Citrus Sinensis ID: 005225

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------
MPLRNDDVRFISSPLKIPPFRPEPPVPFFAQTLTKSKNSLSHLIYSLNESTRSTEPFTRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFGIRVDSPLGPLRLEYAFNDKQAKRFHFGVGYRN
ccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccEEEEccccccEEEEEEEEEccccHHHHHHHHHHHHHcccEEccccccccHHHHHHHHHHHHHcccEEEEEEEEEEccccEEEEEEEccccEEEEEEEEEcccccHHHHHHHcccccccEEcHHHHHHHHHHHHHHHHHcccEEEEccEEEccccEEEEEEEEEEEccEEEEEEEccccccccccccccEEEEcccccccccccHHHHHHHHHHHHcccccccEEEEEEcccccccEEEEEEEEEccccEEEEEEEEcccccccccccEEEEEEEEEccccccccEEEEEEEEccEEEEEEEEEEEccccccccEEEEEEEEEEEEcccccccccccccccEEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEccccccEEccccccccccccccccccEEEEEEEEEcccccccccEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEcccEEEEEEEEEEEEccccccccEEccccccccccccccccccEEEEEEEEEEEEEcccccEEEEEEEEEEEcccccccccccccccccccccEEEEEEEEEEcccccEEEEEEEcccccEEEEEEEEEcc
cccccccEEEEEcccccccccccccccHHHHHHHcccccHHHHccccccccccccHHHHHHHHHHHccccccccccccEEcccccccccccHHHHHHHHHHHHHHccccccEEEEEEcccccccEEEEEEcccccEEEEEEEEEEcccccHHHHHHHHHccHHHHHHccccccccHHHHHHHHHHHHHccccccEEEEcccccccEEEEEEEccccEEEEEEEEccccccHHHHHHHHHcccccEccHHHHHHHHHHHHHHHHHcccEEEEEccccccccEEEEEEEEEEEEcEEEEEEEEcccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccEEEEEccccccccEEEEEEEEEEccccEEEEEEEEEccccccccccEEEEEEEEEccccccccEEEEEEEEccEEEEEEEEEccccEccccccccEEEEEEEccEcccccccccccccccEEEEEcccEEEEEEcccccEEEEEEEEEEEEEccccccccccccccccccccccccccEEEEEEccccccccccccEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEccccEEEEEEEcccccccccccHHEEccccccEEcccccccccccEEEEEEEEEEEcccccEEEEEEEEcccccccccccccccccccccccccEEEEEEEEEEcccccEEEEEEEcccccEEEEEEccccc
mplrnddvrfissplkippfrpeppvpffaQTLTKSKNSLSHLIYSlnestrstepFTRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLslnqssaefpaqselsTQLQqkaqqphsvsrsdeERVLISEVLVrnkdgeelerkDLETEALTALKACRANSALTVREVQEDVHRIIDsgyfcscmpvavdtrdGIRLVfqvepnqefhglvceganvlptkfvedafrdgygkvvNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRfldrktgeptkgktrpeTILRQLTTKKGQVYSMLQGKRDVETVLTMGImedvsiipqpagdtgkvdLIMNVverpsggfsagggissgitsgplsglIGSFAYshrnvfgrnqKLNIslergqidsifrinytdpwiegddkrtsrtimvqnsrtpgthvhgnqpdnssltigrvtagmefsrpirpkwsgtvglifqhsgardekgnpiikdfysspltasgktnDEMLIAKFEsvytgsgdqgsSMFVFNMeqglpvwpewlffnRVNARARKGVEIGPARLLLSLsgghvvgnfspheafaiggtnsvrgyeegavgsgrsyvvgsgeisfpmlgpveGVIFsdygtdlgsgpsvpgdpagarlkpgsgygygfgirvdsplgplrleyafndkqakrfhfgvgyrn
mplrnddvrfissplkippfrpePPVPFFAQTLTKSKNSLSHLIYSLnestrstepFTRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLSLNQSSAEFPAQSELSTQLQQKaqqphsvsrsdeervlisevlvrnkdgeelerkdlETEALTALkacransaltvreVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAfrdgygkvvnirrlDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAevnnisirfldrktgeptkgktrpetilrqlttkkgqvysmlqgKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRinytdpwiegddkrtsRTIMVQnsrtpgthvhgnqpdnssLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHsgardekgnpiIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFGIRVDSPLGPLRLEYAFNDKQAKRFHFGVGYRN
MPLRNDDVRFISSPLKIppfrpeppvpffAQTLTKSKNSLSHLIYSLNESTRSTEPFTRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPsggfsagggissgitsgplsgligsFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARlllslsggHVVGNFSPHEAFAIGGTNSVRGYEEgavgsgrsyvvgsgEISFPMLGPVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFGIRVDSPLGPLRLEYAFNDKQAKRFHFGVGYRN
****************************F***********SHLIYSL**********TRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASL************************************************************ALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLD****************LRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVV***********************GLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEG********************************IGRVTAGMEFSRPIRPKWSGTVGLIFQHSG*******PIIKDFYS***********EMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDL******************SGYGYGFGIRVDSPLGPLRLEYAFNDKQAKRFHFGVG***
**********************************************************************************************************************************RSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFGIRVDSPLGPLRLEYAFNDKQAKRFHFGVGYR*
MPLRNDDVRFISSPLKIPPFRPEPPVPFFAQTLTKSKNSLSHLIYSLNESTRSTEPFTRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLSLNQ******************************ERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFGIRVDSPLGPLRLEYAFNDKQAKRFHFGVGYRN
**L*NDDVRFISSPLKIPPFRPEPPVPFFAQTLTKSKNSLSHLIYSLNESTRSTEPFTRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFGIRVDSPLGPLRLEYAFNDKQAKRFHFGVGY**
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooo
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MPLRNDDVRFISSPLKIPPFRPEPPVPFFAQTLTKSKNSLSHLIYSLNESTRSTEPFTRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFGIRVDSPLGPLRLEYAFNDKQAKRFHFGVGYRN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query707 2.2.26 [Sep-21-2011]
Q9C5J8732 Outer envelope protein 80 yes no 0.992 0.959 0.746 0.0
A2X208665 Outer envelope protein 80 N/A no 0.828 0.881 0.787 0.0
Q6H7M7665 Outer envelope protein 80 yes no 0.811 0.863 0.8 0.0
Q43715809 Protein TOC75, chloroplas N/A no 0.719 0.629 0.255 2e-29
Q9STE8818 Protein TOC75-3, chloropl no no 0.714 0.617 0.250 1e-25
Q84Q83817 Protein TOC75, chloroplas no no 0.613 0.531 0.250 2e-24
P0C891158 Outer envelope protein 80 N/A no 0.166 0.746 0.328 3e-17
Q5IZC8396 Protein TOC75-4, chloropl no no 0.196 0.351 0.337 1e-12
Q9K1H0797 Outer membrane protein as yes no 0.510 0.452 0.238 2e-08
>sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana GN=OEP80 PE=1 SV=1 Back     alignment and function desciption
 Score = 1098 bits (2841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/737 (74%), Positives = 610/737 (82%), Gaps = 35/737 (4%)

Query: 1   MPLRNDDVRFISSPLKIPPFRPEPPVPF----------FAQTLTKSKNSLSHLIYSLNE- 49
           M   NDDVRF SS ++I    P+               F   L+ ++NSL+ ++ SL   
Sbjct: 1   MHCHNDDVRFSSSSIRIHSPSPKEQHSLLTNLQSCSKTFVSHLSNTRNSLNQMLQSLKNR 60

Query: 50  ------STRSTEPFTRKLQSFAEHLYGKSVRICSTCLSMTG---------AVDTL--VNF 92
                 S R     T+ L S  + + GKS  I  + +  T           V+T+  ++ 
Sbjct: 61  HTPPPRSVRRPNLPTQMLNSVTQLMIGKSSPISLSLIQSTQFNWSESRDENVETIRGLSS 120

