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 159 (198)
T d2ihta3 125 YQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRA 159 (198)
T ss_dssp HHHHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEEC
T ss_pred eeccccccccccccccCCcchhhhccccCceEEEe
Confidence 10 0 11346788899999988765
|
| >d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=98.16 E-value=4.4e-07 Score=87.60 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=53.7
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcc
Q 005021 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISID 275 (719)
Q Consensus 196 ~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis 275 (719)
...|++|.+++.|+|.++|.. +.+|||++|||+++- ....|..|.+++|+-+++|+|||+|.+.
T Consensus 50 ~~~g~mG~~l~~aiGa~la~p--------------~~~vv~i~GDG~f~~--~~~eL~ta~~~~l~i~iiV~nN~~~~~~ 113 (196)
T d1ovma3 50 PLWGSIGYTLAAAFGAQTACP--------------NRRVIVLTGDGAAQL--TIQELGSMLRDKQHPIILVLNNEGYTVE 113 (196)
T ss_dssp TTTCCTTHHHHHHHHHHHHCT--------------TSCEEEEEEHHHHHH--HTTHHHHHHHTTCCCEEEEEESSSCHHH
T ss_pred CCCccccccchhhHHHHHhhh--------------ccceeccccccccee--ecccccccccccccceEEEEecCccccc
Confidence 345789999999999999842 567999999999964 5678999999999888888888888763
|
| >d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=98.07 E-value=1.4e-06 Score=84.36 Aligned_cols=63 Identities=19% Similarity=0.335 Sum_probs=53.5
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCc
Q 005021 196 VTTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISI 274 (719)
Q Consensus 196 ~~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~si 274 (719)
...|.+|.+++.|+|.++|.. ++.|+|++|||+++ +....|..|.+++|+-++||+||++|.+
T Consensus 48 ~~~g~mG~~l~aAiGa~la~p--------------~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpi~iiV~NN~~~g~ 110 (204)
T d1zpda3 48 MQWGHIGWSVPAAFGYAVGAP--------------ERRNILMVGDGSFQ--LTAQEVAQMVRLKLPVIIFLINNYGYTI 110 (204)
T ss_dssp TTTCCTTTHHHHHHHHHHHCT--------------TSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSCHH
T ss_pred CCCcccchhhHHHHHHHHhCC--------------CCceecccccccee--eeecccchhhhcccccceEEEecccccc
Confidence 345789999999999999842 67899999999996 5677889999999987888888888875
|
| >d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=98.05 E-value=1.3e-06 Score=86.10 Aligned_cols=88 Identities=14% Similarity=0.200 Sum_probs=65.8
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|++|.|++.|+|.++|.. +..|||++|||+++ +....|..|.+++|+=++||+||++|..-.
T Consensus 53 ~~g~mG~glpaAiGa~la~p--------------~~~Vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~vV~NN~~yg~i~ 116 (228)
T d2ez9a3 53 LFATMGVGIPGAIAAKLNYP--------------ERQVFNLAGDGGAS--MTMQDLATQVQYHLPVINVVFTNCQYGWIK 116 (228)
T ss_dssp SSCCTTCHHHHHHHHHHHCT--------------TSCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSBCHHHH
T ss_pred ccccccccchhhhhhhhhhc--------------cceeEeecCCcccc--ccchhhhhhccccCceEEEEeccccchhhh
Confidence 35779999999999999842 56799999999984 445567788999998778888888886432
Q ss_pred chh----------h-hcchhHHHHHhccCceEEEE
Q 005021 277 DTE----------I-AFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~----------~-~~~~~~~~~~~a~G~~~~~v 300 (719)
... . ....+..+..++||.+..+|
T Consensus 117 ~~q~~~~~~~~~~~~l~~~d~~~iA~a~G~~~~~v 151 (228)
T d2ez9a3 117 DEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRV 151 (228)
T ss_dssp HHHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEE
T ss_pred hhhhhcccCCcccccccCccHHhhccccccceEEe
Confidence 211 0 11346788889999988776
|
| >d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=97.82 E-value=6.7e-06 Score=79.77 Aligned_cols=88 Identities=19% Similarity=0.210 Sum_probs=64.3
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
..|.+|.|++.|+|.++|.. +.+|+|++|||+++-.. -.+..|.+++|+=+++|+||++|.+-.
T Consensus 50 ~~g~mG~glpaaiGa~~A~p--------------~~~Vi~i~GDGsf~m~~--~El~Ta~r~~lpi~iiV~NN~~~g~i~ 113 (208)
T d1ybha3 50 GLGAMGFGLPAAIGASVANP--------------DAIVVDIDGDGSFIMNV--QELATIRVENLPVKVLLLNNQHLGMVM 113 (208)
T ss_dssp SSCCTTCHHHHHHHHHHHCT--------------TSCEEEEEEHHHHHHTT--THHHHHHHTTCCEEEEEEECSBCHHHH
T ss_pred ccccchhhhhhHHHHHhcCC--------------CCcEEEEccCCchhhhh--hhHHHHHHhCCCEEEEEEeccccccce
Confidence 35778999999999998842 66899999999986442 336688899998777888888886422
Q ss_pred chh-------------------hhcchhHHHHHhccCceEEEE
Q 005021 277 DTE-------------------IAFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~-------------------~~~~~~~~~~~~a~G~~~~~v 300 (719)
... .....+..+..++||+...+|
T Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~~~~pd~~~iA~a~G~~~~~v 156 (208)
T d1ybha3 114 QWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARV 156 (208)
T ss_dssp HHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEE
T ss_pred ehhhhcccccccccccccccccCCCCCCHHHhhccCCceEEEc
Confidence 110 011236778889999988876
|
| >d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.77 E-value=9.1e-06 Score=79.88 Aligned_cols=88 Identities=19% Similarity=0.194 Sum_probs=65.9
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCccc
Q 005021 197 TTGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDG 276 (719)
Q Consensus 197 ~tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~ 276 (719)
.-|..|.|++.|+|.++|.. +..|||++|||+++-. .--|..|.+++|+-++||+||++|....
