Citrus Sinensis ID: 005136
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 712 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SIT7 | 697 | Pentatricopeptide repeat- | yes | no | 0.890 | 0.909 | 0.318 | 1e-117 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.880 | 0.797 | 0.342 | 1e-117 | |
| Q9FRI5 | 790 | Pentatricopeptide repeat- | no | no | 0.910 | 0.820 | 0.323 | 1e-109 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.838 | 0.764 | 0.332 | 1e-108 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.735 | 0.732 | 0.333 | 1e-103 | |
| Q9S7F4 | 825 | Putative pentatricopeptid | no | no | 0.734 | 0.633 | 0.339 | 1e-102 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.841 | 0.806 | 0.319 | 1e-101 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.755 | 0.617 | 0.327 | 1e-100 | |
| Q9SKQ4 | 597 | Pentatricopeptide repeat- | no | no | 0.75 | 0.894 | 0.348 | 1e-100 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.820 | 0.768 | 0.330 | 1e-99 |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 227/712 (31%), Positives = 381/712 (53%), Gaps = 78/712 (10%)
Query: 8 LFSINPETSFNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYL 67
L S + F +++C I S+ I R +H +IK+G E ++ RL
Sbjct: 13 LSSFTDSSPFAKLLDSC------IKSKLSAIYVRYVHASVIKSGFSNEIFIQNRL----- 61
Query: 68 GSRKSLEANEIVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISG 127
I+A + G+LE+ +++FD MP+RN +W ++++G
Sbjct: 62 --------------------------IDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTG 95
Query: 128 FMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTF 187
K G ++E+ F P ++ +W + + GF Q+ EAL F + + G NE +F
Sbjct: 96 LTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSF 155
Query: 188 SSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEK 247
+S+ AC+ +ND G+ V LI K+ F V + ++L+
Sbjct: 156 ASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALV--------------------- 194
Query: 248 RDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQM 307
D++ + G++ +A+R+FDEM +RN VSW+ +I + Q+G EA +F+ M
Sbjct: 195 ----------DMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMM 244
Query: 308 TRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIG-IEKDVFISNALIDLYSKCGE 366
+P+ + V+SA ASL A++ G VH V+K + D+ +SNA +D+Y+KC
Sbjct: 245 LESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSR 304
Query: 367 TKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGY 426
K+ R +FDS+ + +V++ SMI GY + + A+ +F M +RN VSW+A+I+GY
Sbjct: 305 IKEARFIFDSM---PIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGY 361
Query: 427 LEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPY-- 484
++ + + ++F + P +F+++L A A +A L G H ++K GF +
Sbjct: 362 TQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQS 421
Query: 485 ----DVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLF 540
D+F+G +L D Y K G +E VF +M +++ +SW M+ G A++GY E++ LF
Sbjct: 422 GEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELF 481
Query: 541 EEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSR 600
EM ++ P+ +T++ VL AC H+G V++G YF+SM + + P HYTC+VD+L R
Sbjct: 482 REMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGR 541
Query: 601 SGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLL 660
+G L EA+ I MP +PDS W SLL+ CK ++N + + + L ++ + YVLL
Sbjct: 542 AGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLL 601
Query: 661 SNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDHNPK 712
SN+YA G+W D MNVRK M ++G+ K GCSW++++ H F K +P+
Sbjct: 602 SNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPR 653
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/630 (34%), Positives = 370/630 (58%), Gaps = 3/630 (0%)
Query: 85 FDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERN 144
F + + N ++N + G A++LFD MP R SW ++S + K G ++ + +F++
Sbjct: 47 FSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQL 106
Query: 145 PFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGL 204
P ++ +SWT I G+ G +A+++ +++ G++P + T +++ + A G
Sbjct: 107 PQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGK 166
Query: 205 SVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMG 264
V I K G +VSV NSL+ + K G+ +A+ VFDRM RD+ SW ++ + +++G
Sbjct: 167 KVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVG 226
Query: 265 DLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSF-KPNTSCFSIVL 323
+ A F++M ER+ V+W+ MI+ +NQ GY A +F +M R S P+ + VL
Sbjct: 227 QMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVL 286
Query: 324 SALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVA 383
SA A+L+ L G +H+H++ G + + NALI +YS+CG + R + + KD+
Sbjct: 287 SACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLK 346
Query: 384 HVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEML 443
+ + +++ GY G M +AK +F ++ R+ V+W+A+I GY +H + +F M+
Sbjct: 347 -IEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMV 405
Query: 444 LSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIE 503
G+ PN T +++L ++S+ASL GK +HG +K G Y V + AL YAK+G+I
Sbjct: 406 GGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNIT 465
Query: 504 SSRRVFDRMP-DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFAC 562
S+ R FD + +++ +SWT M+ LA+ G+A+E++ LFE M + P+ +T + V AC
Sbjct: 466 SASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSAC 525
Query: 563 SHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNA 622
+H+GLV++G +YF+ M+ + I P HY C+VD+ R+G L EA++FI MP EPD
Sbjct: 526 THAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVT 585
Query: 623 WASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682
W SLLS C+ +KN + + A + L L E+ Y L+N+Y++ G+W +A +RK M +
Sbjct: 586 WGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKD 645
Query: 683 KGLRKSGGCSWVEVRNQVHFFFQKTDHNPK 712
++K G SW+EV+++VH F + +P+
Sbjct: 646 GRVKKEQGFSWIEVKHKVHVFGVEDGTHPE 675
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 226/698 (32%), Positives = 378/698 (54%), Gaps = 50/698 (7%)
Query: 25 LCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNG 84
LCL TS L RA+HG++I G ++ RL+ +Y S +
Sbjct: 21 LCLPLRRTSLQL---ARAVHGNIITFGFQPRAHILNRLIDVYCKSSE------------- 64
Query: 85 FDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERN 144
L A++LFD + E ++++ T ++SG+ G + + FE+
Sbjct: 65 ------------------LNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKA 106
Query: 145 P--FQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEI-NDFR 201
P ++ + + A I GF N + A+ LF K+ G KP+ TF+S+ A + +D +
Sbjct: 107 PVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEK 166
Query: 202 LGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGE----VDLARSVFDRMEKRDVVSWTVIL 257
+ K+G SV N+L+++ K + AR VFD + ++D SWT ++
Sbjct: 167 QCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMM 226
Query: 258 DVFIEMG--DLGEARRIFDEMPERNE-VSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKP 314
+++ G DLGE + + M + + V+++ MI+ Y G+ +EA + R+M +
Sbjct: 227 TGYVKNGYFDLGE--ELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIEL 284
Query: 315 NTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVF 374
+ + V+ A A+ L+ G VHA+VL+ + N+L+ LY KCG+ + R +F
Sbjct: 285 DEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIF 343
Query: 375 DSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDL 434
+ + KD+ VSWN+++ GY +G + EAK +F M ++N +SW +ISG E+ +
Sbjct: 344 EKMPAKDL---VSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEE 400
Query: 435 VFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTD 494
+F+ M G P FS + + A + + G+ H +++K+GF + G AL
Sbjct: 401 GLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALIT 460
Query: 495 TYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELT 554
YAK G +E +R+VF MP + +SW ++ L + G+ E+++++EEM K I P+ +T
Sbjct: 461 MYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRIT 520
Query: 555 ILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM 614
+L+VL ACSH+GLVD+G KYF+SME +Y I P HY ++D+L RSG+ S+AE I S+
Sbjct: 521 LLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESL 580
Query: 615 PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAM 674
PF+P + W +LLSGC+ + N ++ A L+ L EH Y+LLSN++A+ G+W +
Sbjct: 581 PFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVA 640
Query: 675 NVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDHNPK 712
VRKLM ++G++K CSW+E+ QVH F +P+
Sbjct: 641 RVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPE 678
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust.
Identities = 215/647 (33%), Positives = 358/647 (55%), Gaps = 50/647 (7%)
Query: 66 YLGSRKSLEANEIVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALI 125
Y+ + + EA + K + + V +N MI+ ++ G E A++LFD MPER+ VSW +I
Sbjct: 74 YMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMI 133
Query: 126 SGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEV 185
G++++ + ++ FE P ++V SW + G+ QNG +A +F ++ E N+V
Sbjct: 134 KGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK----NDV 189
Query: 186 TFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRM 245
+++++ A + + ++FK+ + N L+ +K ++ AR FD M
Sbjct: 190 SWNALLSAYVQNSKMEEAC----MLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM 245
Query: 246 EKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFR 305
RDVVSW I+ + + G + EAR++FDE P ++ +W+ M++ Y Q+ EEA LF
Sbjct: 246 NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFD 305
Query: 306 QMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCG 365
+M E++ NA++ Y +
Sbjct: 306 KMP---------------------------------------ERNEVSWNAMLAGYVQGE 326
Query: 366 ETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISG 425
+ + +FD + ++V+ +WN+MI GY G++ EAK LFD MPKR+ VSW+A+I+G
Sbjct: 327 RMEMAKELFDVMPCRNVS---TWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAG 383
Query: 426 YLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYD 485
Y + +F +M G N+S+FSS L A V +LE GK LHG+++K G+
Sbjct: 384 YSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETG 443
Query: 486 VFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEK 545
F+G AL Y K G IE + +F M K+ +SW M+ G + G+ + ++ FE M++
Sbjct: 444 CFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKR 503
Query: 546 TSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLS 605
+ P++ T+++VL ACSH+GLVDKG +YF +M Y + PN +HY C+VD+L R+G L
Sbjct: 504 EGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLE 563
Query: 606 EAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665
+A + + +MPFEPD+ W +LL + + N ++AE A ++ + E+ YVLLSN+YA
Sbjct: 564 DAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYA 623
Query: 666 SAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDHNPK 712
S+GRW D +R M +KG++K G SW+E++N+ H F + +P+
Sbjct: 624 SSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPE 670
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/573 (33%), Positives = 325/573 (56%), Gaps = 49/573 (8%)
Query: 149 VISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFG 208
V++W + I F +AL F+++ SG P+ F S+ K+C + D R G SV G
Sbjct: 70 VLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHG 129
Query: 209 LIFKAGFEKHVSVCNSLITLSLK---MGEVDLARSVFDRMEKR-------DVVSWTVILD 258
I + G + + N+L+ + K MG +VFD M +R DV + T I+
Sbjct: 130 FIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMP 189
Query: 259 VFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSC 318
I+ RR+F+ MP ++ VS++ +IA Y QSG E+A R+ R+M KP++
Sbjct: 190 FGID-----SVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFT 244
Query: 319 FSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIV 378
S VL + + G +H +V++ GI+ DV+I ++L+D+Y+K
Sbjct: 245 LSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAK--------------- 289
Query: 379 EKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAV 438
+ ++E+++ +F + R+ +SW+++++GY+++ +++ +
Sbjct: 290 -------------------SARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRL 330
Query: 439 FNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAK 498
F +M+ + P FSSV+ A A +A+L GK LHG +++ GF ++F+ +AL D Y+K
Sbjct: 331 FRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSK 390
Query: 499 SGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSV 558
G+I+++R++FDRM +E+SWT ++ G A G+ E+++LFEEM++ + PN++ ++V
Sbjct: 391 CGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAV 450
Query: 559 LFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEP 618
L ACSH GLVD+ YFNSM +Y + HY V D+L R+G+L EA +FI+ M EP
Sbjct: 451 LTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEP 510
Query: 619 DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRK 678
+ W++LLS C +KN ++AE+ + ++ + E+ YVL+ N+YAS GRW + +R
Sbjct: 511 TGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRL 570
Query: 679 LMTEKGLRKSGGCSWVEVRNQVHFFFQKTDHNP 711
M +KGLRK CSW+E++N+ H F +P
Sbjct: 571 RMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHP 603
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/589 (33%), Positives = 323/589 (54%), Gaps = 66/589 (11%)
Query: 124 LISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPN 183
L+ + + R++ + FE P ++ +++ I G+ ++G E++ LFLK+ +SG +P+
Sbjct: 190 LLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPS 249
Query: 184 EVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFD 243
+ TFS + KA ++DF LG + L GF + SV N
Sbjct: 250 DFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQ------------------- 290
Query: 244 RMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRL 303
ILD + + + E R +FDEMPE + VS++V+I+ Y+Q+ E +
Sbjct: 291 ------------ILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHF 338
Query: 304 FRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSK 363
FR+M F F+ +LS A+L +L+ G +H L + + + N+L+D+Y+K
Sbjct: 339 FREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAK 398
Query: 364 CGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAII 423
C EEA+ +F ++P+R VSW+A+I
Sbjct: 399 CE----------------------------------MFEEAELIFKSLPQRTTVSWTALI 424
Query: 424 SGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFP 483
SGY++ +F +M S ++STF++VL ASAS ASL GK LH II+ G
Sbjct: 425 SGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNL 484
Query: 484 YDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEM 543
+VF G+ L D YAK G I+ + +VF+ MPD+N +SW ++ A++G + +I F +M
Sbjct: 485 ENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKM 544
Query: 544 EKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGR 603
++ + P+ ++IL VL ACSH G V++G +YF +M PIY I P +HY C++D+L R+GR
Sbjct: 545 IESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGR 604
Query: 604 LSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAE-EHPAGYVLLSN 662
+EAE ++ MPFEPD W+S+L+ C+ +KN+ +AERA + L+ + + A YV +SN
Sbjct: 605 FAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSN 664
Query: 663 IYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDHNP 711
IYA+AG W +V+K M E+G++K SWVEV +++H F +P
Sbjct: 665 IYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHP 713
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 203/635 (31%), Positives = 337/635 (53%), Gaps = 36/635 (5%)
Query: 78 IVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEES 137
I++ L + ++N +++A + A+R+FD +P+ N SW L+ + K G + E
Sbjct: 32 IIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEM 91
Query: 138 MWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLES-GVKPNEVTFSSICKACAE 196
FE+ P ++ ++W I G+ +G A+K + ++ VT ++ K +
Sbjct: 92 ESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSS 151
Query: 197 INDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVI 256
LG + G + K GFE ++ V + L+ + +G + A+ VF ++ R+ V + +
Sbjct: 152 NGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSL 211
Query: 257 LDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNT 316
+ + G + +A ++F M E++ VSW+ MI Q+G +EA FR+M K +
Sbjct: 212 MGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQ 270
Query: 317 SCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDS 376
F VL A L A+ G +HA +++ + +++ +ALID+Y KC
Sbjct: 271 YPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCK----------- 319
Query: 377 IVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVF 436
+ AK +FD M ++N VSW+A++ GY + + +
Sbjct: 320 -----------------------CLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAV 356
Query: 437 AVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTY 496
+F +M SG P+ T + A A+V+SLE+G HGK I G + V + +L Y
Sbjct: 357 KIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLY 416
Query: 497 AKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTIL 556
K GDI+ S R+F+ M ++ +SWT MV A+ G A E+I LF++M + + P+ +T+
Sbjct: 417 GKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLT 476
Query: 557 SVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPF 616
V+ ACS +GLV+KG +YF M Y I P+ HY+C++D+ SRSGRL EA FIN MPF
Sbjct: 477 GVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPF 536
Query: 617 EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNV 676
PD+ W +LLS C+ N +I + A ++L +L HPAGY LLS+IYAS G+W +
Sbjct: 537 PPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQL 596
Query: 677 RKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDHNP 711
R+ M EK ++K G SW++ + ++H F + +P
Sbjct: 597 RRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSP 631
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust.
Identities = 198/605 (32%), Positives = 331/605 (54%), Gaps = 67/605 (11%)
Query: 109 LFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEA 168
L G ERN V +L++ ++K+ RV+ + F+ ++VISW + I G+V NG + +
Sbjct: 222 LKSGFGERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKG 280
Query: 169 LKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITL 228
L +F+++L SG++ + T S+ CA+ LG +V + KA F + CN+L
Sbjct: 281 LSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTL--- 337
Query: 229 SLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMI 288
LD++ + GDL A+ +F EM +R+ VS++ MI
Sbjct: 338 ----------------------------LDMYSKCGDLDSAKAVFREMSDRSVVSYTSMI 369
Query: 289 ARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIE 348
A Y + G EA +LF +M P+ + VL+ A + L G VH + + +
Sbjct: 370 AGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLG 429
Query: 349 KDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELF 408
D+F+SNAL+D+Y+KC G M+EA+ +F
Sbjct: 430 FDIFVSNALMDMYAKC----------------------------------GSMQEAELVF 455
Query: 409 DNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEI-PNKSTFSSVLCASASVASL 467
M ++ +SW+ II GY ++ + ++FN +L P++ T + VL A AS+++
Sbjct: 456 SEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAF 515
Query: 468 EKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGL 527
+KG+++HG I++ G+ D + +L D YAK G + + +FD + K+ +SWTVM+ G
Sbjct: 516 DKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGY 575
Query: 528 AESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN 587
G+ KE+I LF +M + I +E++ +S+L+ACSHSGLVD+G ++FN M I+P
Sbjct: 576 GMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPT 635
Query: 588 GRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLW 647
HY C+VDML+R+G L +A FI +MP PD+ W +LL GC+ + + ++AE+ + ++
Sbjct: 636 VEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVF 695
Query: 648 KLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKT 707
+L E+ YVL++NIYA A +W +RK + ++GLRK+ GCSW+E++ +V+ F
Sbjct: 696 ELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGD 755
Query: 708 DHNPK 712
NP+
Sbjct: 756 SSNPE 760
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/539 (34%), Positives = 310/539 (57%), Gaps = 5/539 (0%)
Query: 167 EALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEK-HVSVCNSL 225
+A+ L + G++ +S+ + C + + G + + GF++ + + N L
Sbjct: 29 QAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHL 88
Query: 226 ITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWS 285
I + +K G+ A VFD+M R++ SW ++ +++ G L AR +FD MPER+ VSW+
Sbjct: 89 IGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWN 148
Query: 286 VMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKI 345
M+ Y Q G EA +++ R K N F+ +L+A + L+ H VL
Sbjct: 149 TMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVA 208
Query: 346 GIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAK 405
G +V +S ++ID Y+KCG+ + + FD + KD+ H+ W ++I GY G ME A+
Sbjct: 209 GFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDI-HI--WTTLISGYAKLGDMEAAE 265
Query: 406 ELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVA 465
+LF MP++N VSW+A+I+GY+ + +F +M+ G P + TFSS LCASAS+A
Sbjct: 266 KLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIA 325
Query: 466 SLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNE-ISWTVMV 524
SL GK++HG +I+ + + ++L D Y+KSG +E+S RVF DK++ + W M+
Sbjct: 326 SLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMI 385
Query: 525 RGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNI 584
LA+ G +++ + ++M K + PN T++ +L ACSHSGLV++GL++F SM + I
Sbjct: 386 SALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGI 445
Query: 585 KPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVK 644
P+ HY C++D+L R+G E I MPFEPD + W ++L C+ + NE++ ++A
Sbjct: 446 VPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAAD 505
Query: 645 NLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFF 703
L KL E A Y+LLS+IYA G+W +R +M ++ + K SW+E+ +V F
Sbjct: 506 ELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKAVSWIEIEKKVEAF 564
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 364 bits (934), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 198/599 (33%), Positives = 335/599 (55%), Gaps = 15/599 (2%)
Query: 124 LISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPN 183
LI+ + + ++ + P + S+++ I + +++ +F ++ G+ P+
Sbjct: 56 LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115
Query: 184 EVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFD 243
++ K CAE++ F++G + + +G + V S+ + ++ G + AR VFD
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175
Query: 244 RMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMP----ERNEVSWSVMIARYNQSGYPEE 299
RM +DVV+ + +L + G L E RI EM E N VSW+ +++ +N+SGY +E
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKE 235
Query: 300 AFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALID 359
A +F+++ F P+ S VL ++ + L G +H +V+K G+ KD + +A+ID
Sbjct: 236 AVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMID 295
Query: 360 LYSKCGETKDGRLVFDS--IVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKR--- 414
+Y K G +F+ ++E V N+ I G NG +++A E+F+ ++
Sbjct: 296 MYGKSGHVYGIISLFNQFEMMEAGVC-----NAYITGLSRNGLVDKALEMFELFKEQTME 350
Query: 415 -NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDL 473
N VSW++II+G ++ + +F EM ++G PN T S+L A ++A+L G+
Sbjct: 351 LNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRST 410
Query: 474 HGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYA 533
HG +++ +V +G+AL D YAK G I S+ VF+ MP KN + W ++ G + G A
Sbjct: 411 HGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKA 470
Query: 534 KESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTC 593
KE +++FE + +T + P+ ++ S+L AC GL D+G KYF M Y IKP HY+C
Sbjct: 471 KEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSC 530
Query: 594 VVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653
+V++L R+G+L EA D I MPFEPDS W +LL+ C+ N +AE A + L+ L E+
Sbjct: 531 MVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPEN 590
Query: 654 PAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDHNPK 712
P YVLLSNIYA+ G W + ++R M GL+K+ GCSW++V+N+V+ +P+
Sbjct: 591 PGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQ 649
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 712 | ||||||
| 255567371 | 2000 | pentatricopeptide repeat-containing prot | 0.987 | 0.351 | 0.693 | 0.0 | |
| 359488823 | 1984 | PREDICTED: uncharacterized protein LOC10 | 0.984 | 0.353 | 0.685 | 0.0 | |
| 296087629 | 728 | unnamed protein product [Vitis vinifera] | 0.987 | 0.965 | 0.683 | 0.0 | |
| 147859209 | 728 | hypothetical protein VITISV_001173 [Viti | 0.987 | 0.965 | 0.680 | 0.0 | |
| 310656753 | 788 | PPR domain-containing protein [Triticum | 0.971 | 0.878 | 0.465 | 0.0 | |
| 326507326 | 798 | predicted protein [Hordeum vulgare subsp | 0.971 | 0.867 | 0.458 | 0.0 | |
| 326522488 | 799 | predicted protein [Hordeum vulgare subsp | 0.971 | 0.866 | 0.458 | 0.0 | |
| 413933352 | 788 | pentatricopeptide repeat protein PPR868- | 0.970 | 0.876 | 0.453 | 0.0 | |
| 195647336 | 788 | pentatricopeptide repeat protein PPR868- | 0.970 | 0.876 | 0.451 | 0.0 | |
| 108710611 | 787 | pentatricopeptide, putative, expressed [ | 0.970 | 0.878 | 0.456 | 0.0 |
| >gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1059 bits (2738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/707 (69%), Positives = 605/707 (85%), Gaps = 4/707 (0%)
Query: 1 MKASLRSLFSINPETSFNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTT 60
MK +L++L +INP T F +Y +TC+ LLK++T+Q L+ G ALH HL KTGI E+Y++
Sbjct: 1 MKNTLKTLLAINPATHFKTYAQTCVSLLKNLTNQGLIRDGSALHAHLFKTGISSEQYISI 60
Query: 61 RLLIMYLGSRKSLEANEIVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVS 120
+LLIMYL RKS EA++I KD +GFDLVVHNCMI+AN+Q GNL+EA++LFD MP+ NE+S
Sbjct: 61 KLLIMYLNYRKSAEADQISKDFDGFDLVVHNCMISANVQRGNLDEARKLFDEMPQTNEIS 120
Query: 121 WTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGV 180
WTALISGFMK+GRV ESMWYFERNPFQNV+SWTAAI G+VQNGFS EA+KLF+KLLES V
Sbjct: 121 WTALISGFMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEV 180
Query: 181 KPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARS 240
KPN+VTF+S+ +ACA + DF LG+SV GLI K G+E ++V NSLITL L+MGE+ LAR
Sbjct: 181 KPNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLARE 240
Query: 241 VFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEA 300
VFDRME++DVVSWT ILD+++EM +LGEARRIFDEMP+RNEVSWS MIARY QSGYPEE+
Sbjct: 241 VFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEES 300
Query: 301 FRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDL 360
RLF +M + FKPN SCFS +LSALAS++AL++GM++H HV KIG EKDVF+S++LID+
Sbjct: 301 LRLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDM 360
Query: 361 YSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWS 420
Y KCGETKDGR +FD+I+EK+ +VSWN+M+GGY LNG MEEAK LF+ MP RN+VSWS
Sbjct: 361 YCKCGETKDGRFLFDTILEKN---MVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWS 417
Query: 421 AIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKL 480
AII+G+L+ +QFD +F VFNEM+L GEIPNKSTFSS+LCA AS ASL+KGK+LHGKI+KL
Sbjct: 418 AIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKL 477
Query: 481 GFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLF 540
G D ++GTALTD YAKSGDIESS++VF+RMP KNE+SWT M++GLAESG A+ES+ LF
Sbjct: 478 GIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLF 537
Query: 541 EEMEKT-SITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLS 599
EEMEKT SI PNE+ L+VLFACSHSGLVDKGL YFNSME +Y +KP GRH+TCVVDMLS
Sbjct: 538 EEMEKTSSIAPNEVMFLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLS 597
Query: 600 RSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVL 659
R+GRL EAE+FI SMPF+P++NAWA+LLSGCKTYKNE++AER LW++AE++ AGYVL
Sbjct: 598 RAGRLFEAEEFIYSMPFQPETNAWAALLSGCKTYKNEELAERVAGKLWEMAEKNCAGYVL 657
Query: 660 LSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQK 706
LSNIYASAGRW D + VRKLM KGL+KSGGCSWVE+R++VH F+ +
Sbjct: 658 LSNIYASAGRWRDVLKVRKLMKAKGLKKSGGCSWVEIRDRVHSFYSE 704
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1033 bits (2671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/705 (68%), Positives = 594/705 (84%), Gaps = 4/705 (0%)
Query: 1 MKASLRSLFSINPETSFNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTT 60
M + R+L +I+P+ SF +Y +TC+ LLK ++Q L+ QG LH HLIKTG +RY+
Sbjct: 1 MATTFRTLLAIDPKKSFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAI 60
Query: 61 RLLIMYLGSRKSLEANEIVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVS 120
+LLI+YL RK E ++IVK+ +G DLVV NCMI+A +QWGNL +A+ LFD MPERNEVS
Sbjct: 61 KLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVS 120
Query: 121 WTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGV 180
W+ALISG MK+GRVEESMWYFERNPFQNV+SWTAAI GFV+NG +FEALKLF +LLESGV
Sbjct: 121 WSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGV 180
Query: 181 KPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARS 240
+PN+VTF+S+ +AC E+ DF LG+S+ GL+ KAGFE ++SV NSLITLSL+MGE+DLAR
Sbjct: 181 RPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARR 240
Query: 241 VFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEA 300
VFDRMEKRDVVSWT ILD ++E GDL EARRIFDEMPERNE+SWS MIARY+QSGY EEA
Sbjct: 241 VFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEA 300
Query: 301 FRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDL 360
+LF +M + FKPN SCF+ LSALASL+AL +G+++H HV KIGI+KDVFI ++LIDL
Sbjct: 301 LKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDL 360
Query: 361 YSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWS 420
Y KCG+ DGRLVFD I+EK+ VV WNSM+GGY +NG++EE +ELF+ +P++NDVSW
Sbjct: 361 YCKCGKPDDGRLVFDLILEKN---VVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWG 417
Query: 421 AIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKL 480
II+GYLE++Q + V VFN +L+SG+ PNKSTFSSVLCA AS+ASL+KG ++HGKIIKL
Sbjct: 418 TIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKL 477
Query: 481 GFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLF 540
G YD+F+GTALTD YAK GDI SS++VF+RMP+KNEISWTVM++GLAESG+A ES+ LF
Sbjct: 478 GIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILF 537
Query: 541 EEMEKTS-ITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLS 599
EEME+TS + PNEL +LSVLFACSH GLVDKGL YFNSME +Y IKP G+HYTCVVD+LS
Sbjct: 538 EEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLS 597
Query: 600 RSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVL 659
RSGRL EAE+FI ++PF+P++NAWA+LLSGCK YK+E+IAER K LW+LAE + AGYVL
Sbjct: 598 RSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVL 657
Query: 660 LSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFF 704
LSNIYASAGRWID N+RKLM EKGL+KSGGCSWVEVRNQVH F+
Sbjct: 658 LSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQVHSFY 702
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1030 bits (2664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/707 (68%), Positives = 595/707 (84%), Gaps = 4/707 (0%)
Query: 1 MKASLRSLFSINPETSFNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTT 60
M + R+L +I+P+ SF +Y +TC+ LLK ++Q L+ QG LH HLIKTG +RY+
Sbjct: 1 MATTFRTLLAIDPKKSFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAI 60
Query: 61 RLLIMYLGSRKSLEANEIVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVS 120
+LLI+YL RK E ++IVK+ +G DLVV NCMI+A +QWGNL +A+ LFD MPERNEVS
Sbjct: 61 KLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVS 120
Query: 121 WTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGV 180
W+ALISG MK+GRVEESMWYFERNPFQNV+SWTAAI GFV+NG +FEALKLF +LLESGV
Sbjct: 121 WSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGV 180
Query: 181 KPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARS 240
+PN+VTF+S+ +AC E+ DF LG+S+ GL+ KAGFE ++SV NSLITLSL+MGE+DLAR
Sbjct: 181 RPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARR 240
Query: 241 VFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEA 300
VFDRMEKRDVVSWT ILD ++E GDL EARRIFDEMPERNE+SWS MIARY+QSGY EEA
Sbjct: 241 VFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEA 300
Query: 301 FRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDL 360
+LF +M + FKPN SCF+ LSALASL+AL +G+++H HV KIGI+KDVFI ++LIDL
Sbjct: 301 LKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDL 360
Query: 361 YSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWS 420
Y KCG+ DGRLVFD I+EK+ VV WNSM+GGY +NG++EE +ELF+ +P++NDVSW
Sbjct: 361 YCKCGKPDDGRLVFDLILEKN---VVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWG 417
Query: 421 AIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKL 480
II+GYLE++Q + V VFN +L+SG+ PNKSTFSSVLCA AS+ASL+KG ++HGKIIKL
Sbjct: 418 TIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKL 477
Query: 481 GFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLF 540
G YD+F+GTALTD YAK GDI SS++VF+RMP+KNEISWTVM++GLAESG+A ES+ LF
Sbjct: 478 GIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILF 537
Query: 541 EEMEKTS-ITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLS 599
EEME+TS + PNEL +LSVLFACSH GLVDKGL YFNSME +Y IKP G+HYTCVVD+LS
Sbjct: 538 EEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLS 597
Query: 600 RSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVL 659
RSGRL EAE+FI ++PF+P++NAWA+LLSGCK YK+E+IAER K LW+LAE + AGYVL
Sbjct: 598 RSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVL 657
Query: 660 LSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQK 706
LSNIYASAGRWID N+RKLM EKGL+KSGGCSWVEVRNQVH F+ +
Sbjct: 658 LSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQVHSFYSE 704
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1028 bits (2657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/707 (68%), Positives = 594/707 (84%), Gaps = 4/707 (0%)
Query: 1 MKASLRSLFSINPETSFNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTT 60
M + R+L +I+P+ SF +Y +TC+ LLK ++Q L+ QG LH HLIKTG +RY+
Sbjct: 1 MATTFRTLLAIDPKKSFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAI 60
Query: 61 RLLIMYLGSRKSLEANEIVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVS 120
+LLI+YL RK E ++IVK+ +G DLVV NCMI+A +QWGNL +A+ LFD MPERNEVS
Sbjct: 61 KLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVS 120
Query: 121 WTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGV 180
W+ALISG MK+GRVEESMWYFERNPFQNV+SWTAAI GFV+NG +FEALKLF +LLESGV
Sbjct: 121 WSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGV 180
Query: 181 KPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARS 240
+PN+VTF+S+ +AC E+ DF LG+S+ GL+ KAGFE ++SV NSLITLSL+MGE+DLAR
Sbjct: 181 RPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARR 240
Query: 241 VFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEA 300
VFDRMEKRDVVSWT ILD ++E GDL EARRIFDEMPERNE+SWS MIARY+QSGY EEA
Sbjct: 241 VFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEA 300
Query: 301 FRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDL 360
+LF +M + FKPN SCF+ LSALASL+AL +G+++H HV KIGI+KDVFI ++LIDL
Sbjct: 301 LKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDL 360
Query: 361 YSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWS 420
Y KCG+ DGRLVFD I+EK+ VV WNSM+GGY +NG++EE +ELF+ +P++ND SW
Sbjct: 361 YCKCGKPDDGRLVFDLILEKN---VVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWG 417
Query: 421 AIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKL 480
IJ+GYLE++Q + V VFN +L+SG+ PNKSTFSSVLCA AS+ASL+KG ++HGKIIKL
Sbjct: 418 TIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKL 477
Query: 481 GFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLF 540
G YD+F+GTALTD YAK GDI SS++VF+RMP+KNEISWTVM++GLAESG+A ES+ LF
Sbjct: 478 GIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILF 537
Query: 541 EEMEKTS-ITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLS 599
EEME+TS + PNEL +LSVLFACSH GLVDKGL YFNSME +Y IKP G+HYTCVVD+LS
Sbjct: 538 EEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLS 597
Query: 600 RSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVL 659
RSGRL EAE+FI ++PF+P++NAWA+LLSGCK YK+E+IAER K LW+LAE + AGYVL
Sbjct: 598 RSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVL 657
Query: 660 LSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQK 706
LSNIYASAGRWID N+RKLM EKGL+KSGGCSWVEVRNQVH F+ +
Sbjct: 658 LSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQVHSFYSE 704
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/716 (46%), Positives = 468/716 (65%), Gaps = 24/716 (3%)
Query: 16 SFNSYIETCLCLLKDI----------------TSQNLVIQGRALHGHLIKTGIHKERYLT 59
+F SY ETC LL+ S + + +LH H +++G+ +R +
Sbjct: 59 AFKSYAETCATLLRLCRAAATATSHAAPASFSPSSDRLPLALSLHAHAVRSGVAADRSVA 118
Query: 60 TRLLIMYLGSRKSLEANEIVKDLNGFDLV---VHNCMINANIQWGNLEEAQRLFDGMPER 116
+ LL Y ++ E + D D ++ M++ +++ G++ A+RLFDGMP+R
Sbjct: 119 SHLLTTYAAFARAAERDRAFGDCVAADAASPFAYDFMVSEHVKAGDIASARRLFDGMPDR 178
Query: 117 NEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLL 176
VS+T ++ MK GRV E++ +E+ P +V +TA I GFV+N AL +F K+L
Sbjct: 179 TVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRKML 238
Query: 177 ESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGF-EKHVSVCNSLITLSLKMGEV 235
V+PN +T + KAC +F L LS+ GL K+ F E + V NSLITL L+MG+
Sbjct: 239 SCRVRPNGITIVCMIKACVGAGEFGLALSIVGLAIKSNFFESSIEVQNSLITLYLRMGDA 298
Query: 236 DLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSG 295
AR VFD M+ +DVVSWT +LDV+ E GDL ARR+ D MPERNEVSW +IAR+ Q G
Sbjct: 299 AAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRG 358
Query: 296 YPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISN 355
EA +L+ QM +PN SCFS VLSA ASL+ LR G +HA LK+G +VF+S
Sbjct: 359 NAAEAVKLYSQMLADGCRPNISCFSSVLSACASLEDLRGGARIHARSLKMGSSTNVFVSC 418
Query: 356 ALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRN 415
+LID+Y KC + D + +FD++ +K++ V WNS++ GY NG+M EA LF MP RN
Sbjct: 419 SLIDMYCKCNKCGDAQTIFDTLPQKNI---VCWNSLVSGYSYNGKMVEAMYLFKKMPARN 475
Query: 416 DVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHG 475
SW+ IISGY +++QF FN ML SG++P + TFSSVL A A++ SL GK H
Sbjct: 476 LASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHA 535
Query: 476 KIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKE 535
K IKLG +F+GTAL+D YAKSGD++SS+R+F +MP++N+++WT M++GLAE+G+A+E
Sbjct: 536 KTIKLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAENGFAEE 595
Query: 536 SINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVV 595
SI LFE+M T +TPNE T L++LFACSH GLV++ + YF+ M+ + I P +HYTC+V
Sbjct: 596 SILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFDKMQAL-GISPKEKHYTCMV 654
Query: 596 DMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655
D+L+R+GRL+EAE + P + ++N+WA+LLS C TY+NE+IAERA K L +LA+++ A
Sbjct: 655 DVLARAGRLAEAEALLMKTPSKSEANSWAALLSACNTYRNEEIAERAAKRLHELAKDNTA 714
Query: 656 GYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDHNP 711
GYVLLSN+YAS GRW DA +R LM L+K GGCSWV+VR Q H FF +P
Sbjct: 715 GYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQVRGQYHAFFSWEAKHP 770
|
Source: Triticum aestivum Species: Triticum aestivum Genus: Triticum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/718 (45%), Positives = 464/718 (64%), Gaps = 26/718 (3%)
Query: 16 SFNSYIETCLCLLK------------------DITSQNLVIQGRALHGHLIKTGIHKERY 57
+F SY ETC LL+ ++S + +LH H +++G+ +
Sbjct: 59 AFKSYAETCATLLRLCRATATATATSNAALASSLSSSERLPLALSLHAHAVRSGVAADTS 118
Query: 58 LTTRLLIMYLGSRKSLEANEIVKDL---NGFDLVVHNCMINANIQWGNLEEAQRLFDGMP 114
+ + LL Y ++ E + D ++ M++ +++ G++ A+ LFDGMP
Sbjct: 119 VASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYDFMVHEHVKAGDIASARGLFDGMP 178
Query: 115 ERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLK 174
ERN VS+T ++ MK GRV E++ +E+ P +V +TA I GFV+N AL +F K
Sbjct: 179 ERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRK 238
Query: 175 LLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGF-EKHVSVCNSLITLSLKMG 233
++ GV+PN +TF + KAC +F L +S+ G K+ F E + V NSLITL L+MG
Sbjct: 239 MVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNFFESSIEVQNSLITLYLRMG 298
Query: 234 EVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQ 293
+ AR VFD M+ +DVVSWT +LDV+ E GDL ARR+ D MPERNEVSW +IAR+ Q
Sbjct: 299 DAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQ 358
Query: 294 SGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFI 353
G EA +L+ QM +PN SCFS VLSA A+L+ LR G +HA LK+G +VF+
Sbjct: 359 RGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFV 418
Query: 354 SNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK 413
S++LID+Y KC + +D + +FD++ EK++ V WNS+ GY NG+M EA LF MP
Sbjct: 419 SSSLIDMYCKCKKCRDAQTIFDTLPEKNI---VCWNSLASGYSYNGKMVEAMYLFKKMPA 475
Query: 414 RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDL 473
RN SW+ IISGY +++QF FN ML SG++P + TFSSVL A A++ SL GK
Sbjct: 476 RNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMA 535
Query: 474 HGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYA 533
H K IKLG +F+GTAL+D YAKSGD++SS+R+F +MP++N+++WT M++GLAE+G+A
Sbjct: 536 HAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAENGFA 595
Query: 534 KESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTC 593
+ESI L E+M T +TPNE T L++LFACSH GLV++ + YF M+ + I P +HYTC
Sbjct: 596 EESILLLEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFEKMQA-WGISPKEKHYTC 654
Query: 594 VVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653
+VD+L+R+GRL EAE + P + ++N+WA+LLS C TYKNE+I ERA K L +L +++
Sbjct: 655 MVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEIGERAAKRLHELGKDN 714
Query: 654 PAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDHNP 711
AGYVLLSN+YAS GRW DA +R LM L+K GGCSWV+VR Q H FF +P
Sbjct: 715 TAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQVRGQYHAFFSWEAKHP 772
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/718 (45%), Positives = 464/718 (64%), Gaps = 26/718 (3%)
Query: 16 SFNSYIETCLCLLK------------------DITSQNLVIQGRALHGHLIKTGIHKERY 57
+F SY ETC LL+ ++S + +LH H +++G+ +
Sbjct: 60 AFKSYAETCATLLRLCRATATATATSNAALASSLSSSERLPLALSLHAHAVRSGVAADTS 119
Query: 58 LTTRLLIMYLGSRKSLEANEIVKDL---NGFDLVVHNCMINANIQWGNLEEAQRLFDGMP 114
+ + LL Y ++ E + D ++ M++ +++ G++ A+ LFDGMP
Sbjct: 120 VASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYDFMVHEHVKAGDIASARGLFDGMP 179
Query: 115 ERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLK 174
ER+ VS+T ++ MK GRV E++ +E+ P +V +TA I GFV+N AL +F K
Sbjct: 180 ERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRK 239
Query: 175 LLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGF-EKHVSVCNSLITLSLKMG 233
++ GV+PN +TF + KAC +F L +S+ G K+ F E + V NSLITL L+MG
Sbjct: 240 MVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNFFESSIEVQNSLITLYLRMG 299
Query: 234 EVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQ 293
+ AR VFD M+ +DVVSWT +LDV+ E GDL ARR+ D MPERNEVSW +IAR+ Q
Sbjct: 300 DAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQ 359
Query: 294 SGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFI 353
G EA +L+ QM +PN SCFS VLSA A+L+ LR G +HA LK+G +VF+
Sbjct: 360 RGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFV 419
Query: 354 SNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK 413
S++LID+Y KC + +D + +FD++ EK++ V WNS+ GY NG+M EA LF MP
Sbjct: 420 SSSLIDMYCKCKKCRDAQTIFDTLPEKNI---VCWNSLASGYSYNGKMVEAMYLFKKMPA 476
Query: 414 RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDL 473
RN SW+ IISGY +++QF FN ML SG++P + TFSSVL A A++ SL GK
Sbjct: 477 RNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMA 536
Query: 474 HGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYA 533
H K IKLG +F+GTAL+D YAKSGD++SS+R+F +MP++N+++WT M++GLAE+G A
Sbjct: 537 HAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAENGLA 596
Query: 534 KESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTC 593
+ESI LFE+M T +TPNE T L++LFACSH GLV++ + YF M+ + I P +HYTC
Sbjct: 597 EESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFEKMQA-WGISPKEKHYTC 655
Query: 594 VVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653
+VD+L+R+GRL EAE + P + ++N+WA+LLS C TYKNE+I ERA K L +L +++
Sbjct: 656 MVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEIGERAAKRLHELGKDN 715
Query: 654 PAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDHNP 711
AGYVLLSN+YAS GRW DA +R LM L+K GGCSWV+VR Q H FF +P
Sbjct: 716 TAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQVRGQYHAFFSWEAKHP 773
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/713 (45%), Positives = 467/713 (65%), Gaps = 22/713 (3%)
Query: 17 FNSYIETCLCLLK---DITSQNLVIQGRA-----------LHGHLIKTGIHKERYLTTRL 62
F +Y ETC LL+ +++ + + A LH H +++G+ +R + + L
Sbjct: 62 FKTYSETCASLLRLCRAMSATSTTMPSYAPSSGCLPLVLSLHAHALRSGLATDRSVASNL 121
Query: 63 LIMYLGSRKSLEANEIVKDLNGFDLV---VHNCMINANIQWGNLEEAQRLFDGMPERNEV 119
L Y ++ + ++ +D D ++ M++ +++ G++ A+RLF GMPE++ V
Sbjct: 122 LTAYAAFARAGDRDQAFRDCVAADAASSFTYDFMVSEHVKAGDIASARRLFYGMPEKSVV 181
Query: 120 SWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESG 179
S+T ++ MK G V +++ +ER P +V +TA I GFV+N +A +F K+L
Sbjct: 182 SYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELHKDAFTVFRKMLTCS 241
Query: 180 VKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAG-FEKHVSVCNSLITLSLKMGEVDLA 238
V+PN VT + KAC +F L + V GL K FEK + V NSLITL L+MG+ A
Sbjct: 242 VRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAA 301
Query: 239 RSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPE 298
R VFD ME RDVVSWT +LDV+ ++GDL ARR+ D MP RNEVSW +IAR+ Q G
Sbjct: 302 RRVFDDMEVRDVVSWTALLDVYADLGDLDGARRVLDAMPARNEVSWGTLIARHEQKGDTA 361
Query: 299 EAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALI 358
EA +L+ QM +PN SCFS VLSA A+L+ LR G +HA+ LK+G ++F+S++LI
Sbjct: 362 EALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLI 421
Query: 359 DLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVS 418
D+Y KC + + VF+S+ EK+ V WNS+I GY NG+M EA+ LF+ MP RN VS
Sbjct: 422 DMYCKCKQCTYAQRVFNSLPEKNT---VCWNSLISGYSWNGKMVEAEGLFNKMPARNSVS 478
Query: 419 WSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKII 478
W+ +ISGY E+++F F ML SG IP + T SSVL A A++ SLE G+ +H +I+
Sbjct: 479 WNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIV 538
Query: 479 KLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESIN 538
KLG ++F+GTAL D YAKSGD++SSRRVF +MP+KN I+WT MV+GLAE+G+A+ESI+
Sbjct: 539 KLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESIS 598
Query: 539 LFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDML 598
LFE+M + I PNE T L++LFACSH GLV++ + YF +M+ + I P +HYTC+VD+L
Sbjct: 599 LFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETMQA-HGIPPKSKHYTCMVDVL 657
Query: 599 SRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYV 658
+R+G L EAE+ + + E D+++W+SLLS C TY+N++I ERA K L +L +++ AGYV
Sbjct: 658 ARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNKEIGERAAKKLHELEKDNTAGYV 717
Query: 659 LLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDHNP 711
LLSN+YAS G+W DA R LM L+K GCSW+++R Q H FF + +P
Sbjct: 718 LLSNMYASCGKWKDAAETRILMQGASLKKDAGCSWLQLRGQYHAFFSWKEKHP 770
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/713 (45%), Positives = 466/713 (65%), Gaps = 22/713 (3%)
Query: 17 FNSYIETCLCLLK---DITSQNLVIQGRA-----------LHGHLIKTGIHKERYLTTRL 62
F +Y ETC LL+ +++ + + A LH H ++G+ +R + + L
Sbjct: 62 FKTYSETCASLLRLCRAMSATSTTMPSYAPSSGCLPLVLSLHAHAFRSGLTADRSVASNL 121
Query: 63 LIMYLGSRKSLEANEIVKDLNGFDLV---VHNCMINANIQWGNLEEAQRLFDGMPERNEV 119
L Y ++ + ++ +D D ++ M++ +++ G++ A+RLF GMPE++ V
Sbjct: 122 LTAYAAFTRAADRDQAFRDCVAADAASSFTYDFMVSEHVKAGDIASARRLFYGMPEKSVV 181
Query: 120 SWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESG 179
S+T ++ MK G V +++ +ER P +V +TA I GFV+N +A +F K+L
Sbjct: 182 SYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELHKDAFPVFRKMLTCS 241
Query: 180 VKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAG-FEKHVSVCNSLITLSLKMGEVDLA 238
V+PN VT + KAC +F L + V GL K FEK + V NSLITL L+MG+ A
Sbjct: 242 VRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAA 301
Query: 239 RSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPE 298
VFD ME RDVVSWT +LDV+ ++GDL ARR+ D MP RNEVSW +IAR+ Q G
Sbjct: 302 HRVFDDMEVRDVVSWTALLDVYADLGDLYGARRVLDAMPARNEVSWGTLIARHEQKGDTA 361
Query: 299 EAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALI 358
EA +L+ QM +PN SCFS VLSA A+L+ LR G +HA+ LK+G ++F+S++LI
Sbjct: 362 EALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLI 421
Query: 359 DLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVS 418
D+Y KC + + VF+S+ EK+ V WNS+I GY NG+M EA+ LF+ MP RN VS
Sbjct: 422 DMYCKCKQCTYAQRVFNSLPEKNT---VCWNSLISGYSWNGKMVEAEGLFNKMPARNSVS 478
Query: 419 WSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKII 478
W+ +ISGY E+++F F ML SG IP + T SSVL A A++ SLE G+ +H +I+
Sbjct: 479 WNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIV 538
Query: 479 KLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESIN 538
KLG ++F+GTAL+D YAKSGD++SSRRVF +MP+KN I+WT MV+GLAE+G+A+ESI+
Sbjct: 539 KLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESIS 598
Query: 539 LFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDML 598
LFE+M + I PNE T L++LFACSH GLV++ + YF +M+ + I P +HYTC+VD+L
Sbjct: 599 LFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETMQA-HGIPPKSKHYTCMVDVL 657
Query: 599 SRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYV 658
+R+G L EAE+ + + E D+++W+SLLS C TY+N++I ERA K L +L +++ AGYV
Sbjct: 658 ARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNKEIGERAAKKLHELEKDNTAGYV 717
Query: 659 LLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDHNP 711
LLSN+YAS G+W DA R LM L+K GCSW+++R Q H FF + +P
Sbjct: 718 LLSNMYASCGKWKDAAETRILMQGASLKKDAGCSWLQLRGQYHAFFSWKEKHP 770
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/712 (45%), Positives = 465/712 (65%), Gaps = 21/712 (2%)
Query: 16 SFNSYIETCLCLLK-----------DITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLI 64
SF SY ETC +L+ S NL + ++H H + +G+ + + + LL
Sbjct: 63 SFKSYAETCASILRLCSAAAAASGTAAASSNLPLV-LSIHAHALVSGLTADGSVASHLLT 121
Query: 65 MYLGSRKSLEANEIVKD----LNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVS 120
Y ++ + + +D + ++ M+ +++ G++ A+RLFDGMPER+ VS
Sbjct: 122 AYAAFARAADRDGAFRDCVSVVGAASPFAYDFMVREHVKAGDIVSARRLFDGMPERSVVS 181
Query: 121 WTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGV 180
+T ++ MK G V +++ + + P +V +TA I GFV N +AL +F ++L GV
Sbjct: 182 YTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGV 241
Query: 181 KPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGF-EKHVSVCNSLITLSLKMGEVDLAR 239
PNE+T S+ KAC +F L +S+ GL K+ +K++ V NSLITL L+ G+ D AR
Sbjct: 242 SPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAAR 301
Query: 240 SVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEE 299
+FD ME RDVVSWT +LDV+ E+GDL ARR+ DEMPERNEVSW ++AR+ Q G +E
Sbjct: 302 RMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKE 361
Query: 300 AFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALID 359
A L+ QM +PN SCFS VL A ASL+ LRSG +H LK+ +VF+S+ALID
Sbjct: 362 AVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALID 421
Query: 360 LYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSW 419
+Y KC + D +++F S+ +K++ V WNS+I GY N +M EA+ELF MP RN SW
Sbjct: 422 MYCKCKQLPDAQMIFYSLPQKNI---VCWNSLISGYSNNSKMVEAEELFKKMPARNVASW 478
Query: 420 SAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIK 479
++IISGY +++QF F+ ML SG+ P + TFSSVL A AS+ SLE GK +H KIIK
Sbjct: 479 NSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIK 538
Query: 480 LGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINL 539
LG +F+GTAL+D YAKSGD++SS+RVF MP +N+++WT M++GLAE+G+A+ESI L
Sbjct: 539 LGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILL 598
Query: 540 FEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLS 599
FE+M ITPNE T L++LFACSHSGLV+ + YF M+ I P +HYTC+VD+L+
Sbjct: 599 FEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQAC-GISPKAKHYTCMVDVLA 657
Query: 600 RSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVL 659
R+G L+EAED + + + ++N+WA+LLS C Y+N+++ ERA K L +L +++ AGYVL
Sbjct: 658 RAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVL 717
Query: 660 LSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDHNP 711
LSN+YAS G+W DA +R LM L+K GGCSWV++R Q FF +P
Sbjct: 718 LSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWVQIRGQYQAFFSWETKHP 769
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 712 | ||||||
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.890 | 0.806 | 0.321 | 2.9e-103 | |
| TAIR|locus:2032955 | 790 | AT1G25360 "AT1G25360" [Arabido | 0.870 | 0.784 | 0.323 | 1.1e-94 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.817 | 0.835 | 0.305 | 6.5e-90 | |
| TAIR|locus:2198546 | 760 | AT1G20230 "AT1G20230" [Arabido | 0.823 | 0.771 | 0.319 | 4.4e-88 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.453 | 0.362 | 0.376 | 1.4e-85 | |
| TAIR|locus:2047017 | 597 | AT2G21090 "AT2G21090" [Arabido | 0.720 | 0.859 | 0.330 | 1e-84 | |
| TAIR|locus:2129361 | 612 | AT4G14050 [Arabidopsis thalian | 0.630 | 0.733 | 0.352 | 1.3e-84 | |
| TAIR|locus:2025242 | 695 | AT1G77010 [Arabidopsis thalian | 0.928 | 0.951 | 0.277 | 1.3e-82 | |
| TAIR|locus:2159582 | 849 | SLG1 "AT5G08490" [Arabidopsis | 0.632 | 0.530 | 0.284 | 2.8e-82 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.741 | 0.715 | 0.309 | 7.4e-82 |
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
Identities = 205/637 (32%), Positives = 346/637 (54%)
Query: 78 IVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEES 137
++K F + + N ++N + G A++LFD MP R SW ++S + K G ++ +
Sbjct: 40 VIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDST 99
Query: 138 MWYFERNPFQNVISWTAAICGFVQNGFXXXXXXXXXXXXXXGVKPNEVTFSSICKACAEI 197
+F++ P ++ +SWT I G+ G G++P + T +++ + A
Sbjct: 100 CEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAAT 159
Query: 198 NDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVIL 257
G V I K G +VSV NSL+ + K G+ +A+ VFDRM RD+ SW ++
Sbjct: 160 RCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMI 219
Query: 258 DVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSF-KPNT 316
+ +++G + A F++M ER+ V+W+ MI+ +NQ GY A +F +M R S P+
Sbjct: 220 ALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDR 279
Query: 317 SCFSIVXXXXXXXXXXXXGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDS 376
+ V G +H+H++ G + + NALI +YS+CG + R + +
Sbjct: 280 FTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQ 339
Query: 377 IVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVF 436
KD+ + + +++ GY G M +AK +F ++ R+ V+W+A+I GY +H +
Sbjct: 340 RGTKDLK-IEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAI 398
Query: 437 AVFNEMLLSGEIPNKSTFXXXXXXXXXXXXXEKGKDLHGKIIKLGFPYDVFLGTALTDTY 496
+F M+ G+ PN T GK +HG +K G Y V + AL Y
Sbjct: 399 NLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMY 458
Query: 497 AKSGDIESSRRVFDRMP-DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTI 555
AK+G+I S+ R FD + +++ +SWT M+ LA+ G+A+E++ LFE M + P+ +T
Sbjct: 459 AKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITY 518
Query: 556 LSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMP 615
+ V AC+H+GLV++G +YF+ M+ + I P HY C+VD+ R+G L EA++FI MP
Sbjct: 519 VGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMP 578
Query: 616 FEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMN 675
EPD W SLLS C+ +KN + + A + L L E+ Y L+N+Y++ G+W +A
Sbjct: 579 IEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAK 638
Query: 676 VRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDHNPK 712
+RK M + ++K G SW+EV+++VH F + +P+
Sbjct: 639 IRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPE 675
|
|
| TAIR|locus:2032955 AT1G25360 "AT1G25360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
Identities = 207/639 (32%), Positives = 342/639 (53%)
Query: 84 GFDLVVH--NCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYF 141
GF H N +I+ + L A++LFD + E ++++ T ++SG+ G + + F
Sbjct: 44 GFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVF 103
Query: 142 ERNP--FQNVISWTAAICGFVQNGFXXXXXXXXXXXXXXGVKPNEVTFSSICKACAEI-N 198
E+ P ++ + + A I GF N G KP+ TF+S+ A + +
Sbjct: 104 EKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVAD 163
Query: 199 DFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGE----VDLARSVFDRMEKRDVVSWT 254
D + + K+G SV N+L+++ K + AR VFD + ++D SWT
Sbjct: 164 DEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWT 223
Query: 255 VILDVFIEMG--DLGEARRIFDEMPERNE-VSWSVMIARYNQSGYPEEAFRLFRQMTRYS 311
++ +++ G DLGE + + M + + V+++ MI+ Y G+ +EA + R+M
Sbjct: 224 TMMTGYVKNGYFDLGE--ELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSG 281
Query: 312 FKPNTSCFSIVXXXXXXXXXXXXGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGR 371
+ + + V G VHA+VL+ + N+L+ LY KCG+ + R
Sbjct: 282 IELDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEAR 340
Query: 372 LVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQ 431
+F+ + KD+ VSWN+++ GY +G + EAK +F M ++N +SW +ISG E+
Sbjct: 341 AIFEKMPAKDL---VSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGF 397
Query: 432 FDLVFAVFNEMLLSGEIPNKSTFXXXXXXXXXXXXXEKGKDLHGKIIKLGFPYDVFLGTA 491
+ +F+ M G P F G+ H +++K+GF + G A
Sbjct: 398 GEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNA 457
Query: 492 LTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN 551
L YAK G +E +R+VF MP + +SW ++ L + G+ E+++++EEM K I P+
Sbjct: 458 LITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPD 517
Query: 552 ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFI 611
+T+L+VL ACSH+GLVD+G KYF+SME +Y I P HY ++D+L RSG+ S+AE I
Sbjct: 518 RITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVI 577
Query: 612 NSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWI 671
S+PF+P + W +LLSGC+ + N ++ A L+ L EH Y+LLSN++A+ G+W
Sbjct: 578 ESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWE 637
Query: 672 DAMNVRKLMTEKGLRKSGGCSWVEVRNQVH-FFFQKTDH 709
+ VRKLM ++G++K CSW+E+ QVH F T H
Sbjct: 638 EVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSH 676
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
Identities = 183/600 (30%), Positives = 318/600 (53%)
Query: 124 LISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFXXXXXXXXXXXXXXGVKPN 183
LI + K G +E+ F++ P +N+ +W + + G + GF + +
Sbjct: 61 LIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMP----ERD 116
Query: 184 EVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFD 243
+ T++S+ A+ + L F ++ K GF + S+++ + +++ V
Sbjct: 117 QCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHS 176
Query: 244 RMEKR----DVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEE 299
+ K DV + ++D++ + G++ +A+R+FDEM +RN VSW+ +I + Q+G E
Sbjct: 177 LIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVE 236
Query: 300 AFRLFRQMTRYSFKPNTSCFSIVXXXXXXXXXXXXGMHVHAHVLKIG-IEKDVFISNALI 358
A +F+ M +P+ + V G VH V+K + D+ +SNA +
Sbjct: 237 ALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFV 296
Query: 359 DLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVS 418
D+Y+KC K+ R +FDS+ + +V++ SMI GY + + A+ +F M +RN VS
Sbjct: 297 DMYAKCSRIKEARFIFDSM---PIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVS 353
Query: 419 WSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFXXXXXXXXXXXXXEKGKDLHGKII 478
W+A+I+GY ++ + + ++F + P +F G H ++
Sbjct: 354 WNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVL 413
Query: 479 KLGFPY------DVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGY 532
K GF + D+F+G +L D Y K G +E VF +M +++ +SW M+ G A++GY
Sbjct: 414 KHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGY 473
Query: 533 AKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYT 592
E++ LF EM ++ P+ +T++ VL AC H+G V++G YF+SM + + P HYT
Sbjct: 474 GNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYT 533
Query: 593 CVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE 652
C+VD+L R+G L EA+ I MP +PDS W SLL+ CK ++N + + + L ++
Sbjct: 534 CMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPS 593
Query: 653 HPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDHNPK 712
+ YVLLSN+YA G+W D MNVRK M ++G+ K GCSW++++ H F K +P+
Sbjct: 594 NSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPR 653
|
|
| TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 853 (305.3 bits), Expect = 4.4e-88, Sum P(2) = 4.4e-88
Identities = 191/597 (31%), Positives = 313/597 (52%)
Query: 124 LISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFXXXXXXXXXXXXXXGVKPN 183
LI+ + + ++ + P + S+++ I + G+ P+
Sbjct: 56 LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115
Query: 184 EVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFD 243
++ K CAE++ F++G + + +G + V S+ + ++ G + AR VFD
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175
Query: 244 RMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMP----ERNEVSWSVMIARYNQSGYPEE 299
RM +DVV+ + +L + G L E RI EM E N VSW+ +++ +N+SGY +E
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKE 235
Query: 300 AFRLFRQMTRYSFKPNTSCFSIVXXXXXXXXXXXXGMHVHAHVLKIGIEKDVFISNALID 359
A +F+++ F P+ S V G +H +V+K G+ KD + +A+ID
Sbjct: 236 AVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMID 295
Query: 360 LYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKR----N 415
+Y K G +F+ E A V N+ I G NG +++A E+F+ ++ N
Sbjct: 296 MYGKSGHVYGIISLFNQF-EMMEAGVC--NAYITGLSRNGLVDKALEMFELFKEQTMELN 352
Query: 416 DVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFXXXXXXXXXXXXXEKGKDLHG 475
VSW++II+G ++ + +F EM ++G PN T G+ HG
Sbjct: 353 VVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHG 412
Query: 476 KIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKE 535
+++ +V +G+AL D YAK G I S+ VF+ MP KN + W ++ G + G AKE
Sbjct: 413 FAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKE 472
Query: 536 SINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVV 595
+++FE + +T + P+ ++ S+L AC GL D+G KYF M Y IKP HY+C+V
Sbjct: 473 VMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMV 532
Query: 596 DMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655
++L R+G+L EA D I MPFEPDS W +LL+ C+ N +AE A + L+ L E+P
Sbjct: 533 NLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPG 592
Query: 656 GYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDHNPK 712
YVLLSNIYA+ G W + ++R M GL+K+ GCSW++V+N+V+ +P+
Sbjct: 593 TYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQ 649
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 602 (217.0 bits), Expect = 1.4e-85, Sum P(3) = 1.4e-85
Identities = 127/337 (37%), Positives = 194/337 (57%)
Query: 389 NSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYL--EHKQFDLVFAVFNEMLLSG 446
N+++ Y G+++ A +F M R+ V+W+ +I+GY+ EH + D + + L
Sbjct: 444 NTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHE-DALLLLHKMQNLER 502
Query: 447 EI----------PNKSTFXXXXXXXXXXXXXEKGKDLHGKIIKLGFPYDVFLGTALTDTY 496
++ PN T KGK++H IK DV +G+AL D Y
Sbjct: 503 KVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMY 562
Query: 497 AKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTIL 556
AK G ++ SR+VFD++P KN I+W V++ G +E+I+L M + PNE+T +
Sbjct: 563 AKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFI 622
Query: 557 SVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPF 616
SV ACSHSG+VD+GL+ F M+P Y ++P+ HY CVVD+L R+GR+ EA +N MP
Sbjct: 623 SVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPR 682
Query: 617 EPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMN 675
+ + + AW+SLL + + N +I E A +NL +L + YVLL+NIY+SAG W A
Sbjct: 683 DFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATE 742
Query: 676 VRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDHNPK 712
VR+ M E+G+RK GCSW+E ++VH F +P+
Sbjct: 743 VRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQ 779
|
|
| TAIR|locus:2047017 AT2G21090 "AT2G21090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
Identities = 171/518 (33%), Positives = 284/518 (54%)
Query: 188 SSICKACAEINDFRLGLSVFGLIFKAGFEK-HVSVCNSLITLSLKMGEVDLARSVFDRME 246
+S+ + C + + G + + GF++ + + N LI + +K G+ A VFD+M
Sbjct: 50 ASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMH 109
Query: 247 KRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQ 306
R++ SW ++ +++ G L AR +FD MPER+ VSW+ M+ Y Q G EA +++
Sbjct: 110 LRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKE 169
Query: 307 MTRYSFKPNTSCFSIVXXXXXXXXXXXXGMHVHAHVLKIGIEKDVFISNALIDLYSKCGE 366
R K N F+ + H VL G +V +S ++ID Y+KCG+
Sbjct: 170 FRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQ 229
Query: 367 TKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGY 426
+ + FD + KD+ H+ W ++I GY G ME A++LF MP++N VSW+A+I+GY
Sbjct: 230 MESAKRCFDEMTVKDI-HI--WTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGY 286
Query: 427 LEHKQFDLVFAVFNEMLLSGEIPNKSTFXXXXXXXXXXXXXEKGKDLHGKIIKLGFPYDV 486
+ + +F +M+ G P + TF GK++HG +I+ +
Sbjct: 287 VRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNA 346
Query: 487 FLGTALTDTYAKSGDIESSRRVFDRMPDKNE-ISWTVMVRGLAESGYAKESINLFEEMEK 545
+ ++L D Y+KSG +E+S RVF DK++ + W M+ LA+ G +++ + ++M K
Sbjct: 347 IVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIK 406
Query: 546 TSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLS 605
+ PN T++ +L ACSHSGLV++GL++F SM + I P+ HY C++D+L R+G
Sbjct: 407 FRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFK 466
Query: 606 EAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665
E I MPFEPD + W ++L C+ + NE++ ++A L KL E A Y+LLS+IYA
Sbjct: 467 ELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYA 526
Query: 666 SAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFF 703
G+W +R +M ++ + K SW+E+ +V F
Sbjct: 527 DHGKWELVEKLRGVMKKRRVNKEKAVSWIEIEKKVEAF 564
|
|
| TAIR|locus:2129361 AT4G14050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 786 (281.7 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
Identities = 162/460 (35%), Positives = 260/460 (56%)
Query: 256 ILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYS-FKP 314
+++V+ + G A ++FDEMP R+ ++W+ ++ NQ+ + +F + S +P
Sbjct: 44 LVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRP 103
Query: 315 NTSCFSIVXXXXXXXXXXXXGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVF 374
+ FS + G VH H + D + ++L+D+Y+KCG + VF
Sbjct: 104 DDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVF 163
Query: 375 DSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDL 434
DSI V + +SW +M+ GY +G+ EEA ELF +P +N SW+A+ISG+++ +
Sbjct: 164 DSI---RVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLE 220
Query: 435 VFAVFNEMLLSG-EIPNKSTFXXXXXXXXXXXXXEKGKDLHGKIIKLGFPYDVFLGTALT 493
F+VF EM +I + G+ +HG +I LGF VF+ AL
Sbjct: 221 AFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALI 280
Query: 494 DTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNEL 553
D YAK D+ +++ +F RM ++ +SWT ++ G+A+ G A++++ L+++M + PNE+
Sbjct: 281 DMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEV 340
Query: 554 TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINS 613
T + +++ACSH G V+KG + F SM Y I+P+ +HYTC++D+L RSG L EAE+ I++
Sbjct: 341 TFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHT 400
Query: 614 MPFEPDSNAWASLLSGCKTYKNEQIAERAVKNL---WKLAEEHPAGYVLLSNIYASAGRW 670
MPF PD WA+LLS CK Q+ R +L +KL + P+ Y+LLSNIYASA W
Sbjct: 401 MPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKD--PSTYILLSNIYASASLW 458
Query: 671 IDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQ-KTDH 709
R+ + E +RK G S VEVR + F+ +T H
Sbjct: 459 GKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSH 498
|
|
| TAIR|locus:2025242 AT1G77010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
Identities = 186/671 (27%), Positives = 338/671 (50%)
Query: 27 LLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTR-LLIMYLGSRKSLEANEIVKDLNGF 85
LL+ +S+N R +G L+K G + LL MY S K A + ++
Sbjct: 32 LLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDEMPDR 91
Query: 86 DLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNP 145
+ N MI + G + R FD MPER+ SW ++SGF K G + + F P
Sbjct: 92 NYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLFNAMP 151
Query: 146 FQNVISWTAAICGFVQNGFXXXXXXXXXXXXXXGVKPNEVTFSSICKACAEINDFRLGLS 205
++V++ + + G++ NG+ + +T +++ KACAE+ + G
Sbjct: 152 EKDVVTLNSLLHGYILNGYAEEALRLFKELNFSA---DAITLTTVLKACAELEALKCGKQ 208
Query: 206 VFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGD 265
+ I G E + +SL+ + K G++ +A + +++ + D S + ++ + G
Sbjct: 209 IHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGR 268
Query: 266 LGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVXXX 325
+ E+R +FD R + W+ MI+ Y + EA LF +M R + ++ + V
Sbjct: 269 VNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEM-RNETREDSRTLAAVINA 327
Query: 326 XXXXXXXXXGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHV 385
G +H H K G+ D+ +++ L+D+YSKCG + +F + D
Sbjct: 328 CIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDT--- 384
Query: 386 VSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLS 445
+ NSMI Y G++++AK +F+ + ++ +SW+++ +G+ ++ F++M
Sbjct: 385 ILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKL 444
Query: 446 GEIP-NKSTFXXXXXXXXXXXXXEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIES 504
++P ++ + E G+ + + +G D + ++L D Y K G +E
Sbjct: 445 -DLPTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEH 503
Query: 505 SRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSH 564
RRVFD M +E+ W M+ G A +G E+I+LF++M I P ++T + VL AC++
Sbjct: 504 GRRVFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNY 563
Query: 565 SGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWA 624
GLV++G K F SM+ + P+ H++C+VD+L+R+G + EA + + MPF+ D + W+
Sbjct: 564 CGLVEEGRKLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWS 623
Query: 625 SLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684
S+L GC + + ++A + + +L E+ YV LS I+A++G W + VRKLM E
Sbjct: 624 SILRGCVANGYKAMGKKAAEKIIELEPENSVAYVQLSAIFATSGDWESSALVRKLMRENN 683
Query: 685 LRKSGGCSWVE 695
+ K+ G SW +
Sbjct: 684 VTKNPGSSWTD 694
|
|
| TAIR|locus:2159582 SLG1 "AT5G08490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 592 (213.5 bits), Expect = 2.8e-82, Sum P(3) = 2.8e-82
Identities = 132/464 (28%), Positives = 231/464 (49%)
Query: 256 ILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPN 315
++ + GD A F M ++ +SW+ ++ + S P++ F+ F + +
Sbjct: 372 LISFYARFGDTSAAYWAFSLMSTKDIISWNAILDAFADS--PKQ-FQ-FLNLLHHLLNEA 427
Query: 316 TSCFSIVXXXXXXXXXXXXGM----HVHAHVLKIGI---EKDVFISNALIDLYSKCGETK 368
+ S+ G+ VH + +K G+ E++ + NAL+D Y+KCG +
Sbjct: 428 ITLDSVTILSLLKFCINVQGIGKVKEVHGYSVKAGLLHDEEEPKLGNALLDAYAKCGNVE 487
Query: 369 DGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLE 428
+F + E+ +VS+NS++ GY +G ++A+ LF M + +WS ++ Y E
Sbjct: 488 YAHKIFLGLSERRT--LVSYNSLLSGYVNSGSHDDAQMLFTEMSTTDLTTWSLMVRIYAE 545
Query: 429 HKQFDLVFAVFNEMLLSGEIPNKSTFXXXXXXXXXXXXXEKGKDLHGKIIKLGFPYDVFL 488
+ VF E+ G PN T + HG II+ G D+ L
Sbjct: 546 SCCPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGYIIRGGLG-DIRL 604
Query: 489 GTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSI 548
L D YAK G ++ + VF ++ + +T MV G A G KE++ ++ M +++I
Sbjct: 605 KGTLLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVAGYAVHGRGKEALMIYSHMTESNI 664
Query: 549 TPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAE 608
P+ + I ++L AC H+GL+ GL+ ++S+ ++ +KP Y C VD+++R GRL +A
Sbjct: 665 KPDHVFITTMLTACCHAGLIQDGLQIYDSIRTVHGMKPTMEQYACAVDLIARGGRLDDAY 724
Query: 609 DFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAG 668
F+ MP EP++N W +LL C TY + +L + + +VL+SN+YA+
Sbjct: 725 SFVTQMPVEPNANIWGTLLRACTTYNRMDLGHSVANHLLQAESDDTGNHVLISNMYAADA 784
Query: 669 RWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDHNPK 712
+W M +R LM +K ++K GCSW+EV Q + F +P+
Sbjct: 785 KWEGVMELRNLMKKKEMKKPAGCSWLEVDGQRNVFVSGDCSHPR 828
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 774 (277.5 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
Identities = 166/537 (30%), Positives = 288/537 (53%)
Query: 181 KPNEVTFSSICKACAEINDFRLGLSVF-GLIFKAGFEKHVSVCNSLITLSLKMGEVDLAR 239
KPN ++++ +A A D L + F ++ ++ + LI + ++ + L +
Sbjct: 92 KPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQ 151
Query: 240 SVFDRMEKR----DVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSG 295
S+ K DV ++ + GDL A ++F + E++ VSW+ MI + Q G
Sbjct: 152 SLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKG 211
Query: 296 YPEEAFRLFRQMTRYSFKPNTSCFSIVXXXXXXXXXXXXGMHVHAHVLKIGIEKDVFISN 355
P++A LF++M K + V G V +++ + + ++ ++N
Sbjct: 212 SPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLAN 271
Query: 356 ALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRN 415
A++D+Y+KCG +D + +FD++ EKD V+W +M+ GY ++ E A+E+ ++MP+++
Sbjct: 272 AMLDMYTKCGSIEDAKRLFDAMEEKDN---VTWTTMLDGYAISEDYEAAREVLNSMPQKD 328
Query: 416 DVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIP-NKSTFXXXXXXXXXXXXXEKGKDLH 474
V+W+A+IS Y ++ + + VF+E+ L + N+ T E G+ +H
Sbjct: 329 IVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIH 388
Query: 475 GKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAK 534
I K G + + +AL Y+K GD+E SR VF+ + ++ W+ M+ GLA G
Sbjct: 389 SYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGN 448
Query: 535 ESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCV 594
E++++F +M++ ++ PN +T +V ACSH+GLVD+ F+ ME Y I P +HY C+
Sbjct: 449 EAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACI 508
Query: 595 VDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654
VD+L RSG L +A FI +MP P ++ W +LL CK + N +AE A L +L +
Sbjct: 509 VDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRND 568
Query: 655 AGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDHNP 711
+VLLSNIYA G+W + +RK M GL+K GCS +E+ +H F + +P
Sbjct: 569 GAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHP 625
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SIT7 | PP151_ARATH | No assigned EC number | 0.3188 | 0.8904 | 0.9096 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 712 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-131 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-118 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-65 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-65 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-45 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-36 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-24 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-23 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 408 bits (1049), Expect = e-131
Identities = 203/591 (34%), Positives = 322/591 (54%), Gaps = 69/591 (11%)
Query: 123 ALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKP 182
ALI+ ++K G V + F+R P ++ ISW A I G+ +NG E L+LF + E V P
Sbjct: 227 ALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286
Query: 183 NEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVF 242
+ +T +S+ AC + D RLG + G + K GF VSVCNSLI + L +G A VF
Sbjct: 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346
Query: 243 DRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFR 302
RME +D VSWT MI+ Y ++G P++A
Sbjct: 347 SRMETKDAVSWTA-------------------------------MISGYEKNGLPDKALE 375
Query: 303 LFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYS 362
+ M + + P+ + VLSA A L L G+ +H + G+ V ++NALI++YS
Sbjct: 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435
Query: 363 KCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAI 422
KC +++A E+F N+P+++ +SW++I
Sbjct: 436 KCK----------------------------------CIDKALEVFHNIPEKDVISWTSI 461
Query: 423 ISGY-LEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLG 481
I+G L ++ F+ + F +MLL+ + PN T + L A A + +L GK++H +++ G
Sbjct: 462 IAGLRLNNRCFEALI-FFRQMLLTLK-PNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519
Query: 482 FPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFE 541
+D FL AL D Y + G + + F+ +K+ +SW +++ G G ++ LF
Sbjct: 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFN 578
Query: 542 EMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRS 601
M ++ + P+E+T +S+L ACS SG+V +GL+YF+SME Y+I PN +HY CVVD+L R+
Sbjct: 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638
Query: 602 GRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLS 661
G+L+EA +FIN MP PD W +LL+ C+ +++ ++ E A +++++L Y+LL
Sbjct: 639 GKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLC 698
Query: 662 NIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDHNPK 712
N+YA AG+W + VRK M E GL GCSWVEV+ +VH F + +P+
Sbjct: 699 NLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQ 749
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 369 bits (948), Expect = e-118
Identities = 186/527 (35%), Positives = 272/527 (51%), Gaps = 42/527 (7%)
Query: 188 SSIC---KACAEINDFRLGLSVF-GLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFD 243
S+C + R L +F L F S ++L+ + + + ++V+
Sbjct: 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYW 147
Query: 244 RMEKR----DVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEE 299
+E D +L + ++ G L +ARR+FDEMPERN SW +I +G E
Sbjct: 148 HVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYRE 207
Query: 300 AFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALID 359
AF LFR+M F ++L A A L + R+G +H VLK G+ D F+S ALID
Sbjct: 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267
Query: 360 LYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSW 419
+YSKCG+ +D R VFD + EK V+WNSM+ GY L+G EEA L+
Sbjct: 268 MYSKCGDIEDARCVFDGMPEKTT---VAWNSMLAGYALHGYSEEALCLY----------- 313
Query: 420 SAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIK 479
EM SG ++ TFS ++ + +A LE K H +I+
Sbjct: 314 --------------------YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353
Query: 480 LGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINL 539
GFP D+ TAL D Y+K G +E +R VFDRMP KN ISW ++ G G +++ +
Sbjct: 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEM 413
Query: 540 FEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLS 599
FE M + PN +T L+VL AC +SGL ++G + F SM + IKP HY C++++L
Sbjct: 414 FERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473
Query: 600 RSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVL 659
R G L EA I PF+P N WA+LL+ C+ +KN ++ A + L+ + E YV+
Sbjct: 474 REGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV 533
Query: 660 LSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQK 706
L N+Y S+GR +A V + + KGL C+W+EV+ Q H FF
Sbjct: 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSG 580
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 1e-65
Identities = 153/550 (27%), Positives = 243/550 (44%), Gaps = 100/550 (18%)
Query: 80 KDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMW 139
+ + N M++ +++G L A +F MPER+ SW L+ G+ K G
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAG------- 166
Query: 140 YFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEIND 199
YF+ EAL L+ ++L +GV+P+ TF + + C I D
Sbjct: 167 YFD------------------------EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202
Query: 200 FRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDV 259
G V + + GFE V V N+LIT+ +K G DVVS
Sbjct: 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCG---------------DVVS------- 240
Query: 260 FIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCF 319
AR +FD MP R+ +SW+ MI+ Y ++G E LF M S P+
Sbjct: 241 ---------ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291
Query: 320 SIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVE 379
+ V+SA L R G +H +V+K G DV + N+LI +Y
Sbjct: 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL--------------- 336
Query: 380 KDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVF 439
G EA+++F M ++ VSW+A+ISGY ++ D +
Sbjct: 337 -------------------GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETY 377
Query: 440 NEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKS 499
M P++ T +SVL A A + L+ G LH + G V + AL + Y+K
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437
Query: 500 GDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVL 559
I+ + VF +P+K+ ISWT ++ GL + E++ F +M ++ PN +T+++ L
Sbjct: 438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAAL 496
Query: 560 FACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPD 619
AC+ G + G K ++ I +G ++D+ R GR++ A + NS E D
Sbjct: 497 SACARIGALMCG-KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKD 553
Query: 620 SNAWASLLSG 629
+W LL+G
Sbjct: 554 VVSWNILLTG 563
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 231 bits (590), Expect = 4e-65
Identities = 130/483 (26%), Positives = 225/483 (46%), Gaps = 79/483 (16%)
Query: 153 TAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFK 212
+ + +G +ALKL + E V +E + ++ + C +++ +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLC----EWKRAVE------- 103
Query: 213 AGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRI 272
G +S +L +++G +L +F+ G+L A +
Sbjct: 104 EGSRVCSRALSSHPSLGVRLG--------------------NAMLSMFVRFGELVHAWYV 143
Query: 273 FDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKAL 332
F +MPER+ SW+V++ Y ++GY +EA L+ +M +P+ F VL + L
Sbjct: 144 FGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203
Query: 333 RSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMI 392
G VHAHV++ G E DV + NALI +Y KCG+ RLVFD + +D +SWN+MI
Sbjct: 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD---CISWNAMI 260
Query: 393 GGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKS 452
GY NG+ E ELF M + V P+
Sbjct: 261 SGYFENGECLEGLELFFTM-RELSVD------------------------------PDLM 289
Query: 453 TFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRM 512
T +SV+ A + G+++HG ++K GF DV + +L Y G + +VF RM
Sbjct: 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349
Query: 513 PDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGL 572
K+ +SWT M+ G ++G +++ + ME+ +++P+E+TI SVL AC+ G +D G+
Sbjct: 350 ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV 409
Query: 573 KYFNSMEPIYNIKPNGRHYTCVV------DMLSRSGRLSEAEDFINSMPFEPDSNAWASL 626
K ++ + + VV +M S+ + +A + +++P E D +W S+
Sbjct: 410 K-------LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSI 461
Query: 627 LSG 629
++G
Sbjct: 462 IAG 464
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 2e-45
Identities = 110/433 (25%), Positives = 174/433 (40%), Gaps = 127/433 (29%)
Query: 41 RALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNGFDLVVHNCMINANIQW 100
+A++ H+ +G ++Y+ R+L+M++ C
Sbjct: 143 KAVYWHVESSGFEPDQYMMNRVLLMHV-----------------------KC-------- 171
Query: 101 GNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFV 160
G L +A+RLFD MPERN SW +I G + G
Sbjct: 172 GMLIDARRLFDEMPERNLASWGTIIGGLVDAGN--------------------------- 204
Query: 161 QNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVS 220
EA LF ++ E G TF + +A A + R G + +
Sbjct: 205 ----YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG-------------QQLH 247
Query: 221 VCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERN 280
C LK G V D ++D++ + GD+ +AR +FD MPE+
Sbjct: 248 CC------VLKTGVVG------------DTFVSCALIDMYSKCGDIEDARCVFDGMPEKT 289
Query: 281 EVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHA 340
V+W+ M+A Y GY EEA L+ +M + FSI++ + L L HA
Sbjct: 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349
Query: 341 HVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQ 400
+++ G D+ + AL+DLYSK W G+
Sbjct: 350 GLIRTGFPLDIVANTALVDLYSK------------------------W----------GR 375
Query: 401 MEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCA 460
ME+A+ +FD MP++N +SW+A+I+GY H + +F M+ G PN TF +VL A
Sbjct: 376 MEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 461 SASVASLEKGKDL 473
E+G ++
Sbjct: 436 CRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 5e-36
Identities = 90/338 (26%), Positives = 148/338 (43%), Gaps = 38/338 (11%)
Query: 294 SGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFI 353
G E+A +L M + + + +A+ G V + L V +
Sbjct: 64 HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRL 123
Query: 354 SNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK 413
NA++ ++ + GE VF + E+D+ SWN ++GGY G +EA L+
Sbjct: 124 GNAMLSMFVRFGELVHAWYVFGKMPERDL---FSWNVLVGGYAKAGYFDEALCLY----- 175
Query: 414 RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDL 473
H+ ML +G P+ TF VL + L +G+++
Sbjct: 176 ---------------HR-----------MLWAGVRPDVYTFPCVLRTCGGIPDLARGREV 209
Query: 474 HGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYA 533
H +++ GF DV + AL Y K GD+ S+R VFDRMP ++ ISW M+ G E+G
Sbjct: 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGEC 269
Query: 534 KESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGL-KYFNSMEPIYNIKPNGRHYT 592
E + LF M + S+ P+ +TI SV+ AC G D+ L + + +
Sbjct: 270 LEGLELFFTMRELSVDPDLMTITSVISACELLG--DERLGREMHGYVVKTGFAVDVSVCN 327
Query: 593 CVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGC 630
++ M G EAE + M + D+ +W +++SG
Sbjct: 328 SLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMISGY 364
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 9e-24
Identities = 101/399 (25%), Positives = 173/399 (43%), Gaps = 63/399 (15%)
Query: 9 FSINPE-TSFNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYL 67
S++P+ + S I C LL D GR +HG+++KTG + + L+ MYL
Sbjct: 282 LSVDPDLMTITSVISACE-LLGDERL------GREMHGYVVKTGFAVDVSVCNSLIQMYL 334
Query: 68 GSRKSLEANEIVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVS------- 120
EA ++ + D V MI+ + G ++A + M E++ VS
Sbjct: 335 SLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM-EQDNVSPDEITIA 393
Query: 121 ---------------------------------WTALISGFMKHGRVEESMWYFERNPFQ 147
ALI + K +++++ F P +
Sbjct: 394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453
Query: 148 NVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVF 207
+VISWT+ I G N FEAL F ++L + +KPN VT + ACA I G +
Sbjct: 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIH 512
Query: 208 GLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLG 267
+ + G + N+L+ L ++ G ++ A + F+ EK DVVSW ++L ++ G
Sbjct: 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGS 571
Query: 268 EARRIFDEMPER----NEVSWSVMIARYNQSGYPEEAFRLFRQMT-RYSFKPNTSCFSIV 322
A +F+ M E +EV++ ++ ++SG + F M +YS PN ++ V
Sbjct: 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631
Query: 323 LSALASLKALRSGMHVHAH--VLKIGIEKDVFISNALID 359
+ L R+G A+ + K+ I D + AL++
Sbjct: 632 VDLLG-----RAGKLTEAYNFINKMPITPDPAVWGALLN 665
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-23
Identities = 64/293 (21%), Positives = 127/293 (43%), Gaps = 67/293 (22%)
Query: 27 LLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNGFD 86
+L+ G+ LH ++KTG+ + +++ L+ MY
Sbjct: 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMY-------------------- 269
Query: 87 LVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPF 146
C G++E+A+ +FDGMPE+ V+W ++++G+ HG EE
Sbjct: 270 ---SKC--------GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEE---------- 308
Query: 147 QNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSV 206
AL L+ ++ +SGV ++ TFS + + + +
Sbjct: 309 ---------------------ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347
Query: 207 FGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDL 266
+ + GF + +L+ L K G ++ AR+VFDRM +++++SW ++ + G
Sbjct: 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRG 407
Query: 267 GEARRIFDEMPER----NEVSWSVMIARYNQSGYPEEAFRLFRQMTR-YSFKP 314
+A +F+ M N V++ +++ SG E+ + +F+ M+ + KP
Sbjct: 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 1e-11
Identities = 73/325 (22%), Positives = 142/325 (43%), Gaps = 23/325 (7%)
Query: 168 ALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLIT 227
AL++ + E+G+K + ++++ CA+ VF + AG E +V +LI
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515
Query: 228 LSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEM-GDLGEARRIFDEMPER------- 279
+ G+V A + M ++V V+ + I G G R FD + E
Sbjct: 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575
Query: 280 --NEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMH 337
+ ++ ++ +G + A +++ + Y+ K ++I +++ + +
Sbjct: 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635
Query: 338 VHAHVLKIGIEKD-VFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHV----VSWNSMI 392
++ + K G++ D VF S AL+D+ G D F+ + + + VS++S++
Sbjct: 636 IYDDMKKKGVKPDEVFFS-ALVDV---AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691
Query: 393 GGYGLNGQMEEAKELFDN---MPKRNDVS-WSAIISGYLEHKQFDLVFAVFNEMLLSGEI 448
G ++A EL+++ + R VS +A+I+ E Q V +EM G
Sbjct: 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751
Query: 449 PNKSTFSSVLCASASVASLEKGKDL 473
PN T+S +L AS + G DL
Sbjct: 752 PNTITYSILLVASERKDDADVGLDL 776
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-09
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Query: 385 VVSWNSMIGGYGLNGQMEEAKELFDNMPKR----NDVSWSAIISGY 426
VV++N++I GY G++EEA +LF+ M KR N ++S +I G
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-08
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 148 NVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACA 195
+V+++ I G+ + G EALKLF ++ + G+KPN T+S +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 2e-08
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 280 NEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALA 327
+ V+++ +I Y + G EEA +LF +M + KPN +SI++ L
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 38/193 (19%)
Query: 419 WSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVL--CASASVASLEKGKDLHGK 476
++ +IS + + D +F VF+EM+ +G N TF +++ CA A G+
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA------------GQ 522
Query: 477 IIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKES 536
+ K Y + +S +++ R VF+ ++ +SG +
Sbjct: 523 VAKAFGAYGIM----------RSKNVKPDRVVFN-----------ALISACGQSGAVDRA 561
Query: 537 INLFEEM--EKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCV 594
++ EM E I P+ +T+ +++ AC+++G VD+ + + + YNIK YT
Sbjct: 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE-YNIKGTPEVYTIA 620
Query: 595 VDMLSRSGRLSEA 607
V+ S+ G A
Sbjct: 621 VNSCSQKGDWDFA 633
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 5e-07
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 415 NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVL 458
+ V+++ +I GY + + + +FNEM G PN T+S ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 6e-07
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 249 DVVSWTVILDVFIEMGDLGEARRIFDEMPER----NEVSWSVMI 288
DVV++ ++D + + G + EA ++F+EM +R N ++S++I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 386 VSWNSMIGGYGLNGQMEEAKELFDNMPKRN 415
V++NS+I GY G++EEA ELF M ++
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 5e-06
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 86 DLVVHNCMINANIQWGNLEEAQRLFDGMPER----NEVSWTALISGFMK 130
D+V +N +I+ + G +EEA +LF+ M +R N +++ LI G K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 61/283 (21%), Positives = 123/283 (43%), Gaps = 48/283 (16%)
Query: 298 EEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNAL 357
+EAFR + + P S F++++S AS + + + V V + G++ D + L
Sbjct: 423 KEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478
Query: 358 IDLYSKCGETKDGRLVFDSIVEKDV-AHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRN- 415
I +K G+ VF +V V A+V ++ ++I G GQ+ +A + M +N
Sbjct: 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538
Query: 416 ---DVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKD 472
V ++A+IS + D F V EM K+ +
Sbjct: 539 KPDRVVFNALISACGQSGAVDRAFDVLAEM--------KAETHPID-------------- 576
Query: 473 LHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEIS-----WTVMVRGL 527
P + +G AL A +G ++ ++ V+ +M + I +T+ V
Sbjct: 577 ----------PDHITVG-ALMKACANAGQVDRAKEVY-QMIHEYNIKGTPEVYTIAVNSC 624
Query: 528 AESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDK 570
++ G +++++++M+K + P+E+ +++ H+G +DK
Sbjct: 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 5e-05
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 515 KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELT 554
+ +++ ++ G + G +E++ LF EM+K I PN T
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 386 VSWNSMIGGYGLNGQMEEAKELFDNMPKRN 415
V++N++I G G++EEA ELF M +R
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 385 VVSWNSMIGGYGLNGQMEEAKELFDNMP 412
VV++N++I G G+++EA EL D M
Sbjct: 7 VVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 5e-04
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 219 VSVCNSLITLSLKMGEVDLARSVFDRMEKR----DVVSWTVILDVF 260
V N+LI K G+V+ A +F+ M+KR +V ++++++D
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 417 VSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPN 450
V+++ +I G + + + +F EM G P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 282 VSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNT 316
V+++ +I ++G EEA LF++M +P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 59/254 (23%), Positives = 101/254 (39%), Gaps = 62/254 (24%)
Query: 449 PNKSTFSSVL--CASASVASLEKGKDLHG--KIIKL----GFPYDVFLGTALTDTYAKSG 500
P STF+ ++ CAS+ +D+ G ++++L G D L T L T AKSG
Sbjct: 435 PTLSTFNMLMSVCASS--------QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG 486
Query: 501 DIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLF 560
+ D M +F EM + N T +++
Sbjct: 487 KV-------DAM------------------------FEVFHEMVNAGVEANVHTFGALID 515
Query: 561 ACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-----P 615
C+ +G V K + M N+KP+ + ++ +SG + A D + M P
Sbjct: 516 GCARAGQVAKAFGAYGIMRS-KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP 574
Query: 616 FEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH-----PAGYVLLSNIYASAGRW 670
+PD +L+ C N +RA K ++++ E+ P Y + N + G W
Sbjct: 575 IDPDHITVGALMKAC---ANAGQVDRA-KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630
Query: 671 IDAMNVRKLMTEKG 684
A+++ M +KG
Sbjct: 631 DFALSIYDDMKKKG 644
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 57/286 (19%), Positives = 99/286 (34%), Gaps = 79/286 (27%)
Query: 86 DLVVHNCMINANIQWGNLEEAQRLFDGMPER---------NEVSWTALISGFMKHGRVEE 136
D VV N +I+A Q G + R FD + E + ++ AL+ G+V+
Sbjct: 541 DRVVFNALISACGQSGAV---DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597
Query: 137 SMWYFERNPFQNVIS----WTAAICGFVQNGFSFEALKLFLKLLESGVKPNE-------- 184
+ ++ N+ +T A+ Q G AL ++ + + GVKP+E
Sbjct: 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657
Query: 185 ---------------------------VTFSSICKACAEINDFRLGLSVFGLIFKAGFEK 217
V++SS+ AC+ +++ L ++ I
Sbjct: 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717
Query: 218 HVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMP 277
VS N+LIT + ++ A V EM LG P
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLS------------------EMKRLG-------LCP 752
Query: 278 ERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPN-TSCFSIV 322
N +++S+++ + + L Q KPN C I
Sbjct: 753 --NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 282 VSWSVMIARYNQSGYPEEAFRLFRQMTR 309
V+++ +I+ Y ++G EEA LF++M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 712 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.93 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.83 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.82 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.82 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.75 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.63 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.62 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.59 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.58 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.55 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.55 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.54 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.5 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.5 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.5 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.5 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.49 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.49 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.49 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.48 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.45 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.45 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.44 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.42 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.42 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.4 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.39 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.39 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.38 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.38 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.37 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.36 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.33 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.3 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.29 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.29 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.27 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.26 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.25 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.25 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.24 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.22 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.19 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.18 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.17 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.16 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.13 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.13 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.13 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.12 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.11 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.07 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.03 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.03 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.02 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.0 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.98 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.97 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.91 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.91 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.89 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.87 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.78 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.76 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.73 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.71 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.7 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.66 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.64 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.63 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.62 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.58 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.56 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.55 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.54 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.54 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.53 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.53 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.51 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.5 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.5 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.48 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.48 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.44 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.44 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.43 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.41 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.41 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.37 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.33 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.33 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.32 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.31 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.28 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.27 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.26 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.24 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.24 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.23 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.22 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.21 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.2 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.2 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.19 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.18 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.17 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.16 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.11 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.09 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.03 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.99 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.98 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.97 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.97 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.96 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.96 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.93 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.91 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.9 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.87 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.87 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.84 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.84 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.84 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.83 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.79 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.74 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.73 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.69 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.66 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.65 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.65 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.64 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.64 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.61 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.6 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.56 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.56 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.56 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.56 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.55 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.54 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.54 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.53 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.53 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.51 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.47 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.46 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.43 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.41 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.38 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.38 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.38 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.36 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.29 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.24 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.24 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.23 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.23 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.19 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.19 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.15 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.14 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.14 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.1 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.09 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.08 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.03 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.96 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.95 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.92 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.9 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.88 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.84 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.83 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.83 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.81 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.8 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.78 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.78 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.76 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.72 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.68 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.66 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.6 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.58 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.56 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.55 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.51 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.49 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.45 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.44 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.41 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.39 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.32 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.29 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.25 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.21 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.12 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.94 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.75 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.7 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.68 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.66 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.62 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.52 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.43 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.41 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.34 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.31 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.16 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.1 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.08 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.08 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.08 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.04 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.0 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.94 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.94 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.77 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.69 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.6 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.58 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.51 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.46 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.28 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.25 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.24 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.22 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 94.11 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.02 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.94 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.89 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.85 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.73 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.7 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.64 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.64 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.64 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.55 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.48 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.44 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.42 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.41 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.4 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.89 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.85 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.8 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.71 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.63 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.6 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.21 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.19 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.05 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 92.02 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.92 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.9 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.7 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.61 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.58 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.33 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 91.33 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.24 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 91.14 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.14 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.97 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.8 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.6 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.57 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.56 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.25 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.07 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.91 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 89.72 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.66 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 89.37 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.25 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.18 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.95 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.74 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.71 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 88.34 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.14 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.12 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.05 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 87.95 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 87.8 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 87.74 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 87.67 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 87.65 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 87.6 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 87.56 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 87.2 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 87.17 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.16 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.15 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 86.59 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.48 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 86.05 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.9 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.76 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.08 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 84.45 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 84.31 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.96 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 83.67 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.56 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 82.38 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.23 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 82.17 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 82.15 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.11 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 81.88 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.55 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 81.28 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.85 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 80.57 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 80.54 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.44 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 80.39 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-92 Score=778.72 Aligned_cols=670 Identities=28% Similarity=0.517 Sum_probs=503.0
Q ss_pred hhHHHHHhhcCcCCCCCCchhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhh
Q 005136 2 KASLRSLFSINPETSFNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKD 81 (712)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 81 (712)
++|+.+|..| ...|++|+..+|..++++|...+.+..|.+++..+++.|+.++..+.+.++.+|++.|+.+.|..+|++
T Consensus 68 ~~A~~l~~~m-~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~ 146 (857)
T PLN03077 68 EQALKLLESM-QELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGK 146 (857)
T ss_pred HHHHHHHHHH-HhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhc
Confidence 4555566665 555555666666666666655555666666666666666555555566666666666666666666666
Q ss_pred cCCCCcchHHHHHHHHHhcCChHHHHHHHhhCC----CCChhHHHHHHHHHHccCChHHHHHHhhhCC----CCCcccHH
Q 005136 82 LNGFDLVVHNCMINANIQWGNLEEAQRLFDGMP----ERNEVSWTALISGFMKHGRVEESMWYFERNP----FQNVISWT 153 (712)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~ 153 (712)
|.+||..+|+.++.+|++.|++++|..+|++|. .||..||+.++.++++.++++.+.+++..+. .+|+.+||
T Consensus 147 m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n 226 (857)
T PLN03077 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226 (857)
T ss_pred CCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHh
Confidence 655666666666666666666666666665553 2555566666666655555555555554322 34555666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccC
Q 005136 154 AAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMG 233 (712)
Q Consensus 154 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 233 (712)
.+|.+|++.|++++|..+|++|. .||..+|+.+|.+|.+.|++++|.++|++|.+.|+.||..+|+.++.++++.|
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 66666666666666666666554 24555566666666666666666666666666666666666666666666666
Q ss_pred ChHHHHHHHhhcCC----CCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005136 234 EVDLARSVFDRMEK----RDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTR 309 (712)
Q Consensus 234 ~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 309 (712)
+.+.+.+++..+.+ ||..+|+.++.+|++.|++++|.++|++|..+|..+|+.++.+|++.|++++|+++|++|.+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 66666666555543 55556666666666666666666666666556666666666666666666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHH
Q 005136 310 YSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWN 389 (712)
Q Consensus 310 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 389 (712)
.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.++..++++|+++|++.|++++|.++|++|
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m------------ 450 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI------------ 450 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC------------
Confidence 56666666666666666666666666666666666555555555555555555555555555555554
Q ss_pred HHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHH
Q 005136 390 SMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEK 469 (712)
Q Consensus 390 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~ 469 (712)
.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+++.
T Consensus 451 ----------------------~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~ 507 (857)
T PLN03077 451 ----------------------PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMC 507 (857)
T ss_pred ----------------------CCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHH
Confidence 444555555555555555555555999999986 599999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 005136 470 GKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSIT 549 (712)
Q Consensus 470 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 549 (712)
+.+++..+.+.|+.++..+++.|+++|+++|++++|.++|+.+ .+|..+|++++.+|++.|+.++|+++|++|.+.|+.
T Consensus 508 ~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred hHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005136 550 PNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSG 629 (712)
Q Consensus 550 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 629 (712)
||..||+.++.+|.+.|++++|.++|+.|.+.+++.|+..+|++++++|.+.|++++|.+++++|+.+|+..+|..++.+
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~a 666 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNA 666 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999978899999999999999999999999999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCC
Q 005136 630 CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDH 709 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (712)
|..+|+.+.++...+++++++|+++..|..|+++|.+.|+|++|.++.+.|++.|+++.||.|||++.+.+|.|..||..
T Consensus 667 c~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 667 CRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 005136 710 NPK 712 (712)
Q Consensus 710 ~~~ 712 (712)
||+
T Consensus 747 h~~ 749 (857)
T PLN03077 747 HPQ 749 (857)
T ss_pred Ccc
Confidence 995
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-72 Score=619.02 Aligned_cols=618 Identities=18% Similarity=0.248 Sum_probs=578.1
Q ss_pred CCCCcchhhhHHHHHHhcCCChhHhHHHHhhcC----CCCcchHHHHHHHHHhcCChHHHHHHHhhCC----CCChhHHH
Q 005136 51 GIHKERYLTTRLLIMYLGSRKSLEANEIVKDLN----GFDLVVHNCMINANIQWGNLEEAQRLFDGMP----ERNEVSWT 122 (712)
Q Consensus 51 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~ 122 (712)
...++...++.++..|++.|++++|..+|+.+. +|+..+|..++.++.+.+.++.+..++..+. .++...++
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 446677778888888888888888888888873 3777888888888888888888888887654 36778899
Q ss_pred HHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHH
Q 005136 123 ALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRL 202 (712)
Q Consensus 123 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~ 202 (712)
+|+.+|++.|+++.|.++|++|++||+.+||.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|...++++.
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCC----C
Q 005136 203 GLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMP----E 278 (712)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~ 278 (712)
+.+++..+.+.|+.|+..+++.|+.+|++.|+++.|.++|++|.++|..+|+.++.+|++.|++++|.++|++|. .
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999996 4
Q ss_pred CCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHH
Q 005136 279 RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALI 358 (712)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 358 (712)
||..+|+.++.++++.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|. .||..+|+.++
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li 361 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMI 361 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999985 47899999999
Q ss_pred HHHHhcCChHHHHHHHHhhhcCCC-CceeeHHHHHHHHhccCChhhHHHHhhcCCC----CCcccHHHHHHHHHhcCChh
Q 005136 359 DLYSKCGETKDGRLVFDSIVEKDV-AHVVSWNSMIGGYGLNGQMEEAKELFDNMPK----RNDVSWSAIISGYLEHKQFD 433 (712)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~ 433 (712)
.+|++.|++++|.++|++|.+.+. |+..+|+.++.+|++.|+++.+.++++.+.+ ++..+|+.|+.+|++.|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 999999999999999999998886 8999999999999999999999999998874 68889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC
Q 005136 434 LVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP 513 (712)
Q Consensus 434 ~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (712)
+|.++|++|. .+|..+|+.++.+|++.|+.++|..+|.+|.. ++.||..+|..++.+|++.|+++.+.+++..+.
T Consensus 442 ~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 442 KALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred HHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 9999999985 46888999999999999999999999999986 589999999999999999999999999998876
Q ss_pred ----CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchH
Q 005136 514 ----DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGR 589 (712)
Q Consensus 514 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 589 (712)
.++..++++|+.+|++.|+.++|.++|+.+ .||..+|+.++.+|++.|+.++|.++|++|. ..|+.||..
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~-~~g~~Pd~~ 590 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMV-ESGVNPDEV 590 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCcc
Confidence 468889999999999999999999999886 6899999999999999999999999999999 569999999
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 590 HYTCVVDMLSRSGRLSEAEDFINSM----PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
+|+.++.+|.+.|++++|.++|+.| +..|+..+|..++.++.+.|++++|+++++++. ..|+ +.+|..|+.+|.
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~pd-~~~~~aLl~ac~ 668 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-ITPD-PAVWGALLNACR 668 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCCC-HHHHHHHHHHHH
Confidence 9999999999999999999999998 468999999999999999999999999999873 5665 789999999999
Q ss_pred hcCCchhHHHHHHHHHhCCC
Q 005136 666 SAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 666 ~~g~~~eA~~~~~~~~~~~~ 685 (712)
..|+.+.+....+++.+..+
T Consensus 669 ~~~~~e~~e~~a~~l~~l~p 688 (857)
T PLN03077 669 IHRHVELGELAAQHIFELDP 688 (857)
T ss_pred HcCChHHHHHHHHHHHhhCC
Confidence 99999999999988887543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-71 Score=599.02 Aligned_cols=502 Identities=38% Similarity=0.647 Sum_probs=472.9
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHH
Q 005136 146 FQNVISWTAAICGFVQNGFSFEALKLFLKLLESG-VKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNS 224 (712)
Q Consensus 146 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (712)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++.+.+.+++..|.+.|+.|+..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3567799999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHH
Q 005136 225 LITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLF 304 (712)
Q Consensus 225 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 304 (712)
++.+|++.|+++.|.++|+ +|.+||..+|+.++.+|++.|++++|+++|
T Consensus 164 Li~~y~k~g~~~~A~~lf~-------------------------------~m~~~~~~t~n~li~~~~~~g~~~~A~~lf 212 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFD-------------------------------EMPERNLASWGTIIGGLVDAGNYREAFALF 212 (697)
T ss_pred HHHHHhcCCCHHHHHHHHh-------------------------------cCCCCCeeeHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999999999988888 666788889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCc
Q 005136 305 RQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAH 384 (712)
Q Consensus 305 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 384 (712)
++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.|+.+|..++++|+.+|++.|++++|.++|++|... +
T Consensus 213 ~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---~ 289 (697)
T PLN03081 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK---T 289 (697)
T ss_pred HHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC---C
Confidence 9999999999999999999999999999999999999999999999999999999998888888888888777543 2
Q ss_pred eeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 005136 385 VVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASV 464 (712)
Q Consensus 385 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~ 464 (712)
..+|+.++.+|++.|+.++| +++|++|...|+.||..||+.++.+|++.
T Consensus 290 ~vt~n~li~~y~~~g~~~eA-------------------------------~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEA-------------------------------LCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHH-------------------------------HHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 45555555555555555555 99999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 005136 465 ASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEME 544 (712)
Q Consensus 465 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 544 (712)
|+++.|.+++..|.+.|+.|+..+++.|+++|++.|++++|.++|++|.++|..+|+.|+.+|++.|+.++|+++|++|.
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHH
Q 005136 545 KTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWA 624 (712)
Q Consensus 545 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 624 (712)
+.|+.||..||+.++.+|.+.|++++|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.+++++++..|+..+|.
T Consensus 419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~ 498 (697)
T PLN03081 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWA 498 (697)
T ss_pred HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHH
Confidence 99999999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCcccEEEECCEEEEEe
Q 005136 625 SLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFF 704 (712)
Q Consensus 625 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (712)
.++.+|..+|+++.|+.++++++++.|++...|..|+.+|.+.|+|++|.++++.|.++|+++.||+||+++.+.+|.|+
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~ 578 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFF 578 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 005136 705 QKTDHNPK 712 (712)
Q Consensus 705 ~~~~~~~~ 712 (712)
+||..||+
T Consensus 579 ~~d~~h~~ 586 (697)
T PLN03081 579 SGDRLHPQ 586 (697)
T ss_pred cCCCCCcc
Confidence 99999995
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-64 Score=545.24 Aligned_cols=525 Identities=16% Similarity=0.229 Sum_probs=378.9
Q ss_pred CcchhhhHHHHHHhcCCChhHhHHHHhhcCC-----CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHH
Q 005136 54 KERYLTTRLLIMYLGSRKSLEANEIVKDLNG-----FDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGF 128 (712)
Q Consensus 54 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 128 (712)
++...+..++..+++.|++++|.++|+.|.. ++..+++.++.+|.+.|.+++|..+|+.|.+||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3444455555555555666666666665533 23334445555566666666666666666666666666666666
Q ss_pred HccCChHHHHHHhhhCC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHH
Q 005136 129 MKHGRVEESMWYFERNP----FQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGL 204 (712)
Q Consensus 129 ~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 204 (712)
++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 66666666666665543 35666677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcC------CCCcchHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 005136 205 SVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRME------KRDVVSWTVILDVFIEMGDLGEARRIFDEMPE 278 (712)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 278 (712)
++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777776664 24555555555555555555555555555543
Q ss_pred ----CCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHH
Q 005136 279 ----RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFIS 354 (712)
Q Consensus 279 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 354 (712)
|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5667888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhhcCCC-CceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChh
Q 005136 355 NALIDLYSKCGETKDGRLVFDSIVEKDV-AHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFD 433 (712)
Q Consensus 355 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 433 (712)
+.++.+|++.|++++|.++|++|...+. |+..+|+.+|.+|++.|++++|
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeA----------------------------- 738 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA----------------------------- 738 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH-----------------------------
Confidence 8888888888888888888888876554 5555555555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC
Q 005136 434 LVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP 513 (712)
Q Consensus 434 ~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (712)
.++|++|...|+.||..||+.++.+|++.|+++.|.+++.+|.+.|+.|+..+|+.++.++.+ ++++|..+.+.+.
T Consensus 739 --lelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~ 814 (1060)
T PLN03218 739 --LEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVV 814 (1060)
T ss_pred --HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999876542 3555554433322
Q ss_pred CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHH
Q 005136 514 DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTC 593 (712)
Q Consensus 514 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 593 (712)
. |+. .......+..++|+.+|++|.+.|+.||..||+.++.+++..+....+..+++.+. ..+..|+..+|+.
T Consensus 815 ~-----f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~ 887 (1060)
T PLN03218 815 S-----FDS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLST 887 (1060)
T ss_pred h-----hhc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHH
Confidence 1 100 00111122346799999999999999999999999988889999999999999887 4477888999999
Q ss_pred HHHHhhhcCChHHHHHHHHhC---CCCCCH
Q 005136 594 VVDMLSRSGRLSEAEDFINSM---PFEPDS 620 (712)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~---~~~p~~ 620 (712)
+++++.+. .++|..++++| ++.|+.
T Consensus 888 Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 888 LVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 99988432 46899999998 555653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-61 Score=523.01 Aligned_cols=533 Identities=15% Similarity=0.200 Sum_probs=399.7
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCC-----hhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHH
Q 005136 85 FDLVVHNCMINANIQWGNLEEAQRLFDGMPERN-----EVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGF 159 (712)
Q Consensus 85 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 159 (712)
++...|..++..+++.|++++|.++|++|.+++ ..+++.++..|.+.|.+++|..+|+.|..||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 455667777777777777777777777776543 334556666777777777777777777777777777777777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHH
Q 005136 160 VQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLAR 239 (712)
Q Consensus 160 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 239 (712)
++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+.+.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCHH
Q 005136 240 SVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTR--YSFKPNTS 317 (712)
Q Consensus 240 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~ 317 (712)
++|++|.+. -..||..+|+.++.+|++.|++++|.++|++|.. .|+.||..
T Consensus 528 ~lf~~M~~~---------------------------Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v 580 (1060)
T PLN03218 528 GAYGIMRSK---------------------------NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI 580 (1060)
T ss_pred HHHHHHHHc---------------------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH
Confidence 766654321 1236666777777777777777777777777754 46677777
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC-CceeeHHHHHHHHh
Q 005136 318 CFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDV-AHVVSWNSMIGGYG 396 (712)
Q Consensus 318 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 396 (712)
+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|..+|++|.+.+. |+..+|+.++.+|+
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777766654 44455555555555
Q ss_pred ccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHH
Q 005136 397 LNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGK 476 (712)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 476 (712)
+.|++++| .++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++
T Consensus 661 k~G~~eeA-------------------------------~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 661 HAGDLDKA-------------------------------FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred hCCCHHHH-------------------------------HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 54444444 89999999999999999999999999999999999999999
Q ss_pred HHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC----CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 005136 477 IIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP----DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE 552 (712)
Q Consensus 477 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 552 (712)
|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.+++.+|.+.|+.||.
T Consensus 710 M~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9888889999999999999999999999999998875 578888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC---CCCCCHHHHHHHHHH
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM---PFEPDSNAWASLLSG 629 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~ 629 (712)
.+|+.++..|. +.+++|..+.+.+. .+ .+ +......+..++|..+|++| ++.|+..+|..++.+
T Consensus 790 ~tynsLIglc~--~~y~ka~~l~~~v~-~f--~~--------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~c 856 (1060)
T PLN03218 790 VMCRCITGLCL--RRFEKACALGEPVV-SF--DS--------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGC 856 (1060)
T ss_pred HHHHHHHHHHH--HHHHHHhhhhhhhh-hh--hc--------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 99988887654 24666665554443 11 11 11122234456799999998 678999999999988
Q ss_pred HhhcCCHHHHHHHHHHHh-ccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCc
Q 005136 630 CKTYKNEQIAERAVKNLW-KLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGG 690 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~ 690 (712)
+...+..+.+..+++.+. .-.+.+..+|..|+..+.+. .++|..++++|.+.|+.|...
T Consensus 857 l~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 857 LQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 888888888888887654 33455678899999877322 368999999999999988765
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-60 Score=510.22 Aligned_cols=466 Identities=24% Similarity=0.387 Sum_probs=427.7
Q ss_pred CCcchhhhHHHHHHhcCCChhHhHHHHhhcC-----CCCcchHHHHHHHHHhcCChHHHHHHHhhCC----CCChhHHHH
Q 005136 53 HKERYLTTRLLIMYLGSRKSLEANEIVKDLN-----GFDLVVHNCMINANIQWGNLEEAQRLFDGMP----ERNEVSWTA 123 (712)
Q Consensus 53 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ 123 (712)
..+...++.++..+.+.|++.+|.++|+.+. .||..+|+.++.++++.++++.|..++..|. .+|..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456688999999999999999999999883 4788999999999999999999999999886 479999999
Q ss_pred HHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHH
Q 005136 124 LISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLG 203 (712)
Q Consensus 124 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 203 (712)
|+.+|++.|++++|.++|++|+.||..+||.+|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|...|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCcee
Q 005136 204 LSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVS 283 (712)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 283 (712)
.+++..+.+.|+.+|..+++.|+.+|++.|++++|.++|+ +|.++|+.+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~-------------------------------~m~~~~~vt 292 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD-------------------------------GMPEKTTVA 292 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHH-------------------------------hCCCCChhH
Confidence 9999999999999999999999999999999999999888 566678888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 005136 284 WSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSK 363 (712)
Q Consensus 284 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 363 (712)
||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|++
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005136 364 CGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEML 443 (712)
Q Consensus 364 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 443 (712)
.|++++|.++|++|.+. +..+||.||.+|++.|+.++| .++|++|.
T Consensus 373 ~G~~~~A~~vf~~m~~~---d~~t~n~lI~~y~~~G~~~~A-------------------------------~~lf~~M~ 418 (697)
T PLN03081 373 WGRMEDARNVFDRMPRK---NLISWNALIAGYGNHGRGTKA-------------------------------VEMFERMI 418 (697)
T ss_pred CCCHHHHHHHHHhCCCC---CeeeHHHHHHHHHHcCCHHHH-------------------------------HHHHHHHH
Confidence 88888888888877643 356666666666666666665 99999999
Q ss_pred HCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH-cCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC-CCCcchHH
Q 005136 444 LSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIK-LGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP-DKNEISWT 521 (712)
Q Consensus 444 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 521 (712)
+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++. +|+..+|+
T Consensus 419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~ 498 (697)
T PLN03081 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWA 498 (697)
T ss_pred HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHH
Confidence 999999999999999999999999999999999986 6999999999999999999999999999999987 68999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC
Q 005136 522 VMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP 586 (712)
Q Consensus 522 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 586 (712)
+++.+|...|+++.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|.+ .|+..
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~~k 561 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KGLSM 561 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cCCcc
Confidence 999999999999999999999976 5665 57899999999999999999999999984 46654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=382.86 Aligned_cols=670 Identities=13% Similarity=0.082 Sum_probs=418.0
Q ss_pred hhHHHHHhhcCcCCCCCCchhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhh
Q 005136 2 KASLRSLFSINPETSFNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKD 81 (712)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 81 (712)
++|.+.|+++ ... .|.+...+..+...+...|++++|..+++++++..+ .+...+..+...+...|++++|...|++
T Consensus 142 ~~A~~~~~~a-~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 218 (899)
T TIGR02917 142 ELAQKSYEQA-LAI-DPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP-GNVDALLLKGDLLLSLGNIELALAAYRK 218 (899)
T ss_pred HHHHHHHHHH-Hhc-CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5666666665 222 334555666666666777777777777776666543 3555566666666667777777766666
Q ss_pred c---CCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHH----------------------------------
Q 005136 82 L---NGFDLVVHNCMINANIQWGNLEEAQRLFDGMPER---NEVSW---------------------------------- 121 (712)
Q Consensus 82 ~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~---------------------------------- 121 (712)
. .+.+..++..++..+...|++++|...++.+.+. +...+
T Consensus 219 a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 298 (899)
T TIGR02917 219 AIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPAL 298 (899)
T ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHH
Confidence 5 2234455666666666666666666666555331 11122
Q ss_pred HHHHHHHHccCChHHHHHHhhhCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccc
Q 005136 122 TALISGFMKHGRVEESMWYFERNP---FQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEIN 198 (712)
Q Consensus 122 ~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 198 (712)
..+...+...|++++|...|++.. +.+...+..+...+.+.|++++|...++.+.+.+ +.+...+..+...+...|
T Consensus 299 ~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 377 (899)
T TIGR02917 299 LLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALG 377 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCC
Confidence 222333344444444444444321 1223344444555555555555555555555432 223445555555555556
Q ss_pred chHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHhh
Q 005136 199 DFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKR---DVVSWTVILDVFIEMGDLGEARRIFDE 275 (712)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~ 275 (712)
++++|.++++.+.+.. +.+...+..+...+...|++++|.+.++++.+. .......++..+.+.|++++|..+++.
T Consensus 378 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 456 (899)
T TIGR02917 378 DFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKK 456 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6666666655555443 223344455555555555555555555555431 122334455555666666666666665
Q ss_pred CCC---CCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHH
Q 005136 276 MPE---RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVF 352 (712)
Q Consensus 276 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 352 (712)
+.. .++.+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..
T Consensus 457 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 534 (899)
T TIGR02917 457 LEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLR 534 (899)
T ss_pred HHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHH
Confidence 543 244456666666667777777777777666522 2234455556666666677777777777666543 23455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC---CCcccHHHHHHHHHhc
Q 005136 353 ISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK---RNDVSWSAIISGYLEH 429 (712)
Q Consensus 353 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 429 (712)
++..+...+...|+.++|...++++...++.+...+..++..+...|++++|..+++.+.+ .+..+|..++.++...
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 6666667777777777777777777666666666666777777777777777777776653 2455677777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHh
Q 005136 430 KQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVF 509 (712)
Q Consensus 430 ~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 509 (712)
|++++|...|+++.+.. +.+...+..+...+...|++++|..++.++.+.. +.+...+..++..+...|++++|..++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777776643 3345566666677777777777777777776543 344566667777777777777777777
Q ss_pred ccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC
Q 005136 510 DRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP 586 (712)
Q Consensus 510 ~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 586 (712)
+.+.+ .+...+..+...+...|++++|++.++++... .|+..++..+..++...|++++|.+.++.+.+. .|
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~~ 767 (899)
T TIGR02917 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT---HP 767 (899)
T ss_pred HHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CC
Confidence 76653 34445666777777778888888888777773 455566667777777778888888777777632 34
Q ss_pred -chHHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 005136 587 -NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF-EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNI 663 (712)
Q Consensus 587 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 663 (712)
+...+..++..|...|++++|...|+++ .. +++...+..+...+...|+ .+|..+++++++..|+++.++..++.+
T Consensus 768 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~ 846 (899)
T TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWL 846 (899)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 6677777777888888888888888776 22 3346666777777777777 668888888887778877777788888
Q ss_pred HHhcCCchhHHHHHHHHHhCCCc
Q 005136 664 YASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 664 ~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
+.+.|++++|+++++++++.++.