Query: 93  PLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQP--HSVSRSDEERVLISEVLVRNKDGE 150
           PLLC ASLSL +     P +S  S + +   QQ   HSVSR+ EERVLISEVLVR KDGE
Sbjct: 121 PLLCCASLSLTR-----PNESTQSVEGKDTVQQQKGHSVSRNAEERVLISEVLVRTKDGE 175

Query: 151 ELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVF 210
           ELERKDLE EAL ALKACRANSALT+REVQEDVHRII+SGYFCSC PVAVDTRDGIRL+F
Sbjct: 176 ELERKDLEMEALAALKACRANSALTIREVQEDVHRIIESGYFCSCTPVAVDTRDGIRLMF 235

Query: 211 QVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGM 270
           QVEPNQEF GLVCE ANVLP+KF+ +AFRDG+GKV+NI+RL+E ITSINGWYMERGLFG+
Sbjct: 236 QVEPNQEFRGLVCENANVLPSKFIHEAFRDGFGKVINIKRLEEAITSINGWYMERGLFGI 295

Query: 271 VSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSM 330
           VS ++ LSGGI+RLQVAEAEVNNISIRFLDRKTGEPTKGKT PETILRQLTTKKGQVYSM
Sbjct: 296 VSDIDTLSGGIVRLQVAEAEVNNISIRFLDRKTGEPTKGKTSPETILRQLTTKKGQVYSM 355

Query: 331 LQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGP 390
           LQGKRDV+TVL MGIMEDVSIIPQPAGD+GKVDLIMN VERPSGGFSAGGGISSGITSGP
Sbjct: 356 LQGKRDVDTVLAMGIMEDVSIIPQPAGDSGKVDLIMNCVERPSGGFSAGGGISSGITSGP 415

Query: 391 LSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNS 450
           LSGLIGSFAYSHRN+FGRNQKLN+SLERGQIDSIFRINYTDPWIEGDDKRTSR+IMVQNS
Sbjct: 416 LSGLIGSFAYSHRNLFGRNQKLNVSLERGQIDSIFRINYTDPWIEGDDKRTSRSIMVQNS 475

Query: 451 RTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKD 510
           RTPG  VHGNQPDNSSLTIGRVTAG+E+SRP RPKW+GT GLIFQH+GARDE+GNPIIKD
Sbjct: 476 RTPGNLVHGNQPDNSSLTIGRVTAGVEYSRPFRPKWNGTAGLIFQHAGARDEQGNPIIKD 535

Query: 511 FYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARA 570
           FYSSPLTASGK +DE ++AK ES+YTGSGDQGS+MF FNMEQGLPV PEWL FNRV  RA
Sbjct: 536 FYSSPLTASGKPHDETMLAKLESIYTGSGDQGSTMFAFNMEQGLPVLPEWLCFNRVTGRA 595

Query: 571 RKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEIS 630
           RKG+ IGPAR L SLSGGHVVG FSPHEAF IGGTNSVRGYEEGAVGSGRSYVVGSGE+S
Sbjct: 596 RKGIHIGPARFLFSLSGGHVVGKFSPHEAFVIGGTNSVRGYEEGAVGSGRSYVVGSGELS 655

Query: 631 FPMLGPVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFGIRVDSPLGPLRLEYA 690
           FP+ GPVEGVIF+DYGTD+GSG +VPGDPAGARLKPGSGYGYG G+RVDSPLGPLRLEYA
Sbjct: 656 FPVRGPVEGVIFTDYGTDMGSGSTVPGDPAGARLKPGSGYGYGLGVRVDSPLGPLRLEYA 715

Query: 691 FNDKQAKRFHFGVGYRN 707
           FND+ A RFHFGVG RN
Sbjct: 716 FNDQHAGRFHFGVGLRN 732
Plays an essential role during early stages of plastid development.
Arabidopsis thaliana (taxid: 3702)
>sp|A2X208|OEP80_ORYSI Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp. indica GN=OEP80 PE=3 SV=1 Back     alignment and function description
>sp|Q6H7M7|OEP80_ORYSJ Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp. japonica GN=OEP80 PE=3 SV=2 Back     alignment and function description
>sp|Q43715|TOC75_PEA Protein TOC75, chloroplastic OS=Pisum sativum GN=TOC75 PE=1 SV=1 Back     alignment and function description
>sp|Q9STE8|TC753_ARATH Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3 PE=1 SV=1 Back     alignment and function description
>sp|Q84Q83|TOC75_ORYSJ Protein TOC75, chloroplastic OS=Oryza sativa subsp. japonica GN=TOC75 PE=2 SV=2 Back     alignment and function description
>sp|P0C891|OEP80_PEA Outer envelope protein 80, chloroplastic (Fragments) OS=Pisum sativum GN=OEP80 PE=1 SV=1 Back     alignment and function description
>sp|Q5IZC8|TC754_ARATH Protein TOC75-4, chloroplastic OS=Arabidopsis thaliana GN=TOC75-4 PE=2 SV=1 Back     alignment and function description
>sp|Q9K1H0|BAMA_NEIMB Outer membrane protein assembly factor BamA OS=Neisseria meningitidis serogroup B (strain MC58) GN=bamA PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query707
255544822700 sorting and assembly machinery (sam50) p 0.983 0.992 0.808 0.0
18419973732 outer envelope protein [Arabidopsis thal 0.992 0.959 0.746 0.0
297808025732 hypothetical protein ARALYDRAFT_909999 [ 0.985 0.952 0.756 0.0
356547291677 PREDICTED: outer envelope protein of 80 0.953 0.995 0.759 0.0
356557629677 PREDICTED: outer envelope protein of 80 0.950 0.992 0.760 0.0
224075788682 predicted protein [Populus trichocarpa] 0.923 0.957 0.759 0.0
359478392673 PREDICTED: outer envelope protein of 80 0.940 0.988 0.771 0.0
357454321672 Outer envelope protein of 80 kDa [Medica 0.944 0.994 0.753 0.0
224053360512 predicted protein [Populus trichocarpa] 0.724 1.0 0.910 0.0
449448734757 PREDICTED: outer envelope protein 80, ch 0.858 0.801 0.787 0.0
>gi|255544822|ref|XP_002513472.1| sorting and assembly machinery (sam50) protein, putative [Ricinus communis] gi|223547380|gb|EEF48875.1| sorting and assembly machinery (sam50) protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1132 bits (2929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/712 (80%), Positives = 620/712 (87%), Gaps = 17/712 (2%)

Query: 1   MPLRNDDVRFISSPLKIPPFRPEPPVPFFAQTLTKSKNSLSHLIYSLNESTRSTEPFTRK 60
           MP +ND VRF SS LKIP   P       A  L+ +K S ++ I SL   TRS    +R 
Sbjct: 1   MP-QNDTVRFTSSSLKIPLLPPPQQQ-QQAPQLSYTKISFTNFIDSL--ITRSKIHISRS 56

Query: 61  LQSFAEHLYGKSVRICSTCLSMTGAVDTLVN-----FPLLCSASLSLNQSSAEFPAQSEL 115
           + S  +        +C   LS+  + DT+++      P+LCSASLSL Q     P +SE 
Sbjct: 57  VNSPRKLTL---PLLCFASLSLPQSKDTVISESHTQSPILCSASLSLTQ-----PGESEN 108

Query: 116 STQLQQKAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALT 175
               Q+ +    S SR DEERVLISEVLVRNKDGEELERKDLE EA+ ALKACRANSALT
Sbjct: 109 IVTQQKGSGGGLSGSRHDEERVLISEVLVRNKDGEELERKDLEAEAVAALKACRANSALT 168

