Citrus Sinensis ID: 005265
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 705 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SIT7 | 697 | Pentatricopeptide repeat- | yes | no | 0.946 | 0.956 | 0.698 | 0.0 | |
| Q9FRI5 | 790 | Pentatricopeptide repeat- | no | no | 0.907 | 0.810 | 0.388 | 1e-137 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.920 | 0.825 | 0.376 | 1e-135 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.885 | 0.798 | 0.388 | 1e-127 | |
| Q9FWA6 | 903 | Pentatricopeptide repeat- | no | no | 0.856 | 0.668 | 0.370 | 1e-123 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.882 | 0.842 | 0.359 | 1e-122 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.835 | 0.553 | 0.357 | 1e-121 | |
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | no | no | 0.875 | 0.732 | 0.369 | 1e-120 | |
| Q9LFI1 | 768 | Pentatricopeptide repeat- | no | no | 0.824 | 0.756 | 0.374 | 1e-120 | |
| P93005 | 727 | Pentatricopeptide repeat- | no | no | 0.880 | 0.854 | 0.357 | 1e-119 |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/670 (69%), Positives = 558/670 (83%), Gaps = 3/670 (0%)
Query: 1 MATQRSVKQIVGDLA-FLDSSPFAKLLDSCLRSK-SVSDTRRVHARIIKSQFASEIFIQN 58
MAT +S ++ DL+ F DSSPFAKLLDSC++SK S R VHA +IKS F++EIFIQN
Sbjct: 1 MAT-KSFLKLAADLSSFTDSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQN 59
Query: 59 RLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCS 118
RLID Y+KCG L R+VFDKM +N++TWNS++TGL K GF+D+A LF SMPERDQC+
Sbjct: 60 RLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCT 119
Query: 119 WNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLS 178
WNSMVSGFAQHDR EAL YF MH E F L+EYSF S LSAC+G D G QVH+L++
Sbjct: 120 WNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIA 179
Query: 179 KSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALE 238
KS + SDVY+GSAL+DMY KCG V+ A+RVFD M +RN+VSWNSLITC+EQNGPA +AL+
Sbjct: 180 KSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALD 239
Query: 239 VFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMY 298
VF M+ S +EPDEVTLASV+SACASL+A K G ++H R+++ +KLRND++L NA VDMY
Sbjct: 240 VFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMY 299
Query: 299 AKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIA 358
AKC ++ EAR +FD MPIRNV++ETSM+SGYA A+S K+ARLMFTKM ERNVVSWNALIA
Sbjct: 300 AKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIA 359
Query: 359 GYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRF 418
GYTQNGENEEAL LF LLKRESVCPTHY+F N+L ACA+LA+L LG QAH HV+KHG +F
Sbjct: 360 GYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKF 419
Query: 419 LSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALG 478
SGEE DIFVGNSLIDMY+KCG VE+G +F M+ERD VSWNAMI+G AQNGYG EAL
Sbjct: 420 QSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALE 479
Query: 479 LFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLL 538
LF++ML GEKPDH+TMIGVL AC HAG VEEGR YFSSM+++ G+APL+DHYTCMVDLL
Sbjct: 480 LFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLL 539
Query: 539 GRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYV 598
GRAG L+EAK++IE MPMQPD+VIWGSLLAACKVHRNI LG+YVA+KLLE+EPSNSGPYV
Sbjct: 540 GRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYV 599
Query: 599 LLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYL 658
LLSNMYAELG+W +V+ VRK MRK GV KQPGCSWI+I GH +VFMVKDK HP K+I+
Sbjct: 600 LLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHS 659
Query: 659 VLKMLTREMK 668
+L +L EM+
Sbjct: 660 LLDILIAEMR 669
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 489 bits (1260), Expect = e-137, Method: Compositional matrix adjust.
Identities = 267/687 (38%), Positives = 395/687 (57%), Gaps = 47/687 (6%)
Query: 30 LRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWN 89
LR S+ R VH II F I NRLIDVY K L AR++FD++S +
Sbjct: 25 LRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIART 84
Query: 90 SIITGLLKWGFIDDASRLFASMP--ERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENF 147
++++G G I A +F P RD +N+M++GF+ ++ A+ F KM E F
Sbjct: 85 TMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGF 144
Query: 148 ALSEYSFGSALSACA-GSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGR----V 202
++F S L+ A + D K Q HA KS + +AL+ +Y KC +
Sbjct: 145 KPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLL 204
Query: 203 SCARRVFDGMRERNIVSWNSLITCYEQNGP------------------------------ 232
AR+VFD + E++ SW +++T Y +NG
Sbjct: 205 HSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNR 264
Query: 233 --ASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVL 290
+ALE+ RM++SGIE DE T SV+ ACA+ + G Q+HA ++R E
Sbjct: 265 GFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDF--SFHF 322
Query: 291 GNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNV 350
N+LV +Y KCGK +EAR +F++MP +++VS +++SGY + + A+L+F +M E+N+
Sbjct: 323 DNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI 382
Query: 351 VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTH 410
+SW +I+G +NG EE L LF +KRE P Y F + +CA L G+Q H
Sbjct: 383 LSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQ 442
Query: 411 VVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQN 470
++K G +S + GN+LI MY KCG VE+ ++F TM D VSWNA+I Q+
Sbjct: 443 LLKIGF------DSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQH 496
Query: 471 GYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDH 530
G+G EA+ ++++ML G +PD +T++ VL ACSHAGLV++GRKYF SM + + P DH
Sbjct: 497 GHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADH 556
Query: 531 YTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIE 590
Y ++DLL R+G +A+++IE++P +P A IW +LL+ C+VH N+ LG A KL +
Sbjct: 557 YARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLI 616
Query: 591 PSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRH 650
P + G Y+LLSNM+A G+W EV RVRKLMR RGV K+ CSWIE+ V+ F+V D H
Sbjct: 617 PEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSH 676
Query: 651 PLNKEIYLVLKMLTREMKRVGYVPNAS 677
P + +Y+ L+ L +EM+R+GYVP+ S
Sbjct: 677 PEAEAVYIYLQDLGKEMRRLGYVPDTS 703
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 483 bits (1242), Expect = e-135, Method: Compositional matrix adjust.
Identities = 263/699 (37%), Positives = 406/699 (58%), Gaps = 50/699 (7%)
Query: 22 FAKLLDSC--LRSKSVSDT------RRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGA 73
+ LL+ C L KSV+ + + VH R+IKS +++ N L++VY+K G A
Sbjct: 9 LSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHA 68
Query: 74 RKVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFS 133
RK+FD+M + F+WN++++ K G +D F +P+RD SW +M+ G+ ++
Sbjct: 69 RKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYH 128
Query: 134 EALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALI 193
+A+ M E ++++ + L++ A + + G +VH+ + K +V + ++L+
Sbjct: 129 KAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLL 188
Query: 194 DMYGKCGRVSCARRVFD-------------------------------GMRERNIVSWNS 222
+MY KCG A+ VFD M ER+IV+WNS
Sbjct: 189 NMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNS 248
Query: 223 LITCYEQNGPASDALEVFVRMMA-SGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRC 281
+I+ + Q G AL++F +M+ S + PD TLASV+SACA+L G QIH+ ++
Sbjct: 249 MISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTT 308
Query: 282 EKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSE--TSMVSGYAKASSVKSAR 339
+ +VL NAL+ MY++CG + AR + ++ +++ E T+++ GY K + A+
Sbjct: 309 GFDISGIVL-NALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAK 367
Query: 340 LMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLA 399
+F + +R+VV+W A+I GY Q+G EA+ LFR + P YT +L+ ++LA
Sbjct: 368 NIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLA 427
Query: 400 DLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETM-VERDWV 458
L G+Q H VK SGE + V N+LI MY K G++ R F+ + ERD V
Sbjct: 428 SLSHGKQIHGSAVK------SGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTV 481
Query: 459 SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSM 518
SW +MI+ AQ+G+ EAL LF+ ML+ G +PDH+T +GV AC+HAGLV +GR+YF M
Sbjct: 482 SWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMM 541
Query: 519 SKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIML 578
+ P HY CMVDL GRAG L EA+ IE MP++PD V WGSLL+AC+VH+NI L
Sbjct: 542 KDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDL 601
Query: 579 GEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILG 638
G+ A++LL +EP NSG Y L+N+Y+ G+W E ++RK M+ V K+ G SWIE+
Sbjct: 602 GKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKH 661
Query: 639 HVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVPNAS 677
V+VF V+D HP EIY+ +K + E+K++GYVP+ +
Sbjct: 662 KVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTA 700
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1176), Expect = e-127, Method: Compositional matrix adjust.