T Consensus 61 ~~g~mG~~~~aaiGa~lA~p--------------~r~Vv~i~GDGsf~m~--~~EL~Ta~r~~l~i~iiV~nN~~~g~~~ 124 (227)
T d1t9ba3 61 GLGTMGYGLPAAIGAQVAKP--------------ESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNEEQGMVT 124 (227)
T ss_dssp SSCCTTCHHHHHHHHHHHCT--------------TSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECSSCHHHH
T ss_pred ccccchhhHHHHHHHHhcCC--------------CCeEEEeCCCcccccc--hHHHHHHhhcCCceEEEEEecccccchh
Confidence 45778999999999999842 6789999999998544 2347788899999899999999886332
Q ss_pred chh-----------hhcchhHHHHHhccCceEEEE
Q 005021 277 DTE-----------IAFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 277 ~~~-----------~~~~~~~~~~~~a~G~~~~~v 300 (719)
... .....+..+..++||.+..+|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v 159 (227)
T d1t9ba3 125 QWQSLFYEHRYSHTHQLNPDFIKLAEAMGLKGLRV 159 (227)
T ss_dssp HHHHHHSTTCCCSCCCCCCCHHHHHHHTTCEEEEE
T ss_pred HHHhhhhccccccccCCCCCHHHHHhhcccceEee
Confidence 211 011346788888999887776
|
| >d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=97.64 E-value=3.1e-05 Score=73.30 Aligned_cols=86 Identities=16% Similarity=0.083 Sum_probs=57.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccCCCCCccCCcEEEEEEcccccChhHHHHHHHHhhhcCCCcEEEEEeCCCCCcccc
Q 005021 198 TGPLGQGMANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGIANEASSLAGHLGLGKLIAFYDDNHISIDGD 277 (719)
Q Consensus 198 tG~lG~gls~A~G~A~A~~~~~~~~~~~~~~~~~~~v~~iiGDG~~~eG~~~EAln~A~~~~L~nli~ivddN~~sis~~ 277 (719)
-|.+|.+++.|+|.+ |.. ++.|+|++|||+++-.. -.+..|.+++++-+++|+||+++..-..
T Consensus 56 ~g~mG~~l~~aig~~-a~~--------------~~~vv~i~GDGsf~~~~--~el~ta~~~~l~i~iiV~NN~g~~~~~q 118 (183)
T d2ji7a3 56 WGVMGIGMGYCVAAA-AVT--------------GKPVIAVEGDSAFGFSG--MELETICRYNLPVTVIIMNNGGIYKGNE 118 (183)
T ss_dssp TTCTTCHHHHHHHHH-HHH--------------CSCEEEEEEHHHHHTTG--GGHHHHHHTTCCEEEEEEECSBSSCSCC
T ss_pred ccccccccchhhhhh-cCC--------------cceEEEEEcCcchhhch--hhhhhhhhccccchhhhhhhhhhhhhhh
Confidence 467889998888755 321 46799999999987653 3477788999975555555554432110
Q ss_pred h----h-----hhcchhHHHHHhccCceEEEE
Q 005021 278 T----E-----IAFTENVDKRFEGLGWHVIWV 300 (719)
Q Consensus 278 ~----~-----~~~~~~~~~~~~a~G~~~~~v 300 (719)
. + .....+..+..++||++.++|
T Consensus 119 ~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v 150 (183)
T d2ji7a3 119 ADPQPGVISCTRLTRGRYDMMMEAFGGKGYVA 150 (183)
T ss_dssp CCSBTTBCCTTBCCCCCHHHHHHHTTCEEEEE
T ss_pred ccccccccccccccccchhhhhhhcCCcEEEe
Confidence 0 1 012346888889999998876
|
| >d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR Pyr module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain I species: Desulfovibrio africanus [TaxId: 873]
Probab=96.27 E-value=0.013 Score=57.69 Aligned_cols=110 Identities=12% Similarity=-0.039 Sum_probs=83.9
Q ss_pred cccccchHHHHHHHHHhcCCCCccEEEehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhhhHHcCC
Q 005021 462 FGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAM 541 (719)
Q Consensus 462 ~GIaE~~~vg~AaGlA~~G~~~~Pv~~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edia~lr~i 541 (719)
..-.|+.+++++.|.+..|. +.++.+-+.=+.++.|.|...+...+|++++.. .+.+.+...+++....|+.+.+.
T Consensus 59 ~~e~E~~A~~~~~Ga~~aG~--r~~t~ts~~Gl~~m~e~l~~a~~~~~P~V~~v~-~r~~~~~~~~~~~~q~d~~~~~~- 134 (257)
T d2c42a1 59 EMQSEAGAAGAVHGALAAGA--LTTTFTASQGLLLMIPNMYKISGELLPGVFHVT-ARAIAAHALSIFGDHQDIYAARQ- 134 (257)
T ss_dssp ECSSHHHHHHHHHHHHHTTC--CEEEEECHHHHHHHHHHHHHHHHTTCCCEEEEE-ECCCCSSSBCCSCCSHHHHTTTT-
T ss_pred EecccchhHHHHHHHHhcCC--CeEEEecchHHHHHHHHHHHHHhcCCceEEEEE-ecCCCCCCCccccchHHHHHHHh-
Confidence 34689999999999999994 889888777778899999888888999776653 33322223467777788766654
Q ss_pred CCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEc
Q 005021 542 PNILMLRPADGNETAGAYKVAVA---NRKRPSILALS 575 (719)
Q Consensus 542 Pnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~ 575 (719)
-++.++.|+|.+|+..+...|.+ +...|+++.+.
T Consensus 135 ~g~~~l~~~s~QEa~d~~~~A~~lae~~~~Pv~~~~D 171 (257)
T d2c42a1 135 TGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFD 171 (257)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred cceEEEecCCHHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 57899999999999998876652 23569998764
|
| >d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=95.62 E-value=0.018 Score=53.45 Aligned_cols=118 Identities=16% Similarity=0.114 Sum_probs=81.4
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
-+++.+ -.|++++.+|.|.|+... +|-++ +...=+..+...|.++...+.||+++....... .| .++.||.++
T Consensus 38 i~~i~~-rhE~~A~~mA~gyar~tg--k~~v~~~~~GpG~~n~~~gl~~A~~~~~Pvlvi~g~~~~~~~g-~~~~~q~~D 113 (180)
T d1q6za2 38 FRYILA-LQEACVVGIADGYAQASR--KPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIG-VEALLTNVD 113 (180)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHT--SCEEEEEEHHHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHHT-TTCTTCCTT
T ss_pred CeEEEE-ccchhHHHHHHHHhhhcc--CcceEEeccccccccccceeHhhhhcccceeeecccccccccc-ccccchhhh
Confidence 355554 689999999999998643 55443 344434455566777778899999887433322 34 356788888
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCCCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQKL 579 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~~~ 579 (719)
...+++.+-.. .+.+.+++++...++.|++ ...||++|-+|..-.