Query: 176 VREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVE 235
           VREVQEDVHRIIDSGYFCSC PVAVDTRDGIRLVFQVEPNQEFHGLVCEGA+VLPTKF++
Sbjct: 169 VREVQEDVHRIIDSGYFCSCTPVAVDTRDGIRLVFQVEPNQEFHGLVCEGASVLPTKFLQ 228

Query: 236 DAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNIS 295
           DAFR+GYGKVVNIR LD+VITSINGWYMERGLFG+VSGVEILSGGI+RLQVAEAEVNNIS
Sbjct: 229 DAFREGYGKVVNIRHLDDVITSINGWYMERGLFGLVSGVEILSGGILRLQVAEAEVNNIS 288

Query: 296 IRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQP 355
           IRFLDRKTGEPTKGKT+PETILRQLTTKKGQVYSMLQGKRDV+TVLTMGIMEDVSIIPQP
Sbjct: 289 IRFLDRKTGEPTKGKTKPETILRQLTTKKGQVYSMLQGKRDVDTVLTMGIMEDVSIIPQP 348

Query: 356 AGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNIS 415
           AGDTGKVDL+MNVVERPSGGFSAGGGISSGITSGPLSGLIGSF YSHRNVFGRNQKLNIS
Sbjct: 349 AGDTGKVDLVMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFTYSHRNVFGRNQKLNIS 408

Query: 416 LERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAG 475
           LERGQIDSIFRINYTDPWI+GDDKRTSRTIMVQNSRTPG  VH  QP NSSLTIGRVTAG
Sbjct: 409 LERGQIDSIFRINYTDPWIQGDDKRTSRTIMVQNSRTPGNLVHSYQPGNSSLTIGRVTAG 468

Query: 476 MEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVY 535
           +EFSRP+RPKWSGT GLIFQH+GA DEKGNPIIKD YSSPLTASGKT+D ML+AKFESVY
Sbjct: 469 VEFSRPLRPKWSGTAGLIFQHAGAHDEKGNPIIKDHYSSPLTASGKTHDNMLLAKFESVY 528

Query: 536 TGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFS 595
           TGSGD GSSMFV N+EQGLP+WPEWLFFNRVNARARKGVEIGPA  LLSLSGGHVVGNFS
Sbjct: 529 TGSGDHGSSMFVLNVEQGLPLWPEWLFFNRVNARARKGVEIGPALFLLSLSGGHVVGNFS 588

Query: 596 PHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSV 655
           PHEAFAIGGTNSVRGYEEGAVGS RSY VGSGEISFP++GPVEGV+F+DYGTDLGSGP+V
Sbjct: 589 PHEAFAIGGTNSVRGYEEGAVGSARSYAVGSGEISFPLMGPVEGVLFADYGTDLGSGPTV 648

Query: 656 PGDPAGARLKPGSGYGYGFGIRVDSPLGPLRLEYAFNDKQAKRFHFGVGYRN 707
           PGDPAGARLKPGSGYGYGFG+RVDSPLGPLRLEYAFNDK AKRFHFGVG+RN
Sbjct: 649 PGDPAGARLKPGSGYGYGFGMRVDSPLGPLRLEYAFNDKHAKRFHFGVGHRN 700

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|18419973|ref|NP_568378.1| outer envelope protein [Arabidopsis thaliana] gi|75168961|sp|Q9C5J8.1|OEP80_ARATH RecName: Full=Outer envelope protein 80, chloroplastic; AltName: Full=Chloroplastic outer envelope protein of 80 kDa; Short=AtOEP80; AltName: Full=Protein TOC75-V; Short=AtToc75-V gi|13430586|gb|AAK25915.1|AF360205_1 unknown protein [Arabidopsis thaliana] gi|14532858|gb|AAK64111.1| unknown protein [Arabidopsis thaliana] gi|332005348|gb|AED92731.1| outer envelope protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297808025|ref|XP_002871896.1| hypothetical protein ARALYDRAFT_909999 [Arabidopsis lyrata subsp. lyrata] gi|297317733|gb|EFH48155.1| hypothetical protein ARALYDRAFT_909999 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356547291|ref|XP_003542049.1| PREDICTED: outer envelope protein of 80 kDa, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356557629|ref|XP_003547118.1| PREDICTED: outer envelope protein of 80 kDa, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|224075788|ref|XP_002304768.1| predicted protein [Populus trichocarpa] gi|222842200|gb|EEE79747.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359478392|ref|XP_002285507.2| PREDICTED: outer envelope protein of 80 kDa, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|357454321|ref|XP_003597441.1| Outer envelope protein of 80 kDa [Medicago truncatula] gi|355486489|gb|AES67692.1| Outer envelope protein of 80 kDa [Medicago truncatula] Back     alignment and taxonomy information
>gi|224053360|ref|XP_002297781.1| predicted protein [Populus trichocarpa] gi|222845039|gb|EEE82586.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449448734|ref|XP_004142120.1| PREDICTED: outer envelope protein 80, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query707
TAIR|locus:2183164732 OEP80 "outer envelope protein 0.950 0.918 0.714 1.4e-262
TAIR|locus:2081423362 AT3G44160 "AT3G44160" [Arabido 0.422 0.825 0.386 1.6e-54
TAIR|locus:2102767818 TOC75-III "translocon at the o 0.261 0.226 0.287 1.6e-18
UNIPROTKB|Q74AT3765 yaeT "Outer membrane protein a 0.214 0.198 0.230 1.4e-10
TIGR_CMR|GSU_2268765 GSU_2268 "outer membrane prote 0.214 0.198 0.230 1.4e-10
TAIR|locus:2122328396 TOC75-IV "translocon at the ou 0.195 0.348 0.307 1.1e-08
TAIR|locus:2007606399 TOC75-I "translocon outer memb 0.123 0.218 0.280 0.00054
TAIR|locus:2183164 OEP80 "outer envelope protein of 80 kDa" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2491 (881.9 bits), Expect = 1.4e-262, Sum P(2) = 1.4e-262
 Identities = 495/693 (71%), Positives = 551/693 (79%)

Query:    33 LTKSKNSLSHLIYSL-NEST---RSTE-PF--TRKLQSFAEHLYGKSVRICSTCLSMTGA 85
             L+ ++NSL+ ++ SL N  T   RS   P   T+ L S  + + GKS  I  + +  T  
Sbjct:    43 LSNTRNSLNQMLQSLKNRHTPPPRSVRRPNLPTQMLNSVTQLMIGKSSPISLSLIQSTQF 102

Query:    86 ---------VDTL--VNFPLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQPHSVSRSDE 134
                      V+T+  ++ PLLC ASLSL + +    +     T  QQK    HSVSR+ E
Sbjct:   103 NWSESRDENVETIRGLSSPLLCCASLSLTRPNESTQSVEGKDTVQQQKG---HSVSRNAE 159

Query:   135 ERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCS 194
             ERVLISEVLVR KDGEELERKDLE EAL ALKACRANSALT+REVQEDVHRII+SGYFCS
Sbjct:   160 ERVLISEVLVRTKDGEELERKDLEMEALAALKACRANSALTIREVQEDVHRIIESGYFCS 219

Query:   195 CMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEV 254
             C PVAVDTRDGIRL+FQVEPNQEF GLVCE ANVLP+KF+ +AFRDG+GKV+NI+RL+E 
Sbjct:   220 CTPVAVDTRDGIRLMFQVEPNQEFRGLVCENANVLPSKFIHEAFRDGFGKVINIKRLEEA 279

Query:   255 ITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPE 314
             ITSINGWYMERGLFG+VS ++ LSGGI+RLQVAEAEVNNISIRFLDRKTGEPTKGKT PE
Sbjct:   280 ITSINGWYMERGLFGIVSDIDTLSGGIVRLQVAEAEVNNISIRFLDRKTGEPTKGKTSPE 339