Identities = 254/653 (38%), Positives = 385/653 (58%), Gaps = 29/653 (4%)
Query: 26 LDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNV 85
+ S +R+ ++ RV R+ + S N +I Y + G ARK+FD+M +++
Sbjct: 71 ISSYMRTGRCNEALRVFKRMPRWSSVS----YNGMISGYLRNGEFELARKLFDEMPERDL 126
Query: 86 FTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSE 145
+WN +I G ++ + A LF MPERD CSWN+M+SG+AQ+ +A F +M +
Sbjct: 127 VSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK 186
Query: 146 NFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCA 205
N + S+ + LSA + + +L KSR + + + L+ + K ++ A
Sbjct: 187 N----DVSWNALLSAYVQNSKMEEA----CMLFKSRENWALVSWNCLLGGFVKKKKIVEA 238
Query: 206 RRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASL 265
R+ FD M R++VSWN++IT Y Q+G +A ++F DE + V + A +
Sbjct: 239 RQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLF----------DESPVQDVFTWTAMV 288
Query: 266 AAFKEGLQIH-ARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETS 324
+ + + + AR + + + V NA++ Y + ++ A+ +FD MP RNV + +
Sbjct: 289 SGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNT 348
Query: 325 MVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPT 384
M++GYA+ + A+ +F KM +R+ VSW A+IAGY+Q+G + EAL LF ++RE
Sbjct: 349 MITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLN 408
Query: 385 HYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVED 444
+F + L+ CA++ L+LG+Q H +VK G E+ FVGN+L+ MY KCGS+E+
Sbjct: 409 RSSFSSALSTCADVVALELGKQLHGRLVK------GGYETGCFVGNALLLMYCKCGSIEE 462
Query: 445 GCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSH 504
+F+ M +D VSWN MI G +++G+G AL F+ M G KPD TM+ VL ACSH
Sbjct: 463 ANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSH 522
Query: 505 AGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWG 564
GLV++GR+YF +M++++G+ P HY CMVDLLGRAG L++A L++ MP +PDA IWG
Sbjct: 523 TGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWG 582
Query: 565 SLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624
+LL A +VH N L E A K+ +EP NSG YVLLSN+YA GRWG+V ++R MR +G
Sbjct: 583 TLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKG 642
Query: 625 VVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVPNAS 677
V K PG SWIEI + F V D+ HP EI+ L+ L MK+ GYV S
Sbjct: 643 VKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTS 695
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 444 bits (1142), Expect = e-123, Method: Compositional matrix adjust.
Identities = 243/655 (37%), Positives = 368/655 (56%), Gaps = 51/655 (7%)
Query: 15 AFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGAR 74
A + S +A +L SC + ++HA +KS FA++ ++ +D+YAKC + A+
Sbjct: 277 AGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQ 336
Query: 75 KVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSE 134
+FD N N ++N++IT G++Q + +
Sbjct: 337 ILFDNSENLNRQSYNAMIT-------------------------------GYSQEEHGFK 365
Query: 135 ALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALID 194
AL F ++ S E S ACA G Q++ L KS S DV + +A ID
Sbjct: 366 ALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAID 425
Query: 195 MYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVT 254
MYGKC ++ A RVFD MR R+ VSWN++I +EQNG + L +FV M+ S IEPDE T
Sbjct: 426 MYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFT 485
Query: 255 LASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRM 314
S++ AC + G++IH+ +++ N V G +L+DMY+KCG + EA + R
Sbjct: 486 FGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSV-GCSLIDMYSKCGMIEEAEKIHSRF 543
Query: 315 PIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFR 374
R VS T ++ M K L+ VSWN++I+GY ++E+A LF
Sbjct: 544 FQRANVSGT-----------MEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFT 592
Query: 375 LLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLID 434
+ + P +T+ +L+ CANLA LG+Q H V+K L +SD+++ ++L+D
Sbjct: 593 RMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKEL------QSDVYICSTLVD 646
Query: 435 MYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVT 494
MY KCG + D +FE + RD+V+WNAMI G A +G G EA+ LF++M+L KP+HVT
Sbjct: 647 MYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVT 706
Query: 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM 554
I +L AC+H GL+++G +YF M +++GL P HY+ MVD+LG++G + A LI M
Sbjct: 707 FISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREM 766
Query: 555 PMQPDAVIWGSLLAACKVHR-NIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEV 613
P + D VIW +LL C +HR N+ + E LL ++P +S Y LLSN+YA+ G W +V
Sbjct: 767 PFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKV 826
Query: 614 VRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMK 668
+R+ MR + K+PGCSW+E+ ++VF+V DK HP +EIY L ++ EMK
Sbjct: 827 SDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMK 881
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1130), Expect = e-122, Method: Compositional matrix adjust.
Identities = 241/671 (35%), Positives = 387/671 (57%), Gaps = 49/671 (7%)
Query: 25 LLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYA--KCGCLYGARKVFDKMSN 82
L++ C+ S+ ++ H +I++ S+ + ++L + A L ARKVFD++
Sbjct: 36 LIERCV---SLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPK 92
Query: 83 KNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKM 142
N F WN++I R +AS P+ ++S +A D SE+ Y
Sbjct: 93 PNSFAWNTLI-------------RAYASGPD-------PVLSIWAFLDMVSESQCY---- 128
Query: 143 HSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRV 202
++Y+F + A A +G +H + KS SDV++ ++LI Y CG +
Sbjct: 129 ------PNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDL 182
Query: 203 SCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSAC 262
A +VF ++E+++VSWNS+I + Q G ALE+F +M + ++ VT+ V+SAC
Sbjct: 183 DSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSAC 242
Query: 263 ASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSE 322
A + + G Q+ + + ++ +L L NA++DMY KCG + +A+ +FD M ++ V+
Sbjct: 243 AKIRNLEFGRQVCSYIEE-NRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTW 301
Query: 323 TSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLK-RESV 381
T+M+ GYA + ++AR + M ++++V+WNALI+ Y QNG+ EAL +F L+ ++++
Sbjct: 302 TTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNM 361
Query: 382 CPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGS 441
T + L+ACA + L+LGR H+++ KHG+R + V ++LI MY KCG
Sbjct: 362 KLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRM------NFHVTSALIHMYSKCGD 415
Query: 442 VEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCA 501
+E +F ++ +RD W+AMI G A +G G EA+ +F KM KP+ VT V CA
Sbjct: 416 LEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCA 475
Query: 502 CSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAV 561
CSH GLV+E F M +G+ P + HY C+VD+LGR+G L++A IEAMP+ P
Sbjct: 476 CSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTS 535
Query: 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621
+WG+LL ACK+H N+ L E +LLE+EP N G +VLLSN+YA+LG+W V +RK MR
Sbjct: 536 VWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMR 595
Query: 622 KRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVPNAS---- 677
G+ K+PGCS IEI G ++ F+ D HP+++++Y L + ++K GY P S
Sbjct: 596 VTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQ 655
Query: 678 --DDEAYEEQN 686
++E +EQ+
Sbjct: 656 IIEEEEMKEQS 666
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust.
Identities = 235/658 (35%), Positives = 365/658 (55%), Gaps = 69/658 (10%)
Query: 18 DSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVF 77
DS+ A L+ +C ++ +++HA K FAS I+ L+++YAKC + A F
Sbjct: 388 DSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYF 447
Query: 78 DKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALG 137
+ +NV WN + L+ +G +DD F
Sbjct: 448 LETEVENVVLWNVM---LVAYGLLDDLRNSFR---------------------------- 476
Query: 138 YFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYG 197
F +M E ++Y++ S L C D ++G Q+H+ + K+ + + Y+ S LIDMY
Sbjct: 477 IFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYA 536
Query: 198 KCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLAS 257
K G++ A + +++VSW ++I Y Q AL F +M+ GI DEV L +
Sbjct: 537 KLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTN 596
Query: 258 VVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIR 317
VSACA L A KEG QIHA+ +DL NALV +Y++CGK+ E+
Sbjct: 597 AVSACAGLQALKEGQQIHAQAC-VSGFSSDLPFQNALVTLYSRCGKIEESY--------- 646
Query: 318 NVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLK 377
L F + + ++WNAL++G+ Q+G NEEAL +F +
Sbjct: 647 ----------------------LAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMN 684
Query: 378 RESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYM 437
RE + ++TFG+ + A + A+++ G+Q H + K +G +S+ V N+LI MY
Sbjct: 685 REGIDNNNFTFGSAVKAASETANMKQGKQVHAVITK------TGYDSETEVCNALISMYA 738
Query: 438 KCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIG 497
KCGS+ D + F + ++ VSWNA+I +++G+G+EAL F +M+ +P+HVT++G
Sbjct: 739 KCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVG 798
Query: 498 VLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQ 557
VL ACSH GLV++G YF SM+ E+GL+P +HY C+VD+L RAG L AK I+ MP++
Sbjct: 799 VLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIK 858
Query: 558 PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVR 617
PDA++W +LL+AC VH+N+ +GE+ A LLE+EP +S YVLLSN+YA +W R
Sbjct: 859 PDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTR 918
Query: 618 KLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVPN 675
+ M+++GV K+PG SWIE+ ++ F V D+ HPL EI+ + LT+ +GYV +
Sbjct: 919 QKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQD 976
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust.