T Consensus 114 ~~~~~~~~tK~-~~~v~~~~~i~~~l~~A~~~a~~~~~GPv~l~iP~D~~ 162 (180)
T d1q6za2 114 AANLPRPLVKW-SYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDW 162 (180)
T ss_dssp GGGSSTTSCSC-EECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGGT
T ss_pred eeecccccccc-cccCCCHHHHHHHHHHHHHHHhcCCCccEEEEcChhHh
Confidence 88888887655 3567777777776666653 346899999997544
|
| >d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=94.89 E-value=0.1 Score=48.18 Aligned_cols=147 Identities=13% Similarity=0.081 Sum_probs=83.8
Q ss_pred HHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCcccccccc--chHHHHHHHHH-hcCCCCccEEEe--h
Q 005021 416 QTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVRE--HGMGAICNGIA-LHSPGLIPYCAT--F 490 (719)
Q Consensus 416 ~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE--~~~vg~AaGlA-~~G~~~~Pv~~~--y 490 (719)
-++|.++..++|+.++++ |. +..+.....+ +.. .-|.+|+..|.-- ...++.|.|.+ ..+ +|++++ -
T Consensus 12 ~~~l~~~~~~~~D~iiv~-dg-g~~~~~~~~~--~~~-~~p~~~~~~~~~g~mG~~l~~aig~~a~~~---~~vv~i~GD 83 (183)
T d2ji7a3 12 LGVVRDFMLANPDISLVN-EG-ANALDNTRMI--VDM-LKPRKRLDSGTWGVMGIGMGYCVAAAAVTG---KPVIAVEGD 83 (183)
T ss_dssp HHHHHHHHHHCCSSEEEE-ES-SHHHHHHHHH--SCC-CSTTCEEECTTTTCTTCHHHHHHHHHHHHC---SCEEEEEEH
T ss_pred HHHHHHHHhcCCCEEEEE-Cc-hhHHHHHHHH--hcc-CCCCcEEecCCccccccccchhhhhhcCCc---ceEEEEEcC
Confidence 567888888888877653 32 2222111111 222 3488998866421 12233444433 345 677754 4
Q ss_pred hhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCC-------CCC---CCCChhhhh-HHcCCCCeEEEeeCCHHHHHHHH
Q 005021 491 FVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGE-------DGP---THQPIEHLA-SFRAMPNILMLRPADGNETAGAY 559 (719)
Q Consensus 491 ~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~-------dG~---THq~~edia-~lr~iPnl~V~~P~d~~e~~~~l 559 (719)
..|+..+ .-+-..+..++|+++++.+++ ++.. .|. +-...-|.+ +.+++ |+.-+.-.+.+|++.+|
T Consensus 84 Gsf~~~~-~el~ta~~~~l~i~iiV~NN~-g~~~~~q~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al 160 (183)
T d2ji7a3 84 SAFGFSG-MELETICRYNLPVTVIIMNNG-GIYKGNEADPQPGVISCTRLTRGRYDMMMEAF-GGKGYVANTPAELKAAL 160 (183)
T ss_dssp HHHHTTG-GGHHHHHHTTCCEEEEEEECS-BSSCSCCCCSBTTBCCTTBCCCCCHHHHHHHT-TCEEEEECSHHHHHHHH
T ss_pred cchhhch-hhhhhhhhccccchhhhhhhh-hhhhhhhccccccccccccccccchhhhhhhc-CCcEEEeCCHHHHHHHH
Confidence 5665433 124445678999998887775 2221 111 000011222 22333 67778889999999999
Q ss_pred HHHHHcCCCcEEEEE
Q 005021 560 KVAVANRKRPSILAL 574 (719)
Q Consensus 560 ~~a~~~~~~P~~irl 574 (719)
+.+++ .++|++|-.
T Consensus 161 ~~a~~-~~~p~lIev 174 (183)
T d2ji7a3 161 EEAVA-SGKPCLINA 174 (183)
T ss_dssp HHHHH-HTSCEEEEE
T ss_pred HHHHh-CCCcEEEEE
Confidence 99997 599999865
|
| >d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=94.59 E-value=0.18 Score=46.47 Aligned_cols=115 Identities=8% Similarity=-0.033 Sum_probs=78.3
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCcc-EEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIP-YCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~P-v~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
=||+.+ -.|++++-+|.|.++... +| +|. +...=+..+...|.++...+.||+++....... .+. ..+|.+.
T Consensus 44 i~~i~~-r~E~~A~~~A~gyar~tg--~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~Q~~d 118 (184)
T d2djia2 44 VKFLQV-KHEEVGAMAAVMQSKFGG--NLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNM--DAFQELN 118 (184)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHTTC--CCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEESCGGGTTT--TCTTCCC
T ss_pred cEEEEe-cCCcchHHHHHhhhhccc--CcceeeccccccccchhHhHHHHHHhCccceeecccchhhHhhc--Ccccccc
Confidence 377777 789999999999997643 44 443 344444566667777777899999987433222 232 2477788
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH---cCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVA---NRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~---~~~~P~~irl~r~ 577 (719)
+..+++.+=.. .+...+++++..+++.|++ ...+|++|-+|..
T Consensus 119 ~~~~~~~itk~-~~~v~~~~~~~~~~~~A~~~a~~~rGPv~i~iP~D 164 (184)
T d2djia2 119 QNPMYDHIAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLEVPGD 164 (184)
T ss_dssp CHHHHHTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEEEETT
T ss_pred cccchhhhcce-eeccccchhhHHHHHHHHHHHhCCCCCEEEEeCch
Confidence 88899988653 4556666666666655542 1369999999875
|
| >d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=94.45 E-value=0.14 Score=47.38 Aligned_cols=116 Identities=19% Similarity=0.133 Sum_probs=78.4
Q ss_pred CCccccccccchHHHHHHHHHhc-CCCCccEEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCC-ccCCCCCCCCChh
Q 005021 457 ERNVRFGVREHGMGAICNGIALH-SPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSI-GLGEDGPTHQPIE 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~-G~~~~Pv~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~-g~g~dG~THq~~e 533 (719)
=|++.+ ..|++++-+|-|.|+. |+ ..+|. +...=+..+...|.++-..+.||+++...... ..+ .+.+||...
T Consensus 38 i~~i~~-~hE~~A~~~A~gyar~tg~--~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~-~~~~~q~~d 113 (186)
T d2ihta2 38 IDFVLT-RHEFTAGVAADVLARITGR--PQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDIF-PNDTHQCLD 113 (186)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHCS--CEEEEECTTHHHHHHHHHHHHHHHHTCCEEEEEEESCGGGCC-TTTSTTCCC
T ss_pred CEEEEE-ccchhhHHHHHHHhhccCC--cceeeccccccccchhhhhhHHHHhhccceeeeccCcchhcc-ccccccccc
Confidence 356655 7899999999999975 63 33443 34444556666666666789999998643222 222 345789899
Q ss_pred hhhHHcCCCCeEEEeeCCHHHHHHHHHHHHH----cCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNETAGAYKVAVA----NRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~~P~~irl~r~ 577 (719)
+..+++.+=.. .....+++++...++.|++ ...||++|-+|..
T Consensus 114 ~~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~a~s~~~GPv~l~iP~D 160 (186)
T d2ihta2 114 SVAIVAPMSKY-AVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVD 160 (186)
T ss_dssp HHHHHGGGSSE-EEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred cccccCCceee-ccccCCchhhhhHHHHHHHHHhcCCCeeEEEEeCHh
Confidence 99999987543 3556677776666665543 2468999999863
|
| >d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.16 E-value=0.19 Score=46.09 Aligned_cols=119 Identities=18% Similarity=0.084 Sum_probs=73.0
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh-
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE- 533 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e- 533 (719)
=|++.+ -.|++++-+|.|.++... +|+|. +...=+..+...|.++...+.||+++....... .+.+...||.+.