Query:   315 TILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPXX 374
             TILRQLTTKKGQVYSMLQGKRDV+TVL MGIMEDVSIIPQPAGD+GKVDLIMN VERP  
Sbjct:   340 TILRQLTTKKGQVYSMLQGKRDVDTVLAMGIMEDVSIIPQPAGDSGKVDLIMNCVERPSG 399

Query:   375 XXXXXXXXXXXXXXXXXXXXXXXFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWI 434
                                    FAYSHRN+FGRNQKLN+SLERGQIDSIFRINYTDPWI
Sbjct:   400 GFSAGGGISSGITSGPLSGLIGSFAYSHRNLFGRNQKLNVSLERGQIDSIFRINYTDPWI 459

Query:   435 EGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIF 494
             EGDDKRTSR+IMVQNSRTPG  VHGNQPDNSSLTIGRVTAG+E+SRP RPKW+GT GLIF
Sbjct:   460 EGDDKRTSRSIMVQNSRTPGNLVHGNQPDNSSLTIGRVTAGVEYSRPFRPKWNGTAGLIF 519

Query:   495 QHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGL 554
             QH+GARDE+GNPIIKDFYSSPLTASGK +DE ++AK ES+YTGSGDQGS+MF FNMEQGL
Sbjct:   520 QHAGARDEQGNPIIKDFYSSPLTASGKPHDETMLAKLESIYTGSGDQGSTMFAFNMEQGL 579

Query:   555 PVWPEWLFFNRVNARARKGVEIGPARXXXXXXXXHVVGNFSPHEAFAIGGTNSVRGYEEX 614
             PV PEWL FNRV  RARKG+ IGPAR        HVVG FSPHEAF IGGTNSVRGYEE 
Sbjct:   580 PVLPEWLCFNRVTGRARKGIHIGPARFLFSLSGGHVVGKFSPHEAFVIGGTNSVRGYEEG 639

Query:   615 XXXXXXXXXXXXXEISFPMLGPVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGF 674
                          E+SFP+ GPVEGVIF+DYGTD+GSG +VPGDPAGARLKPGSGYGYG 
Sbjct:   640 AVGSGRSYVVGSGELSFPVRGPVEGVIFTDYGTDMGSGSTVPGDPAGARLKPGSGYGYGL 699

Query:   675 GIRVDSPLGPLRLEYAFNDKQAKRFHFGVGYRN 707
             G+RVDSPLGPLRLEYAFND+ A RFHFGVG RN
Sbjct:   700 GVRVDSPLGPLRLEYAFNDQHAGRFHFGVGLRN 732
GO:0003674 "molecular_function" evidence=ND
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0019867 "outer membrane" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009658 "chloroplast organization" evidence=IMP
GO:0010207 "photosystem II assembly" evidence=RCA
TAIR|locus:2081423 AT3G44160 "AT3G44160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102767 TOC75-III "translocon at the outer envelope membrane of chloroplasts 75-III" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q74AT3 yaeT "Outer membrane protein assembly factor BamA" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2268 GSU_2268 "outer membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TAIR|locus:2122328 TOC75-IV "translocon at the outer envelope membrane of chloroplasts 75-IV" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007606 TOC75-I "translocon outer membrane complex 75-I" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A2X208OEP80_ORYSINo assigned EC number0.78700.82880.8812N/Ano
Q6H7M7OEP80_ORYSJNo assigned EC number0.80.81180.8631yesno
Q9C5J8OEP80_ARATHNo assigned EC number0.74620.99290.9590yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
OEP80
OEP80 (OUTER ENVELOPE PROTEIN OF 80 KDA); AtOEP80 is paralog to the chloroplastic protein translocation channel Toc75 ; Plays an essential role during early stages of plastid development (732 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
TIC110
TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110); Encodes a protein thoug [...] (1016 aa)
   •• • 0.999
TOC34
TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34); GTP binding; Outer membra [...] (313 aa)
      • 0.998
TOC159
TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159); transmembrane receptor; [...] (1503 aa)
      • 0.992
TIC55
TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55); 2 iron, 2 sulfur cluster [...] (539 aa)
    • • 0.986
TOC33
TOC33 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33); GTP binding / GTPase/ pro [...] (297 aa)
      • 0.966
TIC20
TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20); Tic20 is believed to func [...] (274 aa)
      • 0.962
TIC40
TIC40; chloroplast protein import (Tic40) (447 aa)
      • 0.927
TOC120
ATTOC120; GTP binding; component of TOC complex, plastid protein import machinery. ; GTPase inv [...] (1089 aa)
      • 0.921
TOC132
TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132); transmembrane recept [...] (1206 aa)
      • 0.921
ATOEP16-1
ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1); P-P-bond-hydrolysis-driven protein transmembra [...] (148 aa)
      • 0.879

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query707
TIGR00992718 TIGR00992, 3a0901s03IAP75, chloroplast envelope pr 2e-68
pfam01103317 pfam01103, Bac_surface_Ag, Surface antigen 4e-56
COG4775766 COG4775, COG4775, Outer membrane protein/protectiv 4e-55
TIGR03303741 TIGR03303, OM_YaeT, outer membrane protein assembl 1e-31
PLN03138796 PLN03138, PLN03138, Protein TOC75; Provisional 8e-24
COG0729594 COG0729, COG0729, Outer membrane protein [Cell env 1e-14
COG2831554 COG2831, FhaC, Hemolysin activation/secretion prot 6e-05
pfam0724478 pfam07244, Surf_Ag_VNR, Surface antigen variable n 2e-04
>gnl|CDD|130065 TIGR00992, 3a0901s03IAP75, chloroplast envelope protein translocase, IAP75 family Back     alignment and domain information 
 Score =  237 bits (607), Expect = 2e-68
 Identities = 148/625 (23%), Positives = 245/625 (39%), Gaps = 72/625 (11%)

Query: 138 LISEVLVRNKDGEELERKDLETEALTALKACRANSALTVR-EVQEDVHRIIDSGYFCSCM 196
           L  E+ V    G   E+ D E +          +  L       E V  I D     +  
Sbjct: 109 LQKELEVLATCGM-FEKVDYEGKT-------TQDGRLGTTISFAESVWAIADRFRCINVG 160

Query: 197 PVAVDTRDGIRLVFQVEPNQEFHGL--------VCEGAN-VLPTKFVEDAFRDGYG-KVV 246
            +       + +  +V+   EF           + E    +LP + V++ F   YG  +V
Sbjct: 161 LMPQSKPLEMDVDMEVKEKPEFTRRLEIRYKRRIAEARPCLLPQEVVDETFGMLYGQGIV 220

Query: 247 NIRRLDEVITSINGWYMERGL-FGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGE 305
           + R L E+   +  WY   G     V     L+   +  +V E ++ N+ I+F D K G 
Sbjct: 221 SARLLQEIRDRVQEWYHNEGYACAQVVNFGNLNTDEVVCEVVEGDITNLQIQFFD-KLGN 279

Query: 306 PTKGKTRPETILRQLTT--KKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVD 363
             +G TR   + R+L    K G V+++  GK  ++ + ++G+  ++ + P+P  +  + +
Sbjct: 280 VVEGNTRDPVVTRELPKQLKPGDVFNIEAGKTALQNINSLGLFSNIEVNPRP-DEMNEGE 338

Query: 364 LIMNV----VERPSGGFSAGGGISSGITSGPLS---GLIGSFAYSHRNVFGRNQKLNISL 416
           +I+ +    +E+ S   S    I  G    P        G+  + HRN+ G N+ L  S+
Sbjct: 339 IIVEIKLKELEQKSAEVSTEWSIVPGRGGRPTLASSQPGGTITFEHRNLQGLNRSLGGSV 398

Query: 417 ERG-----QIDSIFRINYTDPWIEGDD--KRTSRTIMVQNSRTPGTHVHGNQPDNS--SL 467
                   Q D +F++ YT P+++G D  +  + T    NSR       G    N   S+
Sbjct: 399 TTSNFLNPQDDLLFKVEYTHPYLDGVDNPRNRTYTASCFNSRKLSPVFTGGPGVNEVPSI 458