Identities = 244/661 (36%), Positives = 370/661 (55%), Gaps = 44/661 (6%)
Query: 21 PFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKM 80
PF L +C +S++ + ++H I+K +A ++F+QN L+ YA+CG L ARKVFD+M
Sbjct: 138 PFG--LSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEM 195
Query: 81 SNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFV 140
S +NV +W S+I G + F DA LF M ++ + NS+
Sbjct: 196 SERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSV------------------ 237
Query: 141 KMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCG 200
+ +SACA D + G +V+A + S + M SAL+DMY KC
Sbjct: 238 ------------TMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCN 285
Query: 201 RVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVS 260
+ A+R+FD N+ N++ + Y + G +AL VF MM SG+ PD +++ S +S
Sbjct: 286 AIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAIS 345
Query: 261 ACASLAAFKEGLQIHARLMR--CEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRN 318
+C+ L G H ++R E N + NAL+DMY KC + + A +FDRM +
Sbjct: 346 SCSQLRNILWGKSCHGYVLRNGFESWDN---ICNALIDMYMKCHRQDTAFRIFDRMSNKT 402
Query: 319 VVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLF-RLLK 377
VV+ S+V+GY + V +A F M E+N+VSWN +I+G Q EEA+ +F +
Sbjct: 403 VVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQS 462
Query: 378 RESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYM 437
+E V T ++ +AC +L L L + + ++ K+G++ D+ +G +L+DM+
Sbjct: 463 QEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQL------DVRLGTTLVDMFS 516
Query: 438 KCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIG 497
+CG E IF ++ RD +W A I A G A+ LF M+ G KPD V +G
Sbjct: 517 RCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVG 576
Query: 498 VLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQ 557
L ACSH GLV++G++ F SM K HG++P HY CMVDLLGRAG L+EA LIE MPM+
Sbjct: 577 ALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPME 636
Query: 558 PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVR 617
P+ VIW SLLAAC+V N+ + Y A+K+ + P +G YVLLSN+YA GRW ++ +VR
Sbjct: 637 PNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVR 696
Query: 618 KLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVPNAS 677
M+++G+ K PG S I+I G + F D+ HP I +L +++ +G+VP+ S
Sbjct: 697 LSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLS 756
Query: 678 D 678
+
Sbjct: 757 N 757
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 244/652 (37%), Positives = 361/652 (55%), Gaps = 71/652 (10%)
Query: 18 DSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVF 77
D F ++ +C S V +++HA++IK + +S + QN LI +Y + F
Sbjct: 167 DQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVR----------F 216
Query: 78 DKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALG 137
++MS DASR+F +P +D SW+S+++GF+Q EAL
Sbjct: 217 NQMS---------------------DASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALS 255
Query: 138 YFVKMHSEN-FALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMY 196
+ +M S F +EY FGS+L AC+ + G+Q+H L KS + + G +L DMY
Sbjct: 256 HLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMY 315
Query: 197 GKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLA 256
+CG ++ ARRVFD + + SWN +I NG A +A+ VF +M +SG PD ++L
Sbjct: 316 ARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLR 375
Query: 257 SVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMP- 315
S++ A A +G+QIH+ +++ L DL + N+L+ MY C L C F+
Sbjct: 376 SLLCAQTKPMALSQGMQIHSYIIKWGFLA-DLTVCNSLLTMYTFCSDL---YCCFNLFED 431
Query: 316 IRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRL 375
RN + VSWN ++ Q+ + E L LF+L
Sbjct: 432 FRN----------------------------NADSVSWNTILTACLQHEQPVEMLRLFKL 463
Query: 376 LKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDM 435
+ P H T GNLL C ++ L+LG Q H + +K GL + F+ N LIDM
Sbjct: 464 MLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGL------APEQFIKNGLIDM 517
Query: 436 YMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTM 495
Y KCGS+ RIF++M RD VSW+ +IVG AQ+G+G EAL LFK+M G +P+HVT
Sbjct: 518 YAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTF 577
Query: 496 IGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMP 555
+GVL ACSH GLVEEG K +++M EHG++P K+H +C+VDLL RAG L+EA+ I+ M
Sbjct: 578 VGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMK 637
Query: 556 MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVR 615
++PD V+W +LL+ACK N+ L + A+ +L+I+P NS +VLL +M+A G W
Sbjct: 638 LEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAAL 697
Query: 616 VRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREM 667
+R M+K V K PG SWIEI +++F +D HP +IY VL + +M
Sbjct: 698 LRSSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFHPERDDIYTVLHNIWSQM 749
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust.
Identities = 250/700 (35%), Positives = 382/700 (54%), Gaps = 79/700 (11%)
Query: 1 MATQRSVKQIVGDLAFLDSSPFAKLL------DSCLRSKSVSDTRRVHARIIKSQFASEI 54
+++ +V Q+ ++ D P A L +S L+S +V R+ HA ++K +I
Sbjct: 96 ISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVG--RQAHALVVKMSSFGDI 153
Query: 55 FIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPER 114
++ L+ +Y K G ++D ++FA MPER
Sbjct: 154 YVDTSLVGMYCKAG-------------------------------LVEDGLKVFAYMPER 182
Query: 115 DQCSWNSMVSGFAQHDRFSEALGYF--VKMHSENFALSEYSFGSALSACAGSVDFKMGTQ 172
+ +W++MVSG+A R EA+ F E + S+Y F + LS+ A ++ +G Q
Sbjct: 183 NTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQ 242
Query: 173 VHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGP 232
+H + K+ V + +AL+ MY KC ++ A ++FD +RN ++W++++T Y QNG
Sbjct: 243 IHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGE 302
Query: 233 ASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGN 292
+ +A+++F RM ++GI+P E T+ V++AC+ + +EG Q+H+ L++ LG
Sbjct: 303 SLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLK---------LG- 352
Query: 293 ALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVS 352
F+R ++ + T++V YAKA + AR F + ER+V
Sbjct: 353 ------------------FER----HLFATTALVDMYAKAGCLADARKGFDCLQERDVAL 390
Query: 353 WNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVV 412
W +LI+GY QN +NEEAL L+R +K + P T ++L AC++LA L+LG+Q H H +
Sbjct: 391 WTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTI 450
Query: 413 KHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGY 472
KHG ++ +G++L MY KCGS+EDG +F +D VSWNAMI G + NG
Sbjct: 451 KHGFGL------EVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQ 504
Query: 473 GTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYT 532
G EAL LF++ML G +PD VT + ++ ACSH G VE G YF+ MS + GL P DHY
Sbjct: 505 GDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYA 564
Query: 533 CMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS 592
CMVDLL RAG L EAK IE+ + +W LL+ACK H LG Y +KL+ +
Sbjct: 565 CMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSR 624
Query: 593 NSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPL 652
S YV LS +Y LGR +V RV K MR GV K+ GCSWIE+ +VF+V D HP+
Sbjct: 625 ESSTYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTMHPM 684
Query: 653 NKEIYLVLKMLTREMKRVGYVPNASDDEAYEEQNGSNSTS 692
+E ++ +++R+M G+V EE+ STS
Sbjct: 685 IEETKDLVCLVSRQMIEEGFVTVLDSSFVEEEEGTQLSTS 724
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 705 | ||||||
| 225425182 | 684 | PREDICTED: pentatricopeptide repeat-cont | 0.961 | 0.991 | 0.782 | 0.0 | |
| 357464699 | 705 | Pentatricopeptide repeat-containing prot | 1.0 | 1.0 | 0.739 | 0.0 | |
| 356544545 | 705 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 1.0 | 0.737 | 0.0 | |
| 224096022 | 710 | predicted protein [Populus trichocarpa] | 0.977 | 0.970 | 0.725 | 0.0 | |
| 296088715 | 654 | unnamed protein product [Vitis vinifera] | 0.919 | 0.990 | 0.748 | 0.0 | |
| 449462814 | 687 | PREDICTED: pentatricopeptide repeat-cont | 0.971 | 0.997 | 0.712 | 0.0 | |
| 15225445 | 697 | pentatricopeptide repeat-containing prot | 0.946 | 0.956 | 0.698 | 0.0 | |
| 297831842 | 697 | pentatricopeptide repeat-containing prot | 0.937 | 0.948 | 0.701 | 0.0 | |
| 255553249 | 628 | pentatricopeptide repeat-containing prot | 0.727 | 0.816 | 0.774 | 0.0 | |