T Consensus 42 i~~i~~-~~E~~A~~~A~gyar~t~--~~~v~~t~GpG~~N~~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~~~~~~~~ 118 (180)
T d1pvda2 42 MRWAGN-ANELNAAYAADGYARIKG--MSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGN 118 (180)
T ss_dssp CEECCC-SCHHHHHHHHHHHHHHHS--CEEEEEETTHHHHHHHHHHHHHHHHTCCEEEEEEECCCC--------CCSCSS
T ss_pred eEEeee-cccchhhHHHHHHhhccC--CceeeeccccccchhhHHHHHHHhhcccEEEEeccCCcccccccceeeecccc
Confidence 366665 799999999999998764 67764 444444456666666667899999987433332 343444565432
Q ss_pred -----hhhHHcCCCCeE--EEeeCCH-HHHHHHHHHHHHcCCCcEEEEEcCCCC
Q 005021 534 -----HLASFRAMPNIL--MLRPADG-NETAGAYKVAVANRKRPSILALSRQKL 579 (719)
Q Consensus 534 -----dia~lr~iPnl~--V~~P~d~-~e~~~~l~~a~~~~~~P~~irl~r~~~ 579 (719)
...+++.+-... +-.|.+. +.+..+++.|.. .++|++|-+|+.-.
T Consensus 119 ~~~~~~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~-~~gPv~i~iP~dv~ 171 (180)
T d1pvda2 119 GDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYV-TQRPVYLGLPANLV 171 (180)
T ss_dssp SCSSHHHHHHGGGCSEEEECCCTTTHHHHHHHHHHHHHH-HTSCEEEEEETTTT
T ss_pred cchhHHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhC-CCCCEEEECCcccc
Confidence 124566654443 2334444 355667777765 47999999998543
|
| >d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.72 E-value=0.28 Score=44.66 Aligned_cols=115 Identities=15% Similarity=0.089 Sum_probs=75.4
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhhh
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 535 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~edi 535 (719)
|++. ...|++++-+|-|.|+.-. +|-++ +...=+..+...|.++-..+.||+++....... ......||.++..
T Consensus 44 ~~i~-~~~E~~A~~~A~gyar~tg--~~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~-~~~~~~~q~~d~~ 119 (175)
T d1t9ba2 44 NFVL-PKHEQGAGHMAEGYARASG--KPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTS-AIGTDAFQEADVV 119 (175)
T ss_dssp EEEC-CSSHHHHHHHHHHHHHHHS--SCEEEEECSTHHHHTTHHHHHHHHHHTCCEEEEEEECCTT-TTTSCCTTCCCHH
T ss_pred eEEE-ecCchhHHHHHHHHHHHhC--CceEEEEecCcHHHHHHHHHHHHHHcCCCEEEEecCCChh-hcCCCccccccHh
Confidence 5555 4899999999999998632 55443 344445566666767777899999987433322 2223347777777
Q ss_pred hHHcCCCCeEEEeeCCHHHHHH----HHHHHHHcCCCcEEEEEcCC
Q 005021 536 ASFRAMPNILMLRPADGNETAG----AYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 536 a~lr~iPnl~V~~P~d~~e~~~----~l~~a~~~~~~P~~irl~r~ 577 (719)
.+++.+=... ....+++++.. +++.|.....||++|-+|..
T Consensus 120 ~l~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~D 164 (175)
T d1t9ba2 120 GISRSCTKWN-VMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKD 164 (175)
T ss_dssp HHTGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred Hhcccceeee-EecCCHHHHHHHHHHHHHHHhcCCCccEEEEcChh
Confidence 8888775543 44555555444 45555543578999999864
|
| >d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.09 E-value=0.78 Score=43.44 Aligned_cols=155 Identities=14% Similarity=0.061 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhhCCceEEEecCCCCCccccccccccCcccCCCCCcccccccc--chHHHHHHHHHhcCCCCccEEEe-
Q 005021 413 NLSQTCLNALAKTLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVRE--HGMGAICNGIALHSPGLIPYCAT- 489 (719)
Q Consensus 413 ~a~~~~L~~l~~~dp~iv~~saDl~~s~~~~~~g~~~f~~~~~p~R~~d~GIaE--~~~vg~AaGlA~~G~~~~Pv~~~- 489 (719)
..+-+.|.+++.++.+=.++..|.+.... ... .-|.- +.|.|++..+.-= ...++.|.|.++... =+|++++
T Consensus 14 ~~~~~~L~~~~~~~~~d~ivv~D~G~~~~-~~~--~~~~~-~~p~~~i~~~~~g~mG~~~~aaiGa~lA~p-~r~Vv~i~ 88 (227)
T d1t9ba3 14 QTVIKKLSKVANDTGRHVIVTTGVGQHQM-WAA--QHWTW-RNPHTFITSGGLGTMGYGLPAAIGAQVAKP-ESLVIDID 88 (227)
T ss_dssp HHHHHHHHHHHHTTCSCEEEEECSSHHHH-HHH--HHSCC-CSTTCEECCCSSCCTTCHHHHHHHHHHHCT-TSEEEEEE
T ss_pred HHHHHHHHHhcccCCCCEEEEECCcHHHH-HHH--HHcCC-CCCceEeeecccccchhhHHHHHHHHhcCC-CCeEEEeC
Confidence 34457788888776554455667543221 111 11322 4578887643211 223334444444332 2677764
Q ss_pred -hhhhHHhHHHHHHHHhhhcCCEEEEEecCC-Ccc---------CC-CCCCCCChhhh-hHHcCCCCeEEEeeCCHHHHH
Q 005021 490 -FFVFTDYMRAAIRISALCEAGVIYVMTHDS-IGL---------GE-DGPTHQPIEHL-ASFRAMPNILMLRPADGNETA 556 (719)
Q Consensus 490 -y~~F~~ra~dqir~~a~~~~pV~~v~~~~g-~g~---------g~-dG~THq~~edi-a~lr~iPnl~V~~P~d~~e~~ 556 (719)
-..|+..+-+ |-..+..++|+++++..++ ++. +. ...+....=|. .+.+++ |+.-+.-.+.+|+.
T Consensus 89 GDGsf~m~~~E-L~Ta~r~~l~i~iiV~nN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~~~el~ 166 (227)
T d1t9ba3 89 GDASFNMTLTE-LSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAM-GLKGLRVKKQEELD 166 (227)
T ss_dssp EHHHHHHHGGG-HHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHT-TCEEEEECSHHHHH
T ss_pred CCcccccchHH-HHHHhhcCCceEEEEEecccccchhHHHhhhhccccccccCCCCCHHHHHhhc-ccceEeeCCHHHHH
Confidence 4555443311 4455677899777775554 321 11 11122221121 233333 56667779999999
Q ss_pred HHHHHHHHcCCCcEEEEEc
Q 005021 557 GAYKVAVANRKRPSILALS 575 (719)
Q Consensus 557 ~~l~~a~~~~~~P~~irl~ 575 (719)
.+|+.++. .++|++|-..