Query: 468 TIGRVTAGMEFSRPIR------PKWSGTVGLIFQHS------GARDEKGNPIIKDFYSSP 515
            + R       +                       S      G R     PI       P
Sbjct: 459 WVDRAGVKANITENFARQSKFTYGLVMEEIFTRDESRHINANGQRSLPSGPI--SADGPP 516

Query: 516 LTASGKTNDEMLIAKF----ESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARAR 571
            T SG   D M   +     ++    +G    S   F ++QGL V   + FFNR      
Sbjct: 517 TTLSGTGVDRMAFLQANITRDNTNFVNGPTVGSRVRFQVDQGLGVGSGFPFFNRHQLTYT 576

Query: 572 K-----GVEIG-----PARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRS 621
           K      VE+G     P  L+L    G  VG+   ++AF +GG  SVRGY  G +G+ R+
Sbjct: 577 KFIQLNWVELGAGKSPPPVLVLHGHYGGCVGDLPSYDAFILGGPYSVRGYNMGELGAARN 636

Query: 622 YVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFGIRVDSP 681
               + EI  P+        F ++G+DLGS   V G+P     +PG G  YG G+++   
Sbjct: 637 IFEATAEIRIPIKATH-VYAFVEHGSDLGSSKDVKGNPTIVYRRPGQGSSYGAGVKLGLV 695

Query: 682 LGPLRLEYAFNDKQAKRFHFGVGYR 706
                +++   ++      F  G R
Sbjct: 696 RAEYAVDH---NEGTGAIFFRFGER 717

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein [Transport and binding proteins, Amino acids, peptides and amines]. Length = 718
>gnl|CDD|216300 pfam01103, Bac_surface_Ag, Surface antigen Back     alignment and domain information
>gnl|CDD|227116 COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|234165 TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein Back     alignment and domain information
>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional Back     alignment and domain information
>gnl|CDD|223801 COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|225387 COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|219346 pfam07244, Surf_Ag_VNR, Surface antigen variable number repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 707
PLN03138796 Protein TOC75; Provisional 100.0
TIGR00992718 3a0901s03IAP75 chloroplast envelope protein transl 100.0
COG4775766 Outer membrane protein/protective antigen OMA87 [C 100.0
PRK11067803 outer membrane protein assembly factor YaeT; Provi 100.0
TIGR03303741 OM_YaeT outer membrane protein assembly complex, Y 100.0
COG0729594 Outer membrane protein [Cell envelope biogenesis, 100.0
COG2831554 FhaC Hemolysin activation/secretion protein [Intra 100.0
PF01103323 Bac_surface_Ag: Surface antigen; InterPro: IPR0001 100.0
KOG2602457 consensus Predicted cell surface protein homologou 99.92
TIGR03303741 OM_YaeT outer membrane protein assembly complex, Y 99.91
PRK11067 803 outer membrane protein assembly factor YaeT; Provi 99.91
COG4775766 Outer membrane protein/protective antigen OMA87 [C 99.9
PF03865404 ShlB: Haemolysin secretion/activation protein ShlB 99.9
PF0724478 Surf_Ag_VNR: Surface antigen variable number repea 98.77
PF0724478 Surf_Ag_VNR: Surface antigen variable number repea 98.74
PLN03138796 Protein TOC75; Provisional 98.73
PF0847976 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013 98.62
TIGR00992718 3a0901s03IAP75 chloroplast envelope protein transl 98.55
COG2831554 FhaC Hemolysin activation/secretion protein [Intra 98.43
COG0729594 Outer membrane protein [Cell envelope biogenesis, 97.45
PF0847976 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013 96.47
PF0847869 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013 85.24
>PLN03138 Protein TOC75; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.6e-68  Score=600.78  Aligned_cols=552  Identities=22%  Similarity=0.371  Sum_probs=454.5

Q ss_pred             cCcceEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHHHHcCCCceeeeeEEe--CCCcEEEEEE
Q 005225          134 EERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVD--TRDGIRLVFQ  211 (707)
Q Consensus       134 ~e~~~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l~~~GYf~a~v~~~v~--~~~~v~l~~~  211 (707)
                      -.+.+|++|.|.|  -+.-....+++.+.+++ .+++|..|+..+|++|+++|++.|||+ .|.+.+.  .++.+.|+|.
T Consensus       145 ~~~~~vs~v~~~~--~~~~~~~~~e~~l~~~i-~~kpG~v~trsqLq~dv~~I~~tG~F~-~V~~~v~~~~dg~v~V~~~  220 (796)
T PLN03138        145 FKRYKVSEIEFFD--RRRNTTVGTEDSFFEMV-TLRPGGVYTKAQLQKELETLASCGMFE-KVDLEGKTKPDGTLGLTIS  220 (796)
T ss_pred             cceEEEEEEEEec--cccCCCcchHHHHHHHH-hcCCCCccCHHHHHHHHHHHHhcCCce-EEEEEEEeCCCCeEEEEEE
Confidence            3567899999987  22222233444444455 699999999999999999999999999 8887653  5677999999


Q ss_pred             EeeCCc--eEEEE------------EecCcCCChhHHHHHhcCCC-----------------------------CcccCH
Q 005225          212 VEPNQE--FHGLV------------CEGANVLPTKFVEDAFRDGY-----------------------------GKVVNI  248 (707)
Q Consensus       212 V~EG~~--~~~I~------------~~G~~~~~~~~L~~~~~~~~-----------------------------g~~~~~  248 (707)
                      |+||+.  +++|+            |+||+.+++++|++.|..++                             ...|+.
T Consensus       221 i~Eg~~~~I~~I~~i~~~~~~~~~~~~GN~~fs~~el~~~~~~~e~~~~~~~~~a~~~~Lp~~v~~e~f~~~~~~gklN~  300 (796)
T PLN03138        221 FTESTWQSADSFRCINVGLMSQSKPIEMDEDMTDKEKMEYYRSQEKDYKRRIRKARPCLLPKSVRREVLGMLRDQGKVSA  300 (796)
T ss_pred             EEeCCceeeeeeeecccccccccceeeCCcccCHHHHHHHhhccccccccccccccccccchHHHHHHHhhhccCCcCCH
Confidence            999987  44888            99999999999888876643                             125999


Q ss_pred             HHHHHHHHHHHHHHHhCCc-eeEeeeEEEeeCcEEEEEEeeeEEEEEEEEeccccCCCCCCCCCCHHHHHhhcc--cCCC
Q 005225          249 RRLDEVITSINGWYMERGL-FGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLT--TKKG  325 (707)
Q Consensus       249 ~~l~~~~~~I~~~y~~~GY-~a~V~~~~~~~~~~v~i~I~eg~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~--l~~G  325 (707)
                      ++|++++++|+++|.++|| +++|.+....+++.|++.|.||.+..|+|++.+ +.|+.+.++|++.+|+|+|+  +++|
T Consensus       301 e~Lq~die~I~~~Y~d~GYafa~V~~~~~id~g~Vtl~V~EG~i~~I~V~~~d-rig~~i~GNTrD~VIRREL~~~lkeG  379 (796)
T PLN03138        301 RLLQRIRDRVQKWYHDEGYACAQVVNFGNLNTNEVVCEVVEGDITKVVIQFQD-KLGNVVEGNTQLPIIDRELPKQLRQG  379 (796)
T ss_pred             HHHHHHHHHHHHHHHhCCCceEEEecccccCCceEEEEEecccEEEEEEEecc-cccccccCCccCeEEeeecccccCCC
Confidence            9999999999999999999 799998776677889999999999999987544 23433345689999999997  5999