| 242075862 | 688 | hypothetical protein SORBIDRAFT_06g01717 | 0.920 | 0.943 | 0.579 | 0.0 |
| >gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1114 bits (2882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/679 (78%), Positives = 597/679 (87%), Gaps = 1/679 (0%)
Query: 10 IVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGC 69
+V DL +SSPFAKLLDSCLRS+S TR VHARI+ +QF+ EIFIQNRLIDVY KC C
Sbjct: 6 LVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDC 65
Query: 70 LYGARKVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQH 129
L ARK+FD+M +N FTWNS+I+ L K GF+D+A+RLF SMPE DQCSWNSMVSGFAQH
Sbjct: 66 LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQH 125
Query: 130 DRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMG 189
DRF E+L YFVKMH E+F L+EYSFGSALSACAG +D MGTQVHAL+SKSRYS+DVYMG
Sbjct: 126 DRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMG 185
Query: 190 SALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIE 249
SALIDMY KCG V+CA VF GM ERN+V+WNSLITCYEQNGPAS+ALEVFVRMM SG+E
Sbjct: 186 SALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLE 245
Query: 250 PDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARC 309
PDEVTLASVVSACASL A KEGLQIHAR+++ K R+DLVLGNALVDMYAKC K+NEAR
Sbjct: 246 PDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARR 305
Query: 310 VFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEA 369
VFDRM IRNVVSETSMVSGYA+A+SVK+AR MF+KM +RNVVSWNALIAGYTQNGENEEA
Sbjct: 306 VFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEA 365
Query: 370 LGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVG 429
L LFRLLKRES+ PTHYTFGNLL+ACANLADL LGRQAHTHV+K G F SG ESDIFVG
Sbjct: 366 LRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVG 425
Query: 430 NSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEK 489
NSLIDMYMKCGS+EDG R+FE M ERD VSWNA+IVG AQNGYG EAL +F+KML+CGEK
Sbjct: 426 NSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEK 485
Query: 490 PDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKT 549
PDHVTMIGVLCACSHAGLVEEGR YF SM +EHGL PLKDHYTCMVDLLGRAGCL+EAK
Sbjct: 486 PDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGCLNEAKN 544
Query: 550 LIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGR 609
LIEAMP+ PDAV+WGSLLAACKVH NI +G++ A+KLLEI+P NSGPYVLLSNMYAELGR
Sbjct: 545 LIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGR 604
Query: 610 WGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKR 669
WG+VVRVRKLMR++GV KQPGCSWIE+ V+VF+VKDK HP K+IY VLKMLT +MKR
Sbjct: 605 WGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKR 664
Query: 670 VGYVPNASDDEAYEEQNGS 688
VGY+P+A+D EAY+EQ+ S
Sbjct: 665 VGYIPDANDFEAYDEQSKS 683
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1105 bits (2857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/705 (73%), Positives = 603/705 (85%)
Query: 1 MATQRSVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRL 60
MA V+++VGDL+FLDSSPFAKLLD+C++SKSV + R VHARIIK+QF+SEIFIQNRL
Sbjct: 1 MAKHGLVRKVVGDLSFLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRL 60
Query: 61 IDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWN 120
+DVY KCG L ARKVFD M +N F+WN+++ L K+G +D+A LF MPERDQCSWN
Sbjct: 61 VDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWN 120
Query: 121 SMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKS 180
+MVSGFAQ DRF EAL + V MHSE+F L+EYSFGSALSACAG +D +G Q+H L++KS
Sbjct: 121 AMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKS 180
Query: 181 RYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVF 240
RYS DVYMGSAL+DMY KC V+ A+R FD M RNIVSWNSLITCYEQNGPA ALEVF
Sbjct: 181 RYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVF 240
Query: 241 VRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAK 300
VRMM GIEPDE+TLASV SACASL+A +EGLQIHAR+M+ +K RNDLVLGNALVDMYAK
Sbjct: 241 VRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAK 300
Query: 301 CGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGY 360
C ++NEAR VFDRMP+R+VVSETSMVSGYAKASSVK+ARLMF+ M+ERNVVSWNALIAGY
Sbjct: 301 CRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGY 360
Query: 361 TQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLS 420
TQNGENEEA+ LF LLKRES+ PTHYTFGNLLNACANLADL+LGRQAHTH++KHG F S
Sbjct: 361 TQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKS 420
Query: 421 GEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLF 480
GE+SDIFVGNSLIDMYMKCG VEDG +FE M+ERD VSWNAMIVG AQNGYGTEAL +F
Sbjct: 421 GEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIF 480
Query: 481 KKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGR 540
++ML+ GE+PDHVTMIGVL ACSHAGLVEEGR YF SM+ EHGL P+KDHYTCMVDLLGR
Sbjct: 481 REMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGR 540
Query: 541 AGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLL 600
AGCLDEA LI+ MPM+PDAV+WGSLLAACKVH NI LG+YVA++LLEI+P NSGPYVLL
Sbjct: 541 AGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLL 600
Query: 601 SNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVL 660
SNMYAELGRW +VVRVRK MR+ GV+KQPGCSWI I H++VFMVKDKRHP K+IYL+L
Sbjct: 601 SNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISIQSHLHVFMVKDKRHPHKKDIYLIL 660
Query: 661 KMLTREMKRVGYVPNASDDEAYEEQNGSNSTSDCQIDFQVETAIA 705
K+LT +MKRVGYVP A DDE YEE++ S +++ V+ A+
Sbjct: 661 KILTEQMKRVGYVPEADDDEPYEEESDSELILHSEMETAVDAAVG 705
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1099 bits (2843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/705 (73%), Positives = 602/705 (85%)
Query: 1 MATQRSVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRL 60
M V+++VG+L FLDSSPFAKLLDSC+RSKS D RR+HARIIK+QF+SEIFIQNRL
Sbjct: 1 MGRHGFVQKLVGELCFLDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRL 60
Query: 61 IDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWN 120
+D Y KCG ARKVFD+M +N F++N++++ L K+G +D+A +F SMPE DQCSWN
Sbjct: 61 VDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWN 120
Query: 121 SMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKS 180
+MVSGFAQHDRF EAL +FV MHSE+F L+EYSFGSALSACAG D MG Q+HAL+SKS
Sbjct: 121 AMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKS 180
Query: 181 RYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVF 240
RY DVYMGSAL+DMY KCG V+CA+R FDGM RNIVSWNSLITCYEQNGPA ALEVF
Sbjct: 181 RYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVF 240
Query: 241 VRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAK 300
V MM +G+EPDE+TLASVVSACAS +A +EGLQIHAR+++ +K RNDLVLGNALVDMYAK
Sbjct: 241 VMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAK 300
Query: 301 CGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGY 360
C ++NEAR VFDRMP+RNVVSETSMV GYA+A+SVK+ARLMF+ M+E+NVVSWNALIAGY
Sbjct: 301 CRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGY 360
Query: 361 TQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLS 420
TQNGENEEA+ LF LLKRES+ PTHYTFGNLLNACANLADL+LGRQAHT ++KHG F S
Sbjct: 361 TQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQS 420
Query: 421 GEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLF 480
GEESDIFVGNSLIDMYMKCG VEDGC +FE MVERD VSWNAMIVG AQNGYGT AL +F
Sbjct: 421 GEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIF 480
Query: 481 KKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGR 540
+KML+ G+KPDHVTMIGVL ACSHAGLVEEGR+YF SM E GLAP+KDH+TCMVDLLGR
Sbjct: 481 RKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGR 540
Query: 541 AGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLL 600
AGCLDEA LI+ MPMQPD V+WGSLLAACKVH NI LG+YVA+KL+EI+P NSGPYVLL
Sbjct: 541 AGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLL 600
Query: 601 SNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVL 660
SNMYAELGRW +VVRVRK MR+RGV+KQPGCSWIEI V+VFMVKDKRHPL K+I+LVL
Sbjct: 601 SNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIEIQSRVHVFMVKDKRHPLKKDIHLVL 660
Query: 661 KMLTREMKRVGYVPNASDDEAYEEQNGSNSTSDCQIDFQVETAIA 705
K LT +MK GYVP A DDE EE++ S +++ + +TA+A
Sbjct: 661 KFLTEQMKWAGYVPEADDDEICEEESDSELVLHFEMETEADTAVA 705
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa] gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1082 bits (2797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/689 (72%), Positives = 596/689 (86%)