T Consensus 167 ~al~~a~~-~~~p~lieV~ 184 (227)
T d1t9ba3 167 AKLKEFVS-TKGPVLLEVE 184 (227)
T ss_dssp HHHHHHHH-CSSCEEEEEE
T ss_pred HHHHHHHH-CCCCEEEEEE
Confidence 99999997 6999999763
|
| >d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=91.98 E-value=0.19 Score=46.21 Aligned_cols=116 Identities=11% Similarity=0.052 Sum_probs=74.5
Q ss_pred CCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCccCCCCCCCCChhh
Q 005021 457 ERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEH 534 (719)
Q Consensus 457 ~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g~g~dG~THq~~ed 534 (719)
=|++.+ ..|++++-+|-|.|+.-. +|-++ +...=+..+...|.++-..+.||+++....... ...-..||.+.+
T Consensus 43 i~~i~~-~hE~~A~~~A~gyar~tg--~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~isg~~~~~-~~~~~~~q~~d~ 118 (181)
T d1ozha2 43 IRIIPV-RHEANAAFMAAAVGRITG--KAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRA-DKAKQVHQSMDT 118 (181)
T ss_dssp SEEEEC-SSHHHHHHHHHHHHHHHS--SCEEEEECSTHHHHTTHHHHHHHHHHTCCEEEEEEECCTT-TC------CCCH
T ss_pred cccccc-cccHHHHHHHHHHHHhcC--CccceeeccchhhhhhhhhHHHHhhcCCceeeeecccchh-hccccccccccc
Confidence 455554 789999999999998632 45443 455555566677777777899999887433222 112245888888
Q ss_pred hhHHcCCCCeEEEeeCCHHHHHHHHHHH----HHcCCCcEEEEEcCC
Q 005021 535 LASFRAMPNILMLRPADGNETAGAYKVA----VANRKRPSILALSRQ 577 (719)
Q Consensus 535 ia~lr~iPnl~V~~P~d~~e~~~~l~~a----~~~~~~P~~irl~r~ 577 (719)
..+++.+-... +...+++++..+++.| .....||++|-+|+.
T Consensus 119 ~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (181)
T d1ozha2 119 VAMFSPVTKYA-IEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 164 (181)
T ss_dssp HHHHGGGCSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred cccccccchhe-eccCchhHHHHHHHHHHHHHhhCCCccEEEEcChH
Confidence 99999887654 4455666655555555 433568999999873
|
| >d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=91.87 E-value=0.42 Score=43.90 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=73.7
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCCh---
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI--- 532 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~--- 532 (719)
|++.+ ..|++++-+|-|.|+.-. +|.|. +...=+..+...|.++...+.||+++....... .+.+...||.+
T Consensus 42 ~~v~~-rhE~~A~~mA~gyar~tg--~~~v~~t~GpG~~N~~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~ 118 (186)
T d1zpda2 42 EQVYC-CNELNCGFSAEGYARAKG--AAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKT 118 (186)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS--CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred eEeee-ccccceehhhhhhhhccc--cceeEeeccccchhhhhhhhhhhhcccceEEEecccCcccccCCCcceeecCCc
Confidence 55555 899999999999998643 66554 444444456666666667899999986432222 34333445433
Q ss_pred ---hhhhHHcCCCCe--EEEeeCCHH-HHHHHHHHHHHcCCCcEEEEEcCC
Q 005021 533 ---EHLASFRAMPNI--LMLRPADGN-ETAGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 533 ---edia~lr~iPnl--~V~~P~d~~-e~~~~l~~a~~~~~~P~~irl~r~ 577 (719)
.++.+++.+-.. +|-.|.+.. .++.+++.|... .+|++|-+|+.
T Consensus 119 ~~~~~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~-~~PV~l~iP~D 168 (186)
T d1zpda2 119 DYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALRE-KKPVYLEIACN 168 (186)
T ss_dssp CCCHHHHHHGGGCSCEEEECSGGGHHHHHHHHHHHHHHH-TCCEEEEEETT
T ss_pred chhhhhhccCCceeeeeEcCCHHHHHHHHHHHHHHHhhC-CCCEEEECCcc
Confidence 235778866543 444455443 455666666654 57999999874
|
| >d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=90.06 E-value=0.39 Score=44.22 Aligned_cols=118 Identities=12% Similarity=0.005 Sum_probs=74.7
Q ss_pred CCCccccccccchHHHHHHHHHhcCCCCccEEE--ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCCh
Q 005021 456 EERNVRFGVREHGMGAICNGIALHSPGLIPYCA--TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI 532 (719)
Q Consensus 456 p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~--~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ 532 (719)
+-+++.+ -.|++++-+|.|.|+... +|-++ +...=+..+...|.++-..+.||+++.....-. .+..-..||.+
T Consensus 41 ~i~~i~~-~hE~~A~~~A~gyar~tg--~~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~q~~ 117 (188)
T d2ji7a2 41 GQRFYSF-RHEQHAGYAASIAGYIEG--KPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEM 117 (188)
T ss_dssp TCEEEEC-SSHHHHHHHHHHHHHHHS--SCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCC
T ss_pred CCEEEEe-cccchhhhHHHHHHhhhc--ccceeeccccccccccchhHHHHHHhcccceEEeccCchhhhccccccccee
Confidence 4566665 689999999999998542 55443 343434455555666667899999887322111 12222357778
Q ss_pred hhhhHHcCCCCeEEEeeCCHHHH----HHHHHHHHHcCCCcEEEEEcCC
Q 005021 533 EHLASFRAMPNILMLRPADGNET----AGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 533 edia~lr~iPnl~V~~P~d~~e~----~~~l~~a~~~~~~P~~irl~r~ 577 (719)
+...+++.+=... +...+++++ ..+++.|+....||++|-+|..
T Consensus 118 d~~~~~~~~tk~~-~~v~~~~~i~~~~~~A~~~a~~~~~GPV~l~iP~d 165 (188)
T d2ji7a2 118 DQMNVARPHCKAS-FRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAK 165 (188)
T ss_dssp CHHHHTGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred eeecccCCcchhh-hccccccccHHHHHHHHHHHhCCCCceEEEEcChh
Confidence 8888988776643 333444444 4455555544568999998864
|
| >d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=89.04 E-value=1.1 Score=40.39 Aligned_cols=112 Identities=8% Similarity=-0.000 Sum_probs=72.3
Q ss_pred CccccccccchHHHHHHHHHhc-CCCCcc-EEEe-hhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCChh
Q 005021 458 RNVRFGVREHGMGAICNGIALH-SPGLIP-YCAT-FFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPIE 533 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~-G~~~~P-v~~~-y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~e 533 (719)
|++.+ ..|++++-+|.|.++. | +| +|.+ -..=+..+...|.++-..+.|++++....... .+. | .+|.+.