T Consensus 847 ~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 847 LVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCC
Confidence 88888888888888887776543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=383.19 Aligned_cols=667 Identities=14% Similarity=0.090 Sum_probs=540.5
Q ss_pred hhHHHHHhhcCcCCCCCCchhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHh-
Q 005136 2 KASLRSLFSINPETSFNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVK- 80 (712)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~- 80 (712)
++|.+.++++ .. ..|++...+..+...+...|+++.|...++++++..+. +..++..++..+...|++++|...++
T Consensus 176 ~~A~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~ 252 (899)
T TIGR02917 176 DEARALIDEV-LT-ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN-NPAVLLALATILIEAGEFEEAEKHADA 252 (899)
T ss_pred HHHHHHHHHH-HH-hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555554 22 23444455555555555555555555555555554432 34444445555555555555554444
Q ss_pred ---------------------------------hcCC--CC-cchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHH
Q 005136 81 ---------------------------------DLNG--FD-LVVHNCMINANIQWGNLEEAQRLFDGMPE---RNEVSW 121 (712)
Q Consensus 81 ---------------------------------~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 121 (712)
+... |+ ...+..+..++...|++++|...|+++.+ .+...+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 332 (899)
T TIGR02917 253 LLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQAR 332 (899)
T ss_pred HHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 4321 11 22333445556667777777777776653 245567
Q ss_pred HHHHHHHHccCChHHHHHHhhhCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccc
Q 005136 122 TALISGFMKHGRVEESMWYFERNP---FQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEIN 198 (712)
Q Consensus 122 ~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 198 (712)
..+...+.+.|++++|...+++.. +.+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|
T Consensus 333 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 411 (899)
T TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQG 411 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCC
Confidence 788889999999999999998754 3456788999999999999999999999998764 235667788888999999
Q ss_pred chHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHhh
Q 005136 199 DFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEK---RDVVSWTVILDVFIEMGDLGEARRIFDE 275 (712)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 275 (712)
++++|...++.+.+... ........++..+.+.|+++.|..+++++.+ ++..++..+...+...|++++|...|++
T Consensus 412 ~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (899)
T TIGR02917 412 DPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEK 490 (899)
T ss_pred ChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999988763 3345566788889999999999999999875 4566899999999999999999999998
Q ss_pred CCC---CCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHH
Q 005136 276 MPE---RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVF 352 (712)
Q Consensus 276 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 352 (712)
+.+ .+...+..+...+...|++++|.+.|+.+...+ +.+..++..+...+.+.|+.++|...+..+...+ +.+..
T Consensus 491 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 568 (899)
T TIGR02917 491 ALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIE 568 (899)
T ss_pred HHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchh
Confidence 764 345567788889999999999999999998743 4467788889999999999999999999998764 34667
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC---CCcccHHHHHHHHHhc
Q 005136 353 ISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK---RNDVSWSAIISGYLEH 429 (712)
Q Consensus 353 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 429 (712)
.+..++..|...|++++|..+++.+.+..+.+...|..+...+...|++++|+..++.+.+ .++..+..++.++...
T Consensus 569 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM 648 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 7888999999999999999999999988888888999999999999999999999998763 3566789999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHh
Q 005136 430 KQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVF 509 (712)
Q Consensus 430 ~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 509 (712)
|++++|...|+++.... +.+..++..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|
T Consensus 649 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 649 KNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999998763 4567888999999999999999999999998875 567778888999999999999999999
Q ss_pred ccCC--CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-
Q 005136 510 DRMP--DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP- 586 (712)
Q Consensus 510 ~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p- 586 (712)
+.+. .|+..++..++.++...|++++|.+.++++.+. .+.+...+..+...|...|++++|..+|+++.+. .|
T Consensus 727 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~ 802 (899)
T TIGR02917 727 RKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK---APD 802 (899)
T ss_pred HHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh---CCC
Confidence 9876 355577888899999999999999999999985 2445678888899999999999999999999843 45
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+...+..++..+...|+ .+|+.+++++ ...|+ +..+..+...+...|++++|...++++++..|.++.++..++.++
T Consensus 803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 881 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALAL 881 (899)
T ss_pred CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 78889999999999999 8899999987 44444 566777888899999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHh
Q 005136 665 ASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 665 ~~~g~~~eA~~~~~~~~~ 682 (712)
.+.|++++|++++++|++
T Consensus 882 ~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 882 LATGRKAEARKELDKLLN 899 (899)
T ss_pred HHcCCHHHHHHHHHHHhC
Confidence 999999999999999864
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-28 Score=277.97 Aligned_cols=631 Identities=12% Similarity=0.035 Sum_probs=442.8
Q ss_pred hHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcCC--CCcc-hH---------
Q 005136 23 TCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNG--FDLV-VH--------- 90 (712)
Q Consensus 23 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~-~~--------- 90 (712)
....-++.+...++.+.|.+.+.+++...+. ++.++..++..+...|+.++|.+.+++..+ |+.. ..
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Confidence 3455666677888888898888888877644 677778888888899999999988888733 3322 11
Q ss_pred -------HHHHHHHHhcCChHHHHHHHhhCCCCChhHHH----HHHHHHHccCChHHHHHHhhhCCC---CCcccHHHHH
Q 005136 91 -------NCMINANIQWGNLEEAQRLFDGMPERNEVSWT----ALISGFMKHGRVEESMWYFERNPF---QNVISWTAAI 156 (712)
Q Consensus 91 -------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li 156 (712)
..+...+...|++++|...|+++.+.++.... .+.......|+.++|++.++++.. .+...+..+.
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA 188 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLA 188 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 22334567788888888888887653222111 111222345888888888877543 3455677778
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChH
Q 005136 157 CGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVD 236 (712)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 236 (712)
..+...|++++|+..++++.+.... +...-......+...+....+.. .+...+..+-.....+
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~-~~~aa~~~~~~l~~~~~~~~~~~---------------~l~~~l~~~p~~~~~~ 252 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAG-RDAAAQLWYGQIKDMPVSDASVA---------------ALQKYLQVFSDGDSVA 252 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccCCChhhHH---------------HHHHHHHHCCCchHHH
Confidence 8888888888888888887653210 00000000111111111112222 2222222222223334
Q ss_pred HHHHHHhhcCC--CCcch-HHHHHHHHHhcCCHHHHHHHHhhCCC---CCceeHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005136 237 LARSVFDRMEK--RDVVS-WTVILDVFIEMGDLGEARRIFDEMPE---RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRY 310 (712)
Q Consensus 237 ~a~~~~~~~~~--~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 310 (712)
.|...+.+... .++.. .......+...|++++|+..|++..+ .+..++..+...+.+.|++++|+..|++..+.
T Consensus 253 ~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~ 332 (1157)
T PRK11447 253 AARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL 332 (1157)
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555544322 11111 12334556677888888888877654 35567778888888888888888888888763
Q ss_pred CCCC-CHHHH------------HHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhh
Q 005136 311 SFKP-NTSCF------------SIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSI 377 (712)
Q Consensus 311 ~~~p-~~~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 377 (712)
.-.. ....+ ......+.+.|++++|...++.+.+.. +.+...+..+..++...|++++|+..|+++
T Consensus 333 ~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~a 411 (1157)
T PRK11447 333 DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQA 411 (1157)
T ss_pred CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3111 11111 122345667899999999999988874 335667778889999999999999999999
Q ss_pred hcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCC------------cccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 005136 378 VEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRN------------DVSWSAIISGYLEHKQFDLVFAVFNEMLLS 445 (712)
Q Consensus 378 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 445 (712)
.+..+.+..++..+...+. .++.++|+..++.+.... ...+..+...+...|++++|+..|++.++.
T Consensus 412 L~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~ 490 (1157)
T PRK11447 412 LRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL 490 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9888777777777777774 457889988888776321 224556778888999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCC----c----
Q 005136 446 GEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKN----E---- 517 (712)
Q Consensus 446 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---- 517 (712)
. +-+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+.... .
T Consensus 491 ~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~ 568 (1157)
T PRK11447 491 D-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA 568 (1157)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH
Confidence 4 3355677778889999999999999999988753 3345555555666778899999999999886421 1
Q ss_pred -----chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHH
Q 005136 518 -----ISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHY 591 (712)
Q Consensus 518 -----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~ 591 (712)
..+..+...+...|+.++|+++++. .+++...+..+...+.+.|++++|+..|+++.+ ..| +...+
T Consensus 569 ~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~ 640 (1157)
T PRK11447 569 QRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADAR 640 (1157)
T ss_pred HHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHH
Confidence 1123456678899999999999872 344556677888899999999999999999983 367 78899
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc------hHHHHHHH
Q 005136 592 TCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA------GYVLLSNI 663 (712)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~ 663 (712)
..++.+|...|++++|++.++.. ...|+ ...+..+..++...|++++|.+.++++++..|+++. ++..++.+
T Consensus 641 ~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~ 720 (1157)
T PRK11447 641 LGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARF 720 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHH
Confidence 99999999999999999999987 34454 556667777888999999999999999998776553 66778999
Q ss_pred HHhcCCchhHHHHHHHHHh
Q 005136 664 YASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 664 ~~~~g~~~eA~~~~~~~~~ 682 (712)
+...|++++|+..+++.+.
T Consensus 721 ~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 721 EAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999864
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-26 Score=264.74 Aligned_cols=629 Identities=10% Similarity=0.016 Sum_probs=370.0
Q ss_pred hhHHHHHhhcCcCCCCCCchhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchh---------------hhHHHHHH
Q 005136 2 KASLRSLFSINPETSFNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYL---------------TTRLLIMY 66 (712)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------------~~~l~~~~ 66 (712)
+.|.+.+.++ ..--|.++..+..+++.+...|+.++|.+.++++.+..++..... ...+++.+
T Consensus 45 d~a~~~l~kl--~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll 122 (1157)
T PRK11447 45 DLVRQSLYRL--ELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLL 122 (1157)
T ss_pred HHHHHHHHHH--HccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 5677778877 233456778888999999999999999999999999885432211 13345578
Q ss_pred hcCCChhHhHHHHhhcCC--CCcch--HHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHccCChHHHHH
Q 005136 67 LGSRKSLEANEIVKDLNG--FDLVV--HNCMINANIQWGNLEEAQRLFDGMPER---NEVSWTALISGFMKHGRVEESMW 139 (712)
Q Consensus 67 ~~~~~~~~a~~~~~~~~~--~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~ 139 (712)
...|++++|...|++..+ |+... ...........|+.++|...|+++.+. +...+..+...+.+.|++++|..
T Consensus 123 ~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~ 202 (1157)
T PRK11447 123 ATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFA 202 (1157)
T ss_pred HhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 999999999999999843 22221 111122223469999999999998863 45578889999999999999999
Q ss_pred HhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCC
Q 005136 140 YFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNE-VTFSSICKACAEINDFRLGLSVFGLIFKAGFEKH 218 (712)
Q Consensus 140 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 218 (712)
.++++...... +...+...++.+...+..|.. ..+...+..+......+.+...+.........|.
T Consensus 203 ~l~~~~~~~~~-------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 203 VLEQMAKSPAG-------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHHHhhCCCc-------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 99886432110 001111111111111111111 1111112222222222333333333322211111
Q ss_pred ccHHHHHHHHHHccCChHHHHHHHhhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHhhCCC--CCce---eHH-----
Q 005136 219 VSVCNSLITLSLKMGEVDLARSVFDRMEK--R-DVVSWTVILDVFIEMGDLGEARRIFDEMPE--RNEV---SWS----- 285 (712)
Q Consensus 219 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~---~~~----- 285 (712)
.. .......+...|++++|...|++..+ | +...+..+...+.+.|++++|+..|++..+ |+.. .|.
T Consensus 270 ~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 270 FR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred hH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 11 11222333444455555555444433 1 233444444444455555555554444432 1110 011
Q ss_pred -------HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHH
Q 005136 286 -------VMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALI 358 (712)
Q Consensus 286 -------~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 358 (712)
.....+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.++.+.+.. +.+...+..+.
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~ 426 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLA 426 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 11223445566666666666655521 1233444445555555566666666666655542 12233444444
Q ss_pred HHHHhcCChHHHHHHHHhhhcCCC---------CceeeHHHHHHHHhccCChhhHHHHhhcCCC--C-CcccHHHHHHHH
Q 005136 359 DLYSKCGETKDGRLVFDSIVEKDV---------AHVVSWNSMIGGYGLNGQMEEAKELFDNMPK--R-NDVSWSAIISGY 426 (712)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~ 426 (712)
..|. .++.++|..+++.+..... -....+..+...+...|++++|++.+++..+ | ++..+..+...|
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL 505 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4443 3345556555554432211 0122344555556666666666666665543 2 333455566666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCch---------hhHHHHHHHHH
Q 005136 427 LEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDV---------FLGTALTDTYA 497 (712)
Q Consensus 427 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~ 497 (712)
.+.|++++|...++++.... +.+...+..+...+...++.++|...++.+......+.. ..+..+...+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 66666666677776666532 223333333333445566666666666554322111111 12234567788
Q ss_pred hcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHH
Q 005136 498 KSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFN 576 (712)
Q Consensus 498 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 576 (712)
..|+.++|..+++.- ..+...+..+...+.+.|++++|++.|++..+. .| +...+..+...+...|++++|++.++
T Consensus 585 ~~G~~~eA~~~l~~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 585 DSGKEAEAEALLRQQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HCCCHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999843 345567788899999999999999999999984 55 45778889999999999999999999
Q ss_pred hcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCC---C----CHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 005136 577 SMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFE---P----DSNAWASLLSGCKTYKNEQIAERAVKNLW 647 (712)
Q Consensus 577 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 647 (712)
.+. ...| +......++.++...|++++|.++++++ ... | +...+..+...+...|+.++|+..+++++
T Consensus 662 ~ll---~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 662 KLP---ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHh---ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 887 3456 5677788899999999999999999987 222 2 12345556777889999999999999998
Q ss_pred c---cCCCCCch
Q 005136 648 K---LAEEHPAG 656 (712)
Q Consensus 648 ~---~~p~~~~~ 656 (712)
. +.|..|..
T Consensus 739 ~~~~~~~~~p~~ 750 (1157)
T PRK11447 739 VASGITPTRPQD 750 (1157)
T ss_pred hhcCCCCCCCCC
Confidence 5 34554443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-25 Score=242.94 Aligned_cols=619 Identities=9% Similarity=-0.022 Sum_probs=428.6
Q ss_pred ccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcCC--CCcchHHHHHHHHHhcCChHHHHHHH
Q 005136 33 SQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNG--FDLVVHNCMINANIQWGNLEEAQRLF 110 (712)
Q Consensus 33 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~ 110 (712)
..|++.+|...+..+++..+.- ..++..|+..|...|+.++|+..+++... |+-..|..++..+ +++++|..++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 3488999999999999888764 78888899999999999999999998844 3323333333222 8888999999
Q ss_pred hhCCC--C-ChhHHHHHHHH--------HHccCChHHHHHHhhhCCCC--CcccHHHH-HHHHHhcCChhHHHHHHHHHH
Q 005136 111 DGMPE--R-NEVSWTALISG--------FMKHGRVEESMWYFERNPFQ--NVISWTAA-ICGFVQNGFSFEALKLFLKLL 176 (712)
Q Consensus 111 ~~~~~--~-~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~ 176 (712)
+++.+ | +..++..+... |.+.+...++++ .+...+ +..+.... ...|.+.|+|++|++++.++.
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 98875 2 34555555555 777766666666 333333 34434444 888999999999999999999
Q ss_pred HcCCCCCHhhHHHHHHHHhc-ccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCC-----CCc
Q 005136 177 ESGVKPNEVTFSSICKACAE-INDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEK-----RDV 250 (712)
Q Consensus 177 ~~g~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~ 250 (712)
+.+.. +......+..++.. .++ +.+..+++. .++.++.....++..+.+.|+.+.|.++++++.. |+.
T Consensus 210 k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 210 QQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred hcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 87543 44445666667666 355 666666442 3346778888899999999999999999998874 333
Q ss_pred chHHHHHHHHHhcCCHH-HHHHHHhh-CCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-
Q 005136 251 VSWTVILDVFIEMGDLG-EARRIFDE-MPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALA- 327 (712)
Q Consensus 251 ~~~~~ll~~~~~~~~~~-~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~- 327 (712)
.+| +.-+.+.+... .|..-|.+ ....-....-.++..+.+.++++.+.++.. +.|..... .+....
T Consensus 284 ~~~---~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~r~~~~ 352 (987)
T PRK09782 284 KSW---LYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEML--EERYAVS 352 (987)
T ss_pred HHH---HHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHH--HHHHhhc
Confidence 333 22233433332 11111111 000011122333666777777775554421 33433322 222222
Q ss_pred -ccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC---CceeeHHHHHHHHhccCC---
Q 005136 328 -SLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDV---AHVVSWNSMIGGYGLNGQ--- 400 (712)
Q Consensus 328 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~--- 400 (712)
..+...++...+..+.+.. +-+......+.-...+.|+.++|..+|+....... .+....+.++..|.+.+.
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred cccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 3356666666666666542 22444444555556777888888888887766321 223344456666666555
Q ss_pred hhhHHHHhh-------------------------cCCC---C--CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 005136 401 MEEAKELFD-------------------------NMPK---R--NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPN 450 (712)
Q Consensus 401 ~~~a~~~~~-------------------------~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 450 (712)
..++..+.. .... + +...|..+..++.. +++++|...+.+.... .|+
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd 508 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPD 508 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCc
Confidence 333333211 1111 2 45567888888877 8899999988887765 366
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHH---HHH
Q 005136 451 KSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMV---RGL 527 (712)
Q Consensus 451 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~ 527 (712)
......+...+...|++++|...++++... +|+......+...+.+.|++++|...++...+.++....... ...
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l 586 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQR 586 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 555445555667899999999999987654 444445667778889999999999999988765444333333 333
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHH
Q 005136 528 AESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSE 606 (712)
Q Consensus 528 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 606 (712)
...|++++|+..+++..+ +.|+...+..+..++.+.|++++|+..|++.. ...| +...+..++.++...|++++
T Consensus 587 ~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 587 YIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 445999999999999998 67888888899999999999999999999998 4577 67888999999999999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 607 AEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 607 A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
|+..+++. ...|+ ...+..+..++...|++++|+..+++++++.|++..+....+++..+..+++.|.+.+++.-.-+
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999987 55564 67788888889999999999999999999999999999999999999999999999888776544
Q ss_pred C
Q 005136 685 L 685 (712)
Q Consensus 685 ~ 685 (712)
+
T Consensus 742 ~ 742 (987)
T PRK09782 742 F 742 (987)
T ss_pred c
Confidence 3
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-24 Score=229.07 Aligned_cols=590 Identities=11% Similarity=0.035 Sum_probs=418.6
Q ss_pred HHHhcCCChhHhHHHHhhcC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCh--hHHHHHHHHHHccCChHHHH
Q 005136 64 IMYLGSRKSLEANEIVKDLN---GFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNE--VSWTALISGFMKHGRVEESM 138 (712)
Q Consensus 64 ~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~ 138 (712)
..+...|++++|...|++.. +.+..++..+...+...|+.++|+..+++..+.++ ..+..++..+ +++++|.
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHH
Confidence 34455599999999999873 34567889999999999999999999999876433 3333333222 8999999
Q ss_pred HHhhhCC---CCCcccHHHHHHH--------HHhcCChhHHHHHHHHHHHcCCCCCHhhHHHH-HHHHhcccchHHHHHH
Q 005136 139 WYFERNP---FQNVISWTAAICG--------FVQNGFSFEALKLFLKLLESGVKPNEVTFSSI-CKACAEINDFRLGLSV 206 (712)
Q Consensus 139 ~~~~~~~---~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~~~~~~a~~~ 206 (712)
.+++++. +.+...+..+... |.+. ++|.+.++ .......|+....... .+.+...++++.|...
T Consensus 129 ~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 129 TTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9998864 2345555555555 5555 45555554 3333344455555555 8899999999999999
Q ss_pred HHHHHHhCCCCCccHHHHHHHHHHc-cCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC
Q 005136 207 FGLIFKAGFEKHVSVCNSLITLSLK-MGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPE-----RN 280 (712)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~ 280 (712)
+..+.+.+ +.+......|..+|.. .++ +.+..+++...+.++..+..+...+.+.|+.++|..+++++.. |+
T Consensus 205 L~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 205 YNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 99999987 4445556677777877 466 8888887765567888899999999999999999999999874 33
Q ss_pred ceeHHHHHHHHHhcCChh-HHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHH
Q 005136 281 EVSWSVMIARYNQSGYPE-EAFRLFRQMTRYSFKPNTS-CFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALI 358 (712)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 358 (712)
..+|--+ +.+.+... .|..-|.+ ...++.. ....++..+.+.+.++.+.++.. +.|..... .+
T Consensus 283 ~~~~~~~---l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~ 347 (987)
T PRK09782 283 EKSWLYL---LSKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEML--EE 347 (987)
T ss_pred cHHHHHH---HHhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHH--HH
Confidence 3333333 34444332 11111111 0111111 12223566677788886665522 33333332 33
Q ss_pred HHH--HhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC-C-C----cccHHHHHHHHHhcC
Q 005136 359 DLY--SKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK-R-N----DVSWSAIISGYLEHK 430 (712)
Q Consensus 359 ~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~----~~~~~~l~~~~~~~~ 430 (712)
+.. ...+...++...+..+....+.+......+.-...+.|+.++|.++++.... + + ......++..|.+.+
T Consensus 348 r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 427 (987)
T PRK09782 348 RYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHP 427 (987)
T ss_pred HHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCC
Confidence 322 2347778888888888887666666666666677889999999999998875 2 2 224457778887776
Q ss_pred C---hhHHHHH------------HH----------HHHH-CCC-CC--CHHHHHHHHHHHhccCchHHHHHHHHHHHHcC
Q 005136 431 Q---FDLVFAV------------FN----------EMLL-SGE-IP--NKSTFSSVLCASASVASLEKGKDLHGKIIKLG 481 (712)
Q Consensus 431 ~---~~~a~~~------------~~----------~~~~-~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 481 (712)
. ..++..+ .. .... .+. ++ +...+..+..++.. ++.++|...+.+.....
T Consensus 428 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~ 506 (987)
T PRK09782 428 YLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ 506 (987)
T ss_pred cccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC
Confidence 6 3343333 11 1111 112 23 45566666666655 78888999887777653
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHhccCCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHH
Q 005136 482 FPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD--KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE-LTILSV 558 (712)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l 558 (712)
|+......+...+...|++++|...++++.. ++...+..+...+.+.|+.++|...+++.++. .|+. ..+..+
T Consensus 507 --Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~L 582 (987)
T PRK09782 507 --PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWL 582 (987)
T ss_pred --CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHH
Confidence 4444444455556789999999999997763 44556777788899999999999999999985 4544 333344
Q ss_pred HHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCH
Q 005136 559 LFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNE 636 (712)
Q Consensus 559 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~ 636 (712)
.......|++++|...+++.. ...|+...+..++.++.+.|++++|...+++. ...|+ ...+..+...+...|+.
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 445566799999999999998 45788889999999999999999999999998 55665 56667777789999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 637 QIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 637 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
++|+..++++++..|+++.++..++.++...|++++|+..+++.++..+
T Consensus 660 eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 660 AQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999988653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-23 Score=196.57 Aligned_cols=439 Identities=15% Similarity=0.212 Sum_probs=361.2
Q ss_pred HHHHHHHHHccCChHHHHHHHhhcCCCCc---chHHHHHHHHHhcCCHHHHHHHHhhCCCC---CceeHHHHHHHHHhcC
Q 005136 222 CNSLITLSLKMGEVDLARSVFDRMEKRDV---VSWTVILDVFIEMGDLGEARRIFDEMPER---NEVSWSVMIARYNQSG 295 (712)
Q Consensus 222 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~ 295 (712)
...|..-..+.|++..|.+....+-..|. ...-.+-.++.+..+++....--....+. -..+|..+...+-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 34555566678888888888776654222 22223334555555565554433333332 3458889999999999
Q ss_pred ChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHH-HHHHHHHHHHhcCChHHHHHH
Q 005136 296 YPEEAFRLFRQMTRYSFKP-NTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVF-ISNALIDLYSKCGETKDGRLV 373 (712)
Q Consensus 296 ~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~ 373 (712)
++++|+.+|+.+++ ++| ....|..+..++...|+.+.|.+.+.+.++.+ |+.. ..+.+.......|++.+|...
T Consensus 131 ~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 131 QLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999998 455 56788999999999999999999999988764 5543 344566677788999999999
Q ss_pred HHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 005136 374 FDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRN---DVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPN 450 (712)
Q Consensus 374 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 450 (712)
+.+..+..+.-..+|+.|...+-.+|+.-.|+..|++..+-| ...|-.|...|...+.+++|...|.+.... .|+
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn 284 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPN 284 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCc
Confidence 999998888888999999999999999999999999988654 457999999999999999999999998774 455
Q ss_pred -HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHH
Q 005136 451 -KSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRG 526 (712)
Q Consensus 451 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 526 (712)
...+..+...|-.+|.++.|+..+++..+.. +.=+..|+.|..++...|++.+|...+++... ....+.+.|...
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 4567777778889999999999999998753 22356899999999999999999999998773 345578889999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCCh
Q 005136 527 LAESGYAKESINLFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRL 604 (712)
Q Consensus 527 ~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 604 (712)
+...|.+++|..+|....+ +.|.. ..++.|...|-..|++++|+..|++.. .++|+ ...++.++..|-..|+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhH
Confidence 9999999999999999998 77765 678899999999999999999999998 67894 77999999999999999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchh
Q 005136 605 SEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWID 672 (712)
Q Consensus 605 ~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 672 (712)
+.|...+.+. .+.|. ......+...|...|+..+|++.++.+++++||.|.++..|+-++.--..|.+
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999987 67787 66778888889999999999999999999999999999999988765555554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-21 Score=194.18 Aligned_cols=516 Identities=13% Similarity=0.100 Sum_probs=302.7
Q ss_pred HhcCChhHHHHHHHHHHHcC--CCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCC---
Q 005136 160 VQNGFSFEALKLFLKLLESG--VKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGE--- 234 (712)
Q Consensus 160 ~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--- 234 (712)
...|++..|+.+|....... .+||+. ..+..++.+.++.+.|...|...++.++ .++.++-.|...-....+
T Consensus 175 ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s 251 (1018)
T KOG2002|consen 175 YNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDS 251 (1018)
T ss_pred hccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHH
Confidence 34566666666666654432 223332 1223444566666666666666665542 233333333333223333
Q ss_pred hHHHHHHHhhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCC------ceeHHHHHHHHHhcCChhHHHHHHH
Q 005136 235 VDLARSVFDRMEK---RDVVSWTVILDVFIEMGDLGEARRIFDEMPERN------EVSWSVMIARYNQSGYPEEAFRLFR 305 (712)
Q Consensus 235 ~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (712)
+..+..++...-+ .+++..+.|.+.+.-.|++..++.+...+.... ...|-.+.++|-..|++++|...|.
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 2333333333322 455666666666666677666666666554321 1235556667777777777777776
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC----ChHHHHHHHHhhhc
Q 005136 306 QMTRYSFKPNT--SCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCG----ETKDGRLVFDSIVE 379 (712)
Q Consensus 306 ~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~ 379 (712)
+..+ ..|+. ..+.-+...+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+..+
T Consensus 332 ~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 332 ESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 6554 33333 223345556666777777777777766653 224455555555565554 45666666666666
Q ss_pred CCCCceeeHHHHHHHHhccCCh------hhHHHHhhcCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCC
Q 005136 380 KDVAHVVSWNSMIGGYGLNGQM------EEAKELFDNMP-KRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLS---GEIP 449 (712)
Q Consensus 380 ~~~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---g~~p 449 (712)
..+.+..+|-.+...+....-+ ..|..++.... ...+...|.+...+...|++..|...|...... -..+
T Consensus 409 ~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 409 QTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred cccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 6666666776666666554433 23333332222 245566777777777777777777777776544 1122
Q ss_pred CH------HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchH
Q 005136 450 NK------STFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISW 520 (712)
Q Consensus 450 ~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 520 (712)
+. .+--.+.......++.+.|.+.+..+.+.. +.-+..|-.+..+....+...+|...++... ..++..|
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ar 567 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNAR 567 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHH
Confidence 22 122233444555667777777777777642 2223334444433334466777777777665 3456667
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcc------------cCcHHHHHHHHHhcchhcCCCC-
Q 005136 521 TVMVRGLAESGYAKESINLFEEMEKTS-ITPNELTILSVLFACSH------------SGLVDKGLKYFNSMEPIYNIKP- 586 (712)
Q Consensus 521 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~p- 586 (712)
+.+...+.....+..|.+-|....+.- ..+|..+...|...|.. .+..++|+++|.++. ...|
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL---~~dpk 644 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL---RNDPK 644 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH---hcCcc
Confidence 766667777777777777665554432 12455555555554431 244667777777776 3355
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC--CCCCchHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSMP--FEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLA--EEHPAGYVLLSN 662 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~ 662 (712)
|...-+-++-+++..|++.+|..+|.+.. ......+|.++..+|..+|++-.|+++|+.+++.. .+++.++..|+.
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 67777777777788888888888887763 12345677777788888888888888888877653 345777788888
Q ss_pred HHHhcCCchhHHHHHHHHHhCCC
Q 005136 663 IYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 663 ~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
++.+.|++.+|.+.+.......+
T Consensus 725 a~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 725 AWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCC
Confidence 88888888888887776665443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-20 Score=186.58 Aligned_cols=552 Identities=12% Similarity=0.101 Sum_probs=337.1
Q ss_pred hhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhc--CCCC--cchHHHHHHHHHhcCChHHHHHHHhh
Q 005136 37 VIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDL--NGFD--LVVHNCMINANIQWGNLEEAQRLFDG 112 (712)
Q Consensus 37 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 112 (712)
++.|.+.|...++..+. +...+-.-+......|++..|..+|... ..|. +...-.+..++.+.|+.+.|+..|.+
T Consensus 146 ~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 45566666555555432 3333322333334556666666666663 1121 11222333455566666666666666
Q ss_pred CCCCChhHHHHHHHHH---H---ccCChHHHHHHhhh---CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--
Q 005136 113 MPERNEVSWTALISGF---M---KHGRVEESMWYFER---NPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVK-- 181 (712)
Q Consensus 113 ~~~~~~~~~~~l~~~~---~---~~g~~~~a~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-- 181 (712)
..+-|+...++++... . ....+..+..++.+ ....|+.+.+.|..-|.-.|++..+..+..-+......
T Consensus 225 alqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~ 304 (1018)
T KOG2002|consen 225 ALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS 304 (1018)
T ss_pred HHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH
Confidence 6654443322222211 1 12234444555443 22356667777777777777777777777777654311
Q ss_pred CCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCC--C-CcchHHHHHH
Q 005136 182 PNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEK--R-DVVSWTVILD 258 (712)
Q Consensus 182 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll~ 258 (712)
.-...|..+.+++...|+++.|...|.+.++.........+-.+...+.+.|+.+.+...|+.+.+ | +..+...|..
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 123457777788888888888888887776655333344555667777788888888888887765 2 3345555555
Q ss_pred HHHhcC----CHHHHHHHHhhCCCC---CceeHHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCCHHHHHHHHHHHh
Q 005136 259 VFIEMG----DLGEARRIFDEMPER---NEVSWSVMIARYNQSGYPEEAFRLFRQM----TRYSFKPNTSCFSIVLSALA 327 (712)
Q Consensus 259 ~~~~~~----~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~p~~~~~~~ll~~~~ 327 (712)
.|+..+ ..+.|..++.+..++ |..+|-.+...+... ++..++..|... ...+-.+.+...|.+.....
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 665554 456666666666553 444565555555443 344446665543 34455567777888888888
Q ss_pred ccCChhhHHHHHHHHHHc---CCCCc------HHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhcc
Q 005136 328 SLKALRSGMHVHAHVLKI---GIEKD------VFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLN 398 (712)
Q Consensus 328 ~~~~~~~a~~~~~~~~~~---~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 398 (712)
..|++..|...+...... ...++ ..+-..+..+.-..++++.|.+.|..+....|.-+..|-.++......
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDK 543 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhc
Confidence 888888888888877654 11222 223344566666777888888999888888866666666665444445
Q ss_pred CChhhHHHHhhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCchHHHHHHH
Q 005136 399 GQMEEAKELFDNMPK---RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSG-EIPNKSTFSSVLCASASVASLEKGKDLH 474 (712)
Q Consensus 399 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 474 (712)
+...+|..++..... .++..+..+...|.+...+..|..-|....+.- ..+|..+...|...|.
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~------------ 611 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI------------ 611 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH------------
Confidence 677778777777653 466677777778888888877777666655432 2244444443333221
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 005136 475 GKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN 551 (712)
Q Consensus 475 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 551 (712)
+.+....-.| -...+..+.|.++|.++.+ .|...-|.+.-.++..|++.+|..+|.+.++.. ...
T Consensus 612 ~~l~~~~rn~-----------ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~ 679 (1018)
T KOG2002|consen 612 QALHNPSRNP-----------EKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDF 679 (1018)
T ss_pred HHhcccccCh-----------HHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhC
Confidence 1111100000 1223456677777776653 344555667777788888888888888887763 234
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 552 ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 552 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
..+|..+..+|...|++..|+++|+....++.-+.+..+...|++++.+.|++.+|.+.+...
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 456777788888888888888888887766665557778888888888888888888777665
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-21 Score=184.97 Aligned_cols=422 Identities=12% Similarity=0.150 Sum_probs=347.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCce---eHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 005136 253 WTVILDVFIEMGDLGEARRIFDEMPERNEV---SWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASL 329 (712)
Q Consensus 253 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 329 (712)
...|..-..+.|++++|++.-..+-..|+. ..-.+-..+.+..+.++....-....+ ..+.-..+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r-~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR-KNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhh-ccchHHHHHHHHHHHHHHh
Confidence 344556667799999999988777653322 222223445555666665544333333 2344567999999999999
Q ss_pred CChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhh
Q 005136 330 KALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFD 409 (712)
Q Consensus 330 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 409 (712)
|+++.|+..++.+++.. +.....|..+..++...|+.+.|...|.+..+.+|...-+.+.+...+...|+.++|...+.
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 99999999999999864 22567888999999999999999999999999887544455555566667899999988887
Q ss_pred cCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc
Q 005136 410 NMPK--R-NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPN-KSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYD 485 (712)
Q Consensus 410 ~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 485 (712)
+..+ | -...|+.|...+...|+...|+..|++.... .|+ ...|..+-..|...+.+++|...+.+..... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 7764 3 3568999999999999999999999999874 455 3577888888888999999998888877643 445
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHhccCCC--CC-cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 005136 486 VFLGTALTDTYAKSGDIESSRRVFDRMPD--KN-EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE-LTILSVLFA 561 (712)
Q Consensus 486 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~ 561 (712)
...+..+...|..+|.++-|+..+++... |+ +..|+.|..++-..|++.+|...+.+... +.|+. ...+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence 67778888889999999999999999874 43 45799999999999999999999999998 67764 678999999
Q ss_pred hcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHH
Q 005136 562 CSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 638 (712)
+...|.++.|..+|.... .+.| -....+.|+..|-+.|++++|+..+++. +++|. ...+..+...|-..|+...
T Consensus 364 ~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 999999999999999987 5577 4668899999999999999999999987 78888 7788999999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 639 AERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 639 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
|.+.+.+++..+|...+++..|+.+|...|+..+|++-++..++-.
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999988754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-19 Score=193.40 Aligned_cols=413 Identities=11% Similarity=0.036 Sum_probs=268.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--CCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChh
Q 005136 257 LDVFIEMGDLGEARRIFDEMPE--RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKP-NTSCFSIVLSALASLKALR 333 (712)
Q Consensus 257 l~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~ 333 (712)
...+.+.|++++|+..|++... |+...|..+..+|.+.|++++|++.++..++. .| +...+..+..++...|+++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHH
Confidence 3344444444444444444432 44445556666666666666666666666552 33 3445555666666666666
Q ss_pred hHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC
Q 005136 334 SGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK 413 (712)
Q Consensus 334 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 413 (712)
+|...+..+.......+.. ...++..+.. ..+........+..+++...+..+...+ ..........-+....+
T Consensus 212 eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYL-QSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHH-HHccCCcchhhhhcccc
Confidence 6666555443332111111 1111111111 1222222233333333333333332222 11111111111111111
Q ss_pred CC---cccHHHHHHHH---HhcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc
Q 005136 414 RN---DVSWSAIISGY---LEHKQFDLVFAVFNEMLLSG-EIP-NKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYD 485 (712)
Q Consensus 414 ~~---~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~g-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 485 (712)
-+ ...+..+...+ ...+++++|...|++....+ ..| ....+..+...+...|++++|...+++..+.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 11 11222222111 23467889999999998765 234 34556677777888999999999999988763 334
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 005136 486 VFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFA 561 (712)
Q Consensus 486 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 561 (712)
...+..+..++...|++++|...|+.+.+ .+...|..+...+...|++++|+..|++.++ +.|+ ...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHH
Confidence 56777888889999999999999987753 3567888899999999999999999999998 4564 4667778888
Q ss_pred hcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH-H------H-HHHHHHHHh
Q 005136 562 CSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDS-N------A-WASLLSGCK 631 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~------~-~~~l~~~~~ 631 (712)
+.+.|++++|+..|++... ..| +...+..++.++...|++++|++.|++. ...|+. . . +......+.
T Consensus 443 ~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 9999999999999999873 356 6788999999999999999999999986 444431 1 1 111222244
Q ss_pred hcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 632 TYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 632 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
..|++++|...++++++++|++..++..++.++.+.|++++|++++++..+.
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999998764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-19 Score=182.62 Aligned_cols=301 Identities=12% Similarity=0.101 Sum_probs=208.8
Q ss_pred HHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCC-------cccHHHHHHHHHhcCC
Q 005136 359 DLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRN-------DVSWSAIISGYLEHKQ 431 (712)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~ 431 (712)
..+...|++++|...|.++.+.++.+..++..+...+...|++++|..+++.+.... ...+..++..|...|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 345566777777777777777666556666666666777777777755555544311 1235556666666666
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhcc
Q 005136 432 FDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDR 511 (712)
Q Consensus 432 ~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 511 (712)
+++|..+|+++.+.. +++..++..++..+...|++++|.+.+..+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 666677777766542 33455566666666666666666666666554321111000
Q ss_pred CCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc--h
Q 005136 512 MPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN--G 588 (712)
Q Consensus 512 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~ 588 (712)
....+..+...+...|++++|...++++.+. .|+ ...+..+...+.+.|++++|.++|+++... .|+ .
T Consensus 179 ----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~ 249 (389)
T PRK11788 179 ----IAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLS 249 (389)
T ss_pred ----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHH
Confidence 0012345666777888888888888888874 344 456777788888999999999999988733 443 4
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh-
Q 005136 589 RHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYAS- 666 (712)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~- 666 (712)
.++..++.+|...|++++|...++++ ...|+...+..+...+...|++++|..+++++++..|+++.....+...+..
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhcc
Confidence 56788899999999999999999987 4567777777788889999999999999999999999976444334333322
Q ss_pred -cCCchhHHHHHHHHHhCCCccCCccc
Q 005136 667 -AGRWIDAMNVRKLMTEKGLRKSGGCS 692 (712)
Q Consensus 667 -~g~~~eA~~~~~~~~~~~~~~~~~~~ 692 (712)
.|+..+|+.++++|++++++++|.+.
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 56999999999999999998888744
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-17 Score=181.39 Aligned_cols=364 Identities=10% Similarity=0.058 Sum_probs=182.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 005136 284 WSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSK 363 (712)
Q Consensus 284 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 363 (712)
+..+...+...|++++|..+|++..+.. +.+......+...+...|++++|...++.+.+.. +.+.. +..+..++..
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~ 128 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHH
Confidence 4555555555555555555555555421 2233344445555555566666666666555542 22333 5555666666
Q ss_pred cCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcc--------cHHHHHHHHH-----hcC
Q 005136 364 CGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDV--------SWSAIISGYL-----EHK 430 (712)
Q Consensus 364 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~-----~~~ 430 (712)
.|+.++|...++++.+..|.+...+..+...+...+..++|++.++.... ++. ....++.... ..+
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~ 207 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKE 207 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence 66666666666666666655555555556666666666666555555443 111 0011111111 111
Q ss_pred Ch---hHHHHHHHHHHHC-CCCCCHH-HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHH
Q 005136 431 QF---DLVFAVFNEMLLS-GEIPNKS-TFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESS 505 (712)
Q Consensus 431 ~~---~~a~~~~~~~~~~-g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 505 (712)
++ ++|+..++.+.+. ...|+.. .+... ....+..+...|++++|
T Consensus 208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a-------------------------------~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 208 RYAIADRALAQYDALEALWHDNPDATADYQRA-------------------------------RIDRLGALLARDRYKDV 256 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCccchHHHHH-------------------------------HHHHHHHHHHhhhHHHH
Confidence 22 3445555555432 1111110 10000 00001122233445555
Q ss_pred HHHhccCCCCC---cc-hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhcccCcHHHHHHHHH
Q 005136 506 RRVFDRMPDKN---EI-SWTVMVRGLAESGYAKESINLFEEMEKTSITPN-----ELTILSVLFACSHSGLVDKGLKYFN 576 (712)
Q Consensus 506 ~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~ 576 (712)
+..|+.+.+.+ +. ....+..+|...|++++|+.+|+++.+. .|. ......+..++...|++++|.+.++
T Consensus 257 ~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 257 ISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55554444221 10 1111234455555555555555554432 121 1223333444455555555555555
Q ss_pred hcchhc----------CCCCc---hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHH
Q 005136 577 SMEPIY----------NIKPN---GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAER 641 (712)
Q Consensus 577 ~~~~~~----------~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 641 (712)
.+.... .-.|+ ...+..++..+...|++++|+++++++ ...|+ ...+..+...+...|+.++|++
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 544210 01222 123445666667777777777777765 33333 4555666666677777777777
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 642 AVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 642 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
.++++++.+|+++.++..++..+...|++++|...++++++..
T Consensus 415 ~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 415 ELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 7777777777777777777777777777777777777776643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-17 Score=176.84 Aligned_cols=417 Identities=15% Similarity=0.070 Sum_probs=195.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcc
Q 005136 153 TAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKM 232 (712)
Q Consensus 153 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 232 (712)
......+.+.|++++|+..|++.++ ..|+...|..+..++...|+++.|...++..++.. +.+...+..+..++...
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 3445555666666666666666554 34555556666666666666666666666665543 33344555566666666
Q ss_pred CChHHHHHHHhhcCCCC---cchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005136 233 GEVDLARSVFDRMEKRD---VVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTR 309 (712)
Q Consensus 233 ~~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 309 (712)
|++++|...|..+...+ ......++..+........+...++.-. .+...+..+.. +...........-+....+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence 66666665554332211 1111111111111111122222222211 12222222222 2111111111111111111
Q ss_pred CCCCCCH-HHHHHHHH---HHhccCChhhHHHHHHHHHHcC-CCC-cHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCC
Q 005136 310 YSFKPNT-SCFSIVLS---ALASLKALRSGMHVHAHVLKIG-IEK-DVFISNALIDLYSKCGETKDGRLVFDSIVEKDVA 383 (712)
Q Consensus 310 ~~~~p~~-~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 383 (712)
..|.. ..+..+.. -....+++++|.+.++...+.+ ..| ....+..+..++...|++++|...|++..+.++.
T Consensus 286 --~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 363 (615)
T TIGR00990 286 --LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR 363 (615)
T ss_pred --cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 11110 00000000 0122345666666666666543 112 3345555666666667777777776666666554
Q ss_pred ceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005136 384 HVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASAS 463 (712)
Q Consensus 384 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 463 (712)
....|..+...+...|++++| ...|++.++.. +.+...+..+...+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA-------------------------------~~~~~~al~~~-p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKA-------------------------------EEDFDKALKLN-SEDPDIYYHRAQLHFI 411 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHH-------------------------------HHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 455555555555555555555 55554444431 2223444444444444
Q ss_pred cCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHH
Q 005136 464 VASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLF 540 (712)
Q Consensus 464 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~ 540 (712)
.|++++|...+++..+.. +.+...+..+..++.+.|++++|...|+...+ .+...++.+...+...|++++|++.|
T Consensus 412 ~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred cCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 555555555554444432 22333344445555555555555555555432 23445555666666666666666666
Q ss_pred HHHHHcCCCCCH-HH-------HHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHH
Q 005136 541 EEMEKTSITPNE-LT-------ILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFI 611 (712)
Q Consensus 541 ~~~~~~~~~p~~-~~-------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 611 (712)
++.... .|+. .. ++.....+...|++++|.+++++.. .+.| +...+..++.++.+.|++++|+..|
T Consensus 491 ~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl---~l~p~~~~a~~~la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 491 DTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL---IIDPECDIAVATMAQLLLQQGDVDEALKLF 565 (615)
T ss_pred HHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 666652 2221 00 1111112223466666666666654 2244 3344556666666666666666666
Q ss_pred HhC
Q 005136 612 NSM 614 (712)
Q Consensus 612 ~~~ 614 (712)
++.
T Consensus 566 e~A 568 (615)
T TIGR00990 566 ERA 568 (615)
T ss_pred HHH
Confidence 654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-18 Score=180.53 Aligned_cols=332 Identities=8% Similarity=-0.007 Sum_probs=200.7
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 005136 283 SWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYS 362 (712)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 362 (712)
-...++..+.+.|++++|..+++......-. +...+..++.+....|+++.|...++.+.... +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3445566666777777777777776653222 22233333344445666666666666666543 223455556666666
Q ss_pred hcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 005136 363 KCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEM 442 (712)
Q Consensus 363 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 442 (712)
..|++++|...+++.....+.+...+..+...+...|+.++| ...++.+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA-------------------------------~~~~~~~ 170 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQA-------------------------------ISLARTQ 170 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHH-------------------------------HHHHHHH
Confidence 666666666666666666555555566666666666666666 5555544
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcch
Q 005136 443 LLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEIS 519 (712)
Q Consensus 443 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 519 (712)
...... +...+..+ ..+...|++++|...++.+.+....++......+...+...|++++|...++.... .+...
T Consensus 171 ~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~ 248 (656)
T PRK15174 171 AQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAAL 248 (656)
T ss_pred HHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Confidence 433211 11111111 22445555555555555554432222222333344555666666666666665542 23445
Q ss_pred HHHHHHHHHHcCChHH----HHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHH
Q 005136 520 WTVMVRGLAESGYAKE----SINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTC 593 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 593 (712)
+..+...+...|++++ |+..++++.+ ..|+ ...+..+...+...|++++|+..++++.. ..| +...+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~ 323 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAM 323 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 6666677777777764 6777887777 4554 45677777778888888888888887773 356 4566777
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 594 VVDMLSRSGRLSEAEDFINSM-PFEPDSNAW-ASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
++.+|.+.|++++|...++++ ...|+...+ ..+..++...|+.++|...++++++..|++.
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 788888888888888888776 345554333 3344557788888888888888888888754
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-16 Score=169.92 Aligned_cols=421 Identities=11% Similarity=0.058 Sum_probs=258.4
Q ss_pred ccCChHHHHHHHhhcCCCCcc---hHHHHHHHHHhcCCHHHHHHHHhhCCCCCcee-HHHH--HHHHHhcCChhHHHHHH
Q 005136 231 KMGEVDLARSVFDRMEKRDVV---SWTVILDVFIEMGDLGEARRIFDEMPERNEVS-WSVM--IARYNQSGYPEEAFRLF 304 (712)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~l--~~~~~~~~~~~~a~~~~ 304 (712)
+.|+++.|...|++..+.++. ....++..+...|+.++|+..+++...|+... +..+ ...+...|++++|+++|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444444444444444431111 11134444444444444444444544432222 2222 23445556666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCc
Q 005136 305 RQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAH 384 (712)
Q Consensus 305 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 384 (712)
+++.+.. +-+...+..++..+...++.++|++.+..+.... |+...+..++..+...++..+|+..++++.+.+|.+
T Consensus 126 ~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 126 QSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 6665522 1123344444555555566666666655555442 333333333333333444444666666666666555
Q ss_pred eeeHHHHHHHHhccCChhhHHHHhhcCCCC---Ccc------cHHHHHHHH-----HhcCCh---hHHHHHHHHHHHC-C
Q 005136 385 VVSWNSMIGGYGLNGQMEEAKELFDNMPKR---NDV------SWSAIISGY-----LEHKQF---DLVFAVFNEMLLS-G 446 (712)
Q Consensus 385 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~------~~~~l~~~~-----~~~~~~---~~a~~~~~~~~~~-g 446 (712)
...+..+..++.+.|-...|.++...-+.- ... .....++.- ....++ +.|+.-++.+... +
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 666666666666666666666666554421 000 000011000 011222 3445555555542 2
Q ss_pred CCCC-HHHH----HHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCC-----
Q 005136 447 EIPN-KSTF----SSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKN----- 516 (712)
Q Consensus 447 ~~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 516 (712)
..|. ...| .=.+.++...+++.+++..++.+...+.+.+..+...+.++|...+++++|..+++.+...+
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~ 362 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFR 362 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccC
Confidence 2232 2222 12244677888999999999999988887777888899999999999999999999875321
Q ss_pred ----cchHHHHHHHHHHcCChHHHHHHHHHHHHcCC-----------CCC--HH-HHHHHHHHhcccCcHHHHHHHHHhc
Q 005136 517 ----EISWTVMVRGLAESGYAKESINLFEEMEKTSI-----------TPN--EL-TILSVLFACSHSGLVDKGLKYFNSM 578 (712)
Q Consensus 517 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~p~--~~-~~~~l~~~~~~~g~~~~a~~~~~~~ 578 (712)
......|.-++...+++++|..+++++.+... .|| -. .+..++..+...|++.+|++.++++
T Consensus 363 ~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l 442 (822)
T PRK14574 363 NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDL 442 (822)
T ss_pred CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22246788899999999999999999987311 122 22 2445567788899999999999999
Q ss_pred chhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 579 EPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 579 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
. ...| |......++.++...|++.+|+..++.. ...|+ ..+....+.++...|++.+|+.+.+.+.+..|+++.
T Consensus 443 ~---~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 443 S---STAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred H---HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 7 3477 8999999999999999999999999876 45665 455566777788999999999999999999999885
Q ss_pred hH
Q 005136 656 GY 657 (712)
Q Consensus 656 ~~ 657 (712)
+-
T Consensus 520 ~~ 521 (822)
T PRK14574 520 SQ 521 (822)
T ss_pred HH
Confidence 44
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-15 Score=153.16 Aligned_cols=586 Identities=10% Similarity=0.047 Sum_probs=369.9
Q ss_pred HhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHccCChHHHHHHhh---hCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 005136 98 IQWGNLEEAQRLFDGMPE---RNEVSWTALISGFMKHGRVEESMWYFE---RNPFQNVISWTAAICGFVQNGFSFEALKL 171 (712)
Q Consensus 98 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 171 (712)
.-+|++++|..++.++.. .+...|.+|...|-..|+.+++...+- .+.+.|...|-.+.....+.|++++|.-.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 334777777777766654 245567777777777777777766542 34445556677777777777777777777
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHH----HHHHHccCChHHHHHHHhhcCC
Q 005136 172 FLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSL----ITLSLKMGEVDLARSVFDRMEK 247 (712)
Q Consensus 172 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~~~~~~a~~~~~~~~~ 247 (712)
|.+.++.. +++-..+.--+..|-+.|+...|...+.++....++.+..-+..+ +..+...++.+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77776653 223334444455666677777777777777666543343333333 3344455555666666665543
Q ss_pred -----CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC--------------------------CCceeHH----HHHHHHH
Q 005136 248 -----RDVVSWTVILDVFIEMGDLGEARRIFDEMPE--------------------------RNEVSWS----VMIARYN 292 (712)
Q Consensus 248 -----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~----~l~~~~~ 292 (712)
-+...++.++..+.+...++.|......... ++..+|. -++-++.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 2334566666667766666666665544322 1111111 2223334
Q ss_pred hcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHH
Q 005136 293 QSGYPEEAFRLFRQMTRYSFKP--NTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDG 370 (712)
Q Consensus 293 ~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 370 (712)
+.+..+....+........+.| +...|.-+..++...|++..|+.++..+.......+..+|-.+..+|...|..+.|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 4444444555555555655444 55689999999999999999999999999886666788999999999999999999
Q ss_pred HHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcc------------cHHHHHHHHHhcCChhHHHHH
Q 005136 371 RLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDV------------SWSAIISGYLEHKQFDLVFAV 438 (712)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~l~~~~~~~~~~~~a~~~ 438 (712)
...|+.+....|.+..+-..|...+-+.|+.++|.+.++.+..||.. ........+.+.|+.++-+.+
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999888889999999999999999999999998866522 233344556777777665555
Q ss_pred HHHHHHCC-----C-----------------CCCHHHHHHHHHHHhccCchHHHHHHHHH------HHHcCCCCch--hh
Q 005136 439 FNEMLLSG-----E-----------------IPNKSTFSSVLCASASVASLEKGKDLHGK------IIKLGFPYDV--FL 488 (712)
Q Consensus 439 ~~~~~~~g-----~-----------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~------~~~~~~~~~~--~~ 488 (712)
-..|+... + +-...+...++.+-.+.++.....+-... ....++..+. ..
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 44444321 1 11122222333333333332222111111 1112222221 35
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCC-----Ccc----hHHHHHHHHHHcCChHHHHHHHHHHHHc-C--CCCCH-HHH
Q 005136 489 GTALTDTYAKSGDIESSRRVFDRMPDK-----NEI----SWTVMVRGLAESGYAKESINLFEEMEKT-S--ITPNE-LTI 555 (712)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~--~~p~~-~~~ 555 (712)
+..++..+.+.+++++|..+...+... +.. .-...+.+.+..+++..|...++.|+.. + ..|.. ..|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 566777888999999999998877632 111 2344566778899999999999998874 1 12322 234
Q ss_pred HHHHHHhcccCcHHHHHHHHHhcchhcCCCC-c-hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH-Hh
Q 005136 556 LSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-N-GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLLSG-CK 631 (712)
Q Consensus 556 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~ 631 (712)
+...+...+.++-.--.+++..+.. .+| + +......+..+..++.+.-|+..+-+. ...|+....+.+++. +.
T Consensus 709 n~~~s~~~~~~q~v~~~R~~~~~~~---~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafi 785 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLIMRLLV---KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFI 785 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---cCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 4455555555554444455544431 233 2 333334455567889999998877665 445653333333222 21
Q ss_pred ----------hcCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCcc
Q 005136 632 ----------TYKNEQIAERAVKNLWKLAEE--HPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRK 687 (712)
Q Consensus 632 ----------~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 687 (712)
++-..-++..++++..++.-. ..++.+.+|++|...|-..=|..+++++++-.+.+
T Consensus 786 h~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~ 853 (895)
T KOG2076|consen 786 HLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKD 853 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccc
Confidence 233455677788877776544 67899999999999999999999999999865433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-17 Score=176.41 Aligned_cols=326 Identities=13% Similarity=0.030 Sum_probs=238.4
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCC
Q 005136 321 IVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQ 400 (712)
Q Consensus 321 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (712)
.++..+.+.|+++.|..++...+..... +......++.+....|++++|...|+++...+|.+..++..
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~---------- 115 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLL---------- 115 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHH----------
Confidence 3344444555555555555555544322 22233333344444555555555555555555444444444
Q ss_pred hhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc
Q 005136 401 MEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKL 480 (712)
Q Consensus 401 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 480 (712)
+...+...|++++|...++++.... +.+...+..+...+...|++++|...+..+...
T Consensus 116 ---------------------la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 116 ---------------------VASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred ---------------------HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 4445555555555599999888752 345667788888999999999999999988765
Q ss_pred CCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCC----cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHH
Q 005136 481 GFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKN----EISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTI 555 (712)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~ 555 (712)
... +...+..+ ..+...|++++|...++.+.+.+ ...+..+...+...|++++|+..++++.+. .|+ ...+
T Consensus 174 ~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~ 249 (656)
T PRK15174 174 VPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALR 249 (656)
T ss_pred CCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHH
Confidence 432 33333333 34788999999999999876432 233445567888999999999999999984 454 5667
Q ss_pred HHHHHHhcccCcHHH----HHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 005136 556 LSVLFACSHSGLVDK----GLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLS 628 (712)
Q Consensus 556 ~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~ 628 (712)
..+..++...|++++ |...|+++. ...| +...+..++..+.+.|++++|...+++. ...|+ ...+..+..
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al---~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHAL---QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 788889999999985 899999988 3467 6788999999999999999999999987 44565 556667777
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 629 GCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 629 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
.+...|++++|...++++.+..|+++..+..++.++...|++++|+..+++.++..+.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 7999999999999999999999998887888899999999999999999999887544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-18 Score=174.14 Aligned_cols=287 Identities=12% Similarity=0.092 Sum_probs=146.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcC
Q 005136 289 ARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKD---VFISNALIDLYSKCG 365 (712)
Q Consensus 289 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 365 (712)
..+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+...+..++ ...+..++..|...|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34455667777777777776632 22344566666666667777777777766665432111 234566667777777
Q ss_pred ChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCc--------ccHHHHHHHHHhcCChhHHHH
Q 005136 366 ETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRND--------VSWSAIISGYLEHKQFDLVFA 437 (712)
Q Consensus 366 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~ 437 (712)
++++|..+|+++.+..+.+..++..++..+.+.|++++|++.++.+.+.++ ..+..++..+.+.|++++|..
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777777665555555666666666666666666555554432110 123334444555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC--CC
Q 005136 438 VFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP--DK 515 (712)
Q Consensus 438 ~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 515 (712)
.|+++.+.. +.+...+..+...+.+.|++++|.+++.++.+.+.......+..++.+|...|++++|...++++. .|
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 555555432 222334444444555555555555555555443211122333444444444444444444444433 23
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc---cCcHHHHHHHHHhcc
Q 005136 516 NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSH---SGLVDKGLKYFNSME 579 (712)
Q Consensus 516 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~ 579 (712)
+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+.++++..++++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 333334444444444555555555544444 23444444444433332 234444444444444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.8e-15 Score=147.97 Aligned_cols=646 Identities=12% Similarity=0.081 Sum_probs=336.6
Q ss_pred CCCchhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhc---CCCCcchHHHH
Q 005136 17 FNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDL---NGFDLVVHNCM 93 (712)
Q Consensus 17 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l 93 (712)
++|...........+...|++++|..++.+.++..+- ....|.+|...|-..|+.+++...+--. .+.|..-|..+
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 4455666666666677778888888888888877744 6666777888888888888887666544 44556777777
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChh---HHHHHHHHHHccCChHHHHHHhhhCCCC----Cc----ccHHHHHHHHHhc
Q 005136 94 INANIQWGNLEEAQRLFDGMPERNEV---SWTALISGFMKHGRVEESMWYFERNPFQ----NV----ISWTAAICGFVQN 162 (712)
Q Consensus 94 ~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~----~~~~~li~~~~~~ 162 (712)
..-..+.|++..|.-+|.+..+.++. ..-.-...|-+.|+...|...|.++.+. |. ..--.+++.+...
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 77777888888888888777653332 2233445667777777777666554321 11 1223344556666
Q ss_pred CChhHHHHHHHHHHHcC-CCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhC---------------------------
Q 005136 163 GFSFEALKLFLKLLESG-VKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAG--------------------------- 214 (712)
Q Consensus 163 g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------------- 214 (712)
++-+.|.+.++.....+ -.-+...++.++..+.....++.+...........
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 66677777776666522 12233455666666666666666666665554411
Q ss_pred CCCCccHHHHHHHHHHcc--CChHHHHHHHhhcCC----CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC----CCceeH
Q 005136 215 FEKHVSVCNSLITLSLKM--GEVDLARSVFDRMEK----RDVVSWTVILDVFIEMGDLGEARRIFDEMPE----RNEVSW 284 (712)
Q Consensus 215 ~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~ 284 (712)
..++..++ .++-++.+. +...++...|..... .++..|..+..++...|++++|..+|..+.. .+...|
T Consensus 374 ~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 11112220 111122222 222222222211111 1333455555666666666666666655543 234455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChhhHHHHHHHHH--------HcCCCCcHHHHH
Q 005136 285 SVMIARYNQSGYPEEAFRLFRQMTRYSFKPNT-SCFSIVLSALASLKALRSGMHVHAHVL--------KIGIEKDVFISN 355 (712)
Q Consensus 285 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~ 355 (712)
-.+...|...|.++.|...|+..+. ..|+. ..-..|-..+.+.|+.++|.+++..+. ..+..|+..+..
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 5566666666666666666666554 33322 233334444445566666666555532 112333344444
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHH
Q 005136 356 ALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLV 435 (712)
Q Consensus 356 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 435 (712)
.....+...|+.++=..+-..|..... ...++ .....-.+.......-...........+.+-.+.++....
T Consensus 531 ~r~d~l~~~gk~E~fi~t~~~Lv~~~~-----~~~~~---f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 602 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFINTASTLVDDFL-----KKRYI---FPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVM 602 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH-----HHHHh---cchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHh
Confidence 444455555555543333222221110 00000 0000000000000000001111222222222222221111
Q ss_pred HH------HHHHHHHCCCCCCH--HHHHHHHHHHhccCchHHHHHHHHHHHHcCC--CCch---hhHHHHHHHHHhcCCh
Q 005136 436 FA------VFNEMLLSGEIPNK--STFSSVLCASASVASLEKGKDLHGKIIKLGF--PYDV---FLGTALTDTYAKSGDI 502 (712)
Q Consensus 436 ~~------~~~~~~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~ 502 (712)
.+ .+.--...|+..+. ..+.-++.++++.+.+++|..+...+..... .++. ..-...+.+....+++
T Consensus 603 ~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~ 682 (895)
T KOG2076|consen 603 EKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDP 682 (895)
T ss_pred hhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCH
Confidence 11 11111122332222 2344555666677777777777666655321 1111 1222334455566777
Q ss_pred HHHHHHhccCCCC-----C---cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcccCcHHHHH
Q 005136 503 ESSRRVFDRMPDK-----N---EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE--LTILSVLFACSHSGLVDKGL 572 (712)
Q Consensus 503 ~~A~~~~~~~~~~-----~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~ 572 (712)
..|...++.+... + ...|+...+.+.+.++-.--.+.+..+.. ..|+. ..+.....-....+.+..|+
T Consensus 683 ~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al 760 (895)
T KOG2076|consen 683 GDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHAL 760 (895)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHH
Confidence 7777777766532 2 23466555555555544433444433333 22322 11222222334566777787
Q ss_pred HHHHhcchhcCCCCchHHHH-HHHHHhhh----------cCChHHHHHHHHhC-CC-CC--CHHHHHHHHHHHhhcCCHH
Q 005136 573 KYFNSMEPIYNIKPNGRHYT-CVVDMLSR----------SGRLSEAEDFINSM-PF-EP--DSNAWASLLSGCKTYKNEQ 637 (712)
Q Consensus 573 ~~~~~~~~~~~~~p~~~~~~-~l~~~~~~----------~g~~~~A~~~~~~~-~~-~p--~~~~~~~l~~~~~~~g~~~ 637 (712)
..+-++. ...|+.+..+ +++-++.. .-..-++..++++. .. .+ ....+-++..+|...|=..
T Consensus 761 ~~y~ra~---~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~ 837 (895)
T KOG2076|consen 761 QEYMRAF---RQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVH 837 (895)
T ss_pred HHHHHHH---HhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHH
Confidence 7776665 3366533333 33333321 11234556666555 11 23 4677788999999999999
Q ss_pred HHHHHHHHHhccCCCC------------CchHHHHHHHHHhcCCchhHHHHHHH
Q 005136 638 IAERAVKNLWKLAEEH------------PAGYVLLSNIYASAGRWIDAMNVRKL 679 (712)
Q Consensus 638 ~a~~~~~~~~~~~p~~------------~~~~~~l~~~~~~~g~~~eA~~~~~~ 679 (712)
.|+.+|+++++..|.+ ..+-+.|..+|...|+..-|.+++++
T Consensus 838 LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 838 LAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 9999999999987652 24777889999999999999999875
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-16 Score=159.89 Aligned_cols=643 Identities=11% Similarity=0.018 Sum_probs=362.2
Q ss_pred HHhhcCcCCCCCCchhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcCCCC
Q 005136 7 SLFSINPETSFNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNGFD 86 (712)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 86 (712)
++-.+ ...|+.|+..||.+||..||+.|+.+.|. ++..|.-...+.....++.++.+..+.++.+.+. .|.
T Consensus 12 fla~~-e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 12 FLALH-EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred HHHHH-HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 44556 67899999999999999999999999999 9999988888888889999999999999887776 788
Q ss_pred cchHHHHHHHHHhcCChHH---HHHHHhhCCC-------------------------CChhHHHHHHHHHHccCChHHHH
Q 005136 87 LVVHNCMINANIQWGNLEE---AQRLFDGMPE-------------------------RNEVSWTALISGFMKHGRVEESM 138 (712)
Q Consensus 87 ~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~a~ 138 (712)
..+|..|..+|.+.||+.. ..+.+..+.. ||.. ..+....-.|-++.+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLL 159 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHH
Confidence 8999999999999998754 2221222111 1111 1111111122222222
Q ss_pred HHhh---------------------------------hCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 005136 139 WYFE---------------------------------RNP-FQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNE 184 (712)
Q Consensus 139 ~~~~---------------------------------~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 184 (712)
+++. ... .++..+|..++..-..+|+.+.|..++.+|++.|++.+.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 2221 111 367788999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcC
Q 005136 185 VTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMG 264 (712)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~ 264 (712)
..|..|+-+ .++...+..++.-|...|+.|+..|+...+..+...|....+.+..+.-.--....+..+.++.....
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 988888766 77888888999999999999999999888877777555332222211100001111112221111111
Q ss_pred CHHHH--HHHHhhCCC-------CCceeHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCC-CHHHHHHHHHHHhc----
Q 005136 265 DLGEA--RRIFDEMPE-------RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYS--FKP-NTSCFSIVLSALAS---- 328 (712)
Q Consensus 265 ~~~~a--~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p-~~~~~~~ll~~~~~---- 328 (712)
+++.- ..+....++ .....|... .-...+|.-+++.++-..|..-. ..+ ++..|..++..+.+
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~ 395 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIER 395 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHh
Confidence 11100 000000000 011111111 11112333333333333332110 111 11112111111111
Q ss_pred ------------------cCChhhHHHHHHH------------HH----HcCCCC-------cHHHHHHHHHHHHhcCCh
Q 005136 329 ------------------LKALRSGMHVHAH------------VL----KIGIEK-------DVFISNALIDLYSKCGET 367 (712)
Q Consensus 329 ------------------~~~~~~a~~~~~~------------~~----~~~~~~-------~~~~~~~l~~~~~~~g~~ 367 (712)
..+.....+.... +. ...+.+ -..+-+.++..++..-+.
T Consensus 396 ~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~ 475 (1088)
T KOG4318|consen 396 HICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNK 475 (1088)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111 00 001111 112334455555555555
Q ss_pred HHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCc------ccHHHHHHHHHhcCChhHHHHHHHH
Q 005136 368 KDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRND------VSWSAIISGYLEHKQFDLVFAVFNE 441 (712)
Q Consensus 368 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~ 441 (712)
.+++..-+.....-. ...|..|+.-+......+.|..+.+++..++. .-+..+.+...+.+....+..++.+
T Consensus 476 lK~l~~~ekye~~lf--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 476 LKILCDEEKYEDLLF--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHHHHHHh--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 555544444433222 25688899999999999999999998887643 3577888888899999999999988
Q ss_pred HHHCCC-CC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCC
Q 005136 442 MLLSGE-IP-NKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKN 516 (712)
Q Consensus 442 ~~~~g~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~ 516 (712)
+.+.-. .| ...++..++...+..|+.+...++.+-+...|+..+ ..++....+.++...|.+.++... ++.
T Consensus 554 ~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~ 629 (1088)
T KOG4318|consen 554 DKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPY 629 (1088)
T ss_pred hhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCC
Confidence 876421 22 245566777777888888888888888887776553 233344556677777766665443 222
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhc-----------chhcCCC
Q 005136 517 EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSM-----------EPIYNIK 585 (712)
Q Consensus 517 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----------~~~~~~~ 585 (712)
+.....+.+.+. .+..+...++.+- ..=+..|.+.|++..|.++.+.= .+...+.
T Consensus 630 P~~~e~lcrlv~-ke~td~~qk~mDl-------------s~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~ 695 (1088)
T KOG4318|consen 630 PKDLEGLCRLVY-KETTDSPQKTMDL-------------SIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIV 695 (1088)
T ss_pred hHHHHHHHHHHH-hhccccHHHHHhh-------------cchhHHHHhcccccchhhccccCcccccCCCccccccCccc
Confidence 222222222111 1111111110000 00000133333333333332210 0000001
Q ss_pred C---------chHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHHHhccCCC-
Q 005136 586 P---------NGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYK---NEQIAERAVKNLWKLAEE- 652 (712)
Q Consensus 586 p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~- 652 (712)
| +......|...|.+.|+++.|..++.++.+.|.+.+...++..+.+.. +.-++....+++.+..|.
T Consensus 696 ~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f 775 (1088)
T KOG4318|consen 696 PLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLF 775 (1088)
T ss_pred cHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhccccc
Confidence 1 112223366778888888888888888887787777776666655433 444555555555554433
Q ss_pred --CCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 653 --HPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 653 --~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
....+...+...++....+.|.+.+.+..+..+
T Consensus 776 ~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 776 PTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLT 810 (1088)
T ss_pred ccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccC
Confidence 334455555666666666678888888877643
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.9e-14 Score=136.05 Aligned_cols=615 Identities=13% Similarity=0.081 Sum_probs=393.2
Q ss_pred chhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhc---CCCCcchHHHHHHHHHhcCChHHHHHHHh
Q 005136 35 NLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDL---NGFDLVVHNCMINANIQWGNLEEAQRLFD 111 (712)
Q Consensus 35 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 111 (712)
++...|+-++.-..+.++. ++..|-+-.+.--..|++..|+.+..+- .+.+..+|---+ +....+.|..+..
T Consensus 265 ~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHH
Confidence 3455666666666666643 5555655566666666666666665543 223334442222 1123344444444
Q ss_pred hCCCCChhHHHHHHHHHHccCChHHHHHHhhhC---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHH
Q 005136 112 GMPERNEVSWTALISGFMKHGRVEESMWYFERN---PFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFS 188 (712)
Q Consensus 112 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 188 (712)
......+.+-..-+.+---..+...-.+++.+. .+.++..|-. .....+.+.|.-++.+..+. ++.+.
T Consensus 340 ~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKa----AVelE~~~darilL~rAvec-cp~s~---- 410 (913)
T KOG0495|consen 340 NAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKA----AVELEEPEDARILLERAVEC-CPQSM---- 410 (913)
T ss_pred HHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHH----HHhccChHHHHHHHHHHHHh-ccchH----
Confidence 443322222111111111111111112222221 1123333332 23344555566666666653 22122
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHH
Q 005136 189 SICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGE 268 (712)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 268 (712)
-|.-++++...++.|.++++...+. ++.+..+|-.-...--..|+.+...+++++-.. .+...|
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~-----------~L~~ng---- 474 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLS-----------ELQANG---- 474 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------HHhhcc----
Confidence 2333455556666677776666554 455666666655555566666666666553221 000000
Q ss_pred HHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 005136 269 ARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPN--TSCFSIVLSALASLKALRSGMHVHAHVLKIG 346 (712)
Q Consensus 269 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 346 (712)
.+-+...|-.=...+-..|..-.+..+.+..+..|+.-. ..|+..-...|.+.+.++-+..+|...++.
T Consensus 475 --------v~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv- 545 (913)
T KOG0495|consen 475 --------VEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV- 545 (913)
T ss_pred --------eeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-
Confidence 001222333334445555555555666666655554432 346666777777777777777777777764
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCC---CcccHHHHH
Q 005136 347 IEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKR---NDVSWSAII 423 (712)
Q Consensus 347 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~ 423 (712)
.+.+..+|......--..|..+.-..+|++.....+.....|-.....+-..|+...|..++...-+. +...|-..+
T Consensus 546 fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaav 625 (913)
T KOG0495|consen 546 FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAV 625 (913)
T ss_pred ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 23456677777766667788888888888887777666667777777777778888888777776542 445677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChH
Q 005136 424 SGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIE 503 (712)
Q Consensus 424 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 503 (712)
..-....+++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+. ++.-...|..+...+.+.++++
T Consensus 626 Kle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHH
Confidence 7778888888888888887764 466666655555556678888999988887775 3455667888888888999999
Q ss_pred HHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcch
Q 005136 504 SSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEP 580 (712)
Q Consensus 504 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 580 (712)
.|...|..-.+ ..+..|-.|...--+.|..-.|..++++.+-.+ +.+...|...+..-.+.|+.+.|..+..+..+
T Consensus 703 ~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 703 MAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99988887664 245578888888888889999999999888753 33567788888888999999999988888773
Q ss_pred hcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 005136 581 IYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLL 660 (712)
Q Consensus 581 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 660 (712)
.++.+...|..-+...-+.++.....+.+++....| ..+..+...+....+++.|...|.++++.+|++..++..+
T Consensus 782 --ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp--hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 782 --ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP--HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF 857 (913)
T ss_pred --hCCccchhHHHHHHhccCcccchHHHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH
Confidence 455577788888888888888888888888876444 4455566667778899999999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHhCCCccCCcccEEEECC
Q 005136 661 SNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRN 698 (712)
Q Consensus 661 ~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (712)
-..+.+.|.-++-.+++.+.... +|.-|..|+-+..
T Consensus 858 ykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK 893 (913)
T KOG0495|consen 858 YKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhh
Confidence 99999999988888888887664 3555555654433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-16 Score=171.64 Aligned_cols=209 Identities=12% Similarity=0.046 Sum_probs=121.0
Q ss_pred HHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCC---chhhHHHHHHHHHhcCC
Q 005136 426 YLEHKQFDLVFAVFNEMLLSGEI-PNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPY---DVFLGTALTDTYAKSGD 501 (712)
Q Consensus 426 ~~~~~~~~~a~~~~~~~~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 501 (712)
+...|++++|...|+.+.+.+.+ |+.. ...+..++...|++++|...++.+.+..... .......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 34556677778888887776532 3221 1123456666677777777666655432110 01223333334445555
Q ss_pred hHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhcccCcHHHHHHHHHhc
Q 005136 502 IESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE---LTILSVLFACSHSGLVDKGLKYFNSM 578 (712)
Q Consensus 502 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~ 578 (712)
+++|.++++.+...++..... +. ...-.|+. ..+..+...+...|+.++|++.++++
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~-----------------~~---~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~a 385 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRL-----------------YG---SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAREL 385 (765)
T ss_pred HHHHHHHHHHHhhcCCceEee-----------------cC---CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555554443211110000 00 00012332 23445566677778888888888877
Q ss_pred chhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 579 EPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 579 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
.. ..| +...+..++.++...|++++|++.+++. ...|+ ...+...+..+...|++++|+..++++++..|+++.
T Consensus 386 l~---~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 386 AY---NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 63 255 6777778888888888888888888876 44565 445555555677888888888888888888888775
Q ss_pred hHH
Q 005136 656 GYV 658 (712)
Q Consensus 656 ~~~ 658 (712)
+..
T Consensus 463 ~~~ 465 (765)
T PRK10049 463 VQR 465 (765)
T ss_pred HHH
Confidence 443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-17 Score=163.51 Aligned_cols=609 Identities=11% Similarity=0.075 Sum_probs=377.8
Q ss_pred chhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcC----CCCcchHHHHHHHHHhcCChHHHHHHH
Q 005136 35 NLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLN----GFDLVVHNCMINANIQWGNLEEAQRLF 110 (712)
Q Consensus 35 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~ 110 (712)
+.....+.++..+...|+.|+..+|.++|..||..|+++.|. +|..|. +-+..+|+.++.++.+.++.+.+.
T Consensus 4 e~kf~ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--- 79 (1088)
T KOG4318|consen 4 EVKFFPTNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--- 79 (1088)
T ss_pred ccccCcchHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---
Confidence 344455788999999999999999999999999999999999 888873 345679999999999999988775
Q ss_pred hhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCHhhHHH
Q 005136 111 DGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLL-ESGVKPNEVTFSS 189 (712)
Q Consensus 111 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ 189 (712)
+|...+|+.|..+|.+.||+.- |+...+ ....++..+...|.-..-..++.... ..+.-||..+
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~----fe~veq----dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--- 144 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLIL----FEVVEQ----DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--- 144 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHH----HHHHHH----HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---
Confidence 7889999999999999999765 222111 23345566666776666666665533 2234455543
Q ss_pred HHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHc-cCChHHHHHHHhhcCC-CCcchHHHHHHHHHhcCCHH
Q 005136 190 ICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLK-MGEVDLARSVFDRMEK-RDVVSWTVILDVFIEMGDLG 267 (712)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~ 267 (712)
++.-....|.++.+.+++..+-...... ....+++-+.. ...+++-..+.....+ ++..+|..++......|+.+
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence 3333444556666666554432111000 11111222222 2345555555555555 88888999999999999999
Q ss_pred HHHHHHhhCCCCC----ceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHH-------
Q 005136 268 EARRIFDEMPERN----EVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGM------- 336 (712)
Q Consensus 268 ~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~------- 336 (712)
.|..++.+|.+.. ..-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+..+.+.|....+.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~h 298 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAH 298 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhh
Confidence 9999999998743 2223344433 7788888899999999999999999988877776643321110
Q ss_pred -----------------HHHHH---------H---HHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC----C
Q 005136 337 -----------------HVHAH---------V---LKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDV----A 383 (712)
Q Consensus 337 -----------------~~~~~---------~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~ 383 (712)
+.++. . .-.|+.....+|...+. ...+|.-++..++-..+..... .
T Consensus 299 g~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~ 377 (1088)
T KOG4318|consen 299 GFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQ 377 (1088)
T ss_pred hhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcc
Confidence 01100 0 00122222333332222 1224555555555544432211 1
Q ss_pred ceeeHHHHHHHHhcc----------------------CChhhHHHHhhcCCCC----------------Cc---------
Q 005136 384 HVVSWNSMIGGYGLN----------------------GQMEEAKELFDNMPKR----------------ND--------- 416 (712)
Q Consensus 384 ~~~~~~~l~~~~~~~----------------------~~~~~a~~~~~~~~~~----------------~~--------- 416 (712)
++..+..++..|.+. .+..+..++.....+. ..
T Consensus 378 ~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ 457 (1088)
T KOG4318|consen 378 NVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHL 457 (1088)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhH
Confidence 233444444333221 1112222222222110 01
Q ss_pred --ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH--cCCCCchhhHHHH
Q 005136 417 --VSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIK--LGFPYDVFLGTAL 492 (712)
Q Consensus 417 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l 492 (712)
..-+.++..++..-+..+++..-+.....- -| ..|..+|.-++.....+.|..+.+++.. ..+..+...+..+
T Consensus 458 irdi~~ql~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l 534 (1088)
T KOG4318|consen 458 IRDIANQLHLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSL 534 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHH
Confidence 123445555666555555554333333221 11 5788999999999999999999988864 3455677788889
Q ss_pred HHHHHhcCChHHHHHHhccCCCC-----C-cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC
Q 005136 493 TDTYAKSGDIESSRRVFDRMPDK-----N-EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSG 566 (712)
Q Consensus 493 ~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 566 (712)
.+.+.+.+....+..++.++.+. + ..++-.+++..+..|+.+...++.+-+...|+..+ .-++....+.+
T Consensus 535 ~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkd 610 (1088)
T KOG4318|consen 535 QDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKD 610 (1088)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeecc
Confidence 99999999999999999988742 1 22344566777888999988888888888776553 33444556777
Q ss_pred cHHHHHHHHHhcchhcCCCC-chHHHHHHHH------------------HhhhcCChHHHHHHHHhCCC-----------
Q 005136 567 LVDKGLKYFNSMEPIYNIKP-NGRHYTCVVD------------------MLSRSGRLSEAEDFINSMPF----------- 616 (712)
Q Consensus 567 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~------------------~~~~~g~~~~A~~~~~~~~~----------- 616 (712)
+...|.+.++....++...| +...+..++. .|.++|+..+|.++.+.-+.
T Consensus 611 d~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~d 690 (1088)
T KOG4318|consen 611 DQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTD 690 (1088)
T ss_pred chhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccc
Confidence 88888888777766655555 3444444333 26677777777777765421
Q ss_pred ----CC---------CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHH
Q 005136 617 ----EP---------DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRK 678 (712)
Q Consensus 617 ----~p---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 678 (712)
.| +......++..|.+.|+++.|..++.+.- ..| ++.....|+.++.+...-.+.-+++.
T Consensus 691 e~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q-V~k-~~~~l~~LAsIlr~~n~evdvPe~q~ 763 (1088)
T KOG4318|consen 691 EGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ-VSK-SPMKLFHLASILRRMNEEVDVPEIQA 763 (1088)
T ss_pred cCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc-CCc-chHHHHHHHHHHHhhchhccchhHHH
Confidence 11 01112346667777888888888887765 333 36677777777776665444444433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-15 Score=156.57 Aligned_cols=438 Identities=11% Similarity=0.051 Sum_probs=255.2
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHh-hHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChH
Q 005136 158 GFVQNGFSFEALKLFLKLLESGVKPNEV-TFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVD 236 (712)
Q Consensus 158 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 236 (712)
...+.|+++.|++.|++..+. .|+.. ....++..+...|+.++|+..++.... ..+........+...+...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHH
Confidence 346777777777777777764 33321 122666666666777777777777661 11122222333345666667777
Q ss_pred HHHHHHhhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHh--cCChhHHHHHHHHHHhCC
Q 005136 237 LARSVFDRMEK--R-DVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQ--SGYPEEAFRLFRQMTRYS 311 (712)
Q Consensus 237 ~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~ 311 (712)
.|.++|+++.+ | +...+..++..+...++.++|+..++++...++.....+..++.. .++..+|++.++++.+..
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 77777777765 2 233455555666666777777777776665433322223333333 344444677777766632
Q ss_pred CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHH
Q 005136 312 FKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSM 391 (712)
Q Consensus 312 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 391 (712)
+-+...+..+..++.+.|-...|.++...-. +.++-...... ..+.|.+..+...........-+.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~~~~r~~-- 265 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ERDAAAEQVRMAVLPTRSETERFD-- 265 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HHHHHHHHHhhcccccccchhhHH--
Confidence 2244555666666666666666665544322 11110000000 000000000000000000000000
Q ss_pred HHHHhccCChhhHHHHhhcCCC-----CCcc-----cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005136 392 IGGYGLNGQMEEAKELFDNMPK-----RNDV-----SWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCAS 461 (712)
Q Consensus 392 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~ 461 (712)
-.+.|+.-++.+.. |... +..-.+-++...+++.++++.|+.+...|.+....+-..+.++|
T Consensus 266 --------~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 266 --------IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred --------HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 11222222222221 2111 12233445666777777788888887777654455667777778
Q ss_pred hccCchHHHHHHHHHHHHcC-----CCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCc------------------c
Q 005136 462 ASVASLEKGKDLHGKIIKLG-----FPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNE------------------I 518 (712)
Q Consensus 462 ~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------~ 518 (712)
...+.+++|..++..+.... .+++......|.-+|...+++++|..+++.+.+..+ .
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 88888888888887776532 122333346677777788888888888777653111 1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVD 596 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 596 (712)
....++..+...|+..+|++.++++.. ..| |......+...+...|.+..|.+.++.+. .+.| +..+....+.
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~~~~~~~~~~ 492 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRSLILERAQAE 492 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCccHHHHHHHHH
Confidence 234467778899999999999999988 455 56777888889999999999999998776 4577 6777888899
Q ss_pred HhhhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 005136 597 MLSRSGRLSEAEDFINSM-PFEPDSNAWAS 625 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 625 (712)
++...|++.+|..+.+++ ...|+......
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 999999999999998877 33455443333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-14 Score=132.95 Aligned_cols=430 Identities=12% Similarity=0.115 Sum_probs=282.5
Q ss_pred chhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHH---hcCCChhHhHHHHhhcCC---CCcchHHHH
Q 005136 20 YIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMY---LGSRKSLEANEIVKDLNG---FDLVVHNCM 93 (712)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~---~~~~~~~~l 93 (712)
...+=+.|++ ...+|.+..+--+|+.|...|.+.+..+...|.+.- ..+.-+..-.+.|-.+.. .+..+|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--- 190 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--- 190 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc---
Confidence 3445667776 456788999999999999999998888877776643 333333333455555533 444566
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCC----CCcccHHHHHHHHHhcCChhHHH
Q 005136 94 INANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPF----QNVISWTAAICGFVQNGFSFEAL 169 (712)
Q Consensus 94 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~ 169 (712)
+.|++.+ ++-+...+.+.++..+|.++++--..+.|.+++++... -+..+||.+|.+-. +..-.
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccH
Confidence 3455433 55556667778899999999999999999999987654 35567777776532 23337
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhcccchHH----HHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHH-HHHHHhh
Q 005136 170 KLFLKLLESGVKPNEVTFSSICKACAEINDFRL----GLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDL-ARSVFDR 244 (712)
Q Consensus 170 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~ 244 (712)
+++.+|....+.||..|||+++.+.++.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ |..++..
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 899999999999999999999999999997665 56778889999999999999999999998887644 3444433
Q ss_pred cCC------------CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC--------C---CceeHHHHHHHHHhcCChhHHH
Q 005136 245 MEK------------RDVVSWTVILDVFIEMGDLGEARRIFDEMPE--------R---NEVSWSVMIARYNQSGYPEEAF 301 (712)
Q Consensus 245 ~~~------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~ 301 (712)
+.. .|...+..-+..|....+.+-|.++-.-+.. + ...-|..+....++....+...
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 2444667778888888888888777654432 1 2234667777888888999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCC
Q 005136 302 RLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKD 381 (712)
Q Consensus 302 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 381 (712)
..|+.|.-+-+-|+..+...++++....+.++-..++|.+++..|.........-++..+++..-
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~--------------- 483 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL--------------- 483 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC---------------
Confidence 99999998888899999999999999999999999999999888755444444333333333220
Q ss_pred CCcee---eHHHHHHHHhccCChhhHHHHhhcCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHH
Q 005136 382 VAHVV---SWNSMIGGYGLNGQMEEAKELFDNMPK--RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGE----IPNKS 452 (712)
Q Consensus 382 ~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~----~p~~~ 452 (712)
.|+.. -+.....-++ ....+.....-.++.+ -.....+..+..+.+.|+.++|.++|.-+...+- .|...
T Consensus 484 hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~ln 562 (625)
T KOG4422|consen 484 HPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLN 562 (625)
T ss_pred CCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchh
Confidence 01111 1111111110 0001111111111111 1334455555556666666666666666654431 23333
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHcC
Q 005136 453 TFSSVLCASASVASLEKGKDLHGKIIKLG 481 (712)
Q Consensus 453 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 481 (712)
...-+++.....++...|...++.+...+
T Consensus 563 Am~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 563 AMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 34444555555555666666665554444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.4e-12 Score=123.18 Aligned_cols=511 Identities=14% Similarity=0.135 Sum_probs=337.4
Q ss_pred HHHHHhhCCCC---ChhHHHHHHHHHHccCChHHHHHHhhhCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 005136 106 AQRLFDGMPER---NEVSWTALISGFMKHGRVEESMWYFERNP---FQNVISWTAAICGFVQNGFSFEALKLFLKLLESG 179 (712)
Q Consensus 106 A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 179 (712)
=.+++++..+. ++..|... ...-+.++|+-++.+.. +.+. .|.-++++...|+.|..++++.++.
T Consensus 365 K~RVlRKALe~iP~sv~LWKaA----VelE~~~darilL~rAveccp~s~----dLwlAlarLetYenAkkvLNkaRe~- 435 (913)
T KOG0495|consen 365 KKRVLRKALEHIPRSVRLWKAA----VELEEPEDARILLERAVECCPQSM----DLWLALARLETYENAKKVLNKAREI- 435 (913)
T ss_pred HHHHHHHHHHhCCchHHHHHHH----HhccChHHHHHHHHHHHHhccchH----HHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 34555555542 23333332 33455666777776533 2233 3444556667788888888888875
Q ss_pred CCCCHhhHHHHHHHHhcccchHHHHHHHHHHHH----hCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHH
Q 005136 180 VKPNEVTFSSICKACAEINDFRLGLSVFGLIFK----AGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTV 255 (712)
Q Consensus 180 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 255 (712)
++.+...|.+-...--..|+.+...+++...+. .|+..+..-|-.=...|-..|..-.+..+...+
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~av---------- 505 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAV---------- 505 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHH----------
Confidence 666777777766666677888887777765433 455555555554444444444444444443322
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChhh
Q 005136 256 ILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKP-NTSCFSIVLSALASLKALRS 334 (712)
Q Consensus 256 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~ 334 (712)
..-|.-+ +.-..+|..-...|.+.+.++-|..+|...++ +.| +...+......=-..|..+.
T Consensus 506 -----igigvEe----------ed~~~tw~~da~~~~k~~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 506 -----IGIGVEE----------EDRKSTWLDDAQSCEKRPAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred -----Hhhcccc----------chhHhHHhhhHHHHHhcchHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHH
Confidence 2111100 01122455555555566666666666655554 333 23334444433344455666
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCC--
Q 005136 335 GMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMP-- 412 (712)
Q Consensus 335 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 412 (712)
...+++.....- +-....|.....-+-..|++..|+.++....+..+.+...|..-+.....+.+++.|..+|.+..
T Consensus 569 l~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 569 LEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 666666655542 22334455555555566666666666666666666666666666666666666666666666554
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHH
Q 005136 413 KRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNK-STFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTA 491 (712)
Q Consensus 413 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 491 (712)
.+....|.--+..--..++.++|.+++++.++. -|+. ..|..+-..+.+.++.+.|...|..=.+. ++..+..+-.
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWll 724 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLL 724 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHH
Confidence 244555655566666667777778888887774 4554 45666666777788888887776554432 4667788888
Q ss_pred HHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcH
Q 005136 492 LTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLV 568 (712)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 568 (712)
|...-.+.|.+-.|..++++.. ..+...|-..+..-.+.|+.+.|..++.+..+. .+.+...|.--|...-+.+.-
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccc
Confidence 8888899999999999999876 346778999999999999999999999888874 344556677777777777776
Q ss_pred HHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 005136 569 DKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNL 646 (712)
Q Consensus 569 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 646 (712)
...+..+++.. .|++....++..+....++++|.+.|.+. ...|| ..+|..+...+.++|.-+.-.+++.+.
T Consensus 804 Tks~DALkkce------~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 804 TKSIDALKKCE------HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred hHHHHHHHhcc------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666666554 47788889999999999999999999998 66666 677888888899999999999999999
Q ss_pred hccCCCCCchHHHHHHH
Q 005136 647 WKLAEEHPAGYVLLSNI 663 (712)
Q Consensus 647 ~~~~p~~~~~~~~l~~~ 663 (712)
..-+|.+...+....+-
T Consensus 878 ~~~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 878 ETAEPTHGELWQAVSKD 894 (913)
T ss_pred hccCCCCCcHHHHHhhh
Confidence 99999988777665544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.8e-16 Score=142.43 Aligned_cols=472 Identities=12% Similarity=0.105 Sum_probs=294.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhH-HHHHHHHhcccchHHHHHHHHHHHHhCCCCCc----cHHHHHHHH
Q 005136 154 AAICGFVQNGFSFEALKLFLKLLESGVKPNEVTF-SSICKACAEINDFRLGLSVFGLIFKAGFEKHV----SVCNSLITL 228 (712)
Q Consensus 154 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~ 228 (712)
.+..-|..+....+|+..|+-..+...-|+...+ ..+...+.+.+.+.+|.++++..+..-+..+- .+.+.+...
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 3445566677888999999888887777776543 23556677888899999999988876543333 334444455
Q ss_pred HHccCChHHHHHHHhhcCC--CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC----CCc--------eeHHHHHHHHHhc
Q 005136 229 SLKMGEVDLARSVFDRMEK--RDVVSWTVILDVFIEMGDLGEARRIFDEMPE----RNE--------VSWSVMIARYNQS 294 (712)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~--------~~~~~l~~~~~~~ 294 (712)
+.+.|+++.|+.-|+...+ |+..+-..|+-++..-|+.++..+.|.+|.. +|. ..-..|+.--.++
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 7788999999999998776 6666655666666777888888888887753 111 1111222221111
Q ss_pred CC-----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 005136 295 GY-----------PEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSK 363 (712)
Q Consensus 295 ~~-----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 363 (712)
.. .++++-.--+++.--+.|+-.. ..+-+.+.+.......+..+.. -.-.-.+.+
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~la~dle--i~ka~~~lk 431 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAELAIDLE--INKAGELLK 431 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhhhhhhhh--hhHHHHHHh
Confidence 11 1111111111111112222100 0111122221111111111111 112235788
Q ss_pred cCChHHHHHHHHhhhcCCCC--ceeeHHHHHHHHhc-cCChhhHHHHhhcCCCC---CcccHHHHHHHHHhcCChhHHHH
Q 005136 364 CGETKDGRLVFDSIVEKDVA--HVVSWNSMIGGYGL-NGQMEEAKELFDNMPKR---NDVSWSAIISGYLEHKQFDLVFA 437 (712)
Q Consensus 364 ~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~ 437 (712)
.|+++.|.++++-+.+.+.. +..+-|..+--|.+ ..++..|...-+..... ++.....-.+.....|++++|.+
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHH
Confidence 99999999999888776642 22222222222333 33566664444433322 22222222233334455555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---C
Q 005136 438 VFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---D 514 (712)
Q Consensus 438 ~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~ 514 (712)
.|++.+... ..-....|+ +.-.+...|++++|...|-.+. .
T Consensus 512 ~ykeal~nd-----------------------------------asc~ealfn-iglt~e~~~~ldeald~f~klh~il~ 555 (840)
T KOG2003|consen 512 FYKEALNND-----------------------------------ASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILL 555 (840)
T ss_pred HHHHHHcCc-----------------------------------hHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHH
Confidence 555554432 111111111 2223455677777777766554 3
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHH
Q 005136 515 KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTC 593 (712)
Q Consensus 515 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 593 (712)
.+..+...+...|....+...|++++.+.... ++.|...+..|...|-+.|+-..|.+.+-+-- ..-| +..+...
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy---ryfp~nie~iew 631 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY---RYFPCNIETIEW 631 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc---cccCcchHHHHH
Confidence 45556666777888888999999999887773 34456778889999999999999988776543 4556 8999999
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH-HhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 005136 594 VVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLLSG-CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWI 671 (712)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 671 (712)
|+..|....-+++|+.+|++. -+.|+..-|..++.. +.+.|+++.|..+++......|++...+..|..++...|. .
T Consensus 632 l~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl-~ 710 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL-K 710 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc-h
Confidence 999999999999999999998 568999999988877 4689999999999999999999999999999999998885 3
Q ss_pred hHHHHHHHH
Q 005136 672 DAMNVRKLM 680 (712)
Q Consensus 672 eA~~~~~~~ 680 (712)
+|.++-+++
T Consensus 711 d~key~~kl 719 (840)
T KOG2003|consen 711 DAKEYADKL 719 (840)
T ss_pred hHHHHHHHH
Confidence 455554443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-13 Score=126.17 Aligned_cols=435 Identities=12% Similarity=0.123 Sum_probs=283.8
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHh--cccchHHH-HHHHHHHHHhCCCCCccHHHHH
Q 005136 149 VISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACA--EINDFRLG-LSVFGLIFKAGFEKHVSVCNSL 225 (712)
Q Consensus 149 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l 225 (712)
+.+=|.++.. ...|....+.-+|++|.+.|+..+...-..|++..+ .+.+..-+ .+.|-.|.+.| ..+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3455555553 557889999999999999998877766555554332 33332211 22233333333 2222232
Q ss_pred HHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCC----CceeHHHHHHHHHhcCChhHHH
Q 005136 226 ITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPER----NEVSWSVMIARYNQSGYPEEAF 301 (712)
Q Consensus 226 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~ 301 (712)
+.|++.+ ++-+.......++..+|.++++-...+.|.+++++.... +..+||.+|.+-.- ..-.
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccH
Confidence 3344333 555555567789999999999999999999999988753 55577877765432 2237
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChhh----HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHH-HHHHHHh
Q 005136 302 RLFRQMTRYSFKPNTSCFSIVLSALASLKALRS----GMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKD-GRLVFDS 376 (712)
Q Consensus 302 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~ 376 (712)
+++.+|.+..+.||..|||.++.+.++.|+++. |.+++.+|++.|++|...+|..++..+++-++..+ |..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 899999999999999999999999999997665 46788889999999999999999999998888755 4444444
Q ss_pred hh----cCC-----CCceeeHHHHHHHHhccCChhhHHHHhhcCCC--------C---CcccHHHHHHHHHhcCChhHHH
Q 005136 377 IV----EKD-----VAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK--------R---NDVSWSAIISGYLEHKQFDLVF 436 (712)
Q Consensus 377 ~~----~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~ 436 (712)
+. .+. +.+...+..-+..|.+..+.+-|..+-.-+.. + ...-|..+....|+....+.-.
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 222 22455667777888888888877766554442 1 1234666778888888899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCC
Q 005136 437 AVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKN 516 (712)
Q Consensus 437 ~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 516 (712)
..|+.|.-.-+-|+..+...++++....+.++-...+|..++..|..........+...+++.. ..|+
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~ 486 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPL 486 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCC
Confidence 9999998887889999999999999999999999999988888775555544444444444332 0122
Q ss_pred cchHHHHHHHHH--HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHH--
Q 005136 517 EISWTVMVRGLA--ESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYT-- 592 (712)
Q Consensus 517 ~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-- 592 (712)
...-..+-.... ...-.+.....-.++.+..+.| ...+.++-.+.+.|..++|.++|..+.++..--|-....+
T Consensus 487 tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm 564 (625)
T KOG4422|consen 487 TPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAM 564 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhH
Confidence 111111111111 0111112222334455433333 3445555556788888888888887754444444444444
Q ss_pred -HHHHHhhhcCChHHHHHHHHhC
Q 005136 593 -CVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 593 -~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
.+.+.-.+.+....|..+++-+
T Consensus 565 ~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 565 AELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Confidence 4444555666777777776655
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.4e-12 Score=116.89 Aligned_cols=425 Identities=13% Similarity=0.169 Sum_probs=235.1
Q ss_pred cchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCC--CCcc-hHHHHHHHHHhcCCHHHHHHHHh
Q 005136 198 NDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEK--RDVV-SWTVILDVFIEMGDLGEARRIFD 274 (712)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~ 274 (712)
+++..|..+|+..+... .-+...+-..+.+-.++..+..|..++++... |.+. .|.-.+..--..|++..|.++|+
T Consensus 87 ~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 33444444444444332 22333444444444444444555555544433 2211 23333333334455555555555
Q ss_pred hCC--CCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHc-CC-CCc
Q 005136 275 EMP--ERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKI-GI-EKD 350 (712)
Q Consensus 275 ~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~-~~~ 350 (712)
+-. +|+..+|.+.|..-.+-+..+.|..+|+...- +.|+..+|......=.+.|....+..+++...+. |- ..+
T Consensus 166 rW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 166 RWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred HHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 543 36666666666666666666666666666654 4566666666666666666666666666665553 11 112
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCc--eeeHHHHHHHHhccCChhhHHHHh--------hcCCCC---Ccc
Q 005136 351 VFISNALIDLYSKCGETKDGRLVFDSIVEKDVAH--VVSWNSMIGGYGLNGQMEEAKELF--------DNMPKR---NDV 417 (712)
Q Consensus 351 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~--------~~~~~~---~~~ 417 (712)
...+.+....-.++..++.|..+|+-..+.-|.+ ...|..+..---+-|+.....+.. +.+.+. |-.
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 3445555555556666777777777666554422 233333333323334433322221 222222 445
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--H---HHHH-HH-H---HhccCchHHHHHHHHHHHHcCCCCchh
Q 005136 418 SWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKS--T---FSSV-LC-A---SASVASLEKGKDLHGKIIKLGFPYDVF 487 (712)
Q Consensus 418 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~--~---~~~l-l~-~---~~~~~~~~~a~~~~~~~~~~~~~~~~~ 487 (712)
+|...++.--..|+.+...++|++.+.. ++|-.. . |.-| |. + -....+.+.+.++++...+. +|....
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkF 401 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKF 401 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccc
Confidence 6666777777778888888888888875 455321 1 1111 11 1 12456777777777777772 444555
Q ss_pred hHHHHHHHH----HhcCChHHHHHHhccCCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 005136 488 LGTALTDTY----AKSGDIESSRRVFDRMPD--KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLF 560 (712)
Q Consensus 488 ~~~~l~~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 560 (712)
+|..+--+| .++.++..|.+++..... |...++...|..-.+.++++...+++++.++ ..| |..+|.....
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAE 479 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHH
Confidence 555444333 356677777777776653 4555666666666777777777777777777 344 4466666666
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLLSG 629 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 629 (712)
.=...|+.+.|..+|+-+.+...+......|...++.-...|.++.|..+++++ ...+-...|.++...
T Consensus 480 lE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~f 549 (677)
T KOG1915|consen 480 LETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKF 549 (677)
T ss_pred HHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 666677777777777777643333333445555555556677777777777776 333444456555443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-16 Score=149.19 Aligned_cols=256 Identities=14% Similarity=0.168 Sum_probs=112.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 005136 422 IISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSS-VLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSG 500 (712)
Q Consensus 422 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 500 (712)
+...+.+.|++++|++++++......+|+...|.. +...+...++++.|...++++...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 34555566666666777765544432344444443 334555677788888888887765422 55566667766 6888
Q ss_pred ChHHHHHHhccCC--CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcccCcHHHHHHHHHh
Q 005136 501 DIESSRRVFDRMP--DKNEISWTVMVRGLAESGYAKESINLFEEMEKTS-ITPNELTILSVLFACSHSGLVDKGLKYFNS 577 (712)
Q Consensus 501 ~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 577 (712)
++++|.+++...- .+++..+..++..+...++++++.++++.+.... ..++...|..+...+.+.|+.++|++.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999988887664 3456677788888999999999999999987643 244666788888899999999999999999
Q ss_pred cchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 578 MEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMP--FEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 578 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
..+. .| |......++..+...|+.+++.++++... ...++..+..+..++...|+.++|..+++++.+..|+||
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9844 78 68888999999999999999888887762 234556778888889999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 655 AGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 655 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
.++..++.++...|+.++|.++.+++.+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-12 Score=123.86 Aligned_cols=215 Identities=13% Similarity=0.116 Sum_probs=175.3
Q ss_pred hccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHH
Q 005136 462 ASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESIN 538 (712)
Q Consensus 462 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~ 538 (712)
.-.|+.-.+..-++..++....+ ...|-.+..+|....+.++-+..|+... +.++.+|..-...+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 34678888888899888865333 3336667777999999999999999876 3467788888888888999999999
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CC
Q 005136 539 LFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PF 616 (712)
Q Consensus 539 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 616 (712)
-|++.+. +.|+. ..|..+.-+..+.+.++++...|++...+ ++..+..|+..+.++...+++++|.+.|+.. ..
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999998 67754 56777777778899999999999999854 3346889999999999999999999999986 44
Q ss_pred CCC-------H-HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 005136 617 EPD-------S-NAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMT 681 (712)
Q Consensus 617 ~p~-------~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 681 (712)
.|+ . ...+..+....-.+++..|+.+++++.+++|....++..|+.+..++|+.++|+++|++..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444 1 1122233334456999999999999999999999999999999999999999999999754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.3e-13 Score=123.63 Aligned_cols=320 Identities=12% Similarity=0.139 Sum_probs=150.7
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHH
Q 005136 249 DVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFS--IVLSAL 326 (712)
Q Consensus 249 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~ 326 (712)
|...+......+.+.|....|+..|......-+..|.+.+....-..+.+.+..+ . .|.+.|...+. .+..++
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~-~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----V-VGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----H-hcCcccchHHHHHHHHHHH
Confidence 3333344444556777788888888777665455554444332222222222111 1 12222221111 233344
Q ss_pred hccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC---CceeeHHHHHHHHhccCChhh
Q 005136 327 ASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDV---AHVVSWNSMIGGYGLNGQMEE 403 (712)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 403 (712)
......+++.+-.......|++.+...-+....+.-...+++.|+.+|+++.+.+| .+..+|..++-.--......-
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 44456677777777777777776766666666677778888999999998888876 355566555433222111111
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC
Q 005136 404 AKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFP 483 (712)
Q Consensus 404 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 483 (712)
--...-.+.+-.+.|...+.+-|.-.++.++|...|++.++.+ |.
T Consensus 318 LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~--------------------------------- 362 (559)
T KOG1155|consen 318 LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PK--------------------------------- 362 (559)
T ss_pred HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cc---------------------------------
Confidence 1111111222233344444444444444444444444444322 11
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 005136 484 YDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVL 559 (712)
Q Consensus 484 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 559 (712)
....++.+..-|....+...|.+-++... +.|-..|-.|.++|...+-..=|+-.|++..+ ++| |...|..|.
T Consensus 363 -~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG 439 (559)
T KOG1155|consen 363 -YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALG 439 (559)
T ss_pred -hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHH
Confidence 11122222233333344444444444333 22333444444455444444444444444444 333 223444444
Q ss_pred HHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHh
Q 005136 560 FACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINS 613 (712)
Q Consensus 560 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 613 (712)
.+|.+.++.++|++.|.+... .-+.+...+..|++.|.+.++.++|...+++
T Consensus 440 ~CY~kl~~~~eAiKCykrai~--~~dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 440 ECYEKLNRLEEAIKCYKRAIL--LGDTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHHhccHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444444445555544444431 1112334444444444444444444444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.5e-11 Score=110.29 Aligned_cols=436 Identities=14% Similarity=0.157 Sum_probs=285.2
Q ss_pred hhHHHHHHHHHHccCChHHHHHHhhhCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh-hHHHHHHH
Q 005136 118 EVSWTALISGFMKHGRVEESMWYFERNP---FQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEV-TFSSICKA 193 (712)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~ 193 (712)
...|-...+.-..++++..|+.+|++.. ..+...|...+..-.++.....|..++++.... -|.+. .+...+..
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHH
Confidence 3344444555556777777888887643 356667777777777888888888888877753 33332 23333444
Q ss_pred HhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcC--CCCcchHHHHHHHHHhcCCHHHHHH
Q 005136 194 CAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRME--KRDVVSWTVILDVFIEMGDLGEARR 271 (712)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~ 271 (712)
--..|+...|.++|+.-.+ ..|+...+++.|..-.+-..++.|..++++.. .|++.+|....+--.+.|+.
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~----- 223 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNV----- 223 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcH-----
Confidence 4456777777777776554 45777777777777777777777777777554 24554544444444444444
Q ss_pred HHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCChhhHHHHHHHHHHcCC
Q 005136 272 IFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTS----CFSIVLSALASLKALRSGMHVHAHVLKIGI 347 (712)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 347 (712)
..|..+|....+. ..|.. .|.+....=.+...++.|.-++...++.-
T Consensus 224 --------------------------~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~- 274 (677)
T KOG1915|consen 224 --------------------------ALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI- 274 (677)
T ss_pred --------------------------HHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 4444444444331 11111 12222222223445555555555555431
Q ss_pred CCc--HHHHHHHHHHHHhcCChHHHH--------HHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcc
Q 005136 348 EKD--VFISNALIDLYSKCGETKDGR--------LVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDV 417 (712)
Q Consensus 348 ~~~--~~~~~~l~~~~~~~g~~~~A~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 417 (712)
+.+ ...|..+...--+.|+..... --++.+...++-+..+|--.++.....|+.+...+++++....-+.
T Consensus 275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp 354 (677)
T KOG1915|consen 275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP 354 (677)
T ss_pred CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence 111 334444444444445433322 2356677778888899999999999999999999999988742111
Q ss_pred -----cHHHHH--------HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCchHHHHHHHHHHHHc
Q 005136 418 -----SWSAII--------SGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASA----SVASLEKGKDLHGKIIKL 480 (712)
Q Consensus 418 -----~~~~l~--------~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~ 480 (712)
.|...| -.-....+.+.+.++|+..++. ++....||.-+--.|+ ++.++..|.+++...+
T Consensus 355 ~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI-- 431 (677)
T KOG1915|consen 355 ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI-- 431 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--
Confidence 122222 2224678999999999999883 5556677776655554 6789999999988765
Q ss_pred CCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHH
Q 005136 481 GFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSI-TPNELTIL 556 (712)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~ 556 (712)
|.-|...+|...++.-.+.++++.+..+++.... .+..+|......-...|+.+.|..+|+-.++... ......|.
T Consensus 432 G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk 511 (677)
T KOG1915|consen 432 GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK 511 (677)
T ss_pred ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH
Confidence 5678889999999999999999999999998874 3666888888888899999999999999887431 22234455
Q ss_pred HHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHH
Q 005136 557 SVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDM 597 (712)
Q Consensus 557 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 597 (712)
..+..-...|.+++|..+++++.+. .+...+|-.++..
T Consensus 512 aYIdFEi~~~E~ekaR~LYerlL~r---t~h~kvWisFA~f 549 (677)
T KOG1915|consen 512 AYIDFEIEEGEFEKARALYERLLDR---TQHVKVWISFAKF 549 (677)
T ss_pred HhhhhhhhcchHHHHHHHHHHHHHh---cccchHHHhHHHH
Confidence 6666666789999999999999844 4555566655543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.9e-12 Score=119.24 Aligned_cols=330 Identities=13% Similarity=0.083 Sum_probs=250.8
Q ss_pred cCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcc-cHHHHH
Q 005136 345 IGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDV-SWSAII 423 (712)
Q Consensus 345 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~ 423 (712)
.+...|...+-.....+.+.|....|+..|......-|-.-.+|..|.... .+.+.+..+.......+.. .-..+.
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~li---t~~e~~~~l~~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELI---TDIEILSILVVGLPSDMHWMKKFFLK 234 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhh---chHHHHHHHHhcCcccchHHHHHHHH
Confidence 355567766666677788899999999999999887744444554444433 3334443333333322211 122345
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCC--CCchhhHHHHHHHHHhcCC
Q 005136 424 SGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGF--PYDVFLGTALTDTYAKSGD 501 (712)
Q Consensus 424 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 501 (712)
.++-...+.+++..-.......|.+-+...-+....+.-...++++|+.+|+++.+... -.|..+|..++-.-..+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 56667778889999999999988877777777777777888999999999999998731 1255666666533222222
Q ss_pred hHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcch
Q 005136 502 IESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEP 580 (712)
Q Consensus 502 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 580 (712)
+.--.+..-.+.+-.+.|..++.+-|.-.++.++|+..|++..+ +.|.. ..|+.+..-|....+...|++-++.+.
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv- 391 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV- 391 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH-
Confidence 22222222233344566677778888899999999999999999 67765 557777788999999999999999998
Q ss_pred hcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchH
Q 005136 581 IYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGY 657 (712)
Q Consensus 581 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 657 (712)
.+.| |-..|.-|+++|.-.+.+.-|+-+|++. ..+| |+..|..+..+|.+.++.++|+..+++++.....+..++
T Consensus 392 --di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 392 --DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred --hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 5678 8889999999999999999999999998 4555 688999999999999999999999999999888788999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 658 VLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 658 ~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
..|+++|.+.++.++|...+++-++
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999998776
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-13 Score=133.65 Aligned_cols=283 Identities=11% Similarity=0.084 Sum_probs=173.2
Q ss_pred ChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC---CceeeHHHHHHHHhccCChhhHHHH
Q 005136 331 ALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDV---AHVVSWNSMIGGYGLNGQMEEAKEL 407 (712)
Q Consensus 331 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 407 (712)
+..+|...|..+.+. +.-+..+...+..+|...+++++|+.+|+.+.+..+ .+...|.+.+-.+-+.-...---+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 456677777763332 333446666777888888888888888888877665 3555666555433221111110011
Q ss_pred hhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchh
Q 005136 408 FDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVF 487 (712)
Q Consensus 408 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 487 (712)
+-.+....+.+|..+.++|.-+++++.|++.|++.++. .|+
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~------------------------------------- 453 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPR------------------------------------- 453 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCc-------------------------------------
Confidence 11111223444444444444444444444444444432 120
Q ss_pred hHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccC
Q 005136 488 LGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE-LTILSVLFACSHSG 566 (712)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 566 (712)
...+|+.+..-+.....+|.|...|+..+. +.|.. ..|..+...|.+.+
T Consensus 454 ----------------------------faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 454 ----------------------------FAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred ----------------------------cchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccc
Confidence 112333333334444555555555555544 33332 34556666677777
Q ss_pred cHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHH
Q 005136 567 LVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAV 643 (712)
Q Consensus 567 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 643 (712)
+++.|.-.|+++. .+.| +......++..+.+.|+.++|+.+++++ ...| ++......+..+...+++++|...+
T Consensus 504 k~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~L 580 (638)
T KOG1126|consen 504 KLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQEL 580 (638)
T ss_pred hhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHH
Confidence 7777777777766 5567 6677777788888888888888888877 2233 3444444555566788889999999
Q ss_pred HHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 644 KNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 644 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
+++.++-|++..++..+|++|.+.|+.+.|+..+..+.+-.++
T Consensus 581 EeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 581 EELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 9999999999999999999999999999999988888775443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.6e-12 Score=116.03 Aligned_cols=256 Identities=8% Similarity=0.102 Sum_probs=184.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh--ccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 005136 424 SGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASA--SVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGD 501 (712)
Q Consensus 424 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 501 (712)
..+.+.|+++.|+++++-+.+..-+.-...-+.+-..+. --.++..|.++-+...... ..+......-.......|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 346778888888888887766543333322222222222 2335556666655544321 1122222222223345689
Q ss_pred hHHHHHHhccCCCCCcchHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhc
Q 005136 502 IESSRRVFDRMPDKNEISWTVMV---RGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSM 578 (712)
Q Consensus 502 ~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 578 (712)
++.|.+.+++....|...-.+|. -.+...|+.++|+..|-++..- +..+...+..+...|....+...|++++-+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999999988776554444 3467889999999999887663 3456677778888999999999999999887
Q ss_pred chhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHh-CCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 579 EPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINS-MPF-EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 579 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
. .+-| |+..+..|++.|-+.|+..+|.+..-. .+. .-+..+...+...|....-+++++.+++++.-+.|+-..
T Consensus 585 ~---slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 585 N---SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred c---ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 6 4566 889999999999999999999987544 454 446777787877788888899999999999999999666
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 656 GYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 656 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
.....+.++.+.|++.+|.++++..-.+-
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 66667777889999999999999887654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-12 Score=127.78 Aligned_cols=215 Identities=12% Similarity=0.036 Sum_probs=106.6
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchh-------hHHHHHHHHHh
Q 005136 426 YLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVF-------LGTALTDTYAK 498 (712)
Q Consensus 426 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~ 498 (712)
+...|+++.|...++++.+.. +-+...+..+...|.+.|+++++..++..+.+.+..++.. .+..++.....
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555443 2234444455555555555555555555555543332111 11122222223
Q ss_pred cCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHH
Q 005136 499 SGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYF 575 (712)
Q Consensus 499 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 575 (712)
..+.+...++++.++ +.++.....+...+...|+.++|.+++++..+ ..|+.... ++.+....++.+++++..
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHHHHH
Confidence 333444555555544 23445555566666666666666666666655 23333211 122223345566666666
Q ss_pred HhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 005136 576 NSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWK 648 (712)
Q Consensus 576 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 648 (712)
+...++ .| |+..+..++..+.+.|+|++|.+.|++. ...|+...+..+...+.+.|+.++|.+.+++.+.
T Consensus 318 e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 318 RQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555522 44 4445555566666666666666665555 4455555555555555555555555555555544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.7e-12 Score=127.12 Aligned_cols=122 Identities=11% Similarity=0.035 Sum_probs=63.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHH---H--
Q 005136 423 ISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTY---A-- 497 (712)
Q Consensus 423 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~-- 497 (712)
...+...|+++.|...++.+.+.. +-+...+..+...+...|+++.+.+++..+.+.+..++......-...+ .
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 344444555555566666666653 2344455566666666666666666666666654332222111111111 1
Q ss_pred --hcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005136 498 --KSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEK 545 (712)
Q Consensus 498 --~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 545 (712)
.....+...+.++..++ .++..+..++..+...|+.++|.+++++..+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 11223333444444442 3555666666666777777777777776666
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.9e-11 Score=114.00 Aligned_cols=276 Identities=13% Similarity=0.071 Sum_probs=137.5
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHH
Q 005136 348 EKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYL 427 (712)
Q Consensus 348 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 427 (712)
..++.+...-.+-+...+++.+..++++.+.+.+|+....+..-|.++...|+..+-
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~L----------------------- 297 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKL----------------------- 297 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchH-----------------------
Confidence 445566666677777788888888888888888887777777777777777766665
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHH
Q 005136 428 EHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRR 507 (712)
Q Consensus 428 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 507 (712)
..+=.++.+. .+-...+|-++..-|...|+.++|+.++.+..... +.=...|-.....|.-.|.-++|..
T Consensus 298 --------f~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAma 367 (611)
T KOG1173|consen 298 --------FLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMA 367 (611)
T ss_pred --------HHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHH
Confidence 3343444433 12233344444433333344444444444433221 1112234444455555555555555
Q ss_pred HhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHhcchh--
Q 005136 508 VFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNEL-TILSVLFACSHSGLVDKGLKYFNSMEPI-- 581 (712)
Q Consensus 508 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 581 (712)
.+....+ .....+--+..-|.+.++.+.|.+.|.+... +.|+.+ .++-+.-.....+.+.+|..+|+.....
T Consensus 368 aY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik 445 (611)
T KOG1173|consen 368 AYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIK 445 (611)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhh
Confidence 4443321 1111111223344555555555555555544 444332 2333333334445555555555544310
Q ss_pred --cCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCch
Q 005136 582 --YNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM--PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAG 656 (712)
Q Consensus 582 --~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 656 (712)
..-.+ ..++++.|+.+|.+.+++++|+..+++. ....+..++.++...|...|+++.|+..+.+++.+.|++..+
T Consensus 446 ~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 446 SVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred hccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence 00011 3344555555555555555555555554 122334445555555555555555555555555555554433
Q ss_pred HH
Q 005136 657 YV 658 (712)
Q Consensus 657 ~~ 658 (712)
-.
T Consensus 526 ~~ 527 (611)
T KOG1173|consen 526 SE 527 (611)
T ss_pred HH
Confidence 33
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.9e-12 Score=126.22 Aligned_cols=281 Identities=11% Similarity=0.069 Sum_probs=175.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHH--HHHHHHHHhcCChHHHH
Q 005136 294 SGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFIS--NALIDLYSKCGETKDGR 371 (712)
Q Consensus 294 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~ 371 (712)
.|++++|.+.+.......-.| ...|.....+..+.|+++.+.+.+..+.+.. |+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666666655543321111 1223233333356667777777776666542 333222 23355677777777777
Q ss_pred HHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 005136 372 LVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNK 451 (712)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~ 451 (712)
..++++.+..|.++.....+...|.+.|++++| ..++..+.+.+..++.