Query: 16 FLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARK 75
F DSSPFAKLLD C++ +S D R VH R+I++ F E+FIQNRLIDVY KCG L ARK
Sbjct: 21 FTDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARK 80
Query: 76 VFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEA 135
VFD+MS +NVF++NSII+ L++WGF+D+++ LF+ MPE+DQCSWNSM++GFAQHDRF EA
Sbjct: 81 VFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEA 140
Query: 136 LGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDM 195
L +FV+MH ++F L++YSFGS LSAC+ D K+G Q+H L+SKS+YS DV+MGS LID
Sbjct: 141 LDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDF 200
Query: 196 YGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTL 255
Y KCG V CARRVFDGM E+N+VSWN LITCYEQNGPA +ALE F RM G +PDEVTL
Sbjct: 201 YSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTL 260
Query: 256 ASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMP 315
ASVVSACA+LAAFKEG+QIHAR+++ +K RNDL+LGNALVDMYAKCG++NEARCVFDRMP
Sbjct: 261 ASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMP 320
Query: 316 IRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRL 375
+RN VSET+MVSGYAK++SVK+AR MF + ++++VSWNALIAGYTQNGENEEALGLFR+
Sbjct: 321 VRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRM 380
Query: 376 LKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDM 435
LKRESVCPTHYTFGNLLNA ANLADL+LGRQAH+HVVKHG RF SGEE DIFVGNSLIDM
Sbjct: 381 LKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDM 440
Query: 436 YMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTM 495
YMKCGSVE+G R+FE MVE+D VSWN MI+G AQNGYG EAL LF+KML GEKPDHVTM
Sbjct: 441 YMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTM 500
Query: 496 IGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMP 555
IG LCACSHAGLVEEGR+YF SM+KEHGL P+KDHYTCMVDLLGRAGCL+EAK LIE+MP
Sbjct: 501 IGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMP 560
Query: 556 MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVR 615
QPDAV+W SLL+ACKVHRNI LG+YVA+K+ EI+P++SGPYVLL+NMY+ELGRWG+ V
Sbjct: 561 KQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVS 620
Query: 616 VRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVPN 675
VRKLMR+RGVVKQPGCSWI+I +V+VFMVKDKRHP KEIY +LK+LT+ M++ GYVP+
Sbjct: 621 VRKLMRRRGVVKQPGCSWIDIQSNVHVFMVKDKRHPQKKEIYSILKLLTKHMRQAGYVPD 680
Query: 676 ASDDEAYEEQNGSNSTSDCQIDFQVETAI 704
ASD EAYEE + S+S ++ Q E A+
Sbjct: 681 ASDHEAYEEPSELESSSCFHMEMQAEAAV 709
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1052 bits (2721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/679 (74%), Positives = 573/679 (84%), Gaps = 31/679 (4%)
Query: 10 IVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGC 69
+V DL +SSPFAKLLDSCLRS+S TR VHARI+ +QF+ EIFIQNRLIDVY KC C
Sbjct: 6 LVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDC 65
Query: 70 LYGARKVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQH 129
L ARK+FD+M +N FTWNS+I+ L K GF+D+A+RLF SMPE DQCSWNSMVSGFAQH
Sbjct: 66 LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQH 125
Query: 130 DRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMG 189
DRF E+L YFVKMH E+F L+EYSFGSALSACAG +D MGTQVHAL+SKSRYS+DVYMG
Sbjct: 126 DRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMG 185
Query: 190 SALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIE 249
SALIDMY KCG V+CA VF GM ERN+V+WNSLITCYEQNGPAS+ALEVFVRMM SG+E
Sbjct: 186 SALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLE 245
Query: 250 PDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARC 309
PDEVTLASVVSACASL A KEGLQIHAR+++ K R+DLVLGNALVDMYAKC K+NEAR
Sbjct: 246 PDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARR 305
Query: 310 VFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEA 369
VFDRM IRNVVSETSMVSGYA+A+SVK+AR MF+KM +RNVVSWNALIAGYTQNGENEEA
Sbjct: 306 VFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEA 365
Query: 370 LGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVG 429
L LFRLLKRES+ PTHYTFGNLL +SDIFVG
Sbjct: 366 LRLFRLLKRESIWPTHYTFGNLL------------------------------KSDIFVG 395
Query: 430 NSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEK 489
NSLIDMYMKCGS+EDG R+FE M ERD VSWNA+IVG AQNGYG EAL +F+KML+CGEK
Sbjct: 396 NSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEK 455
Query: 490 PDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKT 549
PDHVTMIGVLCACSHAGLVEEGR YF SM +EHGL PLKDHYTCMVDLLGRAGCL+EAK
Sbjct: 456 PDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGCLNEAKN 514
Query: 550 LIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGR 609
LIEAMP+ PDAV+WGSLLAACKVH NI +G++ A+KLLEI+P NSGPYVLLSNMYAELGR
Sbjct: 515 LIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGR 574
Query: 610 WGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKR 669
WG+VVRVRKLMR++GV KQPGCSWIE+ V+VF+VKDK HP K+IY VLKMLT +MKR
Sbjct: 575 WGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKR 634
Query: 670 VGYVPNASDDEAYEEQNGS 688
VGY+P+A+D EAY+EQ+ S
Sbjct: 635 VGYIPDANDFEAYDEQSKS 653
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis sativus] gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1038 bits (2684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/685 (71%), Positives = 571/685 (83%)
Query: 1 MATQRSVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRL 60
MA VK + GDL FLDSSPF+KLL+ C RS+S DT RVHA IIKS FASE FIQNRL
Sbjct: 1 MAGNGLVKHLKGDLLFLDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRL 60
Query: 61 IDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWN 120
IDVY KCGC+ ARK+FD+M +N+F+WNSII K GF+DDA +F MP+ DQCSWN
Sbjct: 61 IDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWN 120
Query: 121 SMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKS 180
SM+SGF QH RF EAL YF +MH F ++EYSFGSALSACAG D K+G+Q+H+L+ +S
Sbjct: 121 SMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRS 180
Query: 181 RYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVF 240
Y SDVYMGSAL+DMY KCGRV A+ VFD M R+ VSWNSLITCYEQNGP +AL++F
Sbjct: 181 NYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIF 240
Query: 241 VRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAK 300
V M+ G+EPDEVTLASVVSACA+++A KEG QIHAR+++C++ RNDL+LGNAL+DMYAK
Sbjct: 241 VEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAK 300
Query: 301 CGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGY 360
C ++NEAR +FD MPIR+VVSETSMVSGYAKAS VK AR MF+ M+ ++V++WNALIAG
Sbjct: 301 CNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGC 360
Query: 361 TQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLS 420
TQNGENEEAL LFRLLKRESV PTHYTFGNLLNACANLADLQLGRQAH+HV+KHG RF
Sbjct: 361 TQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQY 420
Query: 421 GEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLF 480
GE+SD+FVGNSLIDMYMKCGSVE+GCR+F+ M+E+D VSWNAMIVG AQNG+G +AL +F
Sbjct: 421 GEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVF 480
Query: 481 KKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGR 540
KML GE PDHVTMIGVLCACSHAGL++EGR YF SM+ +HGL PLKDHYTCMVDLLGR
Sbjct: 481 CKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGR 540
Query: 541 AGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLL 600
AG L+EAK LIE M MQPDA++WGSLLAACKVHRNI LGEYV KKLLE++P NSGPYVLL
Sbjct: 541 AGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLL 600
Query: 601 SNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVL 660
SNMYAE W VVRVRKLMR+RGVVKQPGCSWIEI G +NVFMVKDKRH KEIY+VL
Sbjct: 601 SNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIEIQGELNVFMVKDKRHARKKEIYMVL 660
Query: 661 KMLTREMKRVGYVPNASDDEAYEEQ 685
+ + ++MK+ GYVP +E E++
Sbjct: 661 RTILQQMKQAGYVPYVGSNEFDEDE 685
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana] gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/670 (69%), Positives = 558/670 (83%), Gaps = 3/670 (0%)
Query: 1 MATQRSVKQIVGDLA-FLDSSPFAKLLDSCLRSK-SVSDTRRVHARIIKSQFASEIFIQN 58
MAT +S ++ DL+ F DSSPFAKLLDSC++SK S R VHA +IKS F++EIFIQN
Sbjct: 1 MAT-KSFLKLAADLSSFTDSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQN 59
Query: 59 RLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCS 118