Q ss_pred             CccchhhHHHHHHHHHhCCCCccceeeeccC-CCCCeEEEEEEEEE--cCCceEEEeeeeecCcc--CC-CccceEEEEE
Q 005225          326 QVYSMLQGKRDVETVLTMGIMEDVSIIPQPA-GDTGKVDLIMNVVE--RPSGGFSAGGGISSGIT--SG-PLSGLIGSFA  399 (707)
Q Consensus       326 ~~~~~~~l~~~~~~L~~~G~F~~V~i~~~~~-~~~~~vdl~i~V~E--~~~~~~~~g~gyss~~~--~g-~~~g~~~~~~  399 (707)
                      ++||..++++++++|+++|||++|++.+.|. ..++.++|.|+|+|  .++..++++++|+....  .+ ...++.+.++
T Consensus       380 d~fN~~~l~~slqRL~~LGlFedV~V~~~Pg~~~p~~VdL~V~VkE~e~~t~~ls~g~g~~~G~g~~Psl~S~g~~Gtvs  459 (796)
T PLN03138        380 HIFNIEAGKQALRNINSLALFSNIEVNPRPDEKNEGGIVVEIKLKELEPKSAEVSTEWSIVPGRGGRPTLASIQPGGTVS  459 (796)
T ss_pred             cccCHHHHHHHHHHHHhCCCCceeEEEeccCCCCCCeEEEEEEEEEccCCceeEecccccccccCCCCccccccceeEEE
Confidence            9999999999999999999999999999886 46899999999999  45555666666643210  00 1146688999


Q ss_pred             EEecCCCCCCeEEEEEEEEc-----eeeEEEEEEEeeccccC--CCCceEEEEEEEeeecCCccccCC--CCCCCceEEE
Q 005225          400 YSHRNVFGRNQKLNISLERG-----QIDSIFRINYTDPWIEG--DDKRTSRTIMVQNSRTPGTHVHGN--QPDNSSLTIG  470 (707)
Q Consensus       400 ~~~~NlfG~G~~l~l~~~~g-----~~~~~~~l~y~~P~~~~--~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  470 (707)
                      ++++||+|+|+++.++++.+     +....+.++|++||+.+  ++.+.++++++++++..+.++.+.  .......+..
T Consensus       460 ~~~~NL~G~g~~L~~~v~~s~~~~g~~d~~f~lsytdPWi~g~~d~~rts~~~~~f~~r~~s~vf~~~~~~~~~~~~~~~  539 (796)
T PLN03138        460 FEHRNIQGLNRSILGSVTSSNLLNPQDDLSFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPPIWVD  539 (796)
T ss_pred             EeccccccccceEEEEEEeecccCCccceEEEEEeecccccCCCCcccccEEEEEEecCcCCceeeCCCCcccCCcceEe
Confidence            99999999999999999984     56778999999999988  455689999999887655444332  1223345688


Q ss_pred             EEEEEEEEEeeCCCCeEEEEEEEEEEEEeecCCCCccc-------------------------ccccCCceeEeeeccCc
Q 005225          471 RVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPII-------------------------KDFYSSPLTASGKTNDE  525 (707)
Q Consensus       471 ~~~~~~~l~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~-------------------------~~~~~~~l~~~~d~~D~  525 (707)
                      +.++++.+++++++.+.+++++.++.+...+..+....                         .+.+...+.+++|++|+
T Consensus       540 R~G~~~~~~rp~~~~~~~s~g~~~q~v~~~d~~g~~~~~~~~~~~~~~~~~~g~plT~S~~g~D~l~~~~~~~trd~~~~  619 (796)
T PLN03138        540 RAGFKANITENFTRQSKFTYGLVVEEITTRDETSHICTHGQRVLPSGGLSADGPPTTLSGTGIDRMAFLQANITRDNTKF  619 (796)
T ss_pred             ecccceEeecccCCCCceEEEEEEEEEEeecCCCCccccccccccccccccCCCceeeccCCcchhhheeeeeEeccCCC
Confidence            99999999999998888899999999988765543221                         11233456778888998


Q ss_pred             ceeeeeeeeecCCCCCCCceEEEEEEeccccCCCcceEEEEEEEEEEEEEec----------CceEEEEEEeeeeecCCC
Q 005225          526 MLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIG----------PARLLLSLSGGHVVGNFS  595 (707)
Q Consensus       526 ~~~P~~g~~~~~~G~~g~~~~~~~~~~~~~~~~~~~~f~k~~~~~~~y~~l~----------~~~l~~~~~~G~~~g~lp  595 (707)
                      +..|+       .|.    .+.++.|++++....+..|+|+.+++++|+|+.          +..|++++++|++.|++|
T Consensus       620 ~~~pt-------~G~----~~~~~~EQ~lpvg~~~~~fNR~~~~~s~fipv~~~~~~~~~~~Pq~la~~~~aG~~~GdLP  688 (796)
T PLN03138        620 VNGAV-------VGD----RHIFQVDQGLGIGSKFPFFNRHQLTVTKFIQLNKVEKGAGKPPPPVLVLHGHYGGCVGDLP  688 (796)
T ss_pred             CCCCC-------ccc----eEEEEeeeeccccCCCCceEEEEEEEEEEEeeccccccccCCCCcEEEEEEeccceecCCC
Confidence            88887       443    268999999998777888999999999999982          347999999999999999


Q ss_pred             cccceeeCCCCCccCCCCCccccceeEEEEeEEEEEecCCceeEEEEEEecccCCCCCCCCCCCCCCCCCCCCceeeEEE
Q 005225          596 PHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFG  675 (707)
Q Consensus       596 ~~e~F~lGG~~svRGy~~~~lg~G~~~~~~s~Elr~pl~~~l~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~~~~s~G~G  675 (707)
                      ++|.|.|||.+|||||.+++++.|++++.+++|||+|| .++.+++|+|+|+.|....+++++|..++-++...+|+|+|
T Consensus       689 pYEAF~LGG~nSVRGY~eG~lg~gRs~l~asaEyRfPi-~~~~g~~F~D~GsdLgS~~~V~G~P~~~r~kpG~G~syG~G  767 (796)
T PLN03138        689 SYDAFTLGGPYSVRGYNMGELGAARNILEVAAELRIPV-RNTHVYAFAEHGTDLGSSKDVKGNPTEFFRRAGHGSSYGVG  767 (796)
T ss_pred             cHHhcccCCCCcccCcccCcccccceeEEEEEEEEeee-ccceEEEEEEeccccCCCCCCCCCchhhccCCCCCccccee
Confidence            99999999999999999999998999999999999999 45789999999999999999999998777777889999999


Q ss_pred             EEEEcCcccEEEEEEEeCC-CCcEEEEEeeec
Q 005225          676 IRVDSPLGPLRLEYAFNDK-QAKRFHFGVGYR  706 (707)
Q Consensus       676 lR~~tp~Gpirld~a~~~~-~~~~f~FsiG~~  706 (707)
                      +|    +||||+|||++++ +..+|||+||.|
T Consensus       768 vr----lGpiR~dYa~~~~~G~~r~hfg~Ger  795 (796)
T PLN03138        768 VK----LGLVRAEYAVDHNAGTGAIFFRFGER  795 (796)
T ss_pred             eE----ecceeEEEeecCCCCCceEEEecccc
Confidence            99    8999999999854 789999999987