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a-------------------------------~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL-------------------------------LDILPSMAKAHVGDEE 222 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH-------------------------------HHHHHHHHHcCCCCHH
Confidence 777777777766666666666666666666666 6666666555433221
Q ss_pred -------HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHH
Q 005136 452 -------STFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMV 524 (712)
Q Consensus 452 -------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 524 (712)
..|..++.......+.+...++++.+-+. .+.++.....+...+...|+.++|..++++..+.....--.++
T Consensus 223 ~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l 301 (398)
T PRK10747 223 HRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLL 301 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHH
Confidence 12222233223333444444555444322 2456677777788888888888888888776643322222334
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCC
Q 005136 525 RGLAESGYAKESINLFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGR 603 (712)
Q Consensus 525 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 603 (712)
.+....++.+++++..++..+ ..|+. ..+..+...|.+.+++++|.+.|+.+. ...|+...+..++.++.+.|+
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al---~~~P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL---KQRPDAYDYAWLADALDRLHK 376 (398)
T ss_pred HhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHcCC
Confidence 444566888888888888887 35654 456677888888899999999998887 447888888888888889999
Q ss_pred hHHHHHHHHhC
Q 005136 604 LSEAEDFINSM 614 (712)
Q Consensus 604 ~~~A~~~~~~~ 614 (712)
.++|.+++++.
T Consensus 377 ~~~A~~~~~~~ 387 (398)
T PRK10747 377 PEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHH
Confidence 99988888764
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-08 Score=100.55 Aligned_cols=141 Identities=12% Similarity=0.168 Sum_probs=84.0
Q ss_pred chHHHHHHHHHHHHcCCCCchhh--HHHHHHHHHhcCChHHHHHHhccCCCC-----CcchHHHHHHHHHHcCChHHHHH
Q 005136 466 SLEKGKDLHGKIIKLGFPYDVFL--GTALTDTYAKSGDIESSRRVFDRMPDK-----NEISWTVMVRGLAESGYAKESIN 538 (712)
Q Consensus 466 ~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~ 538 (712)
+++.|..+|++..+ +.+|...- |-.....-.+.|-...|+.++++.... -...||..|.--...=.+.....
T Consensus 565 klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~ 643 (835)
T KOG2047|consen 565 KLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTRE 643 (835)
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHH
Confidence 55666666666666 44433221 111111222346667777777776532 22357776665555445666778
Q ss_pred HHHHHHHcCCCCCHHHHHH---HHHHhcccCcHHHHHHHHHhcchhcCCCC--chHHHHHHHHHhhhcCChHHHHHHH
Q 005136 539 LFEEMEKTSITPNELTILS---VLFACSHSGLVDKGLKYFNSMEPIYNIKP--NGRHYTCVVDMLSRSGRLSEAEDFI 611 (712)
Q Consensus 539 ~~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 611 (712)
+|++.++ .-|+...-.. ....=.+.|..+.|..++....+ -++| +...|...-..-++.|+-+-..+++
T Consensus 644 iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq--~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 644 IYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ--ICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh--cCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8888888 4666644332 23344578999999999877652 3345 6777888777778888854444444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-12 Score=127.89 Aligned_cols=247 Identities=11% Similarity=0.095 Sum_probs=193.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC--CCCchhhHHHHHHHHHhcCChHHHHHH
Q 005136 431 QFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLG--FPYDVFLGTALTDTYAKSGDIESSRRV 508 (712)
Q Consensus 431 ~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 508 (712)
+..+|+..|..+... +.-.......+..+|...+++++++.+|+.+.+.. .--+..+|.+.+.-+-+.-....--+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 456778888884443 33334566677778888888888888888887642 123556666666544332222222222
Q ss_pred hccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-
Q 005136 509 FDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP- 586 (712)
Q Consensus 509 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p- 586 (712)
+-...+..+.+|-++.+.|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+... ++.|
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~r 487 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDPR 487 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCch
Confidence 2233345788999999999999999999999999999 778 56788888888888999999999999988 5555
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHH-HHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWA-SLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+-..|.-++-.|.+.++++.|.-.|+++ .+.|....+. .+...+.+.|+.++|.++++++..++|.|+-.-+.-+.++
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 4456667889999999999999999998 7788755544 4445588999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhC
Q 005136 665 ASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 665 ~~~g~~~eA~~~~~~~~~~ 683 (712)
...++++||+..++++++.
T Consensus 568 ~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKEL 586 (638)
T ss_pred HhhcchHHHHHHHHHHHHh
Confidence 9999999999999999874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.9e-11 Score=109.04 Aligned_cols=290 Identities=12% Similarity=0.112 Sum_probs=208.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 005136 294 SGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLV 373 (712)
Q Consensus 294 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 373 (712)
.|++.+|.++..+-.+.+-.| ...|.....+....|+.+.+-.++.++.+..-.++..+.-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888888776655333 3456666667777888888888888887765556677777777888888888888888
Q ss_pred HHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 005136 374 FDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKST 453 (712)
Q Consensus 374 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~ 453 (712)
.+++.+..+.++.......++|.+.|++... ..++..+.+.|.-.++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~l-------------------------------l~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQAL-------------------------------LAILPKLRKAGLLSDEEA 224 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHH-------------------------------HHHHHHHHHccCCChHHH
Confidence 8888777766666677777777666666666 888888887775544321
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHc
Q 005136 454 FSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAES 530 (712)
Q Consensus 454 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 530 (712)
-.. ...++..+++-....+..+.-...++..+ +.++..-.+++.-+.+.
T Consensus 225 ~~l----------------------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 225 ARL----------------------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHH----------------------------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHc
Confidence 110 11123333333334444445555666665 34666777788888899
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHH
Q 005136 531 GYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDF 610 (712)
Q Consensus 531 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 610 (712)
|+.++|.++.++..+.+..|+ ....-.+.+-++...-++..+......+- ++..+.+|+..|.+.+.|.+|.+.
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEA 350 (400)
T ss_pred CChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999888777776 22233466777887777777777644233 457888999999999999999999
Q ss_pred HHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 005136 611 INSM-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 611 ~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 649 (712)
|+.. +..|+..++..+..++.+.|+.++|.+..++++-+
T Consensus 351 leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 351 LEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9976 77899999999999999999999999999988743
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.7e-10 Score=100.35 Aligned_cols=448 Identities=13% Similarity=0.101 Sum_probs=219.1
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHH
Q 005136 159 FVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLA 238 (712)
Q Consensus 159 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 238 (712)
+..+.++..|+.+++--...+-.-...+-..+..++.+.|++++|...+..+.+.. .++....-.|..++.-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 44456666666666554432222122233334455566777777777777666543 44455555555555666777777
Q ss_pred HHHHhhcCCCCcchH-HHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 005136 239 RSVFDRMEKRDVVSW-TVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTS 317 (712)
Q Consensus 239 ~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 317 (712)
..+-.+..+ .... ..+.....+.++-++-..+-+.+.... .---+|.......-.+++|+++|+..... .|+-.
T Consensus 111 ~~~~~ka~k--~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~ 185 (557)
T KOG3785|consen 111 KSIAEKAPK--TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYI 185 (557)
T ss_pred HHHHhhCCC--ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhhh
Confidence 776654432 2222 233333445555554444444443211 22233444444455678888888887662 35555
Q ss_pred HHHHHHHHH-hccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHh
Q 005136 318 CFSIVLSAL-ASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYG 396 (712)
Q Consensus 318 ~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 396 (712)
..+..+..| .+..-++-+.+++.-.++.- +.++...|..+....+.=+-..|+.-.+.+.+... ..| ..+.-++
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~---~~~-~f~~~l~ 260 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNID---QEY-PFIEYLC 260 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc---ccc-hhHHHHH
Confidence 555544443 45566666666666665542 22333333333333322222222222233222220 001 0111111
Q ss_pred cc-----CChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHH
Q 005136 397 LN-----GQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGK 471 (712)
Q Consensus 397 ~~-----~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 471 (712)
+. ..-+.|++++-.+.+.=+..--.|+-.|.+.+++.+|..+.+++.- ..|-......+.. +
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~--a--------- 327 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF--A--------- 327 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH--H---------
Confidence 11 1223443333333322222223333334444444444444443311 1111111111111 0
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC-----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005136 472 DLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD-----KNEISWTVMVRGLAESGYAKESINLFEEMEKT 546 (712)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 546 (712)
.+..-........-|.+.|+-.-. .......++...+.-..++++++..+.....-
T Consensus 328 -------------------alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY 388 (557)
T KOG3785|consen 328 -------------------ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY 388 (557)
T ss_pred -------------------HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111223444454443322 22334555666666666777777777666653
Q ss_pred CCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHH-HHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 005136 547 SITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHY-TCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWAS 625 (712)
Q Consensus 547 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 625 (712)
+..|...-..+..+.+..|++.+|.++|-.+. ...++ |..+| ..|+++|.++++++-|++++-++.-..+...+..
T Consensus 389 -F~NdD~Fn~N~AQAk~atgny~eaEelf~~is-~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLq 465 (557)
T KOG3785|consen 389 -FTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-GPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQ 465 (557)
T ss_pred -hcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-Chhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHH
Confidence 33333333456677777788888888887776 11222 33344 4567788888888888888877754444444444
Q ss_pred HHH-HHhhcCCHHHHHHHHHHHhccCCC
Q 005136 626 LLS-GCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 626 l~~-~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
++. .|...+.+--|.+.+..+-.++|.
T Consensus 466 lIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 466 LIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 443 377788777777777777666665
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-09 Score=108.32 Aligned_cols=474 Identities=12% Similarity=0.107 Sum_probs=264.7
Q ss_pred HHHHHHhcCCChhHhHHHHhhc--CCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhH-H----------------
Q 005136 61 RLLIMYLGSRKSLEANEIVKDL--NGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVS-W---------------- 121 (712)
Q Consensus 61 ~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~---------------- 121 (712)
+-|+.|.+.|++..|..+...- .-.|......+..++.+..-+++|-++|+++..++... +
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarf 699 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF 699 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh
Confidence 4678888888888776554332 22455555556666666666667777776665543211 0
Q ss_pred ----------HHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 005136 122 ----------TALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSIC 191 (712)
Q Consensus 122 ----------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 191 (712)
..-..-+...|+++.|...|-+. ...-..+.+......|.+|+.+++.+..... -...|..+.
T Consensus 700 afp~evv~lee~wg~hl~~~~q~daainhfiea-----~~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~ia 772 (1636)
T KOG3616|consen 700 AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA-----NCLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIA 772 (1636)
T ss_pred hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh-----hhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHH
Confidence 00111112223333333332221 1122334455667889999999988876532 344677888
Q ss_pred HHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCC--cchHHHHHHHHHhcCCHHHH
Q 005136 192 KACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRD--VVSWTVILDVFIEMGDLGEA 269 (712)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a 269 (712)
..|+..|+++.|.++|-+. ..++..|.+|.+.|+++.|.++-++...|. ...|.+-..-+-+.|++.+|
T Consensus 773 dhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~ea 843 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEA 843 (1636)
T ss_pred HHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhh
Confidence 9999999999999988643 356778899999999999999998887764 34566666777889999999
Q ss_pred HHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCC
Q 005136 270 RRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEK 349 (712)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 349 (712)
++++-.+..|+. .|..|-+.|..++.+++..+-.. ..-..|...+..-+...|++..|..-|-+..+
T Consensus 844 eqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----- 910 (1636)
T KOG3616|consen 844 EQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----- 910 (1636)
T ss_pred hheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh-----
Confidence 999988888864 57788889999988888765422 11224555666677778888888776654432
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhc
Q 005136 350 DVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEH 429 (712)
Q Consensus 350 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 429 (712)
|.+-+++|-.++-+++|.++-+.--..+ .-..++-.+++.---+.|.+++.+.. ....-++..+..
T Consensus 911 ----~kaavnmyk~s~lw~dayriaktegg~n-----~~k~v~flwaksiggdaavkllnk~g-----ll~~~id~a~d~ 976 (1636)
T KOG3616|consen 911 ----FKAAVNMYKASELWEDAYRIAKTEGGAN-----AEKHVAFLWAKSIGGDAAVKLLNKHG-----LLEAAIDFAADN 976 (1636)
T ss_pred ----HHHHHHHhhhhhhHHHHHHHHhcccccc-----HHHHHHHHHHHhhCcHHHHHHHHhhh-----hHHHHhhhhhcc
Confidence 5566777888888888777654322111 11111122222222234433333221 111223334445
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchh----hHHHHHHHHHhcC-ChHH
Q 005136 430 KQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVF----LGTALTDTYAKSG-DIES 504 (712)
Q Consensus 430 ~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g-~~~~ 504 (712)
+-++-|..+-+-..+.. .|.... .+..-+...|+++.|.+.+-+.++.+.- ++. +-...---+.+.| ++++
T Consensus 977 ~afd~afdlari~~k~k-~~~vhl--k~a~~ledegk~edaskhyveaiklnty-nitwcqavpsrfd~e~ir~gnkpe~ 1052 (1636)
T KOG3616|consen 977 CAFDFAFDLARIAAKDK-MGEVHL--KLAMFLEDEGKFEDASKHYVEAIKLNTY-NITWCQAVPSRFDAEFIRAGNKPEE 1052 (1636)
T ss_pred cchhhHHHHHHHhhhcc-Cccchh--HHhhhhhhccchhhhhHhhHHHhhcccc-cchhhhcccchhhHHHHHcCCChHH
Confidence 55555555444333322 122111 1111233455555555555444443200 000 0000000112222 2222
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHhcchhc
Q 005136 505 SRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE--LTILSVLFACSHSGLVDKGLKYFNSMEPIY 582 (712)
Q Consensus 505 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 582 (712)
|. ..+...++|..|.++-+. ..|+. ..+..-.+.....|++.+|..++-+..
T Consensus 1053 av------------------~mfi~dndwa~aervae~-----h~~~~l~dv~tgqar~aiee~d~~kae~fllran--- 1106 (1636)
T KOG3616|consen 1053 AV------------------EMFIHDNDWAAAERVAEA-----HCEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN--- 1106 (1636)
T ss_pred HH------------------HHhhhcccHHHHHHHHHh-----hChhhhHHHHhhhhhccccccchhhhhhheeecC---
Confidence 22 234555566666555443 22332 234444445556677777777765554
Q ss_pred CCCCchHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 583 NIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 583 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
+|+. ..+.|...+.|.+|+++.+..
T Consensus 1107 --kp~i-----~l~yf~e~~lw~dalri~kdy 1131 (1636)
T KOG3616|consen 1107 --KPDI-----ALNYFIEAELWPDALRIAKDY 1131 (1636)
T ss_pred --CCch-----HHHHHHHhccChHHHHHHHhh
Confidence 5653 245566777777777776665
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-08 Score=98.06 Aligned_cols=324 Identities=12% Similarity=0.113 Sum_probs=184.2
Q ss_pred ccCChhhHHHHHHHHHHcCCCC------cHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCc----eeeHHHHHHHHhc
Q 005136 328 SLKALRSGMHVHAHVLKIGIEK------DVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAH----VVSWNSMIGGYGL 397 (712)
Q Consensus 328 ~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 397 (712)
..|+..+....+.++.+. +.| -...|..+.+.|-..|+++.|+.+|++..+-..+. ..+|..-...-.+
T Consensus 359 ~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence 346677777777777764 112 23567888999999999999999999988766442 2355555566667
Q ss_pred cCChhhHHHHhhcCCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHH
Q 005136 398 NGQMEEAKELFDNMPK-RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGK 476 (712)
Q Consensus 398 ~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 476 (712)
..+++.|.++++.... |.... ..+...+.+-+ .. +.-+...+...++.-...|-++....+++.
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~-----~~~yd~~~pvQ-~r---------lhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPE-----LEYYDNSEPVQ-AR---------LHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchh-----hhhhcCCCcHH-HH---------HHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 7778888777766542 21111 11111111100 00 111223344445555556677777888888
Q ss_pred HHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC----CCc-chHHHHHHHHHH---cCChHHHHHHHHHHHHcCC
Q 005136 477 IIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD----KNE-ISWTVMVRGLAE---SGYAKESINLFEEMEKTSI 548 (712)
Q Consensus 477 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~ 548 (712)
+++..+... .+.....-.+....-++++.+++++-.. |++ ..|+..+.-+.+ ....+.|..+|++.++ |.
T Consensus 503 iidLriaTP-qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~C 580 (835)
T KOG2047|consen 503 IIDLRIATP-QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GC 580 (835)
T ss_pred HHHHhcCCH-HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cC
Confidence 877654333 2222233334556668888888887653 333 257776655543 2367888889988888 55
Q ss_pred CCCHHHHHHHH--HHhcccCcHHHHHHHHHhcchhcCCCC--chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHH
Q 005136 549 TPNELTILSVL--FACSHSGLVDKGLKYFNSMEPIYNIKP--NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAW 623 (712)
Q Consensus 549 ~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 623 (712)
+|...-+.-|+ ..=..-|....|..+++++.. ++++ -...|+..+.--...=-...-..++++. ..-|+...-
T Consensus 581 pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r 658 (835)
T KOG2047|consen 581 PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAR 658 (835)
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHH
Confidence 55543222222 222345788888888888762 4444 2344554443221111111223333333 223443322
Q ss_pred ---HHHHHHHhhcCCHHHHHHHHHHHhccC-CC-CCchHHHHHHHHHhcCCch
Q 005136 624 ---ASLLSGCKTYKNEQIAERAVKNLWKLA-EE-HPAGYVLLSNIYASAGRWI 671 (712)
Q Consensus 624 ---~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~ 671 (712)
..+...-.+.|..+.|..++.-.-+.- |. ++.++.+.-.--.+-|+-+
T Consensus 659 ~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 659 EMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 223333456788888888887777763 43 4667777777777777733
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-11 Score=123.62 Aligned_cols=288 Identities=13% Similarity=0.040 Sum_probs=154.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHH
Q 005136 293 QSGYPEEAFRLFRQMTRYSFKPNT-SCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGR 371 (712)
Q Consensus 293 ~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 371 (712)
..|+++.|.+.+.+..+. .|+. ..+.....+....|+.+.+.+.+....+....+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456777777777665442 3432 2233334455566777777777766655432222233334466666777777777
Q ss_pred HHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 005136 372 LVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNK 451 (712)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~ 451 (712)
..++.+.+..|.+..++..+...+...|++++| .+.+..+.+.++.+..
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a-------------------------------~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQAL-------------------------------DDIIDNMAKAGLFDDE 222 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH-------------------------------HHHHHHHHHcCCCCHH
Confidence 777777776665666666666666666666666 7777777766543222
Q ss_pred HHHHHHHHHH---hccCchHHHHHHHHHHHHcC---CCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHH---H
Q 005136 452 STFSSVLCAS---ASVASLEKGKDLHGKIIKLG---FPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWT---V 522 (712)
Q Consensus 452 ~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~ 522 (712)
.....-..+. ...+..+.+.+.+..+.+.. .+.++..+..+...+...|+.++|.+++++..+..+.... .
T Consensus 223 ~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~ 302 (409)
T TIGR00540 223 EFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP 302 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH
Confidence 2111111111 22222233333444444332 1247778888888899999999999998887743222110 0
Q ss_pred HHH--HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhh
Q 005136 523 MVR--GLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSR 600 (712)
Q Consensus 523 l~~--~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 600 (712)
++. .....++.+.+++.+++..+ ..|+.. +.....+++..+.+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~---------------------------------~~~ll~sLg~l~~~ 347 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKP---------------------------------KCCINRALGQLLMK 347 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHH--hCCCCh---------------------------------hHHHHHHHHHHHHH
Confidence 111 11122333444444433333 122221 11444556666666
Q ss_pred cCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 005136 601 SGRLSEAEDFINS--M-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWK 648 (712)
Q Consensus 601 ~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 648 (712)
.|++++|.+.|++ . ...|+...+..+...+.+.|+.++|.+++++++.
T Consensus 348 ~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 348 HGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred cccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666662 2 3455555555555556666666666666666543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-10 Score=112.64 Aligned_cols=491 Identities=14% Similarity=0.128 Sum_probs=289.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHh---cccchHHHHHHHHHHHHhCCCCCccHHHHHHH-----HHHcc
Q 005136 161 QNGFSFEALKLFLKLLESGVKPNEVTFSSICKACA---EINDFRLGLSVFGLIFKAGFEKHVSVCNSLIT-----LSLKM 232 (712)
Q Consensus 161 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-----~~~~~ 232 (712)
..++...++.-+.....++...+..++..+...+. ..++.+.+ .+-.++.....|...++...+. -..+.
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r~ 316 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLRL 316 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 35666777777777666666666666555544332 34445544 3333333333333222222211 11111
Q ss_pred CChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCC---CCceeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005136 233 GEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPE---RNEVSWSVMIARYNQSGYPEEAFRLFRQMTR 309 (712)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 309 (712)
+.+. .|...|..+.-++...|+++.+.+.|++... .....|..+...+...|.-..|+.+++.-..
T Consensus 317 ~~~q-----------nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 317 KKFQ-----------NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred hhhc-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 2221 3445555677777788888888888877664 3445677888888888888888888887654
Q ss_pred CCCCC-CHHHHHHHHHHHh-ccCChhhHHHHHHHHHHc--CC--CCcHHHHHHHHHHHHhc-----------CChHHHHH
Q 005136 310 YSFKP-NTSCFSIVLSALA-SLKALRSGMHVHAHVLKI--GI--EKDVFISNALIDLYSKC-----------GETKDGRL 372 (712)
Q Consensus 310 ~~~~p-~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~ 372 (712)
..-.| +...+...-..|. +.+..++++++...+.+. +. ...+..|..+.-+|... ....++.+
T Consensus 386 ~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslq 465 (799)
T KOG4162|consen 386 KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQ 465 (799)
T ss_pred cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH
Confidence 33224 3334444444444 456777777777776662 11 12334444444444332 12345667
Q ss_pred HHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 005136 373 VFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMP----KRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEI 448 (712)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~ 448 (712)
.+++..+.++.|+.+...+.--|+..++.+.|.+...+.. ..+...|..+.-.+...+++.+|+.+.+.....- .
T Consensus 466 ale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~ 544 (799)
T KOG4162|consen 466 ALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-G 544 (799)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-h
Confidence 7777777777666665556666677777777766665544 2355667777777777777777777777655431 1
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHc-CCCCchhhHHHHHHHHHhcCChHHHHHHhccCC-----CCC-cchHH
Q 005136 449 PNKSTFSSVLCASASVASLEKGKDLHGKIIKL-GFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP-----DKN-EISWT 521 (712)
Q Consensus 449 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~-~~~~~ 521 (712)
-|......-+..-...++.+++......+... .-.+. ....++-....+....+. ..+ ..++.
T Consensus 545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr 614 (799)
T KOG4162|consen 545 DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYG----------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSR 614 (799)
T ss_pred hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhh----------HhhhhhhhhhhhhhcccccCcccccccchhhH
Confidence 12222222222233355666666555554431 00000 001111122222222221 111 11222
Q ss_pred HHHHHHHHcC---ChHHHHHHHHHHHHcCCCC--CH------HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chH
Q 005136 522 VMVRGLAESG---YAKESINLFEEMEKTSITP--NE------LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGR 589 (712)
Q Consensus 522 ~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p--~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~ 589 (712)
.+..-....+ ..+.. +......| +. ..|......+.+.+..++|...+.+.. ++.| ...
T Consensus 615 ~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~ 685 (799)
T KOG4162|consen 615 YLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSAS 685 (799)
T ss_pred HHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHH
Confidence 2222111111 11111 11111222 21 234455667788899999998888876 4456 777
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHH--HHHHHhccCCCCCchHHHHHHHHH
Q 005136 590 HYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAER--AVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
.|...+..+...|++++|.+.|... ...|+ .....++...+.+.|+...|+. ++..+++++|.++++|+.||.++.
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFK 765 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 8888899999999999999998876 66776 5667788888999999888888 999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhCC
Q 005136 666 SAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 666 ~~g~~~eA~~~~~~~~~~~ 684 (712)
+.|+.++|.+.|+...+-.
T Consensus 766 ~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 766 KLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HccchHHHHHHHHHHHhhc
Confidence 9999999999999887643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.8e-11 Score=111.83 Aligned_cols=215 Identities=13% Similarity=0.181 Sum_probs=117.6
Q ss_pred HHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC---CCcccHHHHHHHHHhcCChhHHHH
Q 005136 361 YSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK---RNDVSWSAIISGYLEHKQFDLVFA 437 (712)
Q Consensus 361 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 437 (712)
+.-.|+.-.|..-|+.....++.+...|..+...|....+.++.+..|....+ .++.+|..-...+.-.+++++|..
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 44467777777777777777765555577777777777777777666665542 245566666666666666666677
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCc
Q 005136 438 VFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNE 517 (712)
Q Consensus 438 ~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 517 (712)
=|++.+... +.+...|..+..+..+.+.++++...|++.++. ++..+
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~------------------------------- 462 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCP------------------------------- 462 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCc-------------------------------
Confidence 777666532 122333433333333444444444444443332 23333
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-------HHHHH--HHHHHhcccCcHHHHHHHHHhcchhcCCCC-c
Q 005136 518 ISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-------ELTIL--SVLFACSHSGLVDKGLKYFNSMEPIYNIKP-N 587 (712)
Q Consensus 518 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-------~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~ 587 (712)
..|+.....+...++++.|++.|+..++ +.|. ...+. .++-.- =.+++..|++++.+.. .++| .
T Consensus 463 Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~---e~Dpkc 536 (606)
T KOG0547|consen 463 EVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAI---ELDPKC 536 (606)
T ss_pred hHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHH---ccCchH
Confidence 3444445555555555555555555544 2222 11110 111111 1256666666666665 4455 4
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
...+..|+...++.|+.++|+++|++.
T Consensus 537 e~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 537 EQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455666666666667777777666664
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.9e-14 Score=134.10 Aligned_cols=250 Identities=16% Similarity=0.242 Sum_probs=86.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhH-HHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCC
Q 005136 156 ICGFVQNGFSFEALKLFLKLLESGVKPNEVTF-SSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGE 234 (712)
Q Consensus 156 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 234 (712)
...+.+.|++++|++++++......+|+...| ..+...+...++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 44455555666666655443332212222222 22333444455566666666655554422 44445555544 45555
Q ss_pred hHHHHHHHhhcCC--CCcchHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCceeHHHHHHHHHhcCChhHHHHHHHHH
Q 005136 235 VDLARSVFDRMEK--RDVVSWTVILDVFIEMGDLGEARRIFDEMP-----ERNEVSWSVMIARYNQSGYPEEAFRLFRQM 307 (712)
Q Consensus 235 ~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 307 (712)
+++|.+++++.-+ ++...+..++..+...++++++..+++.+. ..+...|..+...+.+.|+.++|++.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666555554322 333344444444555555555555554432 235556666677777777777777777777
Q ss_pred HhCCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCcee
Q 005136 308 TRYSFKPN-TSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVV 386 (712)
Q Consensus 308 ~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 386 (712)
.+ ..|+ ......++..+...|+.+++.+++....+.. +.++..+..+..+|...|+.++|...|++.....+.|+.
T Consensus 173 l~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 66 3453 5556667777777777777777776666653 445566667777777777777777777777776766777
Q ss_pred eHHHHHHHHhccCChhhHHHHhhc
Q 005136 387 SWNSMIGGYGLNGQMEEAKELFDN 410 (712)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~ 410 (712)
....+..++...|+.++|.++..+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccc
Confidence 777777777777777777555543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.9e-10 Score=108.96 Aligned_cols=266 Identities=14% Similarity=0.164 Sum_probs=138.4
Q ss_pred HHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhH
Q 005136 325 ALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEA 404 (712)
Q Consensus 325 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 404 (712)
-|....++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+..|....+|-++.--|...|...+|
T Consensus 253 ~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seA 331 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEA 331 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHH
Confidence 3334444555555554444431 223333333333444555555444444555555544455555555555555555555
Q ss_pred HHHhhcCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 005136 405 KELFDNMPKRN---DVSWSAIISGYLEHKQFDLVFAVFNEMLLS--GE-IPNKSTFSSVLCASASVASLEKGKDLHGKII 478 (712)
Q Consensus 405 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 478 (712)
.+.|.+...-| ...|-.++..|.-.|..+.|+..|....+. |. .|. .| +.--|.+.++...|.++|.+..
T Consensus 332 Rry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--LY--lgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 332 RRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--LY--LGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--HH--HHHHHHHhccHHHHHHHHHHHH
Confidence 55554433222 224555555555555555556666655432 11 121 11 1222444455555555554444
Q ss_pred HcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHc----C--CCCCH
Q 005136 479 KLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKT----S--ITPNE 552 (712)
Q Consensus 479 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~--~~p~~ 552 (712)
... |. |+...+-+.......+.+.+|..+|+..... + ...-.
T Consensus 408 ai~-P~-------------------------------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 408 AIA-PS-------------------------------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred hcC-CC-------------------------------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchh
Confidence 331 33 3344444444444444555555555444311 0 11133
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLLSGC 630 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 630 (712)
.+++.|..+|.+.+.+++|+..++... ...| +..++..++-+|...|+++.|.+.|.+. .+.|+..+...++..+
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL---~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKAL---LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHH---HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 456777777777788888888877776 2345 7777888888888888888888888776 6677776666666543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.1e-11 Score=105.80 Aligned_cols=311 Identities=11% Similarity=0.133 Sum_probs=181.7
Q ss_pred hcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcc-------cHHHHHHHHHhcCChhHH
Q 005136 363 KCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDV-------SWSAIISGYLEHKQFDLV 435 (712)
Q Consensus 363 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a 435 (712)
-+++.++|.+.|-+|.+.++.+..+.-+|.+.|-+.|..+.|+++-+.+.+.... ....|..-|...|-+|.|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3577888888888888877767777777888888888888888877777643222 344456667777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCC
Q 005136 436 FAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDK 515 (712)
Q Consensus 436 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 515 (712)
..+|..+.+.| .--......++..|-...++++|.+.-.++.+.+-.+... .+..
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIAq--------------------- 181 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIAQ--------------------- 181 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHHH---------------------
Confidence 88777776654 2223445555666666666666666655555543222110 0011
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC--chHHHH
Q 005136 516 NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNEL-TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP--NGRHYT 592 (712)
Q Consensus 516 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~ 592 (712)
.|.-+...+....+.+.|...+++..+. .|+.+ .-..+.......|+++.|++.++.+.+. +| -..+..
T Consensus 182 ---fyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~ 253 (389)
T COG2956 182 ---FYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLE 253 (389)
T ss_pred ---HHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHH
Confidence 1233444445555666666666666653 34332 2233445566667777777777766633 33 244556
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH--hcCC
Q 005136 593 CVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA--SAGR 669 (712)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~ 669 (712)
.|..+|...|+.++...++.++ ...+.......+...-....-.+.|...+.+-+...|.-..++..+..-+. ..|.
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccc
Confidence 6667777777777777776665 334444443334333333444556666666666666663333333332222 3356
Q ss_pred chhHHHHHHHHHhCCCccCCccc--EEEECCEEEEEecC
Q 005136 670 WIDAMNVRKLMTEKGLRKSGGCS--WVEVRNQVHFFFQK 706 (712)
Q Consensus 670 ~~eA~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 706 (712)
+.+.+..++.|....+...|.+. .+.+....+-|=++
T Consensus 334 ~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~CP 372 (389)
T COG2956 334 AKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWHCP 372 (389)
T ss_pred hhhhHHHHHHHHHHHHhhcCCceecccCCcceeeeeeCC
Confidence 77888888888887666665443 45555555555443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-09 Score=109.78 Aligned_cols=375 Identities=12% Similarity=0.055 Sum_probs=229.2
Q ss_pred CceeHHHHHHHHHh----c----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcH
Q 005136 280 NEVSWSVMIARYNQ----S----GYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDV 351 (712)
Q Consensus 280 ~~~~~~~l~~~~~~----~----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 351 (712)
++.+|..++..|.+ . .+...|+..++..++ ...+...+-..+......|++.-+...+-...... +...
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~ 850 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCH 850 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccch
Confidence 34566666655544 1 223467777777765 34455555555555566677877777665554432 3456
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCC-----C---CCcccHHHHH
Q 005136 352 FISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMP-----K---RNDVSWSAII 423 (712)
Q Consensus 352 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~---~~~~~~~~l~ 423 (712)
.+|..+.-.+.+..+++.|...|......+|.+...|-.........|+.-++..+|..-. + ++..-|....
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~t 930 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCAT 930 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHH
Confidence 7788888888999999999999999999998888888887777777888888877776522 1 2333344444
Q ss_pred HHHHhcCChhHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc-----CCCCchhhH
Q 005136 424 SGYLEHKQFDLVFAVFNEMLL---------SGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKL-----GFPYDVFLG 489 (712)
Q Consensus 424 ~~~~~~~~~~~a~~~~~~~~~---------~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~ 489 (712)
......|+.++-+...+++.. .|.+-+...|........+.+.+..+.+...+++.. ....+...-
T Consensus 931 e~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak 1010 (1238)
T KOG1127|consen 931 EIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAK 1010 (1238)
T ss_pred HHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 455666666554444333321 134445567777777777777777777766665421 111122233
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHhcc
Q 005136 490 TALTDTYAKSGDIESSRRVFDRMPD-KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE----LTILSVLFACSH 564 (712)
Q Consensus 490 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~ 564 (712)
....+.++..|.++.|..-+..... -+..+...-+ +..-.|+++++.+.|+++.. +..+. .....++-+...
T Consensus 1011 ~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l-~lFfkndf~~sl~~fe~aLs--is~se~d~vvLl~kva~~~g~ 1087 (1238)
T KOG1127|consen 1011 PDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDL-TLFFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVAVCMGL 1087 (1238)
T ss_pred hhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHHHHHhh
Confidence 3455566777888877766655442 1222211111 12446889999999999887 33322 234444555556
Q ss_pred cCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC---C----C-CCCHHHHHHHHHHHhhcCCH
Q 005136 565 SGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM---P----F-EPDSNAWASLLSGCKTYKNE 636 (712)
Q Consensus 565 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~----~-~p~~~~~~~l~~~~~~~g~~ 636 (712)
.+.-+.|...+-+.... -.|+..+...|...+.-..+-......++++ . + .|...+ .. ..+...|+-
T Consensus 1088 ~~~k~~A~~lLfe~~~l--s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll-~e--~i~~~~~r~ 1162 (1238)
T KOG1127|consen 1088 ARQKNDAQFLLFEVKSL--SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLL-KE--LIYALQGRS 1162 (1238)
T ss_pred cccchHHHHHHHHHHHh--CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHH-HH--HHHHHhhhh
Confidence 67777787766665522 2446666666655554433333333333332 1 1 111111 11 125678999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 637 QIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 637 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
......+++..-.+|.+|..+..|-.-|.
T Consensus 1163 ~~vk~~~qr~~h~~P~~~~~WslL~vrya 1191 (1238)
T KOG1127|consen 1163 VAVKKQIQRAVHSNPGDPALWSLLSVRYA 1191 (1238)
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 99999999999999999999988875454
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-09 Score=104.37 Aligned_cols=452 Identities=10% Similarity=0.091 Sum_probs=243.6
Q ss_pred HHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHH--HhcCCHHH
Q 005136 191 CKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVF--IEMGDLGE 268 (712)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~ 268 (712)
++.+...|++++|.+..+.++..+ +.+...+..-+-++.+.+.+++|..+.+.-........-.+=.+| .+.+..++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 344556666777777777766665 445555555556666777777777555533321111111123333 36777888
Q ss_pred HHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHcCC
Q 005136 269 ARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPN-TSCFSIVLSALASLKALRSGMHVHAHVLKIGI 347 (712)
Q Consensus 269 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 347 (712)
|...++.....+..+...-...+.+.|++++|+++|+.+.+++.+-- ...-..++.+-.. ... ..+.....
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~~~q~v~~ 169 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-QLLQSVPE 169 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-HHHHhccC
Confidence 88877755544544555566778888889999999988877654321 1111222211110 000 01122222
Q ss_pred CCc--HHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHH
Q 005136 348 EKD--VFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISG 425 (712)
Q Consensus 348 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 425 (712)
.|+ -..+......+...|++.+|++++......+.. .+. .++.. -.++-.++ ...-..+...
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e----------~l~-~~d~~-eEeie~el----~~IrvQlayV 233 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICRE----------KLE-DEDTN-EEEIEEEL----NPIRVQLAYV 233 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----------hhc-ccccc-hhhHHHHH----HHHHHHHHHH
Confidence 221 122222344566778888888888776322200 000 00000 00000000 0011223344
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH---HHHHhccCchHH--HH------------HHHHHHHHcCCCCchhh
Q 005136 426 YLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSV---LCASASVASLEK--GK------------DLHGKIIKLGFPYDVFL 488 (712)
Q Consensus 426 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l---l~~~~~~~~~~~--a~------------~~~~~~~~~~~~~~~~~ 488 (712)
+-..|+..+|.++|...+... ++|....... +-+.....++.. +. .....+... ....+..
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~i~~ 311 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQAIYR 311 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHH
Confidence 555666666677777777664 3333222211 112222222111 11 111111110 0111122
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCC-cchHHHHHHHHH--HcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhc
Q 005136 489 GTALTDTYAKSGDIESSRRVFDRMPDKN-EISWTVMVRGLA--ESGYAKESINLFEEMEKTSITPNE--LTILSVLFACS 563 (712)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~ 563 (712)
-+.++.+| .+..+.+.++-...+... ...+..++.... +......+.+++....+. .|.. ......+....
T Consensus 312 N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 312 NNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHH
Confidence 23344443 355667777777776443 233444444332 333577888888877764 3443 44555666678
Q ss_pred ccCcHHHHHHHHH--------hcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC--------CCCCC-HHHHHHH
Q 005136 564 HSGLVDKGLKYFN--------SMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM--------PFEPD-SNAWASL 626 (712)
Q Consensus 564 ~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l 626 (712)
..|+++.|.+++. .+. .+.-.+.+...+...+.+.++.+-|..++.+. ...+. ..++..+
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 8999999999998 443 22334566777788888877766666666554 11222 3334444
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHH
Q 005136 627 LSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVR 677 (712)
Q Consensus 627 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~ 677 (712)
+..-.+.|+.++|...++++++.+|++..++..|+.+|.+.. .+.|..+-
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~ 514 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLS 514 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHh
Confidence 555567899999999999999999999999999999999885 56776653
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-08 Score=101.27 Aligned_cols=342 Identities=11% Similarity=0.081 Sum_probs=183.6
Q ss_pred CCceeHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHH
Q 005136 279 RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYS--FKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNA 356 (712)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 356 (712)
.|+..-+..+.++...+-+.+-++++++..-.+ +.-+...-+.++-...+ -+...+.+..+.+-... .| .
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~------~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP------D 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch------h
Confidence 355556666777777777777888877775322 11122222333333332 23344444444433221 11 1
Q ss_pred HHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHH
Q 005136 357 LIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVF 436 (712)
Q Consensus 357 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 436 (712)
+...+...+-+++|..+|++..-. ..+.+.++. ..+..+.|.+.-++..+ +..|..+..+-.+.|...+|+
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n----~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMN----VSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhccc----HHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHH
Confidence 333445556667777777665322 122222222 23455555555555443 345777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCC
Q 005136 437 AVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKN 516 (712)
Q Consensus 437 ~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 516 (712)
+-|-+. -|+..|.-++..+.+.|.+++-..++...++....|.+. ..|+-+|++.+++.+-.+++. .|+
T Consensus 1125 eSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN 1193 (1666)
T KOG0985|consen 1125 ESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPN 1193 (1666)
T ss_pred HHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCC
Confidence 666432 456677777777778888887777777777665555443 456667777777776666543 345
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHH
Q 005136 517 EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVD 596 (712)
Q Consensus 517 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 596 (712)
..-.....+-|...|.++.|.-+|.... .|..|...+...|++..|...-++.. +..+|..+..
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAn-------s~ktWK~Vcf 1257 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKAN-------STKTWKEVCF 1257 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhcc-------chhHHHHHHH
Confidence 4445555556666666665555544322 24455555555566665555444332 4455555555
Q ss_pred HhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 005136 597 MLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYAS 666 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 666 (712)
+|...+.+.-|.-. -+.+--...-+..++..|...|-+++.+.+++.++-+..-+...+.-|+.+|.+
T Consensus 1258 aCvd~~EFrlAQiC--GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1258 ACVDKEEFRLAQIC--GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHhchhhhhHHHhc--CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 55554444332211 001112233344455555556666666666665555555555555555554443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-10 Score=102.88 Aligned_cols=265 Identities=11% Similarity=0.081 Sum_probs=173.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcCChHH
Q 005136 293 QSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKD---VFISNALIDLYSKCGETKD 369 (712)
Q Consensus 293 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~ 369 (712)
-++++++|.++|-+|.+. -+-+..+-..+.+.+.+.|..+.|+++.+.+.++.--+. ......|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 357889999999999872 122344556777788888999999999988887621111 2345567788899999999
Q ss_pred HHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcc--------cHHHHHHHHHhcCChhHHHHHHHH
Q 005136 370 GRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDV--------SWSAIISGYLEHKQFDLVFAVFNE 441 (712)
Q Consensus 370 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~ 441 (712)
|+.+|..+.+.+.--..+...|+..|-...+|++|++.-+++.+-+.. .|..+...+....+.+.|..++.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999998866555667788888888899999998887766644333 344455555566777778888777
Q ss_pred HHHCCCCCCH-HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC--CCcc
Q 005136 442 MLLSGEIPNK-STFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD--KNEI 518 (712)
Q Consensus 442 ~~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~ 518 (712)
..+.+ |+. ..-..+-+.....|+++.|.+.++.+.+.+...-+.+...|..+|...|+.++....+..+.+ ++..
T Consensus 206 Alqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 206 ALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 77653 222 222233445666777777777777777766555566666677777777777776666666542 3333
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFAC 562 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 562 (712)
.-..+........-.+.|...+.+-+. -+|+...+..++..-
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhh
Confidence 444444444444445555555444444 356666666666544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-08 Score=103.04 Aligned_cols=442 Identities=15% Similarity=0.111 Sum_probs=255.3
Q ss_pred CChhHHHHHHHHHHccCChHHHHHHhhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HhhHHHHH
Q 005136 116 RNEVSWTALISGFMKHGRVEESMWYFERNPF---QNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPN-EVTFSSIC 191 (712)
Q Consensus 116 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 191 (712)
.+...|..|.-+..++|+++.+.+.|++... .....|+.+...+...|.-..|..++++-....-+|+ ...+....
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 3556666677777777777777777776443 2344677777777777777777777766554432333 23333333
Q ss_pred HHHhc-ccchHHHHHHHHHHHHhC--C--CCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCH
Q 005136 192 KACAE-INDFRLGLSVFGLIFKAG--F--EKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDL 266 (712)
Q Consensus 192 ~~~~~-~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 266 (712)
..|.+ .+..+++..+...+++.. . ...+..|..+.-+|..
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~----------------------------------- 445 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGF----------------------------------- 445 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHh-----------------------------------
Confidence 34432 455555555555444311 0 0111111111111110
Q ss_pred HHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 005136 267 GEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYS-FKPNTSCFSIVLSALASLKALRSGMHVHAHVLKI 345 (712)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 345 (712)
...+.+.. ..+.....++++.+++..+.+ -.|+...| +.--++-.++++.|.+...+..+.
T Consensus 446 --------~A~~a~~~--------seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 446 --------QARQANLK--------SERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALAL 507 (799)
T ss_pred --------HhhcCCCh--------HHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHh
Confidence 00000000 011122456777777776643 33433333 333455567888888888888887
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHH
Q 005136 346 GIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISG 425 (712)
Q Consensus 346 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 425 (712)
+-..+...|..|.-.+...+++.+|+.+.+......+.+......-+..-..-++.++++.....+
T Consensus 508 ~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~-------------- 573 (799)
T KOG4162|consen 508 NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHK-------------- 573 (799)
T ss_pred cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHH--------------
Confidence 667778888888888888888888888887776555333333333333334456666664444333
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH--cCCCCchhhHHHHHHHHHhcC---
Q 005136 426 YLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIK--LGFPYDVFLGTALTDTYAKSG--- 500 (712)
Q Consensus 426 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g--- 500 (712)
+.+|+....- ..+ ++-.........+.- ......+.++..+.......+
T Consensus 574 ----------L~~we~~~~~-----q~~-----------~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 574 ----------LALWEAEYGV-----QQT-----------LDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred ----------HHHHHhhhhH-----hhh-----------hhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 3333311000 000 000000001101000 001112222322222222111
Q ss_pred ChHHHHHHhccCCCCC------cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHH
Q 005136 501 DIESSRRVFDRMPDKN------EISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLK 573 (712)
Q Consensus 501 ~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 573 (712)
..+.....+...+.|+ ...|......+...+..++|...+.+... +.| ....|......+...|...+|.+
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 1111111112222232 22466677788889999999988888776 445 44667777778888999999999
Q ss_pred HHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHH--HHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 005136 574 YFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAED--FINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWK 648 (712)
Q Consensus 574 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 648 (712)
.|.... .+.| ++....+++.++.+.|+..-|.. ++..+ +..|+ ...|..+...+...|+.+.|.+.|..+++
T Consensus 706 af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 706 AFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 998887 5688 68899999999999998777777 77776 66665 88899999999999999999999999999
Q ss_pred cCCCCCc
Q 005136 649 LAEEHPA 655 (712)
Q Consensus 649 ~~p~~~~ 655 (712)
+++.+|.
T Consensus 783 Le~S~PV 789 (799)
T KOG4162|consen 783 LEESNPV 789 (799)
T ss_pred hccCCCc
Confidence 9887763
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-07 Score=96.02 Aligned_cols=496 Identities=13% Similarity=0.156 Sum_probs=283.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhh-----HHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHH
Q 005136 152 WTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVT-----FSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLI 226 (712)
Q Consensus 152 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 226 (712)
+-.+.+.|.++|-...|++.+.++..- +..... =..+ -.+.-.-.++.+.+.+..|+..++.-+..+.-.+.
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DI--KR~vVhth~L~pEwL-v~yFg~lsve~s~eclkaml~~NirqNlQi~VQva 685 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDI--KRVVVHTHLLNPEWL-VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVA 685 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHH--HHHHHHhccCCHHHH-HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 567777778888888887777665421 100000 0011 12222335677777788887777777776666666
Q ss_pred HHHHccCChHHHHHHHhhcCC---------------CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC-------------
Q 005136 227 TLSLKMGEVDLARSVFDRMEK---------------RDVVSWTVILDVFIEMGDLGEARRIFDEMPE------------- 278 (712)
Q Consensus 227 ~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------------- 278 (712)
.-|...=-.+...++|+.... .|+...--.+.+.++.|++.+.+++.++-.-
T Consensus 686 tky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeA 765 (1666)
T KOG0985|consen 686 TKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 765 (1666)
T ss_pred HHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 666665556666667766653 3555556677777788887777777665421
Q ss_pred ------C-----CceeHH-H------------HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH-------------HH
Q 005136 279 ------R-----NEVSWS-V------------MIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCF-------------SI 321 (712)
Q Consensus 279 ------~-----~~~~~~-~------------l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-------------~~ 321 (712)
| |..-|- - .|..|.+.=++.+.-.+.-.+.. +.-+.... ..
T Consensus 766 kL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD--~dC~E~~ik~Li~~v~gq~~~de 843 (1666)
T KOG0985|consen 766 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLD--VDCSEDFIKNLILSVRGQFPVDE 843 (1666)
T ss_pred cccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhc--CCCcHHHHHHHHHHHhccCChHH
Confidence 1 111111 1 12223222222222222222111 11111111 12
Q ss_pred HHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHH---------HHHHhh-hcCCCC-ce-----
Q 005136 322 VLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGR---------LVFDSI-VEKDVA-HV----- 385 (712)
Q Consensus 322 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---------~~~~~~-~~~~~~-~~----- 385 (712)
+..-+-+.+++..-...++.....|.. |..++++|...|..+++-.+-. .+..+. .+++|. ..
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYer 922 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYER 922 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecc
Confidence 333344556666666777777777754 8899999999998876644321 111111 122210 01
Q ss_pred --------------eeHHHHHHHHhccCChhhHHHHhhcC-----------C------CCCcccHHHHHHHHHhcCChhH
Q 005136 386 --------------VSWNSMIGGYGLNGQMEEAKELFDNM-----------P------KRNDVSWSAIISGYLEHKQFDL 434 (712)
Q Consensus 386 --------------~~~~~l~~~~~~~~~~~~a~~~~~~~-----------~------~~~~~~~~~l~~~~~~~~~~~~ 434 (712)
..|....+-+....+.+-=.+++.+- . ..|+...+..+.++...+-+.+
T Consensus 923 GqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~e 1002 (1666)
T KOG0985|consen 923 GQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNE 1002 (1666)
T ss_pred cCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHH
Confidence 11222222233333332222222111 0 1255566777778888888888
Q ss_pred HHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccC
Q 005136 435 VFAVFNEMLLSGE--IPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRM 512 (712)
Q Consensus 435 a~~~~~~~~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 512 (712)
-++++++..-.+- ..+...-+.++- -+-..+..+..++..++-... .|+ +.......+-+++|..+|+..
T Consensus 1003 LIELLEKIvL~~S~Fse~~nLQnLLiL-tAikad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf 1074 (1666)
T KOG0985|consen 1003 LIELLEKIVLDNSVFSENRNLQNLLIL-TAIKADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKF 1074 (1666)
T ss_pred HHHHHHHHhcCCcccccchhhhhhHHH-HHhhcChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHh
Confidence 8888887764321 111122222222 222233444444444443221 111 111222223333444333332
Q ss_pred C-------------------------CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc
Q 005136 513 P-------------------------DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGL 567 (712)
Q Consensus 513 ~-------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 567 (712)
. -..+..|+.+..+-.+.|...+|++-|-+ ..|...|.-++..+.+.|.
T Consensus 1075 ~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1075 DMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGK 1148 (1666)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCc
Confidence 1 02455799999999999999999887753 2455679999999999999
Q ss_pred HHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 005136 568 VDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLW 647 (712)
Q Consensus 568 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 647 (712)
+++-++++...+++ .-.|... ..|+.+|++.++..+-.+++. .|+......+..-|...|.++.|.-+|.-
T Consensus 1149 ~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-- 1219 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN-- 1219 (1666)
T ss_pred HHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--
Confidence 99999999988743 4455443 468889999999888766654 47777788888889999999998888764
Q ss_pred ccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 648 KLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 648 ~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
.+-+..|+..++..|.+..|.+.-++..+
T Consensus 1220 ------vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1220 ------VSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 45677888889999999888887665543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-07 Score=91.45 Aligned_cols=376 Identities=12% Similarity=0.085 Sum_probs=195.7
Q ss_pred ChhHHHHHhhcCcCCCCCCchhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHh
Q 005136 1 MKASLRSLFSINPETSFNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVK 80 (712)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 80 (712)
|+.|+.+++.+ +.... ..-.|..+...|.+.|+++.|.++|.+. + .++--|.+|.+.|+++.|.++-+
T Consensus 748 w~kai~ildni-qdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 748 WKKAISILDNI-QDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhHhHHHHh-hhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccHHHHHHHHH
Confidence 45666777766 33332 2345667777788888888887777432 2 34566778888888888887777
Q ss_pred hcCCCCc--chHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCC-CCcccHHHHHH
Q 005136 81 DLNGFDL--VVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPF-QNVISWTAAIC 157 (712)
Q Consensus 81 ~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~ 157 (712)
+...|.. ..|-+-..-+-++|++.+|.++|-.+.+|+.. |.+|-+.|..++..++.++... .=..+...+..
T Consensus 816 e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~ 890 (1636)
T KOG3616|consen 816 ECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAK 890 (1636)
T ss_pred HhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHH
Confidence 7655543 45555555666778888888887777776644 5677788888888777776432 12234555566
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHH
Q 005136 158 GFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDL 237 (712)
Q Consensus 158 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 237 (712)
-+-..|+...|..-|-+.. -|..-++.|..++.|+.|-++-. ..| ..+.. ..++-..++.---+.
T Consensus 891 e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak---teg-g~n~~--k~v~flwaksiggda 955 (1636)
T KOG3616|consen 891 ELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK---TEG-GANAE--KHVAFLWAKSIGGDA 955 (1636)
T ss_pred HHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh---ccc-cccHH--HHHHHHHHHhhCcHH
Confidence 6666777777766665432 23344455555555555544432 112 11111 112222222222334
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCC-CCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 005136 238 ARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPE-RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNT 316 (712)
Q Consensus 238 a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 316 (712)
|.+++++.- ....-+...+..+.++-|..+-+-..+ +-....-.+...+-..|++++|-+-|-+.++.+
T Consensus 956 avkllnk~g-----ll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln----- 1025 (1636)
T KOG3616|consen 956 AVKLLNKHG-----LLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN----- 1025 (1636)
T ss_pred HHHHHHhhh-----hHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc-----
Confidence 444444221 111112223344555555554433322 222333344444556777777777766665432
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHh
Q 005136 317 SCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYG 396 (712)
Q Consensus 317 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 396 (712)
||++-.... -..+++ .+.++.|.+|... +.++.+.+++..|.++-+.-..... ...+..-.++-.
T Consensus 1026 -tynitwcqa-vpsrfd------~e~ir~gnkpe~a-----v~mfi~dndwa~aervae~h~~~~l--~dv~tgqar~ai 1090 (1636)
T KOG3616|consen 1026 -TYNITWCQA-VPSRFD------AEFIRAGNKPEEA-----VEMFIHDNDWAAAERVAEAHCEDLL--ADVLTGQARGAI 1090 (1636)
T ss_pred -cccchhhhc-ccchhh------HHHHHcCCChHHH-----HHHhhhcccHHHHHHHHHhhChhhh--HHHHhhhhhccc
Confidence 111110000 000111 1223334444322 2345666777777666543322222 223344445555
Q ss_pred ccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 005136 397 LNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAV 438 (712)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 438 (712)
..|++.+|..++-+..+|+.. ++.|...+-|..|+++
T Consensus 1091 ee~d~~kae~fllrankp~i~-----l~yf~e~~lw~dalri 1127 (1636)
T KOG3616|consen 1091 EEGDFLKAEGFLLRANKPDIA-----LNYFIEAELWPDALRI 1127 (1636)
T ss_pred cccchhhhhhheeecCCCchH-----HHHHHHhccChHHHHH
Confidence 667777777777666666542 3344444545444444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-08 Score=93.04 Aligned_cols=303 Identities=12% Similarity=0.036 Sum_probs=190.7
Q ss_pred CCCCHHHHHHHHHHHhc--cCChhhHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeH
Q 005136 312 FKPNTSCFSIVLSALAS--LKALRSGMHVHAHVLKI-GIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSW 388 (712)
Q Consensus 312 ~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 388 (712)
++|...+....+.+++. .++...+...+-.+... -++.+......+..++...|+.++|...|++....++.+....
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 44444444444444432 33333444443333332 3455677778888888888888888888888877776555555
Q ss_pred HHHHHHHhccCChhhHHHHhhcCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 005136 389 NSMIGGYGLNGQMEEAKELFDNMPKRN---DVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVA 465 (712)
Q Consensus 389 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~ 465 (712)
....-.+.+.|+.+....+...+-..+ ..-|..-+... ...+
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l-----------------------------------~~~K 314 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL-----------------------------------YDEK 314 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh-----------------------------------hhhh
Confidence 555555566666666644333322111 11122222222 2344
Q ss_pred chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 005136 466 SLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEE 542 (712)
Q Consensus 466 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 542 (712)
+++.|..+-.+.++.+ +-++..+-.-...+...|+.++|.-.|+... .-+..+|..|+..|...|++.+|.-+-..
T Consensus 315 ~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 315 KFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred hHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 5555555555544432 2222333333345566777777777777654 23666788888888888888888777666
Q ss_pred HHHcCCCCCHHHHHHHH-HHh-cccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC
Q 005136 543 MEKTSITPNELTILSVL-FAC-SHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP 618 (712)
Q Consensus 543 ~~~~~~~p~~~~~~~l~-~~~-~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 618 (712)
..+. +..+..++..+. ..| ....--++|.++++... .+.|+ ....+.++..+...|+.++++.++++. ...|
T Consensus 394 ~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~ 469 (564)
T KOG1174|consen 394 TIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP 469 (564)
T ss_pred HHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc
Confidence 5553 344555554442 222 23334578899998876 45774 667788889999999999999999987 6678
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 619 DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 619 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
|....+.+...+...+.+++|...|..++.++|++.
T Consensus 470 D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 470 DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 888888888888889999999999999999999864
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.5e-11 Score=111.49 Aligned_cols=198 Identities=11% Similarity=0.095 Sum_probs=162.5
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005136 485 DVFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFA 561 (712)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 561 (712)
....+..+...+...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355667778888889999999998887653 345567788889999999999999999998853 3345667788888
Q ss_pred hcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHH
Q 005136 562 CSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIA 639 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a 639 (712)
+...|++++|.+.++++............+..++.++...|++++|...+++. ...|+ ...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998743222224567788899999999999999999987 33443 66777888889999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 640 ERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 640 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
...++++.+..|+++..+..++.++...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888999999999999999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.5e-10 Score=103.59 Aligned_cols=276 Identities=10% Similarity=0.065 Sum_probs=155.4
Q ss_pred cCChhhHHHHhhcCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHH
Q 005136 398 NGQMEEAKELFDNMPKR---NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLH 474 (712)
Q Consensus 398 ~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 474 (712)
.|++.+|+++..+-.+. ....|-.-+.+.-+.|+.+.+-.++.+..+.--.++...+..........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 67888887777665432 222344445555666777777777777666433444445555555666667777776666
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCc-----------chHHHHHHHHHHcCChHHHHHHHHHH
Q 005136 475 GKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNE-----------ISWTVMVRGLAESGYAKESINLFEEM 543 (712)
Q Consensus 475 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~ 543 (712)
..+.+.+ +-.+.......++|.+.|++.+...++..+.+... .+|+.+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6666654 33455556666666777777777666666654321 23444555444444444444455544
Q ss_pred HHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHH
Q 005136 544 EKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM--PFEPDSN 621 (712)
Q Consensus 544 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~ 621 (712)
... .+-+...-..++.-+...|+.++|.++.++.. +.+.+|+ ...++. ..+-++...=++..++. ....++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~---L~~~~~-~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPR---LCRLIP-RLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChh---HHHHHh-hcCCCCchHHHHHHHHHHHhCCCChh
Confidence 332 33444445555556666667777766666665 2344443 111111 22334433333333322 1112235
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 005136 622 AWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMT 681 (712)
Q Consensus 622 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 681 (712)
.+.++...|.+++.|.+|...++.+++..|+ ...+..++.++.+.|+.++|.+..++.+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 5566666677777777777777777666665 5566677777777777777777666654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-11 Score=102.01 Aligned_cols=161 Identities=18% Similarity=0.158 Sum_probs=143.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHH
Q 005136 520 WTVMVRGLAESGYAKESINLFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDM 597 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 597 (712)
...|...|...|+...|..-+++.++ ..|+. .++..+...|.+.|+.+.|.+.|++.. .+.| +..+.|..+..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 44577789999999999999999998 56765 678888889999999999999999988 5678 78899999999
Q ss_pred hhhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhH
Q 005136 598 LSRSGRLSEAEDFINSMPFEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDA 673 (712)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA 673 (712)
+|..|++++|...|++.-..|. ..+|.++..+..+.|+.+.|++.++++++++|+++.....++......|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999999854443 778888988889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 005136 674 MNVRKLMTEKGL 685 (712)
Q Consensus 674 ~~~~~~~~~~~~ 685 (712)
..++++....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999887764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-08 Score=92.17 Aligned_cols=442 Identities=12% Similarity=0.083 Sum_probs=254.1
Q ss_pred HHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhc---CCCCcchHHHHHHHHHhcCChH
Q 005136 28 LKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDL---NGFDLVVHNCMINANIQWGNLE 104 (712)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~ 104 (712)
+.-...+.+++.|..+++.....+-+....+..-+..++...|++++|...+..+ ..++...+--|..+.--.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 4556677889999999998886665544444445677888999999999998887 3466778888888888889999
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 005136 105 EAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNE 184 (712)
Q Consensus 105 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 184 (712)
+|..+-.+..+. +---..|.+.--+.|+-++-..+-+.+.. ....-.++.......-.+.+|++++.+....+ |+-
T Consensus 109 eA~~~~~ka~k~-pL~~RLlfhlahklndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey 184 (557)
T KOG3785|consen 109 EAKSIAEKAPKT-PLCIRLLFHLAHKLNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEY 184 (557)
T ss_pred HHHHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhh
Confidence 999888776543 22223344444555665555444443332 12233345555555567888888888877642 333
Q ss_pred hhHHH-HHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHh-
Q 005136 185 VTFSS-ICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIE- 262 (712)
Q Consensus 185 ~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~- 262 (712)
...+. +.-+|.+..-++-+..++..-++. ++.++...|.......+.=.-..|..-.+.+...-...| ..+.-+++
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~-~f~~~l~rH 262 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY-PFIEYLCRH 262 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc-hhHHHHHHc
Confidence 33333 334555666677777777766654 344444555544444433221122222222211111111 11122222
Q ss_pred ----cCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----hccCChh
Q 005136 263 ----MGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSAL-----ASLKALR 333 (712)
Q Consensus 263 ----~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-----~~~~~~~ 333 (712)
..+-+.|.+++-.+.+.-+.+--.|+-.|.+.++.++|..+.+++.. ..|-......+..+. .......
T Consensus 263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 12334555555444443334444556667777777777777666432 333332222222221 2223455
Q ss_pred hHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCC
Q 005136 334 SGMHVHAHVLKIGIEKD-VFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMP 412 (712)
Q Consensus 334 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (712)
.|.+.|+.+-..+.+-| +.-..++...+.-..++++.+..+..+..--..+....-.+.++.+..|.+.+|+++|-.+.
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc
Confidence 66666666655554433 23344555556666677777777777766555444444556777777888888888887777
Q ss_pred CC---CcccHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCchHHHHHHHHHHHHc
Q 005136 413 KR---NDVSWS-AIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSS-VLCASASVASLEKGKDLHGKIIKL 480 (712)
Q Consensus 413 ~~---~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~ 480 (712)
.| |..+|. .|.++|...+.++.|+.++-++-. +.+..+... +..-|.+.+.+--|.+.|+.+...
T Consensus 421 ~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 421 GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 54 344444 456777888888777777655422 223333333 334666777776677777776654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.3e-08 Score=97.32 Aligned_cols=244 Identities=14% Similarity=0.055 Sum_probs=148.0
Q ss_pred hhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhc-------------CCCCcchHHHHHHHH
Q 005136 31 ITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDL-------------NGFDLVVHNCMINAN 97 (712)
Q Consensus 31 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------------~~~~~~~~~~l~~~~ 97 (712)
|..-|+.+.|-.-...+. +..+|..+..++.+..+++-|.-.+..| ..++ ..-..+...-
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 455566665544333222 2335555666666665555555554444 1232 2222222233
Q ss_pred HhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005136 98 IQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQN-VISWTAAICGFVQNGFSFEALKLFLKLL 176 (712)
Q Consensus 98 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 176 (712)
.+.|.+++|+.+|++.++ |..|=..|...|++++|.++-+.-.+-- -.+|.....-+-..++.+.|++.|++..
T Consensus 811 ieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 467889999999987654 3445566778899999988876543321 2356666666666788888888888643
Q ss_pred HcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHH
Q 005136 177 ESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVI 256 (712)
Q Consensus 177 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 256 (712)
- |-...+..|. .++....+..+.+ .|...|.--...+-..|+.+.|+.++.... .|-++
T Consensus 886 ~----hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~ 944 (1416)
T KOG3617|consen 886 V----HAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSM 944 (1416)
T ss_pred C----hHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhh
Confidence 1 1111111111 1223333333332 233445555555556788999988888543 46677
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005136 257 LDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTR 309 (712)
Q Consensus 257 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 309 (712)
++..|-.|+.++|..+-++- .|..++-.+.+.|-..|++.+|...|.+...
T Consensus 945 VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred eeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 77888888888888887664 3556677788899999999999999887653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-08 Score=93.08 Aligned_cols=265 Identities=10% Similarity=0.022 Sum_probs=194.9
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHH
Q 005136 414 RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKS-TFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTAL 492 (712)
Q Consensus 414 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 492 (712)
.|+.....+...+...|+.++|...|+..... .|... ......-.+.+.|+++....+...+.... ..+...+..-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 46777788888888888888888888887653 23322 22222333467788888877777766532 1122222222
Q ss_pred HHHHHhcCChHHHHHHhccCCCCCcc---hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcH
Q 005136 493 TDTYAKSGDIESSRRVFDRMPDKNEI---SWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLV 568 (712)
Q Consensus 493 ~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 568 (712)
........+++.|..+-++..+.++. .+-.-...+...|++++|.-.|+..+. +.| +...|..|+.+|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 23344567888999888887755444 444444678899999999999999988 676 568999999999999999
Q ss_pred HHHHHHHHhcchhcCCCCchHHHHHHH-HHhh-hcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHH
Q 005136 569 DKGLKYFNSMEPIYNIKPNGRHYTCVV-DMLS-RSGRLSEAEDFINSM-PFEPDS-NAWASLLSGCKTYKNEQIAERAVK 644 (712)
Q Consensus 569 ~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~ 644 (712)
.+|.-.-....+. +..+..+...++ ..+. ...--++|.+++++. .++|+. .....+...|...|..+.++.+++
T Consensus 385 kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 9998877766522 233666776664 3333 334468899999987 788884 445666777999999999999999
Q ss_pred HHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 645 NLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 645 ~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
+.+...|+ ...+..|+.++...+.+.+|++.|...++.++.
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 99999998 679999999999999999999999998876654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-07 Score=92.09 Aligned_cols=454 Identities=12% Similarity=0.084 Sum_probs=223.2
Q ss_pred HHHHHhcCCChhHhHHHHhhcC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHH--HccCChHH
Q 005136 62 LLIMYLGSRKSLEANEIVKDLN---GFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGF--MKHGRVEE 136 (712)
Q Consensus 62 l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~ 136 (712)
=+..+..+|++++|.+...++. +.+..++.+-+.++.+.+.+++|+.+.+.-..........+=.+| .+.++.++
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 3556678888888888877772 345678888888899999999998666543321111111123344 47888888
Q ss_pred HHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhcccchHHHHHHHHHHHHhCC
Q 005136 137 SMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNE-VTFSSICKACAEINDFRLGLSVFGLIFKAGF 215 (712)
Q Consensus 137 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 215 (712)
|...++...+.+..+...-.+.+.+.|++++|+++|+.+.+.+..--. ..-..++.+-.. .. .+.+.....
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~-~~~~q~v~~ 169 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQ-VQLLQSVPE 169 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hh-HHHHHhccC
Confidence 888888666666666677777888888888898888888776543111 111111111100 00 111111111
Q ss_pred CCCccHHHHH---HHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhh-CCCCC---------c-
Q 005136 216 EKHVSVCNSL---ITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDE-MPERN---------E- 281 (712)
Q Consensus 216 ~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~---------~- 281 (712)
.| ..+|..+ ...++..|++..|+++++...+ +-.+ +...| .
T Consensus 170 v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~------------------------~~~e~l~~~d~~eEeie~el~ 224 (652)
T KOG2376|consen 170 VP-EDSYELLYNTACILIENGKYNQAIELLEKALR------------------------ICREKLEDEDTNEEEIEEELN 224 (652)
T ss_pred CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHH------------------------HHHHhhcccccchhhHHHHHH
Confidence 22 2233322 3345566777777777764311 0000 01100 0
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH----HHHHHHHhccCChhh--HHHHHHHHHHcCCCCcHHHHH
Q 005136 282 VSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCF----SIVLSALASLKALRS--GMHVHAHVLKIGIEKDVFISN 355 (712)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~ 355 (712)
..-..|...+...|+.++|..+|...++.. ++|.... |.++ ++....++-. ++..++.....
T Consensus 225 ~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~---------- 292 (652)
T KOG2376|consen 225 PIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFK---------- 292 (652)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHH----------
Confidence 122345566778899999999999888755 3333222 2222 2222222111 11111111100
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCC-cccHHHHHHHH--HhcCCh
Q 005136 356 ALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRN-DVSWSAIISGY--LEHKQF 432 (712)
Q Consensus 356 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~ 432 (712)
.+......+..........-+.++..| .+..+.+.++....+... ...+..++... ++...+
T Consensus 293 -------------l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~ 357 (652)
T KOG2376|consen 293 -------------LAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKH 357 (652)
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHH
Confidence 000000000000000000001111111 122233333333333221 11122222211 111124
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHH--------HHHHcCCCCchhhHHHHHHHHHhcCChHH
Q 005136 433 DLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHG--------KIIKLGFPYDVFLGTALTDTYAKSGDIES 504 (712)
Q Consensus 433 ~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 504 (712)
..+..++....+....-........+......|+++.|.+++. .+.+. ...+.+...++..+.+.++.+.
T Consensus 358 ~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~--~~~P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 358 KKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA--KHLPGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred hhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh--ccChhHHHHHHHHHHhccCCcc
Confidence 4445555444433211112333444455556666666666665 22222 2334445556666666666666
Q ss_pred HHHHhccCCC------CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHH
Q 005136 505 SRRVFDRMPD------KN----EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKY 574 (712)
Q Consensus 505 A~~~~~~~~~------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 574 (712)
|..++....+ .. ..++.-++..-.++|+.++|..+++++.+. .++|..+...++.+|++. |.+.|..+
T Consensus 436 a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 6666555431 11 112333444455778888888888888884 255667777888888776 56777766
Q ss_pred HHhcc
Q 005136 575 FNSME 579 (712)
Q Consensus 575 ~~~~~ 579 (712)
-..+.
T Consensus 514 ~k~L~ 518 (652)
T KOG2376|consen 514 SKKLP 518 (652)
T ss_pred hhcCC
Confidence 65554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-10 Score=103.08 Aligned_cols=227 Identities=11% Similarity=0.036 Sum_probs=167.9
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC--C-CcchHHHHHHHHHH
Q 005136 453 TFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD--K-NEISWTVMVRGLAE 529 (712)
Q Consensus 453 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 529 (712)
.-..+..+|.+.|.+.+|.+.++...+. .|-+.+|-.|.+.|.+..++..|..++.+..+ | |+.....+...+..
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3345555666666666666666655554 34455566666777777777777777776653 2 33334445666777
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHH
Q 005136 530 SGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAE 608 (712)
Q Consensus 530 ~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 608 (712)
.++.++|.++++...+. .| +......+...|.-.++.+-|+.+|+++.+ .|+ .++..|+.++-+|.-.++++-++
T Consensus 303 m~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhH
Confidence 78888888888888774 34 344555566667777888888888888873 243 36788888888888888999888
Q ss_pred HHHHhC---CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 609 DFINSM---PFEPD--SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 609 ~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
.-|++. ...|+ ...|-++.......||+..|.+.++-++..+|++.++++.|+.+-.+.|+.++|+.+++...+.
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 888876 12343 6778888888888999999999999999999999999999999999999999999999988775
Q ss_pred CC
Q 005136 684 GL 685 (712)
Q Consensus 684 ~~ 685 (712)
.+
T Consensus 459 ~P 460 (478)
T KOG1129|consen 459 MP 460 (478)
T ss_pred Cc
Confidence 53
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.1e-08 Score=100.17 Aligned_cols=142 Identities=14% Similarity=0.054 Sum_probs=77.9
Q ss_pred HHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005136 368 KDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMP---KRNDVSWSAIISGYLEHKQFDLVFAVFNEMLL 444 (712)
Q Consensus 368 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 444 (712)
..|...+.+..+....+...|+.|.-. ...|.+.-+.-.|-.-. .....+|..+.-.+.+..+++-|...|...+.
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 456777777776666667777776655 55566666655554433 23556777777778888888888888877765
Q ss_pred CCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH----cCCCCchhhHHHHHHHHHhcCChHHHHHHhcc
Q 005136 445 SGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIK----LGFPYDVFLGTALTDTYAKSGDIESSRRVFDR 511 (712)
Q Consensus 445 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 511 (712)
.. +.+...+..........|+.-+...++..-.. .|--+...-+..........|+.++-+...+.
T Consensus 879 Ld-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~k 948 (1238)
T KOG1127|consen 879 LD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARK 948 (1238)
T ss_pred cC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhh
Confidence 42 22333443333333445555555555554211 22233333333333334445554444443333
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.8e-08 Score=98.66 Aligned_cols=144 Identities=13% Similarity=0.036 Sum_probs=83.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHc----C----------CCCcHH--HHHHHHHHHHh
Q 005136 300 AFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKI----G----------IEKDVF--ISNALIDLYSK 363 (712)
Q Consensus 300 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~ 363 (712)
+...+..+...|+++ +|+.+-..+..........+++...... + -+|+.. ++.-+...|-.
T Consensus 130 ~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 130 LDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 444555556666543 3444444444444444444444444322 0 123332 34556677777
Q ss_pred cCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCC---CcccHHHHHHHHHhcCChhHHHHHHH
Q 005136 364 CGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKR---NDVSWSAIISGYLEHKQFDLVFAVFN 440 (712)
Q Consensus 364 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 440 (712)
.|++++|+.++++..+..|..+..|..-.+.+-+.|++.+|.+.++....- |...=+..+..+.+.|++++|.+++.
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888888888777766777777777888888888876665555432 33344444555556666666666666
Q ss_pred HHHHCC
Q 005136 441 EMLLSG 446 (712)
Q Consensus 441 ~~~~~g 446 (712)
.....+
T Consensus 287 ~Ftr~~ 292 (517)
T PF12569_consen 287 LFTRED 292 (517)
T ss_pred hhcCCC
Confidence 655544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-09 Score=108.71 Aligned_cols=192 Identities=13% Similarity=0.194 Sum_probs=132.2
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC-------C-C---cchHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCC-CCH-
Q 005136 491 ALTDTYAKSGDIESSRRVFDRMPD-------K-N---EISWTVMVRGLAESGYAKESINLFEEMEK-----TSIT-PNE- 552 (712)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~~-------~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~-p~~- 552 (712)
.+...|...+++++|..+|+++.. + + ..+++.|..+|...|++++|...+++..+ .|.. |..
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 345556666666666666655531 1 1 12456666667777777766666665433 1222 222
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcC--CCC----chHHHHHHHHHhhhcCChHHHHHHHHhC---------CCC
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYN--IKP----NGRHYTCVVDMLSRSGRLSEAEDFINSM---------PFE 617 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~ 617 (712)
..++.+...|...+.++.|..+++...+... ..+ -..+++.|+..|...|++++|.++++++ +..
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 2356666778888888888888876653322 122 2457889999999999999999999886 112
Q ss_pred CC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhcc----CCCC---CchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 618 PD-SNAWASLLSGCKTYKNEQIAERAVKNLWKL----AEEH---PAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 618 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+. ...++.+...|.+.++.++|.+++.++... .|++ ...|..|+.+|.+.|++++|.++.+.+..
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22 556778888899999999999999988653 3444 45788999999999999999999988763
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-07 Score=92.31 Aligned_cols=446 Identities=14% Similarity=0.115 Sum_probs=240.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHH
Q 005136 161 QNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARS 240 (712)
Q Consensus 161 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 240 (712)
..+.+...+.+.+...+. .+-...|.....-.+...|+.++|........+.+ .-+...|..+.-.+-...++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 345555666666555552 33334454444445555667777777666665533 3344556666555556667777777
Q ss_pred HHhhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC---CCceeHHHHHHHHHhcCChhHHHHHHHHHHhCC-CC
Q 005136 241 VFDRMEK---RDVVSWTVILDVFIEMGDLGEARRIFDEMPE---RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYS-FK 313 (712)
Q Consensus 241 ~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~ 313 (712)
.|..... .|...|..+.-.-++.|+++.....-....+ .....|..++.++.-.|++..|..++++..+.. -.
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 7776654 3344455444444555555554444444332 344578888888888999999999999887654 35
Q ss_pred CCHHHHHHHHHH------HhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceee
Q 005136 314 PNTSCFSIVLSA------LASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVS 387 (712)
Q Consensus 314 p~~~~~~~ll~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 387 (712)
|+...|...... ....|..+.|.+.+...... +......-..-...+.+.+++++|..++..+..++|.+...
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Y 255 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDY 255 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHH
Confidence 666665544333 34567777777766554332 11122333455677889999999999999999999877777
Q ss_pred HHHHHHHHhccCChhhHH-HHhhcCCCC--CcccHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005136 388 WNSMIGGYGLNGQMEEAK-ELFDNMPKR--NDVSWSAI-ISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASAS 463 (712)
Q Consensus 388 ~~~l~~~~~~~~~~~~a~-~~~~~~~~~--~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 463 (712)
|..+..++.+-.+..+++ .+|....+. ....-..+ +.......-.+..-.++..+.+.|+++-...+.++- -.
T Consensus 256 y~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~ 332 (700)
T KOG1156|consen 256 YEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY---KD 332 (700)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH---hc
Confidence 777777776333333343 555554421 11111111 111111222334456677778888776554444443 22
Q ss_pred cCchHHHHHHHHHHHH----cCC----------CCchhhH--HHHHHHHHhcCChHHHHHHhccCCCCCcch---HHHHH
Q 005136 464 VASLEKGKDLHGKIIK----LGF----------PYDVFLG--TALTDTYAKSGDIESSRRVFDRMPDKNEIS---WTVMV 524 (712)
Q Consensus 464 ~~~~~~a~~~~~~~~~----~~~----------~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~ 524 (712)
....+-.+++...+.. .|. +|+...| ..++..|-+.|+++.|...++......+.. |..-.
T Consensus 333 p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~Ka 412 (700)
T KOG1156|consen 333 PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKA 412 (700)
T ss_pred hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHH
Confidence 2222222222222221 110 2332222 234455556666666666666666443332 33334
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC--chH----HHH--HHHH
Q 005136 525 RGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP--NGR----HYT--CVVD 596 (712)
Q Consensus 525 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~----~~~--~l~~ 596 (712)
+.+...|+.++|..++++..+.. .||...=..-.....+.+..++|.++..... +.|... +.. .|. .=+.
T Consensus 413 RI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFT-r~~~~~~~~L~~mqcmWf~~E~g~ 490 (700)
T KOG1156|consen 413 RIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFT-REGFGAVNNLAEMQCMWFQLEDGE 490 (700)
T ss_pred HHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhh-hcccchhhhHHHhhhHHHhHhhhH
Confidence 55666666666666666666632 2222222244445556666666666666655 223211 111 111 1144
Q ss_pred HhhhcCChHHHHHHHHhC
Q 005136 597 MLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~ 614 (712)
+|.+.|++..|++-|..+
T Consensus 491 ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 491 AYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 556666666666555544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-09 Score=113.10 Aligned_cols=243 Identities=12% Similarity=0.070 Sum_probs=169.6
Q ss_pred hhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh---------ccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 005136 432 FDLVFAVFNEMLLSGEIPNK-STFSSVLCASA---------SVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGD 501 (712)
Q Consensus 432 ~~~a~~~~~~~~~~g~~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 501 (712)
.++|...|++..+. .|+. ..+..+..++. ..+++++|...+++..+.. +.+...+..+..++...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 35567777777664 3433 33333333222 3345778888888887764 4466777778888888999
Q ss_pred hHHHHHHhccCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHh
Q 005136 502 IESSRRVFDRMPD--K-NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNEL-TILSVLFACSHSGLVDKGLKYFNS 577 (712)
Q Consensus 502 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 577 (712)
+++|...|++..+ | +...+..+...+...|++++|+..++++.+ +.|+.. .+..++..+...|++++|+..+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999998763 3 345688888899999999999999999998 566643 233444456668899999999998
Q ss_pred cchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHH-HHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 578 MEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLL-SGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 578 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
+... ..| ++..+..++.+|...|+.++|...++++ +..|+.......+ ..+...| +.|...++++++..-..+
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 7632 235 4556788899999999999999999987 4456655544444 4466666 477777777766432322
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 655 AGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 655 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
.-...+..+|.-.|+.+.+..+ +++.+.+
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 2233377788888888777766 8887764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.6e-07 Score=89.15 Aligned_cols=446 Identities=12% Similarity=0.085 Sum_probs=193.1
Q ss_pred HhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 005136 194 CAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIF 273 (712)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 273 (712)
|...+++...++..+.+++ +.+....+.....-.+...|+.++|..........|+
T Consensus 17 ~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~----------------------- 72 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL----------------------- 72 (700)
T ss_pred HHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-----------------------
Confidence 3456778888888888877 4445555555554555567888888877775554332
Q ss_pred hhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHH
Q 005136 274 DEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPN-TSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVF 352 (712)
Q Consensus 274 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 352 (712)
.+.+.|..+.-.+....++++|++.|+.... +.|| ...+.-+.-.-++.++++..........+.. +....
T Consensus 73 -----~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra 144 (700)
T KOG1156|consen 73 -----KSHVCWHVLGLLQRSDKKYDEAIKCYRNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRA 144 (700)
T ss_pred -----ccchhHHHHHHHHhhhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHH
Confidence 2334444444444444555555555555444 2222 2223333223334444444444444444321 11233
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhcCC--CCceeeHH------HHHHHHhccCChhhHHHHhhcCCCC---CcccHHH
Q 005136 353 ISNALIDLYSKCGETKDGRLVFDSIVEKD--VAHVVSWN------SMIGGYGLNGQMEEAKELFDNMPKR---NDVSWSA 421 (712)
Q Consensus 353 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~------~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ 421 (712)
.|..++.++.-.|+...|..+++...+.. .|+...+. .........|..++|.+.+...... ....-.+
T Consensus 145 ~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ 224 (700)
T KOG1156|consen 145 SWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEET 224 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhh
Confidence 34444444555555555555555444333 12222211 1112234445555555554444321 1112233
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhccCchHHHH-HHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 005136 422 IISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLC-ASASVASLEKGK-DLHGKIIKLGFPYDVFLGTALTDTYAKS 499 (712)
Q Consensus 422 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 499 (712)
-...+.+.+++++|..++..++..+ ||..-|...+. ++.+..+..++. .++....+. .|.......+--.....
T Consensus 225 ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~ 300 (700)
T KOG1156|consen 225 KADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNG 300 (700)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCc
Confidence 3445555666666666666666542 44443333332 222222222222 333333221 11000000000000011
Q ss_pred CCh-HHHHHHhccCCCCC-cchHHHHHHHHHHcCChHHHHHHHHHHHH----cC----------CCCCHH--HHHHHHHH
Q 005136 500 GDI-ESSRRVFDRMPDKN-EISWTVMVRGLAESGYAKESINLFEEMEK----TS----------ITPNEL--TILSVLFA 561 (712)
Q Consensus 500 g~~-~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~----------~~p~~~--~~~~l~~~ 561 (712)
.++ +....++....+.. +.++..+...|-.....+-..++...+.. .| -+|... ++.-+...
T Consensus 301 eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh 380 (700)
T KOG1156|consen 301 EELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH 380 (700)
T ss_pred chhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH
Confidence 111 11112222222111 12222222222211111111111111110 00 123332 23344555
Q ss_pred hcccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHH
Q 005136 562 CSHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRLSEAEDFINSMPF--EPDSNAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~ 638 (712)
+-..|+++.|..+++... +..|+ +..|..-++++...|.+++|..++++... .||...-...+.-..+.+..++
T Consensus 381 ~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~e 457 (700)
T KOG1156|consen 381 YDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEE 457 (700)
T ss_pred HHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHH
Confidence 666677777777777666 33553 44555556666677777777777766632 2222221223333456666666
Q ss_pred HHHHHHHHhccCCC---------CCchHHHHHHHHHhcCCchhHHHHHH
Q 005136 639 AERAVKNLWKLAEE---------HPAGYVLLSNIYASAGRWIDAMNVRK 678 (712)
Q Consensus 639 a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~eA~~~~~ 678 (712)
|.+++.+--.-.-+ -.++...=|.+|.++|++-+|++=+.
T Consensus 458 A~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 458 AEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred HHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 66666554332211 11233333555666666666665433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.3e-11 Score=79.13 Aligned_cols=50 Identities=28% Similarity=0.563 Sum_probs=45.1
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 005136 147 QNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAE 196 (712)
Q Consensus 147 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 196 (712)
||+.+||.+|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998864
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-09 Score=105.55 Aligned_cols=188 Identities=14% Similarity=0.132 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcc
Q 005136 489 GTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSH 564 (712)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 564 (712)
+..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|+..|++..+ +.|+ ...+..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 44444455555666666555555432 2334555566666666666666666666655 3443 2445555555555
Q ss_pred cCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 005136 565 SGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-P-FEPDSNAWASLLSGCKTYKNEQIAERA 642 (712)
Q Consensus 565 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~ 642 (712)
.|++++|++.|+.... ..|+..........+...+++++|...+++. . ..|+...+ .+. ....|+...+ ..
T Consensus 145 ~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~--~~~lg~~~~~-~~ 217 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIV--EFYLGKISEE-TL 217 (296)
T ss_pred CCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHH--HHHccCCCHH-HH
Confidence 6666666666665552 2442221111112223445566666666443 1 12221111 111 1123333222 12
Q ss_pred HHHHh-------ccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 643 VKNLW-------KLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 643 ~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
++.+. ++.|+.+++|..||.++.+.|++++|+..|++.++.++
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 22221 23344455666666666666666666666666665443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.4e-07 Score=91.28 Aligned_cols=259 Identities=11% Similarity=0.099 Sum_probs=168.0
Q ss_pred CCChhHHHHHHHH--HHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc-C--------CCCC
Q 005136 115 ERNEVSWTALISG--FMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLES-G--------VKPN 183 (712)
Q Consensus 115 ~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~ 183 (712)
..|+.|...+++. |..-|+.+.|.+-.+-+. +...|..|...|.+.++.+-|.-.+.-|... | -.|+
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 3577787777764 667888888887766554 4457888888898888888887777666432 1 1122
Q ss_pred HhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCC-CCcchHHHHHHHHHh
Q 005136 184 EVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEK-RDVVSWTVILDVFIE 262 (712)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~ll~~~~~ 262 (712)
.+=..+.-.....|..++|+.++.+.++.+ .|=..|-..|.+++|.++-+.-.. .-..||......+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 222233334457788899999998887654 344556667889998888764333 233477777778888
Q ss_pred cCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHH
Q 005136 263 MGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHV 342 (712)
Q Consensus 263 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 342 (712)
.++.+.|++.|++...+--..+..|. .++.....+.+.+ .|...|......+-..|+.+.|+.++...
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 88888888888876554322222221 1222222333332 23345555555666778888888888766
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcC
Q 005136 343 LKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNM 411 (712)
Q Consensus 343 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 411 (712)
.+ |.++++..|-.|+.++|-.+-++-. +..+.-.+.+.|...|++.+|+..|.+.
T Consensus 939 ~D---------~fs~VrI~C~qGk~~kAa~iA~esg-----d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 939 KD---------YFSMVRIKCIQGKTDKAARIAEESG-----DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hh---------hhhheeeEeeccCchHHHHHHHhcc-----cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 54 4556677777788888877765543 2445666777788888888887777654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-09 Score=113.24 Aligned_cols=211 Identities=12% Similarity=0.062 Sum_probs=163.5
Q ss_pred CchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH---------hcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCC
Q 005136 465 ASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYA---------KSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGY 532 (712)
Q Consensus 465 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 532 (712)
++.++|..++++..+.. +.+...+..+..++. ..+++++|...+++..+ .+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34678889998888763 334455655655544 23457899999988774 355678888888999999
Q ss_pred hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCChHHHHHH
Q 005136 533 AKESINLFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRLSEAEDF 610 (712)
Q Consensus 533 ~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 610 (712)
+++|+..++++.+ +.|+. ..+..+..++...|++++|+..++++. .+.|+ ...+..++..+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 56754 567788889999999999999999998 44674 33444455567778999999999
Q ss_pred HHhCC-C-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 611 INSMP-F-EPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 611 ~~~~~-~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
+++.. . .|+ +..+..+..++...|+.++|...++++....|++......++..|...| ++|...++++.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98872 2 354 4445666667889999999999999998888988888889999999888 4888888887764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.9e-10 Score=99.19 Aligned_cols=236 Identities=11% Similarity=0.066 Sum_probs=173.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 005136 421 AIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSG 500 (712)
Q Consensus 421 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 500 (712)
.+.++|.+.|-+.+|...|+..+.. .|-+.||..+-.+|.+..++..|..++.+-.+. ++.++.......+.+...+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 3555556666666667777766664 455566777777777777777777777766554 3445555556667777788
Q ss_pred ChHHHHHHhccCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHh
Q 005136 501 DIESSRRVFDRMPDK---NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNS 577 (712)
Q Consensus 501 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 577 (712)
+.++|.++++...+. ++....++...|.-.++++-|+..++++.+.|+ -+...|+.+.-+|.-.++++-++.-|++
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 888888888887643 455555666778888999999999999999875 3556777888888888999999988888
Q ss_pred cchhcCCCC--chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 005136 578 MEPIYNIKP--NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 578 ~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
.. .....| -..+|..++...+..|++.-|.+.|+-. ...|+ ...++++.-.-.+.|+.++|..++..+..+.|+-
T Consensus 384 Al-stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 384 AL-STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HH-hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 76 223344 3668888999999999999999998876 33443 6777888777889999999999999999888885
Q ss_pred CchHHHHH
Q 005136 654 PAGYVLLS 661 (712)
Q Consensus 654 ~~~~~~l~ 661 (712)
.+....|+
T Consensus 463 ~E~~~Nl~ 470 (478)
T KOG1129|consen 463 AEVTTNLQ 470 (478)
T ss_pred ccccccee
Confidence 55444443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.4e-09 Score=96.67 Aligned_cols=198 Identities=15% Similarity=0.190 Sum_probs=110.9
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 005136 417 VSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTY 496 (712)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 496 (712)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+.+..+..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------- 95 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--------------- 95 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------
Confidence 345556666666666666666666665532 2223344444444555555555555554444332
Q ss_pred HhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHH
Q 005136 497 AKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYF 575 (712)
Q Consensus 497 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 575 (712)
+.+...+..+...+...|++++|.+.+++.......| ....+..+..++...|++++|...+
T Consensus 96 -----------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 96 -----------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred -----------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1222344455555666666666666666665532222 2234555566666677777777777
Q ss_pred HhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 005136 576 NSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF-EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLA 650 (712)
Q Consensus 576 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 650 (712)
++... ..| +...+..++..+...|++++|...+++. .. ..+...+......+...|+.++|..+.+.+....
T Consensus 159 ~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 159 TRALQ---IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHH---hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 76652 233 4556666777777777777777777665 22 2234444455555666777777777766655443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-10 Score=76.71 Aligned_cols=50 Identities=24% Similarity=0.478 Sum_probs=45.7
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005136 414 RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASAS 463 (712)
Q Consensus 414 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 463 (712)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888999999999999999999999999999999999999999999875
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-07 Score=82.64 Aligned_cols=387 Identities=11% Similarity=0.050 Sum_probs=225.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHH-HHHHHHH
Q 005136 284 WSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISN-ALIDLYS 362 (712)
Q Consensus 284 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 362 (712)
+.+.+..+.+..++++|++++..-.+.. +.+....+.+..+|....++..|...++++-... |...-|. --...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 4445555556666666666666554422 1244555566666666666666666666665432 3222222 1233445
Q ss_pred hcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCC-CCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 005136 363 KCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMP-KRNDVSWSAIISGYLEHKQFDLVFAVFNE 441 (712)
Q Consensus 363 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 441 (712)
+.+.+..|+.+...|.+..--.......-....-..+++..+..++++.+ +.+..+.+.......+.|+++.|.+-|+.
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 56667777777766655421111111111222345677777777887777 35666777777777788888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC-------------Cchh---------------hHHHHH
Q 005136 442 MLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFP-------------YDVF---------------LGTALT 493 (712)
Q Consensus 442 ~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~---------------~~~~l~ 493 (712)
..+-|---....|+..+ +..+.++++.|.++..+++++|+. ||.. .++.-.
T Consensus 170 AlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 77654333345565444 455678888888888888876543 1111 122222
Q ss_pred HHHHhcCChHHHHHHhccCCC-----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCc
Q 005136 494 DTYAKSGDIESSRRVFDRMPD-----KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGL 567 (712)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 567 (712)
..+.+.|+++.|.+.+..|+. .|+++...+.-.- ..+++.+..+-+.-+... .| ...||..++-.|++..-
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHH
Confidence 345678999999999999984 4777766654332 235566666666666664 44 44788899999999999
Q ss_pred HHHHHHHHHhcchhcCCCC-chHHHHHHHHHhh-hcCChHHHHHHHHhCCCCCCHHHHHHHHHH-HhhcCCH----HHHH
Q 005136 568 VDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLS-RSGRLSEAEDFINSMPFEPDSNAWASLLSG-CKTYKNE----QIAE 640 (712)
Q Consensus 568 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~----~~a~ 640 (712)
++.|-.++.+-. +.-..- +...|+ |.+++. -.-..++|.+-+..+...-........+.. -.+..+- ..+.
T Consensus 326 f~lAADvLAEn~-~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai 403 (459)
T KOG4340|consen 326 FDLAADVLAENA-HLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAV 403 (459)
T ss_pred HhHHHHHHhhCc-chhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999887643 111111 333333 333333 344567776666554210000000111111 1112221 2233
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 641 RAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 641 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+-++..+++. -.+.+..+|.|++..++.-+.+.|.+-.+
T Consensus 404 ~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 404 NEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 3444444443 24788899999999999999999987655
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.7e-08 Score=97.99 Aligned_cols=208 Identities=19% Similarity=0.274 Sum_probs=121.2
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC-------C-C---hhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHH
Q 005136 92 CMINANIQWGNLEEAQRLFDGMPE-------R-N---EVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFV 160 (712)
Q Consensus 92 ~l~~~~~~~g~~~~A~~~~~~~~~-------~-~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 160 (712)
.+...|...+++.+|..+|+++.. + + ..+++.|...|.+.|++++|..++++
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~----------------- 308 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCER----------------- 308 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHH-----------------
Confidence 345566666777777777665542 1 2 23556666677777777777776554
Q ss_pred hcCChhHHHHHHHHHHHcCCC-CCH-hhHHHHHHHHhcccchHHHHHHHHHHHHhC---CCC----CccHHHHHHHHHHc
Q 005136 161 QNGFSFEALKLFLKLLESGVK-PNE-VTFSSICKACAEINDFRLGLSVFGLIFKAG---FEK----HVSVCNSLITLSLK 231 (712)
Q Consensus 161 ~~g~~~~A~~~~~~m~~~g~~-p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~ 231 (712)
|.++++.. .|.. |.. ..++.++..|...+++++|..+++...+.- +.+ ...+++.|...|..
T Consensus 309 -------Al~I~~~~--~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~ 379 (508)
T KOG1840|consen 309 -------ALEIYEKL--LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK 379 (508)
T ss_pred -------HHHHHHHh--hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 55555552 1222 222 234556666777778888877777654421 112 23466667777777
Q ss_pred cCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCC----ceeHHHHHHHHHhcCChhHHHHHHHHH
Q 005136 232 MGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERN----EVSWSVMIARYNQSGYPEEAFRLFRQM 307 (712)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m 307 (712)
.|++++|.+++++ |+...++..... ...++.|...|.+.+++++|.++|.+.
T Consensus 380 ~gk~~ea~~~~k~------------------------ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 380 MGKYKEAEELYKK------------------------AIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred hcchhHHHHHHHH------------------------HHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 7777777777662 333333332211 124556666677777777777777665
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhh
Q 005136 308 TRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIV 378 (712)
Q Consensus 308 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 378 (712)
.... ..| ..+.+....+|..|...|...|+++.|.++.+.+.
T Consensus 436 ~~i~------------~~~-----------------g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIM------------KLC-----------------GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHH------------HHh-----------------CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4310 011 01122235677888888888888888888877765
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8e-08 Score=87.23 Aligned_cols=200 Identities=15% Similarity=0.122 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHH---HHHHHH
Q 005136 351 VFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSA---IISGYL 427 (712)
Q Consensus 351 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---l~~~~~ 427 (712)
+.-..-+...+...|++..|+..|....+.++.+..++..-...|...|+...|+.-+.++.+-.+..+.+ -...+.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 33344556667777788888888887777776555555555556666777766666666655433322222 234567
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC--H------------HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHH
Q 005136 428 EHKQFDLVFAVFNEMLLSGEIPN--K------------STFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALT 493 (712)
Q Consensus 428 ~~~~~~~a~~~~~~~~~~g~~p~--~------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 493 (712)
+.|.++.|..=|+..++.....+ . ......+..+.-.|+...++..+..+.+.. +-+...+..-.
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Ra 196 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARA 196 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHH
Confidence 77888888888887776532111 0 112223444556677777777777777642 44666777777
Q ss_pred HHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 005136 494 DTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNEL 553 (712)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 553 (712)
.+|...|++..|+.-++... ..+....-.+...+...|+.+.++...++..+ +.||..
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 77777888777766555443 34555555666677777777777777777777 566653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4e-08 Score=84.44 Aligned_cols=197 Identities=12% Similarity=0.099 Sum_probs=128.9
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcC
Q 005136 455 SSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESG 531 (712)
Q Consensus 455 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 531 (712)
..+.-.|...|++..|..-+++..+.. +.+..++..+...|.+.|+.+.|.+.|+... ..+-.+.|.....+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 334445556666666666666655543 3445556666666777777777777776654 234456667777777777
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHH
Q 005136 532 YAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAED 609 (712)
Q Consensus 532 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 609 (712)
++++|...|++......-| -..+|..+.-+..+.|+.+.|..+|++.. ...| .+.....+.+.+...|++..|..
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL---~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL---ELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH---HhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 7777777777777643333 23567777777777777777777777776 3355 45666777777777777777777
Q ss_pred HHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 610 FINSM--PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 610 ~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
++++. ...+....+...+..-...||.+.+.++-.++....|.+++
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 77776 23456666655555666777777777777777777777654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-07 Score=83.03 Aligned_cols=201 Identities=18% Similarity=0.170 Sum_probs=116.1
Q ss_pred hcCCHHHHHHHHhhCC-CCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 005136 262 EMGDLGEARRIFDEMP-ERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHA 340 (712)
Q Consensus 262 ~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 340 (712)
..+++..+..+.++.. +.+..+.+...-...+.|+++.|++-|+...+-+--.....|+..+. ..+.++++.|++...
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iS 202 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHIS 202 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHH
Confidence 4456666666666666 34555555555555677888888888888776544444556666554 345577888888888
Q ss_pred HHHHcCCCCcHHH----HHHHHHHHHhcCCh-HHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCC-
Q 005136 341 HVLKIGIEKDVFI----SNALIDLYSKCGET-KDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKR- 414 (712)
Q Consensus 341 ~~~~~~~~~~~~~----~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 414 (712)
+++++|+...+.. .+..+++-. .|+. ..+..- -+.++|.-...+.+.++.+.|.+.+..|+.+
T Consensus 203 EIieRG~r~HPElgIGm~tegiDvrs-vgNt~~lh~Sa----------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa 271 (459)
T KOG4340|consen 203 EIIERGIRQHPELGIGMTTEGIDVRS-VGNTLVLHQSA----------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRA 271 (459)
T ss_pred HHHHhhhhcCCccCccceeccCchhc-ccchHHHHHHH----------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcc
Confidence 8887765432211 000111000 0000 000000 0334555556667788888888888888743
Q ss_pred ----CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHH
Q 005136 415 ----NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGK 476 (712)
Q Consensus 415 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 476 (712)
|++|...+.-.-. .+++....+-++-++..+ +-...||..++-.||+..-++.|-.++.+
T Consensus 272 E~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 272 EEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred cccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6666665543322 233444444455555443 23456788888888888888877777665
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.5e-08 Score=92.37 Aligned_cols=228 Identities=11% Similarity=0.011 Sum_probs=146.7
Q ss_pred hHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHh
Q 005136 433 DLVFAVFNEMLLSG-EIPN--KSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVF 509 (712)
Q Consensus 433 ~~a~~~~~~~~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 509 (712)
+.++.-+.+++... ..|+ ...|......+...|+.+.|...+.+..+.. +.+...+..+...+...|++++|...|
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33355555555432 1222 2345555556667777777777777776653 445677788888888888888888888
Q ss_pred ccCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC
Q 005136 510 DRMPD--K-NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP 586 (712)
Q Consensus 510 ~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 586 (712)
+...+ | +...|..+..++...|++++|++.+++..+ ..|+..........+...++.++|...|++... ...|
T Consensus 122 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~ 197 (296)
T PRK11189 122 DSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDK 197 (296)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCc
Confidence 88753 3 445777788888999999999999999988 566654322222334556789999999976542 2233
Q ss_pred chHHHHHHHHHhhhcCChHH--HHHHHHhC-CCC----C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC-CCCchH
Q 005136 587 NGRHYTCVVDMLSRSGRLSE--AEDFINSM-PFE----P-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAE-EHPAGY 657 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~~----p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~~~~~~ 657 (712)
+...+ .+. +...|+..+ +.+.+.+. ... | ....|..+...+...|++++|+..++++++.+| +..+.-
T Consensus 198 ~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 198 EQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred cccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 32222 223 233455433 33333322 211 2 245788888889999999999999999999997 555555
Q ss_pred HHHHHHHHhcC
Q 005136 658 VLLSNIYASAG 668 (712)
Q Consensus 658 ~~l~~~~~~~g 668 (712)
..++......+
T Consensus 275 ~~~~e~~~~~~ 285 (296)
T PRK11189 275 YALLELALLGQ 285 (296)
T ss_pred HHHHHHHHHHh
Confidence 55555544433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-07 Score=89.43 Aligned_cols=408 Identities=13% Similarity=0.125 Sum_probs=254.9
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCh
Q 005136 257 LDVFIEMGDLGEARRIFDEMPE---RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPN-TSCFSIVLSALASLKAL 332 (712)
Q Consensus 257 l~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~ 332 (712)
.+..+..|+++.|+.+|.+... +|.+.|..=..+|...|++++|++=-.+-++ +.|+ ...|+....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 3566789999999999988764 5667788888999999999999887766665 5565 56899999999999999
Q ss_pred hhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHH---HHHHHhhhcCC----CCceeeHHHHHHHHh---------
Q 005136 333 RSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDG---RLVFDSIVEKD----VAHVVSWNSMIGGYG--------- 396 (712)
Q Consensus 333 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~----~~~~~~~~~l~~~~~--------- 396 (712)
++|+..|.+-++.. +.+...++.+..++.......+. -.++..+.... .-....|..++..+-
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999887763 33567778888877221000000 00111111000 001122222322221
Q ss_pred -ccCChhhHHHHhhcC----------------CCC------------C----------cccHHHHHHHHHhcCChhHHHH
Q 005136 397 -LNGQMEEAKELFDNM----------------PKR------------N----------DVSWSAIISGYLEHKQFDLVFA 437 (712)
Q Consensus 397 -~~~~~~~a~~~~~~~----------------~~~------------~----------~~~~~~l~~~~~~~~~~~~a~~ 437 (712)
.-.++.++...+... ..| | ..-...++++..+..++..|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 111111221111111 011 0 1125667888888888999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc------hhhHHHHHHHHHhcCChHHHHHHhcc
Q 005136 438 VFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYD------VFLGTALTDTYAKSGDIESSRRVFDR 511 (712)
Q Consensus 438 ~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 511 (712)
.+....... -+..-++....++...|.+......-....+.|...- ...+..+..+|.+.++++.+...|.+
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 988887754 4444455555677777777666655555544432211 11122234466667778888887777
Q ss_pred CCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chH
Q 005136 512 MPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNEL-TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGR 589 (712)
Q Consensus 512 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~ 589 (712)
...+... -....+....+++++..+...- +.|... -...-...+.+.|++..|+..|.+++.. .| |..
T Consensus 324 aLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---~P~Da~ 393 (539)
T KOG0548|consen 324 ALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR---DPEDAR 393 (539)
T ss_pred HhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---CCchhH
Confidence 5421111 1112233445555555555444 445432 2223356677889999999999888733 57 788
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 005136 590 HYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASA 667 (712)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 667 (712)
.|...+-+|.+.|.+..|+.-.+.. ...|+ ...|..=..++....+++.|.+.|+++++.+|++..+...+..++..+
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 8889999999999999888877766 44554 445555566667778899999999999999999888888888888765
Q ss_pred CCchhHHHHHHH
Q 005136 668 GRWIDAMNVRKL 679 (712)
Q Consensus 668 g~~~eA~~~~~~ 679 (712)
...+...++.++
T Consensus 474 ~~~~~~ee~~~r 485 (539)
T KOG0548|consen 474 RGDETPEETKRR 485 (539)
T ss_pred hcCCCHHHHHHh
Confidence 444555555544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.7e-08 Score=93.14 Aligned_cols=155 Identities=15% Similarity=0.198 Sum_probs=106.8
Q ss_pred HHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc----cCcHH
Q 005136 494 DTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSH----SGLVD 569 (712)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 569 (712)
.++...|++++|.+++... .+.......+..+.+.++++.|.+.++.|.+ +..|. +...+..++.. .+.+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHH
Confidence 4566778888888888775 4555666677888899999999999999887 44443 34444444432 34688
Q ss_pred HHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCH-HHHHHHHHHH
Q 005136 570 KGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNE-QIAERAVKNL 646 (712)
Q Consensus 570 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 646 (712)
+|..+|+++.+ ...+++.+.+.++.++...|++++|.+++++. ...| ++.++.+++-+....|+. +.+.+++.++
T Consensus 185 ~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 88888888873 33457777888888888888888888888775 3334 366666776666666766 6677788888
Q ss_pred hccCCCCCc
Q 005136 647 WKLAEEHPA 655 (712)
Q Consensus 647 ~~~~p~~~~ 655 (712)
....|++|.
T Consensus 263 ~~~~p~h~~ 271 (290)
T PF04733_consen 263 KQSNPNHPL 271 (290)
T ss_dssp HHHTTTSHH
T ss_pred HHhCCCChH
Confidence 888888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.5e-07 Score=86.85 Aligned_cols=176 Identities=12% Similarity=0.063 Sum_probs=116.9
Q ss_pred HHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC--CCCcc-hHHHHHHHHHHcCCh
Q 005136 457 VLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP--DKNEI-SWTVMVRGLAESGYA 533 (712)
Q Consensus 457 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~ 533 (712)
+-.++.+.++++.+..++.+.......|+. ..+....+++........ .|... -...-...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH
Confidence 334666678889999999886654334332 223344455554444433 22221 122226678899999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHH
Q 005136 534 KESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFIN 612 (712)
Q Consensus 534 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 612 (712)
..|++.|.+++... +.|...|..-.-+|.+.|.+..|+.-.+... .+.| ....|..-+.++....++++|.+.|+
T Consensus 375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i---eL~p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCI---ELDPNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999953 3356789999999999999999999888887 3466 45667677778888889999999999
Q ss_pred hC-CCCCCHHHHHHHHHHHhhc-CCHHHHHHHHHH
Q 005136 613 SM-PFEPDSNAWASLLSGCKTY-KNEQIAERAVKN 645 (712)
Q Consensus 613 ~~-~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~ 645 (712)
+. ...|+..-+..-+.-|... .....-+++.++
T Consensus 451 eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 451 EALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 87 5567655444444444432 333334444454
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-07 Score=92.82 Aligned_cols=307 Identities=12% Similarity=0.140 Sum_probs=143.7
Q ss_pred HHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhh
Q 005136 324 SALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEE 403 (712)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 403 (712)
..+...|++++|++.+..-... +.............+.+.|+.++|..+|..+.+.+|.+..-|..+..+..-.....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~- 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS- 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc-
Confidence 3445667777777776553332 23334455566667777777777777777777777666666665555553322100
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCch-HHHHHHHHHHHHcCC
Q 005136 404 AKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASL-EKGKDLHGKIIKLGF 482 (712)
Q Consensus 404 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~ 482 (712)
..+.+...++|+++...- |.......+.-.+.....+ ..+..++..+.+.|+
T Consensus 90 -------------------------~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv 142 (517)
T PF12569_consen 90 -------------------------DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV 142 (517)
T ss_pred -------------------------cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 012233377777776643 4444444343333332222 234455555556664
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHH
Q 005136 483 PYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE--LTILSVLF 560 (712)
Q Consensus 483 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~ 560 (712)
|+ +|..|-..|....+.+-..+++..... .+...+.+.... ....-.|+. .++..+..
T Consensus 143 Ps---lF~~lk~Ly~d~~K~~~i~~l~~~~~~-----------~l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAq 202 (517)
T PF12569_consen 143 PS---LFSNLKPLYKDPEKAAIIESLVEEYVN-----------SLESNGSFSNGD------DEEKEPPSTLLWTLYFLAQ 202 (517)
T ss_pred ch---HHHHHHHHHcChhHHHHHHHHHHHHHH-----------hhcccCCCCCcc------ccccCCchHHHHHHHHHHH
Confidence 43 333344444433333322222222110 000000000000 000012222 12233344
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHH-HHHHHHHhhcCCHH
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMP-FEPDSNAW-ASLLSGCKTYKNEQ 637 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~-~~l~~~~~~~g~~~ 637 (712)
.|...|++++|++++++.+ ...| .+..|..-+++|-+.|++.+|.+.++... ..+....+ ...+..+.+.|+.+
T Consensus 203 hyd~~g~~~~Al~~Id~aI---~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e 279 (517)
T PF12569_consen 203 HYDYLGDYEKALEYIDKAI---EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIE 279 (517)
T ss_pred HHHHhCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHH
Confidence 4555566666666665555 2244 35555555556666666666666555552 22222222 22233345556666
Q ss_pred HHHHHHHHHhccC--CCC-------CchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 638 IAERAVKNLWKLA--EEH-------PAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 638 ~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+|+..+..-...+ |.. .+.....|.+|.+.|++..|+..+..+.+
T Consensus 280 ~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 280 EAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6665555543322 111 23444556667777777777666655443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.4e-09 Score=97.49 Aligned_cols=243 Identities=12% Similarity=0.042 Sum_probs=154.7
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHH
Q 005136 427 LEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSR 506 (712)
Q Consensus 427 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 506 (712)
.-.|++..++.-.+ .....-..+......+.+++...|+++.+. .++.+.. .|.......+...+...++.+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34455555554444 111111122333445556666666655432 3333322 555555555555444434555666
Q ss_pred HHhccCC-CC----CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchh
Q 005136 507 RVFDRMP-DK----NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPI 581 (712)
Q Consensus 507 ~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 581 (712)
.-++... ++ +..........+...|++++|++++.+. .+.......+..+.+.++++.|.+.++.|.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~-- 158 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ-- 158 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH--
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH--
Confidence 5555443 22 2222222334566789999999988642 455667778899999999999999999997
Q ss_pred cCCCCchHHHHHHHHHhh--h--cCChHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 582 YNIKPNGRHYTCVVDMLS--R--SGRLSEAEDFINSM--PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 582 ~~~~p~~~~~~~l~~~~~--~--~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
.+..| .+...++.+++ . .+++.+|..+|+++ ...+++.+++.++.++...|++++|+..++++++.+|+++.
T Consensus 159 -~~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 159 -QIDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp -CCSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred -hcCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 33444 34444544443 2 34699999999998 34577888888888999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCc-hhHHHHHHHHHhCC
Q 005136 656 GYVLLSNIYASAGRW-IDAMNVRKLMTEKG 684 (712)
Q Consensus 656 ~~~~l~~~~~~~g~~-~eA~~~~~~~~~~~ 684 (712)
++..++.+....|+. +.+.+++.++....
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 999999999999998 56777888877643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=6e-08 Score=86.54 Aligned_cols=150 Identities=9% Similarity=0.078 Sum_probs=115.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcC
Q 005136 524 VRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSG 602 (712)
Q Consensus 524 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 602 (712)
+..|...|+++.+....+.+.. |. ..+...++.++++..++...+ ..| +...|..++..|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC
Confidence 3457778887776444332221 11 012235667777777777763 366 8889999999999999
Q ss_pred ChHHHHHHHHhC-CCCCC-HHHHHHHHHH-HhhcCC--HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHH
Q 005136 603 RLSEAEDFINSM-PFEPD-SNAWASLLSG-CKTYKN--EQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVR 677 (712)
Q Consensus 603 ~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~ 677 (712)
++++|...+++. ...|+ ...+..+..+ +...|+ .++|.++++++++.+|+++.++..|+..+.+.|++++|+..|
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999988 55564 6666677665 467777 599999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccC
Q 005136 678 KLMTEKGLRKS 688 (712)
Q Consensus 678 ~~~~~~~~~~~ 688 (712)
+++++...+.+
T Consensus 168 ~~aL~l~~~~~ 178 (198)
T PRK10370 168 QKVLDLNSPRV 178 (198)
T ss_pred HHHHhhCCCCc
Confidence 99998765443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-08 Score=96.13 Aligned_cols=214 Identities=12% Similarity=0.083 Sum_probs=147.9
Q ss_pred ccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCC---CcchHHHHHHHHHHcCChHHHHHH
Q 005136 463 SVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDK---NEISWTVMVRGLAESGYAKESINL 539 (712)
Q Consensus 463 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~ 539 (712)
+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+++..+. +......|...|...|.-..|++.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3444444444444444332 334445555555555555555566666555432 334455556666666766777777
Q ss_pred HHHHHHcCCCCCHHHHHHHH-----------HHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHH
Q 005136 540 FEEMEKTSITPNELTILSVL-----------FACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAE 608 (712)
Q Consensus 540 ~~~~~~~~~~p~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 608 (712)
++.-+... |... .+. ..+..........++|-++....+..+|+.+...|+-.|.-.|.+++|+
T Consensus 376 L~~Wi~~~--p~y~---~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 376 LDKWIRNK--PKYV---HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHhC--ccch---hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 76655421 1100 000 1223333455566666666655566678999999999999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 609 DFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 609 ~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+.|+.+ ..+|+ ...|+.+...+....+.++|+..|++++++.|....+.+.||..|...|.|.||.++|=..+.
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999987 66775 677888888898899999999999999999999999999999999999999999999887665
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.5e-06 Score=84.79 Aligned_cols=195 Identities=10% Similarity=0.027 Sum_probs=108.3
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHhc
Q 005136 490 TALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSI-TPNE--LTILSVLFACS 563 (712)
Q Consensus 490 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~--~~~~~l~~~~~ 563 (712)
..+...+...|++++|...+++..+ .+...+..+...+...|++++|+..+++...... .|+. ..+..+...+.
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3444556667777777777666552 2344566666677777777777777777665321 1222 23445666677
Q ss_pred ccCcHHHHHHHHHhcchhcCCCCchHHH-H--HHHHHhhhcCChHHHHH------HHHhC-CCCCCHHHHHHHHHHHhhc
Q 005136 564 HSGLVDKGLKYFNSMEPIYNIKPNGRHY-T--CVVDMLSRSGRLSEAED------FINSM-PFEPDSNAWASLLSGCKTY 633 (712)
Q Consensus 564 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~------~~~~~-~~~p~~~~~~~l~~~~~~~ 633 (712)
..|++++|..++++........+..... + .+...+...|....+.. ..... ..............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 7777777777777764211111111111 1 22222233332222222 11111 1101111122345556778
Q ss_pred CCHHHHHHHHHHHhccC-C--------CCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 634 KNEQIAERAVKNLWKLA-E--------EHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 634 g~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
|+.+.|...++.+.... . .........+.++.+.|++++|.+.+...+...
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88888888887775422 1 134566778888899999999999999887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-07 Score=88.99 Aligned_cols=180 Identities=12% Similarity=0.010 Sum_probs=107.9
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHhccCCC--CC-c---chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----H
Q 005136 485 DVFLGTALTDTYAKSGDIESSRRVFDRMPD--KN-E---ISWTVMVRGLAESGYAKESINLFEEMEKTSITPNEL----T 554 (712)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----~ 554 (712)
....+..+...+...|++++|...|+++.+ |+ + ..+..+..++...|++++|+..++++.+ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 344555555666666667666666665542 21 1 2345556666666666666666666665 233221 2
Q ss_pred HHHHHHHhccc--------CcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 005136 555 ILSVLFACSHS--------GLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWAS 625 (712)
Q Consensus 555 ~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 625 (712)
+..+..++... |+++.|.+.|+.+... .|+ ......+..... ..... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence 33344444433 5566666666666522 332 122211111100 00000 001124
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 626 LLSGCKTYKNEQIAERAVKNLWKLAEEHP---AGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 626 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
+...+...|++++|...++++++..|+++ .++..++.++...|++++|..+++.+....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45568899999999999999999987754 789999999999999999999999887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00032 Score=72.97 Aligned_cols=157 Identities=15% Similarity=0.093 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCChH---HHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHH
Q 005136 520 WTVMVRGLAESGYAK---ESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVV 595 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 595 (712)
-+.|+..+.+.++.. +|+-+++.... ..| |..+-..++..|+-.|-...|.+.|+.+.-+ .+..|.-.| .+.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh-~~~ 514 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGH-LIF 514 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchH-HHH
Confidence 455666777776654 44445554444 233 3344456677777778888888888776522 333332222 223
Q ss_pred HHhhhcCChHHHHHHHHhC-CC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHhcC
Q 005136 596 DMLSRSGRLSEAEDFINSM-PF-EPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE----HPAGYVLLSNIYASAG 668 (712)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~-~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g 668 (712)
..+...|++..+...++.. .. ..+ ..+-. ++....+.|.+..-.++..---.+.-. -..+-......+...+
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e-yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPE-YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445566777776666654 11 111 11111 222233566666655544322222211 1223344555566677
Q ss_pred CchhHHHHHHHHH
Q 005136 669 RWIDAMNVRKLMT 681 (712)
Q Consensus 669 ~~~eA~~~~~~~~ 681 (712)
+..+-...+..|.
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 7766666665554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.4e-07 Score=79.59 Aligned_cols=94 Identities=14% Similarity=-0.060 Sum_probs=59.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 005136 591 YTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAG 668 (712)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 668 (712)
+..++..+...|++++|...|+.. ...| +...+..+..++...|++++|...++++++++|+++.++..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 444566666666666666666665 3333 35555666666666666666666666666666666666666666666666
Q ss_pred CchhHHHHHHHHHhCC
Q 005136 669 RWIDAMNVRKLMTEKG 684 (712)
Q Consensus 669 ~~~eA~~~~~~~~~~~ 684 (712)
++++|+..+++.++..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6666666666666543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.7e-07 Score=78.99 Aligned_cols=122 Identities=11% Similarity=0.107 Sum_probs=101.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-C
Q 005136 538 NLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-P 615 (712)
Q Consensus 538 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 615 (712)
.++++.++ +.|+. +..+..++...|++++|...|+.+. ...| +...+..++.++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45666666 55664 4456777888999999999999987 4567 7888999999999999999999999998 4
Q ss_pred CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 005136 616 FEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYAS 666 (712)
Q Consensus 616 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 666 (712)
..| +...+..+..++...|+.++|+..++++++..|+++..+...+.+...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 445 577888888889999999999999999999999999999888877654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-05 Score=72.14 Aligned_cols=309 Identities=10% Similarity=0.042 Sum_probs=191.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHH-HHHHHHHH
Q 005136 284 WSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNT-SCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFI-SNALIDLY 361 (712)
Q Consensus 284 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~ 361 (712)
.--+...+...|++.+|+.-|...++ ..|+. .++..-...|...|+...|+.-+..+++. +||... ...-...+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve--~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVE--GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHc--CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 34455666777778888887777766 23332 23333334555566666666666666654 354322 12223456
Q ss_pred HhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 005136 362 SKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNE 441 (712)
Q Consensus 362 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 441 (712)
.+.|.++.|..-|+.+.+.++.+... ..+..+..-.++-+ .....+..+...|+...|+.....