RLID Y+KCG L R+VFDKM +N++TWNS++TGL K GF+D+A LF SMPERDQC+
Sbjct: 60 RLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCT 119
Query: 119 WNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLS 178
WNSMVSGFAQHDR EAL YF MH E F L+EYSF S LSAC+G D G QVH+L++
Sbjct: 120 WNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIA 179
Query: 179 KSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALE 238
KS + SDVY+GSAL+DMY KCG V+ A+RVFD M +RN+VSWNSLITC+EQNGPA +AL+
Sbjct: 180 KSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALD 239
Query: 239 VFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMY 298
VF M+ S +EPDEVTLASV+SACASL+A K G ++H R+++ +KLRND++L NA VDMY
Sbjct: 240 VFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMY 299
Query: 299 AKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIA 358
AKC ++ EAR +FD MPIRNV++ETSM+SGYA A+S K+ARLMFTKM ERNVVSWNALIA
Sbjct: 300 AKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIA 359
Query: 359 GYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRF 418
GYTQNGENEEAL LF LLKRESVCPTHY+F N+L ACA+LA+L LG QAH HV+KHG +F
Sbjct: 360 GYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKF 419
Query: 419 LSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALG 478
SGEE DIFVGNSLIDMY+KCG VE+G +F M+ERD VSWNAMI+G AQNGYG EAL
Sbjct: 420 QSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALE 479
Query: 479 LFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLL 538
LF++ML GEKPDH+TMIGVL AC HAG VEEGR YFSSM+++ G+APL+DHYTCMVDLL
Sbjct: 480 LFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLL 539
Query: 539 GRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYV 598
GRAG L+EAK++IE MPMQPD+VIWGSLLAACKVHRNI LG+YVA+KLLE+EPSNSGPYV
Sbjct: 540 GRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYV 599
Query: 599 LLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYL 658
LLSNMYAELG+W +V+ VRK MRK GV KQPGCSWI+I GH +VFMVKDK HP K+I+
Sbjct: 600 LLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHS 659
Query: 659 VLKMLTREMK 668
+L +L EM+
Sbjct: 660 LLDILIAEMR 669
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 990 bits (2559), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/663 (70%), Positives = 553/663 (83%), Gaps = 2/663 (0%)
Query: 9 QIVGDLA-FLDSSPFAKLLDSCLRSK-SVSDTRRVHARIIKSQFASEIFIQNRLIDVYAK 66
++ GDL+ F SSPFAKLLDSC++ K S D R VHA +IKS F++E+FIQNRLID YAK
Sbjct: 8 KLAGDLSSFTVSSPFAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAK 67
Query: 67 CGCLYGARKVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGF 126
CG L R++FDKM +NVFTWNS++TGL K GF+D+A LF SMPERDQC+WNSMVSGF
Sbjct: 68 CGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGF 127
Query: 127 AQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDV 186
AQHDR EAL YF MH E F L+EY+F S LSAC+G D G Q+H+L++KS SDV
Sbjct: 128 AQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDV 187
Query: 187 YMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMAS 246
Y+GSAL+DMY KCG V+ A++VFD M +RN+VSWNSLITCYEQNGPA +AL+VF M+ S
Sbjct: 188 YIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLES 247
Query: 247 GIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNE 306
+EPDEVTLASV+SACASL+A K G ++HAR+++ +KLRND++L NA VDMYAKC ++ E
Sbjct: 248 WVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKE 307
Query: 307 ARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGEN 366
AR +FD MPIRNV++ETSMVSGYA A+S K+ARLMFTKM ERNVVSWNALIAGYTQNGEN
Sbjct: 308 ARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGEN 367
Query: 367 EEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDI 426
EEAL LF LLKRESVCPTHYTF N+L ACA+LADL LG QAH HV+KHG +F SGEE DI
Sbjct: 368 EEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDI 427
Query: 427 FVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLC 486
FVGNSLIDMY+KCG VE+G +F M+ERD VSWNAMI+G AQNGYG EAL LF++ML
Sbjct: 428 FVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDS 487
Query: 487 GEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDE 546
GEKPDH+TMIGVL AC HAG VEEGR YFSSM+++ G+APL+DHYTCMVDLLGRAG L+E
Sbjct: 488 GEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEE 547
Query: 547 AKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAE 606
AK++IE MP+QPD+VIWGSLLAACKVHRNI LG+YVA+KL E+E SNSGPYVLLSNMYAE
Sbjct: 548 AKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAE 607
Query: 607 LGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTRE 666
LG+WG+ + VRKLMRK GV KQPGCSWI+I GH +VFMVKDK HP K+I+ +L +L E
Sbjct: 608 LGKWGDAMNVRKLMRKEGVTKQPGCSWIKIPGHAHVFMVKDKSHPRKKQIHSLLDILIAE 667
Query: 667 MKR 669
M++
Sbjct: 668 MRQ 670
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553249|ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223543299|gb|EEF44831.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/524 (77%), Positives = 470/524 (89%)
Query: 1 MATQRSVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRL 60
M+ VK+IVGDL+FLDSSPFAKLLDSCL+SKS+ DTRR+HARIIK+QFA E+FIQNRL
Sbjct: 1 MSKHGFVKKIVGDLSFLDSSPFAKLLDSCLKSKSLRDTRRIHARIIKTQFAYEVFIQNRL 60
Query: 61 IDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWN 120
ID Y KCGC ARK+FD+M KNVF+WN+I++ L+K GF+D+ +RLF SMPE DQCSWN
Sbjct: 61 IDAYGKCGCFDDARKIFDQMPEKNVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWN 120
Query: 121 SMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKS 180
S+++GFAQHDRF EAL YFVKMH + F L+EY+FGS LSACAG D K+GTQ+H L+ KS
Sbjct: 121 SLIAGFAQHDRFEEALNYFVKMHRKGFVLNEYTFGSGLSACAGLKDLKIGTQIHGLMLKS 180
Query: 181 RYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVF 240
++ DVYMGSALID+Y KCG V CA+RVFDGM ERN+VSWNSLITCYEQNGP+ +ALE+F
Sbjct: 181 QFLLDVYMGSALIDIYSKCGFVDCAQRVFDGMMERNVVSWNSLITCYEQNGPSREALEIF 240
Query: 241 VRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAK 300
+RMM SG EPDEVTLASVVSACASLAA K+GL+IHA +++ +KLR+DL+L NALVDMYAK
Sbjct: 241 MRMMESGFEPDEVTLASVVSACASLAAAKQGLEIHACVVKRDKLRDDLILSNALVDMYAK 300
Query: 301 CGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGY 360
CG++NEARCVFDRMPIRNVVSETSMVSGYAK +SVK+ARL+FTKM+ERNVVSWNALIAGY
Sbjct: 301 CGRINEARCVFDRMPIRNVVSETSMVSGYAKTASVKAARLLFTKMIERNVVSWNALIAGY 360
Query: 361 TQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLS 420
TQNGENEEAL LFR+LKRE++CPTHYTFGNLLNACANLADLQLGRQAH HV+KHG RF
Sbjct: 361 TQNGENEEALRLFRMLKREAICPTHYTFGNLLNACANLADLQLGRQAHAHVLKHGFRFQY 420
Query: 421 GEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLF 480
GEESD+FVGN+LIDMYMKCGSVE+GCRIFE MVERD+VSWNAMIVG AQNGYG EALGLF
Sbjct: 421 GEESDVFVGNALIDMYMKCGSVEEGCRIFENMVERDYVSWNAMIVGYAQNGYGMEALGLF 480
Query: 481 KKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGL 524
+KML GEKPDHVTMIG LCACSHAGLV+EGRK+FSSM++E+GL
Sbjct: 481 RKMLASGEKPDHVTMIGALCACSHAGLVQEGRKHFSSMTEEYGL 524
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor] gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/654 (57%), Positives = 506/654 (77%), Gaps = 5/654 (0%)
Query: 19 SSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFD 78
SSP A LL S + ++S R HARI+KS A E F+ N L+ YA+ G L AR+VFD
Sbjct: 20 SSPLADLLRS---APNLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFD 76
Query: 79 KMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDR--FSEAL 136
++ +N F++N++++ + G D+A LF ++P+ DQCS+N++V+ A+H R ++AL
Sbjct: 77 EIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADAL 136
Query: 137 GYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMY 196
+ MH+++F L+ YSF SALSACA D + G QVH L+++S ++ DV++ SAL+DMY
Sbjct: 137 RFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMY 196
Query: 197 GKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLA 256
KC R ARRVFD M ERN+VSWNSLITCYEQNGP +AL +FV MMA+G PDEVTL+
Sbjct: 197 AKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLS 256
Query: 257 SVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPI 316
SV+SACA LAA +EG Q+HA +++C++LR+D+VL NALVDMYAKCG+ EARC+FD MP
Sbjct: 257 SVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPS 316
Query: 317 RNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLL 376
R++VSETS+++GYAK+++V+ A+++F++M+E+NV++WN LIA Y QNGE EEA+ LF L