T Consensus 44 ~~i~~-r~E~~A~~~A~gyar~tg---k~gv~~~t~GpG~~N~~~gl~~A~~~~~P~l~i~g~~~~~~~~~-~-~~Q~~d 117 (174)
T d2ez9a2 44 HYIQV-RHEEVGAMAAAADAKLTG---KIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNM-D-TFQEMN 117 (174)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS---SCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTTTTS-C-CTTCCC
T ss_pred EEEEe-cccchhHHHHHHHHhhcC---ceeEEeecccccccchhhhHHHHHhcCccceeeeccccccccCc-c-ccccch
Confidence 55555 7899999999999975 5 55 4433 33334455566666667899999887433222 232 2 367777
Q ss_pred hhhHHcCCCCeEEEeeCCHHH----HHHHHHHHHHcCCCcEEEEEcCC
Q 005021 534 HLASFRAMPNILMLRPADGNE----TAGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 534 dia~lr~iPnl~V~~P~d~~e----~~~~l~~a~~~~~~P~~irl~r~ 577 (719)
+..+++.+=... +...++++ +..+++.|.. .+||++|-+|..
T Consensus 118 ~~~~~~~itk~~-~~v~~~~~~~~~i~~A~~~A~~-~pGPv~l~iP~D 163 (174)
T d2ez9a2 118 ENPIYADVADYN-VTAVNAATLPHVIDEAIRRAYA-HQGVAVVQIPVD 163 (174)
T ss_dssp CHHHHTTTCSEE-EECCCSTTHHHHHHHHHHHHHH-HTSEEEEEEETT
T ss_pred hhhhhccccccc-cccccHHHHHHHHHHHHHHHhC-CCCCEEEEeCcc
Confidence 788888876643 23334433 4455666664 479999999874
|
| >d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=86.19 E-value=2 Score=38.84 Aligned_cols=117 Identities=14% Similarity=0.095 Sum_probs=63.4
Q ss_pred CCCCCcccccccc-chHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCC-CccC------
Q 005021 454 TPEERNVRFGVRE-HGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDS-IGLG------ 523 (719)
Q Consensus 454 ~~p~R~~d~GIaE-~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g-~g~g------ 523 (719)
..|.+++..+-.= ...++.|.|.++.-. =+|++++ -..|.....+ +...+..++|+++++..++ ++..
T Consensus 49 ~~~~~~~~~~~g~mG~~~p~AiGa~la~p-~~~vv~i~GDG~f~~~~~e-l~ta~~~~lpv~~iV~nN~~~g~~~~~~~~ 126 (183)
T d1q6za3 49 RNPGSYYFCAAGGLGFALPAAIGVQLAEP-ERQVIAVIGDGSANYSISA-LWTAAQYNIPTIFVIMNNGTYGALRWFAGV 126 (183)
T ss_dssp CSSSCEEECTTCCTTSHHHHHHHHHHHCT-TSCEEEEEEHHHHTTTGGG-HHHHHHHTCCCEEEEEECSBCHHHHHHHHH
T ss_pred ccccccccccCCCcccchhHHHhhhhhcc-ccceEEeccccccccccHH-HHHHHHhCCCEEEEEEeccccchhhhhhhc
Confidence 4577777654211 234455656554321 2677765 3555433222 4445667899886654443 3310
Q ss_pred CCCCCC----CChhhh-hHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 524 EDGPTH----QPIEHL-ASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 524 ~dG~TH----q~~edi-a~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
..+..+ .+.-|. .+.+++ |+..+...+.+|+..+++.+++ .++|++|-.
T Consensus 127 ~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~gp~lieV 180 (183)
T d1q6za3 127 LEAENVPGLDVPGIDFRALAKGY-GVQALKADNLEQLKGSLQEALS-AKGPVLIEV 180 (183)
T ss_dssp HTCCSCCSCBCCCCCHHHHHHHH-TCEEEEESSHHHHHHHHHHHHT-CSSCEEEEE
T ss_pred ccccCcccccCCCccHHHHHHHc-CCEEEEECCHHHHHHHHHHHHh-CCCcEEEEE
Confidence 011111 111121 222222 4566777899999999999996 699998853
|
| >d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=85.59 E-value=1.9 Score=39.51 Aligned_cols=117 Identities=14% Similarity=0.069 Sum_probs=75.2
Q ss_pred CCCccccccccchHHHHHHHHHhcCCCCccEE--EehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCCCCCh
Q 005021 456 EERNVRFGVREHGMGAICNGIALHSPGLIPYC--ATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPTHQPI 532 (719)
Q Consensus 456 p~R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~--~~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~THq~~ 532 (719)
++-.+-....|++++-+|-|.|+.-. +|-+ .+...=+..+...|.++-..+.||+++....... .+. ..+|..
T Consensus 49 ~~i~~i~~rhE~~A~~mAdgyar~tg--~~gv~~~t~GpG~~N~~~gl~~A~~~~~Pvlvi~g~~~~~~~~~--~~~q~~ 124 (195)
T d1ybha2 49 SSIRNVLPRHEQGGVFAAEGYARSSG--KPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQET 124 (195)
T ss_dssp SSCEECCCSSHHHHHHHHHHHHHHHS--SCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTTT--TCTTCC
T ss_pred cceeecccccHHHHHHHHHHHHHHHC--CCeEEEEecChHHHHHHHHHHHHHHcCCCEEEEecCCcHHHhcc--Cccccc
Confidence 43333455899999999999997632 5544 3455555566677777777899999987433322 232 246777
Q ss_pred hhhhHHcCCCCeEEEeeCCHHHHHHHHHHH----HHcCCCcEEEEEcCC
Q 005021 533 EHLASFRAMPNILMLRPADGNETAGAYKVA----VANRKRPSILALSRQ 577 (719)
Q Consensus 533 edia~lr~iPnl~V~~P~d~~e~~~~l~~a----~~~~~~P~~irl~r~ 577 (719)
....+++.+=.. .....+++++...++.| .....||++|-+|..
T Consensus 125 d~~~~~~~~tk~-~~~v~~~~~~~~~~~~A~~~a~~~r~GPV~l~iP~D 172 (195)
T d1ybha2 125 PIVEVTRSITKH-NYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (195)
T ss_dssp CHHHHHGGGSSE-EEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred chhhhhcccccc-hhhcchHhhcchHHHHHHHHHhcCCCCcEEEECChH
Confidence 777888866543 24455555555555544 433578999998863
|
| >d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=85.52 E-value=2.8 Score=38.19 Aligned_cols=116 Identities=10% Similarity=0.053 Sum_probs=65.6
Q ss_pred CCCCcccccc--ccchHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCC-CccC------
Q 005021 455 PEERNVRFGV--REHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDS-IGLG------ 523 (719)
Q Consensus 455 ~p~R~~d~GI--aE~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g-~g~g------ 523 (719)
-|.||+..+. +=...+++|.|.++.-. =++++++ -..|+.-. ..+-.....++|+++++-.++ ++..