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~----~eaqskl~~~~e~~------------~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLV----LEAQSKLALIQEHW------------VLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchh----HHHHHHHHhHHHHH------------HHHHHHHHHhcCCchhhHHHHHHH
Confidence 77777777777777777666421111 11111111111111 122334556667788888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcc---
Q 005136 442 MLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEI--- 518 (712)
Q Consensus 442 ~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 518 (712)
+++-. +.|...+..-..+|...|++..|+.=+...-+.. ..+...+..+...+...|+.+.++...++..+-|+.
T Consensus 181 llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~ 258 (504)
T KOG0624|consen 181 LLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL 258 (504)
T ss_pred HHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence 87752 4466666667778888888888887777666553 334455556677778888888888888877754332
Q ss_pred ---hHHHH---------HHHHHHcCChHHHHHHHHHHHHcCCCCC--HHH---HHHHHHHhcccCcHHHHHHHHHhcchh
Q 005136 519 ---SWTVM---------VRGLAESGYAKESINLFEEMEKTSITPN--ELT---ILSVLFACSHSGLVDKGLKYFNSMEPI 581 (712)
Q Consensus 519 ---~~~~l---------~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~ 581 (712)
.|..+ +......++|.++++..+...+. .|. ... +..+-.++...|++.+|++...++.
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL-- 334 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL-- 334 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH--
Confidence 12111 12345667788888888877774 343 222 3344556667788888888888887
Q ss_pred cCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC
Q 005136 582 YNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD 619 (712)
Q Consensus 582 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 619 (712)
.+.| |+.++..-+.+|.-...+++|+.-|++. ...++
T Consensus 335 -~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 335 -DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred -hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 4577 5888888888888888888888888887 33443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.3e-05 Score=77.75 Aligned_cols=188 Identities=12% Similarity=0.114 Sum_probs=86.9
Q ss_pred HHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCC-----Cc--chHHHHHHHHHHcCC
Q 005136 460 ASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDK-----NE--ISWTVMVRGLAESGY 532 (712)
Q Consensus 460 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~l~~~~~~~~~ 532 (712)
.+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+. +. ..|..+...+...|+
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 3334444444444444444332 222334444555555555555555555554421 11 123345556666677
Q ss_pred hHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHhcccCcHHHHHHH---HHhcchh-cCCCCchHHHHHHHHHhhhcCCh
Q 005136 533 AKESINLFEEMEKTSI-TPNELTI-L--SVLFACSHSGLVDKGLKY---FNSMEPI-YNIKPNGRHYTCVVDMLSRSGRL 604 (712)
Q Consensus 533 ~~~A~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~a~~~---~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~ 604 (712)
+++|..++++...... .+..... . .++.-+...|....+.+. ....... .+ ..........+.++...|+.
T Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 280 (355)
T cd05804 202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDK 280 (355)
T ss_pred HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCH
Confidence 7777777766643211 1111111 1 122222223322222111 1111100 01 11112223566677788888
Q ss_pred HHHHHHHHhCCC--CC---C----HHHHHHH--HHHHhhcCCHHHHHHHHHHHhcc
Q 005136 605 SEAEDFINSMPF--EP---D----SNAWASL--LSGCKTYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 605 ~~A~~~~~~~~~--~p---~----~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~~ 649 (712)
++|...++.+.. .. . ..+...+ ..++...|+.++|.+.+..++..
T Consensus 281 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 281 DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888877621 11 1 1111222 22367889999999988888764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-06 Score=84.54 Aligned_cols=256 Identities=15% Similarity=0.151 Sum_probs=144.8
Q ss_pred HHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 005136 360 LYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVF 439 (712)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 439 (712)
-+.+.|++.+|.-.|+.....+|.+..+|..|......+++-..| +..+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~a-------------------------------i~AL 342 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNA-------------------------------ISAL 342 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHH-------------------------------HHHH
Confidence 356677788888888888877777777777777777777766666 6666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcch
Q 005136 440 NEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEIS 519 (712)
Q Consensus 440 ~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 519 (712)
++.++.. +-|......|.-.|...|.-..|...+..-++...+--. +.. -...++++.- ... .+.
T Consensus 343 ~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~-----l~~-a~~~~~~~~~----~s~--~~~-- 407 (579)
T KOG1125|consen 343 RRCLELD-PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVH-----LVS-AGENEDFENT----KSF--LDS-- 407 (579)
T ss_pred HHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchh-----ccc-cCccccccCC----cCC--CCH--
Confidence 6665542 223445555555666666666666666555443211000 000 0000000000 000 000
Q ss_pred HHHHHHHHHHcCChHHHHHHH-HHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHH
Q 005136 520 WTVMVRGLAESGYAKESINLF-EEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDM 597 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~A~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 597 (712)
.......++| +.....+..+|......|.-.|--.|++++|++.|+.+. ..+| |...|+.|+..
T Consensus 408 -----------~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL---~v~Pnd~~lWNRLGAt 473 (579)
T KOG1125|consen 408 -----------SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL---QVKPNDYLLWNRLGAT 473 (579)
T ss_pred -----------HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHH---hcCCchHHHHHHhhHH
Confidence 0111222222 333344433555555566666667777777777777776 3466 66677777777
Q ss_pred hhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC----------CchHHHHHHHHH
Q 005136 598 LSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH----------PAGYVLLSNIYA 665 (712)
Q Consensus 598 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----------~~~~~~l~~~~~ 665 (712)
+....+.++|+..|++. .++|. ...+..+.-.|+..|.+++|...+-.++.+.+.+ -.++.+|=.++.
T Consensus 474 LAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als 553 (579)
T KOG1125|consen 474 LANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALS 553 (579)
T ss_pred hcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHH
Confidence 77777777777777776 56676 3344555556777777777777777777654441 135555555555
Q ss_pred hcCCchhHHH
Q 005136 666 SAGRWIDAMN 675 (712)
Q Consensus 666 ~~g~~~eA~~ 675 (712)
-.++.+-+.+
T Consensus 554 ~~~~~D~l~~ 563 (579)
T KOG1125|consen 554 AMNRSDLLQE 563 (579)
T ss_pred HcCCchHHHH
Confidence 5555543333
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-05 Score=89.71 Aligned_cols=54 Identities=20% Similarity=0.138 Sum_probs=25.3
Q ss_pred HHhhcCCHHHHHHHHHHHhccCC------CCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 629 GCKTYKNEQIAERAVKNLWKLAE------EHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 629 ~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
++...|+.++|...++++..... +...++..++.++.+.|+.++|...+.+.++
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555544211 1122344455555555555555555555444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2e-06 Score=92.54 Aligned_cols=201 Identities=12% Similarity=0.105 Sum_probs=161.2
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHhccCCCC--------CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 005136 483 PYDVFLGTALTDTYAKSGDIESSRRVFDRMPDK--------NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELT 554 (712)
Q Consensus 483 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 554 (712)
|.+...|-..+......++.+.|+++.+++.+. -...|.++++.....|.-+...++|+++.+ .......
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHH
Confidence 445556667777777888899988888877631 234688888888888888888999999887 4455567
Q ss_pred HHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 005136 555 ILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD---SNAWASLLSGC 630 (712)
Q Consensus 555 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~ 630 (712)
|..|...|.+.+.+++|.++++.|.++++ .....|...+..+.+.++-+.|..++++. ..-|. ...+...+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88888999999999999999999987666 45678888899999999989999998876 33443 44455566667
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCcc
Q 005136 631 KTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRK 687 (712)
Q Consensus 631 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 687 (712)
.+.||.+.+..+|+-.+..+|.....|.-++..-.+.|..+.++.+|++++..++++
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 789999999999999999999999999999999999999999999999998877654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00071 Score=66.37 Aligned_cols=128 Identities=12% Similarity=0.095 Sum_probs=88.1
Q ss_pred CCCCchhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhc--CCCCcchHHHH
Q 005136 16 SFNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDL--NGFDLVVHNCM 93 (712)
Q Consensus 16 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~l 93 (712)
..|-|+.+|..||+-+-.+ ..++++..++++.+.-+ .....|..-+....+..+++...++|.+. .-.+...|..-
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP-~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lY 92 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFP-SSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLY 92 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 4578999999999988777 89999999999997754 47778888899999999999999999986 34667778777
Q ss_pred HHHHHh-cCChHHHHHH----HhhCC-----C-CChhHHHHHHHH---------HHccCChHHHHHHhhhCC
Q 005136 94 INANIQ-WGNLEEAQRL----FDGMP-----E-RNEVSWTALISG---------FMKHGRVEESMWYFERNP 145 (712)
Q Consensus 94 ~~~~~~-~g~~~~A~~~----~~~~~-----~-~~~~~~~~l~~~---------~~~~g~~~~a~~~~~~~~ 145 (712)
+.--.+ .|...++... |+-.. + ..-..|+..+.. |..+.+++..++.++++.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral 164 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL 164 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence 765443 3444332221 11111 1 233455555544 334446677777777754
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.8e-07 Score=73.51 Aligned_cols=97 Identities=12% Similarity=0.057 Sum_probs=87.6
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+......++..+...|++++|.++|+-+ ...|. ...|..+..+|...|++++|+..|.++..++|++|..+.+++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 5666778888889999999999999988 45564 677888888899999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhC
Q 005136 665 ASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 665 ~~~g~~~eA~~~~~~~~~~ 683 (712)
...|+.++|++.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.1e-07 Score=74.83 Aligned_cols=101 Identities=20% Similarity=0.269 Sum_probs=74.7
Q ss_pred CCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 005136 584 IKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLL 660 (712)
Q Consensus 584 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 660 (712)
..| +......++..+...|++++|...++.. ...| +...+..+...+...|++++|...++++++..|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 355 4455666777777778888888777776 3334 456666666677778888888888888888888888888888
Q ss_pred HHHHHhcCCchhHHHHHHHHHhCC
Q 005136 661 SNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 661 ~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
+.++...|++++|...+++.++..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc
Confidence 888888888888888888777754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00044 Score=79.37 Aligned_cols=404 Identities=11% Similarity=0.027 Sum_probs=215.3
Q ss_pred hhhhHHHHHHHhCCC--C---c--chhhhHHHHHHhcCC----ChhHhHHHHhhcCCCCcchHHHHHHHHHhcCChHHHH
Q 005136 39 QGRALHGHLIKTGIH--K---E--RYLTTRLLIMYLGSR----KSLEANEIVKDLNGFDLVVHNCMINANIQWGNLEEAQ 107 (712)
Q Consensus 39 ~a~~~~~~~~~~~~~--~---~--~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 107 (712)
.+.++++.+.+.|.- + + -+-++.+++-+.+.. +...... .+......+...|++.+|.
T Consensus 293 ~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~-----------lh~raa~~~~~~g~~~~Al 361 (903)
T PRK04841 293 NGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPE-----------LHRAAAEAWLAQGFPSEAI 361 (903)
T ss_pred cHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHH-----------HHHHHHHHHHHCCCHHHHH
Confidence 356677888877751 1 1 234566666554321 1222222 2334445566778888887
Q ss_pred HHHhhCCCCChhH--HHHHHHHHHccCChHHHHHHhhhCCC----CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC--
Q 005136 108 RLFDGMPERNEVS--WTALISGFMKHGRVEESMWYFERNPF----QNVISWTAAICGFVQNGFSFEALKLFLKLLESG-- 179 (712)
Q Consensus 108 ~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-- 179 (712)
............. ...........|+++.+..+++.++. .+..........+...|++++|..++......-
T Consensus 362 ~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~ 441 (903)
T PRK04841 362 HHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKD 441 (903)
T ss_pred HHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccc
Confidence 7776665442221 12223345567888888888877642 223333444555677899999998888775431
Q ss_pred C----CCCH--hhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHccCChHHHHHHHhhcCC--
Q 005136 180 V----KPNE--VTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHV----SVCNSLITLSLKMGEVDLARSVFDRMEK-- 247 (712)
Q Consensus 180 ~----~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~-- 247 (712)
. .+.. .....+...+...|+++.|...++.....-...+. ...+.+...+...|+++.|...+++...
T Consensus 442 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~ 521 (903)
T PRK04841 442 RNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMA 521 (903)
T ss_pred cCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 0 1111 12223344556789999999999888764212221 2345666677788999999988887763
Q ss_pred -----C--CcchHHHHHHHHHhcCCHHHHHHHHhhCCC-------CC----ceeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005136 248 -----R--DVVSWTVILDVFIEMGDLGEARRIFDEMPE-------RN----EVSWSVMIARYNQSGYPEEAFRLFRQMTR 309 (712)
Q Consensus 248 -----~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 309 (712)
+ ...++..+...+...|+++.|...+++... ++ ...+..+...+...|++++|...+++...
T Consensus 522 ~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 522 RQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred hhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 1 112445566677889999999888776532 11 11233444556667888888877777644
Q ss_pred CC--CCCC--HHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCc-HHHH-----HHHHHHHHhcCChHHHHHHHHhhhc
Q 005136 310 YS--FKPN--TSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKD-VFIS-----NALIDLYSKCGETKDGRLVFDSIVE 379 (712)
Q Consensus 310 ~~--~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~ 379 (712)
.. ..+. ...+..+.......|+.+.|...+........... ...+ ...+..+...|+.+.|...+.....
T Consensus 602 ~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 681 (903)
T PRK04841 602 VLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK 681 (903)
T ss_pred hhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC
Confidence 21 1111 22233334444556666666666665543210000 0000 0011223334555555555444332
Q ss_pred CCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHH
Q 005136 380 KDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLS----GEIPN-KSTF 454 (712)
Q Consensus 380 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~p~-~~~~ 454 (712)
........ ....+..+..++...|++++|...+++.... |..++ ..+.
T Consensus 682 ~~~~~~~~---------------------------~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 682 PEFANNHF---------------------------LQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred CCCccchh---------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 11110000 0001223444555666666667666665432 22221 1234
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHc
Q 005136 455 SSVLCASASVASLEKGKDLHGKIIKL 480 (712)
Q Consensus 455 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 480 (712)
..+..++...|+.++|...+.+..+.
T Consensus 735 ~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 735 ILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44445566666766666666666543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.1e-05 Score=67.85 Aligned_cols=155 Identities=15% Similarity=0.191 Sum_probs=84.8
Q ss_pred HHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc----cCcH
Q 005136 493 TDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSH----SGLV 568 (712)
Q Consensus 493 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 568 (712)
...|...|++++|.+.......-+.. -.=+..+.+..+.+-|.+.+++|.+ -.+..|.+.|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~--Al~VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAA--ALNVQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchhh
Confidence 34466667777777766663322222 1223344556666777777777765 2344555555555543 3446
Q ss_pred HHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcC-CHHHHHHHHHH
Q 005136 569 DKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM--PFEPDSNAWASLLSGCKTYK-NEQIAERAVKN 645 (712)
Q Consensus 569 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~ 645 (712)
..|.-+|+++.+ ...|++.+.+-.+.++...|++++|..+++.. +...++.++.+++-.-...| +.+--.+...+
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 666666666652 24556666666666666666666666666665 22334555555544433333 33444555555
Q ss_pred HhccCCCCC
Q 005136 646 LWKLAEEHP 654 (712)
Q Consensus 646 ~~~~~p~~~ 654 (712)
....+|+++
T Consensus 268 Lk~~~p~h~ 276 (299)
T KOG3081|consen 268 LKLSHPEHP 276 (299)
T ss_pred HHhcCCcch
Confidence 666666654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.5e-06 Score=88.63 Aligned_cols=128 Identities=16% Similarity=0.132 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHH
Q 005136 552 ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDS-NAWASLLS 628 (712)
Q Consensus 552 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~ 628 (712)
...+..|.....+.|.+++|...++.+. .+.| +......++.++.+.+++++|...+++. ...|+. .....+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 4444455555555555555555555554 3345 3444445555555555555555555554 334442 22333333
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 629 GCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 629 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
++.+.|++++|.++|++++...|+++.++..++.++...|+.++|...|++.++
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355555555555555555555555555555555555555555555555555543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=7e-06 Score=82.84 Aligned_cols=218 Identities=12% Similarity=0.077 Sum_probs=144.9
Q ss_pred CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC--CCCcchHHHHHH
Q 005136 448 IPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP--DKNEISWTVMVR 525 (712)
Q Consensus 448 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~ 525 (712)
+|-...-..+...+.+.|-...|..+++++. .+...+.+|...|+...|..+..+.. +|++..|..+.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhh
Confidence 3444444455556666666677777666543 34556677777777777766665544 345556666666
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCCh
Q 005136 526 GLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRL 604 (712)
Q Consensus 526 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 604 (712)
......-++.|.++.+..... .-..+.....+.+++.++.+.|+.-. .+.| -..+|..++-+..+.+++
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhh
Confidence 655555566666665543221 11111112234577777777777655 3455 667777777778888888
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 605 SEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 605 ~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+.|.+.|... ...|+ ...|+++..+|.+.|+..+|...++++++-+-++..++....-+...-|.|++|++.+.++.+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8888888776 45665 666888888888888888888888888887777777888888888888888888888888776
Q ss_pred CC
Q 005136 683 KG 684 (712)
Q Consensus 683 ~~ 684 (712)
-.
T Consensus 616 ~~ 617 (777)
T KOG1128|consen 616 LR 617 (777)
T ss_pred hh
Confidence 43
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6e-06 Score=73.12 Aligned_cols=158 Identities=11% Similarity=0.094 Sum_probs=124.7
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHH
Q 005136 516 NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCV 594 (712)
Q Consensus 516 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 594 (712)
|... ..+...+...|+-+....+....... .+.+......++....+.|++..|+..+.+.. ...| |...|+.+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~---~l~p~d~~~~~~l 140 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA---RLAPTDWEAWNLL 140 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHh---ccCCCChhhhhHH
Confidence 4444 56677888888888888887775542 12233455567888888999999999999887 3344 88899999
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchh
Q 005136 595 VDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWID 672 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 672 (712)
+-+|.+.|++++|..-|.+. ...| ++...+++...+.-.|+.+.|+.++..+...-+.+..+-..|+.+....|++++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 99999999999999888876 4444 466677888888889999999999999988888888899999999999999999
Q ss_pred HHHHHH
Q 005136 673 AMNVRK 678 (712)
Q Consensus 673 A~~~~~ 678 (712)
|..+..
T Consensus 221 A~~i~~ 226 (257)
T COG5010 221 AEDIAV 226 (257)
T ss_pred HHhhcc
Confidence 988754
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.4e-05 Score=75.24 Aligned_cols=181 Identities=13% Similarity=0.105 Sum_probs=117.1
Q ss_pred HHhcC-ChHHHHHHhccCCC---CCcchHHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcH
Q 005136 496 YAKSG-DIESSRRVFDRMPD---KNEISWTVMVRGLAESGYA--KESINLFEEMEKTSITP-NELTILSVLFACSHSGLV 568 (712)
Q Consensus 496 ~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 568 (712)
+...| ++++++..++.+.+ ++..+|+.-...+.+.|+. ++++..++++++ ..| |...|.....++...|++
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhH
Confidence 33444 45666666665542 3334555444444455542 567777777777 444 456777777777778888
Q ss_pred HHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhc---CCh----HHHHHHHHhC-CCCCC-HHHHHHHHHHHhhc----C
Q 005136 569 DKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRS---GRL----SEAEDFINSM-PFEPD-SNAWASLLSGCKTY----K 634 (712)
Q Consensus 569 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~----g 634 (712)
+++++.++++.+ ..| |...|+....++.+. |.. ++++++..++ ...|+ ...|..+...+... +
T Consensus 159 ~eeL~~~~~~I~---~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~ 235 (320)
T PLN02789 159 EDELEYCHQLLE---EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALV 235 (320)
T ss_pred HHHHHHHHHHHH---HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccc
Confidence 888888888873 245 566676666665544 222 4566666444 44554 55666666666552 3
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC------------------CchhHHHHHHHHH
Q 005136 635 NEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAG------------------RWIDAMNVRKLMT 681 (712)
Q Consensus 635 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~eA~~~~~~~~ 681 (712)
...+|...+.++.+..|+++.++..|+.+|.... ..++|.++++.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 236 SDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred cchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 4567888888888889999999999999998643 2366888888774
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0016 Score=64.11 Aligned_cols=147 Identities=17% Similarity=0.138 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcCChHHHHHHhc
Q 005136 432 FDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPY-DVFLGTALTDTYAKSGDIESSRRVFD 510 (712)
Q Consensus 432 ~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 510 (712)
.+....+++++...-..--.-+|-..+....+...+..|..+|.++.+.+..+ .+.+..++++.|+ +++.+.|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 45555666665543222222345556666666677777777777777766555 6666677777555 466777777777
Q ss_pred cCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHhcc
Q 005136 511 RMPD--K-NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE--LTILSVLFACSHSGLVDKGLKYFNSME 579 (712)
Q Consensus 511 ~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 579 (712)
--.+ + ++.--...+.-+...++-..|..+|++....++.|+. ..|..++..=..-|+...+.++-++..
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 6542 2 3333445566666777777777777777777555544 567777777777777777777666554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-05 Score=71.57 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=120.0
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005136 485 DVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFA 561 (712)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 561 (712)
|..+ ..+...+...|+-+....+..... ..|......++....+.|++.+|+..+.+.... -++|...|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHH
Confidence 3444 566667777788777777776644 234456666888888999999999999988874 35566888888888
Q ss_pred hcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHH
Q 005136 562 CSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMPF--EPDSNAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~ 638 (712)
|.+.|+.+.|..-|.+.. .+.| ++..++.|+-.|.-.|+++.|..++.+... ..+......+.-+....|++++
T Consensus 144 ldq~Gr~~~Ar~ay~qAl---~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 144 LDQLGRFDEARRAYRQAL---ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHccChhHHHHHHHHHH---HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 999999999998888887 4566 567788888888889999999999888733 2256667777777888999998
Q ss_pred HHHHHHHHh
Q 005136 639 AERAVKNLW 647 (712)
Q Consensus 639 a~~~~~~~~ 647 (712)
|+.+..+-+
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 888766543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.4e-06 Score=84.26 Aligned_cols=189 Identities=16% Similarity=0.158 Sum_probs=162.0
Q ss_pred CCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005136 481 GFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLF 560 (712)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 560 (712)
+++|-...-..+.+.+...|-..+|..++++.. .|...+.+|+..|+..+|..+..+..+ -+|+...|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 456666677788899999999999999999854 677888999999999999999998888 5788899999998
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHH
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 638 (712)
......-+++|.++.+.... ..-..++....+.++++++.+.++.- ...|- ..+|..+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sa--------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISA--------RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhH--------HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 88888889999999876642 23334455556789999999999875 55554 7788888888899999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 639 AERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 639 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
|...|.+.+.++|++...++++..+|.+.|+..+|...+++.++.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999876
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-05 Score=77.26 Aligned_cols=141 Identities=18% Similarity=0.144 Sum_probs=81.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHhcccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhh
Q 005136 522 VMVRGLAESGYAKESINLFEEMEKTSITPNELTIL-SVLFACSHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLS 599 (712)
Q Consensus 522 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 599 (712)
.....+...|++++|+..+..++. -.|+...|. .....+...++.++|.+.++++. ...|+ ......++.+|.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all 385 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHH
Confidence 334445556666666666666665 344443333 33445666666666666666665 33553 444555666666
Q ss_pred hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHH
Q 005136 600 RSGRLSEAEDFINSM--PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVR 677 (712)
Q Consensus 600 ~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~ 677 (712)
+.|++.+|+..+++. ..+.++..|..+..+|...|+..++... .+..|.-.|++++|+..+
T Consensus 386 ~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l 448 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFL 448 (484)
T ss_pred hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHH
Confidence 666666666666665 2233456666666666666665544442 333455566777777777
Q ss_pred HHHHhCC
Q 005136 678 KLMTEKG 684 (712)
Q Consensus 678 ~~~~~~~ 684 (712)
.+..+..
T Consensus 449 ~~A~~~~ 455 (484)
T COG4783 449 MRASQQV 455 (484)
T ss_pred HHHHHhc
Confidence 7766643
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=5e-05 Score=81.58 Aligned_cols=167 Identities=13% Similarity=0.139 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcC
Q 005136 351 VFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHK 430 (712)
Q Consensus 351 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 430 (712)
...+..|+..|...|++++|..+.+...+..+.....|-.+...+.+.++...+.-+ .++.......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~ 97 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence 455566666666667777777776666665555555555555555555555444211 3333333444
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhc
Q 005136 431 QFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFD 510 (712)
Q Consensus 431 ~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 510 (712)
++..+..+...|... .-+...+..+..+|.+.|+.+++..+++++.+.. +.++.+.+.+...|... ++++|.+++.
T Consensus 98 ~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 98 KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 443334444444442 2333455666666667777777777777776665 55666667777766666 7777776655
Q ss_pred cCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005136 511 RMPDKNEISWTVMVRGLAESGYAKESINLFEEMEK 545 (712)
Q Consensus 511 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 545 (712)
+. +..+...+++..+.++|.++..
T Consensus 174 KA-----------V~~~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 174 KA-----------IYRFIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HH-----------HHHHHhhhcchHHHHHHHHHHh
Confidence 53 2335556666677777776666
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-05 Score=71.97 Aligned_cols=151 Identities=13% Similarity=0.160 Sum_probs=112.0
Q ss_pred HHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHH
Q 005136 494 DTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLK 573 (712)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 573 (712)
..|...|+++.+....+.+..+. ..+...++.++++..+++..+.. +.+...|..+...|...|+++.|..
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~ 94 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALL 94 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45677777776654443322211 01123566778888888877742 3456778888899999999999999
Q ss_pred HHHhcchhcCCCC-chHHHHHHHHHh-hhcCC--hHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 005136 574 YFNSMEPIYNIKP-NGRHYTCVVDML-SRSGR--LSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLW 647 (712)
Q Consensus 574 ~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 647 (712)
.|++.. .+.| +...+..++.++ ...|+ .++|.+++++. ...|+ ...+..+...+...|++++|+..+++++
T Consensus 95 a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 95 AYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999887 4567 788888888874 67777 59999999998 55564 6667777777999999999999999999
Q ss_pred ccCCCCCch
Q 005136 648 KLAEEHPAG 656 (712)
Q Consensus 648 ~~~p~~~~~ 656 (712)
+..|.+..-
T Consensus 172 ~l~~~~~~r 180 (198)
T PRK10370 172 DLNSPRVNR 180 (198)
T ss_pred hhCCCCccH
Confidence 998886554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-05 Score=70.65 Aligned_cols=196 Identities=13% Similarity=0.132 Sum_probs=117.7
Q ss_pred chHHHHHHHHHHHH---cC-CCCchh-hHHHHHHHHHhcCChHHHHHHhccCCCCCcch---HHHHHHHHHHcCChHHHH
Q 005136 466 SLEKGKDLHGKIIK---LG-FPYDVF-LGTALTDTYAKSGDIESSRRVFDRMPDKNEIS---WTVMVRGLAESGYAKESI 537 (712)
Q Consensus 466 ~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~ 537 (712)
+.++..+++.++.. .| ..++.. ++..++-+....|+.+.|...++.+...-+.+ -..-...+-..|++++|+
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 34455555555442 23 344433 44555556667777787877777765322222 122223355677888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CC
Q 005136 538 NLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PF 616 (712)
Q Consensus 538 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 616 (712)
++++.+.+.. +.|..++-.-+...-..|..-+|++-+....+ .+..|...|..+...|...|++++|.-.++++ -.
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 8888887754 33445666555556666666677666665552 23347778888888888888888888888877 33
Q ss_pred CCC-HHHHHHHHHHHhhcC---CHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 617 EPD-SNAWASLLSGCKTYK---NEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 617 ~p~-~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
.|- +..+..+...+...| +.+.|..++.+++++.|.+...+..+-.++
T Consensus 184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 443 444555555543333 566777788888888776555544444333
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-05 Score=76.06 Aligned_cols=186 Identities=11% Similarity=0.107 Sum_probs=137.8
Q ss_pred HHhcCChHHHHHHhccCCCC---CcchHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCc--H
Q 005136 496 YAKSGDIESSRRVFDRMPDK---NEISWTVMVRGLAESG-YAKESINLFEEMEKTSITP-NELTILSVLFACSHSGL--V 568 (712)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--~ 568 (712)
+...++.++|......+.+. +..+|+.-...+...| ++++++..++++.+. .| +..+|+.....+.+.|. .
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCchhh
Confidence 44567788888888877643 3345666666666667 679999999999984 44 44566655555555665 3
Q ss_pred HHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc---CC----HHH
Q 005136 569 DKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTY---KN----EQI 638 (712)
Q Consensus 569 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~----~~~ 638 (712)
++++.+++++. ...| |..+|.....++.+.|++++|++.++++ ...| +...|.......... |. .+.
T Consensus 125 ~~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 67888888887 4477 8899999999999999999999999998 4444 355565555444333 22 357
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHh----cCCchhHHHHHHHHHhCCCc
Q 005136 639 AERAVKNLWKLAEEHPAGYVLLSNIYAS----AGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 639 a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~ 686 (712)
...+..+++..+|+|..++..++.++.. .++..+|.+...+..+.+++
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence 8888889999999999999999999988 45667899988887775543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00011 Score=71.23 Aligned_cols=118 Identities=21% Similarity=0.235 Sum_probs=79.5
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHH
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQ 637 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 637 (712)
.+...|+++.|+..++.+.. -.| |+..+...++.+.+.|+..+|.+.++++ ...|+ ...+..+..++...|+..
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 34556677777777777662 245 5666666677777777777777777776 44555 444555666677777777
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 005136 638 IAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMT 681 (712)
Q Consensus 638 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 681 (712)
+|+..++.....+|++|..|..|+.+|..+|+..+|.....+..
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 77777777777777777777777777777777777766655443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-05 Score=75.57 Aligned_cols=184 Identities=13% Similarity=0.035 Sum_probs=124.8
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC-C-chhhHHHHHHHHHhcCChHHHHHHhccCCC--C-Ccc---hH
Q 005136 449 PNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFP-Y-DVFLGTALTDTYAKSGDIESSRRVFDRMPD--K-NEI---SW 520 (712)
Q Consensus 449 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~---~~ 520 (712)
.....+......+...|+++.|...++++.+.... | ....+..+..++...|++++|...++.+.+ | +.. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 44567777888899999999999999999875321 1 124667788899999999999999999863 2 222 35
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHH
Q 005136 521 TVMVRGLAES--------GYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYT 592 (712)
Q Consensus 521 ~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 592 (712)
..+..++... |++++|++.++++.. ..|+......... .+..+... ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~-------------~~~~~~~~-----~~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKK-------------RMDYLRNR-----LAGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHH-------------HHHHHHHH-----HHHHHH
Confidence 5555666554 788999999999988 4565432211111 00000000 001123
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 593 CVVDMLSRSGRLSEAEDFINSM-PF---EP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
.++..|.+.|++++|...+++. .. .| ....+..+..++...|++++|...++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667788888888888888876 22 23 2566777888888889999888888877666553
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.6e-05 Score=80.96 Aligned_cols=203 Identities=16% Similarity=0.225 Sum_probs=116.2
Q ss_pred CCCccHHHHHHHHHHccCChHHHHHHHhhcCC--------CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC-CC-ceeHH
Q 005136 216 EKHVSVCNSLITLSLKMGEVDLARSVFDRMEK--------RDVVSWTVILDVFIEMGDLGEARRIFDEMPE-RN-EVSWS 285 (712)
Q Consensus 216 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~ 285 (712)
|.+...|-..|......++.+.|++++++... .-...|.++++....-|.-+...+.|+++.+ -| -..|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 44556677777777777777777777776654 1223455555555555655666666665554 12 23455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhc
Q 005136 286 VMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIE-KDVFISNALIDLYSKC 364 (712)
Q Consensus 286 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 364 (712)
.|...|.+.+.+++|.++|+.|.+. +......|...+..+.+.++-+.|..++...++.-.. .......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 5666666666666666666666542 2244455555566666666666666666555543211 1233334444445555
Q ss_pred CChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005136 365 GETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLL 444 (712)
Q Consensus 365 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 444 (712)
|+.+.++.+|+......|.....|+..++.-.+.|+.+.+ ..+|++...
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~v-------------------------------R~lfeRvi~ 1662 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYV-------------------------------RDLFERVIE 1662 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHH-------------------------------HHHHHHHHh
Confidence 6666666666655555554455555555555555555555 788888877
Q ss_pred CCCCCC
Q 005136 445 SGEIPN 450 (712)
Q Consensus 445 ~g~~p~ 450 (712)
.++.|-
T Consensus 1663 l~l~~k 1668 (1710)
T KOG1070|consen 1663 LKLSIK 1668 (1710)
T ss_pred cCCChh
Confidence 776654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.5e-05 Score=66.22 Aligned_cols=237 Identities=11% Similarity=0.026 Sum_probs=155.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCh
Q 005136 423 ISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDI 502 (712)
Q Consensus 423 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 502 (712)
++-+.-.|++..++..-....... -+...-..+.++|...|.+..... .+.... .|....+..+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 444556677776666555544331 233333344455655565443222 222222 34444444444444444444
Q ss_pred HHHH-HHhccCCCC----CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHh
Q 005136 503 ESSR-RVFDRMPDK----NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNS 577 (712)
Q Consensus 503 ~~A~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 577 (712)
++-. ++.+.+..+ +......-+..|+..|++++|++.+.... +......=+..+.+....+-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 233333322 22223333456889999999999987621 222233334456677889999999999
Q ss_pred cchhcCCCCchHHHHHHHHHhhh----cCChHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 005136 578 MEPIYNIKPNGRHYTCVVDMLSR----SGRLSEAEDFINSM--PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 578 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 651 (712)
|.+ --+..+.+.|+.++++ .++..+|.-+|+++ +..|++.+.+..+.++...|++++|+.+++.++..++
T Consensus 163 mq~----ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQ----IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHc----cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 972 2255677777777754 45799999999999 3688999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCchhHHH
Q 005136 652 EHPAGYVLLSNIYASAGRWIDAMN 675 (712)
Q Consensus 652 ~~~~~~~~l~~~~~~~g~~~eA~~ 675 (712)
++|+++..++-+-...|+-.++.+
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHH
Confidence 999999999999999999877655
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.6e-05 Score=80.48 Aligned_cols=135 Identities=10% Similarity=0.123 Sum_probs=93.5
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHH
Q 005136 516 NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTC 593 (712)
Q Consensus 516 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 593 (712)
++..+-.|.....+.|++++|..+++...+ +.|+. .....+...+.+.+.+++|+..+++.. ...| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 355566667777777777777777777777 56655 345566667777777777777777776 3356 5666677
Q ss_pred HHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 594 VVDMLSRSGRLSEAEDFINSMP-FEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
++.++.+.|++++|..+|+++. ..|+ ...+..+...+...|+.++|...|+++++...+-..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~ 223 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR 223 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence 7777777777777777777762 3333 666777777777777777777777777776544333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.7e-06 Score=80.07 Aligned_cols=121 Identities=15% Similarity=0.116 Sum_probs=97.9
Q ss_pred HHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhh
Q 005136 555 ILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKT 632 (712)
Q Consensus 555 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 632 (712)
...++..+...++++.|+++|+++.+. .|+ ....+++++...++-.+|.+++++. ...| +...+......+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445666666778888889988888733 344 4556788888888888999988887 3344 46666666666889
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 005136 633 YKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLM 680 (712)
Q Consensus 633 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 680 (712)
.++++.|..+++++.+..|++...|..|+.+|.+.|++++|+-.++.+
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999988764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-06 Score=52.02 Aligned_cols=32 Identities=41% Similarity=0.619 Sum_probs=22.4
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHhh
Q 005136 346 GIEKDVFISNALIDLYSKCGETKDGRLVFDSI 377 (712)
Q Consensus 346 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 377 (712)
|+.||..+|++|+++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777665
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.9e-06 Score=76.41 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=95.6
Q ss_pred CCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-hhcC--CHHHHHHHHHHHhccCCCCCchH
Q 005136 584 IKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGC-KTYK--NEQIAERAVKNLWKLAEEHPAGY 657 (712)
Q Consensus 584 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g--~~~~a~~~~~~~~~~~p~~~~~~ 657 (712)
-+| |...|..|+.+|...|+...|..-|.+. .+.| ++..+..+..++ ...| ...++..++++++.++|.|+.+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 367 8999999999999999999999999987 4444 466666666663 3333 56889999999999999999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhCCCccCCcccEEE
Q 005136 658 VLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVE 695 (712)
Q Consensus 658 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 695 (712)
..|+..+..+|++.+|...|+.|++..++..|..+.|+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 99999999999999999999999999888888766554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.1e-05 Score=66.67 Aligned_cols=115 Identities=16% Similarity=0.095 Sum_probs=73.7
Q ss_pred cCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHhhcCCHHH
Q 005136 565 SGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDS----NAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 565 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~ 638 (712)
.++...+...++.+..+++-.| .......++..+...|++++|...|+.. ...|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666667666777664432222 2334445667777777888887777776 222332 233445556777888888
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 005136 639 AERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLM 680 (712)
Q Consensus 639 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 680 (712)
|...++.. ...+-.+.++..+|.+|.+.|++++|+..|++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 88877653 223334667778888888888888888888764
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.4e-06 Score=51.58 Aligned_cols=32 Identities=44% Similarity=0.511 Sum_probs=16.2
Q ss_pred CCCCCccHHHHHHHHHHccCChHHHHHHHhhc
Q 005136 214 GFEKHVSVCNSLITLSLKMGEVDLARSVFDRM 245 (712)
Q Consensus 214 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 245 (712)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00044 Score=74.61 Aligned_cols=150 Identities=6% Similarity=0.044 Sum_probs=86.0
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 005136 283 SWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYS 362 (712)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 362 (712)
++-.+..+|-+.|+.+++..+++++.+.. +-|....+.+...++.. ++++|.+++...... +.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 45556666777777777777777777654 34556666676666666 777777776665543 55
Q ss_pred hcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 005136 363 KCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEM 442 (712)
Q Consensus 363 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 442 (712)
..+++..+..+|.++....+.+...+..+.+.....-...++ +.++-.+-..|-..++++++..+++..
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~-----------~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRL-----------VGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchh-----------HHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 556777777777777766655444444333333222112222 233444555566666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHH
Q 005136 443 LLSGEIPNKSTFSSVLCAS 461 (712)
Q Consensus 443 ~~~g~~p~~~~~~~ll~~~ 461 (712)
++.. +-|.....-++.+|
T Consensus 250 L~~~-~~n~~a~~~l~~~y 267 (906)
T PRK14720 250 LEHD-NKNNKAREELIRFY 267 (906)
T ss_pred HhcC-CcchhhHHHHHHHH
Confidence 6543 22333444444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00017 Score=63.48 Aligned_cols=186 Identities=13% Similarity=0.145 Sum_probs=134.3
Q ss_pred hcCChhHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCh
Q 005136 428 EHKQFDLVFAVFNEMLL---SG-EIPNKS-TFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDI 502 (712)
Q Consensus 428 ~~~~~~~a~~~~~~~~~---~g-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 502 (712)
...+.++..+++.++.. .| ..++.. .|..++-+....|..+-|...++.+.+.- +-+..+-..-.-.+...|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 34567888888887764 34 445554 45667777778888888998888887763 44444444444446677889
Q ss_pred HHHHHHhccCCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcc
Q 005136 503 ESSRRVFDRMPDKN---EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSME 579 (712)
Q Consensus 503 ~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 579 (712)
++|.++++.+.+.| ..++-.-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999887543 445666666677788888888888887775 56678889999999999999999999999887
Q ss_pred hhcCCCC-chHHHHHHHHHhhhcC---ChHHHHHHHHhC-CCCC
Q 005136 580 PIYNIKP-NGRHYTCVVDMLSRSG---RLSEAEDFINSM-PFEP 618 (712)
Q Consensus 580 ~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p 618 (712)
-+.| ++..+..+++.+.-.| +.+-|.++|.+. ...|
T Consensus 182 ---l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 ---LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred ---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 4567 6667777877765444 456677777776 5455
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.23 E-value=2e-05 Score=66.31 Aligned_cols=112 Identities=16% Similarity=0.244 Sum_probs=88.3
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-C
Q 005136 539 LFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-P 615 (712)
Q Consensus 539 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 615 (712)
.++++.. ..|+. .....+...+...|++++|.+.|+.+.. ..| +...+..++.++...|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 45544 4466677778888999999999988873 245 7788889999999999999999998887 4
Q ss_pred CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 616 FEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 616 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
..| +...+..+...+...|+++.|...+++++++.|+++.
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 444 4677777777888999999999999999999998765
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.4e-06 Score=73.69 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=44.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCCh
Q 005136 527 LAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRL 604 (712)
Q Consensus 527 ~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 604 (712)
+.+.+++.+|+..|.+.++ +.|+ .+.|..-..+|.+.|.++.|++-.+... .+.| ...+|..|+.+|...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCcH
Confidence 4445555555555555555 3432 2333344445555555555555554444 2344 234455555555555555
Q ss_pred HHHHHHHHhC-CCCCCHHHH
Q 005136 605 SEAEDFINSM-PFEPDSNAW 623 (712)
Q Consensus 605 ~~A~~~~~~~-~~~p~~~~~ 623 (712)
++|++.|++. .+.|+..+|
T Consensus 166 ~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHHHhhhccCCCcHHH
Confidence 5555555444 344444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0067 Score=58.56 Aligned_cols=86 Identities=17% Similarity=0.226 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHH----HHHHHHH--HhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHH
Q 005136 533 AKESINLFEEMEKTSITPNEL----TILSVLF--ACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSE 606 (712)
Q Consensus 533 ~~~A~~~~~~~~~~~~~p~~~----~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 606 (712)
..+-+++-.-+.+.|++|-.+ .-+.|.. .+...|++.++.-+-.-+. .+.|++.+|..++-++....++++
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHH
Confidence 344444445556677777443 2333333 3456789988887665555 568999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHH
Q 005136 607 AEDFINSMPFEPDSNAW 623 (712)
Q Consensus 607 A~~~~~~~~~~p~~~~~ 623 (712)
|..++.+++ |+..++
T Consensus 514 A~~~l~~LP--~n~~~~ 528 (549)
T PF07079_consen 514 AWEYLQKLP--PNERMR 528 (549)
T ss_pred HHHHHHhCC--CchhhH
Confidence 999999987 344443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.1e-06 Score=61.11 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC-CchhHHHHHHHHHhCC
Q 005136 619 DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAG-RWIDAMNVRKLMTEKG 684 (712)
Q Consensus 619 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~eA~~~~~~~~~~~ 684 (712)
++..|..+...+...|++++|+..++++++.+|+++.++..++.++...| ++++|++.+++.++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45678888888999999999999999999999999999999999999999 7999999999988754
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.8e-06 Score=60.44 Aligned_cols=60 Identities=20% Similarity=0.196 Sum_probs=53.6
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 626 LLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 626 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
+...+...|++++|+..++++++..|+++.++..++.++.+.|++++|+.+++++++..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 345678899999999999999999999999999999999999999999999999987654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.6e-05 Score=65.12 Aligned_cols=97 Identities=14% Similarity=0.061 Sum_probs=68.5
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC---CchHHHH
Q 005136 589 RHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH---PAGYVLL 660 (712)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 660 (712)
.++..++..+.+.|++++|.+.++.+ ...|+ ...+..+...+...|+++.|...++++....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34556667777777777777777776 22332 2345556666777888888888888888777775 4567778
Q ss_pred HHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 661 SNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 661 ~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
+.++.+.|++++|...++++++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 8888888888888888888877654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.8e-05 Score=75.31 Aligned_cols=124 Identities=13% Similarity=0.128 Sum_probs=104.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccC
Q 005136 488 LGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSG 566 (712)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 566 (712)
....|+..+...++++.|..+|+++.+.++.....++..+...++..+|++++.+.++. .| +...+..-...|.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34456667777889999999999999888888888888998899999999999998874 44 5556666677788999
Q ss_pred cHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCCC
Q 005136 567 LVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMPF 616 (712)
Q Consensus 567 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (712)
+++.|+.+.+++. ...| +..+|..|+.+|...|++++|+..++.++.
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999998 5578 677999999999999999999999998864
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.9e-06 Score=65.06 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=57.3
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHH
Q 005136 601 SGRLSEAEDFINSM-PFEP---DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNV 676 (712)
Q Consensus 601 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 676 (712)
.|++++|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....+|.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777777777776 2223 344555567778888888888888888 667777777888888889999999999888
Q ss_pred HHH
Q 005136 677 RKL 679 (712)
Q Consensus 677 ~~~ 679 (712)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0083 Score=57.95 Aligned_cols=188 Identities=16% Similarity=0.138 Sum_probs=109.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHhccCC--CCCcch-------HHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHH
Q 005136 487 FLGTALTDTYAKSGDIESSRRVFDRMP--DKNEIS-------WTVMVRGLAE----SGYAKESINLFEEMEKTSITPNEL 553 (712)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-------~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~ 553 (712)
..+..++....+.++...|.+.+.-+. +|+... -..+.+..+. .-+...=+.+|+..... ..|..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~--DiDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY--DIDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh--cccHH
Confidence 456666666777777777777766554 332221 1112222221 11223334555555553 23332
Q ss_pred -HHHHHHH---HhcccCc-HHHHHHHHHhcchhcCCCC-chHHHHHH----HHHhhhc---CChH---HHHHHHHhCCCC
Q 005136 554 -TILSVLF---ACSHSGL-VDKGLKYFNSMEPIYNIKP-NGRHYTCV----VDMLSRS---GRLS---EAEDFINSMPFE 617 (712)
Q Consensus 554 -~~~~l~~---~~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l----~~~~~~~---g~~~---~A~~~~~~~~~~ 617 (712)
....|+. -+.+.|. -++|+++++.+. .+.| |...-+.+ -..|... ..+. +-..++++.++.
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il---~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLIL---QFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 2222322 3445555 888999999887 3345 44333322 1222211 1122 223334444444
Q ss_pred C----CHHHHHHHHHH--HhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 005136 618 P----DSNAWASLLSG--CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLM 680 (712)
Q Consensus 618 p----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 680 (712)
| +...-+.+..+ +..+|++.++.-...=+.+..| +|.+|..+|.++....+++||.+++..+
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4 24445556666 5789999999988887788899 7999999999999999999999998754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.02 Score=60.28 Aligned_cols=212 Identities=16% Similarity=0.157 Sum_probs=112.1
Q ss_pred hccchhhhhhhHHHHHHHhCCCCcchhhhHHHH--HHhcCCChhHhHHHHhhcC---CCCcchHHHHHHHHHhcCChHHH
Q 005136 32 TSQNLVIQGRALHGHLIKTGIHKERYLTTRLLI--MYLGSRKSLEANEIVKDLN---GFDLVVHNCMINANIQWGNLEEA 106 (712)
Q Consensus 32 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 106 (712)
...+.+..|.+...++++.. |+.... ..+. ...+.|+.++|..+++... ..|..+...+-.+|.+.|..++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~~a-~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNALYA-KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcHHH-HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 45667778887777777764 232222 2222 3457777788877777652 23556777777777778888888
Q ss_pred HHHHhhCCC--CChhHHHHHHHHHHccCChHH----HHHHhhhCCCCCcccHHHHHHHHHhc-CCh---------hHHHH
Q 005136 107 QRLFDGMPE--RNEVSWTALISGFMKHGRVEE----SMWYFERNPFQNVISWTAAICGFVQN-GFS---------FEALK 170 (712)
Q Consensus 107 ~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~li~~~~~~-g~~---------~~A~~ 170 (712)
..+|++... |+......+..+|.|.+.+.+ |.+++...+..--..|+ +++...+. ... .-|.+
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHHH
Confidence 888877765 344444455566667666643 34444444433333333 23322221 111 22344
Q ss_pred HHHHHHHcC-CCCCHhhHHHHHHHHhcccchHHHHHHHH-HHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCC
Q 005136 171 LFLKLLESG-VKPNEVTFSSICKACAEINDFRLGLSVFG-LIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEK 247 (712)
Q Consensus 171 ~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 247 (712)
.++.+.+.+ ---+..-...-...+...|++++|..++. ...+.-..-+...-+.-+..+...+++.+..++..++..
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 444444433 11111222222334455666777777663 222322333344444555566666666666655555443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.9e-05 Score=60.71 Aligned_cols=95 Identities=16% Similarity=0.252 Sum_probs=78.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 005136 590 HYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASA 667 (712)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 667 (712)
.+..++..+...|++++|...+++. ...|+ ...+..+...+...|++++|...++++.+..|.++.++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 3556777888889999999998886 44444 456666777788889999999999999999999888999999999999
Q ss_pred CCchhHHHHHHHHHhCC
Q 005136 668 GRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 668 g~~~eA~~~~~~~~~~~ 684 (712)
|++++|...+++..+..
T Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 82 GKYEEALEAYEKALELD 98 (100)
T ss_pred HhHHHHHHHHHHHHccC
Confidence 99999999998887644
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.011 Score=60.21 Aligned_cols=206 Identities=13% Similarity=0.026 Sum_probs=131.2
Q ss_pred CCcchhhhHHHHHHhcCCChhHhHHHHhhcCC-CCcchHHHHH----------HHHHhcCChHHHHHHHhhCCCCChhHH
Q 005136 53 HKERYLTTRLLIMYLGSRKSLEANEIVKDLNG-FDLVVHNCMI----------NANIQWGNLEEAQRLFDGMPERNEVSW 121 (712)
Q Consensus 53 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~----------~~~~~~g~~~~A~~~~~~~~~~~~~~~ 121 (712)
.|.+..|..|.......-.++-|...|-+... +.+-.-..|- ..-+--|.+++|+++|-.+.++|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLA-- 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLA-- 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhh--
Confidence 35666676666655555555555555544311 2221111111 1122347888999988888877654
Q ss_pred HHHHHHHHccCChHHHHHHhhhCCCC-----CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 005136 122 TALISGFMKHGRVEESMWYFERNPFQ-----NVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAE 196 (712)
Q Consensus 122 ~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 196 (712)
+..+.+.|++-.+.+++...... -..+|+.+...++....|++|.+.|..-.. . ...+.++.+
T Consensus 767 ---ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~ecly~ 834 (1189)
T KOG2041|consen 767 ---IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIECLYR 834 (1189)
T ss_pred ---HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHHHHHH
Confidence 45667778888888888764322 235788888888888889998888876432 1 234566666
Q ss_pred ccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhC
Q 005136 197 INDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEM 276 (712)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 276 (712)
..++++-+.+... ++.+....-.+..++...|.-+.|.+.+-+...|. .-+..|...++|.+|.++-+..
T Consensus 835 le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 835 LELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 6666655554443 35666777778888888888888888776655443 3456677778888888887776
Q ss_pred CCCCce
Q 005136 277 PERNEV 282 (712)
Q Consensus 277 ~~~~~~ 282 (712)
.-|.+.
T Consensus 905 ~l~qv~ 910 (1189)
T KOG2041|consen 905 QLPQVQ 910 (1189)
T ss_pred cchhHH
Confidence 555443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.4e-05 Score=48.37 Aligned_cols=33 Identities=36% Similarity=0.675 Sum_probs=29.4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 005136 151 SWTAAICGFVQNGFSFEALKLFLKLLESGVKPN 183 (712)
Q Consensus 151 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 183 (712)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688899999999999999999999999888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-05 Score=48.03 Aligned_cols=33 Identities=33% Similarity=0.467 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 005136 150 ISWTAAICGFVQNGFSFEALKLFLKLLESGVKP 182 (712)
Q Consensus 150 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 182 (712)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 568888888888888888888888888888776
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.7e-05 Score=61.05 Aligned_cols=105 Identities=10% Similarity=0.104 Sum_probs=69.1
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 005136 554 TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD----SNAWASLL 627 (712)
Q Consensus 554 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 627 (712)
++..+...+...|++++|.+.|+.+.....-.| ....+..++.++.+.|++++|...++.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666777777777776663321111 2345666777888888888888888776 22333 45566666
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCCchHH
Q 005136 628 SGCKTYKNEQIAERAVKNLWKLAEEHPAGYV 658 (712)
Q Consensus 628 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 658 (712)
.++...|+.++|...++++++..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7777888888888888888888888765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.9e-05 Score=75.14 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=91.7
Q ss_pred HHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhc
Q 005136 557 SVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTY 633 (712)
Q Consensus 557 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 633 (712)
.-...+...|+++.|+..|+++. ...| +...+..++.+|.+.|++++|+..++++ ...|+ ...+..+..+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al---~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAI---DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 34556778899999999999998 3467 6788899999999999999999999988 55554 67788888889999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 005136 634 KNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASA 667 (712)
Q Consensus 634 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 667 (712)
|++++|+..++++++++|+++.+...+..+..+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999888877765544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00031 Score=59.56 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=75.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc--hHHHHHHHH
Q 005136 523 MVRGLAESGYAKESINLFEEMEKTSITPNE----LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN--GRHYTCVVD 596 (712)
Q Consensus 523 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~ 596 (712)
++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+... .-.|. ......|+.
T Consensus 18 ~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 18 ALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLAR 93 (145)
T ss_pred HHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHH
Confidence 33333 467777777777777774 2322 22334456677778888888888877743 21222 223445677
Q ss_pred HhhhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 005136 597 MLSRSGRLSEAEDFINSMPFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLW 647 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 647 (712)
++...|++++|+..++..... ..+..+......+...|++++|...|++++
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 777888888888888775322 224444555555778888888888877653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.7e-05 Score=65.53 Aligned_cols=99 Identities=15% Similarity=0.068 Sum_probs=75.3
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLS 661 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 661 (712)
....+..++..+...|++++|...+++. ...|+ ...+..+...+...|++++|...++++++..|+++..+..++
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3456677777888888888888888776 22222 356677777788889999999999999999998888888888
Q ss_pred HHHHhcCC--------------chhHHHHHHHHHhCCC
Q 005136 662 NIYASAGR--------------WIDAMNVRKLMTEKGL 685 (712)
Q Consensus 662 ~~~~~~g~--------------~~eA~~~~~~~~~~~~ 685 (712)
.++...|+ +++|++++++..+.++
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 88888777 5677777777766543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.4e-05 Score=57.17 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=54.3
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 628 SGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 628 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
..|.+.+++++|.++++++++.+|+++..+..+|.++.+.|++++|++.+++.++.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 45788999999999999999999999999999999999999999999999999987653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.1e-05 Score=58.13 Aligned_cols=56 Identities=13% Similarity=0.193 Sum_probs=48.4
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 631 KTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 631 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
...|++++|++.++++++.+|+++.+...|+.+|.+.|++++|.++++++....+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 46789999999999999999999999999999999999999999999888776543
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00085 Score=56.13 Aligned_cols=149 Identities=11% Similarity=0.081 Sum_probs=101.1
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHH
Q 005136 529 ESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEA 607 (712)
Q Consensus 529 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 607 (712)
+.=+++...+-..+-.+ ..|+...-..|..+....|++.+|...|++.. .|+-- |......++++....+++.+|
T Consensus 68 q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qal--sG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 68 QKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQAL--SGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh--ccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 33344444333333333 56766666777778888888888888888776 24443 677777788888888888888
Q ss_pred HHHHHhCC-CCC---CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 608 EDFINSMP-FEP---DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 608 ~~~~~~~~-~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
...++++. -.| ++.+...+...+...|+.+.|+..++.++.-.|+ +..-..++..+.++|+..||..-+..+-+
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 88888762 122 1333444556677788888888888888888887 66777778888888887777765555443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00013 Score=72.14 Aligned_cols=100 Identities=11% Similarity=0.117 Sum_probs=82.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhh
Q 005136 523 MVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSR 600 (712)
Q Consensus 523 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 600 (712)
....+...|++++|++.|+++++ ..|+ ...|..+..+|...|++++|+..++++. .+.| +...|..++.+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHH
Confidence 45667788999999999999998 4554 5677788889999999999999999998 3467 67889999999999
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 005136 601 SGRLSEAEDFINSM-PFEPDSNAWASLL 627 (712)
Q Consensus 601 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 627 (712)
.|++++|+..|++. ...|+.......+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999987 5566654444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.6e-05 Score=47.09 Aligned_cols=33 Identities=27% Similarity=0.578 Sum_probs=29.9
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 005136 283 SWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPN 315 (712)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 315 (712)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999999998887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.047 Score=56.43 Aligned_cols=338 Identities=13% Similarity=0.117 Sum_probs=197.7
Q ss_pred hCCCCCCHHHHHH-----HHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC---hHHHHHHHHhhhcC
Q 005136 309 RYSFKPNTSCFSI-----VLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGE---TKDGRLVFDSIVEK 380 (712)
Q Consensus 309 ~~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~ 380 (712)
.-|++.+..-|.. ++.-+...+.+..|+++-..+......- ..++......+.+..+ .+-+..+=+++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4466666655544 4455556677777777766654321111 5667777777766532 22233333333332
Q ss_pred CCCceeeHHHHHHHHhccCChhhHHHHhhcCCCC--------CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 005136 381 DVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKR--------NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKS 452 (712)
Q Consensus 381 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~ 452 (712)
..+..+|..+.+.--..|+.+-|..+++.-+.. +..-+...+.-..+.|+.+....++-.+... .+..
T Consensus 504 -~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s 579 (829)
T KOG2280|consen 504 -LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRS 579 (829)
T ss_pred -CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHH
Confidence 245667777777777888888888887765532 2334566667777778887777777666553 2222
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHh-ccC-----CCCCcchHHHHHHH
Q 005136 453 TFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVF-DRM-----PDKNEISWTVMVRG 526 (712)
Q Consensus 453 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~-----~~~~~~~~~~l~~~ 526 (712)
.|...+ .+...|..++.+..+..-. ..+-+.|-...+...+..+. +.. ...-..........
T Consensus 580 ~l~~~l------~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~ 647 (829)
T KOG2280|consen 580 SLFMTL------RNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANA 647 (829)
T ss_pred HHHHHH------HhchhhhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 232222 2334445555544432100 01111222222222211111 110 01112223333444
Q ss_pred HHHcCChH---HH-------HHHHHHHHH-cCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHH
Q 005136 527 LAESGYAK---ES-------INLFEEMEK-TSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVV 595 (712)
Q Consensus 527 ~~~~~~~~---~A-------~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 595 (712)
+.+..... +| +++.+.+.. .|..-..-+.+--+.-+...|+..+|.++-.+.. -||...|-.-+
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~ 722 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKL 722 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHH
Confidence 44443311 11 122222221 2333444556666677788899999999988887 78888998899
Q ss_pred HHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHH
Q 005136 596 DMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMN 675 (712)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 675 (712)
.+++..++|++-.++-++.+. +..|.-+..+|.+.|+.++|..++-++-.+. -...+|.+.|++.+|.+
T Consensus 723 ~aLa~~~kweeLekfAkskks---PIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 723 TALADIKKWEELEKFAKSKKS---PIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred HHHHhhhhHHHHHHHHhccCC---CCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHH
Confidence 999999999998888887652 4566778888999999999999887753322 57889999999999998
Q ss_pred HHHH
Q 005136 676 VRKL 679 (712)
Q Consensus 676 ~~~~ 679 (712)
..-+
T Consensus 792 ~A~~ 795 (829)
T KOG2280|consen 792 LAAE 795 (829)
T ss_pred HHHH
Confidence 7543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00016 Score=63.29 Aligned_cols=93 Identities=13% Similarity=-0.099 Sum_probs=75.5
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLS 661 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 661 (712)
....+..++..+...|++++|...+++. ...|+ ..++..+...+...|++++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 4566778888888999999999999887 33332 346788888899999999999999999999999999999999
Q ss_pred HHHH-------hcCCchhHHHHHHH
Q 005136 662 NIYA-------SAGRWIDAMNVRKL 679 (712)
Q Consensus 662 ~~~~-------~~g~~~eA~~~~~~ 679 (712)
.++. ..|++++|+..+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 9988 78888755555544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.7e-05 Score=68.99 Aligned_cols=110 Identities=15% Similarity=0.066 Sum_probs=94.1
Q ss_pred HHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCC
Q 005136 559 LFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKN 635 (712)
Q Consensus 559 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~ 635 (712)
..-..+.+++.+|+..|.+++ .+.| |...|..-+.+|.+.|.++.|++-.+.. .+.|. ...|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 445667899999999999998 6788 7888888999999999999999988887 66776 7889999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 005136 636 EQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWI 671 (712)
Q Consensus 636 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 671 (712)
+++|++.|+++++++|++......|-++-.+.+...
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999877667766655555544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00018 Score=59.71 Aligned_cols=100 Identities=17% Similarity=0.108 Sum_probs=83.1
Q ss_pred CCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 005136 583 NIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVL 659 (712)
Q Consensus 583 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 659 (712)
|+.+ ........+.-+...|++++|..+|+-+ ... -+..-|..+..+|...+++++|+..|..+..+.++||....+
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 4555 3444555666677899999999999877 223 346667888888999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHh
Q 005136 660 LSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 660 l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
.+.++...|+.++|+..|+..++
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999998877
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.7e-05 Score=46.02 Aligned_cols=33 Identities=24% Similarity=0.582 Sum_probs=26.9
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 005136 282 VSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKP 314 (712)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 314 (712)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 468888888888888888888888888888776
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.4e-05 Score=52.48 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=47.4
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 594 VVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
++..+.+.|++++|...|+++ ...|+ ...+..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 567778888888888888887 45564 66677777778888999999999999998888875
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0034 Score=59.74 Aligned_cols=266 Identities=8% Similarity=-0.036 Sum_probs=139.6
Q ss_pred HhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHH
Q 005136 326 LASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAK 405 (712)
Q Consensus 326 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 405 (712)
+.+..++..|+..+....+.... +..-|..-+..+...|++++|.--.+.-.+..+.........-+++...++..+|.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 33444555555555555555422 23334444445555566666655555544444333334444444444455555554
Q ss_pred HHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHH-HHHhccCchHHHHHHHHHHHHcCCC
Q 005136 406 ELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGE-IPNKSTFSSVL-CASASVASLEKGKDLHGKIIKLGFP 483 (712)
Q Consensus 406 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~ 483 (712)
+.++.- ..+ ....++..++....... +|.-.++..+- .++...|++++|..+-..+.+.. .
T Consensus 138 ~~~~~~-----~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~ 200 (486)
T KOG0550|consen 138 EKLKSK-----QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-A 200 (486)
T ss_pred HHhhhh-----hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-c
Confidence 444310 000 01111222222222211 13333333332 24456677777776666655532 1
Q ss_pred CchhhHHHHH--HHHHhcCChHHHHHHhccCCCCCcch---------------HHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005136 484 YDVFLGTALT--DTYAKSGDIESSRRVFDRMPDKNEIS---------------WTVMVRGLAESGYAKESINLFEEMEKT 546 (712)
Q Consensus 484 ~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~A~~~~~~~~~~ 546 (712)
.+ .+..++ .++.-.++.+.|...|++....++.. |..=..-..+.|++..|.+.|.+.+..
T Consensus 201 ~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 201 TN--AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI 278 (486)
T ss_pred ch--hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence 11 111122 22334567777777777776433321 222234456788888888888888762
Q ss_pred ---CCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 547 ---SITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 547 ---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
+..|+...|........+.|+..+|+.-.++.. .++| -...+..-+.++...++|++|.+-+++.
T Consensus 279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333456666667778888888888887776 3444 2344555566777788888888888876
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0016 Score=53.95 Aligned_cols=102 Identities=8% Similarity=-0.029 Sum_probs=68.3
Q ss_pred HhccCC-CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCC
Q 005136 508 VFDRMP-DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIK 585 (712)
Q Consensus 508 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 585 (712)
.+..+. +.+....-.+...+...|++++|.++|+-+.. +.|.. .-|..|..+|...|++++|+..|.... .+.
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~ 99 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIK 99 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcC
Confidence 333444 34444445556667777888888888877776 55644 445566666677778888888877776 345
Q ss_pred C-chHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 586 P-NGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 586 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
| |+..+-.++.++...|+.+.|.+.|+..
T Consensus 100 ~ddp~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 100 IDAPQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5 6677777777888888887777777754
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00011 Score=55.39 Aligned_cols=80 Identities=16% Similarity=0.276 Sum_probs=52.8
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHH
Q 005136 530 SGYAKESINLFEEMEKTSIT-PNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEA 607 (712)
Q Consensus 530 ~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 607 (712)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|+.+++. . ...| +......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 57788888888888874321 2334455577788888888888888877 2 2233 344555667888888888888
Q ss_pred HHHHHh
Q 005136 608 EDFINS 613 (712)
Q Consensus 608 ~~~~~~ 613 (712)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887764
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.003 Score=60.52 Aligned_cols=168 Identities=8% Similarity=0.172 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHH
Q 005136 419 WSAIISGYLEHKQFDLVFAVFNEMLLS----GEIPN-KSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALT 493 (712)
Q Consensus 419 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 493 (712)
|......|-..+++++|...|.+.... +-+.. ...|......+ +..++++|...+.+. +
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A---------------~ 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKA---------------I 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHH---------------H
Confidence 344566666677777777777665331 11110 11222222222 222444444444443 2
Q ss_pred HHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHc-CChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHhcccC
Q 005136 494 DTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAES-GYAKESINLFEEMEKT----SITPN--ELTILSVLFACSHSG 566 (712)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g 566 (712)
..|...|++..|-..+.. +...|... |++++|++.|++..+. | .+. ...+..+...+.+.|
T Consensus 102 ~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC
Confidence 345555555555444333 34445555 5666666666655432 1 111 123344455555666
Q ss_pred cHHHHHHHHHhcchhcC----CCCchH-HHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 567 LVDKGLKYFNSMEPIYN----IKPNGR-HYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 567 ~~~~a~~~~~~~~~~~~----~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
++++|.++|+++....- .+.+.. .+...+-++...|+...|...+++.
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666665542210 111111 1222333444556666666666554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.65 E-value=3.4e-05 Score=45.64 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=31.0
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCCchhHHH
Q 005136 643 VKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMN 675 (712)
Q Consensus 643 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 675 (712)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999963
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0011 Score=68.45 Aligned_cols=66 Identities=17% Similarity=0.071 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 619 DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 619 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
++..+..+.......|++++|...++++++++| +...|..+|+++...|+.++|.+.+++....++
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 345555554455566777778777777777777 366777777777777887778777777766543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0007 Score=64.13 Aligned_cols=279 Identities=14% Similarity=0.059 Sum_probs=165.1
Q ss_pred HHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC---CCcccHHHHHHHHHhcCChhHH
Q 005136 359 DLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK---RNDVSWSAIISGYLEHKQFDLV 435 (712)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 435 (712)
..+.+..++..|+..+....+..+.+..-|..-...+...++++++.--.+.-.+ ...........++...++..+|
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 3455667778888888888888877777777777777777888777554433332 2233444445555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC-CchhhHHH-HHHHHHhcCChHHHHHHhccCC
Q 005136 436 FAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFP-YDVFLGTA-LTDTYAKSGDIESSRRVFDRMP 513 (712)
Q Consensus 436 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~ 513 (712)
.+.++.- ..+ ....+...++.+...... |.-..+.. -..++...|+.++|..+--.+.
T Consensus 137 ~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il 196 (486)
T KOG0550|consen 137 EEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL 196 (486)
T ss_pred HHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH
Confidence 5555411 101 011122222222222211 22222222 2345667788888888777666
Q ss_pred CCCcch-HHHHHH--HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH---HHH----------HhcccCcHHHHHHHHHh
Q 005136 514 DKNEIS-WTVMVR--GLAESGYAKESINLFEEMEKTSITPNELTILS---VLF----------ACSHSGLVDKGLKYFNS 577 (712)
Q Consensus 514 ~~~~~~-~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~---l~~----------~~~~~g~~~~a~~~~~~ 577 (712)
+.|... +..+++ ++...++.+.|...|++.+. +.|+...-.. ... -..+.|++..|.+.|.+
T Consensus 197 kld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yte 274 (486)
T KOG0550|consen 197 KLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTE 274 (486)
T ss_pred hcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHH
Confidence 555443 222332 34456788889999988887 5566543221 122 22367888899988888
Q ss_pred cchhcCCCC-----chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 005136 578 MEPIYNIKP-----NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLA 650 (712)
Q Consensus 578 ~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 650 (712)
.. ++.| +...|...+....+.|+..+|+.-.+.. .+.|. ...+..-..++...++|++|.+-++++.+..
T Consensus 275 al---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 275 AL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77 4444 3455666677778889999988888776 43333 2233334445677888999999999988876
Q ss_pred CCCCchHHHHHHH
Q 005136 651 EEHPAGYVLLSNI 663 (712)
Q Consensus 651 p~~~~~~~~l~~~ 663 (712)
.+ +.....|..+
T Consensus 352 ~s-~e~r~~l~~A 363 (486)
T KOG0550|consen 352 KD-CEIRRTLREA 363 (486)
T ss_pred cc-cchHHHHHHH
Confidence 55 4444444433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0022 Score=66.44 Aligned_cols=140 Identities=14% Similarity=0.093 Sum_probs=95.8
Q ss_pred CCCcchHHHHHHHHHHc--C---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhccc--------CcHHHHHHHHHhcc
Q 005136 514 DKNEISWTVMVRGLAES--G---YAKESINLFEEMEKTSITPNE-LTILSVLFACSHS--------GLVDKGLKYFNSME 579 (712)
Q Consensus 514 ~~~~~~~~~l~~~~~~~--~---~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~a~~~~~~~~ 579 (712)
..+...|...+.+.... + +...|+.+|++.++ ..|+. ..+..+..++... ++...+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34555666666554322 2 35678888888888 56765 3343333332211 22344455554433
Q ss_pred hhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 580 PIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 580 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
.......++..+..++-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.+|.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 11112335677888887778889999999999998 66788888888888899999999999999999999999885
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0012 Score=57.93 Aligned_cols=127 Identities=17% Similarity=0.211 Sum_probs=86.4
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHH
Q 005136 518 ISWTVMVRGLAESGYAKESINLFEEMEKTSITPN--ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCV 594 (712)
Q Consensus 518 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 594 (712)
..+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+++..+ ..| +...+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l 112 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHH
Confidence 3466677777888888888888888876433222 35677777888888899999888888873 355 56667777
Q ss_pred HHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 005136 595 VDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAG 668 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 668 (712)
+.++...|+...+..-++.. ...+++|.+.+++++..+|++ +..++..+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 78887777766655333221 123677888999999888886 444444444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.08 Score=50.37 Aligned_cols=211 Identities=14% Similarity=0.149 Sum_probs=123.6
Q ss_pred hccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC-----CCCcch--HHHHHHHH---HHcC
Q 005136 462 ASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP-----DKNEIS--WTVMVRGL---AESG 531 (712)
Q Consensus 462 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~--~~~l~~~~---~~~~ 531 (712)
.+.|+.+.|..+-...-..- +.-.-....+++..+..|+++.|+++++.-. ++++.- --.|+.+- .-..
T Consensus 165 qr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 34455555555444443321 2223344455555666666666666665433 222221 11122111 1122
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHH
Q 005136 532 YAKESINLFEEMEKTSITPNELT-ILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDF 610 (712)
Q Consensus 532 ~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 610 (712)
+...|...-.+..+ +.|+..- -..-..++.+.|+..++-.+++.+- ...|.+..... ..+.+.|+. ++.-
T Consensus 244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~l--Y~~ar~gdt--a~dR 314 (531)
T COG3898 244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIALL--YVRARSGDT--ALDR 314 (531)
T ss_pred ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHHHH--HHHhcCCCc--HHHH
Confidence 45555555555555 6777633 3445567888899999999998886 23555554322 223455553 3333
Q ss_pred HHhC----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc-CCchhHHHHHHHHHhC
Q 005136 611 INSM----PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASA-GRWIDAMNVRKLMTEK 683 (712)
Q Consensus 611 ~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~eA~~~~~~~~~~ 683 (712)
+++. ..+|+ ......+..+....|++..|..-.+.+....|. ..+|..|+.+-... |+..+++.++-+..+.
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 3332 23444 555666677777889999999888888888887 56888888887755 9999999998877764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0012 Score=52.77 Aligned_cols=91 Identities=15% Similarity=0.006 Sum_probs=66.5
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC---CCchHHHHHHH
Q 005136 592 TCVVDMLSRSGRLSEAEDFINSM---PFEPD--SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE---HPAGYVLLSNI 663 (712)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~ 663 (712)
..++.++-..|+.++|+.+|++. +.... ...+..+...+...|+.++|..++++.....|+ +......++.+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 34566777788888888888775 22221 345566677788888888888888888887787 66777778888
Q ss_pred HHhcCCchhHHHHHHHHHh
Q 005136 664 YASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 664 ~~~~g~~~eA~~~~~~~~~ 682 (712)
+...|+.+||++.+-..+.
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 8888888888887765443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00094 Score=51.04 Aligned_cols=80 Identities=18% Similarity=0.163 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHhhHHHHHHHHhccc--------chHHHHHHHHHHHHhCCCCCccHH
Q 005136 152 WTAAICGFVQNGFSFEALKLFLKLLESGV-KPNEVTFSSICKACAEIN--------DFRLGLSVFGLIFKAGFEKHVSVC 222 (712)
Q Consensus 152 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 222 (712)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34566677778999999999999999999 899999999999877643 245678899999999999999999
Q ss_pred HHHHHHHHc
Q 005136 223 NSLITLSLK 231 (712)
Q Consensus 223 ~~li~~~~~ 231 (712)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.021 Score=54.82 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=52.5
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHcCCCC-----cH-HHHHHHHHHHHhcCChHHHHHHHHhhhcCCCC--c---ee
Q 005136 318 CFSIVLSALASLKALRSGMHVHAHVLKIGIEK-----DV-FISNALIDLYSKCGETKDGRLVFDSIVEKDVA--H---VV 386 (712)
Q Consensus 318 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~---~~ 386 (712)
++..+...+.+.|++++|.++++++....... +. ..+...+-++...|+...|...|++....++. + ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 34455556666777777777777766543221 11 12233344666678888888888888766542 1 22
Q ss_pred eHHHHHHHHhc--cCChhhHHHHhhcCCCCCcc
Q 005136 387 SWNSMIGGYGL--NGQMEEAKELFDNMPKRNDV 417 (712)
Q Consensus 387 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~ 417 (712)
....|+.++-. ...++.++.-|+.+.+-|..
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 33445555433 23455565555555554443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00063 Score=52.85 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=45.8
Q ss_pred HHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC
Q 005136 559 LFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKN 635 (712)
Q Consensus 559 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 635 (712)
...+...|++++|...++++.+ ..| +...+..++.++...|++++|.+.+++. ...| +...+..+...+...|+
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALE---LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 3334444555555555554441 122 2344455555555556666666655554 2222 22344555555666666
Q ss_pred HHHHHHHHHHHhccCC
Q 005136 636 EQIAERAVKNLWKLAE 651 (712)
Q Consensus 636 ~~~a~~~~~~~~~~~p 651 (712)
++.|...+.++.+..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 6666666666665554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00012 Score=42.65 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=22.8
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 005136 151 SWTAAICGFVQNGFSFEALKLFLKLLESGV 180 (712)
Q Consensus 151 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 180 (712)
+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777788877777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.12 Score=52.99 Aligned_cols=62 Identities=13% Similarity=0.062 Sum_probs=33.9
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcc
Q 005136 348 EKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDV 417 (712)
Q Consensus 348 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 417 (712)
+.+....-.+.+++.+.|.-++|.+.|-+.... ..-+..|...+++.+|.++-++..-|.+.
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p--------kaAv~tCv~LnQW~~avelaq~~~l~qv~ 910 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP--------KAAVHTCVELNQWGEAVELAQRFQLPQVQ 910 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccCc--------HHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 344455555666666666666666555433211 23345556666666666666665544433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.085 Score=50.21 Aligned_cols=212 Identities=13% Similarity=0.098 Sum_probs=141.1
Q ss_pred ccCchHHHHHHHHHHHHcCCCCchhh--HHHHHHHHHhcCChHHHHHHhccCCCC---CcchHHHHHHHHHHcCChHHHH
Q 005136 463 SVASLEKGKDLHGKIIKLGFPYDVFL--GTALTDTYAKSGDIESSRRVFDRMPDK---NEISWTVMVRGLAESGYAKESI 537 (712)
Q Consensus 463 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 537 (712)
-.|+++.|.+-|+.|.+. |.... ...|.---.+.|..+.|.++-++.... -...+...+...+..|+|+.|+
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHH
Confidence 457777777777776541 11111 122222335778899998888776632 3456888999999999999999
Q ss_pred HHHHHHHHcC-CCCCHHH--HHHHHHHh--c-ccCcHHHHHHHHHhcchhcCCCCchH-HHHHHHHHhhhcCChHHHHHH
Q 005136 538 NLFEEMEKTS-ITPNELT--ILSVLFAC--S-HSGLVDKGLKYFNSMEPIYNIKPNGR-HYTCVVDMLSRSGRLSEAEDF 610 (712)
Q Consensus 538 ~~~~~~~~~~-~~p~~~~--~~~l~~~~--~-~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~ 610 (712)
++++.-.+.. +.++..- -..|+.+- . -..+...|...-.+.. .+.|+.. .-..-..+|.+.|+..++-.+
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhH
Confidence 9999876643 3444422 22233221 1 1234556666555544 5677643 334456789999999999999
Q ss_pred HHhC-CCCCCHHHHHHHHHHHhhcCCHHHH-HHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 611 INSM-PFEPDSNAWASLLSGCKTYKNEQIA-ERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 611 ~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
++.+ +..|.+..+.... +.+.|+.... .+-.+++..+.|+|.+.....+.+-...|.+..|+.--+....
T Consensus 286 lE~aWK~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 286 LETAWKAEPHPDIALLYV--RARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred HHHHHhcCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 9998 6678887765443 4467765333 2234555668999999999999999999999988876665544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00059 Score=63.62 Aligned_cols=86 Identities=16% Similarity=0.008 Sum_probs=48.3
Q ss_pred hhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHHhcCCc
Q 005136 599 SRSGRLSEAEDFINSM-PFEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH---PAGYVLLSNIYASAGRW 670 (712)
Q Consensus 599 ~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 670 (712)
.+.|++++|...|+.. ...|+ +..+..+...|...|++++|...|+++++..|++ +.++..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 4445666666555554 22232 2344445555666666666666666666665553 34445556666666666
Q ss_pred hhHHHHHHHHHhCC
Q 005136 671 IDAMNVRKLMTEKG 684 (712)
Q Consensus 671 ~eA~~~~~~~~~~~ 684 (712)
++|+.+++++++.-
T Consensus 234 ~~A~~~~~~vi~~y 247 (263)
T PRK10803 234 AKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHHC
Confidence 66666666665543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0004 Score=65.53 Aligned_cols=257 Identities=13% Similarity=0.050 Sum_probs=149.5
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCchHHHHHHHHHHH--H--cCCC-CchhhHHHHHHH
Q 005136 425 GYLEHKQFDLVFAVFNEMLLSGEIPNK----STFSSVLCASASVASLEKGKDLHGKII--K--LGFP-YDVFLGTALTDT 495 (712)
Q Consensus 425 ~~~~~~~~~~a~~~~~~~~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~l~~~ 495 (712)
-+|+.|+......+|+..++.| ..|. ..|..+-.+|.-.+++++|.++...=. . .|-. -.......|...
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3566666666677777777766 2232 345555666667777777776654311 0 1110 011222233333
Q ss_pred HHhcCChHHHHHHhccCCC---------CCcchHHHHHHHHHHcCC--------------------hHHHHHHHHHHHH-
Q 005136 496 YAKSGDIESSRRVFDRMPD---------KNEISWTVMVRGLAESGY--------------------AKESINLFEEMEK- 545 (712)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~- 545 (712)
+--.|.+++|...-.+-.. .....+..+...|...|+ .+.|.+.|.+-.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555443222110 011223334444443331 2234444433221
Q ss_pred ---cCCC-CCHHHHHHHHHHhcccCcHHHHHHHHHhc---chhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC---
Q 005136 546 ---TSIT-PNELTILSVLFACSHSGLVDKGLKYFNSM---EPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM--- 614 (712)
Q Consensus 546 ---~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 614 (712)
.|-. .-...|..|...|.-.|+++.|+..-+.- .+.+|-.- -...+..+++++.-.|+++.|.+.|+..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1111 11234666666777789999998765532 22333333 3557788999999999999999998864
Q ss_pred ----C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC------CCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 615 ----P-FEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLA------EEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 615 ----~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+ .......--++.+.|.-..+++.|+.+..+=+.+. .....++.+|+.++...|..++|+.+.+.-++
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1 12234455567777777888999999888765532 22456899999999999999999999887665
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0092 Score=55.35 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=47.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHHhcCCchhHHHHHHHHH
Q 005136 626 LLSGCKTYKNEQIAERAVKNLWKLAEEH---PAGYVLLSNIYASAGRWIDAMNVRKLMT 681 (712)
Q Consensus 626 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 681 (712)
+...|.+.|++..|..-++.+++..|+. ++++..++.+|...|..++|.++...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3444788999999999999999998885 4678888999999999999999877553
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00017 Score=51.70 Aligned_cols=48 Identities=17% Similarity=0.328 Sum_probs=24.5
Q ss_pred ccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 564 HSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 564 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
..|++++|+++|+++... .| +......++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555555555422 33 4445555555555555555555555555
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0032 Score=52.82 Aligned_cols=102 Identities=19% Similarity=0.266 Sum_probs=91.1
Q ss_pred cCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC--CCch
Q 005136 582 YNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM---PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE--HPAG 656 (712)
Q Consensus 582 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~ 656 (712)
....|+...-..|+.++.+.|+..||...|+.. ....|......+..+....++...|...++++.+..|. +|..
T Consensus 83 ~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 83 LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 345788888889999999999999999999987 34667888889999999999999999999999998887 6888
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 657 YVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 657 ~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
...++..|...|++.+|...|+..++-
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 999999999999999999999988774
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0002 Score=41.61 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=23.3
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005136 283 SWSVMIARYNQSGYPEEAFRLFRQMTRYSF 312 (712)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 312 (712)
+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0046 Score=58.96 Aligned_cols=133 Identities=11% Similarity=0.145 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFA-CSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDM 597 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 597 (712)
+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 56777777777777888888888887532 2233444433333 33356667788888887744 23366777777888
Q ss_pred hhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 598 LSRSGRLSEAEDFINSM-PFEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 598 ~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
+.+.|+.+.|..+|++. ..-|. ...|...+..-.+.|+.+....+.+++.+..|++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 88888888888888876 22333 34777788777888888888888888888877743
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0026 Score=48.69 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccC--------ChhhHHHHHHHHHHcCCCCcHHHHH
Q 005136 285 SVMIARYNQSGYPEEAFRLFRQMTRYSF-KPNTSCFSIVLSALASLK--------ALRSGMHVHAHVLKIGIEKDVFISN 355 (712)
Q Consensus 285 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 355 (712)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +....+.+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 999999999999988643 3456678899999999999999999
Q ss_pred HHHHHHHh
Q 005136 356 ALIDLYSK 363 (712)
Q Consensus 356 ~l~~~~~~ 363 (712)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00038 Score=50.06 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=47.7
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcC-CHHHHHHHHHHHhccCC
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYK-NEQIAERAVKNLWKLAE 651 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 651 (712)
++..|..++..+...|++++|+..|++. ...|+ ...+..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3556777777888888888888887776 44454 556666666777777 68888888888888776
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.023 Score=57.40 Aligned_cols=265 Identities=13% Similarity=0.141 Sum_probs=133.9
Q ss_pred HHHHHHHHHHccCChHHHHHHhhhCC-----------CCCcccHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHhh
Q 005136 120 SWTALISGFMKHGRVEESMWYFERNP-----------FQNVISWTAAICGFVQNGF--SFEALKLFLKLLESGVKPNEVT 186 (712)
Q Consensus 120 ~~~~l~~~~~~~g~~~~a~~~~~~~~-----------~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~ 186 (712)
.+.+-+..|...|.+++|.+.---.. .-+...++..-.+|.+-++ +-+.+.-+++|+++|-.|+..
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i- 636 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL- 636 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH-
Confidence 34444556777787777765421110 1122334445555654433 344555567777888777765
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCH
Q 005136 187 FSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDL 266 (712)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 266 (712)
.+...|+-.|.+.+|-++|.+ .|.. |..+.+|-....+|.|.+++.. |.-
T Consensus 637 --LlA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~-------------------g~~ 686 (1081)
T KOG1538|consen 637 --LLADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGS-------------------GDP 686 (1081)
T ss_pred --HHHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhc-------------------CCh
Confidence 345566777788887777653 2211 2334444444555555554432 211
Q ss_pred HHHHHHHhhCCC--CCceeHHHHHHHHHhcCChhHHHHHHHH------HHhCCC---CCCHHHHHHHHHHHhccCChhhH
Q 005136 267 GEARRIFDEMPE--RNEVSWSVMIARYNQSGYPEEAFRLFRQ------MTRYSF---KPNTSCFSIVLSALASLKALRSG 335 (712)
Q Consensus 267 ~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~------m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a 335 (712)
++-..+.++-.+ .++.-=......+...|+.++|..+.-+ +.+.+- ..+..+...+...+.+...+..|
T Consensus 687 ~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 687 KEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchH
Confidence 111111111000 0000001122333444555555443211 111111 12233444444444555666666
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCC
Q 005136 336 MHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRN 415 (712)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 415 (712)
.++|..|-+. ..+++.....+++++|..+-++..+.- ...|-...+-++...++++|
T Consensus 767 aeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEA----------- 823 (1081)
T KOG1538|consen 767 AEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEA----------- 823 (1081)
T ss_pred HHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHH-----------
Confidence 6776665432 345666777777777777766655443 34444555556666666666
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 005136 416 DVSWSAIISGYLEHKQFDLVFAVFNEMLLS 445 (712)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 445 (712)
-.+|.+.|+-.+|..+++.+...
T Consensus 824 -------qkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 824 -------QKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred -------HHHHHHhcchHHHHHHHHHhhhh
Confidence 34556677777777777776554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00037 Score=44.42 Aligned_cols=42 Identities=21% Similarity=0.412 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 005136 621 NAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSN 662 (712)
Q Consensus 621 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 662 (712)
.++..+...|.+.|++++|+++++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456778888999999999999999999999999999888874
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0012 Score=64.60 Aligned_cols=63 Identities=10% Similarity=-0.091 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCch---HHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 620 SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAG---YVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 620 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
...+..+..+|...|++++|+..++++++++|+++.+ |+.++.+|..+|+.++|++.+++.++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444422 44444444444444444444444444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0066 Score=48.60 Aligned_cols=93 Identities=14% Similarity=0.168 Sum_probs=64.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHh
Q 005136 522 VMVRGLAESGYAKESINLFEEMEKTSITPNE--LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDML 598 (712)
Q Consensus 522 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 598 (712)
.+..++-..|+.++|+.+|++....|+.... ..+..+..++...|++++|+.+|++....+.-.+ +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3456677888888999999888888766553 4566777788888888888888888774422111 223333455667
Q ss_pred hhcCChHHHHHHHHhC
Q 005136 599 SRSGRLSEAEDFINSM 614 (712)
Q Consensus 599 ~~~g~~~~A~~~~~~~ 614 (712)
...|+.++|++.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 7888888888776543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.22 Score=48.14 Aligned_cols=108 Identities=12% Similarity=0.174 Sum_probs=80.1
Q ss_pred cHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhH
Q 005136 220 SVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEE 299 (712)
Q Consensus 220 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 299 (712)
.+.+..|.-+...|+...|.++-.+..-|+..-|...+.+++..++|++-..+... ++++.-|..++..|.+.|+..+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHH
Confidence 45556667777888888888888888778888888888888888888888876554 5677888888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHH
Q 005136 300 AFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVH 339 (712)
Q Consensus 300 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 339 (712)
|..+...+ ++ ..-+..|.+.|++.+|.+.-
T Consensus 256 A~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 256 ASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHH
Confidence 88877662 11 33445556667776665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.14 Score=53.90 Aligned_cols=174 Identities=13% Similarity=0.132 Sum_probs=89.3
Q ss_pred HHHHHHHccCChHHHHHHhhhCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc
Q 005136 123 ALISGFMKHGRVEESMWYFERNPFQNV---ISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEIND 199 (712)
Q Consensus 123 ~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 199 (712)
.-+..+.+...++.|..+-.....+.. .......+-+.+.|++++|.+.|-+-+.. +.|. .++.-+....+
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHH
Confidence 345555666666666666544322111 12223333445667777776666655432 2222 33444455555
Q ss_pred hHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcc-hHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 005136 200 FRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVV-SWTVILDVFIEMGDLGEARRIFDEMPE 278 (712)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 278 (712)
...--.+++.+.+.|+. +...-..|+.+|.+.++.+...++.+...+.... -....+..+.+.+-+++|..+-.....
T Consensus 413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~ 491 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK 491 (933)
T ss_pred HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc
Confidence 55555666666666643 2333355667777777777766666655421111 233445555555555555555444333
Q ss_pred CCceeHHHHHHHHHhcCChhHHHHHHHHH
Q 005136 279 RNEVSWSVMIARYNQSGYPEEAFRLFRQM 307 (712)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 307 (712)
+...... .+-..+++++|++.+..|
T Consensus 492 -he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 492 -HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred -CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 2222222 233456677777777654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.019 Score=57.96 Aligned_cols=202 Identities=16% Similarity=0.164 Sum_probs=101.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCC
Q 005136 436 FAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDK 515 (712)
Q Consensus 436 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 515 (712)
..-++++.+.|-.|+.... ...|+-.|++.+|.++|.+- |.. +.-+++|.....++.|.+++......
T Consensus 620 i~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~ 687 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDPK 687 (1081)
T ss_pred HHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCChH
Confidence 5566778888877876543 34566778888887777543 211 12334444444555555554443311
Q ss_pred --------------CcchHHHHHHHHHHcCChHHHHHHHHH------HHHcCCCC---CHHHHHHHHHHhcccCcHHHHH
Q 005136 516 --------------NEISWTVMVRGLAESGYAKESINLFEE------MEKTSITP---NELTILSVLFACSHSGLVDKGL 572 (712)
Q Consensus 516 --------------~~~~~~~l~~~~~~~~~~~~A~~~~~~------~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~ 572 (712)
+..--.+....+...|+.++|+.+.-+ +.+-+-+. +..+...+...+.+...+..|-
T Consensus 688 eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 688 EKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHH
Confidence 111112233444555555555544321 11111111 2223333333344455555666
Q ss_pred HHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 005136 573 KYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMP-FEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 573 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 651 (712)
++|..+- | ...+++.+...++|++|..+-++.+ ..|+. +.....-+....++++|.+.
T Consensus 768 eIF~k~g-------D---~ksiVqlHve~~~W~eAFalAe~hPe~~~dV--y~pyaqwLAE~DrFeEAqkA--------- 826 (1081)
T KOG1538|consen 768 EIFLKMG-------D---LKSLVQLHVETQRWDEAFALAEKHPEFKDDV--YMPYAQWLAENDRFEEAQKA--------- 826 (1081)
T ss_pred HHHHHhc-------c---HHHHhhheeecccchHhHhhhhhCccccccc--cchHHHHhhhhhhHHHHHHH---------
Confidence 6666554 1 1245566666777777777766663 23331 22222333445555555553
Q ss_pred CCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 652 EHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 652 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+.++|+..||..+++++-.
T Consensus 827 ------------fhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 827 ------------FHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ------------HHHhcchHHHHHHHHHhhh
Confidence 4455667777777766543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0057 Score=57.15 Aligned_cols=101 Identities=10% Similarity=0.048 Sum_probs=68.4
Q ss_pred HHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 005136 555 ILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD----SNAWASLLS 628 (712)
Q Consensus 555 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 628 (712)
|...+....+.|++++|+..|+.+...+.-.+ .+..+..++.+|...|++++|...|+++ ...|+ ...+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44434333455777777777777764421111 1356677888888888888888888877 22232 555556666
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 629 GCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 629 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
.+...|+.+.|...++++++..|++..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 677889999999999999999998653
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.012 Score=51.49 Aligned_cols=92 Identities=13% Similarity=0.165 Sum_probs=50.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 005136 151 SWTAAICGFVQNGFSFEALKLFLKLLESGVKP--NEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITL 228 (712)
Q Consensus 151 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 228 (712)
.|..+...+...|++++|+..|++.......| ...++..+..++...|++++|...++...... +.....+..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 44555555666666666666666665542222 12355666666666777777777776666542 2223344444444
Q ss_pred HH-------ccCChHHHHHHHh
Q 005136 229 SL-------KMGEVDLARSVFD 243 (712)
Q Consensus 229 ~~-------~~~~~~~a~~~~~ 243 (712)
+. ..|+++.|...++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHH
Confidence 44 4555554444433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.009 Score=59.29 Aligned_cols=121 Identities=13% Similarity=0.080 Sum_probs=85.3
Q ss_pred CCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc--CCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC----CCcc
Q 005136 445 SGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKL--GFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD----KNEI 518 (712)
Q Consensus 445 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~ 518 (712)
.+.+.+...+..++..+....+++.+..++.+.+.. ....-..+..++++.|...|..+.+..+++.=.. ||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 445666777777777777777788888887777754 3333344556788888888888888887776553 6777
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHS 565 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 565 (712)
+++.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888887777766666666665555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.44 Score=49.73 Aligned_cols=341 Identities=14% Similarity=0.090 Sum_probs=165.4
Q ss_pred hCCCCCccHHH-----HHHHHHHccCChHHHHHHHhhcCCCC---cchHHHHHHHHHhcC---CHHHHHHHHhhCCC--C
Q 005136 213 AGFEKHVSVCN-----SLITLSLKMGEVDLARSVFDRMEKRD---VVSWTVILDVFIEMG---DLGEARRIFDEMPE--R 279 (712)
Q Consensus 213 ~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~--~ 279 (712)
.|++.+..-|. .+++-+...+.+..|.++.+.+..|. ...|......+.+.. +-+-+..+-+++.. .
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 35565554443 45666777788888888888777665 345555555555542 23334444444444 3
Q ss_pred CceeHHHHHHHHHhcCChhHHHHHHHHHHhCCC----CCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHH
Q 005136 280 NEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSF----KPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISN 355 (712)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 355 (712)
...+|..+.......|+.+-|..+++.=...+. -.+..-+...+.-+...|+.+....++-.+...- +...+
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l- 581 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL- 581 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH-
Confidence 456777777777788888888887754221110 0111223334444444555555544444443320 11111
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHH
Q 005136 356 ALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLV 435 (712)
Q Consensus 356 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 435 (712)
.....+...|..+|.+..+..- -..+- .+-..++..++..-|..
T Consensus 582 -----~~~l~~~p~a~~lY~~~~r~~~-----~~~l~-d~y~q~dn~~~~a~~~~------------------------- 625 (829)
T KOG2280|consen 582 -----FMTLRNQPLALSLYRQFMRHQD-----RATLY-DFYNQDDNHQALASFHL------------------------- 625 (829)
T ss_pred -----HHHHHhchhhhHHHHHHHHhhc-----hhhhh-hhhhcccchhhhhhhhh-------------------------
Confidence 1111223334444444332110 00000 11111111111000000
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHH----------HHHHHHHHH-cCCCCchhhHHHHHHHHHhcCChHH
Q 005136 436 FAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKG----------KDLHGKIIK-LGFPYDVFLGTALTDTYAKSGDIES 504 (712)
Q Consensus 436 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a----------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~ 504 (712)
...|..-...|..|+.. ....+|++.....-. ..+.+.+.. .|.....-+.+.-+.-+...|+..+
T Consensus 626 q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~ 702 (829)
T KOG2280|consen 626 QASYAAETIEGRIPALK---TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKR 702 (829)
T ss_pred hhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHH
Confidence 00000000112223222 222233332221111 111112221 1222333333444444566778888
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCC
Q 005136 505 SRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNI 584 (712)
Q Consensus 505 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 584 (712)
|.++-.+..-||-..|-.-+.+++..++|++-.++-+.. -+..-|.-.+.+|.+.|+.++|.+++-++. +.
T Consensus 703 a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l 773 (829)
T KOG2280|consen 703 AEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYLPFVEACLKQGNKDEAKKYIPRVG---GL 773 (829)
T ss_pred HHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCchhHHHHHHhcccHHHHhhhhhccC---Ch
Confidence 888888877777777777777778878777655544332 124456667777788888888877776654 11
Q ss_pred CCchHHHHHHHHHhhhcCChHHHHHHHH
Q 005136 585 KPNGRHYTCVVDMLSRSGRLSEAEDFIN 612 (712)
Q Consensus 585 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 612 (712)
. -.+.+|.+.|++.+|.++--
T Consensus 774 ~-------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 774 Q-------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred H-------HHHHHHHHhccHHHHHHHHH
Confidence 1 45667777777777766543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0085 Score=59.44 Aligned_cols=123 Identities=16% Similarity=0.102 Sum_probs=78.4
Q ss_pred CCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHc--CCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC-Cceee
Q 005136 311 SFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKI--GIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDV-AHVVS 387 (712)
Q Consensus 311 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 387 (712)
+.+.+...+..++..+....+++.+..++...... ....-..+..++++.|.+.|..+.+..++..=...|+ ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556666677777777777777777777776655 2222234445777777777777777777766666665 66666
Q ss_pred HHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 005136 388 WNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASV 464 (712)
Q Consensus 388 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~ 464 (712)
++.++..+.+.|++..| .++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A-------------------------------~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSA-------------------------------AKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHH-------------------------------HHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666 66666666666666666666666555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.058 Score=50.06 Aligned_cols=75 Identities=11% Similarity=-0.102 Sum_probs=40.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh--hHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 005136 154 AAICGFVQNGFSFEALKLFLKLLESGVKPNEV--TFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITL 228 (712)
Q Consensus 154 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 228 (712)
.....+.+.|++++|.+.|+.+...-..+... ....++.++.+.++++.|...++..++..+......+...+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 33444556677777777777776642221111 1134456666777777777777777766543333333333333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0016 Score=47.44 Aligned_cols=65 Identities=14% Similarity=0.228 Sum_probs=48.0
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 005136 595 VDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVL 659 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 659 (712)
..+|.+.+++++|.++++++ ...|+ ...+.....++...|++++|.+.++++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 35677888888888888887 44454 5556666667888888888888888888888887655443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.016 Score=52.28 Aligned_cols=153 Identities=13% Similarity=0.095 Sum_probs=82.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhh
Q 005136 523 MVRGLAESGYAKESINLFEEMEKTSIT-P-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLS 599 (712)
Q Consensus 523 l~~~~~~~~~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 599 (712)
....+...|++.+|++.|+++...... | -......++.++.+.|+++.|...+++..+.+.-.|. ...+..++.++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344455666666666666666653111 1 1123445555666666666666666666544433332 122222333222
Q ss_pred h-----------cCChHHHHHHHHhC----CCCCCHH---------------HHHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 005136 600 R-----------SGRLSEAEDFINSM----PFEPDSN---------------AWASLLSGCKTYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 600 ~-----------~g~~~~A~~~~~~~----~~~p~~~---------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 649 (712)
. .+...+|...|+.+ +..+-.. .-..+...|.+.|.+..|..-++.+++.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 1 11233455554444 2221110 0112344578999999999999999999
Q ss_pred CCCCC---chHHHHHHHHHhcCCchhHHH
Q 005136 650 AEEHP---AGYVLLSNIYASAGRWIDAMN 675 (712)
Q Consensus 650 ~p~~~---~~~~~l~~~~~~~g~~~eA~~ 675 (712)
.|+.+ .++..++.+|.+.|..+.|..
T Consensus 171 yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 171 YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 99964 567788889999998885543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0011 Score=49.06 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhcc---CC-C---CCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 621 NAWASLLSGCKTYKNEQIAERAVKNLWKL---AE-E---HPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 621 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p-~---~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
.++..+...|...|++++|+..+++++++ .+ + -..++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34566666677777777777777777653 12 2 245788889999999999999999888764
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.42 Score=46.28 Aligned_cols=106 Identities=19% Similarity=0.191 Sum_probs=66.5
Q ss_pred eHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 005136 387 SWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVAS 466 (712)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~ 466 (712)
+.+..+.-+...|+...|.++-.+..-|+...|...+.+++..++|++-..+-. . +-++.-|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~----s--kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAK----S--KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHh----C--CCCCCChHHHHHHHHHCCC
Confidence 334445555556666666666666666666667777777777777665454322 1 1233667777777777777
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 005136 467 LEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRV 508 (712)
Q Consensus 467 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 508 (712)
..+|..++.++ .+..-+.+|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 77777776652 114556777888888777665
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.1 Score=46.87 Aligned_cols=165 Identities=11% Similarity=0.077 Sum_probs=100.2
Q ss_pred eHHHHHHHHhccCChhhHHHHhhcCCCC----------CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005136 387 SWNSMIGGYGLNGQMEEAKELFDNMPKR----------NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSS 456 (712)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ 456 (712)
.|+.+.+.+.-...+++-+..++.-..| -....+.++..+.-.|.+.-....+++.++...+.++.....
T Consensus 138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSG 217 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHH
Confidence 3455555554444444444444433322 123455666677777788888888888888766667777777
Q ss_pred HHHHHhccCchHHHHHHHHHHHHcCCCCchh-----hHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHH
Q 005136 457 VLCASASVASLEKGKDLHGKIIKLGFPYDVF-----LGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLA 528 (712)
Q Consensus 457 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 528 (712)
+.+.-...||.+.|..+++...+..-..+.. +.......|.-++++.+|...+.++.. .++...|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 7777778888888888888776543233322 222333345556677777777776663 34444455555555
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHH
Q 005136 529 ESGYAKESINLFEEMEKTSITPNEL 553 (712)
Q Consensus 529 ~~~~~~~A~~~~~~~~~~~~~p~~~ 553 (712)
-.|+..+|++.++.|.+ ..|...
T Consensus 298 Ylg~l~DAiK~~e~~~~--~~P~~~ 320 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQ--QDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHHhc--cCCccc
Confidence 66777778887777777 344443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0067 Score=58.06 Aligned_cols=96 Identities=11% Similarity=0.015 Sum_probs=81.4
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-PF-EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
...+..++.+|.+.+++.+|+...++. .. .++...+..-..+|...|+++.|...++++++++|+|..+...|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 456778899999999999999999887 33 4567777778888999999999999999999999999999999998887
Q ss_pred hcCCchhH-HHHHHHHHhC
Q 005136 666 SAGRWIDA-MNVRKLMTEK 683 (712)
Q Consensus 666 ~~g~~~eA-~~~~~~~~~~ 683 (712)
+...+++. .+.|.+|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 77665555 7889999764
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.015 Score=57.28 Aligned_cols=143 Identities=9% Similarity=0.095 Sum_probs=90.0
Q ss_pred ChHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHhcc---------cCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhh
Q 005136 532 YAKESINLFEEMEK-TSITPNE-LTILSVLFACSH---------SGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLS 599 (712)
Q Consensus 532 ~~~~A~~~~~~~~~-~~~~p~~-~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 599 (712)
..+.|+.+|.+... ..+.|+. ..|..+..++.. ..+..+|.+.-++.. .+.| |+.....++.++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHH
Confidence 34567778888772 1256654 445555554432 123445555555555 4566 6777777777777
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH--HHhcCCchhHHH
Q 005136 600 RSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNI--YASAGRWIDAMN 675 (712)
Q Consensus 600 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~eA~~ 675 (712)
-.++++.|..+|++. ...|+ ...|......+.-.|+.++|.+.++++++++|....+-..-.++ |+..+ .++|+.
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 777788888888877 45666 44455555556678888888888888888888765554444444 44444 567777
Q ss_pred HHH
Q 005136 676 VRK 678 (712)
Q Consensus 676 ~~~ 678 (712)
++-
T Consensus 429 ~~~ 431 (458)
T PRK11906 429 LYY 431 (458)
T ss_pred HHh
Confidence 654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0059 Score=58.42 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=74.1
Q ss_pred HHHhhhcCChHHHHHHHHhC--------CC---------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchH
Q 005136 595 VDMLSRSGRLSEAEDFINSM--------PF---------EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGY 657 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~--------~~---------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 657 (712)
+..|.+.|++..|...|++. .. ..-...+.++..+|.+.+++..|++...++++++|+|.-++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 45566667766666666653 01 11234566778888999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 658 VLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 658 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
+.-|.+|...|.++.|+..|+++++..+.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999986543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0096 Score=51.98 Aligned_cols=89 Identities=11% Similarity=0.097 Sum_probs=66.5
Q ss_pred CCCcccHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc----------------cchHHHH
Q 005136 146 FQNVISWTAAICGFVQ-----NGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEI----------------NDFRLGL 204 (712)
Q Consensus 146 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~----------------~~~~~a~ 204 (712)
.++..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|++.+-+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4555666666666643 466666777788888888888888888888876542 2356688
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHccCC
Q 005136 205 SVFGLIFKAGFEKHVSVCNSLITLSLKMGE 234 (712)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 234 (712)
+++++|...|+-||..++..++..+.+.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 899999999999999999999988866554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0095 Score=56.84 Aligned_cols=129 Identities=12% Similarity=0.040 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhh-cCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSR-SGRLSEAEDFINSM--PFEPDSNAWASLLSG 629 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 629 (712)
.+|..++....+.+..+.|..+|.++.+... .+...|...+..-.+ .++.+.|.++|+.. ....+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3577888888888899999999999983322 245566666666445 56666699999987 345567888888888
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 630 CKTYKNEQIAERAVKNLWKLAEEHP---AGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
+...|+.+.|..++++++..-|... .+|..++..-.+.|+.+....+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999998876644 58889999999999999999999998874
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.033 Score=50.27 Aligned_cols=129 Identities=15% Similarity=0.188 Sum_probs=89.2
Q ss_pred HHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC----CCCCCHH-HHHHHHH
Q 005136 555 ILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM----PFEPDSN-AWASLLS 628 (712)
Q Consensus 555 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~-~~~~l~~ 628 (712)
+-.....+...|++.+|++.|+.+...+...| .......++.++.+.|++++|...+++. +..|... .+-.+..
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 34445567788999999999999997755555 4566778899999999999999999886 4444422 2211121
Q ss_pred HH-----------hhcCCHHHHHHHHHHHhccCCCCCchH-----------------HHHHHHHHhcCCchhHHHHHHHH
Q 005136 629 GC-----------KTYKNEQIAERAVKNLWKLAEEHPAGY-----------------VLLSNIYASAGRWIDAMNVRKLM 680 (712)
Q Consensus 629 ~~-----------~~~g~~~~a~~~~~~~~~~~p~~~~~~-----------------~~l~~~~~~~g~~~eA~~~~~~~ 680 (712)
++ ...+...+|...++..++..|+++.+- ...+..|.+.|++..|+.-++.+
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v 167 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV 167 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 21 123345688999999999999976532 34577799999999999999998
Q ss_pred HhC
Q 005136 681 TEK 683 (712)
Q Consensus 681 ~~~ 683 (712)
++.
T Consensus 168 ~~~ 170 (203)
T PF13525_consen 168 IEN 170 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.15 Score=49.75 Aligned_cols=161 Identities=14% Similarity=0.111 Sum_probs=94.3
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCC-------CcchHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005136 490 TALTDTYAKSGDIESSRRVFDRMPDK-------NEISWTVMVRGLAE---SGYAKESINLFEEMEKTSITPNELTILSVL 559 (712)
Q Consensus 490 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 559 (712)
..++-.|....+++...++++.+... ...+-...+-++.+ .|+.++|+.++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34444566666666666666666532 11122223344455 677788888877755555566666766666
Q ss_pred HHhcc---------cCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChH----HHHHHH---HhC-----C--C
Q 005136 560 FACSH---------SGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLS----EAEDFI---NSM-----P--F 616 (712)
Q Consensus 560 ~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~-----~--~ 616 (712)
..|-. ....++|+..|.+.- .+.|+..+--.++-.+...|... +..++- ..+ . .
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 54431 234677888887665 44565544444444444444322 222222 111 1 1
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 005136 617 EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 617 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
..+--.+.+++.++.-.|+.++|.+.+++++++.|+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2344555778888888999999999999999988764
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.005 Score=58.45 Aligned_cols=127 Identities=9% Similarity=0.001 Sum_probs=81.2
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHH----cCCC-CchhhHHHHHHHHHhcCChHHHHHHhccCC-------CCCc--c
Q 005136 453 TFSSVLCASASVASLEKGKDLHGKIIK----LGFP-YDVFLGTALTDTYAKSGDIESSRRVFDRMP-------DKNE--I 518 (712)
Q Consensus 453 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~--~ 518 (712)
.|..+-..|.-.|+++.|....+.-.. .|-. .....+..|..++.-.|+++.|.+.|+... .+.+ .
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344455555566788888776654332 2211 123455667778888888888888887543 2222 2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHhcccCcHHHHHHHHHhcc
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEK----TS-ITPNELTILSVLFACSHSGLVDKGLKYFNSME 579 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 579 (712)
+..+|.+.|.-..+++.|+..+.+-.. .+ ..-....+.+|..++...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455677777777888888887765332 11 22344678888888888888888887776544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.029 Score=51.83 Aligned_cols=103 Identities=12% Similarity=0.018 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcC---ChHHHHHHHHhC-CCCCCHHH-
Q 005136 549 TPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSG---RLSEAEDFINSM-PFEPDSNA- 622 (712)
Q Consensus 549 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p~~~~- 622 (712)
+-|...|..|..+|...|+.+.|...|.+.. .+.| |+..+..++.++.... ...++..+|+++ ...|+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~---rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNAL---RLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 3356789999999999999999999998887 3455 6777777777765432 466788899887 55666444
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 623 WASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 623 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
...+...+..+|++.+|...++++++..|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 44444558999999999999999999877754
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.014 Score=53.19 Aligned_cols=88 Identities=18% Similarity=0.107 Sum_probs=59.5
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHHhcC
Q 005136 597 MLSRSGRLSEAEDFINSM-PFEP----DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH---PAGYVLLSNIYASAG 668 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g 668 (712)
-+.+.|++.+|...|... ..-| .+..+..|..++...|+++.|...|..+.+-.|++ |+.+..|+.+..+.|
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence 344666677777776654 1112 13444456667777788888888777777766664 466777777788888
Q ss_pred CchhHHHHHHHHHhCC
Q 005136 669 RWIDAMNVRKLMTEKG 684 (712)
Q Consensus 669 ~~~eA~~~~~~~~~~~ 684 (712)
+.++|...|++++++=
T Consensus 230 ~~d~A~atl~qv~k~Y 245 (262)
T COG1729 230 NTDEACATLQQVIKRY 245 (262)
T ss_pred CHHHHHHHHHHHHHHC
Confidence 8888888888777653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.038 Score=45.18 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc---hHHHH
Q 005136 589 RHYTCVVDMLSRSGRLSEAEDFINSM----PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA---GYVLL 660 (712)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l 660 (712)
..+..-+....+.|++++|.+.|+.+ +..| ....-..++.+|...|++++|...+++-++++|.++. +++..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 33444555666888888888888887 2222 2455566777888899999999999999998888754 56666
Q ss_pred HHHHHhcCC---------------chhHHHHHHHHHhCC
Q 005136 661 SNIYASAGR---------------WIDAMNVRKLMTEKG 684 (712)
Q Consensus 661 ~~~~~~~g~---------------~~eA~~~~~~~~~~~ 684 (712)
|.++.++.. ..+|..-|+++++.=
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 666666655 667777777777643
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.005 Score=52.38 Aligned_cols=69 Identities=22% Similarity=0.203 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh-----CCCccCCc
Q 005136 622 AWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE-----KGLRKSGG 690 (712)
Q Consensus 622 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-----~~~~~~~~ 690 (712)
....++..+...|++++|...+++++..+|-+-.++..|+.+|.+.|+..+|+++++++.+ -|++|++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 4455666778899999999999999999999999999999999999999999999998753 47776653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.18 Score=40.00 Aligned_cols=141 Identities=18% Similarity=0.181 Sum_probs=83.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHH
Q 005136 527 LAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSE 606 (712)
Q Consensus 527 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 606 (712)
+.-.|..++..+++.+.... .+..-++.++--....-+-+...+.++.+-.-+.+.| ......++.+|...|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~-C~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK-CGNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh-hcchHHHHHHHHHhcc---
Confidence 45678888888888888763 2233333333333333344555566665543222222 1122334444444443
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 607 AEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 607 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
........+.....+|+.+...+++..+.+....+|+++..++.+|.+.|+..+|-+++.+.=++|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33444556666778999999999999998765567999999999999999999999999999998875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.02 Score=50.05 Aligned_cols=88 Identities=10% Similarity=0.281 Sum_probs=61.0
Q ss_pred CCCceeHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----------------ChhhHH
Q 005136 278 ERNEVSWSVMIARYNQ-----SGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLK----------------ALRSGM 336 (712)
Q Consensus 278 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a~ 336 (712)
.++-.+|..++..|.+ .|..+=....++.|.+.|+.-|..+|+.|+..+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4566666666666654 4677778888889999999999999999998876522 233456
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 005136 337 HVHAHVLKIGIEKDVFISNALIDLYSKCG 365 (712)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 365 (712)
+++++|...|+-||..++..+++.+.+.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 66666666666666666666666665544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.081 Score=52.36 Aligned_cols=143 Identities=12% Similarity=0.104 Sum_probs=89.7
Q ss_pred ChHHHHHHhccCC---CCC---cchHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc
Q 005136 501 DIESSRRVFDRMP---DKN---EISWTVMVRGLAES---------GYAKESINLFEEMEKTSITPNELTILSVLFACSHS 565 (712)
Q Consensus 501 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 565 (712)
..+.|..+|.+.. +.| ...|..+..++... ....+|.++.++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3566777888776 434 33455555444322 23446677777777732 33556666677777777
Q ss_pred CcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCChHHHHHHHHh-CCCCCCHHH---HHHHHHHHhhcCCHHHHH
Q 005136 566 GLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRLSEAEDFINS-MPFEPDSNA---WASLLSGCKTYKNEQIAE 640 (712)
Q Consensus 566 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~---~~~l~~~~~~~g~~~~a~ 640 (712)
++.+.|...|++.. .+.|| ...+...+..+.-.|+.++|.+.+++ +...|.... ....+..|. ..-.+.|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhH
Confidence 77888888888887 56774 66777777777888888888888888 466665322 222232344 44466666
Q ss_pred HHHHHHhc
Q 005136 641 RAVKNLWK 648 (712)
Q Consensus 641 ~~~~~~~~ 648 (712)
.++-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 66655433
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.53 Score=42.77 Aligned_cols=164 Identities=18% Similarity=0.201 Sum_probs=95.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHH-HHHHHHHhh--
Q 005136 525 RGLAESGYAKESINLFEEMEKTSI-TP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRH-YTCVVDMLS-- 599 (712)
Q Consensus 525 ~~~~~~~~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~-- 599 (712)
..-.+.|++++|.+.|+.+..... .| ...+...++.++.+.++++.|+..+++....+.-+||..- +...+.++.
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~ 121 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc
Confidence 344566677777777776665321 11 2244555566666777777777777776655555555431 111111111
Q ss_pred ---hcCChHHHHHHHHhC-------C---CCCCHHHH------------HHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 600 ---RSGRLSEAEDFINSM-------P---FEPDSNAW------------ASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 600 ---~~g~~~~A~~~~~~~-------~---~~p~~~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
...+...+...+..+ + -.||...- ..+...|.+.|.+..|..-++.+++..|+.+
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~ 201 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTS 201 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccccc
Confidence 122233333333222 1 12332111 2344557889999999999999999887754
Q ss_pred ---chHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCC
Q 005136 655 ---AGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSG 689 (712)
Q Consensus 655 ---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~ 689 (712)
+++..+..+|.+.|..++|...- ++++.+.++++
T Consensus 202 ~~~eaL~~l~eaY~~lgl~~~a~~~~-~vl~~N~p~s~ 238 (254)
T COG4105 202 AVREALARLEEAYYALGLTDEAKKTA-KVLGANYPDSQ 238 (254)
T ss_pred chHHHHHHHHHHHHHhCChHHHHHHH-HHHHhcCCCCc
Confidence 56667777899999999998874 45566655554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.079 Score=47.50 Aligned_cols=134 Identities=11% Similarity=0.035 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhc----CCCCchHHHHHH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIY----NIKPNGRHYTCV 594 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~l 594 (712)
+-+.++..+.-.|.+.-...++.+.++..-+.+......|.+.-.+.||.+.|..+|++..+.. ++.-+.......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666666777777778888888885444455667777777888888888888888665322 223333344455
Q ss_pred HHHhhhcCChHHHHHHHHhCCC-CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 595 VDMLSRSGRLSEAEDFINSMPF-EP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
...|.-.+++.+|...+.++.. .| ++...+.-.-+..-.|+...|.+..+.+++..|.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 5566677777777777777633 22 2333333333333467778888888888887777
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.51 E-value=1.2 Score=45.58 Aligned_cols=180 Identities=14% Similarity=0.091 Sum_probs=120.9
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHhccCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-H
Q 005136 485 DVFLGTALTDTYAKSGDIESSRRVFDRMPDK---NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVL-F 560 (712)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~ 560 (712)
....+...+..-.+.|+.+.+.-.|++..-| -...|-..+.-....|+.+-|..++....+-. .|+......+- .
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHH
Confidence 3456667777777889999999888887754 23356666666666688888888877766542 23322222222 2
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCChHHHH---HHHHhC-C--CCCC--HHHHHHHHHH-H
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRLSEAE---DFINSM-P--FEPD--SNAWASLLSG-C 630 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~--~~p~--~~~~~~l~~~-~ 630 (712)
.+...|+...|..+++.+.+. + |+ ...-..-+....+.|..+.+. .++... + ..+. ...+...... +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 244578999999999999844 3 64 333334455667888888888 455444 1 1222 2222333333 5
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 005136 631 KTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAG 668 (712)
Q Consensus 631 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 668 (712)
...++.+.|..++.++.+..|++...|..+.......+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 56889999999999999999999999999998887766
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.086 Score=48.55 Aligned_cols=120 Identities=9% Similarity=0.103 Sum_probs=80.3
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHhhcCCH
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWAS---LLSGCKTYKNE 636 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~ 636 (712)
.....|+...|...|+..... .| +......++.+|...|+.+.|..++..++.+-....+.. -+..+.+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345667777788777777632 44 556667788888888888888888888864433333322 22233333333
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 637 QIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 637 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
.+... +++-...+|+|...-..|+..+...|+.++|.+.+=.+++++
T Consensus 220 ~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 220 PEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33333 333455688888889999999999999999998877777653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.45 E-value=1 Score=44.15 Aligned_cols=140 Identities=13% Similarity=0.139 Sum_probs=80.6
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 005136 416 DVSWSAIISGYLEHKQFDLVFAVFNEMLLSG-EIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTD 494 (712)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 494 (712)
..+|...++...+....+.|..+|-+..+.| +.++...+.+++.-++ .|++..|..+|+.=... ++.+.......+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 3456666666666677777777777777776 4566666666665443 45666666666543332 1222223334444
Q ss_pred HHHhcCChHHHHHHhccCCC---CC--cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005136 495 TYAKSGDIESSRRVFDRMPD---KN--EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVL 559 (712)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~~---~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 559 (712)
.+.+.++-+.|..+|+...+ .+ ...|..++.--..-|+...+..+=+++.+ +.|...+.....