>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family Back     alignment and domain information
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK11067 outer membrane protein assembly factor YaeT; Provisional Back     alignment and domain information
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein Back     alignment and domain information
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion] Back     alignment and domain information
>PF01103 Bac_surface_Ag: Surface antigen; InterPro: IPR000184 The protein sequences of d15 from various strains of Haemophilus influenzae are highly conserved, with only a small variable region identified near the carboxyl terminus of the protein [] Back     alignment and domain information
>KOG2602 consensus Predicted cell surface protein homologous to bacterial outer membrane proteins [General function prediction only] Back     alignment and domain information
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein Back     alignment and domain information
>PRK11067 outer membrane protein assembly factor YaeT; Provisional Back     alignment and domain information
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03865 ShlB: Haemolysin secretion/activation protein ShlB/FhaC/HecB; InterPro: IPR005565 Haemolysin (HlyA) and related toxins are secreted across both the cytoplasmic and outer membranes of Gram-negative bacteria in a process which proceeds without a periplasmic intermediate Back     alignment and domain information
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus Back     alignment and domain information
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus Back     alignment and domain information
>PLN03138 Protein TOC75; Provisional Back     alignment and domain information
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO) Back     alignment and domain information
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family Back     alignment and domain information
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion] Back     alignment and domain information
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO) Back     alignment and domain information
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query707
3mc8_A316 Potra1-3 Of The Periplasmic Domain Of Omp85 From An 2e-29
2x8x_X235 Structure Of The N-Terminal Domain Of Omp85 From Th 2e-26
>pdb|3MC8|A Chain A, Potra1-3 Of The Periplasmic Domain Of Omp85 From Anabaena Length = 316 Back     alignment and structure 
Iteration: 1

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 145/260 (55%), Gaps = 17/260 (6%)
Query: 126 PHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHR 185
           P++   + E RVL+SEVLVR + G+     +LET+    ++  +     T  ++QED++ 
Sbjct: 51  PNATPETTEPRVLVSEVLVRPQSGQLT--PELETQVYNVIR-TQPGRTTTRSQLQEDINA 107
Query: 186 IIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCE---GANV---LPTKFVEDAFR 239
           I  +G+F +      DT  G+R+ F V+PN     +  +   G NV   LP    ++ FR
Sbjct: 108 IFGTGFFSNVQASPEDTPLGVRVSFIVQPNPVLSKVEIQANPGTNVPSVLPQATADEIFR 167
Query: 240 DGYGKVVNIRRLDEVITSINGWYMERG--LFGMVSGVEILSGGIIRLQVAEAEVNNISIR 297
             YGK++N+R L E I  +   Y ++G  L  +V   ++   G++ LQVAE  V NIS+R
Sbjct: 168 AQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVGAPQVSENGVVTLQVAEGVVENISVR 227
Query: 298 FLDRK------TGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSI 351
           F +++       G+P +G+T+   I R++  K GQV++    ++D++ V   G+ EDV++
Sbjct: 228 FRNKEGQDVNEQGQPIRGRTQDYIITREVELKPGQVFNRNTVQKDLQRVFGTGLFEDVNV 287
Query: 352 IPQPAGDTGKVDLIMNVVER 371
              P  D  KV++++NVVER
Sbjct: 288 SLDPGTDPTKVNVVVNVVER 307
>pdb|2X8X|X Chain X, Structure Of The N-Terminal Domain Of Omp85 From The Thermophilic Cyanobacterium Thermosynechococcus Elongatus Length = 235 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query707
3mc9_A316 ALR2269 protein; polypeptide transport associated, 4e-46
2x8x_X235 TLR1789 protein, OMP85; chaperone, TOC75, protein 1e-44
2qdz_A554 TPSB transporter FHAC; beta barrel, potra domain, 4e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
3q6b_A189 Outer membrane protein assembly complex, YAET Pro; 6e-06
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A Length = 316 Back     alignment and structure
 Score =  165 bits (419), Expect = 4e-46
 Identities = 87/285 (30%), Positives = 151/285 (52%), Gaps = 17/285 (5%)

Query: 104 QSSAEFPAQSELSTQLQQKAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALT 163
            +    PA +  +T   +    P++   + E RVL+SEVLVR + G+     +LET+   
Sbjct: 29  TTEQPAPAPAPGTTPGTENFNTPNATPETTEPRVLVSEVLVRPQSGQL--TPELETQVYN 86

Query: 164 ALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVC 223
            ++  +     T  ++QED++ I  +G+F +      DT  G+R+ F V+PN     +  
Sbjct: 87  VIR-TQPGRTTTRSQLQEDINAIFGTGFFSNVQASPEDTPLGVRVSFIVQPNPVLSKVEI 145

Query: 224 EG------ANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERG--LFGMVSGVE 275
           +        +VLP    ++ FR  YGK++N+R L E I  +   Y ++G  L  +V   +
Sbjct: 146 QANPGTNVPSVLPQATADEIFRAQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVGAPQ 205

Query: 276 ILSGGIIRLQVAEAEVNNISIRFLDRK------TGEPTKGKTRPETILRQLTTKKGQVYS 329
           +   G++ LQVAE  V NIS+RF +++       G+P +G+T+   I R++  K GQV++
Sbjct: 206 VSENGVVTLQVAEGVVENISVRFRNKEGQDVNEQGQPIRGRTQDYIITREVELKPGQVFN 265

Query: 330 MLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSG 374
               ++D++ V   G+ EDV++   P  D  KV++++NVVER   
Sbjct: 266 RNTVQKDLQRVFGTGLFEDVNVSLDPGTDPTKVNVVVNVVERSLE 310
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus} Length = 235 Back     alignment and structure
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A Length = 554 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A Length = 189 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query707
2qdz_A554 TPSB transporter FHAC; beta barrel, potra domain, 100.0
3mc9_A316 ALR2269 protein; polypeptide transport associated, 99.96
2x8x_X235 TLR1789 protein, OMP85; chaperone, TOC75, protein 99.95
2qdf_A335 OMP85, outer membrane protein assembly factor YAET 99.94
3efc_A395 OMP85, outer membrane protein assembly factor YAET 99.94
3efc_A395 OMP85, outer membrane protein assembly factor YAET 99.91
2qdf_A335 OMP85, outer membrane protein assembly factor YAET 99.87
3q6b_A189 Outer membrane protein assembly complex, YAET Pro; 99.8
3q6b_A189 Outer membrane protein assembly complex, YAET Pro; 99.51
2x8x_X235 TLR1789 protein, OMP85; chaperone, TOC75, protein 99.29
2qdz_A554 TPSB transporter FHAC; beta barrel, potra domain, 99.23
3mc9_A316 ALR2269 protein; polypeptide transport associated, 99.14
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A Back     alignment and structure
Probab=100.00  E-value=3.2e-47  Score=435.91  Aligned_cols=458  Identities=14%  Similarity=0.101  Sum_probs=345.2

Q ss_pred             EEee---CCceE--EEEEecCcCCChhHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHhCCc-eeEeeeE-EEeeCcEEE
Q 005225          211 QVEP---NQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGV-EILSGGIIR  283 (707)
Q Consensus       211 ~V~E---G~~~~--~I~~~G~~~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~~~-~~~~~~~v~  283 (707)
                      ...|   |++++  +|+|+|++.+++++|++.+..++|++|+.+.|++++++|+++|+++|| +++|... +...++.|+
T Consensus        49 ~~~e~~~g~~~~i~~I~~~G~~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~g~l~  128 (554)
T 2qdz_A           49 RKPDATSGHTVTVHAVDLDFGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGVVDGVLK  128 (554)
T ss_dssp             ----CBCCCSSSSCCEEEECCSSSCCCSCSTTSTTSSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEEEEEEEETTEEE
T ss_pred             CCccccCCceEEEEEEEEECCccCCHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEcccccccCCEEE
Confidence            3468   88865  999999999999999999999999999999999999999999999999 5887654 344678899