T Consensus 43 ~p~~~~~~~~~g~mG~~l~~aiGa~la~p-~~~vi~i~GDG~f~~~~-~el~t~~~~~l~~~iiv~nN~~~~~~~~~~~~ 120 (192)
T d1ozha3 43 RARQVMISNGQQTMGVALPWAIGAWLVNP-ERKVVSVSGDGGFLQSS-MELETAVRLKANVLHLIWVDNGYNMVAIQEEK 120 (192)
T ss_dssp CCSEEECCCTTCCTTCHHHHHHHHHHHST-TSEEEEEEEHHHHHHHT-THHHHHHHHTCCEEEEEEECSBCHHHHHHHHH
T ss_pred CCceeecccccccccccccchhHHHhhcc-cccceeecccccccchh-hhHHHHhhhcCceeEEEEcCCCcccccccccc
Confidence 4777776432 11234556666655432 2666654 45554322 124444566888777764443 3210
Q ss_pred ---C-CCCCCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 524 ---E-DGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 524 ---~-dG~THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
. .|...+.+ |..-+..-=|+.-+...+.+|++.+++.|++ .++|++|-.
T Consensus 121 ~~~~~~~~~~~~~-d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-~~gp~lIeV 173 (192)
T d1ozha3 121 KYQRLSGVEFGPM-DFKAYAESFGAKGFAVESAEALEPTLRAAMD-VDGPAVVAI 173 (192)
T ss_dssp HHSSCCSCBCCCC-CHHHHHHTTTSEEEECCSGGGHHHHHHHHHH-SSSCEEEEE
T ss_pred ccCccccCcCCCC-CHHHHHHHhccccEEeCCHHHHHHHHHHHHH-cCCcEEEEE
Confidence 0 11111222 3333333336788889999999999999996 699999955
|
| >d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=85.43 E-value=1.1 Score=40.44 Aligned_cols=116 Identities=14% Similarity=0.005 Sum_probs=68.0
Q ss_pred CccccccccchHHHHHHHHHhcCCCCccEEE-ehhhhHHhHHHHHHHHhhhcCCEEEEEecCCCc-cCCCCCC-C-----
Q 005021 458 RNVRFGVREHGMGAICNGIALHSPGLIPYCA-TFFVFTDYMRAAIRISALCEAGVIYVMTHDSIG-LGEDGPT-H----- 529 (719)
Q Consensus 458 R~~d~GIaE~~~vg~AaGlA~~G~~~~Pv~~-~y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~g-~g~dG~T-H----- 529 (719)
+++.+ -.|++++-+|.|.|+... +|.|. +...=+..+...|-++...+.||+++....... .+.+... |
T Consensus 43 ~~i~~-rhE~~A~~~A~gyar~t~--~~~v~~t~GpG~~n~~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~ 119 (178)
T d1ovma2 43 CWVGC-ANELNASYAADGYARCKG--FAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDG 119 (178)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS--CEEEEEETTHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSS
T ss_pred EEEEe-ccchhhHHHHHHHHhcCC--CceEEeeccccccccchhhhHHHhcCccEEEEecCCCchhhccccccccccccc
Confidence 44543 689999999999998764 77664 444434455566666777899999986322111 1211111 2
Q ss_pred CChhhhhHHcCCCCeEEEe--eCCHHHHHHHHHHHHHcCCCcEEEEEcCC
Q 005021 530 QPIEHLASFRAMPNILMLR--PADGNETAGAYKVAVANRKRPSILALSRQ 577 (719)
Q Consensus 530 q~~edia~lr~iPnl~V~~--P~d~~e~~~~l~~a~~~~~~P~~irl~r~ 577 (719)
+..+...+++.+....... |.+..++...+..++. ..+|++|-+|..
T Consensus 120 ~~~~~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~a~~-~~~Pv~i~iP~D 168 (178)
T d1ovma2 120 EFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLR-ERRPGYLMLPAD 168 (178)
T ss_dssp CCSHHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHH-HTCCEEEEEEHH
T ss_pred hhhhccccccccceeEEEeCcHHHHHHHHHHHHHHHh-CCCCEEEEEChH
Confidence 1123346677766654332 3333344444444554 478999988763
|
| >d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=83.63 E-value=5.5 Score=36.15 Aligned_cols=116 Identities=9% Similarity=0.000 Sum_probs=64.2
Q ss_pred CCCcccccccc--chHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCC-Ccc-----CCC
Q 005021 456 EERNVRFGVRE--HGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDS-IGL-----GED 525 (719)
Q Consensus 456 p~R~~d~GIaE--~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g-~g~-----g~d 525 (719)
+.+++..+..- ...++.|.|.++... =++++++ -..|+.. ..-+......++|+++++..++ ++. +.+
T Consensus 43 ~~~~~~~~~~g~mG~~l~~aiGa~la~p-~~~vv~i~GDG~f~~~-~~eL~ta~~~~l~i~iiV~nN~~~~~~~~~~~~~ 120 (196)
T d1ovma3 43 DVNFIVQPLWGSIGYTLAAAFGAQTACP-NRRVIVLTGDGAAQLT-IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAE 120 (196)
T ss_dssp SCEEECCTTTCCTTHHHHHHHHHHHHCT-TSCEEEEEEHHHHHHH-TTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTT
T ss_pred CCeEEeCCCCccccccchhhHHHHHhhh-ccceecccccccceee-cccccccccccccceEEEEecCccccchhhhccc
Confidence 44566544322 355666777666532 2555554 4556532 2235555667899877775554 321 111
Q ss_pred C---CCCC-ChhhhhHHcCC-CCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 526 G---PTHQ-PIEHLASFRAM-PNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 526 G---~THq-~~edia~lr~i-Pnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
. .++. ....++-...+ .+...+.-.+..|+..+|+.+++ .++|++|-.
T Consensus 121 ~~~~~~~~~~~~~~a~~~g~~~~~~~~~v~~~~el~~al~~a~~-~~gp~lIev 173 (196)
T d1ovma3 121 QRYNDIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAH-HERLSLIEV 173 (196)
T ss_dssp CGGGCCCCCCGGGSTTTSCSSCCEEEEEECBHHHHHHHHHHHTT-CSSEEEEEE
T ss_pred cccccccccccchhHHhcCccccceeEEEecHHHHHHHHHHHHH-CCCcEEEEE
Confidence 1 1111 11122222222 23466777899999999999995 699999854
|
| >d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=83.57 E-value=5.8 Score=37.01 Aligned_cols=118 Identities=11% Similarity=-0.071 Sum_probs=63.1
Q ss_pred CCCCCcccccccc--chHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCC-Ccc------
Q 005021 454 TPEERNVRFGVRE--HGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDS-IGL------ 522 (719)
Q Consensus 454 ~~p~R~~d~GIaE--~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g-~g~------ 522 (719)
+.|.||+..+.-= ...+..|.|.++... =++++++ -..|..-. .-+-.....++|+++++..++ ++.