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~ 542 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFT 542 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHH
Confidence 55566777777777775442 12 33566666666666666666666666666 445444433333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.021 Score=51.95 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=62.0
Q ss_pred cccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHhhcCCH
Q 005136 563 SHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM----PFEPD-SNAWASLLSGCKTYKNE 636 (712)
Q Consensus 563 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~ 636 (712)
.+.|++..|...|....+.+--.+ ....+..|+.++...|++++|...|..+ +..|. +..+..+..+..+.|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 344556666666666654322222 3445666788888888888887777665 22332 56667777777788888
Q ss_pred HHHHHHHHHHhccCCCCCch
Q 005136 637 QIAERAVKNLWKLAEEHPAG 656 (712)
Q Consensus 637 ~~a~~~~~~~~~~~p~~~~~ 656 (712)
++|...++++.+..|+.+.+
T Consensus 232 d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 232 DEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHHHHHHCCCCHHH
Confidence 88888888888888886543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.59 Score=45.74 Aligned_cols=165 Identities=12% Similarity=0.042 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CC-CHHHHHHHHHHhcc---cCcHHHHHHHHHhcchhcCCCCchHHHH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSI--TP-NELTILSVLFACSH---SGLVDKGLKYFNSMEPIYNIKPNGRHYT 592 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 592 (712)
+...++-+|....+++..+++++.+..... .+ ....-.....|+.+ .|+.++|++++..+.. ..-.+++.++.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChHHHH
Confidence 344566679999999999999999987411 11 12222344556666 8999999999998542 24566888998
Q ss_pred HHHHHhhh---------cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCC-HH---HHHHHH----HHHhcc----C
Q 005136 593 CVVDMLSR---------SGRLSEAEDFINSM-PFEPDSNAWASLLSGCKTYKN-EQ---IAERAV----KNLWKL----A 650 (712)
Q Consensus 593 ~l~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~-~~---~a~~~~----~~~~~~----~ 650 (712)
.+++.|-. ....++|...|.+. ..+|+...-.+++-.+...|. .+ +..++. ..+.+. .
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 88887742 22478899999887 666775444444444333443 22 222222 111111 2
Q ss_pred CCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 651 EEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 651 p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
-.+-+.+.+++.+..-.|++++|.+..++|.+..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2356777899999999999999999999998753
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.84 Score=42.51 Aligned_cols=193 Identities=17% Similarity=0.171 Sum_probs=104.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHhccCCC-----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 005136 487 FLGTALTDTYAKSGDIESSRRVFDRMPD-----KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLF- 560 (712)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~- 560 (712)
.........+...+.+..+...+..... .....+......+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 3444444555555555555555544331 222334444455555566666666666665532222 111122222
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCC----chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHhhc
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKP----NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD--SNAWASLLSGCKTY 633 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~ 633 (712)
.+...|+++.|...+++... ..| ....+......+...++.++|...+.+. ...+. ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 55666666666666666641 222 2233333334455566677777666665 22222 45555555556666
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 634 KNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 634 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
++++.+...+..+....|.....+..++..+...|.++++...+.+..+.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67777777777777776665555666666666556667777666666554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.32 E-value=1.2 Score=43.64 Aligned_cols=127 Identities=13% Similarity=0.147 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC--CceeeHHHHHHHHhccCChhhHHHHhhcCCC--CCccc-HHHHHHH
Q 005136 351 VFISNALIDLYSKCGETKDGRLVFDSIVEKDV--AHVVSWNSMIGGYGLNGQMEEAKELFDNMPK--RNDVS-WSAIISG 425 (712)
Q Consensus 351 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~-~~~l~~~ 425 (712)
..+|..+++.-.+..-++.|+.+|-+..+.+. +++-.+++++.-++ .|+..-|..+|+--.. +|... -+..+..
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34455555555555556666666666655553 34555555555444 3445555555554332 23322 2334455
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 005136 426 YLEHKQFDLVFAVFNEMLLSGEIPN--KSTFSSVLCASASVASLEKGKDLHGKIIK 479 (712)
Q Consensus 426 ~~~~~~~~~a~~~~~~~~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 479 (712)
+...++-..|..+|+....+ +..+ ...|..+|.--..-|++..+..+-+.+..
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 55556666666666643332 1112 34566666666666777666666666554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.29 E-value=1.6 Score=44.71 Aligned_cols=122 Identities=12% Similarity=0.022 Sum_probs=54.7
Q ss_pred ceeeHHHHHHHHhccCChhhHHHHhhcCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005136 384 HVVSWNSMIGGYGLNGQMEEAKELFDNMPKRN---DVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCA 460 (712)
Q Consensus 384 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~ 460 (712)
+...|...+.--...|+.+.+.-++++..-|- ...|-..+.-....|+.+.|..++....+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34456666666666666666666665554431 122333333333335555555555544433222222221111122
Q ss_pred HhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHH
Q 005136 461 SASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSR 506 (712)
Q Consensus 461 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 506 (712)
+-..|+...|..+++.+...- +.-...-..-+....+.|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhh
Confidence 334456666666666655543 212222222333344455555554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0061 Score=45.02 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-----CCC---CC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-----PFE---PD-SNAWASLLSGCKTYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 649 (712)
..+++.++.+|...|++++|++.+++. ... |+ ..++..+..++...|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345666777777777777777776654 011 11 344566666677777777777777777653
|
... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.093 Score=42.95 Aligned_cols=116 Identities=15% Similarity=0.154 Sum_probs=57.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhc
Q 005136 524 VRGLAESGYAKESINLFEEMEKTSIT--PNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRS 601 (712)
Q Consensus 524 ~~~~~~~~~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 601 (712)
.....+.|++++|++.|+.+...--. -....-..++.+|.+.+++++|...+++.++.+-.+|++ .|.....++..-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 34455666666776666666654110 012344555666666666666666666666332233321 122222222221
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCch
Q 005136 602 GRLSEAEDFINSM-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAG 656 (712)
Q Consensus 602 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 656 (712)
...+ ..+..+ ... ...+....|...++++++..|+++.+
T Consensus 96 ~~~~---~~~~~~~~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 96 EQDE---GSLQSFFRSD-------------RDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHhh---hHHhhhcccc-------------cCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 1111 111111 111 11233567888899999999997643
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.055 Score=45.35 Aligned_cols=92 Identities=8% Similarity=-0.003 Sum_probs=60.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhh
Q 005136 523 MVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSR 600 (712)
Q Consensus 523 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 600 (712)
...-+...|++++|..+|.-+.- ..|. ..-+..|..++...+++++|+..|..... +.+ |+..+-..+.+|..
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~---l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT---LLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cccCCCCccchHHHHHHH
Confidence 34445677888888888877766 3343 33445566666667888888888776651 222 44555567788888
Q ss_pred cCChHHHHHHHHhCCCCCC
Q 005136 601 SGRLSEAEDFINSMPFEPD 619 (712)
Q Consensus 601 ~g~~~~A~~~~~~~~~~p~ 619 (712)
.|+.+.|+..|+.....|.
T Consensus 118 l~~~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 118 MRKAAKARQCFELVNERTE 136 (165)
T ss_pred hCCHHHHHHHHHHHHhCcc
Confidence 8888888888877644454
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.82 Score=40.90 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHhcc----CCCCCc
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSMP-------FEPDS-NAWASLLSGCKTYKNEQIAERAVKNLWKL----AEEHPA 655 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~~ 655 (712)
.+.+....+.|++..++++|-..+.+-. .-|+. ..+...+-.+....|+..|+..++...+. .|++..
T Consensus 150 ~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r 229 (308)
T KOG1585|consen 150 FELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSR 229 (308)
T ss_pred HHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHH
Confidence 3445556667777777777766655541 11221 22333344455566777777777765442 455556
Q ss_pred hHHHHHHHHHhcCCchhHHHH
Q 005136 656 GYVLLSNIYASAGRWIDAMNV 676 (712)
Q Consensus 656 ~~~~l~~~~~~~g~~~eA~~~ 676 (712)
+...|+..|- .|+.+++..+
T Consensus 230 ~lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 230 SLENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhc-cCCHHHHHHH
Confidence 6666665554 3445555443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=3.7 Score=44.35 Aligned_cols=114 Identities=10% Similarity=0.055 Sum_probs=49.0
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHH
Q 005136 530 SGYAKESINLFEEMEKTS-ITPNEL--TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSE 606 (712)
Q Consensus 530 ~~~~~~A~~~~~~~~~~~-~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 606 (712)
..+.+.|...+....... +.+... ....+.......+..+.+...++..... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 344566666666553322 222221 1222222222222244555555544311 1133333333444446666666
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 005136 607 AEDFINSMPF--EPDSNAWASLLSGCKTYKNEQIAERAVKNL 646 (712)
Q Consensus 607 A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 646 (712)
+...+..|+. .-...-.--+..++...|+.++|...++++
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666631 111111222333334456666666666665
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.70 E-value=4.7 Score=45.08 Aligned_cols=144 Identities=14% Similarity=0.086 Sum_probs=93.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc
Q 005136 488 LGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGL 567 (712)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 567 (712)
.+....+.-.+.|-+++|..++..-.+.-...|.+...-+...+.+++|.-.|+..=+ ..-.+.+|...|+
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~d 980 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGD 980 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhcc
Confidence 4444555556777778887777665555556677777777788888888877765422 2345677888899
Q ss_pred HHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 005136 568 VDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLW 647 (712)
Q Consensus 568 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 647 (712)
|.+|..+..++.. +..--..+-..|+.-+...+++-+|-+++......|... +..++....+++|.++....-
T Consensus 981 Wr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a-----v~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 981 WREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA-----VALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH-----HHHHhhHhHHHHHHHHHHhcc
Confidence 9999988887751 111112223567778888899989888888875444322 223445556666766666554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.39 Score=49.63 Aligned_cols=114 Identities=15% Similarity=0.045 Sum_probs=65.4
Q ss_pred cCcHHHHHHHHHhcchhcCCCCchHHHH-HHHHHhhhcCChHHHHHHHHhCCC------CCCHHHHHHHHHHHhhcCCHH
Q 005136 565 SGLVDKGLKYFNSMEPIYNIKPNGRHYT-CVVDMLSRSGRLSEAEDFINSMPF------EPDSNAWASLLSGCKTYKNEQ 637 (712)
Q Consensus 565 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~l~~~~~~~g~~~ 637 (712)
..+.+.|.++++.+... -|+...|. .-++.+...|+.++|++.|++... +.....+..+.+.+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34556666666666532 45444333 334555666777777777765421 112334455566666777777
Q ss_pred HHHHHHHHHhccCCCCCchHHHH-HHHHHhcCCc-------hhHHHHHHHHH
Q 005136 638 IAERAVKNLWKLAEEHPAGYVLL-SNIYASAGRW-------IDAMNVRKLMT 681 (712)
Q Consensus 638 ~a~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~-------~eA~~~~~~~~ 681 (712)
+|...+.++.+...-+..+|..+ +-++...|+. ++|.+++.++-
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 77777777777655544444433 3334566766 66666666553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.66 E-value=1.8 Score=40.14 Aligned_cols=197 Identities=16% Similarity=0.184 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHc-CCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC--CCc-chHHHHHH-
Q 005136 451 KSTFSSVLCASASVASLEKGKDLHGKIIKL-GFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD--KNE-ISWTVMVR- 525 (712)
Q Consensus 451 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~- 525 (712)
...+......+...+....+...+...... ........+......+...+++..+...+..... ++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344555555566666666666666555542 2334444555555666666777777777776653 222 22333333
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC--chHHHHHHHHHhh
Q 005136 526 GLAESGYAKESINLFEEMEKTSITP----NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP--NGRHYTCVVDMLS 599 (712)
Q Consensus 526 ~~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~ 599 (712)
.+...|+++.|...+.+... ..| ....+......+...++.+.+...+..... ..+ ....+..+...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHH
Confidence 68889999999999998865 333 233444444456778899999999998873 233 3677888888999
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 600 RSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 600 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
..+++++|...+... ...|+ ...+......+...+..+.+...+.+.....|.
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999998887 44454 455555555555777899999999999998887
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.042 Score=46.95 Aligned_cols=124 Identities=8% Similarity=0.044 Sum_probs=82.9
Q ss_pred HHHhcccCcHHHHHHHHHhcchhcCCCCc-----hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHh
Q 005136 559 LFACSHSGLVDKGLKYFNSMEPIYNIKPN-----GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCK 631 (712)
Q Consensus 559 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 631 (712)
..-+...|++++|..-|..+... +++. ...|..-+.++.+.+.|+.|+.-..+. .+.|. ...+..-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 44567889999999998888743 2222 224555567788899999998877766 56665 333344455688
Q ss_pred hcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHH--HHHHHHhCC
Q 005136 632 TYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMN--VRKLMTEKG 684 (712)
Q Consensus 632 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~--~~~~~~~~~ 684 (712)
...++++|..-|+++++.+|....+-...+.+--......++++ .+.++++-|
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 88899999999999999999877666655555444443344433 344555544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.081 Score=52.28 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=49.5
Q ss_pred CC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 005136 585 KP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDS----NAWASLLSGCKTYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 585 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 649 (712)
.| +...++.++.+|...|++++|+..|++. .+.|+. ..|.++..+|...|+.++|++.++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45 5677788888888888888888888775 566663 34777777788888888888888888876
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.13 Score=41.71 Aligned_cols=49 Identities=12% Similarity=0.259 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHH
Q 005136 548 ITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVD 596 (712)
Q Consensus 548 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 596 (712)
+.|+..++.+++.+|+..|++..|.++++.+.+.++++.+..+|..|..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4455555666666666666666666666666555554445555555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.41 E-value=4.7 Score=43.20 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=68.0
Q ss_pred HHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcCCCCcch--HHHHHHHHHhcCChH
Q 005136 27 LLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNGFDLVV--HNCMINANIQWGNLE 104 (712)
Q Consensus 27 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~ 104 (712)
+++-+....+...-..+++.+.+.|+. +....+.|+.+|.+.++.++-.+..+... ...+. ....+..+.+.+-++
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLD 480 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHH
Confidence 344445555555556666777777765 44455567778888887777777666655 33332 344555555555555
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCC
Q 005136 105 EAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQ 147 (712)
Q Consensus 105 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 147 (712)
+|..+-.+... ++.....++ -..|++++|.+.+..++.+
T Consensus 481 ~a~~LA~k~~~-he~vl~ill---e~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 481 EAELLATKFKK-HEWVLDILL---EDLHNYEEALRYISSLPIS 519 (933)
T ss_pred HHHHHHHHhcc-CHHHHHHHH---HHhcCHHHHHHHHhcCCHH
Confidence 55554443333 344433333 3567788888888887754
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.042 Score=32.38 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=12.5
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 656 GYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 656 ~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
++..+|.++.+.|++++|++.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344444455555555555555444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.98 Score=37.86 Aligned_cols=122 Identities=17% Similarity=0.185 Sum_probs=56.9
Q ss_pred HHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHH
Q 005136 458 LCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESI 537 (712)
Q Consensus 458 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 537 (712)
+..+...+.......+++.+.+.+ ..+....+.++..|++.+ .....+.++. ..+.......+..|.+.+.++++.
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~ 89 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAV 89 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHH
Confidence 333334444555555555555444 244455555666665442 2333333331 123333444555556666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhccc-CcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhh
Q 005136 538 NLFEEMEKTSITPNELTILSVLFACSHS-GLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLS 599 (712)
Q Consensus 538 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 599 (712)
.++.++-. +...+..+... ++++.|.+++.+.. ++..|..++..+.
T Consensus 90 ~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~~-------~~~lw~~~~~~~l 136 (140)
T smart00299 90 ELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQN-------NPELWAEVLKALL 136 (140)
T ss_pred HHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhCC-------CHHHHHHHHHHHH
Confidence 66554321 11122222222 56666666665432 4445555555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.8 Score=46.64 Aligned_cols=131 Identities=12% Similarity=0.042 Sum_probs=69.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhH
Q 005136 88 VVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFE 167 (712)
Q Consensus 88 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 167 (712)
.-.+.++.-+-+.|..+.|+.+-.. + ..-.....+.|+++.|.+...+.. +...|..|.....+.|+++-
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~l 365 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIEL 365 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHH
Confidence 3355556666666666666655432 1 122334456666666666665554 44466667776677777777
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHh
Q 005136 168 ALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFD 243 (712)
Q Consensus 168 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 243 (712)
|.+.|++... +..|+-.+...|+.+...++.+.....| -++....++.-.|+.++..+++.
T Consensus 366 Ae~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 366 AEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 7666665432 3344444555566666666655555544 23334444444566666555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.21 Score=46.55 Aligned_cols=161 Identities=12% Similarity=0.009 Sum_probs=119.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHH----HHHHHhhhcC
Q 005136 527 LAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYT----CVVDMLSRSG 602 (712)
Q Consensus 527 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g 602 (712)
.-..|+..+|-..++++.+. .+.|...+...-.+|...|+.+.-...++++.. ...|+.+.|. .++.++..+|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhc
Confidence 34578888999999999885 556777788888899999999999999999883 3455554433 4556677999
Q ss_pred ChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC----CchHHHHHHHHHhcCCchhHHHH
Q 005136 603 RLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH----PAGYVLLSNIYASAGRWIDAMNV 676 (712)
Q Consensus 603 ~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~eA~~~ 676 (712)
-+++|.+.-++. .+. .|.-.-......+...|++.++.++..+.-..-..+ ..-|-+.+..+...+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999999987 443 345666777777888999999999888764432221 22455666677788999999999
Q ss_pred HHHHHhCCCccCCc
Q 005136 677 RKLMTEKGLRKSGG 690 (712)
Q Consensus 677 ~~~~~~~~~~~~~~ 690 (712)
|++=+-+..++..+
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 99876655555554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.08 E-value=8 Score=46.86 Aligned_cols=320 Identities=11% Similarity=0.052 Sum_probs=172.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhcCCC--C-ceeeHHHHHHHHhccCChhhHHHHhhc-CCCCCcccHHHHHHHHHhcCC
Q 005136 356 ALIDLYSKCGETKDGRLVFDSIVEKDV--A-HVVSWNSMIGGYGLNGQMEEAKELFDN-MPKRNDVSWSAIISGYLEHKQ 431 (712)
Q Consensus 356 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 431 (712)
.+..+-.+++.+.+|...+++-..... . ....+..+...|...++++....+... ...+ ....-|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhcc
Confidence 455567788899999998888421111 1 122344444478888888777666553 2222 23345566778899
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhcc
Q 005136 432 FDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDR 511 (712)
Q Consensus 432 ~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 511 (712)
+..|..-|+.+.+.+ ++...++..++......+.+....-..+......-+-....++.-+++--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 999999999998865 344667777777766677776666544444332211112222223333356677777666655
Q ss_pred CCCCCcchHHHH--HHHHHHcCChH--HHHHHHHHHHHcCCCC--------CH-HHHHHHHHHhcccCcHHHHHHHHHhc
Q 005136 512 MPDKNEISWTVM--VRGLAESGYAK--ESINLFEEMEKTSITP--------NE-LTILSVLFACSHSGLVDKGLKYFNSM 578 (712)
Q Consensus 512 ~~~~~~~~~~~l--~~~~~~~~~~~--~A~~~~~~~~~~~~~p--------~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 578 (712)
..+...|... +..+.+..+-+ .-...++.+++.-+.| +. ..|..++....-. +.+...+.+...
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~~~ 1619 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELKKV 1619 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhhcc
Confidence 4455555554 23333222211 1112333333221111 10 1233333222111 111112222222
Q ss_pred chhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC----CCCC-----CHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 005136 579 EPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM----PFEP-----DSNAWASLLSGCKTYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 579 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 649 (712)
.......-+...|..-...-....+..+-+--+++. ..+| -..+|...+..+...|.++.|...+-.+.+.
T Consensus 1620 s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~ 1699 (2382)
T KOG0890|consen 1620 SYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES 1699 (2382)
T ss_pred CccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc
Confidence 111111111222222111111111122211112221 1122 2677888888889999999999999888877
Q ss_pred CCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 650 AEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 650 ~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
. -|.++.-.++.++..|+...|+.++++.++.+.
T Consensus 1700 r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1700 R--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred c--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 7 468999999999999999999999999887654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.47 Score=49.11 Aligned_cols=116 Identities=18% Similarity=0.078 Sum_probs=67.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHhcccCcHHHHHHHHHhcchh-cCCCC-chHHHHHHHHHhhhcCChHHH
Q 005136 531 GYAKESINLFEEMEKTSITPNELTILSV-LFACSHSGLVDKGLKYFNSMEPI-YNIKP-NGRHYTCVVDMLSRSGRLSEA 607 (712)
Q Consensus 531 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A 607 (712)
.+.+.|.++++.+.+ .-|+...|... .+.+...|+.++|++.|++.... ...+. ....+--++.++.-.++|++|
T Consensus 247 ~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 455667777777776 45666554433 23455667777777777765421 11111 233444566677777778887
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHH-HhhcCCH-------HHHHHHHHHHhc
Q 005136 608 EDFINSMPF--EPDSNAWASLLSG-CKTYKNE-------QIAERAVKNLWK 648 (712)
Q Consensus 608 ~~~~~~~~~--~p~~~~~~~l~~~-~~~~g~~-------~~a~~~~~~~~~ 648 (712)
...+..+.. .-+...|..+..+ +...|+. ++|.++++++..
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 777777732 2234444444444 4456666 666666666644
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.08 E-value=2.3 Score=39.63 Aligned_cols=154 Identities=13% Similarity=0.111 Sum_probs=102.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCC
Q 005136 524 VRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGR 603 (712)
Q Consensus 524 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 603 (712)
.......|++.+|...|+...... +-+......+..+|...|+.+.|..++..+-.+ .-.........-+..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhc
Confidence 345667888888888888887742 223456667788888899999999998887522 111111222233455566666
Q ss_pred hHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC--CCCCchHHHHHHHHHhcCCchhHHHHHHH
Q 005136 604 LSEAEDFINSMPFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLA--EEHPAGYVLLSNIYASAGRWIDAMNVRKL 679 (712)
Q Consensus 604 ~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 679 (712)
..+...+-.+....| |...-..+...+...|+.+.|.+.+-.++..+ -++..+--.|..++...|.-+.+...+++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 666666666665566 56666677777888899998888887777654 44677778888888888866555544443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.3 Score=37.04 Aligned_cols=127 Identities=11% Similarity=0.053 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHh
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDML 598 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 598 (712)
....++..+...+........++.+...+ ..+....+.++..|++.+ ..+..+.++.- ++.......++.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~~-------~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDNK-------SNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHhc-------cccCCHHHHHHHH
Confidence 34556777777788888888888888765 345566777777777653 44555555521 1222333466777
Q ss_pred hhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 599 SRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTY-KNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 599 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
.+.+.++++..++.+++. +...+..+... ++.+.|.+++++ +.++..|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 788888888888888753 12222233333 788888887776 335666666665554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.8 Score=42.96 Aligned_cols=153 Identities=12% Similarity=0.084 Sum_probs=107.7
Q ss_pred hcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHhcccCcHHH
Q 005136 498 KSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTIL----SVLFACSHSGLVDK 570 (712)
Q Consensus 498 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~ 570 (712)
-.|+..+|-..++++.+ .|...+..-=.++...|+.+.-...++++... ..|+.+.|. .+..++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45677777777777663 46677777778899999998888888888764 355554333 23334567899999
Q ss_pred HHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCCCC--CC----HHHHHHHHHHHhhcCCHHHHHHHH
Q 005136 571 GLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMPFE--PD----SNAWASLLSGCKTYKNEQIAERAV 643 (712)
Q Consensus 571 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--p~----~~~~~~l~~~~~~~g~~~~a~~~~ 643 (712)
|.+.-++.. .+.| |.....++...+...|++.++.+++.+-... .. .-.|.-..-.+...+.++.|+++|
T Consensus 194 AEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999998887 4566 6777778888899999999999999886321 11 111222333456778999999999
Q ss_pred HHHh--ccCCCCC
Q 005136 644 KNLW--KLAEEHP 654 (712)
Q Consensus 644 ~~~~--~~~p~~~ 654 (712)
.+-+ ++..++.
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8754 3444544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.043 Score=34.83 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=30.0
Q ss_pred CchHHHHHHHHHhcCCchhHHHHHHHHHhCCCcc
Q 005136 654 PAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRK 687 (712)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 687 (712)
|.++..|+.+|.+.|++++|+++++++++..+..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999976543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.047 Score=32.23 Aligned_cols=30 Identities=10% Similarity=0.015 Sum_probs=14.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 623 WASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 623 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
|..+...+...|++++|+..++++++++|+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 344444445555555555555555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.052 Score=32.57 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 656 GYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 656 ~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
++..|+.+|.+.|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.69 E-value=1.3 Score=45.27 Aligned_cols=130 Identities=19% Similarity=0.276 Sum_probs=59.2
Q ss_pred HHHhcCChhHHHHHHH--HHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCCh
Q 005136 158 GFVQNGFSFEALKLFL--KLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEV 235 (712)
Q Consensus 158 ~~~~~g~~~~A~~~~~--~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 235 (712)
...-.|+++++.++.. ++.. .+ +....+.++.-+.+.|-.+.|+++...- ..-.....+.|+.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCH
Confidence 3455667777666664 2221 11 1334556666666666666666654321 1223344566666
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005136 236 DLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTR 309 (712)
Q Consensus 236 ~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 309 (712)
+.|.++.++.. +...|..|.....+.|+++-|++.|.+... |..|+-.|.-.|+.++-.++.+....
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666655443 333555555555555555555555555442 34444444455555444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.046 Score=32.23 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 005136 621 NAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 621 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
..+..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456778888999999999999999999999985
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.11 Score=44.08 Aligned_cols=56 Identities=11% Similarity=0.214 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHh
Q 005136 353 ISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELF 408 (712)
Q Consensus 353 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 408 (712)
+...++..+...|++++|......+...+|.+...|..+|.+|...|+...|.+.|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y 119 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVY 119 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 45566777888899999999999998888888888888888888888888885554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.58 Score=37.98 Aligned_cols=94 Identities=18% Similarity=0.244 Sum_probs=55.8
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHH
Q 005136 517 EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVD 596 (712)
Q Consensus 517 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 596 (712)
..++..++.++++.|+.+....+++..- |+.++... ..+. ......+.|+..+..+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHHH
Confidence 3455566666666666666665554433 23322110 0000 2223456778888888888
Q ss_pred HhhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHh
Q 005136 597 MLSRSGRLSEAEDFINSM----PFEPDSNAWASLLSGCK 631 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~ 631 (712)
+|+..|++..|+++++.. +++-+...|..++.-+.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888888888888877765 45555777777776643
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.46 E-value=4.8 Score=38.53 Aligned_cols=19 Identities=16% Similarity=-0.214 Sum_probs=13.7
Q ss_pred HHhhcCCHHHHHHHHHHHh
Q 005136 629 GCKTYKNEQIAERAVKNLW 647 (712)
Q Consensus 629 ~~~~~g~~~~a~~~~~~~~ 647 (712)
.+.+.++++.|.++++-++
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3567788888888887654
|
It is also involved in sporulation []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.27 Score=41.19 Aligned_cols=88 Identities=17% Similarity=0.110 Sum_probs=61.1
Q ss_pred HhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHH-HHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHH
Q 005136 597 MLSRSGRLSEAEDFINSM-PFEPDSNAWASLLS-GCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAM 674 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~ 674 (712)
.-.+.++.+++..++..+ ..+|.......+-. .+...|++.+|.++++.+.+..|..|..--.++.++...|+. +=.
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~-~Wr 97 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP-SWR 97 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh-HHH
Confidence 335677888888888888 34666544443333 367889999999999998888888887777788888777763 334
Q ss_pred HHHHHHHhCCC
Q 005136 675 NVRKLMTEKGL 685 (712)
Q Consensus 675 ~~~~~~~~~~~ 685 (712)
.+-+++++.+.
T Consensus 98 ~~A~evle~~~ 108 (160)
T PF09613_consen 98 RYADEVLESGA 108 (160)
T ss_pred HHHHHHHhcCC
Confidence 44455666553
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.87 Score=43.24 Aligned_cols=162 Identities=11% Similarity=0.012 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCC---C--CHHHHHHHHHHhcccCcHHHHHHHHHhcc---hhcCCCCc-----
Q 005136 521 TVMVRGLAESGYAKESINLFEEMEKTSIT---P--NELTILSVLFACSHSGLVDKGLKYFNSME---PIYNIKPN----- 587 (712)
Q Consensus 521 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~p~----- 587 (712)
.++..++...+.++++++.|+...+---. | ....+..|...|....|+++|.-+..+.. +..++..-
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 34556666677788888888776542111 1 12456777777777888888776655432 12232221
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC--C----C
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-P---FEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAE--E----H 653 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~----~ 653 (712)
......|.-+|-..|+.-+|.+..++. + +..| ......+...|...|+.+.|..-|+.+...-. + .
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgq 285 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQ 285 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHH
Confidence 223344566677778877777777664 1 1222 23345556668888888888888887765321 1 1
Q ss_pred CchHHHHHHHHHhcCCchh-----HHHHHHHHHh
Q 005136 654 PAGYVLLSNIYASAGRWID-----AMNVRKLMTE 682 (712)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~e-----A~~~~~~~~~ 682 (712)
..++...++.+....-..+ |+++.++.++
T Consensus 286 v~al~g~Akc~~~~r~~~k~~~Crale~n~r~le 319 (518)
T KOG1941|consen 286 VEALDGAAKCLETLRLQNKICNCRALEFNTRLLE 319 (518)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 2344444444443333333 6666666554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.21 Score=40.87 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=37.3
Q ss_pred hcCChHHHHHHHHhC-CCCCCHHHHHHH-HHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 005136 600 RSGRLSEAEDFINSM-PFEPDSNAWASL-LSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGR 669 (712)
Q Consensus 600 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 669 (712)
..++.+++..++..+ ...|+......+ ...+...|++.+|.++++.+.+-.|..|..--.++.++...|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 456666666666665 233432222222 1224566666666666666665555555555555555555554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.13 Score=40.64 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=74.9
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC----CchHHHHHHHHHhcC
Q 005136 595 VDMLSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH----PAGYVLLSNIYASAG 668 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g 668 (712)
+-++...|+.+.|++.|.+. ..- .....|+.-..++.-+|+.++|..-+.+++++.-+. ..+|..-+.+|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45677899999999999886 333 457778888899999999999999999999985442 246778888899999
Q ss_pred CchhHHHHHHHHHhCCC
Q 005136 669 RWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 669 ~~~eA~~~~~~~~~~~~ 685 (712)
+-+.|+.-|+..-+-|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999999998888774
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.031 Score=47.24 Aligned_cols=128 Identities=17% Similarity=0.130 Sum_probs=81.1
Q ss_pred HHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcCCCCcchHHHHHHHHHhcCChHHH
Q 005136 27 LLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNGFDLVVHNCMINANIQWGNLEEA 106 (712)
Q Consensus 27 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 106 (712)
++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.++.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5666788889999999999999888777899999999999999888888888874333 3445666777777777777
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCC
Q 005136 107 QRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGF 164 (712)
Q Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 164 (712)
.-++.++...+...- .+...++++.|.+.+.+. ++...|..++..+...+.
T Consensus 90 ~~Ly~~~~~~~~al~-----i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 90 VYLYSKLGNHDEALE-----ILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHCCTTHTTCSS-----TSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHcccHHHHHH-----HHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 666654433211110 012223333333333332 245566666666655443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.02 E-value=2.1 Score=37.69 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=83.3
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHH
Q 005136 517 EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVV 595 (712)
Q Consensus 517 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 595 (712)
+.+||-+.--+...|+++.|.+.|+...+ +.|.. .+...-.-++.-.|++..|.+-+...-+. +|+.+ |..|-
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~DP-fR~LW 172 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPNDP-FRSLW 172 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhc---CCCCh-HHHHH
Confidence 34677777777788888888888888777 44432 22221222344567777777655554422 34222 22221
Q ss_pred H-HhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHH-HhhcCCHHHHHHHHHHHhccCCCC-------CchHHHHHHHHHh
Q 005136 596 D-MLSRSGRLSEAEDFINSMPFEPDSNAWASLLSG-CKTYKNEQIAERAVKNLWKLAEEH-------PAGYVLLSNIYAS 666 (712)
Q Consensus 596 ~-~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~ 666 (712)
- .-.+.-++.+|..-+..--...+..-|...+-. |..+=..+ .+++++.+-..++ .++|..|++-+..
T Consensus 173 LYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 173 LYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 1 112344566776544332112333334333322 22111111 1222222222222 3578888888889
Q ss_pred cCCchhHHHHHHHHHhCC
Q 005136 667 AGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 667 ~g~~~eA~~~~~~~~~~~ 684 (712)
.|..++|..+|+-.+.-+
T Consensus 250 ~G~~~~A~~LfKLaiann 267 (297)
T COG4785 250 LGDLDEATALFKLAVANN 267 (297)
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 999999988887665533
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.94 E-value=13 Score=41.73 Aligned_cols=80 Identities=8% Similarity=0.063 Sum_probs=40.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 005136 423 ISGYLEHKQFDLVFAVFNEMLLSGEIPNKS--TFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSG 500 (712)
Q Consensus 423 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 500 (712)
+.+|...|+|.+|+.+-.++... -+.. +-..|+..+...+++-+|-++..+.... ....+..|++..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHh
Confidence 44555566666666666655321 1111 1134555555566666655555443321 122334455666
Q ss_pred ChHHHHHHhccCC
Q 005136 501 DIESSRRVFDRMP 513 (712)
Q Consensus 501 ~~~~A~~~~~~~~ 513 (712)
.+++|.++.....
T Consensus 1041 ~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1041 EWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHhcc
Confidence 6777766655544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.89 E-value=3.7 Score=35.12 Aligned_cols=134 Identities=11% Similarity=0.094 Sum_probs=76.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcC
Q 005136 301 FRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEK 380 (712)
Q Consensus 301 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 380 (712)
.++++.+.+.+++|+...+..++..+.+.|.+.... .++..++-+|.......+-.+. +....+.++--+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 456667777889999999999999999888866544 3444555555544443332221 2222333332233222
Q ss_pred CCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005136 381 DVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEML 443 (712)
Q Consensus 381 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 443 (712)
- ...+..+++.+...|++-+|+++.+....-+......++.+..+.++...-..+|+-..
T Consensus 88 L---~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 L---GTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 23456777788888888888777766544444444445555555555444444444333
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.85 E-value=5.7 Score=39.69 Aligned_cols=149 Identities=8% Similarity=0.024 Sum_probs=79.3
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC--chHH
Q 005136 516 NEISWTVMVRGLAESGYAKESINLFEEMEKTSITP---NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP--NGRH 590 (712)
Q Consensus 516 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~ 590 (712)
...+|..++..+.+.|+++.|...+.++...+..+ .......-+......|+..+|+..++..... .... +...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44567778888888888888888888877643211 2223333445556677888888887777631 1111 1111
Q ss_pred HHHHHHHhhhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHhh------cCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 005136 591 YTCVVDMLSRSGRLSEAEDF-INSMPFEPDSNAWASLLSGCKT------YKNEQIAERAVKNLWKLAEEHPAGYVLLSNI 663 (712)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 663 (712)
...+...+.. ..+..... ........-...+..+...+.. .++.+++...++.+.+..|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 0000000001122222222223 4788999999999999999988888888888
Q ss_pred HHhc
Q 005136 664 YASA 667 (712)
Q Consensus 664 ~~~~ 667 (712)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6644
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.085 Score=31.07 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=26.8
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 655 AGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 655 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
.+|..+|.++...|++++|+..+++.++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4789999999999999999999999988543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.70 E-value=11 Score=40.12 Aligned_cols=168 Identities=17% Similarity=0.184 Sum_probs=110.5
Q ss_pred HHHHhcCCChhHhHHHHhhcCC--C---CcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHH
Q 005136 63 LIMYLGSRKSLEANEIVKDLNG--F---DLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEES 137 (712)
Q Consensus 63 ~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 137 (712)
++++.+.+.+++|..+.+.... | -..++...+..+...|++++|....-.|...+..-|..-+..+...+...+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 6788888999999988887643 2 2247888899999999999999999999988888888888888888887777
Q ss_pred HHHhhhCCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCC
Q 005136 138 MWYFERNPF-QNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFE 216 (712)
Q Consensus 138 ~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 216 (712)
..++-..++ -+...|..++..+.. .+ ....++...+. +...|..+...-+...++.+ . .
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~-~~---~~~F~e~i~~W----p~~Lys~l~iisa~~~q~~q----------~--S 502 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA-SD---VKGFLELIKEW----PGHLYSVLTIISATEPQIKQ----------N--S 502 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH-HH---HHHHHHHHHhC----ChhhhhhhHHHhhcchHHHh----------h--c
Confidence 666655544 456678888888877 22 22223322221 22233322211111111111 0 1
Q ss_pred CCccHHHHHHHHHHccCChHHHHHHHhhcCCCCc
Q 005136 217 KHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDV 250 (712)
Q Consensus 217 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 250 (712)
-+......|+..|...+++..|.+++-...++++
T Consensus 503 e~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 503 ESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred cchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 1222333488888899999999999888776544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.58 Score=37.17 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=70.5
Q ss_pred HHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCC----HHHHHHHHHHHh
Q 005136 559 LFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF-EPD----SNAWASLLSGCK 631 (712)
Q Consensus 559 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~----~~~~~~l~~~~~ 631 (712)
.-+....|+.+.|++.|.+.. .+-| +...|+.-+.++--.|+.++|++-+++. .. .|. -..+..-...|.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 346778999999999999887 4466 8899999999999999999999988886 21 122 122333333477
Q ss_pred hcCCHHHHHHHHHHHhccCCCC
Q 005136 632 TYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 632 ~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
..|+.+.|..-|+.+.++....
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCHH
Confidence 8999999999999998876553
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.64 E-value=3.2 Score=35.51 Aligned_cols=132 Identities=10% Similarity=0.052 Sum_probs=78.2
Q ss_pred hHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcCCCCcchHHHHHHHHHhc--CChHHHHHHHhhCCCCChh
Q 005136 42 ALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNGFDLVVHNCMINANIQW--GNLEEAQRLFDGMPERNEV 119 (712)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~ 119 (712)
+...-+.+.|+.|+...+..+++.+.+.|.+..-..++..-.-+|.......+..+... .-.+-|.+++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~---- 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT---- 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh----
Confidence 44445567788888888888888888888888777777766545544333433333221 113444555555442
Q ss_pred HHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005136 120 SWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLE 177 (712)
Q Consensus 120 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 177 (712)
.+..++..+...|++-+|.++.......+...-..++.+..+.++...-..+|.-..+
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2334456666777777777777665444444455566666666665554444444443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.55 Score=42.84 Aligned_cols=100 Identities=11% Similarity=0.063 Sum_probs=68.6
Q ss_pred CCcccHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccc----------------chHHHHH
Q 005136 147 QNVISWTAAICGFVQ-----NGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEIN----------------DFRLGLS 205 (712)
Q Consensus 147 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~----------------~~~~a~~ 205 (712)
.|-.+|...+..+.. .+..+-....+..|.+-|+..|..+|+.|+..+-+.. +-+=+.+
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 344445555544432 3455556667788888888888888888887665432 2344778
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHHHccCCh-HHHHHHHhhcC
Q 005136 206 VFGLIFKAGFEKHVSVCNSLITLSLKMGEV-DLARSVFDRME 246 (712)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~ 246 (712)
++++|..+|+-||..+-..|+.++.+.+.. .+..++.-.|.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 999999999999999999999998877653 34444444444
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=13 Score=40.32 Aligned_cols=452 Identities=8% Similarity=0.005 Sum_probs=220.7
Q ss_pred hcCCChhHhHHHHhhcCCCCcch---HHHHHHHHHhcCChHHHHHHHhhCCC-CCh-hHHHHHHHHHHccCChHHHHHHh
Q 005136 67 LGSRKSLEANEIVKDLNGFDLVV---HNCMINANIQWGNLEEAQRLFDGMPE-RNE-VSWTALISGFMKHGRVEESMWYF 141 (712)
Q Consensus 67 ~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~l~~~~~~~g~~~~a~~~~ 141 (712)
.+.|++..+..+-.++....... |..+...+ .....++...++++-.. |-. ..-...+..+.+.+++..... |
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~-~ 121 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDL-MNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLA-F 121 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhcc-ccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHH-h
Confidence 46677777777776664333322 22222221 23356666677766554 322 222334555667888888887 4
Q ss_pred hhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccH
Q 005136 142 ERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSV 221 (712)
Q Consensus 142 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (712)
..-++.+...-.....+....|+.++|......+-..|.. .+..+..++..+...|... +...
T Consensus 122 ~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt----------------~~d~ 184 (644)
T PRK11619 122 SPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQD----------------PLAY 184 (644)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCC----------------HHHH
Confidence 4333456666667777888888888887777777665533 3344555555554433222 2222
Q ss_pred HHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHH--HhcCChhH
Q 005136 222 CNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARY--NQSGYPEE 299 (712)
Q Consensus 222 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~ 299 (712)
+.. +......|+...|..+...+..........++..+.+ ...+..++.... ++...-..++.++ ....+.+.
T Consensus 185 w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~ 259 (644)
T PRK11619 185 LER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAAVAFASVARQDAEN 259 (644)
T ss_pred HHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHHHHHHHHHHhCHHH
Confidence 222 3344456666666666665532211122233333322 222333322221 1111111111111 23455688
Q ss_pred HHHHHHHHHhCC-CCCCHH--HHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHh
Q 005136 300 AFRLFRQMTRYS-FKPNTS--CFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDS 376 (712)
Q Consensus 300 a~~~~~~m~~~~-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 376 (712)
|..++....... ..+... ....+.......+...++...+....... .+.....--+......++++.+...+..
T Consensus 260 A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~ 337 (644)
T PRK11619 260 ARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLAR 337 (644)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHh
Confidence 888887764432 322222 12222222222221444444444433221 2344444455566678888888888888
Q ss_pred hhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHH
Q 005136 377 IVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQF-DLVFAVFNEMLLSGEIPNKSTFS 455 (712)
Q Consensus 377 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~g~~p~~~~~~ 455 (712)
|.........-.--+.+++...|+.++|...|+.+..+ ...|..+...-. |.. .-....... ....+..++ -.
T Consensus 338 L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-~~fYG~LAa~~L--g~~~~~~~~~~~~-~~~~~~~~~--~~ 411 (644)
T PRK11619 338 LPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-RGFYPMVAAQRL--GEEYPLKIDKAPK-PDSALTQGP--EM 411 (644)
T ss_pred cCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-CCcHHHHHHHHc--CCCCCCCCCCCCc-hhhhhccCh--HH
Confidence 75433223334445666666678888888888887553 223333322221 111 000000000 000000000 11
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC------CCcchHHHHHHHHHH
Q 005136 456 SVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD------KNEISWTVMVRGLAE 529 (712)
Q Consensus 456 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~ 529 (712)
.-+..+...|....|...+..+.+. .+......+.......|..+.+......... .-+..|...+..+..
T Consensus 412 ~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~ 488 (644)
T PRK11619 412 ARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTS 488 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHH
Confidence 2233445667788888777777663 2334455556666677777777665544321 112234555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHH
Q 005136 530 SGYAKESINLFEEMEKTSITPNEL 553 (712)
Q Consensus 530 ~~~~~~A~~~~~~~~~~~~~p~~~ 553 (712)
.-.++.++-.----.++++.|+..
T Consensus 489 ~~~v~~~lv~ai~rqES~f~p~a~ 512 (644)
T PRK11619 489 GKGIPQSYAMAIARQESAWNPKAR 512 (644)
T ss_pred HcCCCHHHHHHHHHHhcCCCCCCc
Confidence 555555543333334556666644
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.48 E-value=6 Score=36.22 Aligned_cols=75 Identities=15% Similarity=-0.008 Sum_probs=45.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC--CCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHH
Q 005136 156 ICGFVQNGFSFEALKLFLKLLESGV--KPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSL 230 (712)
Q Consensus 156 i~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 230 (712)
+..-.+.|++++|.+.|+.+...-. +-...+...++.++.+.++++.|+...++..+.-+......|...|.+++
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 3344667777777777777765421 11234455566666677777777777777776654444445555555544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.14 Score=47.81 Aligned_cols=110 Identities=10% Similarity=0.084 Sum_probs=78.3
Q ss_pred HHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHhhcC
Q 005136 558 VLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMP-FE-PDSNAWASLLSGCKTYK 634 (712)
Q Consensus 558 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g 634 (712)
-..-|.+.|.+++|+..|.... ...| |+.++..-+.+|.+..++..|..-++..- .. .-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4557889999999999998877 5577 88888888999999999988877666542 11 11223333344445678
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHH
Q 005136 635 NEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAM 674 (712)
Q Consensus 635 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~ 674 (712)
+..+|.+-++.++++.|++.+ |-..+.+.....|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERK 215 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhh
Confidence 899999999999999999654 444555554444443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.42 E-value=2.2 Score=38.02 Aligned_cols=99 Identities=6% Similarity=-0.050 Sum_probs=51.8
Q ss_pred HHHHHHhhhc-CChHHHHHHHHhCC-----CCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 005136 592 TCVVDMLSRS-GRLSEAEDFINSMP-----FEPD---SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSN 662 (712)
Q Consensus 592 ~~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 662 (712)
..++..|... .++++|+..++... .+.+ ...+..+...-...+++.+|+.+|+++....-+|+-.-+..-.
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kd 196 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKD 196 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHH
Confidence 3456666544 67777777777651 1111 1222233333456788888999888887766665533332222
Q ss_pred H-----HHhcCCchhHHHHHHHHHhCCCccCCccc
Q 005136 663 I-----YASAGRWIDAMNVRKLMTEKGLRKSGGCS 692 (712)
Q Consensus 663 ~-----~~~~g~~~eA~~~~~~~~~~~~~~~~~~~ 692 (712)
- +++.-+.++ +. .++.+++...-+|.++
T Consensus 197 yflkAgLChl~~~D~-v~-a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 197 YFLKAGLCHLCKADE-VN-AQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHhHhcccH-HH-HHHHHHHHHhcCCccc
Confidence 2 223222221 22 2345555555666544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.41 E-value=1.9 Score=36.25 Aligned_cols=108 Identities=12% Similarity=0.083 Sum_probs=54.3
Q ss_pred cccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHHhhcCCHHHHH
Q 005136 563 SHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRLSEAEDFINSMPF-EPDSNAWASLLSGCKTYKNEQIAE 640 (712)
Q Consensus 563 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~ 640 (712)
...++.+.+..+++.+. -+.|. ...-..-+..+.+.|+|.+|..+|+++.. .|....-..++..|.....-..=.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 35566777777776665 34663 33334445667777888888888877732 333333344444444333222223
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHH
Q 005136 641 RAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMN 675 (712)
Q Consensus 641 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 675 (712)
.+..++++..++ +.+. .|...+........|..
T Consensus 98 ~~A~evle~~~d-~~a~-~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 98 RYADEVLESGAD-PDAR-ALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHhcCCC-hHHH-HHHHHHHHhccccchhh
Confidence 334444444443 3322 33334433333334443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.40 E-value=3.5 Score=41.50 Aligned_cols=99 Identities=12% Similarity=0.164 Sum_probs=66.8
Q ss_pred HHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCC--CCCHHH--HHHHHHHHh
Q 005136 556 LSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPF--EPDSNA--WASLLSGCK 631 (712)
Q Consensus 556 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~--~~~l~~~~~ 631 (712)
..+..++.+.|..++|++.++++.+......+......|+.+|...+.+.++..++.+... -|...+ |...+-...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 3566677788999999999999874432222455777899999999999999999998842 344333 444333333
Q ss_pred hcCC---------------HHHHHHHHHHHhccCCCCC
Q 005136 632 TYKN---------------EQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 632 ~~g~---------------~~~a~~~~~~~~~~~p~~~ 654 (712)
..++ ...|.+.++++++.+|.-|
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 3332 2346688889888777644
|
The molecular function of this protein is uncertain. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.11 Score=30.24 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 656 GYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 656 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
++..++.++.+.|++++|++.++++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556677777777777777777776654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.85 E-value=2.2 Score=36.09 Aligned_cols=118 Identities=12% Similarity=0.109 Sum_probs=76.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHH-----HHHHhh
Q 005136 527 LAESGYAKESINLFEEMEKTSITPNELTI--LSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTC-----VVDMLS 599 (712)
Q Consensus 527 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----l~~~~~ 599 (712)
+.+.+..++|+.-|..+.+.|... ...+ ..........|+...|+..|+++-.+ .|.+....- -+..+.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~-YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGS-YPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHh
Confidence 567788999999999998876432 1222 22233456788999999999988744 333332222 234556
Q ss_pred hcCChHHHHHHHHhCCC--CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 005136 600 RSGRLSEAEDFINSMPF--EPD-SNAWASLLSGCKTYKNEQIAERAVKNLWK 648 (712)
Q Consensus 600 ~~g~~~~A~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 648 (712)
..|.+++....++.+.. .|- ...-..|.-+-.+.|++..|...|..+.+
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 78888888888887732 232 22234455556788888888888888766
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.80 E-value=1.2 Score=38.48 Aligned_cols=93 Identities=11% Similarity=0.092 Sum_probs=64.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHH
Q 005136 524 VRGLAESGYAKESINLFEEMEKTSITPNEL------TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVD 596 (712)
Q Consensus 524 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 596 (712)
..-+...|++++|..-|.+.++ +.|... .|..-..++.+.+.++.|+.-..+.. .+.| ....+..-+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~kAl~RRAe 176 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYEKALERRAE 176 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhHHHHHHHHH
Confidence 3457788999999999988888 344332 24444456677888888888777766 4455 3444445567
Q ss_pred HhhhcCChHHHHHHHHhC-CCCCCHH
Q 005136 597 MLSRSGRLSEAEDFINSM-PFEPDSN 621 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~-~~~p~~~ 621 (712)
+|.+..++++|++=|+++ ...|...
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 888888889998888887 4456543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.21 Score=29.35 Aligned_cols=28 Identities=11% Similarity=-0.064 Sum_probs=13.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p 651 (712)
..+...|...|++++|...++++++++|
T Consensus 5 ~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 5 YNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3334444445555555555555554444
|
... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.012 Score=49.82 Aligned_cols=83 Identities=17% Similarity=0.142 Sum_probs=54.4
Q ss_pred HHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHH
Q 005136 457 VLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKES 536 (712)
Q Consensus 457 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 536 (712)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555666677777777777777666566777788888888888777888887774333 3334455666666666666
Q ss_pred HHHHHH
Q 005136 537 INLFEE 542 (712)
Q Consensus 537 ~~~~~~ 542 (712)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 666654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.60 E-value=1.2 Score=40.86 Aligned_cols=101 Identities=14% Similarity=0.191 Sum_probs=72.4
Q ss_pred CCCcccHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------------chHHHH
Q 005136 413 KRNDVSWSAIISGYLEH-----KQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVA----------------SLEKGK 471 (712)
Q Consensus 413 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~----------------~~~~a~ 471 (712)
++|-.+|-..+..+... +.++-....++.|.+-|+.-|..+|..|+..+-+.. +-+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 34445555555555432 345555677788889999999999999998876543 235688
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcCCh-HHHHHHhccCC
Q 005136 472 DLHGKIIKLGFPYDVFLGTALTDTYAKSGDI-ESSRRVFDRMP 513 (712)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 513 (712)
+++++|...|+.||..+-..|+.++++.+-. ....++.--|+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 9999999999999999999999999888764 33444443443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.21 E-value=11 Score=35.97 Aligned_cols=18 Identities=6% Similarity=-0.084 Sum_probs=8.7
Q ss_pred CccHHHHHHHHHHccCCh
Q 005136 218 HVSVCNSLITLSLKMGEV 235 (712)
Q Consensus 218 ~~~~~~~li~~~~~~~~~ 235 (712)
+..+-...+.++.+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~ 158 (280)
T PRK09687 141 STNVRFAVAFALSVINDE 158 (280)
T ss_pred CHHHHHHHHHHHhccCCH
Confidence 444444555555555543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.19 E-value=14 Score=37.29 Aligned_cols=151 Identities=14% Similarity=0.201 Sum_probs=70.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 005136 422 IISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGD 501 (712)
Q Consensus 422 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 501 (712)
++..+.....+.-+..+-.+|+.-| .+...|..++..|... ..+.-..+|+++.+..+ .|...-..|+..|.+ ++
T Consensus 72 ~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yEk-ik 146 (711)
T COG1747 72 LLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYEK-IK 146 (711)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHHH-hc
Confidence 3333333333333455555555543 4445555566555555 44555556665555432 233333444444444 55
Q ss_pred hHHHHHHhccCCCC------Cc---chHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhcccCcHHHH
Q 005136 502 IESSRRVFDRMPDK------NE---ISWTVMVRGLAESGYAKESINLFEEMEKT-SITPNELTILSVLFACSHSGLVDKG 571 (712)
Q Consensus 502 ~~~A~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a 571 (712)
.+.+..+|..+... +. ..|..+.. .-..+.+..+.+..++... |..--.+.+.-+-.-|....++++|
T Consensus 147 ~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~ea 224 (711)
T COG1747 147 KSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEA 224 (711)
T ss_pred hhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHH
Confidence 55555555543310 00 02222221 0123444444554444432 2222334444455556666677777
Q ss_pred HHHHHhcc
Q 005136 572 LKYFNSME 579 (712)
Q Consensus 572 ~~~~~~~~ 579 (712)
++++..+.
T Consensus 225 i~Ilk~il 232 (711)
T COG1747 225 IRILKHIL 232 (711)
T ss_pred HHHHHHHh
Confidence 77776665
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.78 Score=42.87 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=35.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
..++..+...|+.+.+...++++++.+|-+-..|..+..+|.+.|+...|+..++++.+
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 33444455556666666666666666666666666666666666666666666665543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.18 Score=27.45 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=20.5
Q ss_pred CchHHHHHHHHHhcCCchhHHHHHH
Q 005136 654 PAGYVLLSNIYASAGRWIDAMNVRK 678 (712)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~eA~~~~~ 678 (712)
|.+...|+.++...|++++|..+++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3467788999999999999988875
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.92 E-value=4.4 Score=35.26 Aligned_cols=86 Identities=9% Similarity=-0.040 Sum_probs=38.7
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCCchH----HHHHHHHHhhhcCChHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcC
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKPNGR----HYTCVVDMLSRSGRLSEAEDFINSMPFEPD--SNAWASLLSGCKTYK 634 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~g 634 (712)
.+...|++++|...++..... +.|.. .--.|++.....|.+++|+..++... .++ ......-...+...|
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~kg 173 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHHcC
Confidence 445556666666555544411 11111 11234445555566666666555543 111 111122222345555
Q ss_pred CHHHHHHHHHHHhccC
Q 005136 635 NEQIAERAVKNLWKLA 650 (712)
Q Consensus 635 ~~~~a~~~~~~~~~~~ 650 (712)
+.++|...|+++++..
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 5555555555555544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.90 E-value=3.7 Score=41.30 Aligned_cols=76 Identities=11% Similarity=0.023 Sum_probs=50.8
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHhcc-CCCCCchHHHHHH
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD---SNAWASLLSGCKTYKNEQIAERAVKNLWKL-AEEHPAGYVLLSN 662 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~ 662 (712)
..+-..++.+.-+.|+.++|++.++++ +..|. ......++.++...+.+.++..++.+--+. .|.+..+.++-+-
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 334455777777888888888888887 33332 345567778888888888888888886443 3555555554443
Q ss_pred H
Q 005136 663 I 663 (712)
Q Consensus 663 ~ 663 (712)
+
T Consensus 339 L 339 (539)
T PF04184_consen 339 L 339 (539)
T ss_pred H
Confidence 3
|
The molecular function of this protein is uncertain. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.70 E-value=12 Score=40.46 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=21.2
Q ss_pred chHHHHHHHH-----HhhhcCChHHHHHHHHhCCCCCC
Q 005136 587 NGRHYTCVVD-----MLSRSGRLSEAEDFINSMPFEPD 619 (712)
Q Consensus 587 ~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~p~ 619 (712)
+..++..|.+ -+...|++++|++.++++++-|.
T Consensus 499 ~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP~ 536 (613)
T PF04097_consen 499 NRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIPL 536 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-S
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 3445554433 34689999999999999987773
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.61 E-value=5.9 Score=39.59 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC----CCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 618 PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAE----EHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 618 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
....+|..++..+.++|.++.|...+.++....+ ..|.+...-++.++..|+..+|+..++..++.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3467788889999999999999999999987652 25788889999999999999999999988873
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.58 E-value=3.5 Score=37.15 Aligned_cols=58 Identities=12% Similarity=-0.008 Sum_probs=36.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhc------cCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 005136 623 WASLLSGCKTYKNEQIAERAVKNLWK------LAEEHPAGYVLLSNIYASAGRWIDAMNVRKLM 680 (712)
Q Consensus 623 ~~~l~~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 680 (712)
+..+...+.+...+++|-..+.+-.. ..|.--..+...+.++....++..|...++.-
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 34444456666677776666655432 22333345777777788888888888887644
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.33 Score=29.04 Aligned_cols=27 Identities=11% Similarity=-0.075 Sum_probs=18.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 005136 623 WASLLSGCKTYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 623 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 649 (712)
+..+...|.+.|++++|+.++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556677777888888888888885543
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.33 E-value=12 Score=34.78 Aligned_cols=59 Identities=14% Similarity=-0.006 Sum_probs=53.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
......|...|.+.+|.++.++++.++|-+...+-.|..+|...|+--+|.+.++++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 44455688999999999999999999999999999999999999999999999998865
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.24 E-value=14 Score=35.30 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=16.4
Q ss_pred HHHHHhcCCchhHHHHHHHH
Q 005136 661 SNIYASAGRWIDAMNVRKLM 680 (712)
Q Consensus 661 ~~~~~~~g~~~eA~~~~~~~ 680 (712)
+..+.++++|++|.++++-.
T Consensus 253 ~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHH
Confidence 55577899999999999844
|
It is also involved in sporulation []. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.56 Score=41.75 Aligned_cols=87 Identities=11% Similarity=0.072 Sum_probs=62.4
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhH
Q 005136 596 DMLSRSGRLSEAEDFINSM-PFEPDSNA-WASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDA 673 (712)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA 673 (712)
+.|....++..|+..+.+. .+.|...+ |..-+.++.+..+++.+.+-.++++++.|+..-.++.|+..+.....+++|
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 3444556677777766655 55676544 344455566778888888888888888888888888888888888888888
Q ss_pred HHHHHHHHh
Q 005136 674 MNVRKLMTE 682 (712)
Q Consensus 674 ~~~~~~~~~ 682 (712)
+..+++..+
T Consensus 98 I~~Lqra~s 106 (284)
T KOG4642|consen 98 IKVLQRAYS 106 (284)
T ss_pred HHHHHHHHH
Confidence 888887744
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.14 E-value=6.7 Score=34.16 Aligned_cols=91 Identities=12% Similarity=0.023 Sum_probs=55.6
Q ss_pred HHHHHhhhcCChHHHHHHHHhCCCCCCHHHH-----HHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 005136 593 CVVDMLSRSGRLSEAEDFINSMPFEPDSNAW-----ASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASA 667 (712)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 667 (712)
.++..++..|++++|...++..-..|....+ ..+.......|.+++|...+....+..- .+.....-|.++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 3456677777888877777755322322222 3344445677777777776665433211 123455667777778
Q ss_pred CCchhHHHHHHHHHhCC
Q 005136 668 GRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 668 g~~~eA~~~~~~~~~~~ 684 (712)
|+..+|+.-|++.++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888777777765
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.41 Score=27.73 Aligned_cols=31 Identities=13% Similarity=-0.057 Sum_probs=24.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 005136 623 WASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 623 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
+..+..++...|++++|...++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3455666778899999999999999988874
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.15 Score=30.01 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=18.6
Q ss_pred CCC-chHHHHHHHHHhhhcCChHHHH
Q 005136 584 IKP-NGRHYTCVVDMLSRSGRLSEAE 608 (712)
Q Consensus 584 ~~p-~~~~~~~l~~~~~~~g~~~~A~ 608 (712)
+.| +...|..++.+|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 356 6777788888888888877775
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.60 E-value=11 Score=36.31 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=37.2
Q ss_pred HHHHHHHHHCCCCCCH--HHHHHHHHHHhccCc--hHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005136 436 FAVFNEMLLSGEIPNK--STFSSVLCASASVAS--LEKGKDLHGKIIKLGFPYDVFLGTALTDT 495 (712)
Q Consensus 436 ~~~~~~~~~~g~~p~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 495 (712)
...|+.+...|...+. ...+.++..+..... ..++..+++.+.+.|+++....|..+.-.
T Consensus 163 E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 163 EQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 7788888887766543 333444433333222 34677888888888888777776655543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.57 E-value=16 Score=34.83 Aligned_cols=22 Identities=5% Similarity=-0.012 Sum_probs=9.3
Q ss_pred HHhhcCCHHHHHHHHHHHhccCC
Q 005136 629 GCKTYKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 629 ~~~~~g~~~~a~~~~~~~~~~~p 651 (712)
++...|+. +|...+.++.+.+|
T Consensus 244 ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 244 AAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHhcCCH-hHHHHHHHHHhhCC
Confidence 33334442 34444444444444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.56 E-value=0.47 Score=27.75 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=26.3
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 655 AGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 655 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
.++..++.+|...|++++|.+.+++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 47889999999999999999999998774
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.25 E-value=8.5 Score=31.06 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=34.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCC
Q 005136 422 IISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGF 482 (712)
Q Consensus 422 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 482 (712)
.+......|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344555555555557777776642 356667777777777777777777777777766653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.07 E-value=0.5 Score=29.27 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=23.7
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 655 AGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 655 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999998876
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.91 E-value=2 Score=40.28 Aligned_cols=60 Identities=15% Similarity=0.257 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhc
Q 005136 351 VFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDN 410 (712)
Q Consensus 351 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 410 (712)
..++..++..+...|+.+.+...++++...++-+...|..++.+|.+.|+...|+..++.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~ 212 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 456777888888899999999999999988888888888999998888888888555544
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=89.72 E-value=6 Score=29.96 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=34.8
Q ss_pred HHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 005136 125 ISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESG 179 (712)
Q Consensus 125 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 179 (712)
+..+..+|+|++|..+.+....||...|-.+-. .+.|--+.+..-+.+|-.+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 445667777777777777777777777766654 35555565666666666554
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.66 E-value=0.89 Score=42.74 Aligned_cols=96 Identities=13% Similarity=0.129 Sum_probs=64.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhc
Q 005136 524 VRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRS 601 (712)
Q Consensus 524 ~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 601 (712)
.+.|.+.|.+++|+..|...+. +.| |.+++..-..+|.+...+..|..-...... +.- -...|..-+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---Ld~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---LDKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---hhHHHHHHHHHHHHHHHHH
Confidence 4569999999999999998887 677 888888888899999888877766665541 111 122333333333445
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHH
Q 005136 602 GRLSEAEDFINSM-PFEPDSNAWA 624 (712)
Q Consensus 602 g~~~~A~~~~~~~-~~~p~~~~~~ 624 (712)
|+..+|.+-++.. ..+|...-+.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHH
Confidence 6666666666654 5677754443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=89.37 E-value=1.4 Score=41.96 Aligned_cols=217 Identities=11% Similarity=0.016 Sum_probs=101.8
Q ss_pred hccCchHHHHHHHHHHHHc--CCCCchhhHHHHHHHHHhcCChHHHHHHhcc----CC---CCC--cchHHHHHHHHHHc
Q 005136 462 ASVASLEKGKDLHGKIIKL--GFPYDVFLGTALTDTYAKSGDIESSRRVFDR----MP---DKN--EISWTVMVRGLAES 530 (712)
Q Consensus 462 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~---~~~--~~~~~~l~~~~~~~ 530 (712)
....+.+++...|...... +......++..+..+..+.|.++++...--. .. +.+ ...|..+.+++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777665432 1122334455566666666666665443211 11 111 12334444444444
Q ss_pred CChHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCC--CC--chHHHHHHHHHhhhcC
Q 005136 531 GYAKESINLFEEMEKT-SITPN---ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNI--KP--NGRHYTCVVDMLSRSG 602 (712)
Q Consensus 531 ~~~~~A~~~~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g 602 (712)
.++.+++.+-+.-... |..|. .....++..+....+.++++++.|+...+-..- +| ...++..|+..|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4444444444333221 22221 122334445555566667777766665421111 11 2335566666666666
Q ss_pred ChHHHHHHHHhC-------CCCCCH-----HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC-----C----CchHHHHH
Q 005136 603 RLSEAEDFINSM-------PFEPDS-----NAWASLLSGCKTYKNEQIAERAVKNLWKLAEE-----H----PAGYVLLS 661 (712)
Q Consensus 603 ~~~~A~~~~~~~-------~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-----~----~~~~~~l~ 661 (712)
++++|..+..+. ....=. .....+.-++...|..-.|.+..+++.+ - | ......++
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k---lal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK---LALQHGDRALQARCLLCFA 253 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH---HHHHhCChHHHHHHHHHHH
Confidence 666665554443 111111 1112223335556666666666665432 1 1 11233455
Q ss_pred HHHHhcCCchhHHHHHHHHH
Q 005136 662 NIYASAGRWIDAMNVRKLMT 681 (712)
Q Consensus 662 ~~~~~~g~~~eA~~~~~~~~ 681 (712)
.+|...|+.+.|..-|+...
T Consensus 254 DIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHhcccHhHHHHHHHHHH
Confidence 66666666666655555443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.25 E-value=7.1 Score=40.18 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=66.9
Q ss_pred hcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHh
Q 005136 498 KSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNS 577 (712)
Q Consensus 498 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 577 (712)
-.|+++.|..++-.++++ ..+.++..+...|-.++|+++ .+|..- -.....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHh
Confidence 346666666666555522 233445555566655555543 222211 11223456777777777665
Q ss_pred cchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 005136 578 MEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWK 648 (712)
Q Consensus 578 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 648 (712)
.. +..-|..|+++....|++..|.+.|.+.. .|..|+-.+...|+.+....+...+.+
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 54 55667777777777777777777777653 123333344444554444444444333
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.18 E-value=3.4 Score=42.39 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=12.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHH
Q 005136 150 ISWTAAICGFVQNGFSFEALKLFLKL 175 (712)
Q Consensus 150 ~~~~~li~~~~~~g~~~~A~~~~~~m 175 (712)
.-|..|..+....|++..|.+.|.+.
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34445555555555555555554443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.95 E-value=2.1 Score=37.49 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=52.2
Q ss_pred hcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHhcCCchhH
Q 005136 600 RSGRLSEAEDFINSMPFEP--DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE----HPAGYVLLSNIYASAGRWIDA 673 (712)
Q Consensus 600 ~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~eA 673 (712)
+.|+ ++|...|-.+.-.| +.......+..|....|.++++.++-+++++.+. ||+++..|+.++.+.|++++|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4444 56777766663333 2333444555566788899999999999887433 588999999999999998887
Q ss_pred H
Q 005136 674 M 674 (712)
Q Consensus 674 ~ 674 (712)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.74 E-value=14 Score=31.49 Aligned_cols=116 Identities=13% Similarity=0.188 Sum_probs=53.5
Q ss_pred HhcCChHHHHHHhccCCCCCcchHHHHH-----HHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHH--HhcccCcH
Q 005136 497 AKSGDIESSRRVFDRMPDKNEISWTVMV-----RGLAESGYAKESINLFEEMEKTSITPNEL-TILSVLF--ACSHSGLV 568 (712)
Q Consensus 497 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~--~~~~~g~~ 568 (712)
.+.+..++|..-|..+.+.+.-.|..|. ....+.|+...|...|++.-...-.|-.. -...|-. .+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3445555666555555554444443332 22345555666666666555432222221 1112211 23345555
Q ss_pred HHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 569 DKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 569 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
+....-.+-+.. .-.| ....-..|+-+-.+.|++.+|.++|..+
T Consensus 149 ~dV~srvepLa~--d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 149 DDVSSRVEPLAG--DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHhhhccC--CCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 555555554431 1112 3333444555555566666666665554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.71 E-value=12 Score=35.95 Aligned_cols=136 Identities=14% Similarity=0.214 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHhCCCCCccHHHHHHHHHHc--cC----ChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 005136 200 FRLGLSVFGLIFKAGFEKHVSVCNSLITLSLK--MG----EVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIF 273 (712)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 273 (712)
+++...+++.+.+.|+.-+..+|-+....... .. ....+..+++.|++.-+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~----------------------- 134 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHP----------------------- 134 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCc-----------------------
Confidence 44566677777777777777665543333222 11 23345555555543111
Q ss_pred hhCCCCCceeHHHHHHHHHhcCC----hhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCC--hhhHHHHHHHHHHc
Q 005136 274 DEMPERNEVSWSVMIARYNQSGY----PEEAFRLFRQMTRYSFKPNTS--CFSIVLSALASLKA--LRSGMHVHAHVLKI 345 (712)
Q Consensus 274 ~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~ 345 (712)
-+..++-.++..++.. ..++ .+.+..+|+.+...|+..+.. ..+.++..+..... ...+.++++.+.+.
T Consensus 135 -fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~ 211 (297)
T PF13170_consen 135 -FLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN 211 (297)
T ss_pred -cccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc
Confidence 0001222233333322 2222 356777888888878766443 33334433332222 44777888888888
Q ss_pred CCCCcHHHHHHHHHHH
Q 005136 346 GIEKDVFISNALIDLY 361 (712)
Q Consensus 346 ~~~~~~~~~~~l~~~~ 361 (712)
|+++....|..+.-..
T Consensus 212 ~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 212 GVKIKYMHYPTLGLLA 227 (297)
T ss_pred CCccccccccHHHHHH
Confidence 8887777766554433
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.34 E-value=16 Score=33.85 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=36.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHhcccCcHHHHHHHH
Q 005136 523 MVRGLAESGYAKESINLFEEMEKTSITPNELT-------ILSVLFACSHSGLVDKGLKYF 575 (712)
Q Consensus 523 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~-------~~~l~~~~~~~g~~~~a~~~~ 575 (712)
+.+-..+.+++++|+..+.++...|...+..+ ...+...|...|++..-.+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 44556677888999999999888887666543 445666677777665544443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.14 E-value=6.1 Score=37.07 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=47.2
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 005136 294 SGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIG 346 (712)
Q Consensus 294 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 346 (712)
.-++++++.++..=++.|+-||.++++.+|..+.+.+++..|..+.-.|....
T Consensus 113 ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 113 KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 34678999999998999999999999999999999999999999988887654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.12 E-value=4.6 Score=35.31 Aligned_cols=95 Identities=13% Similarity=0.083 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHH--HH-
Q 005136 520 WTVMVRGLAESGYAKESINLFEEMEKTSITPNE--LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYT--CV- 594 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~--~l- 594 (712)
+..+...|++.|+.+.|++.|.++.+....|.. ..+..++......+++..+...+.++........+...-+ ..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 445566666666666777766666664433333 2345555566666666666666655542111111111111 11
Q ss_pred -HHHhhhcCChHHHHHHHHhC
Q 005136 595 -VDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 595 -~~~~~~~g~~~~A~~~~~~~ 614 (712)
+-.+...+++.+|.+.|-..
T Consensus 119 ~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 119 EGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHhchHHHHHHHHHcc
Confidence 22234566777777666655
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.05 E-value=42 Score=36.17 Aligned_cols=140 Identities=5% Similarity=0.027 Sum_probs=87.1
Q ss_pred ChhHHHHHhhcCcCCCCCC---chhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHH
Q 005136 1 MKASLRSLFSINPETSFNS---YIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANE 77 (712)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 77 (712)
|+|||++-+.. .|.+| -.......|..+...|++.+|-.+.-.|.. -+...|...+.-+...+.......
T Consensus 372 yeeAl~~~k~~---~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l~~Ia~ 444 (846)
T KOG2066|consen 372 YEEALDAAKAS---IGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQLTDIAP 444 (846)
T ss_pred HHHHHHHHHhc---cCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccccchhhc
Confidence 57788877764 55555 345677788888889999999888877773 356677777777777776544433
Q ss_pred HHhhcCC-CCcchHHHHHHHHHhcCChHHHHHHHhhCCC--------------------CChhHHHHHHHHHHccCChHH
Q 005136 78 IVKDLNG-FDLVVHNCMINANIQWGNLEEAQRLFDGMPE--------------------RNEVSWTALISGFMKHGRVEE 136 (712)
Q Consensus 78 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------~~~~~~~~l~~~~~~~g~~~~ 136 (712)
++-.-++ .+..+|..++..+.. .+...-..+..+-+. .+......|+..|...+++++
T Consensus 445 ~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~ 523 (846)
T KOG2066|consen 445 YLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEK 523 (846)
T ss_pred cCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHH
Confidence 3322222 355688888877776 333333333322221 122233457777778888888
Q ss_pred HHHHhhhCCCCC
Q 005136 137 SMWYFERNPFQN 148 (712)
Q Consensus 137 a~~~~~~~~~~~ 148 (712)
|.+++-...+++
T Consensus 524 Al~~ylklk~~~ 535 (846)
T KOG2066|consen 524 ALPIYLKLQDKD 535 (846)
T ss_pred HHHHHHhccChH
Confidence 887776665443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=87.95 E-value=1.2 Score=33.58 Aligned_cols=41 Identities=10% Similarity=0.158 Sum_probs=21.7
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 643 VKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 643 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
+++.++.+|++....+.|+..+...|++++|++.+-.+.+.
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44445555555555555555555555555555555555543
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=87.80 E-value=1.8 Score=28.63 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=24.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 625 SLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 625 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
.+.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4455688999999999999999999999754
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.74 E-value=2.8 Score=39.39 Aligned_cols=62 Identities=21% Similarity=0.120 Sum_probs=49.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 623 WASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 623 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
...+-.+|.+.++++.|.+..++++.+.|++|.-...-|.+|.+.|.+..|..=++..++.-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 34555567888888888888888888888888888888888888888888888777776653
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=87.67 E-value=6.4 Score=39.15 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=56.3
Q ss_pred HcCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHH
Q 005136 529 ESGYAKESIN-LFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEA 607 (712)
Q Consensus 529 ~~~~~~~A~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 607 (712)
..|+.-.|-+ ++..++...-.|+...+...+ +...|+++.+...+..... -+.....+..++++.....|+|++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 3455444433 333333332334333332222 3455666666666555441 1222344555556666666666666
Q ss_pred HHHHHhC-C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 608 EDFINSM-P-FEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 608 ~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
...-.-| + .-.++.............|-++++...+++++.++|+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 6665555 1 1122222222222234455566666666666665554
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=87.65 E-value=3.7 Score=33.17 Aligned_cols=70 Identities=16% Similarity=0.102 Sum_probs=50.0
Q ss_pred CCchHHHHHHHHHhhhcCCh---HHHHHHHHhC-C-CCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 585 KPNGRHYTCVVDMLSRSGRL---SEAEDFINSM-P-FEPD--SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 585 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
.++..+--.++.++.+..+. .+.+.+++++ + ..|+ ......+.-++.+.++++.+.++++..++.+|+|+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 56666777788888876654 4556677766 2 3333 33344555568899999999999999999999865
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.60 E-value=4.2 Score=36.58 Aligned_cols=97 Identities=11% Similarity=0.005 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC---------CCCCCHHHH-----------HHHHHHHhhcCCHHHHHHHHHHHh
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM---------PFEPDSNAW-----------ASLLSGCKTYKNEQIAERAVKNLW 647 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~~~-----------~~l~~~~~~~g~~~~a~~~~~~~~ 647 (712)
+.+...-++-+.+.|++.+|...|.+. +.+|...-| .++..++...|++-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 334444556666777777766655543 334443333 334445567888888888888888
Q ss_pred ccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 648 KLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 648 ~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
..+|+|..+|+.-+++....=+..||..=+.++++-.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 8899988888888888888888888888888777644
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=87.56 E-value=3 Score=37.76 Aligned_cols=65 Identities=9% Similarity=0.061 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHH-------HHhccC--CC----CCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 620 SNAWASLLSGCKTYKNEQIAERAVK-------NLWKLA--EE----HPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 620 ~~~~~~l~~~~~~~g~~~~a~~~~~-------~~~~~~--p~----~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
...+..+.+.|...|+.+.-..+++ ++++.. |. ...+.+.+|.+..+.|++++|.+++.+++..+
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3445556666777777554444444 444332 22 23577889999999999999999999998754
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=87.20 E-value=1.1 Score=28.18 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 658 VLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 658 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
..|+.+|...|+.+.|+++++++++.|-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4689999999999999999999987653
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.17 E-value=52 Score=36.22 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=67.6
Q ss_pred HHcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchh---cCCCC-chHHHHHHHHHhh
Q 005136 528 AESGYAKESINLFEEMEKT----SITPNELTILSVLFACSHSGLVDKGLKYFNSMEPI---YNIKP-NGRHYTCVVDMLS 599 (712)
Q Consensus 528 ~~~~~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~ 599 (712)
...|+++.|.++.+..... -..+....+..+..+..-.|++++|..+.+...+. ++..+ ...+...-...+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3456666666666655542 01122233445555555667777776665554421 11111 1112222233445
Q ss_pred hcCCh--HHHHHHHHhC-----CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhcc----CCCCC---chHHHHH
Q 005136 600 RSGRL--SEAEDFINSM-----PFEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKL----AEEHP---AGYVLLS 661 (712)
Q Consensus 600 ~~g~~--~~A~~~~~~~-----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~---~~~~~l~ 661 (712)
..|+. .+....+... +.+|. ..+...+++++.+ .+.+..-....++. .|..- ..+..|+
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA 625 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLA 625 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHH
Confidence 55522 2222222222 11222 2333334444333 33343333333332 22211 1223566
Q ss_pred HHHHhcCCchhHHHHHHHHHhC
Q 005136 662 NIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 662 ~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
.+....|+.++|...++++..-
T Consensus 626 ~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 626 ELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHhcCCHHHHHHHHHHHHHH
Confidence 6677777777777777766553
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.16 E-value=20 Score=31.67 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=52.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHc---CCCCcHHHHHHHHHHHHhcCCh
Q 005136 291 YNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKI---GIEKDVFISNALIDLYSKCGET 367 (712)
Q Consensus 291 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 367 (712)
+.+.|+ +.|.+.|-.+...+..-++.....+...|. ..+.+++..++...++. +-.+|+.++.+|+..|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 677777777776665555555444444444 56778888887777664 2356778888888888888887
Q ss_pred HHHH
Q 005136 368 KDGR 371 (712)
Q Consensus 368 ~~A~ 371 (712)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7764
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.15 E-value=6.1 Score=34.58 Aligned_cols=64 Identities=11% Similarity=0.030 Sum_probs=45.0
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhcccchHHHHHHHHHHHHh
Q 005136 150 ISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNE--VTFSSICKACAEINDFRLGLSVFGLIFKA 213 (712)
Q Consensus 150 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (712)
..+..+...|.+.|+.+.|++.|.++.+....|.. ..+..+|+.....+++..+...+......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35667777788888888888888888776444333 34566777777778888877777666543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.59 E-value=26 Score=32.22 Aligned_cols=121 Identities=21% Similarity=0.345 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHh-----cccCcHHHHHH-HHHhcchhcC--CCCc--
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSI-TPNELTILSVLFAC-----SHSGLVDKGLK-YFNSMEPIYN--IKPN-- 587 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~-----~~~g~~~~a~~-~~~~~~~~~~--~~p~-- 587 (712)
.|..-+..|...++-.....++++...-.- -|. .....+++-| .+.|.+++|.. +|+... .+. -.|.
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH-PlImGvIRECGGKMHlreg~fe~AhTDFFEAFK-NYDEsGspRRt 270 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH-PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK-NYDESGSPRRT 270 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc-hHHHhHHHHcCCccccccchHHHHHhHHHHHHh-cccccCCcchh
Confidence 455667777777777777777777654222 233 3334445544 35688888765 444443 221 1232
Q ss_pred -hHHHHHHHHHhhhcCC--h--HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 005136 588 -GRHYTCVVDMLSRSGR--L--SEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNL 646 (712)
Q Consensus 588 -~~~~~~l~~~~~~~g~--~--~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 646 (712)
.--|..|++.+.+.|- + ++|. -.+..|.......++.+| +.++..+.+++++.-
T Consensus 271 tCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aY-Q~NdI~eFE~Il~~~ 329 (440)
T KOG1464|consen 271 TCLKYLVLANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAY-QNNDIIEFERILKSN 329 (440)
T ss_pred HHHHHHHHHHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHH-hcccHHHHHHHHHhh
Confidence 2235556666766652 1 1110 012234445556677766 456666666655543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.48 E-value=1.2 Score=38.11 Aligned_cols=107 Identities=14% Similarity=0.115 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhc---CChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHhhcC
Q 005136 568 VDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRS---GRLSEAEDFINSM--------PFEPD-SNAWASLLSGCKTYK 634 (712)
Q Consensus 568 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~g 634 (712)
++.|.+.++... ...| |...++.-+.++... ....++.+++++. .+.|+ ...+..+..++...+
T Consensus 7 FE~ark~aea~y---~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAY---AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHH---HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 445555555433 2255 667666666665543 3333444444433 35666 566666766665433
Q ss_pred -----------CHHHHHHHHHHHhccCCCCCchHHHHHHHHH-hcCCchhHHHHHHHHHhCCC
Q 005136 635 -----------NEQIAERAVKNLWKLAEEHPAGYVLLSNIYA-SAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 635 -----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~eA~~~~~~~~~~~~ 685 (712)
.+++|...|+++.+.+|+|. +|. ...-..+|-++..++.+.+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne--------~Y~ksLe~~~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDEDPNNE--------LYRKSLEMAAKAPELHMEIHKQGL 138 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH-TT-H--------HHHHHHHHHHTHHHHHHHHHHSSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHhhHHHHHHHHHHHh
Confidence 25667777777777888863 333 22344566666666655543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=86.05 E-value=1.1 Score=25.14 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=20.3
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 655 AGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 655 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
.++..++.++...|++++|...+++.++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35667777777777777777777766653
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.90 E-value=58 Score=35.52 Aligned_cols=180 Identities=12% Similarity=0.126 Sum_probs=88.9
Q ss_pred HHHHHHHHHH-hCCCCCC--HHHHHHHHHHHh-ccCChhhHHHHHHHHHHcCCCCcH-----HHHHHHHHHHHhcCChHH
Q 005136 299 EAFRLFRQMT-RYSFKPN--TSCFSIVLSALA-SLKALRSGMHVHAHVLKIGIEKDV-----FISNALIDLYSKCGETKD 369 (712)
Q Consensus 299 ~a~~~~~~m~-~~~~~p~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~ 369 (712)
.|++.++... ...++|. ..++..+...+. ...+++.|+..+++.....-.++. .....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 3455555554 3233332 223344444443 456777777777765544322221 12234456666666555
Q ss_pred HHHHHHhhhcCCC-----CceeeHHHH-HHHHhccCChhhHHHHhhcCCC-----CC--cccHHHHHHHH--HhcCChhH
Q 005136 370 GRLVFDSIVEKDV-----AHVVSWNSM-IGGYGLNGQMEEAKELFDNMPK-----RN--DVSWSAIISGY--LEHKQFDL 434 (712)
Q Consensus 370 A~~~~~~~~~~~~-----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~l~~~~--~~~~~~~~ 434 (712)
|...+++..+.-. +....+..+ +..+...++...|.+.++.+.. .+ ..++..++.+. ...+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 6666666443221 111222222 1222223677777777766542 12 22333333333 34455666
Q ss_pred HHHHHHHHHHCC---------CCCCHHHHHHHHHHHh--ccCchHHHHHHHHHHHH
Q 005136 435 VFAVFNEMLLSG---------EIPNKSTFSSVLCASA--SVASLEKGKDLHGKIIK 479 (712)
Q Consensus 435 a~~~~~~~~~~g---------~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 479 (712)
+.+.++++.... ..|...++..+++.++ ..|+++.+...++.+.+
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677776663322 1345566666666544 56777677766666553
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.76 E-value=5.3 Score=33.06 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=50.3
Q ss_pred HHHHHHHHH---hcccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCChHHHHHHHHhCCCCC-CHHHHHHHH
Q 005136 553 LTILSVLFA---CSHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRLSEAEDFINSMPFEP-DSNAWASLL 627 (712)
Q Consensus 553 ~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~ 627 (712)
...+.|+.. -...++.+++..+++.+. -+.|+ ...-..-+..+...|+|.+|..+|++....+ ....-..+.
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 344444443 345889999999999887 56774 4444455777899999999999999995444 333333344
Q ss_pred HHH
Q 005136 628 SGC 630 (712)
Q Consensus 628 ~~~ 630 (712)
..|
T Consensus 85 A~C 87 (153)
T TIGR02561 85 ALC 87 (153)
T ss_pred HHH
Confidence 334
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.08 E-value=1.9 Score=26.53 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 005136 621 NAWASLLSGCKTYKNEQIAERAVKNLWK 648 (712)
Q Consensus 621 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 648 (712)
.++..+...|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455666666666777777776666654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.45 E-value=29 Score=30.91 Aligned_cols=79 Identities=18% Similarity=0.042 Sum_probs=47.7
Q ss_pred HHhcCCChhHhHHHHhhc--CCCC-cchHHHHHHHHHhcCChHHHHHHHhhCCCCChh-HHHH--HHHHHHccCChHHHH
Q 005136 65 MYLGSRKSLEANEIVKDL--NGFD-LVVHNCMINANIQWGNLEEAQRLFDGMPERNEV-SWTA--LISGFMKHGRVEESM 138 (712)
Q Consensus 65 ~~~~~~~~~~a~~~~~~~--~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~--l~~~~~~~g~~~~a~ 138 (712)
.|...|-+.-|+--|.+. .+|+ +.+||-++.-+...|+++.|.+.|+...+-|+. -|.. -.-.+---|+++-|.
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhH
Confidence 455555555555555554 2343 468888888888888888888888888775443 1221 122233456777766
Q ss_pred HHhhh
Q 005136 139 WYFER 143 (712)
Q Consensus 139 ~~~~~ 143 (712)
+-|..
T Consensus 154 ~d~~~ 158 (297)
T COG4785 154 DDLLA 158 (297)
T ss_pred HHHHH
Confidence 55443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.31 E-value=51 Score=33.59 Aligned_cols=393 Identities=10% Similarity=0.044 Sum_probs=189.3
Q ss_pred CCceeHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHH
Q 005136 279 RNEVSWSVMIARYNQSGYPEEAFRLFRQMTR-YSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNAL 357 (712)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 357 (712)
.|+..|...+..+.+.+.+.+.-.+|.+|.. ++-.|+...+...- -+....+++.|..++..-++.+. .++..|...
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w-efe~n~ni~saRalflrgLR~np-dsp~Lw~ey 180 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW-EFEINLNIESARALFLRGLRFNP-DSPKLWKEY 180 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh-HHhhccchHHHHHHHHHHhhcCC-CChHHHHHH
Confidence 3888899988888888889999999999976 34455555444332 22333448889998888777642 234444443
Q ss_pred HHHHHh----c--------CChHHH-HHHHHh--hhcCCCCceee-------HH-HHHHHHhccCChhhHHHHhhcCC--
Q 005136 358 IDLYSK----C--------GETKDG-RLVFDS--IVEKDVAHVVS-------WN-SMIGGYGLNGQMEEAKELFDNMP-- 412 (712)
Q Consensus 358 ~~~~~~----~--------g~~~~A-~~~~~~--~~~~~~~~~~~-------~~-~l~~~~~~~~~~~~a~~~~~~~~-- 412 (712)
.++-.. . ++.+.- .++-.. .-....++... .+ ......-..++..+ .+.+.+.
T Consensus 181 frmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k--~i~d~~~~~ 258 (568)
T KOG2396|consen 181 FRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQK--NIIDDLQSK 258 (568)
T ss_pred HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHH--HHHHHHhcc
Confidence 332111 0 000000 000000 00000000000 00 00000000011111 1111111
Q ss_pred -CCCcccHHHHHHHH----Hh---------------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------c
Q 005136 413 -KRNDVSWSAIISGY----LE---------------HKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVA------S 466 (712)
Q Consensus 413 -~~~~~~~~~l~~~~----~~---------------~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~------~ 466 (712)
..++.+|..+..-. .+ ....+....+|++..+. .|+...+...|..|...- .
T Consensus 259 ~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~ 336 (568)
T KOG2396|consen 259 APDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKR 336 (568)
T ss_pred CCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhH
Confidence 12344443332211 11 11223445666666553 456666666666654332 2
Q ss_pred hHHHHHHHHHHHHc-CCCC-chhhHHHHHHHHHhcCChHH-HHHHhccCCCCCcchHHHHHHHHHHcC-ChHHH-HHHHH
Q 005136 467 LEKGKDLHGKIIKL-GFPY-DVFLGTALTDTYAKSGDIES-SRRVFDRMPDKNEISWTVMVRGLAESG-YAKES-INLFE 541 (712)
Q Consensus 467 ~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A-~~~~~ 541 (712)
......+++...+. +..+ ....|..+.-++.......+ |..+..+....+...|-.-+....... +++-- .+.+.
T Consensus 337 I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n 416 (568)
T KOG2396|consen 337 ILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFN 416 (568)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 33334444444432 2222 34445555555555444333 333333444555555555444444221 22111 11122
Q ss_pred HHHHcCCCCCHHHHHHHH-HHhcccCcHHHHHHHHHhcchhcCCCCchHH-HHHHHHHhhhcCChHHHHHHHHhCCC--C
Q 005136 542 EMEKTSITPNELTILSVL-FACSHSGLVDKGLKYFNSMEPIYNIKPNGRH-YTCVVDMLSRSGRLSEAEDFINSMPF--E 617 (712)
Q Consensus 542 ~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 617 (712)
.....-..+-...|+... ..+....-.+..+..+..+. .|+..+ -+.+.+.+.+.|-..+|...+.++.. .
T Consensus 417 ~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~-----~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp 491 (568)
T KOG2396|consen 417 HLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVI-----GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPP 491 (568)
T ss_pred HHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhc-----CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCC
Confidence 222221222223333333 01111111222233333333 454433 34677778888999999999998832 3
Q ss_pred CCHHHHHHHHHH--HhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 618 PDSNAWASLLSG--CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 618 p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
|+...+..++.. -...-+...+...|+.++.....++..+..+...-...|..+-+-.++.+..+
T Consensus 492 ~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 492 FSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 455666666554 22333477888888888877767788888888777788888888887776654
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.96 E-value=7.7 Score=29.25 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHH
Q 005136 298 EEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALI 358 (712)
Q Consensus 298 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 358 (712)
-++.+-++.+....+.|++......+++|.+.+++..|.++++-++... ..+...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 3455666666677788888888888888888888888888888776432 11333454443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=83.67 E-value=2.5 Score=23.63 Aligned_cols=31 Identities=13% Similarity=-0.023 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 622 AWASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 622 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
.+..+...+...|+++.|...++++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455666677788888888888888877765
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.56 E-value=61 Score=33.15 Aligned_cols=37 Identities=14% Similarity=-0.005 Sum_probs=19.0
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 628 SGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 628 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
.-|....++.+|++++..+++.+..+..+--.++.-+
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 3355555566666666655555554444444444433
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.38 E-value=4.2 Score=41.58 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=64.8
Q ss_pred cccCcHHHHHHHHHhcchhcCCCC--chHHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHhhcCCHHH
Q 005136 563 SHSGLVDKGLKYFNSMEPIYNIKP--NGRHYTCVVDMLSRSGRLSEAEDFINSM-P-FEPDSNAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 563 ~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~ 638 (712)
...|+...|...+.... ...| .......|++.+.+.|...+|-.++... . ....+.++..+.+++....+.+.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 34677777777777665 2344 2334456667777777767777666543 2 12334555666666777778888
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 639 AERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 639 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
|++.++.++++.|+++.+-..|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 888888888888887777776665544
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.23 E-value=15 Score=27.78 Aligned_cols=63 Identities=8% Similarity=0.017 Sum_probs=48.9
Q ss_pred ChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHH
Q 005136 331 ALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIG 393 (712)
Q Consensus 331 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 393 (712)
+.-++.+-++.+....+.|++.+..+.+++|-+.+++..|.++|+.++.+.......|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 445566677777777889999999999999999999999999999887555333445655554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=82.17 E-value=2.4 Score=30.51 Aligned_cols=49 Identities=8% Similarity=0.057 Sum_probs=38.2
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCCchHH---HHHHHHHhcCCchhHHHHHH
Q 005136 630 CKTYKNEQIAERAVKNLWKLAEEHPAGYV---LLSNIYASAGRWIDAMNVRK 678 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~eA~~~~~ 678 (712)
+..+++.++|...++++++..++.+.-+. .|+.+|...|++++++.+--
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788899999999999998877665444 55566888999999988743
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.15 E-value=42 Score=30.97 Aligned_cols=179 Identities=10% Similarity=0.064 Sum_probs=101.9
Q ss_pred ChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCchHHHHHHHHHHHH---cC--CCCchhhHHHHHHHHHhcCCh
Q 005136 431 QFDLVFAVFNEMLLSGEI---PNKSTFSSVLCASASVASLEKGKDLHGKIIK---LG--FPYDVFLGTALTDTYAKSGDI 502 (712)
Q Consensus 431 ~~~~a~~~~~~~~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~ 502 (712)
.+++|+.-|++.++.... ........++....+.+++++....+.++.. +. -..+....+.+++......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 455556666665543211 1223444556666677777766666665542 11 123444555666655555554
Q ss_pred HHHHHHhccCC-----CCCc----chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC----C-------HHHHHHHHHHh
Q 005136 503 ESSRRVFDRMP-----DKNE----ISWTVMVRGLAESGYAKESINLFEEMEKTSITP----N-------ELTILSVLFAC 562 (712)
Q Consensus 503 ~~A~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p----~-------~~~~~~l~~~~ 562 (712)
+--.++++.-. .++. .+-..|...|...+.+....++++++...-... | ...|..=+..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 44444443321 1222 233557778888888888888888886532111 1 13466666777
Q ss_pred cccCcHHHHHHHHHhcchhcCCCCchHHHHHH----HHHhhhcCChHHHHH
Q 005136 563 SHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCV----VDMLSRSGRLSEAED 609 (712)
Q Consensus 563 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~g~~~~A~~ 609 (712)
....+-.+...+|++...-...-|.+.....+ +..+.+.|+|++|-.
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 77777777888888766433445655544433 345678899998864
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.11 E-value=6.6 Score=29.95 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHH
Q 005136 535 ESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVD 596 (712)
Q Consensus 535 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 596 (712)
+..+-+..+....+.|+.......+.+|.+.+|+..|+++|+.++.+.+-. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 555666666666788999999999999999999999999999888654433 225555543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=81.88 E-value=6.3 Score=31.89 Aligned_cols=68 Identities=10% Similarity=0.006 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHhhcC---CHHHHHHHHHHHhc-cCCC-CCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 617 EPDSNAWASLLSGCKTYK---NEQIAERAVKNLWK-LAEE-HPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 617 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
.++..+-..+.+++.+.. +..+.+.+++.+++ -.|+ ..+..+.|+-.+++.|+|++++.+.+.+++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 566677777888876655 45677888888886 4455 45678889999999999999999999988754
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.55 E-value=5.5 Score=35.27 Aligned_cols=64 Identities=11% Similarity=0.019 Sum_probs=48.7
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 591 YTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
.+.-+..+.+.++.++|+...+.- +.+|. ...-..++..++-.|++++|...++-+-++.|+..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344456777888999998887654 55665 45556677778889999999999999988888853
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.28 E-value=42 Score=30.42 Aligned_cols=17 Identities=6% Similarity=0.223 Sum_probs=10.3
Q ss_pred cccCcHHHHHHHHHhcc
Q 005136 563 SHSGLVDKGLKYFNSME 579 (712)
Q Consensus 563 ~~~g~~~~a~~~~~~~~ 579 (712)
...+++.+|+.+|+++.
T Consensus 165 a~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666666666655
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.85 E-value=11 Score=28.78 Aligned_cols=60 Identities=17% Similarity=0.286 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 005136 167 EALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLIT 227 (712)
Q Consensus 167 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 227 (712)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++..- .+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 566667777777888999999999999999999999999998876542 233336666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=80.57 E-value=65 Score=32.16 Aligned_cols=85 Identities=12% Similarity=0.010 Sum_probs=41.2
Q ss_pred HhhhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHH-HhhcCCHHHHHHHHHHHhccCC-----CCCchHHHHHHHHHhc
Q 005136 597 MLSRSGRLSEAEDFINSM-PFEPD--SNAWASLLSG-CKTYKNEQIAERAVKNLWKLAE-----EHPAGYVLLSNIYASA 667 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~ 667 (712)
.+.+.|-+..|.++.+-+ ...|+ +.....++.. ..+.++++-.+++++....... .-|...+..+-++...
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l 191 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRL 191 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHh
Confidence 344555555555555443 22222 2222222333 2344555555555544333100 1245666666666667
Q ss_pred CCc---------------hhHHHHHHHHH
Q 005136 668 GRW---------------IDAMNVRKLMT 681 (712)
Q Consensus 668 g~~---------------~eA~~~~~~~~ 681 (712)
++. ++|.+.+.+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai 220 (360)
T PF04910_consen 192 EKEESSQSSAQSGRSENSESADEALQKAI 220 (360)
T ss_pred cCccccccccccccccchhHHHHHHHHHH
Confidence 666 67777766644
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=80.54 E-value=93 Score=33.94 Aligned_cols=84 Identities=11% Similarity=0.102 Sum_probs=44.5
Q ss_pred CChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHh--ccCChhhHHHHHHHHHHcCC---------CCcHHHHHHHHHH
Q 005136 295 GYPEEAFRLFRQMTRYS---FKPNTSCFSIVLSALA--SLKALRSGMHVHAHVLKIGI---------EKDVFISNALIDL 360 (712)
Q Consensus 295 ~~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~ 360 (712)
+++..|++.++.+...- ..|-...+..++.+.. +.+..+.+.+.++.+..... .|...++..+++.
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 67777777777765422 2344444445555444 33445556666555533211 2344555555554
Q ss_pred H--HhcCChHHHHHHHHhhh
Q 005136 361 Y--SKCGETKDGRLVFDSIV 378 (712)
Q Consensus 361 ~--~~~g~~~~A~~~~~~~~ 378 (712)
+ ...|+++.+...++++.
T Consensus 233 ~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 233 CCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 3 45566666666655543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.44 E-value=4.1 Score=34.94 Aligned_cols=91 Identities=12% Similarity=0.123 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH---hcccCcHHHHHHHHHhcchhc----CCCCc-hHHHHHHHHHhhhcC--
Q 005136 533 AKESINLFEEMEKTSITPNELTILSVLFA---CSHSGLVDKGLKYFNSMEPIY----NIKPN-GRHYTCVVDMLSRSG-- 602 (712)
Q Consensus 533 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g-- 602 (712)
++.|.+.++.-...+ +.|...++.-..+ +.+..+..++.+++++...++ .+.|+ ..++.+++.+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 566777777655531 3344444444444 445566677888888776443 46784 678888998887654
Q ss_pred --ChHHHHHHHHh-------C-CCCCCHHHHH
Q 005136 603 --RLSEAEDFINS-------M-PFEPDSNAWA 624 (712)
Q Consensus 603 --~~~~A~~~~~~-------~-~~~p~~~~~~ 624 (712)
+..+|..+|++ . ..+|+...|+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 33344444444 3 3467766654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=80.39 E-value=57 Score=32.56 Aligned_cols=96 Identities=15% Similarity=0.215 Sum_probs=65.9
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC----------CC-----------------CC-CHHHH---HHHHHHHhhcCC
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM----------PF-----------------EP-DSNAW---ASLLSGCKTYKN 635 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~-----------------~p-~~~~~---~~l~~~~~~~g~ 635 (712)
.+.++..+...+.+.|+.+.|.+++++. .. .+ +...| ...+..+.+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 5666666666666666666666655543 01 11 22222 334455678999
Q ss_pred HHHHHHHHHHHhccCCC-CCchHHHHHHHHH-hcCCchhHHHHHHHHHh
Q 005136 636 EQIAERAVKNLWKLAEE-HPAGYVLLSNIYA-SAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 636 ~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~eA~~~~~~~~~ 682 (712)
+..|.++.+-++.++|. ||-.....+..|+ +.++++--+++.+....
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 99999999999999999 8877666666665 77888878888776655
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 6e-10
Identities = 85/518 (16%), Positives = 152/518 (29%), Gaps = 179/518 (34%)
Query: 21 IETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVK 80
+ L L+ ++N++ + G + LGS K+ A ++
Sbjct: 140 LRQALLELRP--AKNVL-----IDG-------------------V-LGSGKTWVALDVCL 172
Query: 81 DLNGFDLVVHNCMINANIQW---GN-------LEEAQRLF-----------DGM--PERN 117
+ + C ++ I W N LE Q+L D +
Sbjct: 173 S---YKVQ---CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 118 EVSWTALISGFMKHGRVEESM------WYFER-NPFQN-----VISWTAAICGFVQN--- 162
S A + +K E + + N F + + + F+
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 163 ----------GFS-FEALKLFLKLLESGVK--PNEVTFSSICKACAEINDFRLGLSVFGL 209
+ E L LK L+ + P EV N LS+
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-----LT----TNP--RRLSIIAE 335
Query: 210 IFKAGFE-----KHVSV--CNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVIL--DVF 260
+ G KHV+ ++I SL + E R +FDR+ +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL---------SVFPPSAH 386
Query: 261 IEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYS-----FKPN 315
I L + W +I + + ++ +YS K +
Sbjct: 387 IPTILL--------------SLIWFDVI--------KSDVMVVVNKLHKYSLVEKQPKES 424
Query: 316 T-SCFSIVLSALASLKALRSGMH---VHAHVLKIGIEKDVFISNALIDLY---------S 362
T S SI L L+ + +H V + + + D I L D Y
Sbjct: 425 TISIPSIYLELKVKLENEYA-LHRSIVDHYNIPKTFDSDDLIPPYL-DQYFYSHIGHHLK 482
Query: 363 KCGETKDG----RLVFD-SIVEKDVAHV-VSWNSMIGGYGLNGQMEEAKE-LFDNMPKRN 415
+ + D +E+ + H +WN+ Q++ K + DN PK
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY- 541
Query: 416 DVSWSAIISGYLE-----------HKQFDLV-FAVFNE 441
+++ L+ K DL+ A+ E
Sbjct: 542 ----ERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 3e-08
Identities = 105/637 (16%), Positives = 182/637 (28%), Gaps = 219/637 (34%)
Query: 199 DFRLG---------LSVFGLIFKAGFE-KHVSVCNSLITLSLKMGEVDLARSVFDRMEKR 248
DF G LSVF F F+ K V D+ +S+ + E
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ---------------DMPKSILSKEE-- 50
Query: 249 DVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVS----------------WSVMIARYN 292
I + + + R+F + + E S +
Sbjct: 51 -------IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 293 QSGYPEEAF-----RLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGI 347
Q + RL+ ++ K N S L +L LR +V + G
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFA-KYNVSRLQPYLKLRQALLELRPAKNVLIDGVL-GS 161
Query: 348 EKDVFISNALIDLYSKCGETKDGRLVF----------DSIVEK--DVAHVVSWNSMIGG- 394
K + + +C D + +F ++++E + + + N
Sbjct: 162 GKTWVALDVCLSYKVQC--KMDFK-IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 395 ------YGLNGQMEEAKELFDNMPKRN------DVSWSA-IISGYLEHKQFDLVFAVFN- 440
++ E + L + P N +V +A F+ +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAW------NAFN-----LSC 266
Query: 441 EMLLSGEIPNKSTFSSVLCASASVASLE---------KGKDLHGKIIKL----------- 480
++LL+ K + A+ + SL+ + K L K +
Sbjct: 267 KILLTTR--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 481 GFPYDVFL-------GTALTDTYAKSGD------IESS---------RRVFDRM---PDK 515
P + + G A D + IESS R++FDR+ P
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 516 NEISWTVMVRGLAESGYAKESINLFEEMEKTSIT---PNELTI----LSVLFACS----- 563
I ++ + + + + ++ K S+ P E TI + +
Sbjct: 385 AHIPTILLSLIWFDVIK-SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 564 --HSGLVDK--GLKYF--NSMEP------IYN-IKPNGRHYTCVVDMLSRSGRLSEAEDF 610
H +VD K F + + P Y+ I G H L F
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI---GHH-------LKNIEHPERMTLF 493
Query: 611 INSMPF----------EPDSNAW------ASLLSGCKTYK-----NEQIAERAVKNLWKL 649
M F DS AW + L K YK N+ ER V +
Sbjct: 494 --RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 650 ---AEEH----PAGYVL---LSN----IYASAGRWID 672
EE+ +L L I+ A + +
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 9e-07
Identities = 30/254 (11%), Positives = 73/254 (28%), Gaps = 56/254 (22%)
Query: 471 KDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAES 530
+ K + P + + + + R+F + K E V +
Sbjct: 31 DNFDCKDV-QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 531 GYAKESINLFEEMEKTSITPNELTILSVLFACSHSGL---VDKGLKYF-NSMEPI----- 581
Y F M + ++++ ++ L KY + ++P
Sbjct: 90 NYK------F-LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 582 --YNIKPN-----------GRHYTCVVDMLSRS----------------GRLSEAEDFI- 611
++P G+ T V + S + E +
Sbjct: 143 ALLELRPAKNVLIDGVLGSGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 612 --NSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGR 669
+ ++ D N + + ++ L K + + ++L N+ + +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-KPYENCLLVLLNVQNA--K 257
Query: 670 WIDAMNV--RKLMT 681
+A N+ + L+T
Sbjct: 258 AWNAFNLSCKILLT 271
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.8 bits (143), Expect = 3e-09
Identities = 30/273 (10%), Positives = 77/273 (28%), Gaps = 18/273 (6%)
Query: 177 ESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVD 236
++ P E + + + + + G +A + L ++
Sbjct: 85 QAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLP 144
Query: 237 LARSVFDRMEKR-------DVVSWTVILDVFIEMGDLGEARRIFDEMPER----NEVSWS 285
LA + + + + ++ + G E + + + + +S++
Sbjct: 145 LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204
Query: 286 VMIARYNQSG-YPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVH-AHVL 343
+ + R QM++ K +++LS L++ V L
Sbjct: 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSL 264
Query: 344 KIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHV-----VSWNSMIGGYGLN 398
+ V S L D+Y+K G +L + + ++ +
Sbjct: 265 PPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKP 324
Query: 399 GQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQ 431
+ + K W + L +
Sbjct: 325 TLPSKEVKHARKTLKTLRDQWEKALCRALRETK 357
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 55.2 bits (131), Expect = 7e-08
Identities = 19/178 (10%), Positives = 51/178 (28%), Gaps = 7/178 (3%)
Query: 449 PNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRV 508
P + + +L + SL+ + G+ + A + + + +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 509 FDRMPDKNE-------ISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFA 561
+ + + ++ G A G KE + + ++ +TP+ L+ + L
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 562 CSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPD 619
++ +K ++ R+ L + P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQ 267
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 48.3 bits (113), Expect = 9e-06
Identities = 12/140 (8%), Positives = 40/140 (28%), Gaps = 8/140 (5%)
Query: 176 LESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIF---KAGFEKHVSVCNSLITLSLKM 232
++ + + + K C + L + + + + + N+++ +
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 233 GEVDLARSVFDRMEKR----DVVSWTVILDVFIEMGDLGEA-RRIFDEMPERNEVSWSVM 287
G V ++ D++S+ L R ++M + ++
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 288 IARYNQSGYPEEAFRLFRQM 307
A + ++
Sbjct: 239 TAVLLSEEDRATVLKAVHKV 258
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.8 bits (104), Expect = 9e-05
Identities = 31/275 (11%), Positives = 72/275 (26%), Gaps = 18/275 (6%)
Query: 303 LFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYS 362
L + P + +L +L + + A
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 363 KCGETKDGRLVF----DSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKR---- 414
+ + ++ + + +N+++ G+ G +E + +
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 415 NDVSWSAIISGYLEHKQFD-LVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDL 473
+ +S++A + Q + +M G + +L L+ +
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 474 HGKIIKLG-FPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD--------KNEISWTVMV 524
P V L D YAK G + + E++ V V
Sbjct: 259 KPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCV 318
Query: 525 RGLAESGYAKESINLFEEMEKTSITPNELTILSVL 559
+ + + + + KT E + L
Sbjct: 319 VSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRAL 353
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.4 bits (103), Expect = 1e-04
Identities = 11/145 (7%), Positives = 42/145 (28%), Gaps = 8/145 (5%)
Query: 115 ERNEVSWTALISGFMKHGRVEESMWYFER-------NPFQNVISWTAAICGFVQNGFSFE 167
+ A + ++ + + + A + G+ + G E
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 168 ALKLFLKLLESGVKPNEVTFSSICKACAEI-NDFRLGLSVFGLIFKAGFEKHVSVCNSLI 226
+ + + ++G+ P+ +++++ + D + + G + L+
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243
Query: 227 TLSLKMGEVDLARSVFDRMEKRDVV 251
+ + + V +
Sbjct: 244 SEEDRATVLKAVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 43.7 bits (101), Expect = 2e-04
Identities = 10/119 (8%), Positives = 34/119 (28%), Gaps = 9/119 (7%)
Query: 85 FDLVVHNCMINANIQWGNLEEAQRLFDGMPER----NEVSWTALISGFMKHGRVEESMWY 140
L ++N ++ + G +E + + + + +S+ A + + + ++
Sbjct: 163 LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIER 222
Query: 141 F-----ERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKAC 194
+ + + + K+ P V S + +
Sbjct: 223 CLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 6e-08
Identities = 37/234 (15%), Positives = 78/234 (33%), Gaps = 16/234 (6%)
Query: 103 LEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQN 162
+ EAQR+ PER+ L ++ + + + + + + +
Sbjct: 19 INEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASH 78
Query: 163 GFSFEALKLFLKLLESGVKPNEVTF-SSICKACAEINDFRLGLSVFGLIFKAGFEKHVSV 221
+ + + V TF + L +
Sbjct: 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH------QGDSLEC 132
Query: 222 CNSLITLSLKMGEVDLARSVFDRMEKRD---VVSWTVILDVFIEMGD--LGEARRIFDEM 276
+ + LK+ +DLAR +M+ +D ++ V + G L +A IF EM
Sbjct: 133 MAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEM 192
Query: 277 PERNEVSWSVMIAR---YNQSGYPEEAFRLFRQ-MTRYSFKPNTSCFSIVLSAL 326
++ + ++ + + G E A + ++ + + S P T +VLS
Sbjct: 193 ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH 246
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 6e-05
Identities = 31/221 (14%), Positives = 63/221 (28%), Gaps = 7/221 (3%)
Query: 103 LEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQN 162
+E + DGM + + SM E +
Sbjct: 236 VERGIEMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNY 295
Query: 163 GFSFEALKLFLKLLESGVKPNEVTFSSICKACAEI---NDFRLGLSVFGLIFKAGFEKHV 219
L+LF KL I A E ++F
Sbjct: 296 VLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDST 354
Query: 220 SVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPE- 278
+ L++G+ + AR++F R+EK + W +++ +G + R + D+ +
Sbjct: 355 LLKEEFFLFLLRIGDEENARALFKRLEKTSRM-WDSMIEYEFMVGSMELFRELVDQKMDA 413
Query: 279 -RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSC 318
+ + + R + R + ++F
Sbjct: 414 IKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFLDLKIR 454
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 712 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.7 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.7 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.6 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.59 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.58 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.57 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.54 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.53 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.52 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.52 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.5 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.49 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.49 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.48 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.47 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.46 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.46 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.45 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.42 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.38 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.36 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.35 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.34 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.33 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.33 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.32 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.29 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.28 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.27 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.27 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.27 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.21 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.19 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.19 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.19 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.17 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.16 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.16 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.14 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.14 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.13 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.13 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.12 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.11 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.1 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.1 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.06 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.06 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.05 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.04 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.04 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.02 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.01 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.97 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.97 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.95 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.93 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.92 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.92 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.91 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.89 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.88 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.86 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.86 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.85 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.84 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.83 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.82 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.8 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.78 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.78 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.78 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.75 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.74 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.74 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.73 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.71 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.7 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.69 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.68 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.67 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.66 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.66 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.65 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.65 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.63 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.62 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.62 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.61 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.61 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.59 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.58 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.58 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.57 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.57 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.56 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.54 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.52 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.51 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.51 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.51 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.5 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.48 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.48 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.47 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.47 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.46 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.46 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.44 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.42 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.42 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.39 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.36 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.36 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.35 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.34 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.33 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.33 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.32 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.31 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.31 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.3 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.28 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.27 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.27 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.26 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.25 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.25 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.23 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.22 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.22 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.21 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.2 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.19 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.18 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.17 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.12 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.12 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.11 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.11 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.08 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.07 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.06 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.04 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.03 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.01 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.0 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.99 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.99 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.97 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.91 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.87 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.85 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.8 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.73 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.71 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.71 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.71 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.56 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.53 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.52 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.43 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.36 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.3 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.24 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.18 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.16 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.11 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.1 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.1 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.01 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.88 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.78 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.75 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.62 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.48 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.46 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.43 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.4 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.39 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.32 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.19 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.62 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.61 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.54 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.38 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.06 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.97 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.33 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.25 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.03 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 93.65 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.61 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.17 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.14 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.96 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.35 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.22 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.9 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.76 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 91.73 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.29 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.73 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.77 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.6 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.52 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.2 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.15 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.8 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.07 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.0 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.88 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 85.85 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.04 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 84.26 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 81.02 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 80.63 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 80.53 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 80.13 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=352.23 Aligned_cols=517 Identities=8% Similarity=-0.037 Sum_probs=352.9
Q ss_pred HHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHH
Q 005136 128 FMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVF 207 (712)
Q Consensus 128 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 207 (712)
+.+.|.+..+...+...+.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 34556666777777777777888899999999999999999999999885 4577788888899999999999999988
Q ss_pred HHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHH
Q 005136 208 GLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVM 287 (712)
Q Consensus 208 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 287 (712)
+.+... +++..+++.++.+|.+.|++++|.++|+++...+... ..+...++ +..-...+..+|+.+
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~-------~~~~~~~~~~~~~~l 206 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLM-------QDGGIKLEASMCYLR 206 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------C-------CCSSCCHHHHHHHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----cccccccc-------cccccchhHHHHHHH
Confidence 877543 5677888888888888888888888888543322100 00000000 000112346678888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHH--HH-HHHHHHcCCCCcHHHHHHHHHHHHhc
Q 005136 288 IARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGM--HV-HAHVLKIGIEKDVFISNALIDLYSKC 364 (712)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 364 (712)
+..|.+.|++++|+++|++|.+.+ +.+...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.
T Consensus 207 ~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (597)
T 2xpi_A 207 GQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCc
Confidence 888888888888888888887743 223444444544443333222211 11 44444444445556677778888888
Q ss_pred CChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHH
Q 005136 365 GETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK---RNDVSWSAIISGYLEHKQFDLVFAVFNE 441 (712)
Q Consensus 365 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 441 (712)
|++++|..+|+++.+. +++..+|+.++..|.+.|++++|+++|+++.+ .+..+++.++.++.+.|++++|..++++
T Consensus 286 g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 286 DELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999888776 46788888899999999999999888887752 3566788888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcc
Q 005136 442 MLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEI 518 (712)
Q Consensus 442 ~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~ 518 (712)
+.... +.+..++..++..|.+.|++++|.++++++.+.. +.+..++..++.+|.+.|++++|.++|+++. ..+..
T Consensus 365 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 442 (597)
T 2xpi_A 365 LVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL 442 (597)
T ss_dssp HHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSH
T ss_pred HHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 87543 4567777788888888888888888888877643 3456677777777777777777777777654 33566
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhc---CCCCc--hHHHHH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIY---NIKPN--GRHYTC 593 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~ 593 (712)
+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..++..
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 77777777777777777777777777642 3355677777777777777777777777775321 44565 567777
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 594 VVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
++.+|.+.|++++|.+.++++ ...| +..++..+..+|...|++++|.+.++++++++|+++.++..|+.+|.
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 777777777777777777776 2233 56677777777777777777777777777777777777777776654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-38 Score=338.39 Aligned_cols=498 Identities=10% Similarity=0.042 Sum_probs=403.2
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHH
Q 005136 160 VQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLAR 239 (712)
Q Consensus 160 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 239 (712)
...|....+...+..+. .++...|+.++..+.+.|++++|..+++.+.... |+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHH
Confidence 34455555555554432 3578889999999999999999999999998654 56688889999999999999999
Q ss_pred HHHhhcC--CCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 005136 240 SVFDRME--KRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTS 317 (712)
Q Consensus 240 ~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 317 (712)
.+|+++. .++..+++.++.+|.+.|++++|..+|+++...+... ..+...++ ...+.+++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~-----------~~~~~~~~~~ 201 (597)
T 2xpi_A 138 CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLM-----------QDGGIKLEAS 201 (597)
T ss_dssp HHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------C-----------CCSSCCHHHH
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----cccccccc-----------cccccchhHH
Confidence 9999984 4788899999999999999999999998654332111 11111111 1235677889
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHH--H-HHhhhcCCC-CceeeHHHHHH
Q 005136 318 CFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRL--V-FDSIVEKDV-AHVVSWNSMIG 393 (712)
Q Consensus 318 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~-~~~~~~~~~-~~~~~~~~l~~ 393 (712)
+++.++.++.+.|++++|.+.|+.+.+.+. .+...+..+...+...+..+.+.. + +..+...++ .....|+.++.
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLN 280 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHH
Confidence 999999999999999999999999998752 345666666655544433332221 1 444444443 24556777788
Q ss_pred HHhccCChhhHHHHhhcCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHH
Q 005136 394 GYGLNGQMEEAKELFDNMPK--RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGK 471 (712)
Q Consensus 394 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 471 (712)
.|.+.|++++|.++|+++.+ ++..+++.++..|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|.
T Consensus 281 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
T 2xpi_A 281 KTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLY 359 (597)
T ss_dssp TTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHH
T ss_pred HHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999987 788999999999999999999999999999865 447778999999999999999999
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 005136 472 DLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSI 548 (712)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 548 (712)
.++..+.+.. +.+..++..++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+
T Consensus 360 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 437 (597)
T 2xpi_A 360 LISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF- 437 (597)
T ss_dssp HHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 9999998654 6678899999999999999999999999875 3467799999999999999999999999999852
Q ss_pred CCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC-
Q 005136 549 TPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-------PFEPD- 619 (712)
Q Consensus 549 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~- 619 (712)
+++..++..++.+|.+.|++++|.++|+++.+. .| +..++..++.+|.+.|++++|.++|+++ +..|+
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL---FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 346788999999999999999999999999843 44 7889999999999999999999999987 34677
Q ss_pred -HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 620 -SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 620 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
..+|..++.+|...|++++|+..++++++..|+++.++..++.+|.+.|++++|.++++++++..+.
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999986543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-26 Score=232.15 Aligned_cols=373 Identities=14% Similarity=0.108 Sum_probs=282.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 005136 288 IARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGET 367 (712)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 367 (712)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...+....+.. +.+...+..+...|...|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 445566777777777777766521 2234455555566667777777777777776653 34566777777778888888
Q ss_pred HHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005136 368 KDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK--R-NDVSWSAIISGYLEHKQFDLVFAVFNEMLL 444 (712)
Q Consensus 368 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 444 (712)
++|...|+++...+|.+..+|..+..++...|++++|++.++++.+ | +...+..+...+...|++++|...|+++..
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888877777666666777777777777888877777776652 3 344566677777777888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHH
Q 005136 445 SGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWT 521 (712)
Q Consensus 445 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 521 (712)
.. +.+..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...+++.. +.+..++.