Sbjct: 317 RSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQL 376
Query: 377 KRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMY 436
KR+S+ PTHYT+GN+LNAC N+ADLQLG+QAH HV+K G RF G ESD+FVGNSL+DMY
Sbjct: 377 KRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMY 436
Query: 437 MKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMI 496
+K GS++DG ++FE M RD VSWNAMIVG AQNG +AL LF++ML E PD VTMI
Sbjct: 437 LKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMI 496
Query: 497 GVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPM 556
GVL AC H+GLV+EGR+YF SM+++HG+ P +DHYTCMVDLLGRAG L EA+ LI MPM
Sbjct: 497 GVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPM 556
Query: 557 QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRV 616
+PD+V+W SLL AC++H+N+ LGE+ A +L E++P NSGPYVLLSNMYAE+G+W EV RV
Sbjct: 557 EPDSVLWASLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRV 616
Query: 617 RKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRV 670
R+ M+ RGV KQPGCSWIEI +NVF+ +DKRHP EI+ L+++ EM R
Sbjct: 617 RRSMKDRGVSKQPGCSWIEIGRKMNVFLARDKRHPCRNEIHNTLRIIQMEMGRT 670
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 705 | ||||||
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.946 | 0.956 | 0.668 | 8.4e-248 | |
| TAIR|locus:2078653 | 825 | AT3G02010 [Arabidopsis thalian | 0.493 | 0.421 | 0.411 | 1.8e-114 | |
| TAIR|locus:2141171 | 857 | AT4G21300 [Arabidopsis thalian | 0.489 | 0.402 | 0.369 | 3.5e-113 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.500 | 0.436 | 0.391 | 1.3e-109 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.517 | 0.376 | 0.372 | 7.2e-107 | |
| TAIR|locus:2032840 | 937 | AT1G16480 "AT1G16480" [Arabido | 0.513 | 0.386 | 0.362 | 8.1e-106 | |
| TAIR|locus:2083961 | 768 | AT3G53360 "AT3G53360" [Arabido | 0.441 | 0.404 | 0.438 | 9.4e-105 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.866 | 0.782 | 0.377 | 5.3e-104 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.821 | 0.784 | 0.353 | 3.7e-103 | |
| TAIR|locus:2032955 | 790 | AT1G25360 "AT1G25360" [Arabido | 0.904 | 0.807 | 0.348 | 3.3e-102 |
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2387 (845.3 bits), Expect = 8.4e-248, P = 8.4e-248
Identities = 448/670 (66%), Positives = 533/670 (79%)
Query: 1 MATQRSVKQIVGDLA-FLDSSPFAKLLDSCLRSK-SVSDTRRVHARIIKSQFASEIFIQN 58
MAT+ +K + DL+ F DSSPFAKLLDSC++SK S R VHA +IKS F++EIFIQN
Sbjct: 1 MATKSFLK-LAADLSSFTDSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQN 59
Query: 59 RLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCS 118
RLID Y+KCG L R+VFDKM +N++TWNS++TGL K GF+D+A LF SMPERDQC+
Sbjct: 60 RLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCT 119
Query: 119 WNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLS 178
WNSMVSGFAQHDR EAL YF MH E F L+EYSF S LSAC+G D G QVH+L++
Sbjct: 120 WNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIA 179
Query: 179 KSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALE 238
KS + SDVY+GSAL+DMY KCG V+ A+RVFD M +RN+VSWNSLITC+EQNGPA +AL+
Sbjct: 180 KSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALD 239
Query: 239 VFVRMMASGIEPDEVTXXXXXXXXXXXXXFKEGLQIHARLMRCEKLRNDLVLGNALVDMY 298
VF M+ S +EPDEVT K G ++H R+++ +KLRND++L NA VDMY
Sbjct: 240 VFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMY 299
Query: 299 AKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIA 358
AKC ++ EAR +FD MPIRNV++ETSM+SGYA A+S K+ARLMFTKM ERNVVSWNALIA
Sbjct: 300 AKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIA 359
Query: 359 GYTQNGENEEALGLFRLLKRESVCPTHYTFGXXXXXXXXXXXXXXGRQAHTHVVKHGLRF 418
GYTQNGENEEAL LF LLKRESVCPTHY+F G QAH HV+KHG +F
Sbjct: 360 GYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKF 419
Query: 419 LSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALG 478
SGEE DIFVGNSLIDMY+KCG VE+G +F M+ERD VSWNAMI+G AQNGYG EAL
Sbjct: 420 QSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALE 479
Query: 479 LFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLL 538
LF++ML GEKPDH+TMIGVL AC HAG VEEGR YFSSM+++ G+APL+DHYTCMVDLL
Sbjct: 480 LFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLL 539
Query: 539 GRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYV 598
GRAG L+EAK++IE MPMQPD+VIWGSLLAACKVHRNI LG+YVA+KLLE+EPSNSGPYV
Sbjct: 540 GRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYV 599
Query: 599 LLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYL 658
LLSNMYAELG+W +V+ VRK MRK GV KQPGCSWI+I GH +VFMVKDK HP K+I+
Sbjct: 600 LLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHS 659
Query: 659 VLKMLTREMK 668
+L +L EM+
Sbjct: 660 LLDILIAEMR 669
|
|
| TAIR|locus:2078653 AT3G02010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 750 (269.1 bits), Expect = 1.8e-114, Sum P(2) = 1.8e-114
Identities = 146/355 (41%), Positives = 213/355 (60%)
Query: 324 SMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCP 383
S+V YAK + A L+F + +R VSW ALI+GY Q G + L LF ++ ++
Sbjct: 391 SLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRA 450
Query: 384 THYTFGXXXXXXXXXXXXXXGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVE 443
TF G+Q H +++ SG ++F G+ L+DMY KCGS++
Sbjct: 451 DQSTFATVLKASASFASLLLGKQLHAFIIR------SGNLENVFSGSGLVDMYAKCGSIK 504
Query: 444 DGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACS 503
D ++FE M +R+ VSWNA+I A NG G A+G F KM+ G +PD V+++GVL ACS
Sbjct: 505 DAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS 564
Query: 504 HAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIW 563
H G VE+G +YF +MS +G+ P K HY CM+DLLGR G EA+ L++ MP +PD ++W
Sbjct: 565 HCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMW 624
Query: 564 GSLLAACKVHRNIMLGEYVAKKLLEIEP-SNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622
S+L AC++H+N L E A+KL +E ++ YV +SN+YA G W +V V+K MR+
Sbjct: 625 SSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRE 684
Query: 623 RGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVPNAS 677
RG+ K P SW+E+ ++VF D+ HP EI + LT E++R GY P+ S
Sbjct: 685 RGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTS 739
|
|
| TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 3.5e-113, Sum P(3) = 3.5e-113
Identities = 130/352 (36%), Positives = 213/352 (60%)
Query: 324 SMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCP 383
+++ YAK + A +F ++ +R++VSWN++I Q+ A+ +FR + +C
Sbjct: 481 AVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICY 540
Query: 384 THYTFGXXXXXXXXXXXXXXGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVE 443
+ G+ H ++KH L SD++ ++LIDMY KCG+++
Sbjct: 541 DCVSISAALSACANLPSESFGKAIHGFMIKHSLA------SDVYSESTLIDMYAKCGNLK 594
Query: 444 DGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKML-LCGEKPDHVTMIGVLCAC 502
+F+TM E++ VSWN++I C +G ++L LF +M+ G +PD +T + ++ +C
Sbjct: 595 AAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSC 654
Query: 503 SHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVI 562
H G V+EG ++F SM++++G+ P ++HY C+VDL GRAG L EA +++MP PDA +
Sbjct: 655 CHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGV 714
Query: 563 WGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622
WG+LL AC++H+N+ L E + KL++++PSNSG YVL+SN +A W V +VR LM++
Sbjct: 715 WGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKE 774
Query: 623 RGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVP 674
R V K PG SWIEI ++F+ D HP + IY +L L E++ GY+P
Sbjct: 775 REVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEGYIP 826
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 665 (239.2 bits), Expect = 1.3e-109, Sum P(2) = 1.3e-109
Identities = 142/363 (39%), Positives = 208/363 (57%)
Query: 317 RNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLL 376
RNV S++S Y K V +A MF K+ R +VSWNA+I G+ QNG +AL F +
Sbjct: 370 RNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQM 429
Query: 377 KRESVCPTHYTFGXXXXXXXXXXXXXXGRQAHTHVVK--HGLRFLSGEESDIFVGNSLID 434
+ +V P +T+ + TH K HG+ S + ++FV +L+D
Sbjct: 430 RSRTVKPDTFTY--------VSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVD 481
Query: 435 MYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVT 494
MY KCG++ IF+ M ER +WNAMI G +G+G AL LF++M KP+ VT