T Consensus 40 ~~~~~~~~s~~~g~mG~~lp~aiGa~~a~p-~~~vv~i~GDGsf~m~~-~eL~ta~~~~lpi~iiV~nN~~~~~i~~~~~ 117 (229)
T d2djia3 40 TPKNMWRTSPLFATMGIAIPGGLGAKNTYP-DRQVWNIIGDGAFSMTY-PDVVTNVRYNMPVINVVFSNTEYAFIKNKYE 117 (229)
T ss_dssp CTTSEEECCCSSCCTTCHHHHHHHHHHHCT-TSCEEEEEEHHHHHHHG-GGHHHHHHTTCCCEEEEEECSBCTHHHHHHH
T ss_pred CCCCeEEecCCcccccccchhhhhhhhhcc-ccccccccccccccccc-chhhhhhcccCCceEEEeCCchhhhhhHHHH
Confidence 4588888765311 122344444444321 2677665 35553322 124445567899877765544 321
Q ss_pred CCCCCCC---CChhhhh-HHcCCCCeEEEeeCCHHHHHHHHHHHHH--cCCCcEEEEE
Q 005021 523 GEDGPTH---QPIEHLA-SFRAMPNILMLRPADGNETAGAYKVAVA--NRKRPSILAL 574 (719)
Q Consensus 523 g~dG~TH---q~~edia-~lr~iPnl~V~~P~d~~e~~~~l~~a~~--~~~~P~~irl 574 (719)
..++... ...-|.+ +-+++ |+.-+...+.+|+..+++.|+. ..++|++|-.
T Consensus 118 ~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~A~~~~~~~~p~lIev 174 (229)
T d2djia3 118 DTNKNLFGVDFTDVDYAKIAEAQ-GAKGFTVSRIEDMDRVMAEAVAANKAGHTVVIDC 174 (229)
T ss_dssp HHCSCCCSCBCCCCCHHHHHHHT-TSEEEEECBHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hhcCCCCcCcCCCCChhhhhhcc-CccEEEEecHHHhHHHHHHHHHhcCCCCeEEEEE
Confidence 0111111 0111222 22233 6677788899999999998873 2468988854
|
| >d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=83.31 E-value=3.1 Score=38.05 Aligned_cols=118 Identities=12% Similarity=0.044 Sum_probs=66.9
Q ss_pred CCCCCccccccc--cchHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCCC-cc------
Q 005021 454 TPEERNVRFGVR--EHGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDSI-GL------ 522 (719)
Q Consensus 454 ~~p~R~~d~GIa--E~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g~-g~------ 522 (719)
..|.+|+..+-- =...++.|.|.++.-. =+|++++ -..|+... .-+-..+..++|+++++..++. +.
T Consensus 50 ~~p~~~~~~~~~g~mG~~lp~aiGa~~a~p-~~~Vv~i~GDGsf~~~~-~el~t~~~~~lpi~ivV~NN~~~g~i~~~q~ 127 (198)
T d2ihta3 50 DQPFGFLTSAGCSSFGYGIPAAIGAQMARP-DQPTFLIAGDGGFHSNS-SDLETIARLNLPIVTVVVNNDTNGLIELYQN 127 (198)
T ss_dssp CSTTSEECCSSSCCTTCHHHHHHHHHHHST-TSCEEEEEEHHHHHHTG-GGHHHHHHHTCCCEEEEEECSBCHHHHHHHH
T ss_pred CCCCeEEecCCcccchhHHHHHHHHhhhhc-ccceEeecccccccccc-hhhhhhhhhhhhhhHHHhhccccceEeeeec
Confidence 457888875431 1233556666554421 2676654 45565432 2244456678998877766543 21
Q ss_pred -CCCCC----CCCChhhhhHHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 523 -GEDGP----THQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 523 -g~dG~----THq~~edia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
+.++. +..+.-|.+-+..-=|+.-+.-.+.+|++.+|+.|++ .++|++|-.
T Consensus 128 ~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~~p~lIeV 183 (198)
T d2ihta3 128 IGHHRSHDPAVKFGGVDFVALAEANGVDATRATNREELLAALRKGAE-LGRPFLIEV 183 (198)
T ss_dssp HHHSSCCGGGTBCCCCCHHHHHHHTTCEEEECCSHHHHHHHHHHHHT-SSSCEEEEE
T ss_pred cccccccccccccCCcchhhhccccCceEEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00111 1111112222222225566677899999999999996 699999976
|
| >d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=80.11 E-value=1.6 Score=40.35 Aligned_cols=118 Identities=18% Similarity=0.030 Sum_probs=65.9
Q ss_pred CCCCcccccccc--chHHHHHHHHHhcCCCCccEEEe--hhhhHHhHHHHHHHHhhhcCCEEEEEecCC-Ccc---CCCC
Q 005021 455 PEERNVRFGVRE--HGMGAICNGIALHSPGLIPYCAT--FFVFTDYMRAAIRISALCEAGVIYVMTHDS-IGL---GEDG 526 (719)
Q Consensus 455 ~p~R~~d~GIaE--~~~vg~AaGlA~~G~~~~Pv~~~--y~~F~~ra~dqir~~a~~~~pV~~v~~~~g-~g~---g~dG 526 (719)
.|.|++..+.-- ...++.|.|.++.-. =++++++ -..|+.-+ .-+...+..++|+++++.+++ ++. ..++
T Consensus 40 ~~~~~~~~~~~g~mG~~l~aAiGa~la~p-~~~vv~i~GDGsf~m~~-~eL~Ta~~~~lpi~iiV~NN~~~g~~~~~~~~ 117 (204)
T d1zpda3 40 NGARVEYEMQWGHIGWSVPAAFGYAVGAP-ERRNILMVGDGSFQLTA-QEVAQMVRLKLPVIIFLINNYGYTIEVMIHDG 117 (204)
T ss_dssp TTCEEEECTTTCCTTTHHHHHHHHHHHCT-TSEEEEEEEHHHHHHHG-GGHHHHHHTTCCCEEEEEECSSCHHHHTTSCC
T ss_pred CCCeEEcCCCCcccchhhHHHHHHHHhCC-CCceeccccccceeeee-cccchhhhcccccceEEEecccccccceeccc
Confidence 356766544321 124555666555431 2666654 45554322 224555667899877775553 331 1122
Q ss_pred ---CCCCC-hhhhh------HHcCCCCeEEEeeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 005021 527 ---PTHQP-IEHLA------SFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILAL 574 (719)
Q Consensus 527 ---~THq~-~edia------~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~~P~~irl 574 (719)
.+++. ...++ .+..-.++..+...+..|+..+++.|+.+.++|++|-.
T Consensus 118 ~~~~~~~~d~~~~~~~~~~~~~a~~~g~~~~~v~~~~el~~al~~al~~~~gp~lieV 175 (204)
T d1zpda3 118 PYNNIKNWDYAGLMEVFNGNGGYDSGAAKGLKAKTGGELAEAIKVALANTDGPTLIEC 175 (204)
T ss_dssp GGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEESBHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred cccccchhhhhhhhhhcCcchhhhccCccEEEecCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 11111 11111 11223467888899999999999999866789999854
|