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 53 3356777888888888888888888888888764 4456677788888888888888888887664 33566788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhh
Q 005136 522 VMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLS 599 (712)
Q Consensus 522 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 599 (712)
.+...+...|++++|++.++++.+ ..| +..++..+..++.+.|++++|+..|+++.+. .| +..++..++.++.
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL---CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHH
Confidence 888888889999999999988888 445 4567888888888889999999998888743 44 6788888888888
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 005136 600 RSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGR 669 (712)
Q Consensus 600 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 669 (712)
+.|++++|...++++ ...|+ ...+..+...+...|++++|...++++++..|+++.++..++.++...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 899999999888887 44454 67778888888889999999999999999899988888888888877763
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-26 Score=229.96 Aligned_cols=355 Identities=13% Similarity=0.118 Sum_probs=312.1
Q ss_pred HHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChh
Q 005136 323 LSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQME 402 (712)
Q Consensus 323 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 402 (712)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++.....++.+..+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345667899999999999988864 3356677788889999999999999999999988888999999999999999999
Q ss_pred hHHHHhhcCC--CC-CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 005136 403 EAKELFDNMP--KR-NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIK 479 (712)
Q Consensus 403 ~a~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 479 (712)
+|++.|+++. .| +..+|..++.++...|++++|...|+++.+.. +.+...+..+...+...|++++|...+.++.+
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999886 34 45579999999999999999999999998864 33445667777888999999999999999988
Q ss_pred cCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHH
Q 005136 480 LGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTI 555 (712)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~ 555 (712)
.. +.+...+..+..++...|++++|...|+++. +.+...|..+...+...|++++|+..+++... +.|+ ..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHHH
Confidence 64 4567888999999999999999999999886 33456788899999999999999999999988 4564 6788
Q ss_pred HHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHhh
Q 005136 556 LSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-P-FEPDSNAWASLLSGCKT 632 (712)
Q Consensus 556 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 632 (712)
..+..++...|++++|++.|+++.+ ..| +..++..++.++.+.|++++|...++++ . .+++...+..+...+..
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 8999999999999999999999983 366 6788999999999999999999999998 3 34568889999999999
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 633 YKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 633 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
.|++++|...++++++..|+++.++..++.+|.+.|++++|++.++++++..+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999988543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=230.71 Aligned_cols=186 Identities=12% Similarity=0.142 Sum_probs=165.4
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC---------hhhHHHHHHHHHHcCCCCcHHH
Q 005136 283 SWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKA---------LRSGMHVHAHVLKIGIEKDVFI 353 (712)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 353 (712)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|++|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 5788899999999999999999999999999999999999999987654 6789999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhcCCC-CceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCCh
Q 005136 354 SNALIDLYSKCGETKDGRLVFDSIVEKDV-AHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQF 432 (712)
Q Consensus 354 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 432 (712)
|+++|.+|++.|++++|.++|++|.+.+. |+..+|+.+|.+|++.|++++|
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A---------------------------- 159 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA---------------------------- 159 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH----------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH----------------------------
Confidence 99999999999999999999999998875 6777777777777777777666
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 005136 433 DLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKS 499 (712)
Q Consensus 433 ~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 499 (712)
.++|++|.+.|+.||..||+.+|.+|++.|+.++|.+++++|.+.+..|+..+++.++..|...
T Consensus 160 ---~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 160 ---YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp ---HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred ---HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888889989999999999999999999999999999999999988999999998888888653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=231.29 Aligned_cols=215 Identities=13% Similarity=0.101 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHcCCCCCHh-hHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhc
Q 005136 167 EALKLFLKLLESGVKPNEV-TFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRM 245 (712)
Q Consensus 167 ~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 245 (712)
.+..+.+++.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+....+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 4556667777777765543 57888999999999999999999999999999999999999988876643211
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005136 246 EKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSA 325 (712)
Q Consensus 246 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 325 (712)
.+.+..++|.++|++|...|+.||..||+.+|.+
T Consensus 81 ----------------------------------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~ 114 (501)
T 4g26_A 81 ----------------------------------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARL 114 (501)
T ss_dssp ----------------------------------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred ----------------------------------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 1234568899999999999999999999999999
Q ss_pred HhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC-CceeeHHHHHHHHhccCChhhH
Q 005136 326 LASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDV-AHVVSWNSMIGGYGLNGQMEEA 404 (712)
Q Consensus 326 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a 404 (712)
|++.|++++|.+++++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.+. |+..+|+.|+.+|++.|+.++|
T Consensus 115 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A 194 (501)
T 4g26_A 115 AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKV 194 (501)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999998886 6777777777777777777777
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 005136 405 KELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVA 465 (712)
Q Consensus 405 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~ 465 (712)
.++|++|.+.|..|+..||+.++..++..+
T Consensus 195 -------------------------------~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 195 -------------------------------YKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp -------------------------------HHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred -------------------------------HHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999887643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-23 Score=221.57 Aligned_cols=393 Identities=10% Similarity=-0.008 Sum_probs=293.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 005136 284 WSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSK 363 (712)
Q Consensus 284 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 363 (712)
+......+.+.|++++|+..|+++.... |+...+..+..++...|++++|...++.+.+.. +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 4445556666677777777777666633 566666666666667777777777777666654 2345566666677777
Q ss_pred cCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHH-------------------------------------
Q 005136 364 CGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKE------------------------------------- 406 (712)
Q Consensus 364 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~------------------------------------- 406 (712)
.|++++|...|+++...++++......++..+........+.+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 7777777777777666655433333333333222111111111
Q ss_pred -HhhcCC---------CC-CcccHHHHHHHHHh---cCChhHHHHHHHHHHH-----CCC--------CCCHHHHHHHHH
Q 005136 407 -LFDNMP---------KR-NDVSWSAIISGYLE---HKQFDLVFAVFNEMLL-----SGE--------IPNKSTFSSVLC 459 (712)
Q Consensus 407 -~~~~~~---------~~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~g~--------~p~~~~~~~ll~ 459 (712)
.+.... .| +...+......+.. .|++++|...|+++.. ... +.+...+..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 111111 01 13345555555554 8999999999999988 311 223456777888
Q ss_pred HHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHH
Q 005136 460 ASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKES 536 (712)
Q Consensus 460 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 536 (712)
.+...|++++|...+..+.+.... ...+..+..++...|++++|...++.+.+ .+...+..+...+...|++++|
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 899999999999999999987533 88888999999999999999999988753 4566888999999999999999
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 537 INLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 537 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
+..++++.+. .| +...+..+...+...|++++|...++++... .| +...+..++.++.+.|++++|...++++
T Consensus 324 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 324 GKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999984 44 4578888999999999999999999998843 45 6788999999999999999999999987
Q ss_pred ----CCCCC----HHHHHHHHHHHhh---cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 615 ----PFEPD----SNAWASLLSGCKT---YKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 615 ----~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
+..++ ...+..+...+.. .|++++|...++++++..|+++.++..++.++.+.|++++|.+.++++++.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22222 3478888888999 999999999999999999999999999999999999999999999999886
Q ss_pred CCc
Q 005136 684 GLR 686 (712)
Q Consensus 684 ~~~ 686 (712)
++.
T Consensus 479 ~~~ 481 (514)
T 2gw1_A 479 ART 481 (514)
T ss_dssp CSS
T ss_pred ccc
Confidence 543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-23 Score=218.27 Aligned_cols=454 Identities=10% Similarity=0.014 Sum_probs=291.4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHH
Q 005136 151 SWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSL 230 (712)
Q Consensus 151 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 230 (712)
.|......+.+.|++++|+..|+++.+.+ |+..++..+..++...|++++|...++.+++.+ +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45566677777788888888888877754 677777778888888888888888888777765 445567777777777
Q ss_pred ccCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHhhCCC----CCceeHHHHHHHHHhcCChhHHHHH
Q 005136 231 KMGEVDLARSVFDRMEKR---DVVSWTVILDVFIEMGDLGEARRIFDEMPE----RNEVSWSVMIARYNQSGYPEEAFRL 303 (712)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~ 303 (712)
..|++++|...|+++.+. +......++..+........+.+.+..+.. ++...+..- .
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~--------- 149 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPA------K--------- 149 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChh------h---------
Confidence 778888887777766531 222222222222222222222111111111 000000000 0
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHh---cCChHHHHHHHHhhhc-
Q 005136 304 FRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSK---CGETKDGRLVFDSIVE- 379 (712)
Q Consensus 304 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~- 379 (712)
.........|+.......+..+........ ...+.+...+......+.. .|++++|...|+++..
T Consensus 150 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 218 (514)
T 2gw1_A 150 -ERKDKQENLPSVTSMASFFGIFKPELTFAN----------YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARL 218 (514)
T ss_dssp --------CCCCHHHHHHHHTTSCCCCCCSS----------CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred -HHHhhccCCchhHHHHHHHhhcCHHHHHHH----------hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Confidence 000011122333222222221111111000 0001224444444444444 7788888888877765
Q ss_pred ----C--CCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 005136 380 ----K--DVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKST 453 (712)
Q Consensus 380 ----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~ 453 (712)
. .+.+.... ..+..++..++..+...|++++|...|+++.... |+...
T Consensus 219 ~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~ 272 (514)
T 2gw1_A 219 FEEQLDKNNEDEKLK------------------------EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNS 272 (514)
T ss_dssp HHHHTTTSTTCHHHH------------------------HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHH
T ss_pred hhhhhccCccccccC------------------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHH
Confidence 3 11110000 0112345555666666666666688888877754 33677
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHc
Q 005136 454 FSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAES 530 (712)
Q Consensus 454 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 530 (712)
+..+...+...|++++|...+..+.+.. +.+...+..+..++...|++++|...++.+. ..+...+..+...+...
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc
Confidence 7777888888888888888888887653 4456677888888888999999988888764 34566788888899999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc----hHHHHHHHHHhhh---cCC
Q 005136 531 GYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN----GRHYTCVVDMLSR---SGR 603 (712)
Q Consensus 531 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~ 603 (712)
|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.....-.++ ...+..++.++.. .|+
T Consensus 352 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 430 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430 (514)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH
T ss_pred CCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC
Confidence 99999999999998842 334577888889999999999999999988743222222 3488899999999 999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 005136 604 LSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLS 661 (712)
Q Consensus 604 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 661 (712)
+++|...++++ ...| +...+..+...+...|++++|...+++++++.|+++.++..+.
T Consensus 431 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 99999999987 3334 4777888888899999999999999999999999888877664
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-22 Score=206.33 Aligned_cols=331 Identities=11% Similarity=0.081 Sum_probs=231.4
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHH
Q 005136 315 NTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGG 394 (712)
Q Consensus 315 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 394 (712)
+...+..+...+.+.|++++|...++.+.+.. +.+...+..+..+|...|++++|...|+++.+.++.+..++..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---- 99 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ---- 99 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH----
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH----
Confidence 33444555555555555555555555555432 2234455555555555555555555555555544444444444
Q ss_pred HhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHH------------H
Q 005136 395 YGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNK----STFSSV------------L 458 (712)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~----~~~~~l------------l 458 (712)
++.+|...|++++|...|+++.... |+. ..+..+ .
T Consensus 100 ---------------------------l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 100 ---------------------------RGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp ---------------------------HHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555566666665532 322 233222 3
Q ss_pred HHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHH
Q 005136 459 CASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKE 535 (712)
Q Consensus 459 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 535 (712)
..+...|++++|...+..+.+.. +.+...+..+..+|.+.|++++|...|+.+. ..+..+|..++..+...|++++
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34677788888888888887653 4566778888888888888888888888775 3467788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHH------------HHHhcccCcHHHHHHHHHhcchhcCCCCc-----hHHHHHHHHH
Q 005136 536 SINLFEEMEKTSITPNEL-TILSV------------LFACSHSGLVDKGLKYFNSMEPIYNIKPN-----GRHYTCVVDM 597 (712)
Q Consensus 536 A~~~~~~~~~~~~~p~~~-~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~ 597 (712)
|+..++++.+ ..|+.. .+..+ ...|...|++++|+..|+++.+. .|+ ...+..++.+
T Consensus 230 A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 230 SLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHH
Confidence 9999999987 456543 33333 77888999999999999999843 453 4478889999
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH------------
Q 005136 598 LSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNI------------ 663 (712)
Q Consensus 598 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------ 663 (712)
+.+.|++++|...++++ ...| +...+..+..+|...|++++|...+++++++.|+++.++..++.+
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 384 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDY 384 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhH
Confidence 99999999999999987 4444 588899999999999999999999999999999999999999944
Q ss_pred HHhcC-----CchhHHHHHHH-HHhCCC
Q 005136 664 YASAG-----RWIDAMNVRKL-MTEKGL 685 (712)
Q Consensus 664 ~~~~g-----~~~eA~~~~~~-~~~~~~ 685 (712)
|...| ..+++.+.+++ .++..+
T Consensus 385 y~~lg~~~~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 385 YKILGVKRNAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp GGGSCSSTTCCTTHHHHHHHHHHHHSCG
T ss_pred HHHhCCCccCCHHHHHHHHHHHHHHhCC
Confidence 55556 56677888886 444443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.5e-22 Score=210.05 Aligned_cols=391 Identities=12% Similarity=0.046 Sum_probs=253.0
Q ss_pred CceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHH
Q 005136 280 NEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALID 359 (712)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 359 (712)
++.+|..+...+.+.|++++|++.|+++.+.+ +.+...+..+..++...|++++|...++.+ .. .|+. ....+.
T Consensus 58 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~ 131 (537)
T 3fp2_A 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVL-SL--NGDF--DGASIE 131 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C---------------
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHH
Confidence 44556666666666666666666666665532 234555666666666666666666666422 11 1111 111233
Q ss_pred HHHhcCChHHHHHHHHhhhcCCC---CceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcc---cHHHHHHHHHh-----
Q 005136 360 LYSKCGETKDGRLVFDSIVEKDV---AHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDV---SWSAIISGYLE----- 428 (712)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~----- 428 (712)
.+...+....|...++.+....+ +........+..+....+.+.+...+......+.. ....+...+..
T Consensus 132 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 211 (537)
T 3fp2_A 132 PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY 211 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhh
Confidence 34444555667777777665432 22223344455555666666666666665554433 33333333322
Q ss_pred ---cCChhHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 005136 429 ---HKQFDLVFAVFNEMLLSGEIPN--------KSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYA 497 (712)
Q Consensus 429 ---~~~~~~a~~~~~~~~~~g~~p~--------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 497 (712)
.|++++|..+|+++.+.. |+ ..++..+...+...|++++|...+..+.+.. |+...+..+...+.
T Consensus 212 ~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 287 (537)
T 3fp2_A 212 LVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLA 287 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHH
Confidence 246777888888877653 33 2245555566777788888888888887753 33667777778888
Q ss_pred hcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHH
Q 005136 498 KSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLK 573 (712)
Q Consensus 498 ~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 573 (712)
..|++++|...++.+. ..+..+|..+...+...|++++|+..++++.+. .| +...+..+...+...|++++|..
T Consensus 288 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~ 365 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEA 365 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887765 345667788888888888888888888888874 34 34677778888888888888888
Q ss_pred HHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-C---CCC----CHHHHHHHHHHHhhc----------C
Q 005136 574 YFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-P---FEP----DSNAWASLLSGCKTY----------K 634 (712)
Q Consensus 574 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p----~~~~~~~l~~~~~~~----------g 634 (712)
.++++.+. .| +...+..++.++...|++++|...++++ . ..+ ....+......+... |
T Consensus 366 ~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 366 FFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 88888743 45 5667888888888888888888888875 1 111 122233444556666 8
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 635 NEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 635 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
++++|...++++++..|+++.++..++.+|.+.|++++|++.++++++..+
T Consensus 443 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 888888888888888888888888888888888888888888888877543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-18 Score=189.34 Aligned_cols=353 Identities=10% Similarity=0.087 Sum_probs=276.6
Q ss_pred CceeHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHH
Q 005136 280 NEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSF--KPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNAL 357 (712)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 357 (712)
++.--...+.+|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +.....++....... + ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence 333445677888899999999999999874321 12334445566666555 555555555554321 1 3447
Q ss_pred HHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 005136 358 IDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFA 437 (712)
Q Consensus 358 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 437 (712)
...+...|.+++|..+|++.... ..+.+.++ ...+++++|.++.+++ .++.+|..+..++...|++++|+.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~----~~A~~VLi---e~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVN----TSAVQVLI---EHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCH----HHHHHHHH---HHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 77889999999999999997411 22223332 2678999999999977 447789999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCc
Q 005136 438 VFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNE 517 (712)
Q Consensus 438 ~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 517 (712)
.|.+. -|...|..++.+|.+.|++++|.+++...++.. +++.+...++.+|++.+++++...+. ..++.
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ 1195 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNN 1195 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCH
Confidence 99663 577888899999999999999999999988764 34444446999999999999755554 35566
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHH
Q 005136 518 ISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDM 597 (712)
Q Consensus 518 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 597 (712)
..|..+...|...|++++|...|... ..|..+...+.+.|+++.|++.+++.. +..+|..+..+
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~a 1259 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHH
Confidence 77788999999999999999999985 379999999999999999999999875 66899999999
Q ss_pred hhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc--CCchhHHH
Q 005136 598 LSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASA--GRWIDAMN 675 (712)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~eA~~ 675 (712)
+...|++..|......+ ..++..+..++..|...|.+++|+.+++.++.++|.+...+..|+.+|.+- ++..|+++
T Consensus 1260 cve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred HhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999988764 345566678888899999999999999999999999999998888887754 45555555
Q ss_pred HHH
Q 005136 676 VRK 678 (712)
Q Consensus 676 ~~~ 678 (712)
+|.
T Consensus 1338 ~f~ 1340 (1630)
T 1xi4_A 1338 LFW 1340 (1630)
T ss_pred HHH
Confidence 554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-21 Score=200.66 Aligned_cols=366 Identities=9% Similarity=0.027 Sum_probs=258.1
Q ss_pred CceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHH
Q 005136 280 NEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALID 359 (712)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 359 (712)
++..+..+...+.+.|++++|+.+|+++.+. .+.+...+..+..++...|++++|...++.+.+.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 4456778888889999999999999988763 24467888888889999999999999999998875 335778889999
Q ss_pred HHHhcCChHHHHHHHHhhhcCCCCce---eeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHH
Q 005136 360 LYSKCGETKDGRLVFDSIVEKDVAHV---VSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVF 436 (712)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 436 (712)
+|...|++++|...|+++.+.++.+. ..+..++..+...+ +..+...+...|++++|.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-------------------LRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHcCCHHHHH
Confidence 99999999999999999998887666 67766655532221 122334455566666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC--
Q 005136 437 AVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD-- 514 (712)
Q Consensus 437 ~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 514 (712)
..|+++.... +.+...+..+...+...|++++|...+.++.+.. +.+..++..+..+|...|++++|...|+++.+
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666666542 3355566666666666666666666666666542 34456666666667777777777766666542
Q ss_pred C-CcchHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhcccCcHHHHHHHHH
Q 005136 515 K-NEISWTVM------------VRGLAESGYAKESINLFEEMEKTSITPN-----ELTILSVLFACSHSGLVDKGLKYFN 576 (712)
Q Consensus 515 ~-~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~ 576 (712)
| +...+..+ +..+...|++++|+..++++.+ +.|+ ...+..+..++.+.|++++|+..++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2 22233333 7788888999999999999888 4555 3467778888889999999999999
Q ss_pred hcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HhhcC-----CH
Q 005136 577 SMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSG------------CKTYK-----NE 636 (712)
Q Consensus 577 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~g-----~~ 636 (712)
++... .| +...+..++.+|...|++++|...++++ ...|+ ...+..+..+ |...| +.
T Consensus 320 ~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 320 EVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 88733 45 6788889999999999999999999887 55665 4444444422 33334 66
Q ss_pred HHHHHHHHH-HhccCCCCCc----------hHHHHHHHHHhcCCchhH
Q 005136 637 QIAERAVKN-LWKLAEEHPA----------GYVLLSNIYASAGRWIDA 673 (712)
Q Consensus 637 ~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~eA 673 (712)
+++.+.+++ +++..|++.. .+..++.+|...|+.+++
T Consensus 397 ~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 397 QEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp THHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 778888886 7778887432 344555555555555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-20 Score=195.93 Aligned_cols=202 Identities=13% Similarity=0.058 Sum_probs=103.1
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcC
Q 005136 455 SSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESG 531 (712)
Q Consensus 455 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 531 (712)
..+...+...|++++|...+.++.+.. +.+..++..+..++...|++++|...++++. ..+...|..+...+...|
T Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 358 (537)
T 3fp2_A 280 IFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQG 358 (537)
T ss_dssp HHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 333333333344444444333333322 2233334444444444444444444444433 123344555555555666
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhc----CCCCchHHHHHHHHHhhhc------
Q 005136 532 YAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIY----NIKPNGRHYTCVVDMLSRS------ 601 (712)
Q Consensus 532 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~------ 601 (712)
++++|+..++++.+.. +.+...+..+...+...|++++|...|+++.+.. ........+..++.++.+.
T Consensus 359 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 437 (537)
T 3fp2_A 359 KFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437 (537)
T ss_dssp CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccch
Confidence 6666666666655531 2223455555556666666666666665544221 1111333345555566666
Q ss_pred ----CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHH
Q 005136 602 ----GRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYV 658 (712)
Q Consensus 602 ----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 658 (712)
|++++|...+++. ...| +...+..+...+...|++++|...+++++++.|+++....
T Consensus 438 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 7777777777665 2233 3556666666677777777777777777777777655443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9e-17 Score=174.79 Aligned_cols=379 Identities=16% Similarity=0.170 Sum_probs=294.1
Q ss_pred hHHHHHHHhhccchhhhhhhHHHHHHHhCC--CCcchhhhHHHHHHhcCCChhHhHHHHhhcCCCCcchHHHHHHHHHhc
Q 005136 23 TCLCLLKDITSQNLVIQGRALHGHLIKTGI--HKERYLTTRLLIMYLGSRKSLEANEIVKDLNGFDLVVHNCMINANIQW 100 (712)
Q Consensus 23 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (712)
--...+++|...|.+.+|.+++++++..+- ..+...-+.|+....+. +.....+..++... .....+...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~---~d~~eIA~Iai~l 1062 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN---YDAPDIANIAISN 1062 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh---ccHHHHHHHHHhC
Confidence 345577888899999999999999984421 23455666677766666 44555555554442 2256688888999
Q ss_pred CChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 005136 101 GNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGV 180 (712)
Q Consensus 101 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 180 (712)
|.+++|..+|++... .....+.++ ...|++++|.++.++.. +..+|..+..++...|++++|++.|.+.
T Consensus 1063 glyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA----- 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA----- 1131 (1630)
T ss_pred CCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----
Confidence 999999999999752 222223332 37789999999999875 4678889999999999999999999764
Q ss_pred CCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHH
Q 005136 181 KPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVF 260 (712)
Q Consensus 181 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~ 260 (712)
-|...|..++.++.+.|++++|.+.+...++.. +++...+.++.+|++.+++++...+. ..++...|..+...+
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRC 1205 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHH
Confidence 377888999999999999999999999888765 33333445888999999988655443 356667788899999
Q ss_pred HhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 005136 261 IEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHA 340 (712)
Q Consensus 261 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 340 (712)
...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+..+|...|++..|.....
T Consensus 1206 e~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 1274 (1630)
T ss_pred HhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999999999986 47999999999999999999999876 456888888899999999988888655
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhc--cCChhhHHHHhhcCCC-----
Q 005136 341 HVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGL--NGQMEEAKELFDNMPK----- 413 (712)
Q Consensus 341 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~----- 413 (712)
. +..++..+..++..|.+.|.+++|..+++.....++.....|+-+...+++ .++..++.+.|..-..
T Consensus 1275 ~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~ 1349 (1630)
T 1xi4_A 1275 H-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL 1349 (1630)
T ss_pred h-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh
Confidence 3 334667777899999999999999999999988886677778777766665 4556666666665443
Q ss_pred ---CCcccHHHHHHHHHhcCChhHHHHH
Q 005136 414 ---RNDVSWSAIISGYLEHKQFDLVFAV 438 (712)
Q Consensus 414 ---~~~~~~~~l~~~~~~~~~~~~a~~~ 438 (712)
.+...|..+.-.|.+.|+++.|...
T Consensus 1350 r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1350 RAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 2566788899999999999888753
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-19 Score=178.38 Aligned_cols=303 Identities=14% Similarity=0.085 Sum_probs=143.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC--C-CcccHHHHHHHHHhcC
Q 005136 354 SNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK--R-NDVSWSAIISGYLEHK 430 (712)
Q Consensus 354 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~ 430 (712)
+..+...+...|++++|...|+++.+.++.+..++..+...+...|++++|+..++++.+ | +...+..+...+...|
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence 334444444444444444444444444444444444444444444444444444444331 1 2334455555555555
Q ss_pred ChhHHHHHHHHHHHCCCCC----CHHHHHHH------------HHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 005136 431 QFDLVFAVFNEMLLSGEIP----NKSTFSSV------------LCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTD 494 (712)
Q Consensus 431 ~~~~a~~~~~~~~~~g~~p----~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 494 (712)
++++|...|++..... | +...+..+ ...+...|++++|...+..+.+.. +.+...+..+..
T Consensus 86 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 162 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAE 162 (359)
T ss_dssp CHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 5555577777666542 3 22222222 344555556666666655555442 334445555555
Q ss_pred HHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-HH------------HH
Q 005136 495 TYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELT-IL------------SV 558 (712)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~-~~------------~l 558 (712)
++...|++++|...++.+.+ .+...+..+...+...|++++|...++++.+. .|+... +. .+
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555432 23345555555556666666666666655552 333211 11 11
Q ss_pred HHHhcccCcHHHHHHHHHhcchhcCCCCc-h----HHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHh
Q 005136 559 LFACSHSGLVDKGLKYFNSMEPIYNIKPN-G----RHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCK 631 (712)
Q Consensus 559 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 631 (712)
...+...|++++|...++++... .|+ . ..+..++.++...|++++|...+++. ...| +...+..+...+.
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 33344455555555555554422 221 1 12233444455555555555555444 1122 3444444444455
Q ss_pred hcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 632 TYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 632 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
..|++++|...++++++++|+++.+...|..+.
T Consensus 318 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 555555555555555555555544444444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-18 Score=173.84 Aligned_cols=296 Identities=11% Similarity=0.082 Sum_probs=247.4
Q ss_pred eeeHHHHHHHHhccCChhhHHHHhhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005136 385 VVSWNSMIGGYGLNGQMEEAKELFDNMPK---RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCAS 461 (712)
Q Consensus 385 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~ 461 (712)
...+..+...+...|++++|+..++++.+ .+..++..+...+...|++++|...|+++.+.. +.+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 45677888899999999999999998863 356789999999999999999999999998863 34668888899999
Q ss_pred hccCchHHHHHHHHHHHHcCCC--CchhhHHHH------------HHHHHhcCChHHHHHHhccCC---CCCcchHHHHH
Q 005136 462 ASVASLEKGKDLHGKIIKLGFP--YDVFLGTAL------------TDTYAKSGDIESSRRVFDRMP---DKNEISWTVMV 524 (712)
Q Consensus 462 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~ 524 (712)
...|++++|...+.++.+.... .+...+..+ ...+...|++++|...++.+. +.+...+..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999876420 244444444 578899999999999999876 34667888999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHH-----------
Q 005136 525 RGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYT----------- 592 (712)
Q Consensus 525 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~----------- 592 (712)
..+...|++++|+..++++.+.. +.+...+..+...+...|++++|...|+++.+. .| +...+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999842 335678889999999999999999999999843 44 333332
Q ss_pred -HHHHHhhhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 593 -CVVDMLSRSGRLSEAEDFINSM-PFEPD-S----NAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 593 -~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
.++..+.+.|++++|...++++ ...|+ . ..+..+...+...|++++|...++++++..|+++.++..++.++.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3377799999999999999987 33444 2 234456777999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhCCC
Q 005136 666 SAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 666 ~~g~~~eA~~~~~~~~~~~~ 685 (712)
..|++++|++.++++++..+
T Consensus 318 ~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HcCCHHHHHHHHHHHHhcCC
Confidence 99999999999999998654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.1e-18 Score=168.87 Aligned_cols=288 Identities=12% Similarity=0.058 Sum_probs=195.2
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHH
Q 005136 348 EKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYL 427 (712)
Q Consensus 348 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 427 (712)
+.+..++..++..+...|++++|..+|+++.+.++.+...+..++..+...|++++|...+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~------------------- 79 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLS------------------- 79 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHH-------------------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHH-------------------
Confidence 3455566667777777788888888888877777666666666666666677777774444
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHH
Q 005136 428 EHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVA-SLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSR 506 (712)
Q Consensus 428 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 506 (712)
+++.... +.+...+..+...+...| ++++|...+.++.+.. +.+...+..+..++...|++++|.
T Consensus 80 ------------~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 145 (330)
T 3hym_B 80 ------------HKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAM 145 (330)
T ss_dssp ------------HHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHH
T ss_pred ------------HHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHH
Confidence 4444321 223334444444444444 4555555554444432 223444555566666666666666
Q ss_pred HHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhc
Q 005136 507 RVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIY 582 (712)
Q Consensus 507 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 582 (712)
..++++. +.+...+..+...+...|++++|++.++++.+. .| +...+..+...+...|++++|...++++.+..
T Consensus 146 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 146 AAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 6666554 223455666777777888888888888887773 34 45667777778888888888888887776321
Q ss_pred C-------CCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 005136 583 N-------IKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 583 ~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
. ...+...+..++.+|...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 1 1224678889999999999999999999887 3333 46778888888999999999999999999999999
Q ss_pred CchHHHHHHHHH-hcCCc
Q 005136 654 PAGYVLLSNIYA-SAGRW 670 (712)
Q Consensus 654 ~~~~~~l~~~~~-~~g~~ 670 (712)
+.++..++.++. ..|+.
T Consensus 304 ~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 304 TFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHTTTTC-
T ss_pred hHHHHHHHHHHHHHhCch
Confidence 999999999884 55554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=9e-18 Score=166.39 Aligned_cols=266 Identities=12% Similarity=0.095 Sum_probs=227.6
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHH
Q 005136 414 RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALT 493 (712)
Q Consensus 414 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 493 (712)
.+...+..++..+...|++++|..+|+++.... +.+...+..++..+...|++++|..++.++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456677778888888888888899999998764 3445566667788889999999999999999864 55678888999
Q ss_pred HHHHhcC-ChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHH
Q 005136 494 DTYAKSG-DIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVD 569 (712)
Q Consensus 494 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 569 (712)
..+...| ++++|...|++..+ .+...|..+...+...|++++|++.++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998763 356689999999999999999999999999852 234567777889999999999
Q ss_pred HHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CC----------CCCHHHHHHHHHHHhhcCCHH
Q 005136 570 KGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF----------EPDSNAWASLLSGCKTYKNEQ 637 (712)
Q Consensus 570 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~g~~~ 637 (712)
+|...++++. ...| +...+..++.++...|++++|...+++. .. ......+..+...+...|+++
T Consensus 177 ~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQAL---SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH---HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999998 3456 6788999999999999999999999876 11 233578888999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 638 IAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 638 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
+|...++++++..|+++.++..++.++.+.|++++|.++++++++..+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999998877543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.4e-18 Score=170.36 Aligned_cols=258 Identities=11% Similarity=0.023 Sum_probs=190.6
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 005136 417 VSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTY 496 (712)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 496 (712)
..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+.++.+.. +.+...+..+..+|
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555566666666666666666543 3345555556666666666666666666665543 33455566666666
Q ss_pred HhcCChHHHHHHhccCCC--C-CcchHHH---------------HHHHHHHcCChHHHHHHHHHHHHcCCCCC---HHHH
Q 005136 497 AKSGDIESSRRVFDRMPD--K-NEISWTV---------------MVRGLAESGYAKESINLFEEMEKTSITPN---ELTI 555 (712)
Q Consensus 497 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~ 555 (712)
...|++++|...++++.. | +...+.. .+..+...|++++|+..++++.+. .|+ ..++
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~ 220 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQ 220 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH--STTSCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh--CcCcccHHHH
Confidence 666666666666665442 1 1111110 133334889999999999999984 454 6788
Q ss_pred HHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhh
Q 005136 556 LSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKT 632 (712)
Q Consensus 556 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 632 (712)
..+...+...|++++|+..|+++... .| +...+..++.++...|++++|...++++ ...| +...+..+...+..
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 89999999999999999999998843 55 6789999999999999999999999987 3344 47788889999999
Q ss_pred cCCHHHHHHHHHHHhccCCCC-----------CchHHHHHHHHHhcCCchhHHHHHHHHH
Q 005136 633 YKNEQIAERAVKNLWKLAEEH-----------PAGYVLLSNIYASAGRWIDAMNVRKLMT 681 (712)
Q Consensus 633 ~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 681 (712)
.|++++|...++++++..|++ +.++..++.+|...|++++|..++++.+
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 999999999999999999887 7899999999999999999999887544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.4e-17 Score=157.52 Aligned_cols=280 Identities=15% Similarity=0.173 Sum_probs=125.5
Q ss_pred ccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHH
Q 005136 130 KHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGL 209 (712)
Q Consensus 130 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (712)
+.|++++|.+.+++++.|+ +|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4566667777776665443 6667777777777777777777542 4556677777777777777777776665
Q ss_pred HHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHH
Q 005136 210 IFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIA 289 (712)
Q Consensus 210 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 289 (712)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 5553 3345666677777777777777666664 356667777777777777777777777766 36888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHH
Q 005136 290 RYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKD 369 (712)
Q Consensus 290 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 369 (712)
.+.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|.+++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHH
Confidence 888888888888888877 3677888888888888888888554333 22333445568888999999999
Q ss_pred HHHHHHhhhcCCCCceeeHHHHHHHHhc--cCChhhHHHHhhcCCC--------CCcccHHHHHHHHHhcCChhHHHHH
Q 005136 370 GRLVFDSIVEKDVAHVVSWNSMIGGYGL--NGQMEEAKELFDNMPK--------RNDVSWSAIISGYLEHKQFDLVFAV 438 (712)
Q Consensus 370 A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~ 438 (712)
|..+++.....+......|+-+.-.|++ .++..+.++.|..-.. .+...|..+.-.|...++++.|..+
T Consensus 226 ai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 226 LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 9999998888776677777777777765 3455666666654442 2577899999999999999988764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-16 Score=162.85 Aligned_cols=353 Identities=10% Similarity=-0.003 Sum_probs=232.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cC
Q 005136 294 SGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALAS----LKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSK----CG 365 (712)
Q Consensus 294 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 365 (712)
.+++++|+..|++..+.| +...+..+...+.. .++.++|.+.++...+.| +...+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 444455555554444432 23333333344433 445555555555544433 33344444444444 44
Q ss_pred ChHHHHHHHHhhhcCCCCceeeHHHHHHHHhc----cCChhhHHHHhhcCCC-CCcccHHHHHHHHHh----cCChhHHH
Q 005136 366 ETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGL----NGQMEEAKELFDNMPK-RNDVSWSAIISGYLE----HKQFDLVF 436 (712)
Q Consensus 366 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~ 436 (712)
++++|...|++..+.+ +..++..+...|.. .++.++|++.|++..+ .++..+..+...|.. .+++++|.
T Consensus 130 ~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 5555555555544433 23334444444443 4555555555554432 244455566666665 66777778
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCChHHHHHH
Q 005136 437 AVFNEMLLSGEIPNKSTFSSVLCASAS----VASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAK----SGDIESSRRV 508 (712)
Q Consensus 437 ~~~~~~~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 508 (712)
..|++..+.| +...+..+...+.. .+++++|..++.+..+.+ +...+..+..+|.. .+++++|...
T Consensus 208 ~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 208 QWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 8888877765 34455555555554 678888888888877654 34556667777776 7888899888
Q ss_pred hccCCCC-CcchHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC---cHHHHHHHHHhcc
Q 005136 509 FDRMPDK-NEISWTVMVRGLAES-----GYAKESINLFEEMEKTSITPNELTILSVLFACSHSG---LVDKGLKYFNSME 579 (712)
Q Consensus 509 ~~~~~~~-~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~ 579 (712)
|+...+. ++..+..+...|... +++++|+..+++..+.| +...+..+...|...| ++++|+++|++..
T Consensus 282 ~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 282 YRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 8887643 556677788888877 89999999999998864 4456666777776656 8899999999987
Q ss_pred hhcCCCCchHHHHHHHHHhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccCC
Q 005136 580 PIYNIKPNGRHYTCVVDMLSR----SGRLSEAEDFINSMPFEPDSNAWASLLSGCKT----YKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 580 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 651 (712)
+. .++..+..|+.+|.. .+++++|..++++.....++..+..+...|.. .++.++|...++++.+..|
T Consensus 359 ~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 359 AK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 32 467888899999988 88999999999987434567778888888877 8999999999999999984
Q ss_pred C---CCchHHHHHHHHHhc
Q 005136 652 E---HPAGYVLLSNIYASA 667 (712)
Q Consensus 652 ~---~~~~~~~l~~~~~~~ 667 (712)
+ ++.+...|+.++...
T Consensus 435 ~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 435 NLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp CHHHHHHHHHHHTTSCHHH
T ss_pred CCcCCHHHHHHHHhcCHhH
Confidence 4 788888888776654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=6.8e-18 Score=164.76 Aligned_cols=219 Identities=15% Similarity=0.157 Sum_probs=63.7
Q ss_pred cCCChhHhHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCC-
Q 005136 68 GSRKSLEANEIVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPF- 146 (712)
Q Consensus 68 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 146 (712)
+.|++++|.+.++++..|+ +|..|+.++.+.|++++|.+.|.+. +|..+|..++..+...|++++|+.+++...+
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 5566667777777664443 6667777777777777777766543 4555666666666666666666665554332
Q ss_pred -CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHH
Q 005136 147 -QNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSL 225 (712)
Q Consensus 147 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 225 (712)
+++.+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.++.|...|..+ ..|..+
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~L 154 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 154 (449)
T ss_dssp ------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHH
Confidence 334556666666666666666665553 245556666666666666666666666644 356666
Q ss_pred HHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHH
Q 005136 226 ITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFR 305 (712)
Q Consensus 226 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (712)
+.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|++++|+.+++
T Consensus 155 A~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666666666666655 255566666666666666666655544433 222223345555556666666666665
Q ss_pred HHHh
Q 005136 306 QMTR 309 (712)
Q Consensus 306 ~m~~ 309 (712)
....
T Consensus 232 ~aL~ 235 (449)
T 1b89_A 232 AALG 235 (449)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 5543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-15 Score=159.94 Aligned_cols=363 Identities=12% Similarity=0.079 Sum_probs=298.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCChHHHH
Q 005136 300 AFRLFRQMTRYSFKPNTSCFSIVLSALAS----LKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSK----CGETKDGR 371 (712)
Q Consensus 300 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 371 (712)
++..++...+. .+...+..+...+.. .++++.|...++...+.| +...+..|...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 45555555553 355666666666666 789999999999998875 66778888999998 89999999
Q ss_pred HHHHhhhcCCCCceeeHHHHHHHHhc----cCChhhHHHHhhcCCCC-CcccHHHHHHHHHh----cCChhHHHHHHHHH
Q 005136 372 LVFDSIVEKDVAHVVSWNSMIGGYGL----NGQMEEAKELFDNMPKR-NDVSWSAIISGYLE----HKQFDLVFAVFNEM 442 (712)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 442 (712)
..|++..+.+ +..++..+...|.. .+++++|++.|++..+. ++..+..+...|.. .+++++|...|++.
T Consensus 100 ~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 100 IWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9999998765 45667778888877 78999999999987654 66788889988887 78999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCChHHHHHHhccCCC
Q 005136 443 LLSGEIPNKSTFSSVLCASAS----VASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAK----SGDIESSRRVFDRMPD 514 (712)
Q Consensus 443 ~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 514 (712)
.+.| +...+..+...|.. .+++++|..++.+..+.+ +......+..+|.. .+++++|...|++..+
T Consensus 178 ~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 178 AEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred HHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 9875 56677777777776 899999999999998865 45677778888876 7899999999998764
Q ss_pred -CCcchHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc-----CcHHHHHHHHHhcchhcCC
Q 005136 515 -KNEISWTVMVRGLAE----SGYAKESINLFEEMEKTSITPNELTILSVLFACSHS-----GLVDKGLKYFNSMEPIYNI 584 (712)
Q Consensus 515 -~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~ 584 (712)
.+...+..+...|.. .+++++|++.|++..+.| +...+..+...|... +++++|+..|++..+.
T Consensus 252 ~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--- 325 (490)
T 2xm6_A 252 QGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--- 325 (490)
T ss_dssp TTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT---
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc---
Confidence 456677778888887 899999999999998754 455666777777766 8999999999998732
Q ss_pred CCchHHHHHHHHHhhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccCCCCCchH
Q 005136 585 KPNGRHYTCVVDMLSRSG---RLSEAEDFINSMPFEPDSNAWASLLSGCKT----YKNEQIAERAVKNLWKLAEEHPAGY 657 (712)
Q Consensus 585 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~ 657 (712)
.+...+..++.+|...| ++++|+.++++.....++..+..+...|.. .++.++|...++++.+. .++.++
T Consensus 326 -~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~ 402 (490)
T 2xm6_A 326 -GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQ 402 (490)
T ss_dssp -TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred -CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHH
Confidence 35677888999988766 789999999988444678888888888887 89999999999999875 468899
Q ss_pred HHHHHHHHh----cCCchhHHHHHHHHHhCCC
Q 005136 658 VLLSNIYAS----AGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 658 ~~l~~~~~~----~g~~~eA~~~~~~~~~~~~ 685 (712)
..|+.+|.. .+++++|..++++..+.+.
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999999998 8999999999999998774
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-16 Score=166.15 Aligned_cols=385 Identities=10% Similarity=-0.025 Sum_probs=222.1
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhC-----C---CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcC-------
Q 005136 282 VSWSVMIARYNQSGYPEEAFRLFRQMTRY-----S---FKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIG------- 346 (712)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------- 346 (712)
..||.|...+...|++++|++.|++..+. + .+....+|..+..++...|++++|...++.+.+..
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 35666666666666666666666655321 1 12234566667777777777777777766665421
Q ss_pred CCCcHHHHHHHHHHHHhc--CChHHHHHHHHhhhcCCCCceeeHHHHHHHH---hccCChhhHHHHhhcCCC--C-Cccc
Q 005136 347 IEKDVFISNALIDLYSKC--GETKDGRLVFDSIVEKDVAHVVSWNSMIGGY---GLNGQMEEAKELFDNMPK--R-NDVS 418 (712)
Q Consensus 347 ~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~--~-~~~~ 418 (712)
......++..+..++... +++++|...|++..+.+|.++..+..+...+ ...++.++|++.+++..+ | +..+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 011234555554444443 4677888888888777766666655555443 344566666666655432 2 3334
Q ss_pred HHHHHHHHH----hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 005136 419 WSAIISGYL----EHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTD 494 (712)
Q Consensus 419 ~~~l~~~~~----~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 494 (712)
+..+...+. ..+++++|...+++..... +.+...+..+...+...|++++|...+.+..+.. +.+..++..+..
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 289 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGC 289 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHH
Confidence 444444333 3356677788887776653 4455667777777888888888888888777653 334555555655
Q ss_pred HHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHH
Q 005136 495 TYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLK 573 (712)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 573 (712)
+|...+....+... ..........+.++.|...+++..+. .| +...+..+...+...|++++|+.
T Consensus 290 ~y~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 290 CYRAKVFQVMNLRE------------NGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp HHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhhHHH------------HHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHH
Confidence 55432211111000 00011112233467888888888874 44 34667888889999999999999
Q ss_pred HHHhcchhcCCCCchH----HHHHHHHH-hhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 005136 574 YFNSMEPIYNIKPNGR----HYTCVVDM-LSRSGRLSEAEDFINSM-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLW 647 (712)
Q Consensus 574 ~~~~~~~~~~~~p~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 647 (712)
.|+++.+. .|+.. .+..++.. +...|++++|+..+++. .+.|+..... +....+..++++.+
T Consensus 356 ~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l 423 (472)
T 4g1t_A 356 YFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMRL 423 (472)
T ss_dssp HHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHH
Confidence 99988732 33322 23344433 34788999999999886 5566643332 23345677888899
Q ss_pred ccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCcccEE
Q 005136 648 KLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWV 694 (712)
Q Consensus 648 ~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~ 694 (712)
+.+|+++.++..||.+|...|++++|++.+++.++.+...+...+|+
T Consensus 424 ~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 424 SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 99999999999999999999999999999999999876655555554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-16 Score=153.65 Aligned_cols=240 Identities=10% Similarity=0.050 Sum_probs=174.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCC-CCchhhHHHHHHHHHhcC
Q 005136 422 IISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGF-PYDVFLGTALTDTYAKSG 500 (712)
Q Consensus 422 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 500 (712)
+.++|...|+++.|+..++. .-+|+..++..+...+...++.++|.+.++++...+. +.+...+..+..++...|
T Consensus 40 l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 34444444555444554433 1345556666666667777777777777777666553 334556667778889999
Q ss_pred ChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHhcccCcHHHHHHHHHh
Q 005136 501 DIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTI---LSVLFACSHSGLVDKGLKYFNS 577 (712)
Q Consensus 501 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~ 577 (712)
++++|.+.+++ ..+...+..++..+.+.|++++|.+.++++.+. .|+.... ..++..+...|++++|..+|++
T Consensus 116 ~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 116 NPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp CHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999998 567778888999999999999999999999985 5665322 1233444456899999999999
Q ss_pred cchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHH-HHHHHHHHhccCCCC
Q 005136 578 MEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQI-AERAVKNLWKLAEEH 653 (712)
Q Consensus 578 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~ 653 (712)
+.+. .| +...++.++.++.+.|++++|...+++. ...| +..++..++..+...|+.++ +.++++++++++|++
T Consensus 192 ~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 192 MADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 9854 44 7888999999999999999999999986 4445 57788888888888888865 678999999999999
Q ss_pred CchHHHHHHHHHhcCCchhHHHH
Q 005136 654 PAGYVLLSNIYASAGRWIDAMNV 676 (712)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~eA~~~ 676 (712)
+.+.. ...+.+.+++|..-
T Consensus 269 ~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 269 PFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHH----HHHHHHHHHHHHHH
T ss_pred hHHHH----HHHHHHHHHHHHHH
Confidence 87654 34444555555443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-15 Score=158.22 Aligned_cols=409 Identities=11% Similarity=0.062 Sum_probs=286.6
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005136 249 DVVSWTVILDVFIEMGDLGEARRIFDEMPE--R-NEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSA 325 (712)
Q Consensus 249 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 325 (712)
+...|..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|..+|+++... .|+...+..++..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 5668888888 4788999999999999875 3 4557888999999999999999999999873 4777766666643
Q ss_pred H-hccCChhhHHH----HHHHHHHc-CCCC-cHHHHHHHHHHHHh---------cCChHHHHHHHHhhhcCCCCc--eee
Q 005136 326 L-ASLKALRSGMH----VHAHVLKI-GIEK-DVFISNALIDLYSK---------CGETKDGRLVFDSIVEKDVAH--VVS 387 (712)
Q Consensus 326 ~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~--~~~ 387 (712)
. ...|+.+.|.+ +++..+.. |..| +...|...+..... .|+++.|..+|++.... |.. ...
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~ 167 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQL 167 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHH
Confidence 3 34567777665 66666553 5443 45677777776655 68889999999998873 211 122
Q ss_pred HHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH------HHCC---CCCCH-------
Q 005136 388 WNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEM------LLSG---EIPNK------- 451 (712)
Q Consensus 388 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~g---~~p~~------- 451 (712)
|..........|. ..+..++. ...+++..|..++... .+.. ++|+.
T Consensus 168 ~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 3222211100110 01111111 1234455666665542 1211 23431
Q ss_pred -HHHHHHHHHHhc----cCch----HHHHHHHHHHHHcCCCCchhhHHHHHHHHHh-------cCChH-------HHHHH
Q 005136 452 -STFSSVLCASAS----VASL----EKGKDLHGKIIKLGFPYDVFLGTALTDTYAK-------SGDIE-------SSRRV 508 (712)
Q Consensus 452 -~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~ 508 (712)
..+...+..... .++. .++..+++++.... +.+..++..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 334433332221 1232 36677888887752 5567788888887775 68987 89999
Q ss_pred hccCCC---C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHhcchhc
Q 005136 509 FDRMPD---K-NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE--LTILSVLFACSHSGLVDKGLKYFNSMEPIY 582 (712)
Q Consensus 509 ~~~~~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 582 (712)
|++..+ | +...|..++..+...|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|..+|++..+.
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~- 385 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED- 385 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 998763 3 466788999999999999999999999999 56753 47888888888999999999999999833
Q ss_pred CCCC-chHHHHHHHHH-hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc---
Q 005136 583 NIKP-NGRHYTCVVDM-LSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA--- 655 (712)
Q Consensus 583 ~~~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--- 655 (712)
.| +...+...+.. +...|+.++|..+|++. ...| +...|..++..+...|+.++|..++++++...|.+|.
T Consensus 386 --~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 386 --ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp --TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred --cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 44 34444433333 33689999999999987 3344 4788888888899999999999999999998877765
Q ss_pred -hHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 656 -GYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 656 -~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
++..++......|+.+.+..+.+++.+.-+
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 788888888899999999999999887543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=9e-17 Score=161.65 Aligned_cols=257 Identities=11% Similarity=0.039 Sum_probs=194.0
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005136 416 DVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDT 495 (712)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 495 (712)
...+..++..+.+.|++++|...|+++.... +.+...+..+...+...|++++|...+.++.+.. +.+...+..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446666666666667777777777776653 3456667777777777777777777777777653 3456667777777
Q ss_pred HHhcCChHHHHHHhccCCCCC-------------cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHH
Q 005136 496 YAKSGDIESSRRVFDRMPDKN-------------EISWTVMVRGLAESGYAKESINLFEEMEKTSITP---NELTILSVL 559 (712)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~ 559 (712)
|...|++++|...++++.+.+ ...+..+...+...|++++|++.++++.+. .| +...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHHH
Confidence 777777777777777665311 122344577888999999999999999985 44 467888999
Q ss_pred HHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCH
Q 005136 560 FACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNE 636 (712)
Q Consensus 560 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~ 636 (712)
..+...|++++|+..|+++.+. .| +..++..++.+|...|++++|...++++ ...|+ ...+..+...|...|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999998843 55 6889999999999999999999999987 44454 78888899999999999
Q ss_pred HHHHHHHHHHhccCCC------------CCchHHHHHHHHHhcCCchhHHHHHHH
Q 005136 637 QIAERAVKNLWKLAEE------------HPAGYVLLSNIYASAGRWIDAMNVRKL 679 (712)
Q Consensus 637 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~eA~~~~~~ 679 (712)
++|...+++++++.|+ +..++..|+.++...|+.+.|..+.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999998877 367899999999999999988887654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=157.37 Aligned_cols=259 Identities=11% Similarity=0.008 Sum_probs=188.9
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 005136 418 SWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYA 497 (712)
Q Consensus 418 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 497 (712)
.+..++..+...|++++|..+|+++.... +.+...+..+...+...|++++|...+.++.+.. +.+...+..+..++.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34455555555555555566666665542 2344555555566666666666666666665542 334555666666666
Q ss_pred hcCChHHHHHHhccCCC---CCcchHHHH--------------HH-HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005136 498 KSGDIESSRRVFDRMPD---KNEISWTVM--------------VR-GLAESGYAKESINLFEEMEKTSITPNELTILSVL 559 (712)
Q Consensus 498 ~~g~~~~A~~~~~~~~~---~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 559 (712)
..|++++|...++.+.+ .+...+..+ .. .+...|++++|++.++++.+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 66666666666665542 122222222 22 3677889999999999998852 33567888899
Q ss_pred HHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCH
Q 005136 560 FACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNE 636 (712)
Q Consensus 560 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 636 (712)
..+...|++++|...++++.+. .| +...+..++.++...|++++|...++++ ...| +...+..+...+...|++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 9999999999999999998843 45 6788999999999999999999999987 3334 577888888899999999
Q ss_pred HHHHHHHHHHhccCCC------------CCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 637 QIAERAVKNLWKLAEE------------HPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 637 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
++|...++++++..|+ ++.++..++.++.+.|++++|..++++.++
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999 788999999999999999999999876544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=153.00 Aligned_cols=248 Identities=9% Similarity=0.004 Sum_probs=200.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 005136 423 ISGYLEHKQFDLVFAVFNEMLLSGEIPNK--STFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSG 500 (712)
Q Consensus 423 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 500 (712)
++-....|++..|+..++.... ..|+. .....+..++...|+++.|...++. .-+|+...+..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3445667888888888877543 33543 3456677899999999999876644 24567788888999999999
Q ss_pred ChHHHHHHhccCC----CC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHH
Q 005136 501 DIESSRRVFDRMP----DK-NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYF 575 (712)
Q Consensus 501 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 575 (712)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 455677788999999999999999987 456778889999999999999999999
Q ss_pred HhcchhcCCCCchHHH---HHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 005136 576 NSMEPIYNIKPNGRHY---TCVVDMLSRSGRLSEAEDFINSM--PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLA 650 (712)
Q Consensus 576 ~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 650 (712)
+++.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...+..+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999844 4653211 22334455669999999999998 234568888889999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchh-HHHHHHHHHhCCC
Q 005136 651 EEHPAGYVLLSNIYASAGRWID-AMNVRKLMTEKGL 685 (712)
Q Consensus 651 p~~~~~~~~l~~~~~~~g~~~e-A~~~~~~~~~~~~ 685 (712)
|+++.++..++.++...|+.++ +.++++++++..+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999987 5789999988654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=9.9e-15 Score=154.36 Aligned_cols=368 Identities=9% Similarity=0.057 Sum_probs=212.3
Q ss_pred CCCchhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcCC--CCcchHHHHH
Q 005136 17 FNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNG--FDLVVHNCMI 94 (712)
Q Consensus 17 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~ 94 (712)
.|-+...|..++. +...|+++.|+.+++++++..+ .+...|..++..+.+.|+++.|..+|++... |+...|...+
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 3556778888887 4677888888888888887753 3677788888888888888888888888733 6666666666
Q ss_pred HHH-HhcCChHHHHH----HHhhCCC------CChhHHHHHHHHHHc---------cCChHHHHHHhhhCCC-CCc---c
Q 005136 95 NAN-IQWGNLEEAQR----LFDGMPE------RNEVSWTALISGFMK---------HGRVEESMWYFERNPF-QNV---I 150 (712)
Q Consensus 95 ~~~-~~~g~~~~A~~----~~~~~~~------~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~-~~~---~ 150 (712)
... ...|+++.|.. +|++..+ .+...|...+....+ .|+++.|+.+|++... |.. .
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 433 34567666654 5544321 234556666655443 5666677776665332 211 1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHH------hC---CCCC---
Q 005136 151 SWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFK------AG---FEKH--- 218 (712)
Q Consensus 151 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~---~~~~--- 218 (712)
.|..........|. .+...++. ...+++..|..++..+.. .. ++|+
T Consensus 167 ~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 167 LWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 12111110000000 00000000 123344555544443211 10 1222
Q ss_pred -----ccHHHHHHHHHHcc----CCh----HHHHHHHhhcCC---CCcchHHHHHHHHHh-------cCCHH-------H
Q 005136 219 -----VSVCNSLITLSLKM----GEV----DLARSVFDRMEK---RDVVSWTVILDVFIE-------MGDLG-------E 268 (712)
Q Consensus 219 -----~~~~~~li~~~~~~----~~~----~~a~~~~~~~~~---~~~~~~~~ll~~~~~-------~~~~~-------~ 268 (712)
...|...+...... ++. ..+..+|++... .+...|..++..+.+ .|+++ +
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 12344443332221 122 245556665554 244456666655554 56665 6
Q ss_pred HHHHHhhCCC---C-CceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCChhhHHHHHHHH
Q 005136 269 ARRIFDEMPE---R-NEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNT--SCFSIVLSALASLKALRSGMHVHAHV 342 (712)
Q Consensus 269 a~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~ 342 (712)
|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|..++..+.+.|+++.|..+++..
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 7777766653 2 455777788888888888888888888887 44542 46777777777778888888888877
Q ss_pred HHcCCCCcHHHHHHHHHH-HHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcC
Q 005136 343 LKIGIEKDVFISNALIDL-YSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNM 411 (712)
Q Consensus 343 ~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 411 (712)
.+.. +.+...+...+.. +...|+.++|..+|+...+..+.+...|..++..+.+.|+.++|..+|++.
T Consensus 383 l~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 383 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred Hhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 7652 1123333322222 335778888888888777766656677777777777777777774444443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-16 Score=156.52 Aligned_cols=231 Identities=12% Similarity=0.005 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHH
Q 005136 451 KSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGL 527 (712)
Q Consensus 451 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 527 (712)
...+..+...+.+.|++++|..+++++.+.. +.+...+..+..+|...|++++|...|+++. +.+...|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4457778888999999999999999999875 5578889999999999999999999999876 34577899999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHH
Q 005136 528 AESGYAKESINLFEEMEKTSITPNEL-----------TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVD 596 (712)
Q Consensus 528 ~~~~~~~~A~~~~~~~~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 596 (712)
...|++++|++.++++.+. .|+.. .+..+...+...|++++|+.+|+++.....-.++..++..++.
T Consensus 144 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999883 44432 2234577889999999999999999855222225789999999
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHH
Q 005136 597 MLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAM 674 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~ 674 (712)
+|...|++++|...++++ ...| +...+..+...|...|++++|+..++++++..|+++.++..++.+|.+.|++++|+
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999987 3334 58889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCC
Q 005136 675 NVRKLMTEKG 684 (712)
Q Consensus 675 ~~~~~~~~~~ 684 (712)
..++++++..
T Consensus 302 ~~~~~al~~~ 311 (365)
T 4eqf_A 302 SNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999998754
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-16 Score=157.89 Aligned_cols=119 Identities=10% Similarity=0.029 Sum_probs=61.1
Q ss_pred hcCCHHHHHH-HHhhCCC--C-----CceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChh
Q 005136 262 EMGDLGEARR-IFDEMPE--R-----NEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALR 333 (712)
Q Consensus 262 ~~~~~~~a~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 333 (712)
..|++++|.. .|++... + +...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3456666666 5554432 1 23455666666666666666666666666532 234445555555555666666
Q ss_pred hHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC
Q 005136 334 SGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDV 382 (712)
Q Consensus 334 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 382 (712)
+|...++.+.+.. +.+..++..+..+|...|++++|...|+++....+
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 163 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 6666666555543 22445555555555556666666666555555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-14 Score=151.29 Aligned_cols=390 Identities=11% Similarity=0.018 Sum_probs=210.5
Q ss_pred CccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCC----C-CCceeHHHHHHHHH
Q 005136 218 HVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMP----E-RNEVSWSVMIARYN 292 (712)
Q Consensus 218 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~-~~~~~~~~l~~~~~ 292 (712)
....|+.|...+...|++++|++.|++. ++++.... . ....+|+.+...|.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kA------------------------l~~~~~~~~~~~~~~~~~~~~nla~~y~ 105 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKA------------------------EELIQQEHADQAEIRSLVTWGNYAWVYY 105 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------HHHHHHHSGGGCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------------HHHHHhcCccccchHHHHHHHHHHHHHH
Confidence 3456777777777777777777777633 22222111 1 22345666666666
Q ss_pred hcCChhHHHHHHHHHHhC-----C-CCC-CHHHHHHHHHHHhc--cCChhhHHHHHHHHHHcCCCCcHHHHHHHHHH---
Q 005136 293 QSGYPEEAFRLFRQMTRY-----S-FKP-NTSCFSIVLSALAS--LKALRSGMHVHAHVLKIGIEKDVFISNALIDL--- 360 (712)
Q Consensus 293 ~~~~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--- 360 (712)
..|++++|...+++..+. + ..+ ...++.....++.. .+++++|...|+...+.. +.++..+..+..+
T Consensus 106 ~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~ 184 (472)
T 4g1t_A 106 HMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYR 184 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 666666666666655321 0 111 23344443333332 345777777777776653 1233444444333
Q ss_pred HHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHh----ccCChhhHHHHhhcCC---CCCcccHHHHHHHHHhcCChh
Q 005136 361 YSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYG----LNGQMEEAKELFDNMP---KRNDVSWSAIISGYLEHKQFD 433 (712)
Q Consensus 361 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 433 (712)
+...++.++|...+++..+.++.+..++..+...+. ..++.++|.+.+++.. ..+..++..+...|...|+++
T Consensus 185 l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 264 (472)
T 4g1t_A 185 LDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPD 264 (472)
T ss_dssp HHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHH
T ss_pred hcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchH
Confidence 334566677777777777766655555555554443 3456677777777654 234556778888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC
Q 005136 434 LVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP 513 (712)
Q Consensus 434 ~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (712)
+|...|++..+.. +-+..++..+...|...+.... ... ... ........+..+.|...++...
T Consensus 265 ~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~---------~~~-~~~------~~~~~~~~~~~~~A~~~~~~a~ 327 (472)
T 4g1t_A 265 KAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVM---------NLR-ENG------MYGKRKLLELIGHAVAHLKKAD 327 (472)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhh---------hHH-HHH------HHHHHHHHhhHHHHHHHHHHHh
Confidence 8899999998863 3345555555544432111100 000 000 0011112233566777776654
Q ss_pred ---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HhcccCcHHHHHHHHHhcchhcCCCCc
Q 005136 514 ---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNEL--TILSVLF-ACSHSGLVDKGLKYFNSMEPIYNIKPN 587 (712)
Q Consensus 514 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~p~ 587 (712)
..+...+..+...+...|++++|++.|++..+....|... .+..+.. .....|++++|+..|++.. .+.|+
T Consensus 328 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~ 404 (472)
T 4g1t_A 328 EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQK 404 (472)
T ss_dssp HHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCC
T ss_pred hcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcc
Confidence 3456678899999999999999999999999853333221 2223322 2357899999999999887 34664
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-PF-EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLS 661 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 661 (712)
....... ...+..++++. .. +.+..++..+...|...|++++|++.+++++++.|.+|.+...+|
T Consensus 405 ~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 405 SREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp CHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred cHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 3322222 22233344433 22 334678888999999999999999999999999999998877665
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=139.26 Aligned_cols=193 Identities=12% Similarity=0.044 Sum_probs=155.9
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 005136 483 PYDVFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSV 558 (712)
Q Consensus 483 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l 558 (712)
+++...+..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|+..+++..+ +.|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 55667778888889999999999999988753 3556788889999999999999999999998 4564 4678888
Q ss_pred HHHhccc-----------CcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 005136 559 LFACSHS-----------GLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWAS 625 (712)
Q Consensus 559 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 625 (712)
..++... |++++|+..|++..+ +.| +...+..++.+|...|++++|+..+++. ....+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8889998 999999999999984 367 6888999999999999999999999987 22277888999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 005136 626 LLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLM 680 (712)
Q Consensus 626 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 680 (712)
+..++...|++++|+..++++++.+|+++.++..++.++.+.|++++|++.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-15 Score=149.96 Aligned_cols=271 Identities=11% Similarity=0.025 Sum_probs=149.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC---CCcccHHHHHHHHHhcC
Q 005136 354 SNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK---RNDVSWSAIISGYLEHK 430 (712)
Q Consensus 354 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 430 (712)
+..+...+...|++++|..+|+++.+..+.+..++..+...+...|++++|...++++.+ .+..++..++..+...|
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 334444555555555555555555554444444455555555555555555444433321 12334444444555555
Q ss_pred ChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHH-HH-HHHhcCChHHHHH
Q 005136 431 QFDLVFAVFNEMLLSGEIPNK-STFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTAL-TD-TYAKSGDIESSRR 507 (712)
Q Consensus 431 ~~~~a~~~~~~~~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~A~~ 507 (712)
++++|...++++.... |+. ..+..+... .++......+ .. .+...|++++|..
T Consensus 104 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 104 NANAALASLRAWLLSQ--PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp CHHHHHHHHHHHHHTS--TTTTTC------------------------------------------CCTTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 5555566666666542 221 111111000 0000000011 11 2445555666666
Q ss_pred HhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCC
Q 005136 508 VFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNI 584 (712)
Q Consensus 508 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 584 (712)
.++++. ..+...+..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...|+++.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--- 235 (327)
T 3cv0_A 160 LLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--- 235 (327)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Confidence 665543 2244566667777777777777777777777632 224556677777777777777777777777632
Q ss_pred CC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 005136 585 KP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-------------DSNAWASLLSGCKTYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 585 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 649 (712)
.| +...+..++.+|.+.|++++|...++++ ...| +...+..+..++...|+.++|...++++++.
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34 5667777777788888888888777765 2222 2556667777777888888888877777665
Q ss_pred CCC
Q 005136 650 AEE 652 (712)
Q Consensus 650 ~p~ 652 (712)
.|+
T Consensus 316 ~~~ 318 (327)
T 3cv0_A 316 FAK 318 (327)
T ss_dssp HHH
T ss_pred cch
Confidence 443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.1e-15 Score=140.05 Aligned_cols=224 Identities=10% Similarity=0.059 Sum_probs=164.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 005136 418 SWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYA 497 (712)
Q Consensus 418 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 497 (712)
.+..+...+...|++++|...|++..+.. .+...+..+...+...|++++|...+.++.+.....
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------- 71 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------- 71 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-------------
Confidence 45555555666666666666666655544 444445555555555555555555554443321000
Q ss_pred hcCChHHHHHHhccCCCCC----cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHH
Q 005136 498 KSGDIESSRRVFDRMPDKN----EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLK 573 (712)
Q Consensus 498 ~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 573 (712)
.++ ...+..+...+...|++++|++.++++.+ +.|+.. .+...|++++|..
T Consensus 72 ----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 72 ----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELK 126 (258)
T ss_dssp ----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHH
T ss_pred ----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHH
Confidence 011 35567778888888999999999988888 456533 3556688999999
Q ss_pred HHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 005136 574 YFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLA 650 (712)
Q Consensus 574 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 650 (712)
.++++.. ..| +...+..++.++...|++++|...+++. ... .+...+..+...+...|++++|...++++++..
T Consensus 127 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 127 KAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9998873 356 6778889999999999999999999987 333 357788888888999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 651 EEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 651 p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
|+++.++..++.++...|++++|++.+++.++..
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999988754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-14 Score=136.12 Aligned_cols=234 Identities=13% Similarity=0.061 Sum_probs=173.8
Q ss_pred eeeHHHHHHHHhccCChhhHHHHhhcCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHHHHH
Q 005136 385 VVSWNSMIGGYGLNGQMEEAKELFDNMPK--RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGE--IPN----KSTFSS 456 (712)
Q Consensus 385 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~p~----~~~~~~ 456 (712)
...+..+...+...|++++|+..+++..+ .+..++..+..++...|++++|...+++...... .|+ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45678889999999999999999987643 6677899999999999999999999999876431 112 456666
Q ss_pred HHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHH
Q 005136 457 VLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKES 536 (712)
Q Consensus 457 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 536 (712)
+...+...|++++|...+.++.+.. |+ ...+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~--------------------------------------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RT--------------------------------------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CC--------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--ch--------------------------------------hHHHHHHhHHHHH
Confidence 6677777777777777777666542 11 1234555667777
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 537 INLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 537 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
+..++++.. ..|+ ...+..+...+...|++++|+..|+++... .| +...+..++.+|.+.|++++|...+++.
T Consensus 125 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 125 LKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 777777776 3443 355667777777888888888888877633 34 5777888888888888888888888876
Q ss_pred -CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC------CCCCchHHHHHHH
Q 005136 615 -PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLA------EEHPAGYVLLSNI 663 (712)
Q Consensus 615 -~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 663 (712)
...| +...+..+...+...|++++|...+++++++. |++..++..+..+
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 3334 46777788888888999999999999998888 7777666666543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.1e-16 Score=162.74 Aligned_cols=143 Identities=9% Similarity=0.156 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHccCChHHHHHHhhhC-------CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHH
Q 005136 118 EVSWTALISGFMKHGRVEESMWYFERN-------PFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSI 190 (712)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 190 (712)
..+|++||++|++.|++++|.++|++| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 458999999999999999999999653 3689999999999999999999999999999999999999999999
Q ss_pred HHHHhcccch-HHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCC---C------CcchHHHHHHHH
Q 005136 191 CKACAEINDF-RLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEK---R------DVVSWTVILDVF 260 (712)
Q Consensus 191 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~------~~~~~~~ll~~~ 260 (712)
|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+. .+++..+++.. | .+.+...|...|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999984 78999999999999999999999998766554 44444444432 2 233444555666
Q ss_pred HhcC
Q 005136 261 IEMG 264 (712)
Q Consensus 261 ~~~~ 264 (712)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 6544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-14 Score=136.33 Aligned_cols=242 Identities=10% Similarity=-0.028 Sum_probs=107.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc--hhhHHHHHHHH
Q 005136 419 WSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYD--VFLGTALTDTY 496 (712)
Q Consensus 419 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 496 (712)
+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+.++.+....++ ...+..+..++
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344445555555555566666555532 11222444444455555555555555555444211111 11134444444
Q ss_pred HhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHH
Q 005136 497 AKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGL 572 (712)
Q Consensus 497 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 572 (712)
...|++++|...|++.. +.+...|..+...+...|++++|++.+++..+. .|+ ...+..+...+...+++++|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433 123334444444455555555555555444442 232 223333331222233555555
Q ss_pred HHHHhcchhcCCCC-chHHHHHHHHHhhhcCC---hHHHHHHHHhC----CCCCC------HHHHHHHHHHHhhcCCHHH
Q 005136 573 KYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGR---LSEAEDFINSM----PFEPD------SNAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 573 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~g~~~~ 638 (712)
..|+++.+. .| +...+..++.++...|+ +++|...+++. ...|+ ...+..+...|...|++++
T Consensus 163 ~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 163 SSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 555554422 33 34444445555554444 44444444443 11122 1334445555555666666
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHh
Q 005136 639 AERAVKNLWKLAEEHPAGYVLLSNIYAS 666 (712)
Q Consensus 639 a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 666 (712)
|...++++++++|+++.+...+..+...
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 6666666666666665555555544443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=5.2e-14 Score=135.04 Aligned_cols=240 Identities=9% Similarity=-0.046 Sum_probs=182.4
Q ss_pred cCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHH
Q 005136 429 HKQFDLVFAVFNEMLLSGEI---PNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESS 505 (712)
Q Consensus 429 ~~~~~~a~~~~~~~~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 505 (712)
.|++++|+..|+++.+.... .+...+..+...+...|++++|...+.++.+.. +.+...+..+..+|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 45667778888888775321 134567777778888888888888888887764 44677788888888888999999
Q ss_pred HHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhc
Q 005136 506 RRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIY 582 (712)
Q Consensus 506 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 582 (712)
...|+++. +.+...+..+...+...|++++|++.++++.+ ..|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 88888776 34567888899999999999999999999998 4676665555556667779999999999877743
Q ss_pred CCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCch
Q 005136 583 NIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAG 656 (712)
Q Consensus 583 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 656 (712)
.+++...+ .++..+...++.++|...+++. ...|. ...+..+...+...|++++|...++++++..|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 22343333 4777778888889999999886 33332 4677888888999999999999999999999987543
Q ss_pred HHHHHHHHHhcCCchhHHHHH
Q 005136 657 YVLLSNIYASAGRWIDAMNVR 677 (712)
Q Consensus 657 ~~~l~~~~~~~g~~~eA~~~~ 677 (712)
.+.++...|++++|++.+
T Consensus 252 ---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 ---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHhhHHHH
Confidence 477888899999998876
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-13 Score=141.99 Aligned_cols=344 Identities=10% Similarity=0.046 Sum_probs=233.2
Q ss_pred HHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh---HHHHHHHHhhhcCCCCceeeHHHHHHHHhcc
Q 005136 322 VLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGET---KDGRLVFDSIVEKDVAHVVSWNSMIGGYGLN 398 (712)
Q Consensus 322 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 398 (712)
+...+.+.|++++|.+.+....+.| +...+..|...|...|+. ++|...|++..+. +..++..+...+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhC
Confidence 5566677899999999999998876 334455566777778888 8999999998866 467777787755555
Q ss_pred C-----ChhhHHHHhhcCCCC-CcccHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHH
Q 005136 399 G-----QMEEAKELFDNMPKR-NDVSWSAIISGYLEHKQFD---LVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEK 469 (712)
Q Consensus 399 ~-----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~ 469 (712)
+ +.++|+..|++..++ ++..+..|...|...++.+ .+.+.+......|. ......+...|...+.+++
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGG
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCccc
Confidence 4 778999999887754 5668888999888776644 45555555555553 2344455566666676666
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcC---ChHHHHHHhccCCCC---CcchHHHHHHHHHHc----CChHHHHHH
Q 005136 470 GKDLHGKIIKLGFPYDVFLGTALTDTYAKSG---DIESSRRVFDRMPDK---NEISWTVMVRGLAES----GYAKESINL 539 (712)
Q Consensus 470 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~A~~~ 539 (712)
+......+.+.-...++..+..|..+|...| +.++|...|+...+. +...+..+...|... +++++|++.
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 5555444444333444558888889999999 889999999887643 233336677777554 689999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH-h--cccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcC-----ChHHHHHHH
Q 005136 540 FEEMEKTSITPNELTILSVLFA-C--SHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSG-----RLSEAEDFI 611 (712)
Q Consensus 540 ~~~~~~~~~~p~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~ 611 (712)
|++.. . -+...+..+... + ...+++++|+..|++..+. + +...+..|+.+|. .| ++++|..+|
T Consensus 240 ~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 240 LEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 99987 3 234455555555 3 5689999999999998732 2 6778888888887 55 999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCCchhHHHHHHHHHhC
Q 005136 612 NSMPFEPDSNAWASLLSGCKT----YKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYAS----AGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 612 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~ 683 (712)
++.- ..+......+...|.. ..+.++|..+++++.+ +.++.+...|+.+|.. ..+..+|..++++..+.
T Consensus 311 ~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 311 EKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 9988 6667777777766655 3499999999999876 4668899999999986 45899999999999888
Q ss_pred CCc
Q 005136 684 GLR 686 (712)
Q Consensus 684 ~~~ 686 (712)
|.+
T Consensus 388 g~~ 390 (452)
T 3e4b_A 388 DTP 390 (452)
T ss_dssp CCH
T ss_pred CCH
Confidence 754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-13 Score=139.47 Aligned_cols=336 Identities=10% Similarity=0.005 Sum_probs=153.4
Q ss_pred HHHHHhcCChHHHHHHHhhCCC-CChhHHHHHHHHHHccCCh---HHHHHHhhhCCCCCcccHHHHHHHHHhcC-----C
Q 005136 94 INANIQWGNLEEAQRLFDGMPE-RNEVSWTALISGFMKHGRV---EESMWYFERNPFQNVISWTAAICGFVQNG-----F 164 (712)
Q Consensus 94 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~g-----~ 164 (712)
...+.+.|++++|..+|++..+ .++..+..|...|...|+. ++|..+|++....+...+..+...+...| +
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 3444455555555555555433 2333444444555555555 56666665544445555555555444443 5
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHH---HHHHHHHHHHhCCCCCccHHHHHHHHHHccCC----hHH
Q 005136 165 SFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRL---GLSVFGLIFKAGFEKHVSVCNSLITLSLKMGE----VDL 237 (712)
Q Consensus 165 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----~~~ 237 (712)
+++|+..|++..+.|.. ..+..|...+...+..+. +.+.+......| ++.....+...|...+. .+.
T Consensus 90 ~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred HHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHH
Confidence 56677777666665432 244455555554443332 333333333333 23444455555555553 333
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHhcC---CHHHHHHHHhhCCC---CCceeHHHHHHHHHhc----CChhHHHHHHHHH
Q 005136 238 ARSVFDRMEKRDVVSWTVILDVFIEMG---DLGEARRIFDEMPE---RNEVSWSVMIARYNQS----GYPEEAFRLFRQM 307 (712)
Q Consensus 238 a~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~~~a~~~~~~m 307 (712)
+..+++.....++..+..+...|...| +.++|+..|++..+ ++...+..+...|... +++++|++.|+..
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 444444444444445555555555555 55555555554432 1222223444444332 4566666666665
Q ss_pred HhCCCCCCHHHHHHHHHH-H--hccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC-----ChHHHHHHHHhhhc
Q 005136 308 TRYSFKPNTSCFSIVLSA-L--ASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCG-----ETKDGRLVFDSIVE 379 (712)
Q Consensus 308 ~~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~ 379 (712)
. . -+...+..+... + ...+++++|...++...+.| +...+..|..+|. .| ++++|...|++..
T Consensus 244 a-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 244 A-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp G-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred c-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 5 2 222333333333 2 33566666666666666554 4445555555555 33 6666666666665
Q ss_pred CCCCceeeHHHHHHHHhc----cCChhhHHHHhhcCCCC-CcccHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 005136 380 KDVAHVVSWNSMIGGYGL----NGQMEEAKELFDNMPKR-NDVSWSAIISGYLE----HKQFDLVFAVFNEMLLSG 446 (712)
Q Consensus 380 ~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g 446 (712)
+.+..++..+...|.. ..+.++|...|+...++ ++.....|...|.. ..++.+|..+|+...+.|
T Consensus 315 --~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 315 --GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp --TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred --CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 2234445555544444 23556666666554432 34455555555543 235556666666665555
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-13 Score=129.37 Aligned_cols=229 Identities=6% Similarity=-0.005 Sum_probs=188.6
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC--CCcc----hHHHHHHH
Q 005136 453 TFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD--KNEI----SWTVMVRG 526 (712)
Q Consensus 453 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l~~~ 526 (712)
.+......+...|++++|...+.++.+.. +.+...+..+..+|...|++++|...+++..+ ++.. .|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34456677889999999999999998864 44566888899999999999999999988764 2333 38889999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCCh
Q 005136 527 LAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRL 604 (712)
Q Consensus 527 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 604 (712)
+...|++++|++.+++..+. .| +...+..+...+...|++++|+..|++.. ...| +...+..++..+...+++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999984 44 45788899999999999999999999998 3366 677888888344445699
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCC---HHHHHHHHHHHhccC---CCC-----CchHHHHHHHHHhcCCch
Q 005136 605 SEAEDFINSM-PFEPD-SNAWASLLSGCKTYKN---EQIAERAVKNLWKLA---EEH-----PAGYVLLSNIYASAGRWI 671 (712)
Q Consensus 605 ~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~ 671 (712)
++|...++++ ...|+ ...+..+...+...|+ +++|...++++++.. |+. ..++..++.+|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999987 44454 6777777777888888 888999999998875 442 258889999999999999
Q ss_pred hHHHHHHHHHhCCCcc
Q 005136 672 DAMNVRKLMTEKGLRK 687 (712)
Q Consensus 672 eA~~~~~~~~~~~~~~ 687 (712)
+|+++++++++..+..
T Consensus 239 ~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 239 KADAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCccH
Confidence 9999999999876543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=9.2e-13 Score=126.05 Aligned_cols=226 Identities=13% Similarity=0.029 Sum_probs=159.3
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHcCCCCchhhHH
Q 005136 415 NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASAS----VASLEKGKDLHGKIIKLGFPYDVFLGT 490 (712)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 490 (712)
++.++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|...+.+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---------- 71 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---------- 71 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----------
Confidence 34455566666666666666666666665522 23334444444444 44444444444444332
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc--
Q 005136 491 ALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAE----SGYAKESINLFEEMEKTSITPNELTILSVLFACSH-- 564 (712)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 564 (712)
.+...+..+...|.. .+++++|++.+++..+.+ +...+..+...|..
T Consensus 72 ------------------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 72 ------------------------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred ------------------------CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 234455566666666 778888888888877753 56677777777777
Q ss_pred --cCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cC
Q 005136 565 --SGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSR----SGRLSEAEDFINSMPFEPDSNAWASLLSGCKT----YK 634 (712)
Q Consensus 565 --~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g 634 (712)
.+++++|+..|++..+. + +...+..++.+|.. .+++++|...+++.....+...+..+...|.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 88888888888887732 2 56677778888877 88899999888887323456777777778888 89
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCCchhHHHHHHHHHhCCCc
Q 005136 635 NEQIAERAVKNLWKLAEEHPAGYVLLSNIYAS----AGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 635 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~ 686 (712)
++++|...++++.+..| +.++..|+.+|.. .|++++|++++++..+.|.+
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 99999999999998865 7889999999999 99999999999999887754
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-13 Score=127.76 Aligned_cols=198 Identities=6% Similarity=-0.051 Sum_probs=161.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 005136 486 VFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFAC 562 (712)
Q Consensus 486 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 562 (712)
...+..+...+...|++++|...++++. ..+...+..+...+...|++++|++.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3445566667777777777777777654 2355677888888899999999999999988842 33567788888889
Q ss_pred cccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHH
Q 005136 563 SHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIA 639 (712)
Q Consensus 563 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 639 (712)
...|++++|.++++++.. .+..| +...+..++.++...|++++|...++++ ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999884 23456 5778888999999999999999999887 3334 477788888889999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 640 ERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 640 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
...++++++..|+++..+..++.++...|++++|.++++++.+..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999988654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-15 Score=158.41 Aligned_cols=144 Identities=8% Similarity=0.071 Sum_probs=109.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhC-------CCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005136 252 SWTVILDVFIEMGDLGEARRIFDEM-------PERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLS 324 (712)
Q Consensus 252 ~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 324 (712)
||+++|.+|++.|++++|..+|++| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 5666666666666666666666443 258999999999999999999999999999999999999999999999
Q ss_pred HHhccCCh-hhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCC------ceeeHHHHHHHHhc
Q 005136 325 ALASLKAL-RSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVA------HVVSWNSMIGGYGL 397 (712)
Q Consensus 325 ~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~ 397 (712)
++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+. .+++..+++...-.| ...+...|...|.+
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 99999985 78999999999999999999999998766554 333444444221111 23344455566655
Q ss_pred cC
Q 005136 398 NG 399 (712)
Q Consensus 398 ~~ 399 (712)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 44
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-13 Score=133.97 Aligned_cols=245 Identities=12% Similarity=0.072 Sum_probs=194.6
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-hHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 005136 416 DVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVAS-LEKGKDLHGKIIKLGFPYDVFLGTALTD 494 (712)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 494 (712)
...|..+...+...|++++|+..|++.+... +-+...+..+..++...|+ +++|...++++.+.. +.+...+..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3467788888888899999999999988763 3456677777888888886 999999999988865 456778888888
Q ss_pred HHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcc-cCcHH
Q 005136 495 TYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSH-SGLVD 569 (712)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~~ 569 (712)
++...|++++|...|+++. ..+...|..+..++...|++++|+..++++++ +.| +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 8999999999999998876 34667888889999999999999999999998 455 45678888888887 56546
Q ss_pred HH-----HHHHHhcchhcCCCC-chHHHHHHHHHhhhcC--ChHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcC------
Q 005136 570 KG-----LKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSG--RLSEAEDFINSMPFEPD-SNAWASLLSGCKTYK------ 634 (712)
Q Consensus 570 ~a-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g------ 634 (712)
+| +..|+++.. +.| +...|..++.++...| ++++|.+.++++...|+ ...+..++..|...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 477887773 467 6778888888888887 68899988888754554 566777777777653
Q ss_pred --C-HHHHHHHHHHH-hccCCCCCchHHHHHHHHHhc
Q 005136 635 --N-EQIAERAVKNL-WKLAEEHPAGYVLLSNIYASA 667 (712)
Q Consensus 635 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 667 (712)
+ .++|+.+++++ .+++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58899999999 899999888888888777654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-13 Score=121.04 Aligned_cols=165 Identities=14% Similarity=0.101 Sum_probs=145.1
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHH
Q 005136 516 NEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTC 593 (712)
Q Consensus 516 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 593 (712)
+..+|..+...+...|++++|++.|++.++ +.| +...+..+..++...|++++|+..++.+... .| +...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 456788899999999999999999999998 456 4567888899999999999999999998743 55 6778888
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 005136 594 VVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWI 671 (712)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 671 (712)
++..+...+++++|...+++. ...| +...+..+...+...|++++|+..++++++.+|+++.++..+|.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 899999999999999999887 3344 47778888888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCC
Q 005136 672 DAMNVRKLMTEKGL 685 (712)
Q Consensus 672 eA~~~~~~~~~~~~ 685 (712)
+|++.+++.++..+
T Consensus 159 ~A~~~~~~al~~~p 172 (184)
T 3vtx_A 159 EAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHhCCc
Confidence 99999999998654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=137.03 Aligned_cols=226 Identities=13% Similarity=0.104 Sum_probs=193.1
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC-hHHHHHHhccCC---CCCcchHHHHHHHH
Q 005136 452 STFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGD-IESSRRVFDRMP---DKNEISWTVMVRGL 527 (712)
Q Consensus 452 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~l~~~~ 527 (712)
..+..+...+...|++++|...+.++++.. +.+...+..+..++...|+ +++|+..|+++. ..+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456666777888999999999999999875 5567888999999999997 999999999887 34667899999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhh-cCCh
Q 005136 528 AESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSR-SGRL 604 (712)
Q Consensus 528 ~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~ 604 (712)
...|++++|+..|+++++ +.| +...|..+..++...|++++|+..|+++.+ +.| +...|+.++.+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999 556 557889999999999999999999999984 477 78899999999999 6666
Q ss_pred HHH-----HHHHHhC-CCCCC-HHHHHHHHHHHhhcC--CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC-------
Q 005136 605 SEA-----EDFINSM-PFEPD-SNAWASLLSGCKTYK--NEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAG------- 668 (712)
Q Consensus 605 ~~A-----~~~~~~~-~~~p~-~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 668 (712)
++| +..+++. ...|+ ...|..+...+...| ++++|...++++ +.+|+++.++..|+.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 888 4777776 44564 677888888888877 689999999998 899999999999999999975
Q ss_pred --CchhHHHHHHHH-HhCC
Q 005136 669 --RWIDAMNVRKLM-TEKG 684 (712)
Q Consensus 669 --~~~eA~~~~~~~-~~~~ 684 (712)
..++|+++++++ ++.+
T Consensus 331 ~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 258999999998 6654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.4e-13 Score=122.96 Aligned_cols=198 Identities=13% Similarity=0.055 Sum_probs=153.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 005136 486 VFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFAC 562 (712)
Q Consensus 486 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 562 (712)
...+..+...+...|++++|...++.+. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 4445556666666677777776666554 2345567777888888888888888888888742 33556777888888
Q ss_pred ccc-CcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHH
Q 005136 563 SHS-GLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 563 ~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 638 (712)
... |++++|...++++.+ .+..| +...+..++.++...|++++|...++++ ...| +...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 888 999999999988874 23344 4677888888999999999999998887 3334 47777888888889999999
Q ss_pred HHHHHHHHhccCC-CCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 639 AERAVKNLWKLAE-EHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 639 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
|...++++++..| +++..+..++.++...|+.++|..+++.+.+..+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 9999999999999 8888888888888999999999999888876543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-13 Score=128.63 Aligned_cols=198 Identities=10% Similarity=0.071 Sum_probs=142.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005136 485 DVFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFA 561 (712)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 561 (712)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|++.++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555566667777777777777776643 345567777888888888888888888888742 3355677788888
Q ss_pred hcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHH
Q 005136 562 CSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~ 638 (712)
+...|++++|...++++.+. .| +...+..++.++...|++++|...++++ ... .+...+..+...+...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 88889999999988888743 34 6777888888889999999999988887 333 356777778888889999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 639 AERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 639 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
|...++++++..|+++.++..++.++...|++++|+++++++++..+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 999999999999998899999999999999999999999998876543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.9e-13 Score=120.50 Aligned_cols=191 Identities=10% Similarity=0.021 Sum_probs=90.2
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 005136 415 NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTD 494 (712)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 494 (712)
+...+..+...+...|++++|...|++.++.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34455566666666666666677777766543 3345556666666666666666666666666543 334455555555
Q ss_pred HHHhc-----------CChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005136 495 TYAKS-----------GDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLF 560 (712)
Q Consensus 495 ~~~~~-----------g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 560 (712)
++... |++++|...+++.. +.+...|..+...+...|++++|+..|++.++.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 55555 44444444444433 1122334444444444444444444444444433 33344444444
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHH
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFIN 612 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 612 (712)
++...|++++|+..|+++.+. .| +...+..++.++.+.|++++|+..++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 444444444444444444321 33 33344444444444444444444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-13 Score=126.61 Aligned_cols=213 Identities=9% Similarity=0.063 Sum_probs=139.3
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005136 416 DVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDT 495 (712)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 495 (712)
...|..+...+...|++++|...|+++.... +.+...+.. +..+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~-----------------------------------la~~ 66 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYIN-----------------------------------FANL 66 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHH-----------------------------------HHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHH-----------------------------------HHHH
Confidence 3445555566666666666666666655532 223344444 4444
Q ss_pred HHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHH
Q 005136 496 YAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGL 572 (712)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 572 (712)
+...|++++|...++++. ..+...+..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|.
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 445555555555544433 2345566777778888888888888888888742 335567778888888999999999
Q ss_pred HHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 005136 573 KYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 573 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 649 (712)
..++++.+. .| +...+..++.++.+.|++++|...++++ ... .+...+..+...+...|++++|...++++++.
T Consensus 146 ~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 146 PYLQRAVEL---NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHh---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999988743 44 6778889999999999999999999887 333 34778888888899999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcC
Q 005136 650 AEEHPAGYVLLSNIYASAG 668 (712)
Q Consensus 650 ~p~~~~~~~~l~~~~~~~g 668 (712)
.|+++.++..++.+....|
T Consensus 223 ~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp CTTCHHHHHHHTC------
T ss_pred CcchHHHHHHHHHHHhhcc
Confidence 9999988888776655444
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-12 Score=120.40 Aligned_cols=208 Identities=10% Similarity=0.043 Sum_probs=141.2
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005136 416 DVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDT 495 (712)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 495 (712)
...+..++..+...|++++|...|+++.... +.+...+..+...+...|++++|...+.++.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 3445556666666666666666666655542 2233444444444444444444444444443321
Q ss_pred HHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHH
Q 005136 496 YAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKY 574 (712)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 574 (712)
..+...+..+...+...|++++|++.++++.+.+..|+ ...+..+...+...|++++|...
T Consensus 102 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 102 ------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22444566667777777888888888887776334453 35667777788888888888888
Q ss_pred HHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 005136 575 FNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 575 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 651 (712)
++++.+. .| +...+..++.++...|++++|...++++ ...| +...+..+...+...|+.++|.+.++++.+..|
T Consensus 164 ~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 164 FEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 8887743 44 5778888899999999999999999887 3333 466677777778899999999999999999999
Q ss_pred CCCchHHH
Q 005136 652 EHPAGYVL 659 (712)
Q Consensus 652 ~~~~~~~~ 659 (712)
+++.....
T Consensus 241 ~~~~~~~~ 248 (252)
T 2ho1_A 241 GSLEYQEF 248 (252)
T ss_dssp TSHHHHHH
T ss_pred CCHHHHHH
Confidence 98765543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=143.04 Aligned_cols=191 Identities=7% Similarity=-0.001 Sum_probs=164.7
Q ss_pred CchhhHHHHHHHHHhcCCh-HHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005136 484 YDVFLGTALTDTYAKSGDI-ESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVL 559 (712)
Q Consensus 484 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 559 (712)
.+...+..+...+...|++ ++|...|++.. ..+...|..+...|...|++++|++.|++..+ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 3556666677777777777 77777777664 23466788899999999999999999999998 568888888999
Q ss_pred HHhccc---------CcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhc--------CChHHHHHHHHhC-CCCC--
Q 005136 560 FACSHS---------GLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRS--------GRLSEAEDFINSM-PFEP-- 618 (712)
Q Consensus 560 ~~~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p-- 618 (712)
..+... |++++|+..|+++.+. .| +...+..++.+|... |++++|+..|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 999999 9999999999999843 66 688999999999998 9999999999988 4455
Q ss_pred --CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHH
Q 005136 619 --DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKL 679 (712)
Q Consensus 619 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 679 (712)
+...+..+..+|...|++++|...++++++++|+++.++..++.++...|++++|++.+.+
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6888999999999999999999999999999999999999999999999999999986554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.2e-12 Score=120.79 Aligned_cols=226 Identities=10% Similarity=-0.019 Sum_probs=167.4
Q ss_pred ceeeHHHHHHHHhccCChhhHHHHhhcCCCC-CcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005136 384 HVVSWNSMIGGYGLNGQMEEAKELFDNMPKR-NDVSWSAIISGYLE----HKQFDLVFAVFNEMLLSGEIPNKSTFSSVL 458 (712)
Q Consensus 384 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll 458 (712)
+..++..+...+...|++++|++.|++..++ +..++..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4667888889999999999999999988765 56688889999999 999999999999999876 566777777
Q ss_pred HHHhc----cCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHH----c
Q 005136 459 CASAS----VASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAE----S 530 (712)
Q Consensus 459 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~ 530 (712)
..+.. .+++++|...+++..+.+ +.. .+..+...|.. .
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~-------------------------------a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAE-------------------------------GCASLGGIYHDGKVVT 127 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH-------------------------------HHHHHHHHHHHCSSSC
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---Ccc-------------------------------HHHHHHHHHHcCCCcc
Confidence 77777 777788777777766543 233 34444455555 6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc----cCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhh----cC
Q 005136 531 GYAKESINLFEEMEKTSITPNELTILSVLFACSH----SGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSR----SG 602 (712)
Q Consensus 531 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 602 (712)
+++++|++.+++..+.+ +...+..+...|.. .+++++|+..|++..+. .+...+..++.+|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCc
Confidence 66777777777777643 44555566666665 77888888888777632 245667778888887 88
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccCCCC
Q 005136 603 RLSEAEDFINSMPFEPDSNAWASLLSGCKT----YKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 603 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~ 653 (712)
++++|...+++.....+...+..+...|.. .++.++|...++++.+..|++
T Consensus 201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 888888888876222336666777777777 888888888888888887763
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=140.43 Aligned_cols=263 Identities=11% Similarity=0.021 Sum_probs=177.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCchHHHHHHHHHHHHc----C-CCCchhhHH
Q 005136 420 SAIISGYLEHKQFDLVFAVFNEMLLSGEIPNK----STFSSVLCASASVASLEKGKDLHGKIIKL----G-FPYDVFLGT 490 (712)
Q Consensus 420 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~ 490 (712)
..+...+...|++++|...|++..+.+ +.+. ..+..+...+...|++++|...+.+..+. + .+.....+.
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 334455555566666666666666542 1122 34555555666666666666666665532 1 112334556
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCC---------CcchHHHHHHHHHHcCC-----------------hHHHHHHHHHHH
Q 005136 491 ALTDTYAKSGDIESSRRVFDRMPDK---------NEISWTVMVRGLAESGY-----------------AKESINLFEEME 544 (712)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~~ 544 (712)
.+...|...|++++|...+++..+. ...++..+...+...|+ +++|++.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 6666777777777777776665421 12356677777888888 888888887765
Q ss_pred Hc----CCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc----hHHHHHHHHHhhhcCChHHHHHHHHhC-
Q 005136 545 KT----SITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN----GRHYTCVVDMLSRSGRLSEAEDFINSM- 614 (712)
Q Consensus 545 ~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~- 614 (712)
+. +..| ....+..+...+...|++++|+..+++..+...-.++ ...+..++.+|...|++++|...+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 42 1112 1246777888888999999999999887632111111 237788899999999999999998876
Q ss_pred CC---CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCCchhHHHHHHHHH
Q 005136 615 PF---EPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH------PAGYVLLSNIYASAGRWIDAMNVRKLMT 681 (712)
Q Consensus 615 ~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 681 (712)
.. ..+ ...+..+...+...|++++|...++++++..++. ..++..++.+|.+.|++++|.+++++.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 11 112 4566777888999999999999999998875543 3488999999999999999999999987
Q ss_pred hC
Q 005136 682 EK 683 (712)
Q Consensus 682 ~~ 683 (712)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-13 Score=128.18 Aligned_cols=220 Identities=12% Similarity=-0.004 Sum_probs=179.4
Q ss_pred HhccCchHHHHHHHHHHHHcCC---CCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChH
Q 005136 461 SASVASLEKGKDLHGKIIKLGF---PYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAK 534 (712)
Q Consensus 461 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 534 (712)
....|++++|...+.++.+... +.+...+..+...+...|++++|...|+++. ..+...|..+...+...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 3456889999999999988632 2246778889999999999999999999876 346778999999999999999
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHh
Q 005136 535 ESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINS 613 (712)
Q Consensus 535 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 613 (712)
+|++.++++.+. .| +...+..+...+...|++++|...|+++.+. .|+..........+...|++++|...+++
T Consensus 95 ~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 95 AAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999984 44 5678889999999999999999999999843 56544444455556778999999999976
Q ss_pred C-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 614 M-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE----HPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 614 ~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
. ...|+......++..+...++.++|...++++++..|. ++.++..++.+|.+.|++++|+..++++++.++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 170 HFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 6 22233222334666788889999999999999988764 368999999999999999999999999998664
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=5e-13 Score=136.40 Aligned_cols=289 Identities=9% Similarity=0.046 Sum_probs=135.8
Q ss_pred eHHHHHHHHhccCChhhHHHHhhcCCC--CC-----cccHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHH
Q 005136 387 SWNSMIGGYGLNGQMEEAKELFDNMPK--RN-----DVSWSAIISGYLEHKQFDLVFAVFNEMLLS----GEIPN-KSTF 454 (712)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~p~-~~~~ 454 (712)
.+......+...|++++|+..+++..+ |+ ..++..+...+...|++++|...+++.... +..|. ...+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 344555556666666666666655442 21 134555566666666666666666654332 11111 2344
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHc----CCC-CchhhHHHHHHHHHhcCC--------------------hHHHHHHh
Q 005136 455 SSVLCASASVASLEKGKDLHGKIIKL----GFP-YDVFLGTALTDTYAKSGD--------------------IESSRRVF 509 (712)
Q Consensus 455 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~ 509 (712)
..+...+...|++++|...+.+..+. +.. ....++..+...|...|+ +++|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 44555555666666666665555432 100 012244455555555555 55555554
Q ss_pred ccCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhcccCcHHHHHHHH
Q 005136 510 DRMPD-----KN----EISWTVMVRGLAESGYAKESINLFEEMEKTSI-TPN----ELTILSVLFACSHSGLVDKGLKYF 575 (712)
Q Consensus 510 ~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~ 575 (712)
++..+ .+ ..++..+...+...|++++|+..+++..+... .++ ...+..+...+...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44321 11 12344455555555555555555555443200 011 113444555555555555555555
Q ss_pred HhcchhcCCCC----chHHHHHHHHHhhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHhhcCCHHHHHHHH
Q 005136 576 NSMEPIYNIKP----NGRHYTCVVDMLSRSGRLSEAEDFINSM----PFEPD----SNAWASLLSGCKTYKNEQIAERAV 643 (712)
Q Consensus 576 ~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~ 643 (712)
++......-.+ ...++..++.+|...|++++|...+++. +..++ ...+..+...+...|++++|...+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55432110000 1334445555555555555555555543 00111 233444444455555555555555
Q ss_pred HHHhccCCCCC------chHHHHHHHHHhcCCchhHHH
Q 005136 644 KNLWKLAEEHP------AGYVLLSNIYASAGRWIDAMN 675 (712)
Q Consensus 644 ~~~~~~~p~~~------~~~~~l~~~~~~~g~~~eA~~ 675 (712)
++++++.+... .++..++.++...|+...+..
T Consensus 331 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 368 (406)
T 3sf4_A 331 EKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 368 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHH
Confidence 55555555542 244445555555555444333
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.5e-12 Score=116.62 Aligned_cols=199 Identities=11% Similarity=0.031 Sum_probs=137.5
Q ss_pred HHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHc-CCh
Q 005136 458 LCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAES-GYA 533 (712)
Q Consensus 458 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~~~ 533 (712)
...+...|++++|...+..+.+.. +.+...+..+..++...|++++|...++++. ..+...+..+...+... |++
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 93 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP 93 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcH
Confidence 333334444444444444433321 2233344445555555555555555555443 23445667777788888 888
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHH
Q 005136 534 KESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFI 611 (712)
Q Consensus 534 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 611 (712)
++|+..++++.+.+..|+ ...+..+..++...|++++|+..++++.+. .| +...+..++.++.+.|++++|...+
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (225)
T 2vq2_A 94 AESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYF 170 (225)
T ss_dssp HHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888887433444 466778888888999999999999988743 45 5788889999999999999999999
Q ss_pred HhC-CCC--CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 005136 612 NSM-PFE--PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLL 660 (712)
Q Consensus 612 ~~~-~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 660 (712)
+++ ... .+...+..+...+...|+.+.+..+++.+.+..|+++.+...+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 171 KKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 887 333 3566666666668899999999999999999999988766544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.7e-13 Score=136.58 Aligned_cols=199 Identities=10% Similarity=0.015 Sum_probs=152.6
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHhccCc--------------------hHHH
Q 005136 416 DVSWSAIISGYLEHKQFDLVFAVFNEMLLSG----EIP-NKSTFSSVLCASASVAS--------------------LEKG 470 (712)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g----~~p-~~~~~~~ll~~~~~~~~--------------------~~~a 470 (712)
..++..+...|...|++++|...+++..... ..+ ...++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 3467788889999999999999999876531 111 13477778888999999 9999
Q ss_pred HHHHHHHHHc----CCC-CchhhHHHHHHHHHhcCChHHHHHHhccCCC-----CC----cchHHHHHHHHHHcCChHHH
Q 005136 471 KDLHGKIIKL----GFP-YDVFLGTALTDTYAKSGDIESSRRVFDRMPD-----KN----EISWTVMVRGLAESGYAKES 536 (712)
Q Consensus 471 ~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A 536 (712)
...+.+..+. +.. ....++..+..+|...|++++|...+++..+ ++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9999887653 211 1245677888999999999999999988762 22 22688889999999999999
Q ss_pred HHHHHHHHHcCC-CCC----HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCC---CC-chHHHHHHHHHhhhcCChHHH
Q 005136 537 INLFEEMEKTSI-TPN----ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNI---KP-NGRHYTCVVDMLSRSGRLSEA 607 (712)
Q Consensus 537 ~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~p-~~~~~~~l~~~~~~~g~~~~A 607 (712)
+..+++..+... .++ ..++..+...+...|++++|...+++......- .+ ...++..++.+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999876311 111 356778888999999999999999988643211 12 256788899999999999999
Q ss_pred HHHHHhC
Q 005136 608 EDFINSM 614 (712)
Q Consensus 608 ~~~~~~~ 614 (712)
...+++.
T Consensus 327 ~~~~~~a 333 (406)
T 3sf4_A 327 MHFAEKH 333 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=130.10 Aligned_cols=265 Identities=14% Similarity=0.065 Sum_probs=191.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCchHHHHHHHHHHHHc----CCC-CchhhH
Q 005136 419 WSAIISGYLEHKQFDLVFAVFNEMLLSGEIPN----KSTFSSVLCASASVASLEKGKDLHGKIIKL----GFP-YDVFLG 489 (712)
Q Consensus 419 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 489 (712)
+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+.+..+. +.. .....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444566677777777788888777653 222 245666777777788888888877776532 212 124566
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC-----CC----cchHHHHHHHHHHcCC--------------------hHHHHHHH
Q 005136 490 TALTDTYAKSGDIESSRRVFDRMPD-----KN----EISWTVMVRGLAESGY--------------------AKESINLF 540 (712)
Q Consensus 490 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~ 540 (712)
..+...|...|++++|...+++..+ .+ ..++..+...+...|+ +++|++.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 6777788888888888888776542 12 2267777888888888 88888888
Q ss_pred HHHHHc----CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC----chHHHHHHHHHhhhcCChHHHHHHH
Q 005136 541 EEMEKT----SITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP----NGRHYTCVVDMLSRSGRLSEAEDFI 611 (712)
Q Consensus 541 ~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~ 611 (712)
++..+. +..|. ...+..+...+...|++++|...+++..+...-.+ ....+..++.++...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 876542 11121 24577788888999999999999988763211111 2347888999999999999999999
Q ss_pred HhC-C---CCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCCchhHHHHH
Q 005136 612 NSM-P---FEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH------PAGYVLLSNIYASAGRWIDAMNVR 677 (712)
Q Consensus 612 ~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~eA~~~~ 677 (712)
++. . ..++ ...+..+...+...|++++|...++++++..|.. ..++..++.+|.+.|++++|..++
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 876 1 1222 4556777788999999999999999998876543 348889999999999999999999
Q ss_pred HHHHhCC
Q 005136 678 KLMTEKG 684 (712)
Q Consensus 678 ~~~~~~~ 684 (712)
++.++..
T Consensus 327 ~~a~~~~ 333 (338)
T 3ro2_A 327 EKHLEIS 333 (338)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 9998743
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=140.25 Aligned_cols=161 Identities=17% Similarity=0.209 Sum_probs=144.7
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHH
Q 005136 517 EISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCV 594 (712)
Q Consensus 517 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 594 (712)
...++.|...+.+.|++++|++.|++.++ +.|+ ...+..+..+|.+.|++++|++.|+++.+ +.| +...+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 45688889999999999999999999998 5665 57788999999999999999999999883 477 68899999
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchh
Q 005136 595 VDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWID 672 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 672 (712)
+.+|.+.|++++|++.|++. ...|+ ...+..+...+...|++++|++.++++++++|+++.++..|+.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999987 45565 77889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 005136 673 AMNVRKLMTE 682 (712)
Q Consensus 673 A~~~~~~~~~ 682 (712)
|.+.++++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-09 Score=115.29 Aligned_cols=227 Identities=11% Similarity=-0.019 Sum_probs=135.2
Q ss_pred CcccHHHHHHHHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHH
Q 005136 415 NDVSWSAIISGYLEHKQFDLVF-AVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALT 493 (712)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 493 (712)
....|...+..+...|+.++|. .+|++.... ++.+...+...+....+.|++++|..+++.+.+... ..+..+-
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~----~~~~~~~ 416 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH----LDLAALM 416 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----HHhhhhh
Confidence 4445556666666666666665 777776653 334444455555556666677777776666654210 0000000
Q ss_pred HHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhcc-cCcHHHH
Q 005136 494 DTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKT-SITPNELTILSVLFACSH-SGLVDKG 571 (712)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~-~g~~~~a 571 (712)
. .....++. ..........+|...+....+.|+.+.|..+|.++++. + .+....|...+..-.+ .++.+.|
T Consensus 417 ~---~~p~~~~~---~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~A 489 (679)
T 4e6h_A 417 E---DDPTNESA---INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTA 489 (679)
T ss_dssp H---HSTTCHHH---HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHH
T ss_pred h---ccCcchhh---hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHH
Confidence 0 00000000 00000011235777777777888889999999988874 2 1122333322222223 3558999
Q ss_pred HHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 005136 572 LKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP----DSNAWASLLSGCKTYKNEQIAERAVKNL 646 (712)
Q Consensus 572 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 646 (712)
.++|+...+.+ ..+...+...++.....|+.+.|..+|++. ...| ....|...+..-...|+.+.+..+.+++
T Consensus 490 r~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 490 CKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999888542 225566677888888889999999999986 3333 2455677777777889999999999999
Q ss_pred hccCCCCCc
Q 005136 647 WKLAEEHPA 655 (712)
Q Consensus 647 ~~~~p~~~~ 655 (712)
.+..|+++.
T Consensus 568 ~~~~P~~~~ 576 (679)
T 4e6h_A 568 FEKFPEVNK 576 (679)
T ss_dssp HHHSTTCCH
T ss_pred HHhCCCCcH
Confidence 999998753
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.36 E-value=4e-12 Score=129.90 Aligned_cols=269 Identities=9% Similarity=0.037 Sum_probs=158.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhcCCCCce----eeHHHHHHHHhccCChhhHHHHhhcCCC---------CCcccHHHH
Q 005136 356 ALIDLYSKCGETKDGRLVFDSIVEKDVAHV----VSWNSMIGGYGLNGQMEEAKELFDNMPK---------RNDVSWSAI 422 (712)
Q Consensus 356 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~l 422 (712)
.+...+...|++++|...|+++.+..+.+. .++..+...+...|++++|+..+++..+ ....++..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 344455555666666666655555443222 2344444555555555555444433221 012345556
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCc----------hHHHHHHHHHHHHcCCCCchh
Q 005136 423 ISGYLEHKQFDLVFAVFNEMLLS----GEIP-NKSTFSSVLCASASVAS----------LEKGKDLHGKIIKLGFPYDVF 487 (712)
Q Consensus 423 ~~~~~~~~~~~~a~~~~~~~~~~----g~~p-~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~ 487 (712)
...|...|++++|...+++.... +-.| ...++..+...+...|+ ++.+...
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~-------------- 198 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA-------------- 198 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH--------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH--------------
Confidence 66666666666666666655432 1011 12233334444444444 0111000
Q ss_pred hHHHHHHHHHhcCChHHHHHHhccCCC-----C----CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HH
Q 005136 488 LGTALTDTYAKSGDIESSRRVFDRMPD-----K----NEISWTVMVRGLAESGYAKESINLFEEMEKTSI-TPN----EL 553 (712)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~ 553 (712)
+++|...+++..+ . ....+..+...+...|++++|+..+++..+... .++ ..
T Consensus 199 --------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (411)
T 4a1s_A 199 --------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERR 264 (411)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4444444433321 0 123566677788888888888888887765211 011 13
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC----chHHHHHHHHHhhhcCChHHHHHHHHhC-CC---CCC----HH
Q 005136 554 TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP----NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF---EPD----SN 621 (712)
Q Consensus 554 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~ 621 (712)
.+..+...+...|++++|...+++......-.. ....+..++.+|...|++++|...+++. .. .++ ..
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 677788888999999999999988763211111 2567788999999999999999999876 11 122 44
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 622 AWASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 622 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
.+..+...|...|++++|...+++++++.+.
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 6677788899999999999999999988765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.36 E-value=9.6e-12 Score=110.79 Aligned_cols=165 Identities=10% Similarity=0.080 Sum_probs=137.4
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 005136 485 DVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLF 560 (712)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 560 (712)
+..+|..+...|...|++++|...|++.. +.+...|..+...+...|++++|+..+.+.... .| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 45677778888888888888888888765 345667888888999999999999999998884 44 4566777778
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHH
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQ 637 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 637 (712)
.+...++++.|...+.+.... .| +...+..++.+|.+.|++++|++.+++. ...| +...+..+..++...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 888999999999999988733 55 6788899999999999999999999987 4444 4778888999999999999
Q ss_pred HHHHHHHHHhccCCCCC
Q 005136 638 IAERAVKNLWKLAEEHP 654 (712)
Q Consensus 638 ~a~~~~~~~~~~~p~~~ 654 (712)
+|+..++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999999864
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.8e-09 Score=113.09 Aligned_cols=210 Identities=9% Similarity=-0.038 Sum_probs=117.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHH-HHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC-------------C-
Q 005136 350 DVFISNALIDLYSKCGETKDGR-LVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK-------------R- 414 (712)
Q Consensus 350 ~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~- 414 (712)
...+|...+..+...|+.++|. .+|++.....|.+...|...+......|++++|.++|+.+.+ |
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 3444444444444445544443 555544443333333344444444444445444444443321 1
Q ss_pred -----------CcccHHHHHHHHHhcCChhHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC
Q 005136 415 -----------NDVSWSAIISGYLEHKQFDLVFAVFNEMLLS-G-EIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLG 481 (712)
Q Consensus 415 -----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 481 (712)
...+|...+....+.|+.+.|..+|.+..+. + ..+......+.+.- ...++.+.|..+|+...+.
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~-~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY-HISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH-TTTSCCHHHHHHHHHHHHH-
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-
Confidence 1224666666666677777778888877765 2 12222222222221 1234577888888777765
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCc------chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 005136 482 FPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNE------ISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTI 555 (712)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 555 (712)
++.+...+...++.....|+.+.|..+|++...... ..|...+..-...|+.+.+.++.+++.+. .|+....
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~ 577 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKL 577 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHH
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHH
Confidence 344555666667766777788888888877664322 35677777777778888888888877773 4555444
Q ss_pred HHHHHHhc
Q 005136 556 LSVLFACS 563 (712)
Q Consensus 556 ~~l~~~~~ 563 (712)
..++.-|.
T Consensus 578 ~~f~~ry~ 585 (679)
T 4e6h_A 578 EEFTNKYK 585 (679)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 44444443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=9.2e-12 Score=123.17 Aligned_cols=134 Identities=10% Similarity=0.014 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC----chH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSI-TPN----ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP----NGR 589 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~ 589 (712)
.+..+...+...|++++|...+++..+... .++ ...+..+...+...|++++|...+++......-.+ ...
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 466667777788888888888877665210 111 23567777788888999999888887753211111 155
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 590 HYTCVVDMLSRSGRLSEAEDFINSM-P---FEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
++..++.+|...|++++|...+++. . ..++ ...+..+...+...|++++|...+++++++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 7778889999999999999998876 1 1112 445677778899999999999999999988765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=9.4e-12 Score=111.01 Aligned_cols=162 Identities=15% Similarity=0.051 Sum_probs=116.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHh
Q 005136 520 WTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDML 598 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 598 (712)
+..+...+...|++++|+..++++.+. .+.+...+..+...+...|++++|...++++.+. .| +...+..++..+
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHH
Confidence 344455555556666666666555442 1223445556666666666777777666666532 33 566777777788
Q ss_pred hhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHH
Q 005136 599 SRSGRLSEAEDFINSM-PF-EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNV 676 (712)
Q Consensus 599 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 676 (712)
...|++++|.+.++++ .. +.+...+..+...+...|++++|...++++++..|+++.++..++.++...|++++|..+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888776 22 345667777788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC
Q 005136 677 RKLMTEKGL 685 (712)
Q Consensus 677 ~~~~~~~~~ 685 (712)
++++++..+
T Consensus 167 ~~~~~~~~~ 175 (186)
T 3as5_A 167 FKKANELDE 175 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHcCC
Confidence 999887543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-11 Score=113.76 Aligned_cols=168 Identities=9% Similarity=-0.016 Sum_probs=113.2
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHH
Q 005136 516 NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCV 594 (712)
Q Consensus 516 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 594 (712)
++..+......+...|++++|++.|++.++....++...+..+..++...|++++|+..|++.. ...| +...+..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI---KKNYNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HTTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH---HhCcchHHHHHHH
Confidence 3445556666667777777777777777664322455555556666777777777777777766 2345 45666677
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCCC-H-------HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC--CCchHHHHHHH
Q 005136 595 VDMLSRSGRLSEAEDFINSM-PFEPD-S-------NAWASLLSGCKTYKNEQIAERAVKNLWKLAEE--HPAGYVLLSNI 663 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 663 (712)
+.+|...|++++|...+++. ...|+ . ..+..+...+...|++++|+..++++++.+|+ ++.++..++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 77777777777777777665 22333 3 34555556666777777777777777777777 77777777777
Q ss_pred HHhcCCc---------------------------hhHHHHHHHHHhCCCc
Q 005136 664 YASAGRW---------------------------IDAMNVRKLMTEKGLR 686 (712)
Q Consensus 664 ~~~~g~~---------------------------~eA~~~~~~~~~~~~~ 686 (712)
|...|+. ++|+.++++.++..+.
T Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 163 FYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 7777766 9999999999886543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-11 Score=124.08 Aligned_cols=223 Identities=9% Similarity=0.025 Sum_probs=150.0
Q ss_pred HHhccCchHHHHHHHHHHHHc--CCCC---chhhHHHHHHHHHhcCChHHHHHHhccCCC-----CC-----cchHHHHH
Q 005136 460 ASASVASLEKGKDLHGKIIKL--GFPY---DVFLGTALTDTYAKSGDIESSRRVFDRMPD-----KN-----EISWTVMV 524 (712)
Q Consensus 460 ~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l~ 524 (712)
.+...|++++|...+.+..+. ..+. ...++..+..+|...|+++.|...+++..+ ++ ..+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 344555555555555555432 1111 224455556666666666666666555431 11 23567777
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHhcccCcHHHHHHHHHhcchh---cCCCC-chHHHHHHH
Q 005136 525 RGLAESGYAKESINLFEEMEKTSI-TPNE----LTILSVLFACSHSGLVDKGLKYFNSMEPI---YNIKP-NGRHYTCVV 595 (712)
Q Consensus 525 ~~~~~~~~~~~A~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~ 595 (712)
..|...|++++|++.+++..+... .++. .++..+...|...|++++|+..+++..+. .+..| ...++..++
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 888888888888888888765311 1111 36778888889999999999998887631 12224 466788899
Q ss_pred HHhhhcCChHHHHHHHHhC-C---C--CCC-HHHHHHHHHHHhhcCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 596 DMLSRSGRLSEAEDFINSM-P---F--EPD-SNAWASLLSGCKTYKN---EQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~-~---~--~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
.+|.+.|++++|...+++. . . .|. ...+..+...+...|+ .++|..++++. ...|....++..|+.+|.
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHH
Confidence 9999999999999998876 1 1 222 2224556666888888 78888888776 334455678889999999
Q ss_pred hcCCchhHHHHHHHHHhC
Q 005136 666 SAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 666 ~~g~~~eA~~~~~~~~~~ 683 (712)
..|++++|.+++++.++.