Q ss_pred             EEEeeeEEEEEEEEeccccCCCCCCCCCCHHHHHh---hcccCCCCccchhhHHHHHHHHHhCCCCccceeeeccCCCCC
Q 005225          284 LQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILR---QLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTG  360 (707)
Q Consensus       284 i~I~eg~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r---~l~l~~G~~~~~~~l~~~~~~L~~~G~F~~V~i~~~~~~~~~  360 (707)
                      |.|.||+|++|.|+      |+.   ++++.+|++   ++++++|++|+.++|++++++|.+++  ..|.+.+.|...++
T Consensus       129 i~v~eG~i~~I~i~------G~~---~~~~~~l~~~~~~~~~~~G~~~n~~~le~~~~~L~~~~--~~v~~~~~p~~~~g  197 (554)
T 2qdz_A          129 LKVEWGRIKGWLID------GKP---LEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGG--KTGNITIVPADEYG  197 (554)
T ss_dssp             EEEECCEEEEEEET------TEE---CCSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCSSS--EEEEEEEEECSSTT
T ss_pred             EEEEeEEEEEEEEC------CCC---ccchhhhhhhhhhccccCCCcCCHHHHHHHHHHHhcCc--hhceEEEecCCCCC
Confidence            99999999999998      984   889999999   99999999999999999999999998  66888888876789


Q ss_pred             eEEEEEEEEEcCCceEEEeeeeec--CccCCCccceEEEEEEEecCCCCCCeEEEEEEEEce-------eeEEEEEEEee
Q 005225          361 KVDLIMNVVERPSGGFSAGGGISS--GITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQ-------IDSIFRINYTD  431 (707)
Q Consensus       361 ~vdl~i~V~E~~~~~~~~g~gyss--~~~~g~~~g~~~~~~~~~~NlfG~G~~l~l~~~~g~-------~~~~~~l~y~~  431 (707)
                      .++|+|+|+|++++.+.++++...  ...   ..++++.+.+.++|++|.|+++++++..+.       ..+.+.++|+.
T Consensus       198 ~~~l~v~v~e~~~~~~~~g~~~~g~g~~~---tg~~~~~~~~~~~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~  274 (554)
T 2qdz_A          198 YSYLDLQLQRRALPRVSLGMDNSGPGTPE---NGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSV  274 (554)
T ss_dssp             EEEEEEEEEECCSCEEEEEEEECSCSSSC---SSCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEE
T ss_pred             eeEEEEEEeeCCcEEEEEEEcCCCCCCCC---ccceEEEEEEEeCCCCCCCcEEEEEEEecCccccCCCCceEEEEEEEE
Confidence            999999999998877666665432  111   134889999999999999999999999985       67889999999


Q ss_pred             ccccCCCCceEEEEEEEeeecCCccccCCCCCCCceEEEEEEEEEEEEeeC--CCCeEEEEEEEEEEEEeecC-CCC-c-
Q 005225          432 PWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPI--RPKWSGTVGLIFQHSGARDE-KGN-P-  506 (707)
Q Consensus       432 P~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~lg~~~~~~~~~~~-~~~-~-  506 (707)
                      |+..     +.+.+.+.+.++...+ .+ ......|...+.++++.+++++  ...+++++++.+.+.+..+. .+. . 
T Consensus       275 P~~~-----~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (554)
T 2qdz_A          275 PLGR-----TRLDLQTGYSTYRNLL-KT-RYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRLD  347 (554)
T ss_dssp             EETT-----EEEEEEEEEEEEECCC-SS-SSCCCCCEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTTSCC
T ss_pred             EEec-----CeEEEEEEEeEEEEEc-cC-CcceEEEEeeEEEEEEEEEEEEEECCCeEEEEEEEEEEEEeeeeeCCcCcc
Confidence            9863     3455544444322111 11 1122346677788889999988  45676777777666655431 111 1 


Q ss_pred             -ccccccCCceeEeeeccCc--ceeeeeeeeecCCCC-CCCceEEEEEEeccccCCCcceEEEEEEEEEEEEEe--cCc-
Q 005225          507 -IIKDFYSSPLTASGKTNDE--MLIAKFESVYTGSGD-QGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEI--GPA-  579 (707)
Q Consensus       507 -~~~~~~~~~l~~~~d~~D~--~~~P~~g~~~~~~G~-~g~~~~~~~~~~~~~~~~~~~~f~k~~~~~~~y~~l--~~~-  579 (707)
                       .........++++|++++.  .+.+..+...   |. .+.   ....+.  ...+++..|.|+.+++++|+|+  ... 
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---G~~~~a---~~~~~~--~~~~~~~~f~k~~~~~~~~~~~~~~~~~  419 (554)
T 2qdz_A          348 VSSKHYSDVTVGMQYSTQRGANAYFGDLSFTR---GVGVNN---GKYAAY--DERGPQGNVSRFNGSLAWTRYMALAGQP  419 (554)
T ss_dssp             CEEEEEEEEEEEEEEEEECSSEEEEEEEEEEE---CCCC-------------------CCCEEEEEEEEEEEEEEETTEE
T ss_pred             ccCceEEEEEEEEEEEEEecCeEEEEEEEEEe---cCCCCC---CcCccc--ccCCCcceEEEEEEEEEEEEEccccCCC
Confidence             1112334567778887764  4455433221   11 000   000000  0112467899999999999997  233 


Q ss_pred             -eEEEEEEeeeeecCCCcccceeeCCCCCccCCCCCccccceeEEEEeEEEEEec-----C--CceeEEEEEEecccCCC
Q 005225          580 -RLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPM-----L--GPVEGVIFSDYGTDLGS  651 (707)
Q Consensus       580 -~l~~~~~~G~~~g~lp~~e~F~lGG~~svRGy~~~~lg~G~~~~~~s~Elr~pl-----~--~~l~~~~F~D~G~v~~~  651 (707)
                       .+.+++.+++..+++|++|+|++||.++||||+++.++||+.++.+++|||||+     .  ..+.+++|+|+|++|+.
T Consensus       420 ~~~~~~~~~q~~~~~lp~~e~f~lGG~~sVRGy~~~~l~pGd~g~~~~~El~~~~~~~~~~~~~~~~~~~F~D~G~v~~~  499 (554)
T 2qdz_A          420 IQWASQLGFQYSRQQLLNSYQITVGDEYTVRGYNLRTSQSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGADVGALKSN  499 (554)
T ss_dssp             EEEEEEEEEEECSSCSSSSEECCSCCCCCCTTCCCCCSCCSSCSSCCEESEEEEEEEEEEECCSSCEEEEEEEEEEEECS
T ss_pred             EEEEEEEEeEecCCCCCcHHhEecCCCCeECCcccccccCCCccEEEEEEEEeeccccccCccceEEEEEEEEEEEEecC
Confidence             566777778777789999999999999999999999987999999999999996     2  36899999999999986


Q ss_pred             CCCCCCCCCCCCCCCCCceeeEEEEEEEcCcccEEEEEEEeCC-------CCcEE-EEEeeec
Q 005225          652 GPSVPGDPAGARLKPGSGYGYGFGIRVDSPLGPLRLEYAFNDK-------QAKRF-HFGVGYR  706 (707)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~s~G~GlR~~tp~Gpirld~a~~~~-------~~~~f-~FsiG~~  706 (707)
                      ....         ..+++.|+|+|+||.+|+||++||||++++       +..+| ||+||++
T Consensus       500 ~~~~---------~~~~~~g~G~Glr~~~~~~~l~l~~a~pl~~~~~~~~~~~~~~~fsig~~  553 (554)
T 2qdz_A          500 HPDA---------RTIRMAGLAAGVRFDLPYARMSFTYSKPVGAQPGGAPRAPVWLYINAGLS  553 (554)
T ss_dssp             SSSC---------CEEEEEEEEEEEEECCSSEEEEEEEEEECSCSCSSSCCCCSEEEEEEEEE
T ss_pred             CCCC---------CCCEEEEEEEEEEEecCcEEEEEEEEeeccCCcccccCCceEEEEEEEEE
Confidence            4311         114679999999999999999999999852       35789 9999975
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A Back     alignment and structure
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus} Back     alignment and structure
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A Back     alignment and structure
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli} Back     alignment and structure
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli} Back     alignment and structure
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A Back     alignment and structure
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A Back     alignment and structure
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A Back     alignment and structure
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus} Back     alignment and structure
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A Back     alignment and structure
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00