T Consensus 351 ~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999998763
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=127.98 Aligned_cols=238 Identities=10% Similarity=0.106 Sum_probs=142.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc------CC
Q 005136 416 DVSWSAIISGYLEHKQFDLVFAVFNEMLLS-------GEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKL------GF 482 (712)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 482 (712)
..++..+...+...|++++|..+|+++... ..+.....+..+...+...|++++|...+.+..+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 346777888888888888888888887762 12223445556666666677777777666665542 10
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCC-HHHH
Q 005136 483 PYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKT------SITPN-ELTI 555 (712)
Q Consensus 483 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p~-~~~~ 555 (712)
.+ .....+..+...+...|++++|++.++++.+. +..|. ...+
T Consensus 107 ~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 107 HP------------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp CH------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred Ch------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 01 01223445555566666666666666665542 11222 2456
Q ss_pred HHHHHHhcccCcHHHHHHHHHhcchhc-----CCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCC----------CCCC
Q 005136 556 LSVLFACSHSGLVDKGLKYFNSMEPIY-----NIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMP----------FEPD 619 (712)
Q Consensus 556 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~ 619 (712)
..+...+...|++++|+.+++++.... +..| ....+..++.+|...|++++|...++++. ..+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 666777777788888877777765321 1133 35567778888888888888888877651 1111
Q ss_pred -------HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 620 -------SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 620 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
...+......+...+.+.++...++++....|..+.++..++.+|.+.|++++|.+++++.++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112222333445667777788888888888888999999999999999999999999988763
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-10 Score=113.14 Aligned_cols=216 Identities=11% Similarity=0.088 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCch-------HHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 005136 433 DLVFAVFNEMLLSGEIPNKSTFSSVLCASA-------SVASL-------EKGKDLHGKIIKLGFPYDVFLGTALTDTYAK 498 (712)
Q Consensus 433 ~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 498 (712)
++|...|++.+... +-+...+..+...+. ..|++ ++|..++++..+.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555666555531 233344444444332 23443 4555555555542112233444555555555
Q ss_pred cCChHHHHHHhccCCC--C-Ccc-hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-cccCcHHHHHH
Q 005136 499 SGDIESSRRVFDRMPD--K-NEI-SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFAC-SHSGLVDKGLK 573 (712)
Q Consensus 499 ~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~ 573 (712)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++.++.. +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555554432 1 122 45555555555555555555555555421 11222222222111 12355555555
Q ss_pred HHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 005136 574 YFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-P---FEP--DSNAWASLLSGCKTYKNEQIAERAVKNL 646 (712)
Q Consensus 574 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 646 (712)
+|++..+. .| +...+..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..+++++
T Consensus 191 ~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55554422 23 3444455555555555555555555544 1 122 2334444444444455555555555555
Q ss_pred hccCCCC
Q 005136 647 WKLAEEH 653 (712)
Q Consensus 647 ~~~~p~~ 653 (712)
.+..|++
T Consensus 268 ~~~~p~~ 274 (308)
T 2ond_A 268 FTAFREE 274 (308)
T ss_dssp HHHTTTT
T ss_pred HHHcccc
Confidence 5555543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=6.3e-10 Score=108.13 Aligned_cols=213 Identities=8% Similarity=-0.015 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHH-------hcCCh-------HHHHHHhccCCC---C-CcchHHHHHHHHHH
Q 005136 468 EKGKDLHGKIIKLGFPYDVFLGTALTDTYA-------KSGDI-------ESSRRVFDRMPD---K-NEISWTVMVRGLAE 529 (712)
Q Consensus 468 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 529 (712)
++|...++++.+.. +.++..+..++..+. +.|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666676666642 455666666666654 34665 778877776543 2 34467777777888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-H-HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhh-hcCChH
Q 005136 530 SGYAKESINLFEEMEKTSITPNE-L-TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLS-RSGRLS 605 (712)
Q Consensus 530 ~~~~~~A~~~~~~~~~~~~~p~~-~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~-~~g~~~ 605 (712)
.|++++|.++|+++++ +.|+. . .|..++..+.+.|++++|..+|++..+ ..| +...|...+.... ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 8888888888888877 45543 2 677777777778888888888887763 233 4444444333322 257888
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc---CCC-CCchHHHHHHHHHhcCCchhHHHHHHH
Q 005136 606 EAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKL---AEE-HPAGYVLLSNIYASAGRWIDAMNVRKL 679 (712)
Q Consensus 606 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~ 679 (712)
+|..+|++. ...| +...|..++..+...|+.++|..+++++++. .|+ +..++..++..+.+.|+.++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888776 2223 4666777777777788888888888888774 343 556777778888888888888888888
Q ss_pred HHhCCCc
Q 005136 680 MTEKGLR 686 (712)
Q Consensus 680 ~~~~~~~ 686 (712)
+.+..+.
T Consensus 267 a~~~~p~ 273 (308)
T 2ond_A 267 RFTAFRE 273 (308)
T ss_dssp HHHHTTT
T ss_pred HHHHccc
Confidence 7776543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=7.1e-10 Score=111.40 Aligned_cols=154 Identities=9% Similarity=-0.035 Sum_probs=65.9
Q ss_pred HHHHhccCChhhHHHHhhcCCC----CCc----ccHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH----HHHHHHH
Q 005136 392 IGGYGLNGQMEEAKELFDNMPK----RND----VSWSAIISGYLEHKQFDLVFAVFNEMLLSGE-IPNK----STFSSVL 458 (712)
Q Consensus 392 ~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~~----~~~~~ll 458 (712)
...+...|++++|...+++... .+. .+++.+...+...|++++|...+++...... .++. .++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3344455666666555544221 111 1334444555555555555555555443110 0111 1233334
Q ss_pred HHHhccCchHHHHHHHHHHHHc----CCC--C-chhhHHHHHHHHHhcCChHHHHHHhccCCC--C------CcchHHHH
Q 005136 459 CASASVASLEKGKDLHGKIIKL----GFP--Y-DVFLGTALTDTYAKSGDIESSRRVFDRMPD--K------NEISWTVM 523 (712)
Q Consensus 459 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~l 523 (712)
..+...|++++|...+.+..+. +.. | ....+..+...+...|++++|...+++... + ....+..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 4445555555555555554431 111 1 122333344444555555555555444321 0 01123344
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 005136 524 VRGLAESGYAKESINLFEEMEK 545 (712)
Q Consensus 524 ~~~~~~~~~~~~A~~~~~~~~~ 545 (712)
...+...|++++|...+++...
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444455555555555554443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-11 Score=125.56 Aligned_cols=179 Identities=12% Similarity=0.033 Sum_probs=155.3
Q ss_pred hHHHHHHhccCC---CCCcchHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHH
Q 005136 502 IESSRRVFDRMP---DKNEISWTVMVRGLAESGYA-KESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFN 576 (712)
Q Consensus 502 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 576 (712)
++++...++... ..+...+..+...+...|++ ++|++.|++..+. .|+ ...+..+..+|...|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555443 34566788899999999999 9999999999984 564 6789999999999999999999999
Q ss_pred hcchhcCCCCchHHHHHHHHHhhhc---------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc--------CCHH
Q 005136 577 SMEPIYNIKPNGRHYTCVVDMLSRS---------GRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTY--------KNEQ 637 (712)
Q Consensus 577 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------g~~~ 637 (712)
++. .+.|+...+..++.+|... |++++|+..+++. ...| +...|..+..+|... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998 4578888999999999999 9999999999987 4445 477888888888888 9999
Q ss_pred HHHHHHHHHhccCC---CCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 638 IAERAVKNLWKLAE---EHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 638 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
+|+..++++++++| +++.++..++.+|...|++++|++.+++.++..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999 9999999999999999999999999999988653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-10 Score=116.92 Aligned_cols=228 Identities=10% Similarity=0.033 Sum_probs=148.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHc--CCC----CchhhHHHH
Q 005136 424 SGYLEHKQFDLVFAVFNEMLLS----GEIP-NKSTFSSVLCASASVASLEKGKDLHGKIIKL--GFP----YDVFLGTAL 492 (712)
Q Consensus 424 ~~~~~~~~~~~a~~~~~~~~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~l 492 (712)
..+...|++++|...|++.... +-.+ ...++..+...+...|+++.|...+.+..+. ... ....++..+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3344444444445555554432 1111 1234444555555555666555555555432 110 112355566
Q ss_pred HHHHHhcCChHHHHHHhccCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHH
Q 005136 493 TDTYAKSGDIESSRRVFDRMPD-----KN----EISWTVMVRGLAESGYAKESINLFEEMEKT----SITP-NELTILSV 558 (712)
Q Consensus 493 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l 558 (712)
..+|...|++++|...+++..+ ++ ..++..+...|...|++++|++.+++..+. +..| ...++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 6677777777777777766541 11 135777888899999999999999888762 2323 34668888
Q ss_pred HHHhcccCcHHHHHHHHHhcchhcCC--CC-chHHHHHHHHHhhhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHh
Q 005136 559 LFACSHSGLVDKGLKYFNSMEPIYNI--KP-NGRHYTCVVDMLSRSGR---LSEAEDFINSMPFEPD-SNAWASLLSGCK 631 (712)
Q Consensus 559 ~~~~~~~g~~~~a~~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~~ 631 (712)
...+...|++++|...+++......- .| ....+..++..+...|+ .++|..++++....|+ ...+..+...|.
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 88999999999999999887632111 12 23346678889999999 8999999999865444 445667777799
Q ss_pred hcCCHHHHHHHHHHHhccCC
Q 005136 632 TYKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 632 ~~g~~~~a~~~~~~~~~~~p 651 (712)
..|++++|...+++++++..
T Consensus 351 ~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999987643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-10 Score=107.37 Aligned_cols=205 Identities=10% Similarity=0.056 Sum_probs=155.9
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHH
Q 005136 449 PNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVR 525 (712)
Q Consensus 449 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 525 (712)
.++..+......+...|++++|...+.+..+...+++...+..+..++...|++++|...+++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456777888888999999999999999999876546777777788999999999999999988763 34457888889
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc---hHHHHHH
Q 005136 526 GLAESGYAKESINLFEEMEKTSITPNE--------LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN---GRHYTCV 594 (712)
Q Consensus 526 ~~~~~~~~~~A~~~~~~~~~~~~~p~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 594 (712)
.+...|++++|++.+++..+ ..|+. ..|..+...+...|++++|++.|+++. ...|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 99999999999999999988 45543 346677778888999999999999988 34665 5677788
Q ss_pred HHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 595 VDMLSRSGRLSEAEDFINSM-PF-EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
+.+|...|+. .++++ .. ..+...+.... ....+.+++|...++++++++|+++.+...|..+..
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888766543 22332 11 12233333322 345677899999999999999999988888776654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-11 Score=118.10 Aligned_cols=238 Identities=10% Similarity=0.082 Sum_probs=148.9
Q ss_pred ceeeHHHHHHHHhccCChhhHHHHhhcCCC--------C---CcccHHHHHHHHHhcCChhHHHHHHHHHHHC------C
Q 005136 384 HVVSWNSMIGGYGLNGQMEEAKELFDNMPK--------R---NDVSWSAIISGYLEHKQFDLVFAVFNEMLLS------G 446 (712)
Q Consensus 384 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------g 446 (712)
...++..+...+...|++++|+..++++.+ . ...++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 567788999999999999999999988764 2 2446888999999999999999999998764 2
Q ss_pred CCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHc------CCCC-chhhHHHHHHHHHhcCChHHHHHHhccCCCCCcc
Q 005136 447 EIP-NKSTFSSVLCASASVASLEKGKDLHGKIIKL------GFPY-DVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEI 518 (712)
Q Consensus 447 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 518 (712)
..| ....+..+...+...|++++|...+.++.+. +..| ...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~------------------------------- 154 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK------------------------------- 154 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH-------------------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH-------------------------------
Confidence 223 3556777888888999999999988887653 1111 122
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhc------CCC
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKT------SITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIY------NIK 585 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~ 585 (712)
.+..+...+...|++++|++.++++.+. +..|. ..++..+...+...|++++|...++++.+.. ...
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3444455555555555555555555442 11222 2345566666666677777776666665210 111
Q ss_pred C-c------hHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 586 P-N------GRHYTCVVDMLSRSGRLSEAEDFINSMP-FEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 586 p-~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
+ . ...+..+...+...+.+.+|...++... ..|+ ...+..+...|...|++++|...+++++++.|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 1 1122223333445556666666666663 2333 566777888899999999999999999988775
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.3e-10 Score=110.62 Aligned_cols=163 Identities=11% Similarity=0.046 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcC--CCC-chHH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKT----SITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYN--IKP-NGRH 590 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~p-~~~~ 590 (712)
+++.+...|...|++++|++.+++..+. +-.+ ...++..+..+|...|++++|+..+++...... ..| ...+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 4555666677777777777777666542 1111 124566777778888888888888877763110 233 4667
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHhhcCC---HHHHHHHHHHHhccCCCCCchHHHH
Q 005136 591 YTCVVDMLSRSGRLSEAEDFINSM----PF--EPD-SNAWASLLSGCKTYKN---EQIAERAVKNLWKLAEEHPAGYVLL 660 (712)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l 660 (712)
+..++.+|.+.|++++|...+++. .. .|. ...+..+...+...++ .++|...+++. ...|+....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 778888888888888888888875 11 233 2334444445667777 77777777762 2334445678889
Q ss_pred HHHHHhcCCchhHHHHHHHHHh
Q 005136 661 SNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 661 ~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+.+|...|++++|.+++++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.19 E-value=8.2e-10 Score=98.19 Aligned_cols=166 Identities=13% Similarity=0.048 Sum_probs=140.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 005136 487 FLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACS 563 (712)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 563 (712)
..+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4456677788899999999999999874 355678888999999999999999999998852 335677888889999
Q ss_pred ccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHH
Q 005136 564 HSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQIAE 640 (712)
Q Consensus 564 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~ 640 (712)
..|++++|.+.++++... .| +...+..++.++...|++++|...++++ ... .+...+..+...+...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA---NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc---CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998743 44 6788899999999999999999999987 333 35778888888899999999999
Q ss_pred HHHHHHhccCCCCCch
Q 005136 641 RAVKNLWKLAEEHPAG 656 (712)
Q Consensus 641 ~~~~~~~~~~p~~~~~ 656 (712)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999999887643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-10 Score=115.16 Aligned_cols=304 Identities=9% Similarity=0.060 Sum_probs=214.0
Q ss_pred CCCcHHHHHHHHHHH--HhcCChHHHHHHHHhhhcCCC-----CceeeHHHHHHH--HhccCChhhHH---------HHh
Q 005136 347 IEKDVFISNALIDLY--SKCGETKDGRLVFDSIVEKDV-----AHVVSWNSMIGG--YGLNGQMEEAK---------ELF 408 (712)
Q Consensus 347 ~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~--~~~~~~~~~a~---------~~~ 408 (712)
..|+..+-+.|-..| ...+++++|..+++++..... .+...|-.++.. ....+...... +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 345666666676676 889999999999998765321 122233333322 11112222222 444
Q ss_pred hcCC---CCCc-----ccHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCchHHHHHHHH
Q 005136 409 DNMP---KRND-----VSWSAIISGYLEHKQFDLVFAVFNEMLLSGE-IPN----KSTFSSVLCASASVASLEKGKDLHG 475 (712)
Q Consensus 409 ~~~~---~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~ 475 (712)
+.+. .+.. ..+...+..+...|++++|...|++...... .++ ..++..+...+...|+++.|...+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 4432 2211 1244456677899999999999999876421 122 3567778889999999999999999
Q ss_pred HHHHc--CCC----CchhhHHHHHHHHHhcCChHHHHHHhccCCC-----CC----cchHHHHHHHHHHcCChHHHHHHH
Q 005136 476 KIIKL--GFP----YDVFLGTALTDTYAKSGDIESSRRVFDRMPD-----KN----EISWTVMVRGLAESGYAKESINLF 540 (712)
Q Consensus 476 ~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~ 540 (712)
+..+. ... ....++..+..+|...|++++|.+.+++..+ ++ ..++..+...|...|++++|++.+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 98763 111 1245677889999999999999999987652 22 236778899999999999999999
Q ss_pred HHHHHc----CCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCC--CC-chHHHHHHHHHhhhcCC---hHHHHHH
Q 005136 541 EEMEKT----SITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNI--KP-NGRHYTCVVDMLSRSGR---LSEAEDF 610 (712)
Q Consensus 541 ~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~---~~~A~~~ 610 (712)
++..+. +.+....++..+...+.+.|++++|...+++......- .| ....+..+...+...++ ..+|+..
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 998871 22223567888899999999999999999988743222 12 24456777788888888 8999999
Q ss_pred HHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 005136 611 INSMPFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLA 650 (712)
Q Consensus 611 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 650 (712)
+++....|+ ...+..+...|...|++++|...++++++..
T Consensus 326 ~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 326 FEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999765444 3455667777999999999999999987643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-09 Score=99.52 Aligned_cols=138 Identities=9% Similarity=0.006 Sum_probs=58.9
Q ss_pred HHHhccCChhhHHHHhhcCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHH
Q 005136 393 GGYGLNGQMEEAKELFDNMPKRNDV-SWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGK 471 (712)
Q Consensus 393 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 471 (712)
+-..-.|.+..++.-...+...+.. ...-+.++|...|+++.. ..-.|....+..+...+ ..+ +.
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CC
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HH
Confidence 3444567777776655544332222 222234556655655431 01223332333332222 111 33
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCC-----CcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005136 472 DLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDK-----NEISWTVMVRGLAESGYAKESINLFEEMEK 545 (712)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 545 (712)
..+++..+.+ .++......+..++...|++++|.+++.+.... +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444333322 222333334444555555555555555544221 222334444455555555555555555544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.16 E-value=6.3e-10 Score=102.42 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=56.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCCchhHHHHHHHHHhCCCccC
Q 005136 625 SLLSGCKTYKNEQIAERAVKNLWKLAEEHP---AGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKS 688 (712)
Q Consensus 625 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~ 688 (712)
.+...+...|++++|+..++++++..|+++ .++..++.++.+.|++++|++.++++...++...
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 345568899999999999999999999986 6799999999999999999999999988765444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=6.5e-11 Score=114.01 Aligned_cols=187 Identities=9% Similarity=0.057 Sum_probs=115.6
Q ss_pred HHhcCChHHHHHHhccCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHH
Q 005136 496 YAKSGDIESSRRVFDRMPD-----KN----EISWTVMVRGLAESGYAKESINLFEEMEKTSI---TPN--ELTILSVLFA 561 (712)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~--~~~~~~l~~~ 561 (712)
|...|++++|...|.+... .+ ..+|+.+..+|...|++++|+..+++.++... .+. ..++..+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445555555555544321 01 23566677777777777777777777665210 111 2456777778
Q ss_pred hccc-CcHHHHHHHHHhcchhcCCCCc----hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---H-----HHHHHHH
Q 005136 562 CSHS-GLVDKGLKYFNSMEPIYNIKPN----GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD---S-----NAWASLL 627 (712)
Q Consensus 562 ~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~~~l~ 627 (712)
|... |++++|+..|++..+...-..+ ..++..++.+|.+.|++++|+..+++. ...|+ . ..+..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 8885 8888888888887632110111 346778888888899999999888876 22222 1 2456666
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCCch-----HHHHHHHHH--hcCCchhHHHHHHHHHh
Q 005136 628 SGCKTYKNEQIAERAVKNLWKLAEEHPAG-----YVLLSNIYA--SAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 628 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~eA~~~~~~~~~ 682 (712)
.++...|++++|...++++++++|+.+.. +..++..+. ..+++++|+..++++.+
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 77888899999999999999888886543 344555554 45678888887765544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-11 Score=103.52 Aligned_cols=136 Identities=10% Similarity=0.036 Sum_probs=68.4
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHH
Q 005136 529 ESGYAKESINLFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSE 606 (712)
Q Consensus 529 ~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 606 (712)
..|++++|++.+++... ..|+. ..+..+...|...|++++|++.|+++.+ +.| +...+..++.+|.+.|++++
T Consensus 9 ~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 9 SKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchHH
Confidence 34445555555544433 22221 2333444555555555555555555542 244 45555555555555555555
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHH-HHHHHhccCCCCCchHHHHHHHHHhcCC
Q 005136 607 AEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAER-AVKNLWKLAEEHPAGYVLLSNIYASAGR 669 (712)
Q Consensus 607 A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 669 (712)
|+..|++. ...|+ ...+..+...+...|++++|.+ +++++++++|+++.++...+.++...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 55555554 33332 4445555555555555544333 3455666666666655555555555553
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.14 E-value=7e-10 Score=104.98 Aligned_cols=62 Identities=8% Similarity=-0.022 Sum_probs=45.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHHhc----------CCchhHHHHHHHHHhCCC
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAEEH---PAGYVLLSNIYASA----------GRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~eA~~~~~~~~~~~~ 685 (712)
..+...|...|++++|+..++++++..|++ +.++..++.+|... |++++|+..++++++..+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 445566777888888888888888887774 34777788887766 777888888888777543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.9e-10 Score=109.11 Aligned_cols=217 Identities=11% Similarity=0.098 Sum_probs=117.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc------CC-CCchhhHHHHHHHHHhcCChHHHHHH
Q 005136 436 FAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKL------GF-PYDVFLGTALTDTYAKSGDIESSRRV 508 (712)
Q Consensus 436 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 508 (712)
++++.+......+....++..+...+...|++++|...+.++.+. +. +....+
T Consensus 28 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-------------------- 87 (283)
T 3edt_B 28 LEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAAT-------------------- 87 (283)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH--------------------
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHH--------------------
Confidence 444444443322233456666777777777777777777766543 11 112233
Q ss_pred hccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchh
Q 005136 509 FDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKT------SITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPI 581 (712)
Q Consensus 509 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 581 (712)
+..+...+...|++++|++.++++.+. .-.| ....+..+...+...|++++|...++++...
T Consensus 88 -----------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 88 -----------LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp -----------HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444455555555555555544432 0112 2345566666677777777777777666522
Q ss_pred c-----CCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCC----------CCCC-HHHHHHHHHHHhh------cCCHHH
Q 005136 582 Y-----NIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMP----------FEPD-SNAWASLLSGCKT------YKNEQI 638 (712)
Q Consensus 582 ~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~------~g~~~~ 638 (712)
. .-.| ...++..++.+|...|++++|...+++.. ..+. ...+..+...+.. ...+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (283)
T 3edt_B 157 YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGE 236 (283)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 0 1133 35566677777777777777777776641 1121 1222222222222 223444
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 639 AERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 639 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
+...++......|..+.++..++.+|...|++++|+.++++.++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 237 YGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444444455666778999999999999999999999988763
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=99.48 Aligned_cols=125 Identities=7% Similarity=-0.063 Sum_probs=106.2
Q ss_pred HHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC
Q 005136 558 VLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYK 634 (712)
Q Consensus 558 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 634 (712)
|...+...|++++|+..++... ...| +...+..++.+|.+.|++++|++.|++. ...| +...|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4556778899999999999887 3456 4566778999999999999999999997 4555 4788888999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHH-HHHHHhCCC
Q 005136 635 NEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNV-RKLMTEKGL 685 (712)
Q Consensus 635 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~-~~~~~~~~~ 685 (712)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++.++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999987775 588887654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.12 E-value=2.9e-09 Score=99.72 Aligned_cols=175 Identities=10% Similarity=0.019 Sum_probs=106.1
Q ss_pred HHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcch
Q 005136 505 SRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEP 580 (712)
Q Consensus 505 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 580 (712)
|...|++.. .++...+..+..++...|++++|++++.+.+..|-.+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 445555443 2334444566667777777777777777766543212 334556666777777777777777777763
Q ss_pred hcCCCC-----chHHHHHHHHH--hhhcC--ChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc-
Q 005136 581 IYNIKP-----NGRHYTCVVDM--LSRSG--RLSEAEDFINSM-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKL- 649 (712)
Q Consensus 581 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 649 (712)
. .| +..+...|+.+ ....| +..+|..+|+++ ...|+..+...++.++.+.|++++|++.++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 55 24444455444 33333 677777777776 33444233333344667777777777777766654
Q ss_pred ---------CCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 650 ---------AEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 650 ---------~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
+|+++.++..++.+....|+ +|.++++++++..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 36677777777766666775 6777777777654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-10 Score=124.07 Aligned_cols=163 Identities=15% Similarity=0.199 Sum_probs=131.6
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 005136 485 DVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLF 560 (712)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 560 (712)
+...++.|..+|.+.|++++|.+.|++.. ..+...|..+..+|.+.|++++|++.|++.++ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45567777777888888888888887765 23456788888888899999999999998888 5565 467888888
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHH
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQ 637 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 637 (712)
++...|++++|++.|++..+ +.| +...+..++.+|.+.|++++|++.|++. ...|+ ...+..+...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 89999999999999988873 367 6788889999999999999999999887 45565 677888888899999999
Q ss_pred HHHHHHHHHhccCCC
Q 005136 638 IAERAVKNLWKLAEE 652 (712)
Q Consensus 638 ~a~~~~~~~~~~~p~ 652 (712)
+|++.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999988876543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.10 E-value=6.9e-08 Score=96.75 Aligned_cols=273 Identities=9% Similarity=-0.010 Sum_probs=144.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHh----hHHHHHHHHhcccchHHHHHHHHHHHHhCCCC-C----ccHHHHH
Q 005136 155 AICGFVQNGFSFEALKLFLKLLESGVKPNEV----TFSSICKACAEINDFRLGLSVFGLIFKAGFEK-H----VSVCNSL 225 (712)
Q Consensus 155 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l 225 (712)
....+...|++++|...+++........+.. .+..+...+...|+++.|...++......... + ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445566788888888888776653222221 34555666777788888888887776532111 1 1234556
Q ss_pred HHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCC----CceeHHHHHHHHHhcCChhHHH
Q 005136 226 ITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPER----NEVSWSVMIARYNQSGYPEEAF 301 (712)
Q Consensus 226 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~ 301 (712)
...+...|++++|...+++. ..+......+ ...++..+...+...|++++|.
T Consensus 100 a~~~~~~G~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKA------------------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 155 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH------------------------HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 66677778888887777632 2233232222 1224455666777788888888
Q ss_pred HHHHHHHhCCCC--C--CHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCc--HHHHH----HHHHHHHhcCChHHHH
Q 005136 302 RLFRQMTRYSFK--P--NTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKD--VFISN----ALIDLYSKCGETKDGR 371 (712)
Q Consensus 302 ~~~~~m~~~~~~--p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~g~~~~A~ 371 (712)
..+++.....-. + ...++..+...+...|++++|...++........++ ..... ..+..+...|++++|.
T Consensus 156 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 235 (373)
T 1hz4_A 156 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 235 (373)
T ss_dssp HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 888776542211 1 223455555556666667776666666654311111 11111 2223355666666666
Q ss_pred HHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC----CC
Q 005136 372 LVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLS----GE 447 (712)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~ 447 (712)
..+++.....+.+... ....+..+...+...|++++|...+++.... |.
T Consensus 236 ~~~~~a~~~~~~~~~~---------------------------~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~ 288 (373)
T 1hz4_A 236 NWLRHTAKPEFANNHF---------------------------LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL 288 (373)
T ss_dssp HHHHHSCCCCCTTCGG---------------------------GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCCCCcchh---------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 6666655433211000 0002334445555555666556666655432 22
Q ss_pred CCCH-HHHHHHHHHHhccCchHHHHHHHHHHH
Q 005136 448 IPNK-STFSSVLCASASVASLEKGKDLHGKII 478 (712)
Q Consensus 448 ~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 478 (712)
.++. ..+..+..++...|+.++|...+....
T Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 289 MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2222 134444455556666666666665554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-10 Score=98.52 Aligned_cols=103 Identities=13% Similarity=0.032 Sum_probs=94.1
Q ss_pred CCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 005136 583 NIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVL 659 (712)
Q Consensus 583 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 659 (712)
.+.| +...+..++..+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 5677 6778899999999999999999999998 4455 47888899999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 660 LSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 660 l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
++.+|.+.|++++|+..+++.++...
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999988653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.3e-09 Score=89.44 Aligned_cols=127 Identities=15% Similarity=0.223 Sum_probs=90.2
Q ss_pred HHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHh
Q 005136 555 ILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF-EPDSNAWASLLSGCK 631 (712)
Q Consensus 555 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~ 631 (712)
+..+...+...|++++|..+++++.+. .| +...+..++..+...|++++|...++++ .. ..+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc---CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 344445555555666666666555422 23 4555666666677777777777777665 22 234556667777788
Q ss_pred hcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 632 TYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 632 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
..|++++|...++++++..|+++.++..++.++...|++++|..+++++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 88888889999988888888888888999999999999999999998887754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=7.8e-09 Score=99.40 Aligned_cols=212 Identities=9% Similarity=-0.009 Sum_probs=129.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 005136 423 ISGYLEHKQFDLVFAVFNEMLLS----GEIPN-KSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYA 497 (712)
Q Consensus 423 ~~~~~~~~~~~~a~~~~~~~~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 497 (712)
+..|...|++++|...|.+.... |-+++ ..+|..+...|...|++++|...+.+..+. +.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~ 108 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FT 108 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HH
Confidence 55666677777777777765442 21111 345556666666666666666666555432 12
Q ss_pred hcCChHHHHHHhccCCCCCcchHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHhcccCcHH
Q 005136 498 KSGDIESSRRVFDRMPDKNEISWTVMVRGLAES-GYAKESINLFEEMEKTSITPN-------ELTILSVLFACSHSGLVD 569 (712)
Q Consensus 498 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~ 569 (712)
..|+...+. .+++.+...|... |++++|+..|++..+. .|+ ..++..+...+...|+++
T Consensus 109 ~~g~~~~~a-----------~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 109 HRGQFRRGA-----------NFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HTTCHHHHH-----------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHH-----------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 223322221 2456677777775 8888888888887762 221 245777788888888888
Q ss_pred HHHHHHHhcchhcCCCCch-----HHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHH------HHHHHHHHHh--hcCC
Q 005136 570 KGLKYFNSMEPIYNIKPNG-----RHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSN------AWASLLSGCK--TYKN 635 (712)
Q Consensus 570 ~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~g~ 635 (712)
+|+..|+++.+...-.+.. ..+..++.++...|++++|...+++. ...|+.. .+..+...+. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 8888888877331111111 15677788888889999999988887 4445421 2334444443 4567
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHH
Q 005136 636 EQIAERAVKNLWKLAEEHPAGYVLLSN 662 (712)
Q Consensus 636 ~~~a~~~~~~~~~~~p~~~~~~~~l~~ 662 (712)
+++|...++++..++|.+..++..+-.
T Consensus 256 ~~~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp HHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 888888888888888775544444433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-09 Score=101.78 Aligned_cols=185 Identities=9% Similarity=0.029 Sum_probs=122.7
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHhccCCC--C-C---cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHH
Q 005136 485 DVFLGTALTDTYAKSGDIESSRRVFDRMPD--K-N---EISWTVMVRGLAESGYAKESINLFEEMEKTSITPN----ELT 554 (712)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~ 554 (712)
+...+..+...+.+.|++++|...|+.+.+ | + ...+..+..++...|++++|+..|+++++. .|+ ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 344445555566666777777766666552 2 2 334566666777777777777777777763 232 234
Q ss_pred HHHHHHHhcc--------cCcHHHHHHHHHhcchhcCCCC-chHHH-----------------HHHHHHhhhcCChHHHH
Q 005136 555 ILSVLFACSH--------SGLVDKGLKYFNSMEPIYNIKP-NGRHY-----------------TCVVDMLSRSGRLSEAE 608 (712)
Q Consensus 555 ~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~p-~~~~~-----------------~~l~~~~~~~g~~~~A~ 608 (712)
+..+..++.. .|++++|+..|+++.+. .| +.... ..++.+|.+.|++++|+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 5555666666 77777777777777643 33 22222 56788999999999999
Q ss_pred HHHHhC-CCCCC----HHHHHHHHHHHhhc----------CCHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHhcCCc
Q 005136 609 DFINSM-PFEPD----SNAWASLLSGCKTY----------KNEQIAERAVKNLWKLAEEHPA---GYVLLSNIYASAGRW 670 (712)
Q Consensus 609 ~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~ 670 (712)
..++++ ...|+ ...+..+..+|... |++++|...++++++..|+++. +...+..++.+.|++
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence 999987 33333 45666677777655 8999999999999999999864 444555555555555
Q ss_pred hhHH
Q 005136 671 IDAM 674 (712)
Q Consensus 671 ~eA~ 674 (712)
+++.
T Consensus 249 ~~~~ 252 (261)
T 3qky_A 249 EGDA 252 (261)
T ss_dssp HTCT
T ss_pred hhhh
Confidence 4443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=4.6e-09 Score=100.56 Aligned_cols=175 Identities=10% Similarity=-0.008 Sum_probs=142.1
Q ss_pred HHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchh
Q 005136 503 ESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPI 581 (712)
Q Consensus 503 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 581 (712)
+.....+......+...+..+...+...|++++|+..|+++.+ ..| +...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3444455554445556677788889999999999999999998 456 4567888899999999999999999999843
Q ss_pred cCCCCchHHHH-HHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC--Cch
Q 005136 582 YNIKPNGRHYT-CVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH--PAG 656 (712)
Q Consensus 582 ~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 656 (712)
.|+..... .....+.+.++.++|...+++. ...| +...+..+...+...|++++|...++++++.+|++ +.+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 56544333 3344467888889999988887 4445 47788888888999999999999999999999998 889
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 657 YVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 657 ~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+..|+.++...|+.++|...+++.+.
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999988764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.7e-09 Score=93.91 Aligned_cols=163 Identities=7% Similarity=-0.043 Sum_probs=134.7
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC----cHHHHHHHHHhcchhcCCCCchHH
Q 005136 515 KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSG----LVDKGLKYFNSMEPIYNIKPNGRH 590 (712)
Q Consensus 515 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 590 (712)
.++..+..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|.++|++..+ .-++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~----~g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE----AGSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH----TTCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH----CCCHHH
Confidence 456667778888888899999999999988854 55677777777877 6 89999999999872 236778
Q ss_pred HHHHHHHhhh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHhh----cCCHHHHHHHHHHHhccCCCCCchHH
Q 005136 591 YTCVVDMLSR----SGRLSEAEDFINSM-PFEPD---SNAWASLLSGCKT----YKNEQIAERAVKNLWKLAEEHPAGYV 658 (712)
Q Consensus 591 ~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~ 658 (712)
+..|+.+|.. .+++++|+.++++. ...|. ...+..+...|.. .++.++|..+++++.+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 8889999887 88999999999987 44443 7778888888877 78999999999999988 77788999
Q ss_pred HHHHHHHhc-C-----CchhHHHHHHHHHhCCCc
Q 005136 659 LLSNIYASA-G-----RWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 659 ~l~~~~~~~-g-----~~~eA~~~~~~~~~~~~~ 686 (712)
.|+.+|... | ++++|+.++++..+.|.+
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 999999865 3 899999999999887753
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.4e-10 Score=120.41 Aligned_cols=147 Identities=12% Similarity=0.029 Sum_probs=75.3
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHH
Q 005136 517 EISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCV 594 (712)
Q Consensus 517 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 594 (712)
...+..+...+...|++++|++.++++.+ ..| +...+..+..++...|++++|+..|+++.+ +.| +...+..+
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~l 507 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD---TFPGELAPKLAL 507 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCSHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHH
Confidence 33444555555555555555555555555 233 234455555555555555555555555542 234 44555555
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 005136 595 VDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGR 669 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 669 (712)
+.+|.+.|++++ ++.|++. ...| +...+..+..++...|++++|++.++++++++|+++.++..++.++...|+
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 555555555555 5555554 2233 244455555555555555555555555555555555555555555544443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.7e-09 Score=92.94 Aligned_cols=159 Identities=9% Similarity=0.023 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDM 597 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 597 (712)
.+..+...+...|++++|+..+++..+ ..|+ ...+..+...+...|++++|+..|+++... .|+......++..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHH
Confidence 344566677788888888888887766 3453 466777888888888888898888888743 3433333333322
Q ss_pred -hhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHhcCCchh
Q 005136 598 -LSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH--PAGYVLLSNIYASAGRWID 672 (712)
Q Consensus 598 -~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~e 672 (712)
+...+...+|...+++. ...|+ ...+..+...+...|++++|...++++++.+|+. +.++..++.++...|+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22333344577777776 44554 7788888888999999999999999999999885 5599999999999999999
Q ss_pred HHHHHHHHHh
Q 005136 673 AMNVRKLMTE 682 (712)
Q Consensus 673 A~~~~~~~~~ 682 (712)
|...+++.+.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=4.4e-09 Score=112.02 Aligned_cols=158 Identities=9% Similarity=0.055 Sum_probs=121.0
Q ss_pred cCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHH
Q 005136 499 SGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKY 574 (712)
Q Consensus 499 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 574 (712)
.|++++|...+++..+ .+...|..+...+...|++++|++.+++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998774 3456788889999999999999999999988 4554 57788888999999999999999
Q ss_pred HHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc---CCHHHHHHHHHHHhc
Q 005136 575 FNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTY---KNEQIAERAVKNLWK 648 (712)
Q Consensus 575 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 648 (712)
+++..+. .| +...+..++.+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998843 56 6788999999999999999999999987 3344 467778888888888 999999999999999
Q ss_pred cCCCCCchHHHHH
Q 005136 649 LAEEHPAGYVLLS 661 (712)
Q Consensus 649 ~~p~~~~~~~~l~ 661 (712)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999888888777
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.2e-09 Score=86.98 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=72.8
Q ss_pred CCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 005136 584 IKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLL 660 (712)
Q Consensus 584 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 660 (712)
+.| ....+...+..|.+.|++++|++.|++. ...| +...+..+..++...|++++|+..++++++++|+++.++..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 455 3556667777777777777777777765 3334 466666677777777777777777777777777777777777
Q ss_pred HHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 661 SNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 661 ~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
|.++...|++++|++.+++.++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 7777777777777777777776543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-09 Score=91.70 Aligned_cols=102 Identities=13% Similarity=0.033 Sum_probs=86.4
Q ss_pred CCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 005136 583 NIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVL 659 (712)
Q Consensus 583 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 659 (712)
.+.| +...+..++..+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4456 6677788888899999999999999887 3344 57778888888889999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 660 LSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 660 l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
++.+|...|++++|++.+++.++..
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999888754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.93 E-value=4e-09 Score=95.55 Aligned_cols=158 Identities=8% Similarity=-0.003 Sum_probs=106.1
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCC---CcchHHH----------------HHHHHHHcCChHHHHHHHHHHHHcCCC
Q 005136 489 GTALTDTYAKSGDIESSRRVFDRMPDK---NEISWTV----------------MVRGLAESGYAKESINLFEEMEKTSIT 549 (712)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~~~~~ 549 (712)
.......+...|++++|...|++..+. +...|.. +..++...|++++|+..+++.++ +.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~ 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KA 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HC
Confidence 334455667788888888888877643 2334555 77778888888888888888877 44
Q ss_pred C-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCC--hHHHHHHHHhCCCCCCHH--HH
Q 005136 550 P-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGR--LSEAEDFINSMPFEPDSN--AW 623 (712)
Q Consensus 550 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~~~--~~ 623 (712)
| +...+..+..++...|++++|+..|+++.+ +.| +...+..++.+|...|+ .+.+...+++.. .|++. .+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~ 160 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYAR 160 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHH
Confidence 5 446677777788888888888888888773 366 57777778777765543 344555555553 33332 33
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
.....++...|++++|+..+++++++.|+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 33444466677888888888888888886
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-08 Score=91.21 Aligned_cols=127 Identities=9% Similarity=-0.080 Sum_probs=73.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHh
Q 005136 520 WTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDML 598 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 598 (712)
+..+...+...|++++|++.+++. +.|+...+..+..++...|++++|+..|++.... .| +...+..++.+|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHH
Confidence 334455556666666666666554 2445556666666666666666666666665522 33 455566666666
Q ss_pred hhcCChHHHHHHHHhC-CCCCC-----------------HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 005136 599 SRSGRLSEAEDFINSM-PFEPD-----------------SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 599 ~~~g~~~~A~~~~~~~-~~~p~-----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
...|++++|...+++. ...|+ ...+..+..++...|++++|...++++++..|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 6666666666666554 11111 2445555555666666666666666666666654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-08 Score=98.00 Aligned_cols=222 Identities=12% Similarity=0.043 Sum_probs=118.6
Q ss_pred hcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHc------CC-CCcHHHHHHHH
Q 005136 293 QSGYPEEAFRLFRQMTR-------YSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKI------GI-EKDVFISNALI 358 (712)
Q Consensus 293 ~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 358 (712)
..|++++|+..|++..+ ...+....++..+...+...|++++|...+..+.+. +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 35666666666665543 111223456667777777778888888777777654 21 22345677777
Q ss_pred HHHHhcCChHHHHHHHHhhhcCC--------CCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcC
Q 005136 359 DLYSKCGETKDGRLVFDSIVEKD--------VAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHK 430 (712)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 430 (712)
..|...|++++|...|.+..... +....++..+...+...|++++|
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-------------------------- 146 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEV-------------------------- 146 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHH--------------------------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHH--------------------------
Confidence 88888888888888877765431 12233444444444444444444
Q ss_pred ChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHc-------CCCC-chhhHHHHHHH
Q 005136 431 QFDLVFAVFNEMLLS------GEIP-NKSTFSSVLCASASVASLEKGKDLHGKIIKL-------GFPY-DVFLGTALTDT 495 (712)
Q Consensus 431 ~~~~a~~~~~~~~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~ 495 (712)
...|++.... +..| ...++..+...+...|++++|..++.+..+. ...+ ....+..+...
T Consensus 147 -----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (283)
T 3edt_B 147 -----EYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEER 221 (283)
T ss_dssp -----HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 5555555443 1122 2445666777777778888887777776643 1122 22222222222
Q ss_pred HHhcCC------hHHHHHHhccCCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005136 496 YAKSGD------IESSRRVFDRMPDKN---EISWTVMVRGLAESGYAKESINLFEEMEK 545 (712)
Q Consensus 496 ~~~~g~------~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 545 (712)
+...+. +..+...++.....+ ..++..+...|...|++++|...+++..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 222 EESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222222 233333333333221 22455566666666666666666666554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.9e-09 Score=86.46 Aligned_cols=114 Identities=12% Similarity=0.075 Sum_probs=95.6
Q ss_pred CCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHH
Q 005136 548 ITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAW 623 (712)
Q Consensus 548 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 623 (712)
+.|+. ..+......+.+.|++++|++.|++..+. .| +...+..++.+|.+.|++++|+..+++. ...| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 45543 45667778888899999999999888733 66 7888999999999999999999999987 4444 47788
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
..+..++...|++++|+..++++++++|+++.++..|+.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 88888999999999999999999999999999988888764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-08 Score=97.74 Aligned_cols=135 Identities=12% Similarity=0.005 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 005136 550 PNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLL 627 (712)
Q Consensus 550 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 627 (712)
.+...+..+...+...|++++|...|+++... .| +...+..++.++.+.|++++|...++++ ...|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 34456777888899999999999999999843 67 7888999999999999999999999998 4567765544444
Q ss_pred HH-HhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCcc
Q 005136 628 SG-CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRK 687 (712)
Q Consensus 628 ~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 687 (712)
.. +...++.+.|...++++++.+|+++.++..|+.+|...|++++|+..++++++..+..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 33 6788889999999999999999999999999999999999999999999999876543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-08 Score=92.39 Aligned_cols=159 Identities=14% Similarity=0.062 Sum_probs=110.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHH----------------HHHHhcccCcHHHHHHHHHhcchhcCC
Q 005136 522 VMVRGLAESGYAKESINLFEEMEKTSITPNE-LTILS----------------VLFACSHSGLVDKGLKYFNSMEPIYNI 584 (712)
Q Consensus 522 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~~~ 584 (712)
.....+...|++++|+..|++.++ ..|+. ..+.. +..++...|++++|+..|++..+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 83 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--- 83 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 345567788888888888888887 45644 34555 777888888888888888888733
Q ss_pred CC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcC--CHHHHHHHHHHHhccCCCCCchHHH
Q 005136 585 KP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYK--NEQIAERAVKNLWKLAEEHPAGYVL 659 (712)
Q Consensus 585 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~ 659 (712)
.| +...+..++.+|...|++++|+..|++. ...|+ ...+..+...+...| +.+.+...++++....|. ...++.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHH
Confidence 66 6778888888888888888888888887 44454 666777766665544 344556666665433322 235666
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 660 LSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 660 l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
++.++...|++++|+..+++.++..+.
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 788888888888888888888776543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.88 E-value=5e-08 Score=81.09 Aligned_cols=131 Identities=13% Similarity=0.225 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDM 597 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 597 (712)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... .| +...+..++.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHHH
Confidence 46677888888999999999999888753 335567778888888899999999999988743 34 56778888999
Q ss_pred hhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 005136 598 LSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 598 ~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
+...|++++|...++++ ... .+...+..+...+...|++++|...++++++..|++
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 99999999999999887 223 357777888888999999999999999999888863
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.8e-08 Score=88.46 Aligned_cols=131 Identities=11% Similarity=0.064 Sum_probs=105.9
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH-H
Q 005136 554 TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLLSG-C 630 (712)
Q Consensus 554 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~ 630 (712)
.+..+...+...|++++|+..|+++... .| +...+..++.++.+.|++++|+..+++. ...|++......... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE---LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH---HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHH
Confidence 3455667788999999999999999843 67 6888999999999999999999999998 345544333222222 2
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCcc
Q 005136 631 KTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRK 687 (712)
Q Consensus 631 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 687 (712)
...++...|+..++++++.+|+++.++..++.++...|++++|+..++++++..+..
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 233444568999999999999999999999999999999999999999999876543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-08 Score=97.20 Aligned_cols=218 Identities=7% Similarity=0.058 Sum_probs=144.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHH
Q 005136 429 HKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASAS-VASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRR 507 (712)
Q Consensus 429 ~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 507 (712)
.|++++|.+++++..+... .. +.. .++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4566667777776654311 10 111 45666666666554 344666677777777
Q ss_pred HhccCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHhcccCcHHHHHH
Q 005136 508 VFDRMPD-----KN----EISWTVMVRGLAESGYAKESINLFEEMEKTSI---TPN--ELTILSVLFACSHSGLVDKGLK 573 (712)
Q Consensus 508 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~g~~~~a~~ 573 (712)
.|.+... .+ ..+|+.+...|...|++++|+..+++..+.-. .|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 6665542 11 23577788888889999999999988765311 121 2467778888888 99999999
Q ss_pred HHHhcchhcC---CCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHhhcCCHHHHHH
Q 005136 574 YFNSMEPIYN---IKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF---EPD----SNAWASLLSGCKTYKNEQIAER 641 (712)
Q Consensus 574 ~~~~~~~~~~---~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~ 641 (712)
.|++...... -.+ ...++..++.+|.+.|++++|+..+++. .. .+. ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998763211 111 1467888999999999999999999886 11 222 2245556666778899999999
Q ss_pred HHHHHhccCCCCCch-----HHHHHHHHHhcCCchhHHH
Q 005136 642 AVKNLWKLAEEHPAG-----YVLLSNIYASAGRWIDAMN 675 (712)
Q Consensus 642 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~eA~~ 675 (712)
.+++++ ..|+.... +..++..+ ..|+.+++.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 99876533 44555555 5677666555
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-08 Score=84.92 Aligned_cols=108 Identities=7% Similarity=-0.034 Sum_probs=88.7
Q ss_pred HHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 005136 574 YFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLA 650 (712)
Q Consensus 574 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 650 (712)
.|+++. ...| +...+..++..+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++
T Consensus 6 ~l~~al---~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 6 TLAMLR---GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ---CCT---TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHH---cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444444 4466 5667778888899999999999999887 3344 57778888888999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 651 EEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 651 p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
|+++.++..++.+|...|++++|++.+++.++..
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999988754
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.3e-09 Score=100.02 Aligned_cols=197 Identities=7% Similarity=0.038 Sum_probs=149.7
Q ss_pred ccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 005136 463 SVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEE 542 (712)
Q Consensus 463 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 542 (712)
..|++++|.+++++..+.... . . +...+++++|...|.. ....|...|++++|...+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~--~-------~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S--F-------MKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C--S-------SSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c--c-------cCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 357788999999888764211 1 0 1115788888887665 46778899999999999998
Q ss_pred HHHcCC---CC-C-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCC--CC--chHHHHHHHHHhhhcCChHHHHHHHHh
Q 005136 543 MEKTSI---TP-N-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNI--KP--NGRHYTCVVDMLSRSGRLSEAEDFINS 613 (712)
Q Consensus 543 ~~~~~~---~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 613 (712)
..+... .+ . ..+|..+...|...|++++|+..|++..+...- .| ...++..++.+|.. |++++|+..+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 876311 11 1 246888888999999999999999887633211 12 24578889999988 999999999988
Q ss_pred C-CC---CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC------chHHHHHHHHHhcCCchhHHHHHHH
Q 005136 614 M-PF---EPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP------AGYVLLSNIYASAGRWIDAMNVRKL 679 (712)
Q Consensus 614 ~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~eA~~~~~~ 679 (712)
. .. ..+ ...+..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|+..+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 11 111 45677888889999999999999999999876654 3677888889999999999999999
Q ss_pred HH
Q 005136 680 MT 681 (712)
Q Consensus 680 ~~ 681 (712)
.+
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 88
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.2e-08 Score=104.86 Aligned_cols=166 Identities=8% Similarity=-0.053 Sum_probs=86.7
Q ss_pred HhcCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 005136 427 LEHKQFDLVFAVFNEML--------LSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAK 498 (712)
Q Consensus 427 ~~~~~~~~a~~~~~~~~--------~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 498 (712)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|...++++.+.. +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55666666666666665 22 12233445555555555666666666665555542 3344455555555555
Q ss_pred cCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHH
Q 005136 499 SGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKY 574 (712)
Q Consensus 499 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 574 (712)
.|++++|...|++.. ..+...|..+..++...|++++ ++.|+++.+ +.| +...+..+..++...|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555543 1234445555555555555555 555555555 233 234455555555555555555555
Q ss_pred HHhcchhcCCCC-chHHHHHHHHHhhh
Q 005136 575 FNSMEPIYNIKP-NGRHYTCVVDMLSR 600 (712)
Q Consensus 575 ~~~~~~~~~~~p-~~~~~~~l~~~~~~ 600 (712)
|+++. .+.| +...+..++.++..
T Consensus 557 ~~~al---~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVP---PTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSC---TTSTTHHHHHHHHHHHTC-
T ss_pred HHhhc---ccCcccHHHHHHHHHHHHc
Confidence 55554 2344 34445555555544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2.7e-07 Score=88.73 Aligned_cols=160 Identities=9% Similarity=-0.084 Sum_probs=122.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc----hHHHHH
Q 005136 523 MVRGLAESGYAKESINLFEEMEKTSI-TPNEL----TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN----GRHYTC 593 (712)
Q Consensus 523 l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 593 (712)
.+..+...|++++|.+++++..+... .|+.. .+..+...+...|++++|+..|+++.....-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678889999999999999887421 22211 2334666777888999999999988742121223 336889
Q ss_pred HHHHhhhcCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC------CchHH
Q 005136 594 VVDMLSRSGRLSEAEDFINSMP-----FEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH------PAGYV 658 (712)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 658 (712)
++.+|...|++++|...++++- ...+ ..++..+...|...|++++|...+++++++.+.. +.++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999988762 1112 3467788888999999999999999999875443 56899
Q ss_pred HHHHHHHhcCC-chhHHHHHHHHHh
Q 005136 659 LLSNIYASAGR-WIDAMNVRKLMTE 682 (712)
Q Consensus 659 ~l~~~~~~~g~-~~eA~~~~~~~~~ 682 (712)
.+|.+|.+.|+ +++|++.+++.++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999999998875
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.8e-08 Score=92.92 Aligned_cols=163 Identities=9% Similarity=-0.112 Sum_probs=121.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHhcccCcHHHHHHHHHhcchhcCC--CCc--hHH
Q 005136 520 WTVMVRGLAESGYAKESINLFEEMEKTSITPNE-----LTILSVLFACSHSGLVDKGLKYFNSMEPIYNI--KPN--GRH 590 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~ 590 (712)
+...+..+...|++++|++.+.+..+....... ..+..+...+...|++++|+..+++......- .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566788899999999999888774222111 12334555677888999999999887632111 121 457
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC------CCc
Q 005136 591 YTCVVDMLSRSGRLSEAEDFINSMP----FEPD-----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE------HPA 655 (712)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 655 (712)
++.++.+|...|++++|...+++.. ..|+ ..++..+...|...|++++|...++++++..++ -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 8899999999999999999998761 2222 257788888899999999999999999876432 156
Q ss_pred hHHHHHHHHHhcCCchhH-HHHHHHHHh
Q 005136 656 GYVLLSNIYASAGRWIDA-MNVRKLMTE 682 (712)
Q Consensus 656 ~~~~l~~~~~~~g~~~eA-~~~~~~~~~ 682 (712)
++..+|.+|.+.|++++| ..++++.++
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 889999999999999999 777887654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.78 E-value=9.7e-07 Score=83.74 Aligned_cols=148 Identities=14% Similarity=0.181 Sum_probs=94.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHH--HHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCC----
Q 005136 531 GYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVD--KGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGR---- 603 (712)
Q Consensus 531 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---- 603 (712)
+++++++++++++.+.. +-+...|+.-...+.+.|.++ +++++++++.+. .| |...|+.-..++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchh
Confidence 56677777777776631 224455665555555566665 677777776633 45 56666666666655555
Q ss_pred --hHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC-HHHHHHHHHHHhccC---CCCCchHHHHHHHHHhcCCchhHHH
Q 005136 604 --LSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKN-EQIAERAVKNLWKLA---EEHPAGYVLLSNIYASAGRWIDAMN 675 (712)
Q Consensus 604 --~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~eA~~ 675 (712)
++++++.++++ ...| +...|......+...|+ .+.+..++++++++. |.++.++..|+.+|.+.|+.++|++
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 66777776665 3333 45556666666655555 344556777776665 6777788888888888888888888
Q ss_pred HHHHHHh
Q 005136 676 VRKLMTE 682 (712)
Q Consensus 676 ~~~~~~~ 682 (712)
+++++.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.78 E-value=8.8e-08 Score=87.96 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=53.1
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 592 TCVVDMLSRSGRLSEAEDFINSM-PFEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
..++..|.+.|++++|+..++++ ...|+ ...+..+..++...|+.++|...++++....|++.+
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 35678889999999999999987 33444 356778888899999999999999999998888654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=6.4e-08 Score=103.00 Aligned_cols=151 Identities=13% Similarity=0.008 Sum_probs=94.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHH
Q 005136 530 SGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEA 607 (712)
Q Consensus 530 ~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 607 (712)
.|++++|++.+++..+ ..|+ ...+..+...+...|++++|.+.|++.. ...| +...+..++.+|...|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL---ALHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3567777777777766 3443 4566677777777777777777777776 3355 566777777777777777777
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc---CCchhHHHHHHHHHh
Q 005136 608 EDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASA---GRWIDAMNVRKLMTE 682 (712)
Q Consensus 608 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~eA~~~~~~~~~ 682 (712)
.+.+++. ...| +...+..+...+...|++++|.+.++++++.+|+++.++..++.++... |++++|.+.+++.++
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 7777766 3333 3566667777777777777777777777777777777777777777777 777777777777766
Q ss_pred CCC
Q 005136 683 KGL 685 (712)
Q Consensus 683 ~~~ 685 (712)
.+.
T Consensus 157 ~~p 159 (568)
T 2vsy_A 157 QGV 159 (568)
T ss_dssp HTC
T ss_pred cCC
Confidence 543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-08 Score=88.30 Aligned_cols=124 Identities=10% Similarity=0.080 Sum_probs=59.6
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHH-hhhcCCh-
Q 005136 528 AESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDM-LSRSGRL- 604 (712)
Q Consensus 528 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~- 604 (712)
...|++++|+..+++..+.. +.+...+..+...|...|++++|+..|+++... .| +...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 34455555666665555531 223344555555555555555555555555422 23 34445555555 4455555
Q ss_pred -HHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 605 -SEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 605 -~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
++|...+++. ...|+ ...+..+...+...|++++|...++++++..|+++.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 5555555544 22222 344444444455555555555555555555555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.74 E-value=5.4e-06 Score=85.36 Aligned_cols=125 Identities=15% Similarity=0.140 Sum_probs=84.0
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCchHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005136 417 VSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASA-SVASLEKGKDLHGKIIKLGFPYDVFLGTALTDT 495 (712)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 495 (712)
..|...+....+.++.+.|..+|.+. ... ..+...|......-. ..++.+.|..+++...+.. +.++..+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 35666667777778888889999888 321 223334432221111 2336888999998888753 3334455556777
Q ss_pred HHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005136 496 YAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEK 545 (712)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 545 (712)
....|+.+.|..+|+.+. .....|...+..-...|+.+.+.+++++..+
T Consensus 364 e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778888899999998884 3456677777777778888888888887764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.74 E-value=9.7e-08 Score=82.80 Aligned_cols=126 Identities=8% Similarity=0.011 Sum_probs=100.6
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005136 554 TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGC 630 (712)
Q Consensus 554 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 630 (712)
.+..+...+...|++++|...|++.... .| +...+..++.++...|++++|...+++. ...| +...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3555666677778888888888877632 44 6777888888888889999998888876 3334 467788888889
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH--HHhcCCchhHHHHHHHHHh
Q 005136 631 KTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNI--YASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 631 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~eA~~~~~~~~~ 682 (712)
...|++++|...++++++..|+++.++..++.+ +.+.|++++|++.+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998888555554 8889999999999987754
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.2e-08 Score=77.83 Aligned_cols=101 Identities=11% Similarity=0.108 Sum_probs=87.5
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC--CCchHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE--HPAGYVLLSN 662 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 662 (712)
+...+..++..+...|++++|...+++. ... .+...+..+...+...|++++|...++++++..|+ ++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 5666778888889999999999999887 333 35677888888899999999999999999999999 9999999999
Q ss_pred HHHhc-CCchhHHHHHHHHHhCCCcc
Q 005136 663 IYASA-GRWIDAMNVRKLMTEKGLRK 687 (712)
Q Consensus 663 ~~~~~-g~~~eA~~~~~~~~~~~~~~ 687 (712)
++.+. |++++|++.+++..+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999 99999999999998876543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=1e-07 Score=79.00 Aligned_cols=114 Identities=11% Similarity=0.068 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSG 629 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 629 (712)
..+..+...+...|++++|+..|+++. ...| +...+..++.++...|++++|...+++. ...| +...+..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 345555555555666666666665554 2233 4555666666666666666666666655 2222 35556666666
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 005136 630 CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGR 669 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 669 (712)
+...|++++|...++++++..|+++.++..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 6677777777777777777777777777777777666553
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.70 E-value=9.1e-08 Score=78.48 Aligned_cols=98 Identities=8% Similarity=0.027 Sum_probs=76.9
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+...+..++..+.+.|++++|+..|++. ...| +...+..+..++...|++++|+..++++++++|+++.++..++.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3456667777888888888888888776 3334 4677777777788888888888888888888888888888888888
Q ss_pred HhcCCchhHHHHHHHHHhCC
Q 005136 665 ASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 665 ~~~g~~~eA~~~~~~~~~~~ 684 (712)
...|++++|+..+++.++..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 88888888888888877654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.6e-07 Score=86.73 Aligned_cols=125 Identities=13% Similarity=-0.020 Sum_probs=71.2
Q ss_pred HHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCH----HHHHHHHHHHhhc
Q 005136 558 VLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDS----NAWASLLSGCKTY 633 (712)
Q Consensus 558 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~ 633 (712)
+...+...|++++|.+.|+.+.. ..|+......++..+.+.++|++|+..|+.....|++ ..+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 34445556666666666666652 2342224555555666666666666666655333322 2344445556666
Q ss_pred CCHHHHHHHHHHHhccC--CC-CCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 634 KNEQIAERAVKNLWKLA--EE-HPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 634 g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
|++++|+..++++.... |. .+.+...++.++.+.|+.++|...|+++.+..+
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 66666666666665332 33 334566666666666666666666666666543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=4.7e-08 Score=79.28 Aligned_cols=97 Identities=15% Similarity=0.023 Sum_probs=84.6
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 005136 589 RHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYAS 666 (712)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 666 (712)
..+..++..+.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|+.++.+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34567788899999999999999987 4455 577788888889999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHhCCC
Q 005136 667 AGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 667 ~g~~~eA~~~~~~~~~~~~ 685 (712)
.|++++|+..+++.++..+
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 9999999999999987553
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.67 E-value=6.5e-06 Score=84.77 Aligned_cols=368 Identities=10% Similarity=0.053 Sum_probs=201.3
Q ss_pred hHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCC--CCceeHHHHHHHHHhcCC-hhHHHHHHHHHHhC-
Q 005136 235 VDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPE--RNEVSWSVMIARYNQSGY-PEEAFRLFRQMTRY- 310 (712)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~- 310 (712)
++.|..+|+++.. .+-. |+++.+..+|++... |++..|...+....+.+. .+.+..+|+.....
T Consensus 11 i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v 78 (493)
T 2uy1_A 11 LSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF 78 (493)
T ss_dssp -CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc
Confidence 6666666664432 2211 777888888877654 666677776666655553 35566666665542
Q ss_pred CCC-CCHHHHHHHHHHHhc----cCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCce
Q 005136 311 SFK-PNTSCFSIVLSALAS----LKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHV 385 (712)
Q Consensus 311 ~~~-p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 385 (712)
|.. ++...+...+..+.. .++.+.+..+++..+......-..+|......-.. .+...+..++.+..
T Consensus 79 g~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~~~------- 150 (493)
T 2uy1_A 79 ENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGDTL------- 150 (493)
T ss_dssp TTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHHHH-------
T ss_pred CCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHHHh-------
Confidence 432 355556666655432 34566677777777653221112233333222111 11222222222211
Q ss_pred eeHHHHHHHHhccCChhhHHHHhhcCC----CCCcccHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHHHH
Q 005136 386 VSWNSMIGGYGLNGQMEEAKELFDNMP----KRNDVSWSAIISGYLEHK-------QFDLVFAVFNEMLLSGEIPNKSTF 454 (712)
Q Consensus 386 ~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~g~~p~~~~~ 454 (712)
+.+..|..+++.+. ..+...|...+..-...+ ..+.+..+|++++... +.+...+
T Consensus 151 -------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW 216 (493)
T 2uy1_A 151 -------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVY 216 (493)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHH
Confidence 01111111111111 012224444333322211 0234667888877653 4456666
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHH-HHHhccCC------------CCCcchHH
Q 005136 455 SSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESS-RRVFDRMP------------DKNEISWT 521 (712)
Q Consensus 455 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~------------~~~~~~~~ 521 (712)
...+.-+...|+.+.|..++++.... +.+...+.. |....+.++. ..+.+... ......|.
T Consensus 217 ~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~ 290 (493)
T 2uy1_A 217 FFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRI 290 (493)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHH
Confidence 66677777888899999999988887 444333322 2221111111 11111110 00123566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc-ccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhh
Q 005136 522 VMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACS-HSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSR 600 (712)
Q Consensus 522 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 600 (712)
..+....+.++.+.|..+|+++ .. ...+...|......-. ..++.+.|..+|+...+.++- ++..+...++...+
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHH
Confidence 6777777788899999999998 32 1223344432222112 234699999999998855322 34556667787788
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 005136 601 SGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWK 648 (712)
Q Consensus 601 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 648 (712)
.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++..+
T Consensus 367 ~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 367 IGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999984 2466777777777788999999998888875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.5e-07 Score=82.39 Aligned_cols=130 Identities=9% Similarity=-0.028 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcH
Q 005136 489 GTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLV 568 (712)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 568 (712)
+..+...+...|++++|...|++..+++...|..+...+...|++++|++.+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44556667777778888877777776677777777777777788888888777777642 23445677777777777888
Q ss_pred HHHHHHHHhcchhcC-------------CCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC
Q 005136 569 DKGLKYFNSMEPIYN-------------IKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD 619 (712)
Q Consensus 569 ~~a~~~~~~~~~~~~-------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 619 (712)
++|+..|+++.+... ..| ....+..++.+|...|++++|...+++. ...|+
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 888777777763211 122 2366777777777778888887777776 44554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.1e-07 Score=76.64 Aligned_cols=116 Identities=10% Similarity=0.021 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSG 629 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 629 (712)
..+..+...+...|+++.|...|+++... .| +...+..++.++...|++++|...+++. ...| +...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 44556666677777777777777776632 34 5667777888888888888888888776 3333 46677777778
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 005136 630 CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWI 671 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 671 (712)
+...|++++|...++++++..|+++.++..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 888999999999999999999998889999999988888763
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.65 E-value=7.9e-08 Score=94.18 Aligned_cols=160 Identities=9% Similarity=0.037 Sum_probs=113.3
Q ss_pred CChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHH
Q 005136 500 GDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFN 576 (712)
Q Consensus 500 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 576 (712)
+++++|...++.... .+...+..+...+...|++++|+..|++.++. .|+...+ ..+.+.+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~--- 190 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQK--- 190 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHH---
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHH---
Confidence 334444444444332 13345666667777777777777777777663 3332110 0011110
Q ss_pred hcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 005136 577 SMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 577 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
..| ....+..++.+|.+.|++++|+..+++. ...| +...+..+..++...|++++|+..++++++++|++
T Consensus 191 -------~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 191 -------AQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp -------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred -------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 011 2577888999999999999999999887 3344 57788888888999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCCchhH-HHHHHHHHh
Q 005136 654 PAGYVLLSNIYASAGRWIDA-MNVRKLMTE 682 (712)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~eA-~~~~~~~~~ 682 (712)
+.++..++.++...|++++| ...+++|.+
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 556777654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.65 E-value=7.5e-08 Score=78.91 Aligned_cols=97 Identities=7% Similarity=-0.046 Sum_probs=74.9
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc-------hHH
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA-------GYV 658 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~ 658 (712)
...+..++..+.+.|++++|+..|++. ...|+ ...+..+..+|...|++++|+..+++++++.|+++. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345667788888888888888888876 34444 666777777888888888888888888888777653 677
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 659 LLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 659 ~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
.+|.++...|++++|++.+++.++..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77888888888888888888877643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3.3e-07 Score=74.75 Aligned_cols=113 Identities=15% Similarity=0.207 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF-EPDSNAWASLLSG 629 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 629 (712)
..+..+...+...|++++|.+.++++... .| +...+..++.++.+.|++++|..+++++ .. ..+...+..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 44555666666667777777777666532 33 4566667777777777777777777766 22 2346666777777
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 005136 630 CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAG 668 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 668 (712)
+...|++++|...++++++..|+++.++..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 778888888888888888888888888888887776654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.8e-07 Score=81.97 Aligned_cols=111 Identities=9% Similarity=-0.036 Sum_probs=60.2
Q ss_pred ChHHHHHHHhhCCC-CChhHHHHHHHHHHc----cCChHHHHHHhhhCCCC-C----cccHHHHHHHHHh----cCChhH
Q 005136 102 NLEEAQRLFDGMPE-RNEVSWTALISGFMK----HGRVEESMWYFERNPFQ-N----VISWTAAICGFVQ----NGFSFE 167 (712)
Q Consensus 102 ~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~----~~~~~~li~~~~~----~g~~~~ 167 (712)
++++|...|++..+ .++..+..|...|.. .+++++|..+|++.... + ..++..|...|.. .+++++
T Consensus 68 ~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 44555555544433 234445555555554 55666666666553322 1 3556666666665 566677
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHhcc------cchHHHHHHHHHHHHhC
Q 005136 168 ALKLFLKLLESGVKPNEVTFSSICKACAEI------NDFRLGLSVFGLIFKAG 214 (712)
Q Consensus 168 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~ 214 (712)
|+..|++..+. ..+...+..|...+... .+.++|...++...+.|
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77777766654 12333455555555432 26677777777666665
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.62 E-value=3e-08 Score=94.48 Aligned_cols=189 Identities=7% Similarity=-0.054 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHh
Q 005136 487 FLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFAC 562 (712)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 562 (712)
..+..+...+...|++++|...|+... ..+...|..+...+...|++++|+..+++..+ +.| +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 344455556666666666666666554 23455667777777777777777777777776 344 345666777777
Q ss_pred cccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 005136 563 SHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAER 641 (712)
Q Consensus 563 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 641 (712)
...|++++|+..|++..+. .|+ ...+...+....+..+...... .......++......+ ..+ ..|+.++|.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHH
Confidence 7788888888877776532 231 1111111111111111111111 1222223333333322 222 3789999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhc-CCchhHHHHHHHHHhC
Q 005136 642 AVKNLWKLAEEHPAGYVLLSNIYASA-GRWIDAMNVRKLMTEK 683 (712)
Q Consensus 642 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~eA~~~~~~~~~~ 683 (712)
.++++++.+|++......+...+.+. +++++|.++|+++.+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999888888888877776 7789999999887663
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.61 E-value=9.4e-08 Score=80.57 Aligned_cols=104 Identities=10% Similarity=0.051 Sum_probs=87.0
Q ss_pred CCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHH
Q 005136 548 ITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAW 623 (712)
Q Consensus 548 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~ 623 (712)
+.|+. ..+..+...+...|++++|+..|+++.. +.| +...|..++.+|...|++++|+..|++. ...|+ +..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 45543 4577778888899999999999999884 367 7888999999999999999999999987 44454 6778
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
..+..++...|++++|+..+++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8888889999999999999999999999854
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-07 Score=81.12 Aligned_cols=110 Identities=15% Similarity=0.058 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHH
Q 005136 551 NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLL 627 (712)
Q Consensus 551 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 627 (712)
+...+..+...+...|++++|+..|++..+. .| +...+..++.+|.+.|++++|+..+++. ...|+ ...+..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3456778888899999999999999998843 56 7888999999999999999999999987 44454 77888888
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 005136 628 SGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNI 663 (712)
Q Consensus 628 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 663 (712)
.++...|++++|...++++++++|+++..+...+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 889999999999999999999999998877666543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.9e-05 Score=74.94 Aligned_cols=225 Identities=11% Similarity=0.024 Sum_probs=162.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccC--chHHHHHHHHHHHHcCCCCchhhHHHHHHHH----Hhc---CC
Q 005136 432 FDLVFAVFNEMLLSGEIPNKS-TFSSVLCASASVA--SLEKGKDLHGKIIKLGFPYDVFLGTALTDTY----AKS---GD 501 (712)
Q Consensus 432 ~~~a~~~~~~~~~~g~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~ 501 (712)
.++|+..+..++..+ |+.. .++.--..+...+ +++++..++..+...+ +-+..+++.-..++ ... ++
T Consensus 49 s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 357788888877753 4433 3344444455556 7888888888887754 33444444333333 344 78
Q ss_pred hHHHHHHhccCC---CCCcchHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc------HHH
Q 005136 502 IESSRRVFDRMP---DKNEISWTVMVRGLAESGYAK--ESINLFEEMEKTSITPNELTILSVLFACSHSGL------VDK 570 (712)
Q Consensus 502 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 570 (712)
++++..+++.+. .++..+|+.-...+...|+++ ++++.++++++.. .-|...|+.-.....+.+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 889999888876 356667877777788888888 9999999999853 2355677766666666665 899
Q ss_pred HHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 005136 571 GLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSE-AEDFINSM-PF----EPDSNAWASLLSGCKTYKNEQIAERAV 643 (712)
Q Consensus 571 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~ 643 (712)
+++.++++.. ..| |...|+.+...+.+.|+..+ +..++++. .. ..++..+..++..+.+.|+.++|.+++
T Consensus 205 El~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 205 ELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999998883 377 88899999999988888544 55677776 22 345778888888898999999999999
Q ss_pred HHHhc-cCCCCCchHHHHHHH
Q 005136 644 KNLWK-LAEEHPAGYVLLSNI 663 (712)
Q Consensus 644 ~~~~~-~~p~~~~~~~~l~~~ 663 (712)
+++.+ .+|-....+...+..
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHhccChHHHHHHHHHHhh
Confidence 99996 799887777766543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.58 E-value=3e-07 Score=84.94 Aligned_cols=140 Identities=12% Similarity=-0.028 Sum_probs=107.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc--hHHHHHHHHH
Q 005136 520 WTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN--GRHYTCVVDM 597 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 597 (712)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..++.+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344667788999999999999888763 465555556666788999999999999876521 1 221 3477889999
Q ss_pred hhhcCChHHHHHHHHhCCCC---CC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 598 LSRSGRLSEAEDFINSMPFE---PD--SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~---p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+.+.|++++|+..|++.... |. ...+.....++.+.|+.++|...+++++..+|+ +.+...|...-
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~ 251 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPS 251 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTT
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCC
Confidence 99999999999999987222 43 345667777789999999999999999999998 77666665433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.9e-07 Score=75.94 Aligned_cols=98 Identities=8% Similarity=0.000 Sum_probs=75.4
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+...+..++..+...|++++|...+++. ...| +...+..+..++...|++++|...++++++.+|+++.++..++.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 5667777777788888888888877775 3333 3666777777778888888888888888888888888888888888
Q ss_pred HhcCCchhHHHHHHHHHhCC
Q 005136 665 ASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 665 ~~~g~~~eA~~~~~~~~~~~ 684 (712)
...|++++|+..+++.++..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 88888888888888877644
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=4.1e-07 Score=73.27 Aligned_cols=97 Identities=10% Similarity=0.036 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
...+..++..+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|+++.++..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344555555566666666666666554 2222 34555555555666666666666666666666666666666666666
Q ss_pred hcCCchhHHHHHHHHHhCC
Q 005136 666 SAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 666 ~~g~~~eA~~~~~~~~~~~ 684 (712)
..|++++|.+.+++..+.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 6666666666666665543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.3e-07 Score=75.07 Aligned_cols=99 Identities=12% Similarity=0.091 Sum_probs=90.5
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+...+..++..+.+.|++++|...+++. ...| +...+..+...+...|++++|...++++++..|+++.++..++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 6778899999999999999999999987 4455 5778888888899999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhCCC
Q 005136 665 ASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 665 ~~~g~~~eA~~~~~~~~~~~~ 685 (712)
.+.|++++|++.+++.++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHhhHHHHHHHHHHHHHhCC
Confidence 999999999999999988654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=80.33 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=89.2
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CC
Q 005136 540 FEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF 616 (712)
Q Consensus 540 ~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 616 (712)
++++.. +.|+. ..+..+...+...|++++|+..|+++... .| +...+..++.+|...|++++|+..+++. ..
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444443 44543 45666777888889999999998888733 56 7788888999999999999999999887 33
Q ss_pred CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHH
Q 005136 617 EP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYV 658 (712)
Q Consensus 617 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 658 (712)
.| +...+..+..++...|++++|+..+++++++.|++|....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 44 4677788888899999999999999999999999876543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=6.2e-07 Score=75.82 Aligned_cols=98 Identities=9% Similarity=-0.050 Sum_probs=61.6
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLS 661 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 661 (712)
+...+..++..+...|++++|...+++. ...|+ ...+..+...+...|++++|...++++++..|+++.++..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4555556666666666666666666655 44454 344555555566666666666666666666666666666666
Q ss_pred HHHHhcCCchhHHHHHHHHHhCC
Q 005136 662 NIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 662 ~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
.++...|++++|+.++++.++..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Confidence 66666666666666666666543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-06 Score=79.00 Aligned_cols=153 Identities=9% Similarity=0.011 Sum_probs=90.0
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchh---cCCCC-chHHHHHHHHHhhhcCCh
Q 005136 529 ESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPI---YNIKP-NGRHYTCVVDMLSRSGRL 604 (712)
Q Consensus 529 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~~~g~~ 604 (712)
..|++++|.+.++.+... .......+..+...+...|++++|...+++.... .+..| ....+..++.++...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 455666666643333221 1112345555556666666666666666655421 11222 345666777777777777
Q ss_pred HHHHHHHHhC-C---CCC-C----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC--C----CchHHHHHHHHHhcCC
Q 005136 605 SEAEDFINSM-P---FEP-D----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE--H----PAGYVLLSNIYASAGR 669 (712)
Q Consensus 605 ~~A~~~~~~~-~---~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~ 669 (712)
++|...+++. . ..+ + ...+..+...+...|++++|...++++++..+. + ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777664 1 122 2 233555666677788888888888887764322 2 1245778888888888
Q ss_pred chhHHHHHHHHHh
Q 005136 670 WIDAMNVRKLMTE 682 (712)
Q Consensus 670 ~~eA~~~~~~~~~ 682 (712)
+++|.+.+++.++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.51 E-value=6.4e-07 Score=72.99 Aligned_cols=98 Identities=14% Similarity=0.210 Sum_probs=88.4
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
...+..++..+...|++++|.+.++++ ... .+...+..+...+...|++++|...++++++..|+++.++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999987 333 457778888888999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhCCC
Q 005136 666 SAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 666 ~~g~~~eA~~~~~~~~~~~~ 685 (712)
..|++++|..+++++.+..+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999988654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=3.7e-07 Score=81.81 Aligned_cols=167 Identities=8% Similarity=-0.060 Sum_probs=103.5
Q ss_pred HhcCChHHHHHHhccCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHH
Q 005136 497 AKSGDIESSRRVFDRMPDK---NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLK 573 (712)
Q Consensus 497 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 573 (712)
...|+++.+.+.++...+. ....+..+...+...|++++|+..|++..+ +.|+...+... ....-.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~--------~~~~~~- 83 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ--------ILLDKK- 83 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------HHHHHH-
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------hHHHHH-
Confidence 3445566665555543321 233455666677777777777777777776 33332111000 000000
Q ss_pred HHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 005136 574 YFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 574 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 651 (712)
. ......+..++.+|.+.|++++|+..+++. ...| +...+..+..++...|++++|...+++++++.|
T Consensus 84 --~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 84 --K--------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp --H--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred --H--------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 0 002367778888999999999999998887 3334 577788888889999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCchhHH-HHHHHHHhCC
Q 005136 652 EHPAGYVLLSNIYASAGRWIDAM-NVRKLMTEKG 684 (712)
Q Consensus 652 ~~~~~~~~l~~~~~~~g~~~eA~-~~~~~~~~~~ 684 (712)
+++.++..++.++...|+.+++. ..+.++...+
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 154 NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999888888 5566665544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.51 E-value=7.8e-06 Score=78.39 Aligned_cols=205 Identities=9% Similarity=-0.043 Sum_probs=138.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhh---HHHHHHHHHhcCChHHHHHHhccC
Q 005136 436 FAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFL---GTALTDTYAKSGDIESSRRVFDRM 512 (712)
Q Consensus 436 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 512 (712)
...+.++......|+..++..+...+.-.-+ .+.......+... +...+..+...|++++|...++..
T Consensus 31 ~~~~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~ 101 (293)
T 3u3w_A 31 QSEVSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNE 101 (293)
T ss_dssp HHHHHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445555444456777777766665543221 1111111222222 223456778889999999999876
Q ss_pred CCCC---cc------hHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHhcccCcHHHHHHHHHhc
Q 005136 513 PDKN---EI------SWTVMVRGLAESGYAKESINLFEEMEKTSIT-PN----ELTILSVLFACSHSGLVDKGLKYFNSM 578 (712)
Q Consensus 513 ~~~~---~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 578 (712)
.+.. .. .+..+...+...|++++|+..++++.+.... ++ ..+++.+...|...|++++|+.+|+++
T Consensus 102 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 102 LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5321 11 2334566667778999999999999884322 22 236888999999999999999999988
Q ss_pred chhc----CCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHhhcC-CHHHHHHHHH
Q 005136 579 EPIY----NIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-------PFEPD-SNAWASLLSGCKTYK-NEQIAERAVK 644 (712)
Q Consensus 579 ~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~ 644 (712)
.+.. +..+ ...++..++.+|.+.|++++|...+++. ...+. ...+..+..++...| ++++|...++
T Consensus 182 l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 182 LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 7321 2223 3457889999999999999999998876 11222 677888888899999 4699999999
Q ss_pred HHhcc
Q 005136 645 NLWKL 649 (712)
Q Consensus 645 ~~~~~ 649 (712)
+++++
T Consensus 262 ~Al~i 266 (293)
T 3u3w_A 262 KASFF 266 (293)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.50 E-value=9.6e-07 Score=76.23 Aligned_cols=97 Identities=8% Similarity=0.002 Sum_probs=62.0
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+...+..++..+.+.|++++|+..|++. ...| +...+..+..+|...|++++|+..++++++++|+++.++..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4555666666666666666666666665 2233 3555566666666666666666666666666666666666666666
Q ss_pred HhcCCchhHHHHHHHHHhC
Q 005136 665 ASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 665 ~~~g~~~eA~~~~~~~~~~ 683 (712)
...|++++|+..+++.++.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 6666666666666666553
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.7e-06 Score=83.09 Aligned_cols=162 Identities=9% Similarity=-0.058 Sum_probs=116.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHhccCCC---CCc------chHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HH
Q 005136 488 LGTALTDTYAKSGDIESSRRVFDRMPD---KNE------ISWTVMVRGLAESGYAKESINLFEEMEKTSI---TPN--EL 553 (712)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~--~~ 553 (712)
.+...+..+...|++++|.+.++...+ ... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344556677888899998888875432 111 1233455667778899999999998876321 112 34
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc-----hHHHHHHHHHhhhcCChHHHHHHHHhC-CC------CC-CH
Q 005136 554 TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN-----GRHYTCVVDMLSRSGRLSEAEDFINSM-PF------EP-DS 620 (712)
Q Consensus 554 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~ 620 (712)
+++.+...|...|++++|+.+|+++.+.....|+ ..++..++.+|.+.|++++|...+++. .. .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999999987632111222 258889999999999999999999876 11 11 15
Q ss_pred HHHHHHHHHHhhcCCHHHH-HHHHHHHhcc
Q 005136 621 NAWASLLSGCKTYKNEQIA-ERAVKNLWKL 649 (712)
Q Consensus 621 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 649 (712)
..+..+...|...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6778888889999999999 7888888754
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.9e-07 Score=78.77 Aligned_cols=123 Identities=8% Similarity=0.088 Sum_probs=101.4
Q ss_pred hcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HhhcCCH-
Q 005136 562 CSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSG-CKTYKNE- 636 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~- 636 (712)
+...|++++|+..+++.... .| +...+..++.+|...|++++|...+++. ...| +...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 45678899999999888743 55 6788999999999999999999999987 3333 56777777777 7788998
Q ss_pred -HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCcc
Q 005136 637 -QIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRK 687 (712)
Q Consensus 637 -~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 687 (712)
++|...++++++..|+++.++..++.++...|++++|+..++++++..+..
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999999999999999876543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.48 E-value=4.1e-07 Score=75.53 Aligned_cols=94 Identities=13% Similarity=0.012 Sum_probs=71.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHhhcCCHHHHHHHHHHHhcc------
Q 005136 590 HYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-------------SNAWASLLSGCKTYKNEQIAERAVKNLWKL------ 649 (712)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 649 (712)
.+...+..+.+.|++++|+..|++. ...|+ ...|.....++...|++++|+..+++++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3444555566666666666666654 22222 237777777788888888888888888888
Q ss_pred -CCCCCchH----HHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 650 -AEEHPAGY----VLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 650 -~p~~~~~~----~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
+|+++.+| +..|.++...|++++|+..|++.++.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999 99999999999999999999998874
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-06 Score=69.73 Aligned_cols=109 Identities=14% Similarity=0.109 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSG 629 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 629 (712)
..+..+...+...|++++|...|++.... .| +...+..++.++...|++++|...+++. ...| +...+..+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555666667777777777777777632 44 5677778888888888888888888776 3334 46677778888
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 630 CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+...|++++|...++++++..|+++.++..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88999999999999999999999888887777654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=9.2e-07 Score=72.72 Aligned_cols=99 Identities=10% Similarity=0.071 Sum_probs=89.4
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+...+..++..+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|+++.++..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 5678888999999999999999999987 3334 5778888888899999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhCCC
Q 005136 665 ASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 665 ~~~g~~~eA~~~~~~~~~~~~ 685 (712)
...|++++|+.++++.++..+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST
T ss_pred HHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999999988654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.2e-07 Score=74.76 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=46.3
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHH
Q 005136 594 VVDMLSRSGRLSEAEDFINSM-PFEPD-S---NAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH---PAGYVLLSNIYA 665 (712)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 665 (712)
++..+...|++++|...+++. ...|+ . ..+..+..++...|++++|...++++++..|++ +.++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344445555555555555544 11222 1 244444444555555555555555555555555 444555555555
Q ss_pred hcCCchhHHHHHHHHHhC
Q 005136 666 SAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 666 ~~g~~~eA~~~~~~~~~~ 683 (712)
..|++++|+..++++++.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 555555555555555543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.1e-07 Score=72.39 Aligned_cols=110 Identities=13% Similarity=-0.026 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSG 629 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 629 (712)
..+..+...+...|++++|+..|++..+. .| +...+..++.+|.+.|++++|+..+++. ...| +...+..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34555666677777777777777776632 45 5677778888888888888888888776 3344 36677777778
Q ss_pred HhhcCCHHHHHHHHHHHhccC------CCCCchHHHHHHHHH
Q 005136 630 CKTYKNEQIAERAVKNLWKLA------EEHPAGYVLLSNIYA 665 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 665 (712)
+...|++++|...++++++++ |+++.+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 888889999999999998888 777777777666544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.3e-06 Score=72.20 Aligned_cols=113 Identities=10% Similarity=-0.064 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc----hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 005136 551 NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN----GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWA 624 (712)
Q Consensus 551 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 624 (712)
+...+..+...+...|++++|+..|++.. ...|+ ...+..++.+|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 34456666666777777777777777766 23454 567777888888888888888888776 3334 466777
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 005136 625 SLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYAS 666 (712)
Q Consensus 625 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 666 (712)
.+..++...|++++|...++++++..|+++.++..+..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 788888899999999999999999999988887777766544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.42 E-value=7.8e-07 Score=74.59 Aligned_cols=106 Identities=14% Similarity=0.061 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSG 629 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 629 (712)
..+..+...+...|++++|+..|+++... .| +...+..++.+|.+.|++++|+..+++. ...| ++..+..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34555666777788888888888877633 55 6777888888888888888888888876 3334 35667777788
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 005136 630 CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLS 661 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 661 (712)
+...|++++|...+++++++.|+++.......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 88999999999999999999998877655433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.42 E-value=5.9e-07 Score=77.41 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 622 AWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 622 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
.+..+..+|...|++++|+..++++++++|+++.++..+|.+|...|++++|+..+++.++.
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34444444555555555555555555555555555555555555555555555555555543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.9e-07 Score=87.94 Aligned_cols=150 Identities=11% Similarity=-0.009 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHh
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDML 598 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 598 (712)
.+..+...+...|++++|+..|++.+. +.|+... +...|+.+++...+. ...+..++.+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 455566666777788888888887776 3454332 223344444433221 23788899999
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH-HhcCCchhHHH
Q 005136 599 SRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY-ASAGRWIDAMN 675 (712)
Q Consensus 599 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~eA~~ 675 (712)
.+.|++++|+..+++. ...| +...+..+..+|...|++++|+..++++++++|+++.++..|+.+. ...+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987 4445 5778888999999999999999999999999999999999999884 45678888999
Q ss_pred HHHHHHhCCCccC
Q 005136 676 VRKLMTEKGLRKS 688 (712)
Q Consensus 676 ~~~~~~~~~~~~~ 688 (712)
.+++|.+..+...
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999987655443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=4.1e-07 Score=81.52 Aligned_cols=120 Identities=9% Similarity=-0.052 Sum_probs=90.6
Q ss_pred cccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-----------------HHHH
Q 005136 563 SHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-----------------SNAW 623 (712)
Q Consensus 563 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----------------~~~~ 623 (712)
...|+++++.+.|+..... .+ ....+..++..+.+.|++++|...|++. ...|+ ...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE---KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp -------CCCSGGGCCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3445566665555543311 22 3556777888888999999999988876 22221 2677
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
..+..++...|++++|+..++++++.+|+++.++..++.+|...|++++|++.+++.++..+
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 88888899999999999999999999999999999999999999999999999999987653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-07 Score=75.21 Aligned_cols=60 Identities=20% Similarity=0.164 Sum_probs=30.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 623 WASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 623 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+..+...+...|++++|+..++++++.+|+++.++..++.++.+.|++++|++.+++.++
T Consensus 30 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 30 YLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555555555555555555555554444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2.4e-06 Score=73.85 Aligned_cols=98 Identities=9% Similarity=0.059 Sum_probs=88.0
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
...+..++..+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|+++.++..++.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456778899999999999999999987 3334 57788888888999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhCCC
Q 005136 666 SAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 666 ~~g~~~eA~~~~~~~~~~~~ 685 (712)
..|++++|+++++++++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p 112 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP 112 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST
T ss_pred HhccHHHHHHHHHHHHHhCC
Confidence 99999999999999988654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-06 Score=71.85 Aligned_cols=107 Identities=11% Similarity=0.046 Sum_probs=55.9
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CC----CCC----HHHH
Q 005136 554 TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF----EPD----SNAW 623 (712)
Q Consensus 554 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~ 623 (712)
.+..+...+...|++++|...|+++... .| +...+..++.++...|++++|...+++. .. .++ ...+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3445555555666666666666655522 23 4455555555566666666666555554 11 111 3444
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
..+...+...|++++|...++++++..| ++.....++.+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 4455555555566666666665555555 344444444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-06 Score=90.08 Aligned_cols=117 Identities=9% Similarity=0.020 Sum_probs=95.9
Q ss_pred HHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC
Q 005136 559 LFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKN 635 (712)
Q Consensus 559 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 635 (712)
...+...|++++|++.|+++.+. .| +...+..++.+|.+.|++++|++.+++. ...| +...+..+..+|...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34566778888888888888743 56 6788889999999999999999999887 4445 47778888888999999
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHH--HHhcCCchhHHHHHH
Q 005136 636 EQIAERAVKNLWKLAEEHPAGYVLLSNI--YASAGRWIDAMNVRK 678 (712)
Q Consensus 636 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~eA~~~~~ 678 (712)
+++|++.+++++++.|+++.++..++.+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999988 889999999999988
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-06 Score=71.11 Aligned_cols=112 Identities=10% Similarity=-0.094 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005136 551 NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLL 627 (712)
Q Consensus 551 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 627 (712)
+...+..+...+...|++++|+..|++.... .| +...+..++.++...|++++|...+++. ...| +...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 4556677777777778888888877777633 44 5677788888888888888888888776 3334 466777788
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCC-----CCchHHHHHHHHH
Q 005136 628 SGCKTYKNEQIAERAVKNLWKLAEE-----HPAGYVLLSNIYA 665 (712)
Q Consensus 628 ~~~~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~~ 665 (712)
.++...|++++|...++++++..|+ +..+...+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999888877 4555555554433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.32 E-value=2.8e-06 Score=87.00 Aligned_cols=159 Identities=6% Similarity=-0.003 Sum_probs=107.0
Q ss_pred ChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHh
Q 005136 501 DIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNS 577 (712)
Q Consensus 501 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 577 (712)
++++|...|+.... .....|..+...+.+.|++++|+..|++.++. .|+...+ . .+... +
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----~ 311 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----A 311 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----H
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----H
Confidence 44444444443332 12335666677777777777777777777762 3322110 0 00000 0
Q ss_pred cchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 578 MEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 578 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
. .+ ....|..++.+|.+.|++++|+..+++. ...| +...+..+..+|...|++++|...++++++++|+++
T Consensus 312 ~------~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 312 S------ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp H------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred H------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 0 11 3567888999999999999999999887 3344 477888888899999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchhHHH-HHHHHHh
Q 005136 655 AGYVLLSNIYASAGRWIDAMN-VRKLMTE 682 (712)
Q Consensus 655 ~~~~~l~~~~~~~g~~~eA~~-~~~~~~~ 682 (712)
.++..++.++.+.|++++|.. .+++|..
T Consensus 386 ~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 386 AARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988875 4555544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.31 E-value=4e-06 Score=75.25 Aligned_cols=156 Identities=10% Similarity=-0.017 Sum_probs=89.6
Q ss_pred ccCChHHHHH---HhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHhcccchH
Q 005136 130 KHGRVEESMW---YFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLES----GVKP-NEVTFSSICKACAEINDFR 201 (712)
Q Consensus 130 ~~g~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~~~~~ 201 (712)
..|++++|.+ ++...+.....++..+...+...|++++|...+++..+. |..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 554433344556677777777777777777777776552 1111 2345666777777888888
Q ss_pred HHHHHHHHHHHhC--CC----CCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhh
Q 005136 202 LGLSVFGLIFKAG--FE----KHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDE 275 (712)
Q Consensus 202 ~a~~~~~~~~~~~--~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 275 (712)
+|...++...+.. .+ .....+..+...+...|++++|...+++.. .+...
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------------------~~~~~ 139 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL------------------------VYAQQ 139 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH------------------------HHHHh
Confidence 8888887766541 11 113345666667777777777777776332 22222
Q ss_pred CCCCC--ceeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005136 276 MPERN--EVSWSVMIARYNQSGYPEEAFRLFRQMTR 309 (712)
Q Consensus 276 ~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 309 (712)
...+. ..++..+...+...|++++|.+.+++..+
T Consensus 140 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 140 ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 21111 12345556666667777777766666543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-06 Score=71.65 Aligned_cols=94 Identities=11% Similarity=0.086 Sum_probs=51.2
Q ss_pred HHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CC----CCC----HHHHHH
Q 005136 556 LSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF----EPD----SNAWAS 625 (712)
Q Consensus 556 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 625 (712)
..+...+.+.|++++|+..|++..+ +.| +...+..++.+|.+.|++++|+..+++. .. .++ ...+..
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~---~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIE---LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3444444555555555555555442 234 3445555555555555555555555543 11 111 124455
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 626 LLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 626 l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
+..++...|++++|++.++++++..|+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 556677777888888888877777665
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=2e-06 Score=69.58 Aligned_cols=97 Identities=9% Similarity=0.022 Sum_probs=63.0
Q ss_pred HHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHh
Q 005136 555 ILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCK 631 (712)
Q Consensus 555 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 631 (712)
+..+...+.+.|++++|+..|+++... .| +...+..++.++...|++++|+..+++. ...|+ ...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334455566667777777777766632 55 5667777777777777777777777776 33443 566667777777
Q ss_pred hcCCHHHHHHHHHHHhccCCCCC
Q 005136 632 TYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 632 ~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
..|++++|...++++++.+|+++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888877754
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.28 E-value=2.1e-06 Score=84.92 Aligned_cols=136 Identities=12% Similarity=0.012 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDM 597 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 597 (712)
.+..+...+...|++++|++.|++.++. .|... .... .+... ...| +...+..++.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHHH
Confidence 3555666666777777777777766651 11100 0000 11111 1244 57788999999
Q ss_pred hhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHH
Q 005136 598 LSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMN 675 (712)
Q Consensus 598 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 675 (712)
|.+.|++++|+..+++. ...|+ ...+..+..+|...|++++|...+++++++.|+++.++..++.++...|+.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 55554 77888888889999999999999999999999999999999999999998888765
Q ss_pred H
Q 005136 676 V 676 (712)
Q Consensus 676 ~ 676 (712)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.27 E-value=4.4e-06 Score=79.37 Aligned_cols=112 Identities=9% Similarity=-0.093 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHH
Q 005136 551 NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLL 627 (712)
Q Consensus 551 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 627 (712)
+...+..+...+...|++++|+..|+++... .| +...+..++.+|.+.|++++|...+++. ...|+ ...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3455666677777777788888777777633 55 5667777777777777777777777775 44443 55666666
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 628 SGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 628 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
.++...|++++|+..+++++++.|+++..+..+++...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 66777777777777777777777776554444444433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=6.1e-05 Score=72.15 Aligned_cols=234 Identities=12% Similarity=0.034 Sum_probs=110.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC-chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc-C-C
Q 005136 426 YLEHKQFDLVFAVFNEMLLSGEIPNK-STFSSVLCASASVA-SLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKS-G-D 501 (712)
Q Consensus 426 ~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 501 (712)
..+.+..++|+.++++++..+ |+. ..++.--..+...| .++++..++..+.... +-+..+++.-..++.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 344445567777777777653 333 23333333333444 4666666666666543 33444444444444443 4 5
Q ss_pred hHHHHHHhccCCCC---CcchHHHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc---
Q 005136 502 IESSRRVFDRMPDK---NEISWTVMVRGLAESGYAK--------ESINLFEEMEKTSITPNELTILSVLFACSHSGL--- 567 (712)
Q Consensus 502 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--- 567 (712)
++++.++++.+.+. +...|+.-...+...|.++ ++++.++++++.. .-|...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 55666666555533 2334444333333434343 5555555555521 1233444444444444443
Q ss_pred ----HHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHH--HHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHH
Q 005136 568 ----VDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSE--AEDFINSM--PFEPDSNAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 568 ----~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~--A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~ 638 (712)
++++++.++++.. ..| |...|+.+...+.+.|+... -....=.- .+.|. ...
T Consensus 220 ~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~ 280 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPD----------------IET 280 (349)
T ss_dssp CHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------------------------
T ss_pred chHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCccccccccccccccccccc----------------chh
Confidence 3445555544441 234 44444444444444333200 00000000 00000 122
Q ss_pred HHHHHHHHhcc------CCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 639 AERAVKNLWKL------AEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 639 a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
.......+... .+.++.++..|+.+|...|+.++|.++++.+.+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 281 VEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp -----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222222222 256777888999999999999999999998864
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.26 E-value=2e-06 Score=84.20 Aligned_cols=118 Identities=8% Similarity=-0.069 Sum_probs=96.6
Q ss_pred cCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----------------HHHHHHH
Q 005136 565 SGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD----------------SNAWASL 626 (712)
Q Consensus 565 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l 626 (712)
.+++++|+..|+.... ..| +...+..++..|.+.|++++|+..|++. ...|+ ...+..+
T Consensus 126 L~~~~~A~~~~~~a~~---~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSE---EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHH---HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 3455555555554442 245 5667888888889999999999988876 33333 4788888
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 627 LSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 627 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
..++...|++++|+..++++++++|+++.++..++.+|...|++++|+..++++++..+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 261 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 261 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999988654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=9.9e-05 Score=70.36 Aligned_cols=179 Identities=11% Similarity=0.042 Sum_probs=112.3
Q ss_pred hHHHHHHhccCC---CCCcchHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc-HHHHHHHH
Q 005136 502 IESSRRVFDRMP---DKNEISWTVMVRGLAESG--YAKESINLFEEMEKTSITPNELTILSVLFACSHSGL-VDKGLKYF 575 (712)
Q Consensus 502 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~ 575 (712)
++++..+++.+. .++..+|+.-...+...+ ++++++..++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555555544 345556666555666666 3677777777777732 2245566655555556666 47777777
Q ss_pred HhcchhcCCCC-chHHHHHHHHHhhhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc-----
Q 005136 576 NSMEPIYNIKP-NGRHYTCVVDMLSRS--------------GRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTY----- 633 (712)
Q Consensus 576 ~~~~~~~~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----- 633 (712)
+.+.+. .| |...|+....++.+. +.++++++.+++. ...| +...|..+-..+...
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 777633 55 666666666555544 3466777777765 3344 355555444444333
Q ss_pred ------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHH---hcCCchhHHHHHHHHHhCC
Q 005136 634 ------KNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA---SAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 634 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~eA~~~~~~~~~~~ 684 (712)
+.++++++.++++++..|++...+..++.... ..|..+++..++.++++-+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 45788889999999999998776666654432 4677888888888888754
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.6e-06 Score=67.43 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=70.1
Q ss_pred HHHHhcccCcHHHHHHHHHhcchhcCCCC-ch---HHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 005136 558 VLFACSHSGLVDKGLKYFNSMEPIYNIKP-NG---RHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD----SNAWASLLS 628 (712)
Q Consensus 558 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 628 (712)
+...+...|++++|...|+.+... .| +. ..+..++.++.+.|++++|...+++. ...|+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 444555666666666666666533 23 22 46667777777888888888777776 22333 455667777
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 629 GCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 629 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
++...|++++|...++++++..|+++.+......+-
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 788889999999999999988888776555444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.23 E-value=6.5e-06 Score=65.28 Aligned_cols=99 Identities=16% Similarity=0.115 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC---CHHHHHHHH
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP---DSNAWASLL 627 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~ 627 (712)
..+..+...+...|++++|...|+++.+. .| +...+..++.++...|++++|...+++. ...| +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 44555666666777777777777776632 34 5667777788888888888888888776 3333 466777777
Q ss_pred HHHhhc-CCHHHHHHHHHHHhccCCCCC
Q 005136 628 SGCKTY-KNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 628 ~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 654 (712)
..+... |++++|.+.++++++..|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 778888 888888888888888888754
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-06 Score=75.05 Aligned_cols=81 Identities=16% Similarity=0.029 Sum_probs=66.5
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC-chHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP-AGYVLLSNI 663 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 663 (712)
+...+..++.+|.+.|++++|+..+++. ...| +...+..+..++...|++++|...++++++++|+++ .+...|..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4568888999999999999999999887 4445 477888888889999999999999999999999988 556566555
Q ss_pred HHhc
Q 005136 664 YASA 667 (712)
Q Consensus 664 ~~~~ 667 (712)
....
T Consensus 142 ~~~~ 145 (162)
T 3rkv_A 142 TERR 145 (162)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.22 E-value=4.2e-06 Score=71.85 Aligned_cols=93 Identities=17% Similarity=0.138 Sum_probs=64.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC------CCc
Q 005136 590 HYTCVVDMLSRSGRLSEAEDFINSM----PFEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE------HPA 655 (712)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 655 (712)
.+..++..+...|++++|...+++. +..++ ...+..+...+...|++++|...++++++..+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 5556666666777777776666654 11111 334555666677788888888888888765322 245
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 656 GYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 656 ~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
++..++.++...|++++|.+.+++.++
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 788899999999999999999988775
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.1e-05 Score=82.39 Aligned_cols=163 Identities=6% Similarity=-0.074 Sum_probs=116.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHhcccCcHHHHHHHHHhcchh---cCCCC-chHH
Q 005136 520 WTVMVRGLAESGYAKESINLFEEMEKTS-ITPNE----LTILSVLFACSHSGLVDKGLKYFNSMEPI---YNIKP-NGRH 590 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~ 590 (712)
+..++..|...|++++|.+.+.++.+.- ..++. ...+.+...+...|+++.|..+++..... .+..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5667788888888888888888766521 11222 12333444556678899998888776521 12223 3567
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-----CC--CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC---CC----Cc
Q 005136 591 YTCVVDMLSRSGRLSEAEDFINSM-----PF--EPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAE---EH----PA 655 (712)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~-----~~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~----~~ 655 (712)
+..++..|...|++++|..+++++ .. .+. ...+...+..|...|++++|...+++++...+ ++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 788999999999999999998875 11 222 45667777889999999999999999887532 22 24
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 656 GYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 656 ~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
++..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 667788888999999999998887765
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00038 Score=66.68 Aligned_cols=175 Identities=10% Similarity=0.033 Sum_probs=119.9
Q ss_pred HHHHHHHHhccCChhhHHHHhhcCCC--C-CcccHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005136 388 WNSMIGGYGLNGQMEEAKELFDNMPK--R-NDVSWSAIISGYLEHK-QFDLVFAVFNEMLLSGEIPNKSTFSSVLCASAS 463 (712)
Q Consensus 388 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 463 (712)
++.+-......+..++|+++++.+.. | +..+|+.-...+...+ .+++++..++.++... +-+...+..--..+..
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 33444444555666789999999874 3 3456777777787888 5999999999999864 3345555544444444
Q ss_pred c-C-chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChH--------HHHHHhccCCC---CCcchHHHHHHHHHHc
Q 005136 464 V-A-SLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIE--------SSRRVFDRMPD---KNEISWTVMVRGLAES 530 (712)
Q Consensus 464 ~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 530 (712)
. + +++++.+++..+.+.. +-+...+..-..++.+.|.++ ++.+.++++.+ .|...|+.....+...
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 4 5 7889999999988653 445566665555555555555 78888887763 4666788887777777
Q ss_pred CC-------hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccC
Q 005136 531 GY-------AKESINLFEEMEKTSITPNE-LTILSVLFACSHSG 566 (712)
Q Consensus 531 ~~-------~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 566 (712)
++ ++++++.+++++. ..|+. ..|+.+-..+.+.|
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred cccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcC
Confidence 76 6899999999988 45654 55555554444444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.9e-06 Score=69.35 Aligned_cols=94 Identities=9% Similarity=-0.011 Sum_probs=68.4
Q ss_pred cCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHH
Q 005136 565 SGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAER 641 (712)
Q Consensus 565 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 641 (712)
.|++++|+..|+++.+...-.| +...+..++.+|...|++++|+..+++. ...| +...+..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4667777777777762100035 5677888888888999999999888887 3344 36777778888889999999999
Q ss_pred HHHHHhccCCCCCchHH
Q 005136 642 AVKNLWKLAEEHPAGYV 658 (712)
Q Consensus 642 ~~~~~~~~~p~~~~~~~ 658 (712)
.++++++..|+++.+..
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999999998876554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.18 E-value=3.8e-06 Score=68.98 Aligned_cols=96 Identities=7% Similarity=0.053 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC-------CchHHH
Q 005136 589 RHYTCVVDMLSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH-------PAGYVL 659 (712)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 659 (712)
..+..++..+...|++++|...+++. ... .+...+..+...+...|++++|...++++++..|++ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44555666666666666666666655 222 234555555555666666666666666666665554 556666
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 660 LSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 660 l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
++.++...|++++|++.++++++..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC
Confidence 6666666666666666666665543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=9.2e-07 Score=70.35 Aligned_cols=92 Identities=9% Similarity=-0.028 Sum_probs=79.1
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC------CchHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH------PAGYV 658 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 658 (712)
+...+..++..+.+.|++++|+..+++. ...| +...+..+..++...|++++|+..++++++++|++ +.++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 5667788899999999999999999887 3344 57778888888999999999999999999999998 78899
Q ss_pred HHHHHHHhcCCchhHHHHHH
Q 005136 659 LLSNIYASAGRWIDAMNVRK 678 (712)
Q Consensus 659 ~l~~~~~~~g~~~eA~~~~~ 678 (712)
.++.++...|++++|++.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 99999999999988877654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=8.4e-05 Score=77.81 Aligned_cols=167 Identities=11% Similarity=0.011 Sum_probs=129.3
Q ss_pred ChHHHHHHhccCCC---CCcchHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccC
Q 005136 501 DIESSRRVFDRMPD---KNEISWTVMVRGLAESGY----------AKESINLFEEMEKTSITP-NELTILSVLFACSHSG 566 (712)
Q Consensus 501 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 566 (712)
..++|.+.++.+.. .+...|+.-...+...|+ ++++++.++++.+. .| +...|..-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 34566777776652 334456666666666666 88999999999884 45 5577888777888888
Q ss_pred --cHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcC-ChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhc-------
Q 005136 567 --LVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSG-RLSEAEDFINSM-PFEPD-SNAWASLLSGCKTY------- 633 (712)
Q Consensus 567 --~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~------- 633 (712)
+++++++.++++.+. +| |...|+.-..++.+.| .++++++.++++ ...|+ ...|......+...
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 679999999999843 66 7888888888888888 889999998887 55554 66676665554442
Q ss_pred -------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchh
Q 005136 634 -------KNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWID 672 (712)
Q Consensus 634 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 672 (712)
+.++++.+.+++++..+|++..+|..+.+++.+.|++++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999998666
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.12 E-value=2.9e-06 Score=70.46 Aligned_cols=74 Identities=14% Similarity=0.075 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-PF-------EPD-SNAW----ASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
...|..++.++.+.|++++|+..+++. .. .|+ ...| .....++...|++++|+..|++++++.|++.
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 347788888888888888888877765 34 776 5567 7888889999999999999999999999987
Q ss_pred chHHHHH
Q 005136 655 AGYVLLS 661 (712)
Q Consensus 655 ~~~~~l~ 661 (712)
.++..+.
T Consensus 137 ~~~~~~~ 143 (159)
T 2hr2_A 137 GETPGKE 143 (159)
T ss_dssp SCCTTHH
T ss_pred HHHHHHH
Confidence 7655444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1e-05 Score=62.58 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 619 DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 619 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
+...+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|++.+++.++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46677788888889999999999999999999999999999999999999999999999888764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00026 Score=67.49 Aligned_cols=192 Identities=10% Similarity=0.051 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC--ChHHHHHHhccCC---CCCcchHHHHHHHHHHcCC-hHHHHHHH
Q 005136 467 LEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSG--DIESSRRVFDRMP---DKNEISWTVMVRGLAESGY-AKESINLF 540 (712)
Q Consensus 467 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~A~~~~ 540 (712)
++++..++..+.... +-+..++..-..++.+.| .++++..+++.+. ..|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 466777777776653 445666666566666666 4788888888876 3466677777777777787 58999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHhccc--------------CcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhc---
Q 005136 541 EEMEKTSITP-NELTILSVLFACSHS--------------GLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRS--- 601 (712)
Q Consensus 541 ~~~~~~~~~p-~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--- 601 (712)
+++++. .| |...|+.....+.+. +.++++++.++.... ..| |...|+.+-..+.+.
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCc
Confidence 999984 44 445565554444333 457889999988873 367 777777666555554
Q ss_pred --------CChHHHHHHHHhC-CCCCCHHHHHHHHH-----HHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 602 --------GRLSEAEDFINSM-PFEPDSNAWASLLS-----GCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 602 --------g~~~~A~~~~~~~-~~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
+.++++++.++++ ...|+. .|..+.. .....|..++....+.++.+++|.....|..+...+.
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 4578888888887 556663 2322211 1224678889999999999999998888877765543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.8e-05 Score=79.43 Aligned_cols=159 Identities=10% Similarity=-0.032 Sum_probs=119.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc
Q 005136 524 VRGLAESGYAKESINLFEEMEKTSITPNE----------------LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN 587 (712)
Q Consensus 524 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 587 (712)
...+...|++++|++.|.++.+....... ..+..+...|...|++++|.+.+..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567788889999988888874221111 23678889999999999999999988744333332
Q ss_pred h----HHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccC-----
Q 005136 588 G----RHYTCVVDMLSRSGRLSEAEDFINSM-------PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLA----- 650 (712)
Q Consensus 588 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 650 (712)
. .+.+.+...+...|++++|..+++.. ...+. ...+..+...+...|++++|...++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23455666777889999999988765 22233 5667788888999999999999999987642
Q ss_pred -CCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 651 -EEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 651 -p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
|....++..++.+|...|++++|..++++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22346899999999999999999999998875
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.7e-06 Score=81.49 Aligned_cols=151 Identities=12% Similarity=0.023 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC
Q 005136 487 FLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSG 566 (712)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 566 (712)
..+..+...+.+.|++++|...|++....++... .+...++.+++...+. ...|..+..++.+.|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g 244 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHcC
Confidence 3466778888899999999999998663222111 1122233333332221 136777888888999
Q ss_pred cHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHH-HhhcCCHHHHHHH
Q 005136 567 LVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDS-NAWASLLSG-CKTYKNEQIAERA 642 (712)
Q Consensus 567 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~g~~~~a~~~ 642 (712)
++++|+..++++.+. .| +...+..++.+|...|++++|...|++. ...|+. ..+..+... ....+..+.+...
T Consensus 245 ~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 245 RYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp CCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988733 56 6788899999999999999999999987 556653 333444433 3456677888899
Q ss_pred HHHHhccCCCCCc
Q 005136 643 VKNLWKLAEEHPA 655 (712)
Q Consensus 643 ~~~~~~~~p~~~~ 655 (712)
+++++...|+++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999999888653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.6e-05 Score=59.99 Aligned_cols=72 Identities=11% Similarity=0.039 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHhhcCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCc
Q 005136 618 PDSNAWASLLSGCKTYKN---EQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGG 690 (712)
Q Consensus 618 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~ 690 (712)
+++..+..+..++...++ .++|..+++++++.+|+++.+...||..+.+.|++++|+.+|+++++..+. .|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 456677777777543433 799999999999999999999999999999999999999999999998766 543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.9e-06 Score=71.37 Aligned_cols=97 Identities=11% Similarity=0.013 Sum_probs=60.8
Q ss_pred ccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 005136 564 HSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERA 642 (712)
Q Consensus 564 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 642 (712)
+.+.+++|++.++...+ +.| +...+..++.++...++++.+...+ +.+++|+..
T Consensus 14 r~~~feeA~~~~~~Ai~---l~P~~aea~~n~G~~l~~l~~~~~g~~al----------------------~~~~eAi~~ 68 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAK----------------------QMIQEAITK 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHH----------------------HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHhcccchhhhhH----------------------hHHHHHHHH
Confidence 44556666666666652 255 5666666666666665544222211 125677777
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcC-----------CchhHHHHHHHHHhCCC
Q 005136 643 VKNLWKLAEEHPAGYVLLSNIYASAG-----------RWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 643 ~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~eA~~~~~~~~~~~~ 685 (712)
++++++++|+++.+|+.||.+|...| ++++|++.|++.++.++
T Consensus 69 le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 69 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 77777777777777777777777664 67777777777776543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-05 Score=64.47 Aligned_cols=63 Identities=8% Similarity=-0.047 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 620 SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 620 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
...+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|+..+++.++
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444455555555555555555555555555555555555555555555555555544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.01 E-value=1e-05 Score=82.77 Aligned_cols=117 Identities=9% Similarity=-0.029 Sum_probs=91.9
Q ss_pred CcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----------------HHHHHHHH
Q 005136 566 GLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD----------------SNAWASLL 627 (712)
Q Consensus 566 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l~ 627 (712)
+++++|+..|+.... ..| ....+..++..|.+.|++++|+..|++. ...|+ ...+..+.
T Consensus 248 ~~~~~A~~~~~~~~~---~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTK---EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHH---HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 344445544444331 133 4556777788888888888888888776 22222 47788888
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 628 SGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 628 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
.+|...|++++|+..++++++++|+++.+++.++.+|...|++++|+..++++++..+
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999999999999999999999999999999999988654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.00 E-value=2.4e-05 Score=59.22 Aligned_cols=82 Identities=15% Similarity=0.221 Sum_probs=63.2
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+...+..++..+...|++++|...+++. ...| +...+..+...+...|++++|...++++++.+|+++.++..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4556777788888888888888888776 2233 4666777777788888888888888888888888888888888887
Q ss_pred HhcC
Q 005136 665 ASAG 668 (712)
Q Consensus 665 ~~~g 668 (712)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.99 E-value=1.3e-05 Score=79.16 Aligned_cols=66 Identities=8% Similarity=-0.081 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 620 SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 620 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
...+..+..+|...|++++|+..++++++++|+++.++..++.+|...|++++|++.+++.++..+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 566788888899999999999999999999999999999999999999999999999999988654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.9e-05 Score=66.37 Aligned_cols=133 Identities=10% Similarity=0.019 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC----chH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSIT-PNE----LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP----NGR 589 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~ 589 (712)
++..+...+...|++++|+..+++..+.... ++. ..+..+...+...|++++|...+++......-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3555666777777777777777776552111 111 3566677777788888888888877653211111 244
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 005136 590 HYTCVVDMLSRSGRLSEAEDFINSMP----FEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 651 (712)
.+..++.++...|++++|...+++.- ..++ ...+..+...+...|++++|...+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 67778888888999999888887751 1112 34456677778899999999999999887643
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.97 E-value=2.7e-05 Score=80.00 Aligned_cols=114 Identities=11% Similarity=0.012 Sum_probs=63.4
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCC
Q 005136 526 GLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGR 603 (712)
Q Consensus 526 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 603 (712)
.+...|++++|++.+++..+. .| +...+..+..++.+.|++++|++.++++.+ +.| +...+..++.+|.+.|+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCC
Confidence 344556666666666666663 34 345566666666666677777666666652 244 45666666666767777
Q ss_pred hHHHHHHHHhC-CCCCC-HHHHHHHHHH--HhhcCCHHHHHHHHH
Q 005136 604 LSEAEDFINSM-PFEPD-SNAWASLLSG--CKTYKNEQIAERAVK 644 (712)
Q Consensus 604 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~--~~~~g~~~~a~~~~~ 644 (712)
+++|.+.+++. ...|+ ...+..+..+ +...|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777666665 22222 2223333333 556667777777666
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=8.4e-05 Score=61.42 Aligned_cols=112 Identities=11% Similarity=0.014 Sum_probs=72.8
Q ss_pred cHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHH
Q 005136 567 LVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKT----YKNEQIAERA 642 (712)
Q Consensus 567 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 642 (712)
++++|++.|++..+. + .|. .. |+..|...+..++|.++|++.-...+......+...|.. .++.++|..+
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455566666555521 2 122 22 555565555666666666665333455555556555555 6778888888
Q ss_pred HHHHhccCCCCCchHHHHHHHHHh----cCCchhHHHHHHHHHhCCCc
Q 005136 643 VKNLWKLAEEHPAGYVLLSNIYAS----AGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 643 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~ 686 (712)
++++.+. .++.++..|+.+|.. .+++++|++++++..+.|.+
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 8888765 567788888888888 78888888888888877643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.87 E-value=6.2e-05 Score=76.72 Aligned_cols=122 Identities=11% Similarity=0.020 Sum_probs=90.6
Q ss_pred hcccCcHHHHHHHHHhcchhc-----CCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC---------CCCCC-HHHHHH
Q 005136 562 CSHSGLVDKGLKYFNSMEPIY-----NIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM---------PFEPD-SNAWAS 625 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 625 (712)
+...|++++|+.++++..... .-+| ...+++.|+.+|...|++++|..++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445677777777666554221 1233 3557888899999999999998888775 12333 555788
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhc-----cCCCCCch---HHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 626 LLSGCKTYKNEQIAERAVKNLWK-----LAEEHPAG---YVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 626 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
+...|..+|++++|+.+++++++ +.|++|.+ ...|..++..+|++.+|...+.++.++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999986 35777654 457777888999999999999999874
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.85 E-value=4e-05 Score=60.58 Aligned_cols=68 Identities=10% Similarity=0.004 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 619 DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 619 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
+...+..+...+...|++++|+..++++++..|+++.++..++.++.+.|++++|++.+++.++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 45667778888999999999999999999999999999999999999999999999999999986543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00024 Score=74.42 Aligned_cols=153 Identities=9% Similarity=0.039 Sum_probs=124.7
Q ss_pred HcC-ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCc----------HHHHHHHHHhcchhcCCCC-chHHHHHHH
Q 005136 529 ESG-YAKESINLFEEMEKTSITPNE-LTILSVLFACSHSGL----------VDKGLKYFNSMEPIYNIKP-NGRHYTCVV 595 (712)
Q Consensus 529 ~~~-~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 595 (712)
+.| ..++|++.+++++. +.|+. ..|+.--.++...|+ +++++++++.+... .| +..+|..-.
T Consensus 40 ~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~ 114 (567)
T 1dce_A 40 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRC 114 (567)
T ss_dssp HTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 344 45788999999999 56765 456655555656666 89999999999843 67 788999999
Q ss_pred HHhhhcC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC-CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc---
Q 005136 596 DMLSRSG--RLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYK-NEQIAERAVKNLWKLAEEHPAGYVLLSNIYASA--- 667 (712)
Q Consensus 596 ~~~~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--- 667 (712)
.++.+.| +++++++.++++ ...| +...|..-..+....| .++++.+.++++++.+|.+..+|...+.++.+.
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence 9999999 779999999998 4444 5777877777777888 899999999999999999999999999998874
Q ss_pred -----------CCchhHHHHHHHHHhCCCc
Q 005136 668 -----------GRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 668 -----------g~~~eA~~~~~~~~~~~~~ 686 (712)
+++++|++++++.++..+.
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCC
Confidence 5678999999998876543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=2.6e-05 Score=64.52 Aligned_cols=103 Identities=12% Similarity=0.068 Sum_probs=80.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcH----------HHHHHHHHhcchhcCCCC-chHHHHHH
Q 005136 527 LAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLV----------DKGLKYFNSMEPIYNIKP-NGRHYTCV 594 (712)
Q Consensus 527 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~p-~~~~~~~l 594 (712)
..+.+.+++|++.+++..+ +.| +...|..+..++...+++ ++|+..|++.. .+.| +...|..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL---~ldP~~~~A~~~L 86 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---LIDPKKDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH---HhCcCcHHHHHHH
Confidence 4567789999999999998 456 557788788888888764 58888888887 4477 67788888
Q ss_pred HHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 595 VDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
+.+|...|++ .|+... ..|++++|++.++++++++|++..
T Consensus 87 G~ay~~lg~l------------~P~~~~---------a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 87 GNAYTSFAFL------------TPDETE---------AKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHH------------CCCHHH---------HHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhccc------------Ccchhh---------hhccHHHHHHHHHHHHHhCCCCHH
Confidence 8888877654 454321 247899999999999999999753
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00011 Score=55.46 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 620 SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 620 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
...+..+...+...|++++|+..++++++..|+++.++..++.++...|++++|+..+++.++..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 456677777899999999999999999999999999999999999999999999999999988653
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.71 E-value=3.5e-07 Score=88.23 Aligned_cols=263 Identities=11% Similarity=0.096 Sum_probs=174.5
Q ss_pred hhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc
Q 005136 118 EVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEI 197 (712)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 197 (712)
+..|+.|..+..+.|++.+|+..|-+ ..|...|..+|.+..+.|.+++-+..+...++..-.|. .=+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHhh
Confidence 44566777777777777777665543 34666778888888888999988888887776543343 334788888888
Q ss_pred cchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005136 198 NDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMP 277 (712)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 277 (712)
++..+..+++. .|+..-...+.+-|...|.++.|.-+|..+. .|..|..++.+.|++..|.+.-++
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVdaArK-- 195 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARK-- 195 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTTTTT--
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 87766555442 4666666778888888888888888887554 344444555566666665543222
Q ss_pred CCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHH
Q 005136 278 ERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNAL 357 (712)
Q Consensus 278 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 357 (712)
..++.+|..+..+|...+++.-|.-.=-.++- .|| ....++..|-..|.+++.+.+++.-... -.....+++-|
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTEL 269 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTEL 269 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHH
Confidence 25778999999999999998877654433332 111 1234666778889999888888776532 13466788888
Q ss_pred HHHHHhcCChHHHHHHHHhhhc-CCCC-------ceeeHHHHHHHHhccCChhhHH
Q 005136 358 IDLYSKCGETKDGRLVFDSIVE-KDVA-------HVVSWNSMIGGYGLNGQMEEAK 405 (712)
Q Consensus 358 ~~~~~~~g~~~~A~~~~~~~~~-~~~~-------~~~~~~~l~~~~~~~~~~~~a~ 405 (712)
.-.|++- +.++..+.++-.-. .++| ....|.-++-.|.+-.+++.|.
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 8888876 44555444443322 2222 4556777777777777777663
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.71 E-value=2.3e-05 Score=75.96 Aligned_cols=235 Identities=11% Similarity=0.060 Sum_probs=155.2
Q ss_pred hhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcCC--CCcchHHHHHHHHHh
Q 005136 22 ETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNG--FDLVVHNCMINANIQ 99 (712)
Q Consensus 22 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~ 99 (712)
..|..|.++..+.++..+|.+-| ++++ |+..+..++....+.|++++-...+.-.++ .++.+-+.|+-+|++
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy---IkA~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY---IKAD---DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 128 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS---CCCS---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHT
T ss_pred cHHHHHHHHHHccCchHHHHHHH---HhCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHh
Confidence 35667777777777777776665 3333 666677788888888888877777765533 555667778888888
Q ss_pred cCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCC------------------------CCCcccHHHH
Q 005136 100 WGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNP------------------------FQNVISWTAA 155 (712)
Q Consensus 100 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------------------------~~~~~~~~~l 155 (712)
.+++.+-.+++. .+|..-...+++-|...|.++.|.-+|..+. ..++.+|-.+
T Consensus 129 ~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV 205 (624)
T 3lvg_A 129 TNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEV 205 (624)
T ss_dssp SCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHH
T ss_pred hCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 877665543332 3566666667777778888888777775432 1366788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCCh
Q 005136 156 ICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEV 235 (712)
Q Consensus 156 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 235 (712)
-.+|...+.+.-|--.--.++- .|+ .+..++.-|-..|.+++...+++..+.. -.....+|+-|.-.|++- +.
T Consensus 206 ~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 206 CFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp THHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CT
T ss_pred HHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CH
Confidence 8888888888777655444442 222 2334566677788888888888776532 245667888888888765 34
Q ss_pred HHHHHHHhhcCC-----------CCcchHHHHHHHHHhcCCHHHHHHH
Q 005136 236 DLARSVFDRMEK-----------RDVVSWTVILDVFIEMGDLGEARRI 272 (712)
Q Consensus 236 ~~a~~~~~~~~~-----------~~~~~~~~ll~~~~~~~~~~~a~~~ 272 (712)
++..+.++..-. .....|..++-.|..-.+++.|...
T Consensus 279 eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 455554443322 2445677777777777777766543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00083 Score=55.32 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=92.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhh----cCChH
Q 005136 530 SGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSR----SGRLS 605 (712)
Q Consensus 530 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 605 (712)
.+++++|++.|++..+.| .|+.. +...|...+.+++|.+.|++..+. -++.....|+.+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346889999999999977 44433 777788888899999999998732 477888899999988 88999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccC
Q 005136 606 EAEDFINSMPFEPDSNAWASLLSGCKT----YKNEQIAERAVKNLWKLA 650 (712)
Q Consensus 606 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 650 (712)
+|..+|++.-...++.....+...|.. .++.++|..+++++.+..
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999999998445677788888888887 899999999999998864
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00022 Score=56.70 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=57.3
Q ss_pred HHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 005136 571 GLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLW 647 (712)
Q Consensus 571 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 647 (712)
|+..|++.. ...| +...+..++.+|...|++++|+..+++. ...| +...+..+..++...|++++|...+++++
T Consensus 4 a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455566555 2345 5677777888888888888888888776 3334 36667777777888888888888888888
Q ss_pred ccCCCC
Q 005136 648 KLAEEH 653 (712)
Q Consensus 648 ~~~p~~ 653 (712)
+..|++
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 877653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00017 Score=55.45 Aligned_cols=82 Identities=16% Similarity=0.125 Sum_probs=60.3
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCCC-HH-HHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 005136 593 CVVDMLSRSGRLSEAEDFINSM-PFEPD-SN-AWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGR 669 (712)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 669 (712)
..+..+.+.|++++|...+++. ...|+ .. .+..+..++...|++++|+..++++++.+|+++.++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 3566778888899998888887 33443 55 77777777888899999999999999888888876633 44
Q ss_pred chhHHHHHHHHHh
Q 005136 670 WIDAMNVRKLMTE 682 (712)
Q Consensus 670 ~~eA~~~~~~~~~ 682 (712)
+.+|...+++..+
T Consensus 77 ~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 77 VMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHCCTTH
T ss_pred HHHHHHHHHHHhc
Confidence 5666666655443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0001 Score=56.75 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=37.4
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCCc-hHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 628 SGCKTYKNEQIAERAVKNLWKLAEEHPA-GYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 628 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
..+...|++++|+..++++++.+|+++. ++..++.+|...|++++|++.+++.++.++
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3455666666666666666666666666 666666666666666666666666665443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0026 Score=58.06 Aligned_cols=88 Identities=10% Similarity=0.059 Sum_probs=71.1
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHhh-----cCCHHHHHHHHHHHhccCCCC-CchHHHHHHHHHhc-CCchh
Q 005136 604 LSEAEDFINSM-PFEPD---SNAWASLLSGCKT-----YKNEQIAERAVKNLWKLAEEH-PAGYVLLSNIYASA-GRWID 672 (712)
Q Consensus 604 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~e 672 (712)
..+|...+++. .+.|+ ...+..+...|.. -|+.++|++.+++++++.|+. ..+++.++..++.. |++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45677777776 56777 4456666666766 499999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCccCCcc
Q 005136 673 AMNVRKLMTEKGLRKSGGC 691 (712)
Q Consensus 673 A~~~~~~~~~~~~~~~~~~ 691 (712)
|.+++++.+...+...|+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 9999999999877754553
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00025 Score=54.62 Aligned_cols=66 Identities=12% Similarity=0.059 Sum_probs=48.6
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
+...+..++.+|...|++++|+..|++. ...|+ ...|..+..+|...|++++|+..+++++++.|.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 5667777888888888888888888776 33343 556777777788888888888888888776554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00049 Score=68.86 Aligned_cols=62 Identities=10% Similarity=0.010 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhcc-----CCCCC---chHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 621 NAWASLLSGCKTYKNEQIAERAVKNLWKL-----AEEHP---AGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 621 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
.+++.+..+|...|++++|+.+++++++. .|++| ..++.||.+|..+|++++|+.++++.++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 33445555555555555555555555442 23333 3455566666666666666666665544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0014 Score=66.79 Aligned_cols=129 Identities=8% Similarity=-0.039 Sum_probs=71.7
Q ss_pred HhccCChhhHHHHHHHHHHc-----CC-CC-cHHHHHHHHHHHHhcCChHHHHHHHHhhhcC-----C--CC-ceeeHHH
Q 005136 326 LASLKALRSGMHVHAHVLKI-----GI-EK-DVFISNALIDLYSKCGETKDGRLVFDSIVEK-----D--VA-HVVSWNS 390 (712)
Q Consensus 326 ~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~-~~~~~~~ 390 (712)
+...|++++|..+++..++. |. .| ...+++.|..+|...|++++|..++++..+. + .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667777777777776653 11 11 2456777777888888888887777665431 1 11 2334555
Q ss_pred HHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCchHH
Q 005136 391 MIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNK-STFSSVLCASASVASLEK 469 (712)
Q Consensus 391 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~ll~~~~~~~~~~~ 469 (712)
|...|...|++++|+.++++. +.+++...... .|+. .+...+-.++...+.+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~A------------------------l~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKA------------------------YAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------------------------HHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH------------------------HHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554444332 33333332222 2333 334445556667777777
Q ss_pred HHHHHHHHHH
Q 005136 470 GKDLHGKIIK 479 (712)
Q Consensus 470 a~~~~~~~~~ 479 (712)
|+.++..+++
T Consensus 454 ae~~~~~~~~ 463 (490)
T 3n71_A 454 NEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777765
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.041 Score=42.97 Aligned_cols=142 Identities=13% Similarity=0.082 Sum_probs=97.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHH
Q 005136 527 LAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSE 606 (712)
Q Consensus 527 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 606 (712)
+.-.|..++..++..+..+. .+..-++.++--....-+-+-..+.++.+-.-+.+ ..+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 45678888889988888763 23333444443333344555556666655422222 24555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 607 AEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 607 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
....+-.+. .+.......+.....+|+.++..+++..++.-.|-+|+++..++.+|.+.|+..+|.+++.+.=++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555555543 233445556667778999999999999987777777999999999999999999999999999999975
Q ss_pred c
Q 005136 687 K 687 (712)
Q Consensus 687 ~ 687 (712)
.
T Consensus 158 E 158 (172)
T 1wy6_A 158 E 158 (172)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0037 Score=59.77 Aligned_cols=68 Identities=15% Similarity=0.036 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 617 EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 617 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
..++..+..+...+...|++++|...+++++.++|+ ...|..+++++.-.|++++|.+.+++....++
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 345666666666666678888888888888888864 56777888888888888888888888877554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0067 Score=58.01 Aligned_cols=137 Identities=11% Similarity=-0.028 Sum_probs=90.2
Q ss_pred CCcchHHHHHHHHH--HcC---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcc----c----CcHHHHHHHHHhcch
Q 005136 515 KNEISWTVMVRGLA--ESG---YAKESINLFEEMEKTSITPNE-LTILSVLFACSH----S----GLVDKGLKYFNSMEP 580 (712)
Q Consensus 515 ~~~~~~~~l~~~~~--~~~---~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~----~----g~~~~a~~~~~~~~~ 580 (712)
.+...|...+.+.. ..+ +..+|+.+|++.++ +.|+. ..+..+..+|.. . .........++...
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~- 268 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV- 268 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH-
Confidence 45556666655433 223 34678888888888 56764 344443333321 0 01111111222211
Q ss_pred hcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 581 IYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 581 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
.....| ++..+..++..+...|++++|...++++ ...|+...+..+...+...|+.++|.+.+++++.++|..+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 112234 7788888888888889999999999998 4568887777777778999999999999999999999864
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0016 Score=65.40 Aligned_cols=85 Identities=11% Similarity=0.091 Sum_probs=46.4
Q ss_pred hhhcCChHHHHHHHHhC-C-----CCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhcc-----CCCCC---chHHH
Q 005136 598 LSRSGRLSEAEDFINSM-P-----FEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKL-----AEEHP---AGYVL 659 (712)
Q Consensus 598 ~~~~g~~~~A~~~~~~~-~-----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~ 659 (712)
+.+.|++++|..++++. . ..|+ ..+++.++.+|...|++++|+.+++++++. .|++| ..++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 33455666666655543 0 1122 334455555566666666666666666542 23333 34556
Q ss_pred HHHHHHhcCCchhHHHHHHHHHh
Q 005136 660 LSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 660 l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
|+.+|..+|++++|+.++++.++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 66666666666666666666554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0013 Score=53.66 Aligned_cols=89 Identities=16% Similarity=0.041 Sum_probs=67.9
Q ss_pred cCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHhhcCCHH
Q 005136 565 SGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSG---RLSEAEDFINSM-PFE-P--DSNAWASLLSGCKTYKNEQ 637 (712)
Q Consensus 565 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~ 637 (712)
.+....+.+.|.+.... + .++..+...++.++++.+ +.++++.+++.. ... | ....+-.+.-+|.+.|+++
T Consensus 11 ~~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH
Confidence 34566777777766522 2 368888889999999988 566899999887 333 5 2455666666789999999
Q ss_pred HHHHHHHHHhccCCCCCc
Q 005136 638 IAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 638 ~a~~~~~~~~~~~p~~~~ 655 (712)
+|.++++++++.+|+|..
T Consensus 89 ~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhcCCCCHH
Confidence 999999999999999754
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0029 Score=63.28 Aligned_cols=94 Identities=11% Similarity=0.048 Sum_probs=65.8
Q ss_pred cCcHHHHHHHHHhcchhc-----CCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 005136 565 SGLVDKGLKYFNSMEPIY-----NIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM---------PFEPD-SNAWASLLS 628 (712)
Q Consensus 565 ~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~ 628 (712)
.|++++|+.++++..... .-+| ...+++.|+.+|...|++++|..++++. +..|+ ..+++.+..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666666666554211 1223 2457788888999999999998888875 12333 555788888
Q ss_pred HHhhcCCHHHHHHHHHHHhcc-----CCCCCchHH
Q 005136 629 GCKTYKNEQIAERAVKNLWKL-----AEEHPAGYV 658 (712)
Q Consensus 629 ~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~~ 658 (712)
.|..+|++++|+.++++++++ .|++|.+-.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 899999999999999999773 577775443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0066 Score=46.82 Aligned_cols=75 Identities=12% Similarity=-0.007 Sum_probs=58.1
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-----P----FEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGY 657 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 657 (712)
+..-...|+..+.+.|++..|..+++.. . ..+....+..+..++.+.|+++.|...+++++++.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4455567788888888888888887765 1 123467778888889999999999999999999999998776
Q ss_pred HHHH
Q 005136 658 VLLS 661 (712)
Q Consensus 658 ~~l~ 661 (712)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0061 Score=61.10 Aligned_cols=99 Identities=12% Similarity=-0.026 Sum_probs=69.6
Q ss_pred HhcccCcHHHHHHHHHhcchhc--CCCC----chHHHHHHHHHhhhcCChHHHHHHHHhC---------CCCCC-HHHHH
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIY--NIKP----NGRHYTCVVDMLSRSGRLSEAEDFINSM---------PFEPD-SNAWA 624 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 624 (712)
.+...|++++|+.++++..... -+.| ...+++.++.+|...|++++|+.++++. +..|+ ..++.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445667777777777664221 1222 2457788888898999999998888865 12333 45577
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhc-----cCCCCCchHHH
Q 005136 625 SLLSGCKTYKNEQIAERAVKNLWK-----LAEEHPAGYVL 659 (712)
Q Consensus 625 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~ 659 (712)
.+...|..+|++++|+.+++++++ +.|++|.+-..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 888889999999999999999977 36787765544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.058 Score=59.83 Aligned_cols=151 Identities=13% Similarity=0.026 Sum_probs=85.6
Q ss_pred HhcCCChhHhHH-HHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhC
Q 005136 66 YLGSRKSLEANE-IVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERN 144 (712)
Q Consensus 66 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 144 (712)
....++++.|.+ ++..++. ......++..+.+.|.++.|..+.+. . ..-.......|++++|.++...+
T Consensus 609 ~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~~ 678 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTDE 678 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHhh
Confidence 345677777766 4433220 11225666666677777777665531 1 11133445677777777777665
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHH
Q 005136 145 PFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNS 224 (712)
Q Consensus 145 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (712)
. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...++.+.....| -++.
T Consensus 679 ~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~ 741 (814)
T 3mkq_A 679 S--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNL 741 (814)
T ss_dssp C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHH
T ss_pred C--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHH
Confidence 4 446777788888888888888888777642 2233344444556555555544444433 2233
Q ss_pred HHHHHHccCChHHHHHHHh
Q 005136 225 LITLSLKMGEVDLARSVFD 243 (712)
Q Consensus 225 li~~~~~~~~~~~a~~~~~ 243 (712)
...++.+.|++++|.+++.
T Consensus 742 A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 742 AFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3344555566666666554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0075 Score=46.48 Aligned_cols=67 Identities=13% Similarity=-0.044 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC-------CCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 619 DSNAWASLLSGCKTYKNEQIAERAVKNLWKLA-------EEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 619 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
+......+...+...|+++.|..+++++++.. +..+.++..|+.++.+.|++++|+.+++++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34455667778899999999999999998853 23467899999999999999999999999987544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.036 Score=61.56 Aligned_cols=188 Identities=10% Similarity=0.073 Sum_probs=103.8
Q ss_pred HHHhcCChhHHHH-HHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChH
Q 005136 425 GYLEHKQFDLVFA-VFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIE 503 (712)
Q Consensus 425 ~~~~~~~~~~a~~-~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 503 (712)
.....+++++|.+ ++.. + |+......++..+.+.|.++.|.++.+.- ..-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHH
Confidence 3345666766655 4311 1 11222255666666777777776654211 11133456778999
Q ss_pred HHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcC
Q 005136 504 SSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYN 583 (712)
Q Consensus 504 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 583 (712)
+|.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++-+..... +
T Consensus 670 ~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~ 737 (814)
T 3mkq_A 670 LARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G 737 (814)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C
Confidence 9988887764 557888899999999999999888887643 333444444455555544443333310 1
Q ss_pred CCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC---CchHHHH
Q 005136 584 IKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH---PAGYVLL 660 (712)
Q Consensus 584 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 660 (712)
-++.-..+|.+.|++++|++++.+ .+++++|..+.++ ..|.. +.+...+
T Consensus 738 ------~~~~A~~~~~~~g~~~~a~~~~~~-------------------~~~~~~A~~lA~~---~~~~~~~i~~~~~~~ 789 (814)
T 3mkq_A 738 ------KFNLAFNAYWIAGDIQGAKDLLIK-------------------SQRFSEAAFLGST---YGLGDNEVNDIVTKW 789 (814)
T ss_dssp ------CHHHHHHHHHHHTCHHHHHHHHHH-------------------TTCHHHHHHHHHH---TTCCHHHHHHHHHHH
T ss_pred ------chHHHHHHHHHcCCHHHHHHHHHH-------------------cCChHHHHHHHHH---hCCChHHHHHHHHHH
Confidence 112223334455666655555554 4466666665554 22221 2344445
Q ss_pred HHHHHhcCCc
Q 005136 661 SNIYASAGRW 670 (712)
Q Consensus 661 ~~~~~~~g~~ 670 (712)
...+...|+.
T Consensus 790 ~~~L~~~~~~ 799 (814)
T 3mkq_A 790 KENLILNGKN 799 (814)
T ss_dssp HHHHHTTTCH
T ss_pred HHHHHhccch
Confidence 5555556653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0084 Score=48.96 Aligned_cols=67 Identities=7% Similarity=-0.079 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHhhcC---CHHHHHHHHHHHhccC-C-CCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 618 PDSNAWASLLSGCKTYK---NEQIAERAVKNLWKLA-E-EHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 618 p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
++..+...+.+++.+.+ +.++++.+++.+++.+ | ++.+.++.|+..+.+.|++++|+++++++++..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 56666666666666666 5557777777776666 5 346667777777777777777777777666543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.6 Score=48.79 Aligned_cols=263 Identities=12% Similarity=0.055 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHh-cCC
Q 005136 353 ISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLE-HKQ 431 (712)
Q Consensus 353 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 431 (712)
.-...+..+.+.+++.....++.. .+.+...-.....+....|+..+|......+ ... ...
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~l--------------W~~~~~~ 135 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL--------------WLTGKSQ 135 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------HSCSSCC
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH--------------HhCCCCC
Confidence 334555666667776665554432 1233444455566666677765553322211 110 112
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchh-hHHHHHHHHHhcCChHHHHHHhc
Q 005136 432 FDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVF-LGTALTDTYAKSGDIESSRRVFD 510 (712)
Q Consensus 432 ~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 510 (712)
.+.+..+|..+.+.|.......+..+ ......|+...|..+...+ +++.. ....++..+. +...+.....
T Consensus 136 p~~c~~l~~~~~~~g~lt~~~~~~R~-~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~---~p~~~~~~~~ 206 (618)
T 1qsa_A 136 PNACDKLFSVWRASGKQDPLAYLERI-RLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLAN---NPNTVLTFAR 206 (618)
T ss_dssp CTHHHHHHHHHHHTTCSCHHHHHHHH-HHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHH---CGGGHHHHHH
T ss_pred cHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHh---ChHhHHHHHh
Confidence 33334555555554433222222222 2333445555555544322 22221 2222332222 2333333333
Q ss_pred cCCCCCcc---hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHhcccCcHHHHHHHHHhcchhcC
Q 005136 511 RMPDKNEI---SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELT----ILSVLFACSHSGLVDKGLKYFNSMEPIYN 583 (712)
Q Consensus 511 ~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 583 (712)
.. .++.. .+...+.-+. ..+.+.|...+......+ ..+... ...+.......+...++...+......
T Consensus 207 ~~-~~~~~~~~~~~~~~~rla-r~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~-- 281 (618)
T 1qsa_A 207 TT-GATDFTRQMAAVAFASVA-RQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-- 281 (618)
T ss_dssp HS-CCCHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--
T ss_pred cc-CCChhhHHHHHHHHHHHH-hcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--
Confidence 32 22221 1111222223 337788888888876543 223222 223333444555355556666554311
Q ss_pred CCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 005136 584 IKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEP--DSNAWASLLSGCKTYKNEQIAERAVKNLWK 648 (712)
Q Consensus 584 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 648 (712)
.++.....-.+....+.|+++.|...|+.|+..+ ...-.--+..++...|+.++|..+++++.+
T Consensus 282 -~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 282 -SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp -CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2333334444445557788988888888885432 233233344456678888888888888865
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.012 Score=44.03 Aligned_cols=70 Identities=11% Similarity=-0.011 Sum_probs=52.0
Q ss_pred CchHHHHHHHHHhhhcCC---hHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 586 PNGRHYTCVVDMLSRSGR---LSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 586 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
+++..+..++.++...++ .++|..++++. ...|+ ...+..+...+...|++++|+..|+++++.+|+++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 367777788887764443 68888888887 44555 555666666688899999999999999988888443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.32 E-value=1.6 Score=47.41 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 005136 152 WTAAICGFVQNGFSFEALKLFLKL 175 (712)
Q Consensus 152 ~~~li~~~~~~g~~~~A~~~~~~m 175 (712)
...++.-|.+.|.+.+|+.+.-+.
T Consensus 148 v~~iv~~cl~hnae~~AvdLalE~ 171 (963)
T 4ady_A 148 FERMIEKCLKASELKLALGIALEG 171 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 455666666777777776665544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.021 Score=45.76 Aligned_cols=51 Identities=10% Similarity=0.042 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 634 KNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 634 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
+|.++|.++|+.++++....+-++...+.--.++|+...|++++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 455555555555544433333344444444445555555555555544433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.01 Score=54.19 Aligned_cols=105 Identities=10% Similarity=0.145 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcchhcCCCCc---hHHHHHHHHHhhh-----cCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHhh-cCC
Q 005136 568 VDKGLKYFNSMEPIYNIKPN---GRHYTCVVDMLSR-----SGRLSEAEDFINSM-PFEPD--SNAWASLLSGCKT-YKN 635 (712)
Q Consensus 568 ~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~g~ 635 (712)
...|...+++.. .+.|+ ...+..++..|.. -|+.++|.+.|++. .+.|+ ..+.......++. .|+
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 445555555555 33554 4466777777776 47888888888776 45553 5555555665555 488
Q ss_pred HHHHHHHHHHHhccCCCC-CchHHHHHHHHHhcCCchhHHHHHHHHH
Q 005136 636 EQIAERAVKNLWKLAEEH-PAGYVLLSNIYASAGRWIDAMNVRKLMT 681 (712)
Q Consensus 636 ~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 681 (712)
.+++.+.++++++..|.. |. +.+...+..++|..+++++.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~------~~lan~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH------NKLLVILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS------CHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC------hhHHHHHHHHHHHHHHHHhH
Confidence 888888888888877663 33 12233344556666665543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.19 Score=42.23 Aligned_cols=45 Identities=11% Similarity=0.362 Sum_probs=23.9
Q ss_pred HhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 005136 497 AKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEM 543 (712)
Q Consensus 497 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 543 (712)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 4455555555555443 23445555555555555555555555543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.096 Score=41.02 Aligned_cols=90 Identities=14% Similarity=0.013 Sum_probs=59.2
Q ss_pred cHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHhhcCCHHHH
Q 005136 567 LVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSE---AEDFINSM-PFE-P--DSNAWASLLSGCKTYKNEQIA 639 (712)
Q Consensus 567 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a 639 (712)
....+.+-|.+.... + .|+..+-..++.++++..+..+ ++.+++.+ ... | .....-.+.-++.+.|+++.|
T Consensus 16 ~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 334445555444321 2 2667777778888888776655 77777776 322 4 233344555568899999999
Q ss_pred HHHHHHHhccCCCCCchHH
Q 005136 640 ERAVKNLWKLAEEHPAGYV 658 (712)
Q Consensus 640 ~~~~~~~~~~~p~~~~~~~ 658 (712)
.+.++.+++.+|+|..+..
T Consensus 94 ~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHH
Confidence 9999999999998765433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.042 Score=43.03 Aligned_cols=69 Identities=6% Similarity=-0.100 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHhhcCCHHH---HHHHHHHHhccC-C-CCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 617 EPDSNAWASLLSGCKTYKNEQI---AERAVKNLWKLA-E-EHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 617 ~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
.|+..+-..+.+++.++++... ++.+++.++... | .....++.|+..+.+.|+|++|+++++.+++..+
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 4788888899999888886665 899999998876 5 4678999999999999999999999999998654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.36 Score=40.47 Aligned_cols=128 Identities=10% Similarity=0.042 Sum_probs=84.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCCh
Q 005136 525 RGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRL 604 (712)
Q Consensus 525 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 604 (712)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.. | +..+.-.|.-.|+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D---~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH-------S---FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-------C---HHHHHHHHHHHTCH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-------C---HHHHHHHHHHhCCH
Confidence 4456788999998887765 467789999999999999999999998886 2 33445556667777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh-cCCchhHHHHHHHH
Q 005136 605 SEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYAS-AGRWIDAMNVRKLM 680 (712)
Q Consensus 605 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~eA~~~~~~~ 680 (712)
+.-.++-+....+.+. +.....+.-.|+++++.+++.+.-. ..++....+ -|-.+.|.++.+.+
T Consensus 77 e~L~kla~iA~~~g~~---n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTREDF---GSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTTCH---HHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCccH---HHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 6655554443222222 2333445678999999998876532 123334443 35666677776654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.17 Score=40.37 Aligned_cols=86 Identities=12% Similarity=0.042 Sum_probs=58.4
Q ss_pred cHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChH---HHHHHHHhC-CCCC-C-HHHHHHHHHHHhhcCCHHHHH
Q 005136 567 LVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLS---EAEDFINSM-PFEP-D-SNAWASLLSGCKTYKNEQIAE 640 (712)
Q Consensus 567 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~g~~~~a~ 640 (712)
+.....+-|..-. +-.|+..+--.++.++++..+.+ +++.+++.+ ...| + ...+-.+.-++.+.|++++|.
T Consensus 21 eL~~lr~qY~~E~---~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar 97 (144)
T 1y8m_A 21 QLEILRQQVVSEG---GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAK 97 (144)
T ss_dssp HHHHHHHHHHHTT---STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHhc---cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHH
Confidence 3444444444331 22577888888888888877644 577777776 3344 2 344445555688999999999
Q ss_pred HHHHHHhccCCCCCc
Q 005136 641 RAVKNLWKLAEEHPA 655 (712)
Q Consensus 641 ~~~~~~~~~~p~~~~ 655 (712)
++.+.+++.+|+|..
T Consensus 98 ~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 98 RYVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHHTCCCCHH
T ss_pred HHHHHHHhcCCCcHH
Confidence 999999999998753
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.33 E-value=7.4 Score=42.47 Aligned_cols=51 Identities=12% Similarity=0.170 Sum_probs=27.1
Q ss_pred HHHhcCCHHHHHHHHhhCCCC----Cce--eHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005136 259 VFIEMGDLGEARRIFDEMPER----NEV--SWSVMIARYNQSGYPEEAFRLFRQMTR 309 (712)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~ 309 (712)
+....|+.+++..+++..... +.. .-..+.-+....|...++..++.....
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~ 439 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIV 439 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Confidence 355667777777777766541 111 122233344555555566666666543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.25 E-value=0.092 Score=41.26 Aligned_cols=71 Identities=13% Similarity=0.100 Sum_probs=48.9
Q ss_pred CCchHHHHHHHHHhhhcCCh---HHHHHHHHhC-CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 585 KPNGRHYTCVVDMLSRSGRL---SEAEDFINSM-PFEPD--SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 585 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
.|++.+--.++.++++..+. .+++.+++.+ ...|. ...+-.+.-++.+.|+++.|.++.+.+++..|+|..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 56667777777778777654 3567777666 23342 444555566688888888888888888888888654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.03 E-value=0.91 Score=36.55 Aligned_cols=116 Identities=10% Similarity=0.209 Sum_probs=80.7
Q ss_pred CCCceeHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCHH----HHHHHHHH---HhccCChhhHHHHHHHHHH
Q 005136 278 ERNEVSWSVMIARYNQSGYP------EEAFRLFRQMTRYSFKPNTS----CFSIVLSA---LASLKALRSGMHVHAHVLK 344 (712)
Q Consensus 278 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~----~~~~ll~~---~~~~~~~~~a~~~~~~~~~ 344 (712)
..|..+|-..+...-+.|++ ++..++|++... .++|+.. .|..+.-- +...++.+.|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34666777777777777888 788888888766 4566531 11111111 1233789999999999987
Q ss_pred cCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHH
Q 005136 345 IGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGY 395 (712)
Q Consensus 345 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 395 (712)
.+-. -..+|....+.-.+.|++..|++++......++.+.......++.+
T Consensus 89 ~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl 138 (161)
T 4h7y_A 89 NCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNL 138 (161)
T ss_dssp HCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHH
T ss_pred HhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhh
Confidence 6333 3788888888889999999999999999888865555555555443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=7.9 Score=40.42 Aligned_cols=444 Identities=8% Similarity=-0.003 Sum_probs=215.5
Q ss_pred cCCChhHhHHHHhhcCCCCcc---hHHHHHHHHHhcCChHHHHHHHhhCCCC-C-hhHHHHHHHHHHccCChHHHHHHhh
Q 005136 68 GSRKSLEANEIVKDLNGFDLV---VHNCMINANIQWGNLEEAQRLFDGMPER-N-EVSWTALISGFMKHGRVEESMWYFE 142 (712)
Q Consensus 68 ~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~a~~~~~ 142 (712)
+.|++..+..+...+..-... .|..+...+ .....++...++++-+.. - ...-..-+..+.+.+++......+.
T Consensus 18 ~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~ 96 (618)
T 1qsa_A 18 DNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP 96 (618)
T ss_dssp HTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC
T ss_pred HCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhcc
Confidence 345565565555554322222 222222111 122455666666655542 1 1223445566677888888888666
Q ss_pred hCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHH
Q 005136 143 RNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVC 222 (712)
Q Consensus 143 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 222 (712)
. ++.+...-.....+....|+..+|......+-..|.. .+..+..++..+...|.... ...+
T Consensus 97 ~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~----------------~~~~ 158 (618)
T 1qsa_A 97 E-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDP----------------LAYL 158 (618)
T ss_dssp S-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCH----------------HHHH
T ss_pred C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCH----------------HHHH
Confidence 6 4445555556667777888887787777777665432 33344455554443332211 1122
Q ss_pred HHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCce---eHHHHHHHHHhcCChhH
Q 005136 223 NSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEV---SWSVMIARYNQSGYPEE 299 (712)
Q Consensus 223 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~ 299 (712)
.-+......|+...|..+...+..........++....+ ...+........ ++.. .+...+.-+.+ .+++.
T Consensus 159 -~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~~~rlar-~d~~~ 232 (618)
T 1qsa_A 159 -ERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTG-ATDFTRQMAAVAFASVAR-QDAEN 232 (618)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCHHHHHHHHHHHHHHHH-HCHHH
T ss_pred -HHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhccC-CChhhHHHHHHHHHHHHh-cCHHH
Confidence 223444556777777777665522111112222222222 222233332221 1111 11122233333 37788
Q ss_pred HHHHHHHHHhCCCCCCHHHHH----HHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 005136 300 AFRLFRQMTRYSFKPNTSCFS----IVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFD 375 (712)
Q Consensus 300 a~~~~~~m~~~~~~p~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 375 (712)
|...+....... ..+..... .+.......+...++...+....... .+.....-.+....+.|+++.|...|.
T Consensus 233 A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~ 309 (618)
T 1qsa_A 233 ARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLA 309 (618)
T ss_dssp HHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888876433 22332222 22223333442445555555544332 333333344455567799999999998
Q ss_pred hhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHH
Q 005136 376 SIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIP---NKS 452 (712)
Q Consensus 376 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p---~~~ 452 (712)
.|...........--+.+++...|+.++|..+|..+.++. +|..++.+ .+.|..-.. . ...+.+ ...
T Consensus 310 ~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~--~fYg~lAa-~~Lg~~~~~-~------~~~~~~~~~~~~ 379 (618)
T 1qsa_A 310 RLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQR--GFYPMVAA-QRIGEEYEL-K------IDKAPQNVDSAL 379 (618)
T ss_dssp HSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SHHHHHHH-HHTTCCCCC-C------CCCCCSCCCCHH
T ss_pred HccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCC--ChHHHHHH-HHcCCCCCC-C------CCCCChhHHhhh
Confidence 8876443333334455667778899999988888887652 33333221 111211000 0 000000 000
Q ss_pred ---HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCC------cchHHHH
Q 005136 453 ---TFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKN------EISWTVM 523 (712)
Q Consensus 453 ---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l 523 (712)
.-..-+..+...|....|...+..+.+. .+......+.......|..+.+..........+ +..|..+
T Consensus 380 ~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~ 456 (618)
T 1qsa_A 380 TQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDL 456 (618)
T ss_dssp HHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHH
T ss_pred ccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHH
Confidence 0112233455667777777777776653 222333345555566677776665554433222 1234444
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 005136 524 VRGLAESGYAKESINLFEEMEKTSITPNE 552 (712)
Q Consensus 524 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 552 (712)
+....+.-.++..+-.---..++++.|+.
T Consensus 457 i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a 485 (618)
T 1qsa_A 457 FKRYTSGKEIPQSYAMAIARQESAWNPKV 485 (618)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCCCCC
Confidence 54444444444433332233444555543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.21 Score=53.09 Aligned_cols=54 Identities=11% Similarity=-0.028 Sum_probs=49.6
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 005136 627 LSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLM 680 (712)
Q Consensus 627 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 680 (712)
+..|...|+++.|..+.+++....|.+...|..|+.+|...|+|+.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334678999999999999999999999999999999999999999999988865
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.17 E-value=5.7 Score=37.34 Aligned_cols=145 Identities=12% Similarity=0.026 Sum_probs=87.7
Q ss_pred HHHHhcCCh---HHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 005136 95 NANIQWGNL---EEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKL 171 (712)
Q Consensus 95 ~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 171 (712)
......|++ -+|.+.++ ++..-|.+++++++|.+++.. -...+.+.|....|.++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~~R-----------Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQETR-----------LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHCCHHHHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCccccHHHHHHH-----------HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHH
Confidence 344566777 67766554 566668888899998887544 33445667777666655
Q ss_pred H----HHHHHcCCCCCHhhHHHHHHHHhcccchH-HHHHHH----HHHHHhC--CCCCccHHHHHHHHHHccCChHHHHH
Q 005136 172 F----LKLLESGVKPNEVTFSSICKACAEINDFR-LGLSVF----GLIFKAG--FEKHVSVCNSLITLSLKMGEVDLARS 240 (712)
Q Consensus 172 ~----~~m~~~g~~p~~~~~~~l~~~~~~~~~~~-~a~~~~----~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~ 240 (712)
. +.+.+.++++|..+...|+..+......+ .=.+++ .+-.+.| ..-++.....+...|.+.+++.+|..
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 4 55666788899888888888777654311 112222 2333333 23355666777777777788877777
Q ss_pred HHhhcCCCCcchHHHHHHHHH
Q 005136 241 VFDRMEKRDVVSWTVILDVFI 261 (712)
Q Consensus 241 ~~~~~~~~~~~~~~~ll~~~~ 261 (712)
.|-.-..+.+..+..++.-+.
T Consensus 158 H~ilg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 158 HLVLGTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHH
Confidence 764222222345544443333
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.14 E-value=5.6 Score=37.14 Aligned_cols=181 Identities=12% Similarity=0.067 Sum_probs=105.5
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHH---
Q 005136 95 NANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKL--- 171 (712)
Q Consensus 95 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~--- 171 (712)
......|++-+|.+.++ ++..-|.+++++++|.+++.. -...+.+.|....|.++
T Consensus 21 ~~~I~~G~yYEAhQ~~R-----------tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~l 78 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTLR-----------TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFY 78 (312)
T ss_dssp HHHHHHTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhhccChHHHHHHHH-----------HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHH
Confidence 34456677777776654 567778888899998887654 23445667887776665
Q ss_pred -HHHHHHcCCCCCHhhHHHHHHHHhcccc-----hHHHHHHHHHHHHhCC--CCCccHHHHHHHHHHccCChHHHHHHHh
Q 005136 172 -FLKLLESGVKPNEVTFSSICKACAEIND-----FRLGLSVFGLIFKAGF--EKHVSVCNSLITLSLKMGEVDLARSVFD 243 (712)
Q Consensus 172 -~~~m~~~g~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~ 243 (712)
.+...+.+++++......++..+..... .+-..+...+-.+.|- .-++.....+...|.+.|++.+|...|-
T Consensus 79 lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 79 LLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 5555667888998888888887766331 1222233333333332 2356677788888888888888888775
Q ss_pred hcCCCCcchHHHHHHHHHhc---CCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHH
Q 005136 244 RMEKRDVVSWTVILDVFIEM---GDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMT 308 (712)
Q Consensus 244 ~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 308 (712)
.-...+...+..++.-+... |...++--... -.+-.|.-.++...|..+|+...
T Consensus 159 ~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~-----------RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 159 LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS-----------RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH-----------HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred hCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHH-----------HHHHHHHHhcCHHHHHHHHHHHH
Confidence 22222344444444444333 33333221111 11223444566666666666543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.96 E-value=5.9 Score=36.97 Aligned_cols=123 Identities=11% Similarity=0.079 Sum_probs=66.8
Q ss_pred ccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHH----HHH
Q 005136 231 KMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRL----FRQ 306 (712)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~ 306 (712)
..|++=+|.+.++ ++..-|.+.+++++|++++.. -...+.+.|+...|-++ ++.
T Consensus 25 ~~G~yYEAhQ~~R-----------tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev 82 (312)
T 2wpv_A 25 KAGDYYEAHQTLR-----------TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEV 82 (312)
T ss_dssp HHTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccChHHHHHHHH-----------HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHH
Confidence 3455555555544 455555556666666655432 23344556666555543 455
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCChh-hHHHHHHHHH----HcCC--CCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 005136 307 MTRYSFKPNTSCFSIVLSALASLKALR-SGMHVHAHVL----KIGI--EKDVFISNALIDLYSKCGETKDGRLVFD 375 (712)
Q Consensus 307 m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 375 (712)
..+.+++++......++..+.....-+ .-.++++.++ +.|- .-++.....+...|.+.|++.+|+..|-
T Consensus 83 ~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 83 YDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 556678888877777777765532111 1122233332 2221 2355666666777777777777666654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.35 E-value=0.54 Score=38.71 Aligned_cols=30 Identities=7% Similarity=0.018 Sum_probs=20.7
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhCCC
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSMPF 616 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (712)
+.+.-..++.+|.+.|++++|+.+++.++.
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 344555577777777777777777777754
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.22 E-value=10 Score=37.88 Aligned_cols=34 Identities=3% Similarity=0.090 Sum_probs=23.3
Q ss_pred CCchhhHHHHHHHHHhc--CChHHHHHHhccCCCCC
Q 005136 483 PYDVFLGTALTDTYAKS--GDIESSRRVFDRMPDKN 516 (712)
Q Consensus 483 ~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~ 516 (712)
-++...+..++.+|... .+++.+.+.|.....++
T Consensus 290 ~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 290 LKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred ccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhccc
Confidence 35667777888888654 46777888887766443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.90 E-value=0.54 Score=36.96 Aligned_cols=67 Identities=13% Similarity=0.110 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHhhcCC---HHHHHHHHHHHhccCCC-CCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 617 EPDSNAWASLLSGCKTYKN---EQIAERAVKNLWKLAEE-HPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 617 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
.|+..+-..+.+++.++.+ ..+++.+++.+++..|. ..+.++.|+..+.+.|++++|+++.+.+++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3455555555555444332 23455555555554442 3455555555555555555555555555553
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.76 E-value=1.8 Score=34.54 Aligned_cols=69 Identities=13% Similarity=0.093 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHhhcCC---HHHHHHHHHHHhccCCC-CCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 617 EPDSNAWASLLSGCKTYKN---EQIAERAVKNLWKLAEE-HPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 617 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
.|+..+-..+.+++.++.+ ..+++.+++.++...|+ ..+.++.|+..+++.|++++|+++.+.+++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 5777887778888776664 45778888888887774 567888888889999999999988888887544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=91.73 E-value=4 Score=32.15 Aligned_cols=60 Identities=15% Similarity=0.039 Sum_probs=38.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCC
Q 005136 422 IISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGF 482 (712)
Q Consensus 422 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 482 (712)
.++.....|.-+.-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34455555555555667666543 3466777777777777777777777777777766654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.29 E-value=0.39 Score=47.29 Aligned_cols=66 Identities=11% Similarity=0.022 Sum_probs=46.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh-----CCCccCC
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE-----KGLRKSG 689 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-----~~~~~~~ 689 (712)
..++..+...|+++++...++.++..+|-+-..+..|+.+|.+.|+..+|++.|++..+ -|++|.+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 33445566677777777777777777777777777777777777877777777776543 3665554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.73 E-value=0.94 Score=37.31 Aligned_cols=25 Identities=16% Similarity=0.028 Sum_probs=15.8
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHH
Q 005136 655 AGYVLLSNIYASAGRWIDAMNVRKL 679 (712)
Q Consensus 655 ~~~~~l~~~~~~~g~~~eA~~~~~~ 679 (712)
++-+.++.+|.+.|++++|+.+++.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 4556666666666666666666554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.77 E-value=13 Score=34.88 Aligned_cols=167 Identities=11% Similarity=0.092 Sum_probs=95.4
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHhccc
Q 005136 490 TALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINL----FEEMEKTSITPNELTILSVLFACSHS 565 (712)
Q Consensus 490 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~p~~~~~~~l~~~~~~~ 565 (712)
.++..-|.+++++++|.+++-. -...+.+.|+...|..+ ++-+.+.+++++......++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3444456667777777766433 22344555655444333 34555567777777766666666544
Q ss_pred CcHH-HHHHHHHhcc---hhcCCCC--chHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHH
Q 005136 566 GLVD-KGLKYFNSME---PIYNIKP--NGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIA 639 (712)
Q Consensus 566 g~~~-~a~~~~~~~~---~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 639 (712)
..-+ .=..+.+++. .+.|-.| ++.....++..|.+.+++.+|...|- ....++...+..++..+...+...++
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCccH
Confidence 3211 1122222221 1223223 77888889999999999999998884 34344456776666555444432111
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 640 ERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 640 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
- .+....+--|.-.|+...|..+++...+
T Consensus 187 d--------------lfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 P--------------LYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H--------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1 1222333446778889999887776654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.60 E-value=16 Score=36.41 Aligned_cols=91 Identities=11% Similarity=0.013 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHhccCchHHHHHHHHHHHHc----CCCCc--hh
Q 005136 419 WSAIISGYLEHKQFDLVFAVFNEMLLS--GEIPN---KSTFSSVLCASASVASLEKGKDLHGKIIKL----GFPYD--VF 487 (712)
Q Consensus 419 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~ 487 (712)
...|...|...|++.+|..++..+... |..+. ...+...++.|...+++.+|..++.++... ..+|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 355777788888888888888887642 21111 234455566677777777777777665421 11111 12
Q ss_pred hHHHHHHHHHhcCChHHHHHHh
Q 005136 488 LGTALTDTYAKSGDIESSRRVF 509 (712)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~ 509 (712)
.+...+..+...+++.+|.+.|
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYL 241 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHH
Confidence 3344444445555555555443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.52 E-value=3.9 Score=29.89 Aligned_cols=53 Identities=23% Similarity=0.314 Sum_probs=34.6
Q ss_pred HHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 005136 125 ISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESG 179 (712)
Q Consensus 125 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 179 (712)
+..+..+|+|++|..+.+....||...|-.+-. .+.|--+++..-+.++-.+|
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344566777777777777777777777766544 45666666666666665554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.20 E-value=4.3 Score=29.74 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=28.7
Q ss_pred HHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 005136 126 SGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESG 179 (712)
Q Consensus 126 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 179 (712)
..+..+|+|++|..+.+....||...|-.+-. .+.|--+++..-+.++-.+|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 33455666666666666666666666655543 34455555555555554443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.15 E-value=7.4 Score=37.85 Aligned_cols=163 Identities=7% Similarity=-0.056 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHc-CCCC---chhhHHHHHHHHHhcC-ChHHHHHHhccCCC---CCcchH---
Q 005136 452 STFSSVLCASASVASLEKGKDLHGKIIKL-GFPY---DVFLGTALTDTYAKSG-DIESSRRVFDRMPD---KNEISW--- 520 (712)
Q Consensus 452 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~--- 520 (712)
.....+...|.+.|+.++..+++...... +..+ ...+...+++.+.... ..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777888887777777665431 1111 2334556666665432 22333333332221 111222
Q ss_pred ---HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHhcccCcHHHHHHHHHhcchhc-CCCCchHH-
Q 005136 521 ---TVMVRGLAESGYAKESINLFEEMEKTSITPNE-----LTILSVLFACSHSGLVDKGLKYFNSMEPIY-NIKPNGRH- 590 (712)
Q Consensus 521 ---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~- 590 (712)
..++..|...|++.+|.+++.++.+.=-+.|. ..+..-+..|...+++.++...+....... .+.+++..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 24667777778888887777777663112121 123444556667777777777776664221 11122222
Q ss_pred ---HHHHHHHhh-hcCChHHHHHHHHhC
Q 005136 591 ---YTCVVDMLS-RSGRLSEAEDFINSM 614 (712)
Q Consensus 591 ---~~~l~~~~~-~~g~~~~A~~~~~~~ 614 (712)
..+-+..+. ..++|.+|...|-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 122234455 677777777666553
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.80 E-value=4.9 Score=42.87 Aligned_cols=122 Identities=12% Similarity=0.120 Sum_probs=75.8
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHhhH--HHHHHHHhccc-chHHHHHHHHHHHHh------CCCCCc----
Q 005136 154 AAICGFVQNGF-SFEALKLFLKLLESGVKPNEVTF--SSICKACAEIN-DFRLGLSVFGLIFKA------GFEKHV---- 219 (712)
Q Consensus 154 ~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~--~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~~~---- 219 (712)
.++..+...|+ .+.|+++|+++.+.. |....+ ..++..+...+ +--+|.+++.+.++. ..++..
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 33444444666 578999999998863 333332 22333333333 233455555554432 112111
Q ss_pred -------cHHHHHHHHHHccCChHHHHHHHhhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005136 220 -------SVCNSLITLSLKMGEVDLARSVFDRMEK--R-DVVSWTVILDVFIEMGDLGEARRIFDEMP 277 (712)
Q Consensus 220 -------~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 277 (712)
.....-+..+...|+++.|+++-++... | +-.+|..|..+|...|+++.|+-.++.++
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1233335566678999999999888775 4 45688889999999999999988888886
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.07 E-value=4.8 Score=29.69 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 005136 299 EAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKI 345 (712)
Q Consensus 299 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 345 (712)
+..+-++.+....+.|++......+.+|.+.+++..|.++++-++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555555556666666666666666666666666666655544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.00 E-value=21 Score=40.86 Aligned_cols=164 Identities=9% Similarity=0.096 Sum_probs=89.6
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCC---CcccHHHHHHHHHhcCChhHH
Q 005136 92 CMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQ---NVISWTAAICGFVQNGFSFEA 168 (712)
Q Consensus 92 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 168 (712)
.++..+...|.++-+..+.....+ ++.....+..+|...|++++|...|.+.... +.... ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~----------~~---- 881 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF----------AV---- 881 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC----------SS----
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh----------hh----
Confidence 455556666666666655544433 3444455666677777777777777653210 00000 00
Q ss_pred HHHHHHHHHcC--CCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHccCChHHHHHHH
Q 005136 169 LKLFLKLLESG--VKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHV----SVCNSLITLSLKMGEVDLARSVF 242 (712)
Q Consensus 169 ~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~ 242 (712)
..-+..+.... ...-..-|..++..+-+.+.++.+.++-...++...+.+. ..|..+.+.+...|++++|...+
T Consensus 882 ~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 882 LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 00011111110 1112345666777777777777777777766665322221 25677778888888888887777
Q ss_pred hhcCCC--CcchHHHHHHHHHhcCCHHHHH
Q 005136 243 DRMEKR--DVVSWTVILDVFIEMGDLGEAR 270 (712)
Q Consensus 243 ~~~~~~--~~~~~~~ll~~~~~~~~~~~a~ 270 (712)
-.+... .......|+..++..|..+.-.
T Consensus 962 ~~~pd~~~r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 962 MVLSTTPLKKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHhCCChhhhh
Confidence 666532 2335566677777766655443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.88 E-value=1.6 Score=39.31 Aligned_cols=50 Identities=12% Similarity=0.271 Sum_probs=27.0
Q ss_pred hcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 562 CSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
..+.|+++.++.....-.+. .| |...-..|+..++-.|+|++|.+-++..
T Consensus 7 ll~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34455555555555444422 44 5555555666666666666666555554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=85.85 E-value=15 Score=35.76 Aligned_cols=26 Identities=8% Similarity=0.027 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHhccCC
Q 005136 488 LGTALTDTYAKSGDIESSRRVFDRMP 513 (712)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (712)
....|.+.|.+.|+.++..+++....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45567777777777777777776654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.04 E-value=5.4 Score=29.45 Aligned_cols=62 Identities=18% Similarity=0.329 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 005136 165 SFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLIT 227 (712)
Q Consensus 165 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 227 (712)
.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++-++..- .....+|..++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 44566777778778889999999999999999999999999998876553 333556776654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=84.26 E-value=7.4 Score=35.09 Aligned_cols=124 Identities=13% Similarity=0.112 Sum_probs=75.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCC
Q 005136 525 RGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGR 603 (712)
Q Consensus 525 ~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 603 (712)
....+.|+.++|++.+..-++. .| |...-..++..+|-.|++++|.+-++.+.+ +.|+...-..+.+-+.++..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~aE~ 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQ 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHHHH
Confidence 3456778888998888887774 45 455566778888899999999988887763 35654333222222222211
Q ss_pred hHHHHHHHHhC--C--CCCCHHHHHHHHHH--HhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 604 LSEAEDFINSM--P--FEPDSNAWASLLSG--CKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 604 ~~~A~~~~~~~--~--~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
..+ ++|..- + ......-...++.+ ....|+.++|.++-.++.+.-|..+.
T Consensus 80 ~R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 80 ARK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 111 223221 1 11122223344444 45689999999999999988887654
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=81.02 E-value=27 Score=30.25 Aligned_cols=111 Identities=12% Similarity=0.034 Sum_probs=53.8
Q ss_pred CcchhhhHHHHHHhcCCChhHhHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCC
Q 005136 54 KERYLTTRLLIMYLGSRKSLEANEIVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGR 133 (712)
Q Consensus 54 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (712)
++..+....+..+.+.|+......+.+.+..++..+-...+.++.+.|+.+....+.+-+.+++..+-...+.++.+.|+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 45555555555555555544444444444445555555555555555554444444444444555555555555555555
Q ss_pred hHHHHHHhhhCCCCCcccHHHHHHHHHhcCC
Q 005136 134 VEESMWYFERNPFQNVISWTAAICGFVQNGF 164 (712)
Q Consensus 134 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 164 (712)
.+....+.+-+..++...-...+.++.+.|.
T Consensus 111 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 111 ERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 4433333333444444444444444444444
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=80.63 E-value=27 Score=30.16 Aligned_cols=179 Identities=14% Similarity=0.048 Sum_probs=97.1
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHH
Q 005136 76 NEIVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAA 155 (712)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 155 (712)
..+.+.+..++..+-...+.++.+.|..+....+.+.+..++...-...+.++.+.|+.+....+.+.+..++...-...
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a 101 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSA 101 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 33344444555555555666666666655455555555566666666666677777765555555555666666666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCCh
Q 005136 156 ICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEV 235 (712)
Q Consensus 156 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 235 (712)
+.++.+.|+.+ +...+..+.. .++...-...+.++...++.+. ...+..+.+ .++..+-...+.++.+.+..
T Consensus 102 ~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~ 173 (211)
T 3ltm_A 102 AVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDERA-VEPLIKALK---DEDGWVRQSAADALGEIGGE 173 (211)
T ss_dssp HHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCSH
T ss_pred HHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCch
Confidence 66776666643 3344444442 3555555566666666665433 333333322 34556666666666666664
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHh
Q 005136 236 DLARSVFDRMEKRDVVSWTVILDVFIE 262 (712)
Q Consensus 236 ~~a~~~~~~~~~~~~~~~~~ll~~~~~ 262 (712)
+....+.+.+..++...-...+.++.+
T Consensus 174 ~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 174 RVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 333333333333554444444444443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=80.53 E-value=37 Score=38.87 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=10.9
Q ss_pred HHHHhcccCcHHHHHHHHHhc
Q 005136 558 VLFACSHSGLVDKGLKYFNSM 578 (712)
Q Consensus 558 l~~~~~~~g~~~~a~~~~~~~ 578 (712)
+..++...|++++|.++|++.
T Consensus 848 ~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 848 KALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 344455555555555555554
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=80.13 E-value=27 Score=29.86 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=29.4
Q ss_pred cchhhhHHHHHHhcCCChhHhHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCC
Q 005136 55 ERYLTTRLLIMYLGSRKSLEANEIVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGR 133 (712)
Q Consensus 55 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (712)
+..+....+..+...|+......+.+.+..++..+-...+.++...|+.+....+...+..++...-...+.++.+.|+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 3334444444444444333333333333333333333333344444433333333333333333333333333333333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 712 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.13 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.12 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.11 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.11 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.09 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.07 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.99 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.95 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.88 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.8 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.79 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.77 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.75 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.71 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.7 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.66 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.61 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.6 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.56 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.51 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.46 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.45 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.39 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.39 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.36 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.31 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.29 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.27 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.25 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.24 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.15 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.14 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.12 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.04 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.02 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.01 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.98 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.94 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.86 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.85 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.84 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.82 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.78 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.68 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.49 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.47 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.27 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.2 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.09 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.67 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.48 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.46 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.84 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.72 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.69 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.37 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.16 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.34 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.08 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.5e-21 Score=194.50 Aligned_cols=375 Identities=13% Similarity=0.107 Sum_probs=272.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 005136 287 MIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGE 366 (712)
Q Consensus 287 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 366 (712)
+...+.+.|++++|++.|+++.+.. +-+...+..+...+...|++++|...++.+++.. +.+..++..+..+|...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 3445667777888888777776532 2245666667777777788888888877777654 2345677777788888888
Q ss_pred hHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005136 367 TKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMP---KRNDVSWSAIISGYLEHKQFDLVFAVFNEML 443 (712)
Q Consensus 367 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 443 (712)
+++|...+.......+.....+..........+....+........ .................+....+...+....
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence 8888888888777666555555555555544454444433333222 2344455555666666777777777777766
Q ss_pred HCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchH
Q 005136 444 LSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISW 520 (712)
Q Consensus 444 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 520 (712)
... +.+...+..+...+...|+++.|...+....+.. +.+...+..+...+...|++++|...++... ..+...+
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 240 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHH
Confidence 643 3345666777777888888888888888877753 4456677778888888888888888887765 3455567
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhh
Q 005136 521 TVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLS 599 (712)
Q Consensus 521 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 599 (712)
..+...+...|++++|+..++++.+ +.|+ ...+..+..++...|++++|++.++..... .+.+...+..++.++.
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHH
Confidence 7788888888999999999988887 4554 467778888888889999999888887733 2236777888888888
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 005136 600 RSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGR 669 (712)
Q Consensus 600 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 669 (712)
..|++++|+..+++. ...|+ ...+..+...+...|++++|+..++++++++|+++.++..||.+|.+.|+
T Consensus 317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 899999999988886 55565 66677788888889999999999999999999988899999998888775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=5.9e-21 Score=191.68 Aligned_cols=356 Identities=13% Similarity=0.103 Sum_probs=294.9
Q ss_pred HHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChh
Q 005136 323 LSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQME 402 (712)
Q Consensus 323 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 402 (712)
...+.+.|++++|.+.++.+.+.. +.+...+..+..+|...|++++|...|+++.+.+|.+..+|..+...+...|+++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 345567799999999999998874 3467888899999999999999999999999998888889999999999999999
Q ss_pred hHHHHhhcCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 005136 403 EAKELFDNMPKR---NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIK 479 (712)
Q Consensus 403 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 479 (712)
+|+..+....+. +..............+....+............ ................+....+...+.....
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHhhc
Confidence 999999887643 334455555666667777777766666655543 3334444455566677777888877777766
Q ss_pred cCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 005136 480 LGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTIL 556 (712)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 556 (712)
.. +.....+..+...+...|++++|...++... +.+...|..+...+...|++++|+..+++....+ ..+...+.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 53 4456778888899999999999999998765 3455678889999999999999999999998853 34556778
Q ss_pred HHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHhhc
Q 005136 557 SVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM--PFEPDSNAWASLLSGCKTY 633 (712)
Q Consensus 557 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~ 633 (712)
.+...+...|++++|+..|+++.+ +.| +...+..++.++...|++++|.+.++.. ..+.+...+..+...+...
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence 888999999999999999999873 466 6788999999999999999999999987 2345677888888889999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 634 KNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 634 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
|++++|+..++++++.+|+++.++..+|.+|.+.|++++|++.+++.++..+
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 370 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999988654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2.1e-14 Score=139.04 Aligned_cols=243 Identities=10% Similarity=-0.024 Sum_probs=158.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 005136 419 WSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAK 498 (712)
Q Consensus 419 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 498 (712)
....+..+.+.|++++|+..|++.++.. +-+...+..+..++...|+++.|...+.+..+.. +.+...+..+..+|..
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccc
Confidence 3456677888888888888888888763 3346677777777777788888877777776653 3345555666666666
Q ss_pred cCChHHHHHHhccCCCCCcc---hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHH
Q 005136 499 SGDIESSRRVFDRMPDKNEI---SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYF 575 (712)
Q Consensus 499 ~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 575 (712)
.|++++|.+.++.....++. .+....... ...+.......+..+...+.+.+|...|
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHH
Confidence 66666666666554321110 000000000 0000000111112223345566777777
Q ss_pred HhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 005136 576 NSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 576 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
.++.....-.++...+..++.++...|++++|+..+++. ...|+ ...|..+...+...|++++|+..++++++.+|++
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 766633222335667778888888888888888888876 33443 6677777778888888888888888888888888
Q ss_pred CchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 654 PAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
+.++..+|.+|.+.|++++|++.|++.++.
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888888888888888888888888888774
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.2e-13 Score=133.76 Aligned_cols=272 Identities=11% Similarity=0.027 Sum_probs=201.4
Q ss_pred ceeeHHHHHHHHhccCChhhHHHHhhcCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005136 384 HVVSWNSMIGGYGLNGQMEEAKELFDNMPK--R-NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCA 460 (712)
Q Consensus 384 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~ 460 (712)
+....-.....+.+.|++++|+..|+++.+ | +..+|..++.++...|++++|...|.+..+.. +-+...+..+...
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 96 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVS 96 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccc
Confidence 444445667788999999999999999864 3 45689999999999999999999999998764 3456778888889
Q ss_pred HhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHH
Q 005136 461 SASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLF 540 (712)
Q Consensus 461 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 540 (712)
+...|++++|.+.+....... |+............. ..+.......+..+...+.+.+|.+.+
T Consensus 97 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 97 FTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG---------------GAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTGGGCC------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhHHHhc--cchHHHHHhhhhhhh---------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence 999999999999999988753 221111000000000 001111111223345556778889999
Q ss_pred HHHHHcCC-CCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCC
Q 005136 541 EEMEKTSI-TPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFE 617 (712)
Q Consensus 541 ~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 617 (712)
.+..+... .++...+..+...+...|++++|+..|++.... .| +...+..++.+|.+.|++++|.+.+++. ...
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 236 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 236 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHh
Confidence 88877422 234567778888999999999999999998733 56 6788999999999999999999999987 445
Q ss_pred CC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc-----------hHHHHHHHHHhcCCchhHHHH
Q 005136 618 PD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA-----------GYVLLSNIYASAGRWIDAMNV 676 (712)
Q Consensus 618 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~eA~~~ 676 (712)
|+ ...+..+..+|...|++++|+..++++++++|+++. ++..+..++...|+.+.+...
T Consensus 237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 54 777888999999999999999999999999988765 345677788888887766544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=5.6e-09 Score=101.72 Aligned_cols=257 Identities=12% Similarity=0.024 Sum_probs=133.1
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCchHHHHHHHHHHHHcC--CCC---chhhHHHHHHHH
Q 005136 426 YLEHKQFDLVFAVFNEMLLSGEIPN----KSTFSSVLCASASVASLEKGKDLHGKIIKLG--FPY---DVFLGTALTDTY 496 (712)
Q Consensus 426 ~~~~~~~~~a~~~~~~~~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~---~~~~~~~l~~~~ 496 (712)
+...|++++|+.++++.++.....+ ...+..+...+...|++++|...+....+.. ... ....+..+...+
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 101 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 3444455555555555544321111 1233334444555555555555555544311 000 112333444455
Q ss_pred HhcCChHHHHHHhccCC-------CCC----cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHH
Q 005136 497 AKSGDIESSRRVFDRMP-------DKN----EISWTVMVRGLAESGYAKESINLFEEMEKTSITP----NELTILSVLFA 561 (712)
Q Consensus 497 ~~~g~~~~A~~~~~~~~-------~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~ 561 (712)
...|++..+...+.... .+. ...+..+...+...|+++.+...+.......... ....+......
T Consensus 102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 55566655555554432 111 1133445556666777777777776665532111 12234444455
Q ss_pred hcccCcHHHHHHHHHhcchhcCCC---C--chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-----CHHHHHHHHHHH
Q 005136 562 CSHSGLVDKGLKYFNSMEPIYNIK---P--NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-----DSNAWASLLSGC 630 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~~~~---p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~ 630 (712)
+...++...+...+.+........ + ....+..++..+...|++++|...+++. ...| ....+..+...+
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 556666666666655443221111 1 1233445566666777777777777765 2111 133444556667
Q ss_pred hhcCCHHHHHHHHHHHhc------cCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 631 KTYKNEQIAERAVKNLWK------LAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 631 ~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
...|++++|...+++++. ..|....++..++.+|.+.|++++|++.+++.++
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777753 2344456677777777777777777777776654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.12 E-value=3.1e-11 Score=116.74 Aligned_cols=282 Identities=9% Similarity=-0.063 Sum_probs=185.7
Q ss_pred HHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHH
Q 005136 357 LIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVF 436 (712)
Q Consensus 357 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 436 (712)
++......+..++|+.+++++.+.+|.+..+|+..-..+...+..... +...|++++|+
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~---------------------~~~~~~~~~al 93 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSP---------------------EESAALVKAEL 93 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCH---------------------HHHHHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcch---------------------HHHHHHHHHHH
Confidence 333344444558888888888888877766776544443322221111 22345556668
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcc--CchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC
Q 005136 437 AVFNEMLLSGEIPNKSTFSSVLCASASV--ASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD 514 (712)
Q Consensus 437 ~~~~~~~~~g~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 514 (712)
..++...... +-+...+..+..++... ++.+++...+..+.+.........+......+...+.+++|...++.+.+
T Consensus 94 ~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~ 172 (334)
T d1dcea1 94 GFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (334)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred HHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH
Confidence 8888877653 33444555454444444 45778888888887764332223334455677778889999999888875
Q ss_pred C---CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHH
Q 005136 515 K---NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHY 591 (712)
Q Consensus 515 ~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 591 (712)
. +...|+.+...+...|++++|...+.+..+ +.|+.. .....+...+..+.+...+...... -.++...+
T Consensus 173 ~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~ 245 (334)
T d1dcea1 173 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRC 245 (334)
T ss_dssp TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSC
T ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHHh--CcchhhHH
Confidence 3 455788888888888988887666655444 223221 1222334445556666666665522 12355566
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 005136 592 TCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASA 667 (712)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 667 (712)
..++..+...|+..+|...+.+. ...|+ ...+..+...+...|+.++|...++++++++|+++..|..|+..+.-.
T Consensus 246 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e 323 (334)
T d1dcea1 246 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 323 (334)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHh
Confidence 67778888889999999988876 55554 566777888899999999999999999999999888999888877643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1.6e-10 Score=107.16 Aligned_cols=191 Identities=13% Similarity=0.019 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcc
Q 005136 489 GTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSH 564 (712)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 564 (712)
+..+..+|.+.|++++|...|++.. +.++.+|..+..++...|++++|++.|+++.+ +.|+ ..++..+..++..
T Consensus 40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 40 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHHHHH
Confidence 3344445555555555555555543 23444555556666666666666666666655 3333 3445555555556
Q ss_pred cCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC---CCCCCHH-HHHHHHHHHhhcCCHHHH
Q 005136 565 SGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM---PFEPDSN-AWASLLSGCKTYKNEQIA 639 (712)
Q Consensus 565 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~-~~~~l~~~~~~~g~~~~a 639 (712)
.|++++|...|+...+. .| +......+..++.+.+..+.+..+.... ...+... .....+......+..+.+
T Consensus 118 ~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERL 194 (259)
T ss_dssp TTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 66666666666555522 33 3333333333334444333333332222 1111111 000000001112223333
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 640 ERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 640 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
...+.......|+.+.++..||.+|...|++++|++.+++.++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 195 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 333333333444455556666666666666666666666665544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=2.8e-10 Score=108.07 Aligned_cols=224 Identities=13% Similarity=0.113 Sum_probs=162.4
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC-ChHHHHHHhccCC---CCCcchHHHHHHHH
Q 005136 452 STFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSG-DIESSRRVFDRMP---DKNEISWTVMVRGL 527 (712)
Q Consensus 452 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 527 (712)
..+..+-..+.+.+..++|.+++.++++.+ |-+...+.....++...| ++++|...++... +.+..+|..+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 355556666777888899999999888874 556667777777777766 4788888888765 34566788888888
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCC--
Q 005136 528 AESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGR-- 603 (712)
Q Consensus 528 ~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-- 603 (712)
...|++++|++.++++++ +.| +...|..+...+...|++++|++.++.+.+ +.| +...|+.++.++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HCCccHHHHHHHHHHHHHccccc
Confidence 888999999999988888 455 457788888888888888889888888873 466 67778777777666554
Q ss_pred ----hHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHhc--CCchhH
Q 005136 604 ----LSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH--PAGYVLLSNIYASA--GRWIDA 673 (712)
Q Consensus 604 ----~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~--g~~~eA 673 (712)
+++|+..+.+. ...|+ ...|..+...+. ....+++...++++.++.|+. +.++..++.+|... +..+.+
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~ 276 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 276 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 56777777765 44554 555655555443 444677888888888777764 44556677776543 677778
Q ss_pred HHHHHHHHh
Q 005136 674 MNVRKLMTE 682 (712)
Q Consensus 674 ~~~~~~~~~ 682 (712)
...+++..+
T Consensus 277 ~~~~~ka~~ 285 (315)
T d2h6fa1 277 EDILNKALE 285 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877777654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.4e-09 Score=103.20 Aligned_cols=223 Identities=13% Similarity=0.118 Sum_probs=161.2
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-chHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005136 417 VSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVA-SLEKGKDLHGKIIKLGFPYDVFLGTALTDT 495 (712)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 495 (712)
..++.+...+.+.+.+++|+..++++++.. +-+...|.....++...| ++++|...++.+.+.. +-+..++..+..+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 357778888899999999999999999863 334556666666667665 5899999999998875 5578888889999
Q ss_pred HHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhccc------
Q 005136 496 YAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHS------ 565 (712)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~------ 565 (712)
+.+.|++++|...++.+. ..+...|..+...+...|++++|++.++++++ +.|+ ...|+.+...+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHccccchh
Confidence 999999999999999887 34677899999999999999999999999999 5564 45666655554433
Q ss_pred CcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHhh--cCCHHH
Q 005136 566 GLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM----PFEPDSNAWASLLSGCKT--YKNEQI 638 (712)
Q Consensus 566 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~--~g~~~~ 638 (712)
+.+++|++.+..+.. ..| +...|..++..+...| .+++.+.++.. +...+...+..+...|.. .++.+.
T Consensus 200 ~~~~~ai~~~~~al~---~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~ 275 (315)
T d2h6fa1 200 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 275 (315)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hhhHHhHHHHHHHHH---hCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHH
Confidence 447889999988873 367 6777887777765544 46666666554 222334444445444322 233344
Q ss_pred HHHHHHHHh
Q 005136 639 AERAVKNLW 647 (712)
Q Consensus 639 a~~~~~~~~ 647 (712)
+...++++.
T Consensus 276 ~~~~~~ka~ 284 (315)
T d2h6fa1 276 KEDILNKAL 284 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=3.2e-08 Score=96.15 Aligned_cols=220 Identities=8% Similarity=-0.029 Sum_probs=134.7
Q ss_pred HHHHHhccCchHHHHHHHHHHHHc----CCCCc---hhhHHHHHHHHHhcCChHHHHHHhccCCC----C----CcchHH
Q 005136 457 VLCASASVASLEKGKDLHGKIIKL----GFPYD---VFLGTALTDTYAKSGDIESSRRVFDRMPD----K----NEISWT 521 (712)
Q Consensus 457 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----~~~~~~ 521 (712)
+...+...|++..+...+...... ..... ...+..+...+...|+++.+...+..... . ....+.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 334444555555555555444321 11111 12333455566666777776666654431 1 122344
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC--CCCCH----HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC--chHHHHH
Q 005136 522 VMVRGLAESGYAKESINLFEEMEKTS--ITPNE----LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP--NGRHYTC 593 (712)
Q Consensus 522 ~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~ 593 (712)
.....+...+++..+...+.+..... ..... ..+..+...+...|+++.|...++.........+ ....+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 45566777788888887777655421 11111 2345556677788999999999988763322122 2445667
Q ss_pred HHHHhhhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC---------CCch
Q 005136 594 VVDMLSRSGRLSEAEDFINSM-------PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE---------HPAG 656 (712)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~ 656 (712)
++.++...|++++|...+++. +..|+ ...+..+...|...|++++|.+.+++++++.+. ....
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~ 336 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 336 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHH
Confidence 888999999999999988875 22333 345666777789999999999999999886433 1234
Q ss_pred HHHHHHHHHhcCCchhHHHH
Q 005136 657 YVLLSNIYASAGRWIDAMNV 676 (712)
Q Consensus 657 ~~~l~~~~~~~g~~~eA~~~ 676 (712)
+..+...+...|+.+++...
T Consensus 337 ~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 337 MAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHH
Confidence 45566667778888887654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=3.8e-09 Score=97.54 Aligned_cols=218 Identities=10% Similarity=0.018 Sum_probs=133.8
Q ss_pred hHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHh
Q 005136 433 DLVFAVFNEMLLSGEIPN---KSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVF 509 (712)
Q Consensus 433 ~~a~~~~~~~~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 509 (712)
+.++.-+++........+ ..++..+...+.+.|++++|...|++..+.. +.++.++..+..+|.+.|++++|...|
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 344555555554321111 1344455566777777777777777777653 446677778888888888888888888
Q ss_pred ccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCC
Q 005136 510 DRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIK 585 (712)
Q Consensus 510 ~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 585 (712)
+++.+ .+..++..+..++...|++++|++.+++..+. .|+ ......+..++.+.+..+.+..+....... .
T Consensus 95 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 169 (259)
T d1xnfa_ 95 DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---D 169 (259)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---C
T ss_pred hHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---c
Confidence 87762 34557888888899999999999999998884 454 333334444455556555555555444411 2
Q ss_pred CchHHHHHHHHHhhhcCC----hHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchH
Q 005136 586 PNGRHYTCVVDMLSRSGR----LSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGY 657 (712)
Q Consensus 586 p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 657 (712)
++...+. ++..+..... .+.+...+... ...|+ ..++..+...+...|++++|...+++++..+|++...|
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 2222222 2222222222 22222222211 11232 34566677789999999999999999999999875433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.95 E-value=3.3e-08 Score=93.46 Aligned_cols=185 Identities=11% Similarity=0.101 Sum_probs=128.5
Q ss_pred chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC--C-C-cchHHHHHHHHHHcCChHHHHHHHH
Q 005136 466 SLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD--K-N-EISWTVMVRGLAESGYAKESINLFE 541 (712)
Q Consensus 466 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~A~~~~~ 541 (712)
..+++..++++..+...+.+...+...+..+.+.|+++.|..+|+.+.+ | + ...|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3466777777777655555666777777778888888888888887653 2 2 2357777888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHH-HhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC----C
Q 005136 542 EMEKTSITPNELTILSVLF-ACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM----P 615 (712)
Q Consensus 542 ~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 615 (712)
++++.+ +.+...|..... -+...|+.+.|..+|+.+... .| +...+...++.+.+.|+.++|..+|++. +
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~---~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 887743 222333333332 233457888888888888743 34 5677788888888888888888888875 2
Q ss_pred CCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 616 FEPD--SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 616 ~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
..|+ ...|...+..-...|+.+.+..+.+++.+..|+..
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 2332 45666666666778888888888888888777754
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.88 E-value=5.6e-08 Score=91.81 Aligned_cols=182 Identities=8% Similarity=-0.013 Sum_probs=143.9
Q ss_pred CChHHHHHHhccCC----CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHH
Q 005136 500 GDIESSRRVFDRMP----DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYF 575 (712)
Q Consensus 500 g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 575 (712)
+..++|..+|++.. ..+...|...+..+...|++++|..+++++++.........|...+..+.+.|+.+.|..+|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577778887654 34556788888999999999999999999998432223456888899999999999999999
Q ss_pred HhcchhcCCCC-chHHHHHHHHHh-hhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 005136 576 NSMEPIYNIKP-NGRHYTCVVDML-SRSGRLSEAEDFINSM-PF-EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 576 ~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 651 (712)
+++.. ..| +...+...+... ...|+.+.|..+|+.+ .. ..+...|...+..+...|+.+.|..+++++++..|
T Consensus 158 ~~al~---~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHT---STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHH---hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 99873 344 555565555543 3468899999999988 22 34578889999999999999999999999999887
Q ss_pred CCCc----hHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 652 EHPA----GYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 652 ~~~~----~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
.++. ++..++..-...|+.+.+..+.+++.+.-
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 6654 67788887788899999999999987754
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=5e-08 Score=84.31 Aligned_cols=123 Identities=9% Similarity=-0.063 Sum_probs=82.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcC
Q 005136 524 VRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSG 602 (712)
Q Consensus 524 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 602 (712)
...+...|+++.|++.|.++ .+|+..++..+..++...|++++|++.|++..+ +.| +...|..++.+|.+.|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~---ldp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN---RDKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH---HhhhhhhhHHHHHHHHHhhc
Confidence 45566777777777777653 345666677777777777777777777777763 356 5667777777777777
Q ss_pred ChHHHHHHHHhC----CCCC-------------C-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 005136 603 RLSEAEDFINSM----PFEP-------------D-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 603 ~~~~A~~~~~~~----~~~p-------------~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
++++|...|++. +..+ . ..++..+..++...|++++|.+.+++++++.|+.
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 777777777664 1000 0 2445556666777777777777777777777763
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.79 E-value=2e-08 Score=96.46 Aligned_cols=231 Identities=7% Similarity=-0.072 Sum_probs=148.3
Q ss_pred hcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCC--hhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 005136 363 KCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQ--MEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFN 440 (712)
Q Consensus 363 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 440 (712)
..|++++|+..++.+...+|.+...|..+..++...++ .++| ...+.
T Consensus 85 ~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a-------------------------------~~~~~ 133 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARE-------------------------------LELCA 133 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHH-------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHH-------------------------------HHHHH
Confidence 34456677777777777776666666666655554443 4555 66666
Q ss_pred HHHHCCCCCCHHHH-HHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcch
Q 005136 441 EMLLSGEIPNKSTF-SSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEIS 519 (712)
Q Consensus 441 ~~~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 519 (712)
++.... +++...+ ......+...+.++.|...++.+.+.+ +-+...+..+..++.+.|++++|...+....+..+..
T Consensus 134 ~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 211 (334)
T d1dcea1 134 RFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE 211 (334)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH
T ss_pred HHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH
Confidence 655542 2233333 233345556667777777766666553 3456667777778888888877766665544322222
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHh
Q 005136 520 WTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDML 598 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 598 (712)
. .....+...+..+++...+....... +++...+..+...+...|+.++|...+.+.. ...| +...+..++.+|
T Consensus 212 ~-~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~p~~~~~~~~l~~~~ 286 (334)
T d1dcea1 212 L-ELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELE---PENKWCLLTIILLMRAL 286 (334)
T ss_dssp H-HHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHH---hhCchHHHHHHHHHHHH
Confidence 2 23334556677778888888877742 2334455566667777788899998888877 3456 567788889999
Q ss_pred hhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHh
Q 005136 599 SRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCK 631 (712)
Q Consensus 599 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 631 (712)
.+.|++++|.+.++++ ...|+ ...|..+...+.
T Consensus 287 ~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 287 DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp CTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 9999999999999987 55675 445555554444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=2.5e-08 Score=78.21 Aligned_cols=92 Identities=11% Similarity=0.047 Sum_probs=61.4
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCc
Q 005136 593 CVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRW 670 (712)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 670 (712)
.-+..+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+|.++...|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 3455666667777777776665 3333 3555666666666777777777777777777777777777777777777777
Q ss_pred hhHHHHHHHHHhCC
Q 005136 671 IDAMNVRKLMTEKG 684 (712)
Q Consensus 671 ~eA~~~~~~~~~~~ 684 (712)
++|+..+++.++..
T Consensus 88 ~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 88 EEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777766644
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.75 E-value=2.3e-08 Score=87.99 Aligned_cols=103 Identities=11% Similarity=-0.032 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHH
Q 005136 550 PNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASL 626 (712)
Q Consensus 550 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l 626 (712)
|+...+......+.+.|++++|+..|+++... .| ++..|..++.+|.+.|++++|+..+++. ...|+ ...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 34444444444455555555555555444421 33 3444444555555555555555544443 33332 3444444
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 627 LSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 627 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
..+|...|++++|...+++++++.|+++.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~ 107 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRL 107 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHH
Confidence 44444455555555555554444444333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=7e-08 Score=75.54 Aligned_cols=105 Identities=14% Similarity=0.101 Sum_probs=87.3
Q ss_pred HHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcC
Q 005136 558 VLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYK 634 (712)
Q Consensus 558 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g 634 (712)
-...+...|++++|+..|+++... .| +...|..++.+|...|++++|+..+++. ... .+...|..+..++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 345677788888888888888733 66 7788999999999999999999999887 333 45778888888899999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 635 NEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 635 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
++++|+..++++++.+|+++.++..+..+-.
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999988888876643
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.70 E-value=1.6e-08 Score=78.60 Aligned_cols=91 Identities=16% Similarity=0.051 Sum_probs=82.3
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 005136 591 YTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAG 668 (712)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 668 (712)
...++..+.+.|++++|+..+++. ...|+ ...|..+..++.+.|++++|+..++++++++|+++.++..|+.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 345788889999999999999997 44564 7888888888999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHH
Q 005136 669 RWIDAMNVRKLMT 681 (712)
Q Consensus 669 ~~~eA~~~~~~~~ 681 (712)
++++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999864
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=5e-08 Score=81.62 Aligned_cols=116 Identities=9% Similarity=0.019 Sum_probs=96.8
Q ss_pred HHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcC
Q 005136 558 VLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYK 634 (712)
Q Consensus 558 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g 634 (712)
....|.+.|++++|+..|+++.+ +.| +...|..++.+|...|++++|...|++. ...|+ ...|..++.++...|
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHhhhccc---cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 44567888999999999998884 367 7888999999999999999999999987 44554 678888889999999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHH--hcCCchhHHHH
Q 005136 635 NEQIAERAVKNLWKLAEEHPAGYVLLSNIYA--SAGRWIDAMNV 676 (712)
Q Consensus 635 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~eA~~~ 676 (712)
++++|...+++++++.|+++.++..+..+.. ..+.+++|+..
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999888877643 44556777654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.61 E-value=2.7e-08 Score=87.47 Aligned_cols=94 Identities=6% Similarity=-0.070 Sum_probs=68.3
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHH
Q 005136 516 NEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTC 593 (712)
Q Consensus 516 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 593 (712)
+...+......+.+.|++++|+..|+++++. .| +...|..+..+|.+.|++++|+..|+++. .+.| +...|..
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~ 77 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFF 77 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHH
Confidence 3344555667777888888888888877773 44 44567777777888888888888888776 4566 5677777
Q ss_pred HHHHhhhcCChHHHHHHHHhC
Q 005136 594 VVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~ 614 (712)
++.+|.+.|++++|+..|+++
T Consensus 78 lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 888888888888888777765
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=8.5e-08 Score=80.17 Aligned_cols=96 Identities=9% Similarity=0.057 Sum_probs=86.1
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 005136 590 HYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASA 667 (712)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 667 (712)
.+...+..|.+.|++++|+..|++. ...| +...|..+..+|...|++++|...++++++++|+++.++..+|.++...
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence 3445678899999999999999988 4445 4778888888899999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhCCC
Q 005136 668 GRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 668 g~~~eA~~~~~~~~~~~~ 685 (712)
|++++|+..+++.++..+
T Consensus 92 g~~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKP 109 (159)
T ss_dssp TCHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 999999999999988654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=7.7e-08 Score=75.37 Aligned_cols=107 Identities=16% Similarity=0.018 Sum_probs=81.0
Q ss_pred HHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCC---hHHHHHHHHhC-CCCCCH---HHHHHHH
Q 005136 556 LSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGR---LSEAEDFINSM-PFEPDS---NAWASLL 627 (712)
Q Consensus 556 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~ 627 (712)
..++..+...+++++|.+.|++... ..| ++.++..++.++.+.++ +++|+.+++++ ...|.+ ..+..+.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~---~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA---AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 3466677778888888888888873 356 67888888888887554 45688888886 444443 3567788
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 628 SGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 628 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
.+|.+.|++++|++.++++++++|++..+...+..+..
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 88999999999999999999999998877666654443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=2e-06 Score=73.91 Aligned_cols=121 Identities=11% Similarity=-0.037 Sum_probs=58.5
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhC---CCCCcccHHHHHHHHHhcCChhHHHHH
Q 005136 95 NANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERN---PFQNVISWTAAICGFVQNGFSFEALKL 171 (712)
Q Consensus 95 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~ 171 (712)
..+...|+++.|++.|.++.++++.+|..+..+|...|++++|...|++. .+.+...|..+..++.+.|++++|+..
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~ 92 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD 92 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHH
Confidence 33344455555555555544444444445555555555555555555432 233444555555555555555555555
Q ss_pred HHHHHHcCC--------------CCC-HhhHHHHHHHHhcccchHHHHHHHHHHHHhCC
Q 005136 172 FLKLLESGV--------------KPN-EVTFSSICKACAEINDFRLGLSVFGLIFKAGF 215 (712)
Q Consensus 172 ~~~m~~~g~--------------~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 215 (712)
|++...... .++ ..++..+..++...|++++|.+.++...+...
T Consensus 93 ~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 93 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 555443210 000 12334445555566666666666655554443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.46 E-value=3.2e-06 Score=78.52 Aligned_cols=207 Identities=11% Similarity=0.017 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHH
Q 005136 419 WSAIISGYLEHKQFDLVFAVFNEMLLS----GEIPN-KSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALT 493 (712)
Q Consensus 419 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 493 (712)
|......|...+++++|.+.|.+..+. +-+++ ..+|..+..+|.+.|++++|...+....+.
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~------------- 106 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI------------- 106 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH-------------
Confidence 344566677777777777777766542 11111 234555555566666666666655544331
Q ss_pred HHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHH-cCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhcccCc
Q 005136 494 DTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAE-SGYAKESINLFEEMEKT----SITPN-ELTILSVLFACSHSGL 567 (712)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~ 567 (712)
+...|+...+.. .+..+...|.. .|++++|++.+++..+. +..+. ..++..+...+...|+
T Consensus 107 --~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~ 173 (290)
T d1qqea_ 107 --FTHRGQFRRGAN-----------FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (290)
T ss_dssp --HHHTTCHHHHHH-----------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred --hhhcccchhHHH-----------HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcCh
Confidence 222222222211 23334444433 46666666666665431 11111 1335556666667777
Q ss_pred HHHHHHHHHhcchhcCCCC----c-hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC------HHHHHHHHHHHhh--c
Q 005136 568 VDKGLKYFNSMEPIYNIKP----N-GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD------SNAWASLLSGCKT--Y 633 (712)
Q Consensus 568 ~~~a~~~~~~~~~~~~~~p----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~l~~~~~~--~ 633 (712)
+++|+.+|+++.......+ . ...+...+.++...|+++.|...+++. ...|. ......++.++.. .
T Consensus 174 y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~ 253 (290)
T d1qqea_ 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (290)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCH
Confidence 7777777766553211111 1 112334445555667777777777765 22222 2233444444332 2
Q ss_pred CCHHHHHHHHHHHhccCC
Q 005136 634 KNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 634 g~~~~a~~~~~~~~~~~p 651 (712)
+.+++|...++++.+++|
T Consensus 254 e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 254 EQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp TTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHhhcCH
Confidence 335666666655555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=7.2e-07 Score=75.05 Aligned_cols=132 Identities=8% Similarity=0.010 Sum_probs=95.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhh
Q 005136 520 WTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLS 599 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 599 (712)
+......+.+.|++++|+..|.+.+.. .|.... ..+.-......+ ...+|..++.+|.
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~------------~~~~~~~~~~~~--------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSW--LEYESS------------FSNEEAQKAQAL--------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCC------------CCSHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhccc------------cchHHHhhhchh--------HHHHHHHHHHHHH
Confidence 444556777888888888888877763 121100 000000111111 2346777899999
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhH
Q 005136 600 RSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDA 673 (712)
Q Consensus 600 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA 673 (712)
+.|++++|+..+++. ...| +...+..+..++...|++++|...++++++++|+++.+...+..+..+.+...+.
T Consensus 74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887 4455 5788888888899999999999999999999999999999999998776655544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.39 E-value=2.6e-05 Score=71.10 Aligned_cols=230 Identities=12% Similarity=0.011 Sum_probs=138.5
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHcCCCCchhhHH
Q 005136 415 NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASAS----VASLEKGKDLHGKIIKLGFPYDVFLGT 490 (712)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 490 (712)
|+..+..|...+...+++++|++.|++..+.| +...+..|-..|.. ..++..+..++....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 34566677777777788888888888877765 22233223333322 334444444444443332
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHhccc
Q 005136 491 ALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAE----SGYAKESINLFEEMEKTSITPNELTIL-SVLFACSHS 565 (712)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~ 565 (712)
++.....+...+.. .++.+.|...++...+.|..+....+. .........
T Consensus 69 -------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~ 123 (265)
T d1ouva_ 69 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVT 123 (265)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSC
T ss_pred -------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCccc
Confidence 12222222222222 345667777777776654322111111 111112234
Q ss_pred CcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHH
Q 005136 566 GLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSR----SGRLSEAEDFINSMPFEPDSNAWASLLSGCKT----YKNEQ 637 (712)
Q Consensus 566 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 637 (712)
.....+...+..... ..+...+..|+..|.. ..+...+..+++......+......+...+.. ..+.+
T Consensus 124 ~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 124 RDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred chhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchh
Confidence 556677777766551 2356667777777764 44566777777776434566666666655554 56899
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHh----cCCchhHHHHHHHHHhCCCcc
Q 005136 638 IAERAVKNLWKLAEEHPAGYVLLSNIYAS----AGRWIDAMNVRKLMTEKGLRK 687 (712)
Q Consensus 638 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~~ 687 (712)
.|+.+++++.+. +++.++..||.+|.+ ..++++|.+++++..+.|.++
T Consensus 200 ~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 200 EALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred hhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 999999999876 467899999999986 448999999999998887543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.1e-06 Score=73.97 Aligned_cols=64 Identities=8% Similarity=-0.081 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 622 AWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 622 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
++..+..+|.+.|++++|+..++++++++|+++.++..+|.+|...|++++|+..+++.++.++
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 4566777799999999999999999999999999999999999999999999999999988664
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.36 E-value=2e-06 Score=80.01 Aligned_cols=164 Identities=10% Similarity=0.069 Sum_probs=74.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHhccCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HH
Q 005136 488 LGTALTDTYAKSGDIESSRRVFDRMPD-----KN----EISWTVMVRGLAESGYAKESINLFEEMEKTSI---TPN--EL 553 (712)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~--~~ 553 (712)
.|.....+|...|++++|.+.|.+..+ .+ ..+|..+..+|.+.|++++|++.+++..+.-. .+. ..
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 455555556666666666666555431 11 12455555555566666666666555443100 000 12
Q ss_pred HHHHHHHHhc-ccCcHHHHHHHHHhcchhc---CCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CC---CC----C-
Q 005136 554 TILSVLFACS-HSGLVDKGLKYFNSMEPIY---NIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF---EP----D- 619 (712)
Q Consensus 554 ~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p----~- 619 (712)
.+..+...|. ..|++++|++.+++..+.. +..+ ...++..++.+|...|++++|.+.++++ .. .+ .
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 2334444442 2455666666555543211 1111 1233445555555566666666555553 11 11 0
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 005136 620 SNAWASLLSGCKTYKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 620 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 651 (712)
...+...+..+...|+.+.|...++++.+.+|
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 11122223334455555666555555555544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=6.5e-07 Score=69.92 Aligned_cols=95 Identities=8% Similarity=-0.057 Sum_probs=79.9
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhc---CCHHHHHHHHHHHhccCCCC--CchHHHHHHHH
Q 005136 592 TCVVDMLSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTY---KNEQIAERAVKNLWKLAEEH--PAGYVLLSNIY 664 (712)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 664 (712)
..+++.+...+++++|.+.|++. ... .+..++..+..++.+. +++++|+.+++++++.+|.+ +.+++.||.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 46778888999999999999998 444 4578888888888764 45667999999999988764 45899999999
Q ss_pred HhcCCchhHHHHHHHHHhCCCc
Q 005136 665 ASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 665 ~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
.+.|++++|+++|+++++..+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~ 104 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQ 104 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhhHHHHHHHHHHHHhCcC
Confidence 9999999999999999996643
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=9.7e-07 Score=70.09 Aligned_cols=93 Identities=9% Similarity=0.090 Sum_probs=62.6
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc-------hHHHHH
Q 005136 591 YTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA-------GYVLLS 661 (712)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 661 (712)
+..++..+.+.|++++|+..|++. ...| +...+..+..+|...|++++|+..++++++++|+++. +|..+|
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445666777777777777777665 3333 3666666777777777777777777777777776654 444555
Q ss_pred HHHHhcCCchhHHHHHHHHHhC
Q 005136 662 NIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 662 ~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
.++...|++++|++++++.+..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 5666677777777777776553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.27 E-value=4e-06 Score=70.24 Aligned_cols=95 Identities=5% Similarity=-0.040 Sum_probs=77.6
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
...|..++.+|.+.|++++|+..+++. ...| +...+.....++...|++++|+..++++++++|+++.+...+..+..
T Consensus 64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345677889999999999999999987 3344 57888888889999999999999999999999999999999998887
Q ss_pred hcCCch-hHHHHHHHHHh
Q 005136 666 SAGRWI-DAMNVRKLMTE 682 (712)
Q Consensus 666 ~~g~~~-eA~~~~~~~~~ 682 (712)
..+... ...+.+.+|.+
T Consensus 144 ~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 144 KAKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHh
Confidence 766544 35556666554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.25 E-value=3.6e-06 Score=69.13 Aligned_cols=64 Identities=11% Similarity=-0.048 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 622 AWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 622 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
++..+..+|.+.|++++|+..++++++++|++..+|..+|.++...|++++|+..+++.++.++
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P 132 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 132 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4455666677778888888888888888888878888888888888888888888877776543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=1.1e-07 Score=96.26 Aligned_cols=149 Identities=13% Similarity=0.023 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH--hcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHH
Q 005136 533 AKESINLFEEMEKTSITPNELTILSVLFA--CSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAED 609 (712)
Q Consensus 533 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 609 (712)
+..+++.++...+....++.......+.. ....+.++.|+..++... ++.| +...+..++..+.+.|+.++|..
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~ 141 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVK 141 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHH
Confidence 34556666666554333433222221111 223455566665555443 4455 56667777888888888888776
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 610 FINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 610 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
.+++.-.......+..+...+...|++++|+..+++++++.|+++..|+.||.++...|+..+|+..+.+.+...
T Consensus 142 ~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~ 216 (497)
T d1ya0a1 142 PQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 665431101134566677778888888888888888888888888888888888888888888888888877654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.24 E-value=2.5e-06 Score=71.70 Aligned_cols=131 Identities=13% Similarity=0.019 Sum_probs=89.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHh
Q 005136 520 WTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDML 598 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 598 (712)
+......+...|++++|+..|.++++. .+... . .... .. ...+.| +...+..++.+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~~~-------~---~~~~-------~~---~~~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR-------A---AAED-------AD---GAKLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH-------H---HSCH-------HH---HGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--hhhhh-------h---hhhh-------HH---HHHhChhhHHHHHHHHHHH
Confidence 344456677778888888877776541 00000 0 0000 00 011234 566777888889
Q ss_pred hhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchh
Q 005136 599 SRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWID 672 (712)
Q Consensus 599 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 672 (712)
.+.|++++|+..+++. ...|+ ...|..+..++...|++++|+..++++++++|+++.+...|..+..+.....+
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988887 55554 77788888888899999999999999999999998888888877665544433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.15 E-value=4.6e-06 Score=68.52 Aligned_cols=127 Identities=8% Similarity=-0.107 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHh
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDML 598 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 598 (712)
.+......+.+.|++.+|+..|.+++.. .|... ............ .....++..++.+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~~~~--------~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLDKKK--------NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHHhhh--------hHHHHHHhhHHHHH
Confidence 3455667778888888888888887762 22110 000000000000 11345777899999
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 005136 599 SRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYAS 666 (712)
Q Consensus 599 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 666 (712)
.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++.+...+..+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999987 4455 578899999999999999999999999999999999988887766544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.14 E-value=1.1e-05 Score=67.56 Aligned_cols=65 Identities=11% Similarity=0.001 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 622 AWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 622 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
.+..+..+|...|++++|+..++++++++|+++.++..++.++...|++++|+..++++++..+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~ 130 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 130 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34567777899999999999999999999999999999999999999999999999999986543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.12 E-value=4.2e-06 Score=70.31 Aligned_cols=66 Identities=8% Similarity=-0.081 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 620 SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 620 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
...+..+..++.+.|++++|+..++++++++|+++.+|..+|.+|.+.|++++|++.+++.++..+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p 142 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 142 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 445667778899999999999999999999999999999999999999999999999999998654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.04 E-value=1.3e-05 Score=67.41 Aligned_cols=70 Identities=11% Similarity=0.009 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh-----CCCccCCc
Q 005136 621 NAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE-----KGLRKSGG 690 (712)
Q Consensus 621 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-----~~~~~~~~ 690 (712)
..+..++..+...|++++|...++++++.+|.+..+|..|+.+|.+.|++++|++.|+++.+ -|+.|.+.
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 45667788899999999999999999999999999999999999999999999999999743 57777653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.02 E-value=3.1e-06 Score=68.63 Aligned_cols=126 Identities=13% Similarity=0.076 Sum_probs=78.8
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhccc----------CcHHHHHHHHHhcchhcCCCC-chHHHHHH
Q 005136 527 LAESGYAKESINLFEEMEKTSITPNE-LTILSVLFACSHS----------GLVDKGLKYFNSMEPIYNIKP-NGRHYTCV 594 (712)
Q Consensus 527 ~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 594 (712)
|-+.+.+++|+..++...+ +.|+. ..+..+..++... +.+++|+..|+++. .+.| +...|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl---~l~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---LIDPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH---HhcchhhHHHhhH
Confidence 4455667777777777777 44543 4555555555432 33456666666665 2355 56666666
Q ss_pred HHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHH
Q 005136 595 VDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAM 674 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~ 674 (712)
+.+|...|++. ++... ..+++++|.+.++++++++|+++..+..|+... +|.
T Consensus 82 G~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~ 133 (145)
T d1zu2a1 82 GNAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAP 133 (145)
T ss_dssp HHHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THH
T ss_pred HHHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHH
Confidence 66665544321 11111 123568899999999999999988777777664 666
Q ss_pred HHHHHHHhCCC
Q 005136 675 NVRKLMTEKGL 685 (712)
Q Consensus 675 ~~~~~~~~~~~ 685 (712)
+++.+..+.|+
T Consensus 134 ~~~~e~~k~~~ 144 (145)
T d1zu2a1 134 QLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHHHHHHhc
Confidence 66666666653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.01 E-value=6.5e-06 Score=63.24 Aligned_cols=87 Identities=10% Similarity=0.006 Sum_probs=54.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhh
Q 005136 522 VMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLS 599 (712)
Q Consensus 522 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 599 (712)
.+...+.+.|++++|+..+++.+. ..| +...|..+..++.+.|++++|+..|+++.+ +.| +...+..++.+|.
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccc---cccccccchHHHHHHHH
Confidence 345556666777777777776666 344 345566666666666666666666666652 245 4666666666666
Q ss_pred hcCChHHHHHHHHh
Q 005136 600 RSGRLSEAEDFINS 613 (712)
Q Consensus 600 ~~g~~~~A~~~~~~ 613 (712)
..|++++|.+.+++
T Consensus 96 ~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 96 NEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 66666666666654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=0.005 Score=56.54 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=29.6
Q ss_pred HHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 005136 322 VLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFD 375 (712)
Q Consensus 322 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 375 (712)
++..+.+.+++......++...+.+ +..+.+++...|...++++.-+...+
T Consensus 254 ~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 254 AVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 3334444555666666666655444 34577777777777777655444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.94 E-value=0.0061 Score=55.93 Aligned_cols=294 Identities=9% Similarity=0.001 Sum_probs=140.3
Q ss_pred CCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCC
Q 005136 217 KHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGY 296 (712)
Q Consensus 217 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 296 (712)
|+..-...+...|.+.|.++.|..++..+. .|..++..+.+.++++.|.+.+.+.. +..+|..+...+.+...
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e 84 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKE 84 (336)
T ss_dssp C----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTC
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcH
Confidence 444455566777778888888888887543 46677777777777777777776543 44567777777766655
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHh
Q 005136 297 PEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDS 376 (712)
Q Consensus 297 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 376 (712)
..-+ .+.......++.....++..+-..|.+++...+++..... -..+...++.++..|++.+. ++..+.+..
T Consensus 85 ~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~l~~ 157 (336)
T d1b89a_ 85 FRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREHLEL 157 (336)
T ss_dssp HHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred HHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHHHHh
Confidence 4332 2222333445555566777777777777777777765432 23455666777777776543 333333322
Q ss_pred hhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005136 377 IVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSS 456 (712)
Q Consensus 377 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ 456 (712)
... ......++..|...+-+.++ +..|.+.|+++.|..++-. . .++......
T Consensus 158 ~s~-----~y~~~k~~~~c~~~~l~~el------------------v~Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~ 209 (336)
T d1b89a_ 158 FWS-----RVNIPKVLRAAEQAHLWAEL------------------VFLYDKYEEYDNAIITMMN---H--PTDAWKEGQ 209 (336)
T ss_dssp HST-----TSCHHHHHHHHHTTTCHHHH------------------HHHHHHTTCHHHHHHHHHH---S--TTTTCCHHH
T ss_pred ccc-----cCCHHHHHHHHHHcCChHHH------------------HHHHHhcCCHHHHHHHHHH---c--chhhhhHHH
Confidence 211 11122233344444444333 4445555566555444322 1 222222333
Q ss_pred HHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHH
Q 005136 457 VLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKES 536 (712)
Q Consensus 457 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 536 (712)
.+..+.+..+++...+++....+. .+...+.++......-+.....+ .+.+.++..-.
T Consensus 210 f~e~~~k~~N~e~~~~~i~~yL~~----~p~~i~~lL~~v~~~~d~~r~V~------------------~~~k~~~l~li 267 (336)
T d1b89a_ 210 FKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVN------------------YFSKVKQLPLV 267 (336)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHH------------------HHHHTTCTTTT
T ss_pred HHHHHHccCChHHHHHHHHHHHHc----CHHHHHHHHHHhccCCCHHHHHH------------------HHHhcCCcHHH
Confidence 344445555555444444443332 12233344433333333333333 33344444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHh
Q 005136 537 INLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNS 577 (712)
Q Consensus 537 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 577 (712)
...++...+.| +....+.+...|...+|++.-.+..+.
T Consensus 268 ~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 268 KPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp HHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 45554444332 234555566666666665554444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.86 E-value=2.7e-05 Score=64.03 Aligned_cols=89 Identities=15% Similarity=0.028 Sum_probs=63.5
Q ss_pred HHHhhhcCChHHHHHHHHhC----CCCCC----------HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC--------
Q 005136 595 VDMLSRSGRLSEAEDFINSM----PFEPD----------SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE-------- 652 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~----~~~p~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-------- 652 (712)
+..+.+.|++++|+..|++. +..|+ ...|..+..+|...|++++|...+++++++.|.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 44455666677766666654 11121 345667777788888888888888888765432
Q ss_pred ---CCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 653 ---HPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 653 ---~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
...++..+|.+|...|++++|++.+++.++.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1236888999999999999999999998764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.85 E-value=0.0026 Score=57.23 Aligned_cols=230 Identities=10% Similarity=0.021 Sum_probs=124.9
Q ss_pred eeeHHHHHHHHhccCChhhHHHHhhcCCC-CCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHH-H
Q 005136 385 VVSWNSMIGGYGLNGQMEEAKELFDNMPK-RNDVSWSAIISGYLE----HKQFDLVFAVFNEMLLSGEIPNKSTFSSV-L 458 (712)
Q Consensus 385 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~p~~~~~~~l-l 458 (712)
+..+..+...+...+++++|++.|++..+ .+...+..|...|.. ..++..|...+......+.+.-...+..+ .
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~ 81 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYY 81 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccccc
Confidence 45677778888889999999999998864 366677778888776 56888999999988887632222111111 1
Q ss_pred HHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHH
Q 005136 459 CASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESIN 538 (712)
Q Consensus 459 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 538 (712)
.......+.+.|...+....+.|.... ...+...+.... ........+..
T Consensus 82 ~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~---------------------------~~~~~~~~a~~ 131 (265)
T d1ouva_ 82 SGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGK---------------------------VVTRDFKKAVE 131 (265)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCS---------------------------SSCCCHHHHHH
T ss_pred cccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCC---------------------------cccchhHHHHH
Confidence 112234566777777777666542211 112222221100 00112233333
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcc----cCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhh----cCChHHHHHH
Q 005136 539 LFEEMEKTSITPNELTILSVLFACSH----SGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSR----SGRLSEAEDF 610 (712)
Q Consensus 539 ~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 610 (712)
.+..... ..+...+..+...+.. ..+...+...++...+ ..+......++..|.. ..+.++|..+
T Consensus 132 ~~~~~~~---~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~----~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~ 204 (265)
T d1ouva_ 132 YFTKACD---LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD----LKDSPGCFNAGNMYHHGEGATKNFKEALAR 204 (265)
T ss_dssp HHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCSSCCCHHHHHHH
T ss_pred Hhhhhhc---ccccchhhhhhhhhccCCCcccccccchhhhhcccc----ccccccccchhhhcccCcccccchhhhhhh
Confidence 3333333 1222333333333332 3445555555555441 1245555555555544 4567777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccCC
Q 005136 611 INSMPFEPDSNAWASLLSGCKT----YKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 611 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 651 (712)
|++....-++.....+...|.. ..+.++|.++++++.+..+
T Consensus 205 ~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 205 YSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 7766323345555555555543 3367777777777766543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=2.9e-05 Score=57.27 Aligned_cols=78 Identities=13% Similarity=-0.008 Sum_probs=61.2
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC----C----CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM----P----FEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGY 657 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 657 (712)
+...+..++..+.+.|++++|+..|++. + ..++ ..++..+..++.+.|++++|...++++++++|+++.++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 3444557788888888888888888765 1 1222 56788888889999999999999999999999999888
Q ss_pred HHHHHHH
Q 005136 658 VLLSNIY 664 (712)
Q Consensus 658 ~~l~~~~ 664 (712)
..++...
T Consensus 84 ~Nl~~~~ 90 (95)
T d1tjca_ 84 GNLKYFE 90 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=4.5e-05 Score=60.05 Aligned_cols=91 Identities=11% Similarity=0.072 Sum_probs=44.9
Q ss_pred HHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CC---CCC-----HHHHHHHHH
Q 005136 559 LFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF---EPD-----SNAWASLLS 628 (712)
Q Consensus 559 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~-----~~~~~~l~~ 628 (712)
...+...|++++|+..|.+..+. .| +...+..++.+|.+.|++++|+..++++ .. .+. ..++..+..
T Consensus 11 G~~~~~~~~y~~Ai~~y~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 11 GNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 33444444444444444444421 33 3444444555555555555555555443 10 111 123444555
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCC
Q 005136 629 GCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 629 ~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
.+...+++++|...+++++..+|+
T Consensus 88 ~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCC
Confidence 566667777777777777666554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.78 E-value=6e-06 Score=66.87 Aligned_cols=98 Identities=11% Similarity=0.012 Sum_probs=70.7
Q ss_pred cccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 005136 563 SHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAER 641 (712)
Q Consensus 563 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 641 (712)
.+.+.+++|+..|+.... +.| +...+..++.+|...+++..+.+ ..+.+++|+.
T Consensus 8 ~r~~~fe~A~~~~e~al~---~~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai~ 62 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHh---hCCcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHHH
Confidence 345556666666666652 255 56666666666655554433332 2345688999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhcCC-----------chhHHHHHHHHHhCCC
Q 005136 642 AVKNLWKLAEEHPAGYVLLSNIYASAGR-----------WIDAMNVRKLMTEKGL 685 (712)
Q Consensus 642 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~eA~~~~~~~~~~~~ 685 (712)
.++++++++|+++.+|..+|.+|...|+ +++|.+.|++.++..+
T Consensus 63 ~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P 117 (145)
T d1zu2a1 63 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 117 (145)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence 9999999999999999999999988764 6889999999887554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=3.8e-05 Score=56.56 Aligned_cols=67 Identities=15% Similarity=-0.032 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC-------CchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 620 SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH-------PAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 620 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
......+...+.+.|++++|+..+++++++.|.+ ..++..||.++.+.|++++|+..++++++..+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~ 78 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC
Confidence 3445567778999999999999999999876554 357999999999999999999999999987643
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.49 E-value=8e-05 Score=66.77 Aligned_cols=124 Identities=9% Similarity=-0.016 Sum_probs=66.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChH
Q 005136 528 AESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLS 605 (712)
Q Consensus 528 ~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 605 (712)
.+.|++++|+..+++.++ ..| +...+..+...++..|++++|...|+...+ +.| +...+..+...+...+..+
T Consensus 7 L~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccH
Confidence 345667777777777666 344 335566666667777777777777766652 255 3444444555444444444
Q ss_pred HHHHHHHhC--CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCch
Q 005136 606 EAEDFINSM--PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAG 656 (712)
Q Consensus 606 ~A~~~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 656 (712)
++..-.... ...|+ ...+......+...|+.++|...++++.+..|+.+..
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 333222221 11222 1222223333556667777777777666666665544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.47 E-value=4e-05 Score=68.80 Aligned_cols=121 Identities=10% Similarity=0.093 Sum_probs=88.2
Q ss_pred hcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHH
Q 005136 562 CSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 638 (712)
..+.|++++|+..+++..+ ..| |...+..++..|+..|++++|...++.. ...|+ ...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~---~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 4567999999999999984 477 8899999999999999999999999998 55666 4444444444444444444
Q ss_pred HHHHHHHHhc-cCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 639 AERAVKNLWK-LAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 639 a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
+.....+... ..|++...+...+.++.+.|+.++|.+.++++.+..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 3332222221 2344455666778889999999999999999988643
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.27 E-value=0.00087 Score=55.80 Aligned_cols=55 Identities=15% Similarity=0.047 Sum_probs=26.4
Q ss_pred HHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHh
Q 005136 556 LSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINS 613 (712)
Q Consensus 556 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 613 (712)
..+..++...|++++|+..++++.. ..| +...|..++.+|.+.|+..+|++.|++
T Consensus 71 ~~la~~~~~~g~~~~Al~~~~~al~---~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~ 126 (179)
T d2ff4a2 71 TAKAEAEIACGRASAVIAELEALTF---EHPYREPLWTQLITAYYLSDRQSDALGAYRR 126 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3344444445555555555554442 244 444455555555555555555544443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.20 E-value=0.00084 Score=54.68 Aligned_cols=65 Identities=15% Similarity=0.047 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 005136 589 RHYTCVVDMLSRSGRLSEAEDFINSM--------PFEPD-----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
..|+.++.+|...|++++|...+++. ...++ ...+..+..+|...|++++|...+++++++.|+.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 45667777888888888877776654 12222 2245666777899999999999999999886654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.00016 Score=72.33 Aligned_cols=128 Identities=9% Similarity=-0.001 Sum_probs=64.9
Q ss_pred hcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHH
Q 005136 498 KSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKY 574 (712)
Q Consensus 498 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 574 (712)
..+.++.+...+....+ ++...+..+...+.+.|+.++|...+...... .| ...+..+...+...|++++|+..
T Consensus 98 a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~A~~~ 174 (497)
T d1ya0a1 98 ASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQAESY 174 (497)
T ss_dssp HHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHHHHHH
Confidence 34566677666665543 23445666667777777777777776665541 12 24566667777777778888877
Q ss_pred HHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHh
Q 005136 575 FNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-P-FEPDSNAWASLLSGCK 631 (712)
Q Consensus 575 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~ 631 (712)
|+++.. +.| +...|+.|+.++...|+..+|+..|.+. . ..|-+..+.++...+.
T Consensus 175 y~~A~~---l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 175 YRHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHH---HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 777763 366 5667777777777778877777777765 2 2455666666655543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.31 Score=46.88 Aligned_cols=113 Identities=13% Similarity=0.057 Sum_probs=51.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHH----HHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHH
Q 005136 531 GYAKESINLFEEMEKTSITPNELTI----LSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSE 606 (712)
Q Consensus 531 ~~~~~A~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 606 (712)
.+.+.|...+........ .+.... ..+.......+..+.+...+...... ..+.......+....+.+++..
T Consensus 228 ~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHH
Confidence 355666666665554321 111111 11222233344555555555544311 2233333333333445566666
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 005136 607 AEDFINSMPFEPD--SNAWASLLSGCKTYKNEQIAERAVKNLW 647 (712)
Q Consensus 607 A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 647 (712)
+...++.++..|. ..-.--+..++...|+.+.|...+..+.
T Consensus 304 ~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 6666666643222 2222333444556666666666666654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.48 E-value=0.092 Score=38.52 Aligned_cols=141 Identities=13% Similarity=0.072 Sum_probs=96.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHH
Q 005136 527 LAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSE 606 (712)
Q Consensus 527 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 606 (712)
+...|..++..+++.+.... .+..-|+.++--....-+-+...+.++.+-.-+.+.| +++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 56678889999999888773 2334444444444444556666666766653333333 333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 607 AEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 607 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
....+-.+. .........+.....+|+-+...++++.+++...-+|+++..++.+|.+.|...+|-+++.+.=+.|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 333333332 233444555666778999999999999988876667999999999999999999999999999998875
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.46 E-value=0.0035 Score=47.00 Aligned_cols=70 Identities=13% Similarity=0.079 Sum_probs=37.6
Q ss_pred CchHHHHHHHHHhhhcCC---hHHHHHHHHhC-CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 586 PNGRHYTCVVDMLSRSGR---LSEAEDFINSM-PFEPD--SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 586 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
|+..+--..+.++++... .++++.+++.+ ...|. ...+-.+.-+|.+.|++++|.+.++++++.+|+|..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 344455555555554433 34566666555 22332 234444555566666666666666666666666543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.84 E-value=0.035 Score=42.99 Aligned_cols=52 Identities=13% Similarity=0.055 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCCchhHHHHHHHHHhCCCc
Q 005136 633 YKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYAS----AGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 633 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~ 686 (712)
..|.++|.++++++.+. .++.+...|+.+|.. ..+.++|.+++++..+.|.+
T Consensus 72 ~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 72 KKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred chhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 34678888888887664 457788888888876 45788899999888877753
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.72 E-value=0.049 Score=40.61 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHhhcC---CHHHHHHHHHHHhccCCCCC-chHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 617 EPDSNAWASLLSGCKTYK---NEQIAERAVKNLWKLAEEHP-AGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 617 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
.|...+-....+++.++. +.++++.+++.+++.+|.+. ..++.|+.+|.+.|++++|+.+++++++..+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 466677777777766543 55788888888888887654 78888898999999999999999888885543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.69 E-value=1.9 Score=41.01 Aligned_cols=377 Identities=8% Similarity=0.015 Sum_probs=200.4
Q ss_pred ChHHHHHHHhhCCCCC--hhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 005136 102 NLEEAQRLFDGMPERN--EVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESG 179 (712)
Q Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 179 (712)
...+...++++-+..- .......+..+.+.++++.....+...+ .+...-.....+....|+.++|...+..+-..|
T Consensus 54 ~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 54 PAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 4455555555544321 1122233455667777776665554322 244444466667777888888887777666554
Q ss_pred CCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHH
Q 005136 180 VKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDV 259 (712)
Q Consensus 180 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~ 259 (712)
.. .+ +....++..+.+.| ..+...+-.-+......|+...|..+...+...........+..
T Consensus 133 ~~-~p----------------~~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l 194 (450)
T d1qsaa1 133 KS-QP----------------NACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISL 194 (450)
T ss_dssp SC-CC----------------THHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHH
T ss_pred CC-Cc----------------hHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHH
Confidence 22 11 12223333333333 34444444445556667888888888776655444444444444
Q ss_pred HHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHh--cCChhHHHHHHHHHHhCC-CCCCHHH-H-HHHHHHHhccCChhh
Q 005136 260 FIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQ--SGYPEEAFRLFRQMTRYS-FKPNTSC-F-SIVLSALASLKALRS 334 (712)
Q Consensus 260 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~-~~p~~~~-~-~~ll~~~~~~~~~~~ 334 (712)
......+ ........ .+......+..++.+ ..+.+.+..++....... ..++... . ..+.......+..+.
T Consensus 195 ~~~p~~~---~~~~~~~~-~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 270 (450)
T d1qsaa1 195 ANNPNTV---LTFARTTG-ATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDE 270 (450)
T ss_dssp HHCGGGH---HHHHHHSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHH
T ss_pred HhChHhH---HHHHhcCC-CChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHH
Confidence 4332222 22222222 222222222333322 356778888887765432 2222211 1 122222334456677
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCC
Q 005136 335 GMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKR 414 (712)
Q Consensus 335 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 414 (712)
+...+......+ .+.....-.+......+++..+...+..+...........--+.+++...|+.+.|...|......
T Consensus 271 a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~ 348 (450)
T d1qsaa1 271 QAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ 348 (450)
T ss_dssp HHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC
Confidence 777776665554 334444445556677788898888888875433333344455677888889999998888887654
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHH
Q 005136 415 NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNK----STFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGT 490 (712)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 490 (712)
. +|...+.+-.-...+.-... .....+.. ..-..-+..+...|....|...+..+.+. .+.....
T Consensus 349 ~--~fYG~LAa~~Lg~~~~~~~~------~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~ 417 (450)
T d1qsaa1 349 R--GFYPMVAAQRIGEEYELKID------KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQA 417 (450)
T ss_dssp C--SHHHHHHHHHTTCCCCCCCC------CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHH
T ss_pred C--ChHHHHHHHHcCCCCCCCcC------CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHH
Confidence 2 34333332211111100000 00000000 00112244566778888998888877653 2455666
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC
Q 005136 491 ALTDTYAKSGDIESSRRVFDRMPD 514 (712)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~~ 514 (712)
.+.....+.|.++.|+........
T Consensus 418 ~la~lA~~~g~~~~aI~a~~~~~~ 441 (450)
T d1qsaa1 418 QLARYAFNNQWWDLSVQATIAGKL 441 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCChhHHHHHHHHHHc
Confidence 777888889999998888776653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.37 E-value=0.17 Score=38.84 Aligned_cols=111 Identities=16% Similarity=0.118 Sum_probs=75.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhh----cCChHH
Q 005136 531 GYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSR----SGRLSE 606 (712)
Q Consensus 531 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 606 (712)
.|+++|++.|++..+.|. |. ....| +.....+.++|.+++++..+. + ++.....|+..|.. ..+.++
T Consensus 7 kd~~~A~~~~~kaa~~g~-~~--a~~~l--~~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNE-MF--GCLSL--VSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHHTTC-TT--HHHHH--HTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHCCC-hh--hhhhh--ccccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHH
Confidence 367888999998888762 22 22223 234556888999999887732 2 56666777777764 456889
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccC
Q 005136 607 AEDFINSMPFEPDSNAWASLLSGCKT----YKNEQIAERAVKNLWKLA 650 (712)
Q Consensus 607 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 650 (712)
|.++|++.-..-++.....+...|.. ..|.++|.++++++.+..
T Consensus 78 A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 78 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 99999987434455555556555544 458999999999987754
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.16 E-value=2.5 Score=30.86 Aligned_cols=61 Identities=15% Similarity=0.039 Sum_probs=41.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCC
Q 005136 421 AIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGF 482 (712)
Q Consensus 421 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 482 (712)
..++...++|+-+.-.++++.+.+. -.|++.....+..+|.+.|+..++.+++.+.-+.|.
T Consensus 91 lALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 91 KALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3455555666666667777776664 367777777778888888888888888877776664
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.34 E-value=2.7 Score=29.03 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 005136 298 EEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKI 345 (712)
Q Consensus 298 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 345 (712)
-++.+-++.+....+.|++......+.+|.+.+++..|.++++-++..
T Consensus 23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345555555555566667766677777777777777777666666544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.08 E-value=3.1 Score=28.74 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=47.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 005136 164 FSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLIT 227 (712)
Q Consensus 164 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 227 (712)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++-++... .++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 344566777777777888999999999999999999999999998877543 334556666553
|