Sbjct: 482 MYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVT 541
Query: 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM 554
+ V+ ACSH+GLVE G K F M + + + DHY MVDLLGRAG L+EA I M
Sbjct: 542 FLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQM 601
Query: 555 PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVV 614
P++P ++G++L AC++H+N+ E A++L E+ P + G +VLL+N+Y W +V
Sbjct: 602 PVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVG 661
Query: 615 RVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVP 674
+VR M ++G+ K PGCS +EI V+ F HP +K+IY L+ L +K GYVP
Sbjct: 662 QVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVP 721
Query: 675 NAS 677
+ +
Sbjct: 722 DTN 724
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 660 (237.4 bits), Expect = 7.2e-107, Sum P(3) = 7.2e-107
Identities = 141/379 (37%), Positives = 216/379 (56%)
Query: 317 RNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLL 376
R++ S++S Y + + + +F M ++++VSWN +I GY QNG + ALG+FR +
Sbjct: 529 RDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQM 588
Query: 377 KRESVCPTHYTFGXXXXXXXXXXXXXXGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMY 436
+ + GR+AH + +KH L E D F+ SLIDMY
Sbjct: 589 VLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLL------EDDAFIACSLIDMY 642
Query: 437 MKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMI 496
K GS+ ++F + E+ SWNAMI+G +G EA+ LF++M G PD +T +
Sbjct: 643 AKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFL 702
Query: 497 GVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEA-KTLIEAMP 555
GVL AC+H+GL+ EG +Y M GL P HY C++D+LGRAG LD+A + + E M
Sbjct: 703 GVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMS 762
Query: 556 MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVR 615
+ D IW SLL++C++H+N+ +GE VA KL E+EP YVLLSN+YA LG+W +V +
Sbjct: 763 EEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRK 822
Query: 616 VRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVPN 675
VR+ M + + K GCSWIE+ V F+V ++ +EI + +L ++ ++GY P+
Sbjct: 823 VRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPD 882
Query: 676 A-------SDDEAYEEQNG 687
S++E E+ G
Sbjct: 883 TMSVQHDLSEEEKIEQLRG 901
|
|
| TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 668 (240.2 bits), Expect = 8.1e-106, Sum P(3) = 8.1e-106
Identities = 134/370 (36%), Positives = 206/370 (55%)
Query: 322 ETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESV 381
+ S+++ YAK + S++ +F + RN+++WNA++A +G EE L L ++ V
Sbjct: 502 KNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGV 561
Query: 382 CPTHYTFGXXXXXXXXXXXXXXGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGS 441
++F G+Q H VK G E D F+ N+ DMY KCG
Sbjct: 562 SLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGF------EHDSFIFNAAADMYSKCGE 615
Query: 442 VEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCA 501
+ + ++ V R SWN +I ++GY E F +ML G KP HVT + +L A
Sbjct: 616 IGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTA 675
Query: 502 CSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAV 561
CSH GLV++G Y+ ++++ GL P +H C++DLLGR+G L EA+T I MPM+P+ +
Sbjct: 676 CSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDL 735
Query: 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621
+W SLLA+CK+H N+ G A+ L ++EP + YVL SNM+A GRW +V VRK M
Sbjct: 736 VWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMG 795
Query: 622 KRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVPNASD--D 679
+ + K+ CSW+++ V+ F + D+ HP EIY L+ + + +K GYV + S
Sbjct: 796 FKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQ 855
Query: 680 EAYEEQNGSN 689
+ EEQ N
Sbjct: 856 DTDEEQKEHN 865
|
|
| TAIR|locus:2083961 AT3G53360 "AT3G53360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 686 (246.5 bits), Expect = 9.4e-105, Sum P(2) = 9.4e-105
Identities = 139/317 (43%), Positives = 195/317 (61%)
Query: 351 VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGXXXXXXXXXXXXXXGRQAHTH 410
VSWN ++ Q+ + E L LF+L+ P H T G G Q H +
Sbjct: 439 VSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCY 498
Query: 411 VVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQN 470
+K GL + E+ F+ N LIDMY KCGS+ RIF++M RD VSW+ +IVG AQ+
Sbjct: 499 SLKTGL---APEQ---FIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQS 552
Query: 471 GYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDH 530
G+G EAL LFK+M G +P+HVT +GVL ACSH GLVEEG K +++M EHG++P K+H
Sbjct: 553 GFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEH 612
Query: 531 YTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIE 590
+C+VDLL RAG L+EA+ I+ M ++PD V+W +LL+ACK N+ L + A+ +L+I+
Sbjct: 613 CSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKID 672
Query: 591 PSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRH 650
P NS +VLL +M+A G W +R M+K V K PG SWIEI +++F +D H
Sbjct: 673 PFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFH 732
Query: 651 PLNKEIYLVLKMLTREM 667
P +IY VL + +M
Sbjct: 733 PERDDIYTVLHNIWSQM 749
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
Identities = 245/649 (37%), Positives = 357/649 (55%)
Query: 52 SEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASM 111
S+I N I Y + G A +VF +M + ++N +I+G L+ G + A +LF M
Sbjct: 62 SDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM 121
Query: 112 PERDQCSWNSMVSGFAQHDRFSEALGYFVKMH-----SENFALSEYSFGSALSACAGSVD 166
PERD SWN M+ G+ ++ +A F M S N LS Y+ + D
Sbjct: 122 PERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFD 181
Query: 167 F---KMGTQVHALLS---------------KSRYSSDVYMGSALIDMYGKCGRVSCARRV 208
K +ALLS KSR + + + L+ + K ++ AR+
Sbjct: 182 RMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQF 241
Query: 209 FDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTXXXXXXXXXXXXXF 268
FD M R++VSWN++IT Y Q+G +A ++F S ++ D T
Sbjct: 242 FDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE---SPVQ-DVFTWTAMVSGYIQNRMV 297
Query: 269 KEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSG 328
+E ++ ++ RN+ V NA++ Y + ++ A+ +FD MP RNV + +M++G
Sbjct: 298 EEARELFDKMPE----RNE-VSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITG 352
Query: 329 YAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTF 388
YA+ + A+ +F KM +R+ VSW A+IAGY+Q+G + EAL LF ++RE +F
Sbjct: 353 YAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSF 412
Query: 389 GXXXXXXXXXXXXXXGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRI 448
G+Q H +VK G E+ FVGN+L+ MY KCGS+E+ +
Sbjct: 413 SSALSTCADVVALELGKQLHGRLVK------GGYETGCFVGNALLLMYCKCGSIEEANDL 466
Query: 449 FETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLV 508
F+ M +D VSWN MI G +++G+G AL F+ M G KPD TM+ VL ACSH GLV
Sbjct: 467 FKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLV 526
Query: 509 EEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLA 568
++GR+YF +M++++G+ P HY CMVDLLGRAG L++A L++ MP +PDA IWG+LL
Sbjct: 527 DKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLG 586
Query: 569 ACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQ 628
A +VH N L E A K+ +EP NSG YVLLSN+YA GRWG+V ++R MR +GV K
Sbjct: 587 ASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKV 646
Query: 629 PGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVPNAS 677
PG SWIEI + F V D+ HP EI+ L+ L MK+ GYV S
Sbjct: 647 PGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTS 695
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
Identities = 208/588 (35%), Positives = 337/588 (57%)
Query: 92 ITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFAL-S 150
+ L + ++ A ++F +P+ + +WN+++ +A ++ F+ M SE+ +
Sbjct: 71 MAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPN 130
Query: 151 EYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFD 210
+Y+F + A A +G +H + KS SDV++ ++LI Y CG + A +VF
Sbjct: 131 KYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFT 190
Query: 211 GMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTXXXXXXXXXXXXXFKE 270
++E+++VSWNS+I + Q G ALE+F +M + ++ VT +
Sbjct: 191 TIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEF 250
Query: 271 GLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYA 330
G Q+ + + ++ +L L NA++DMY KCG + +A+ +FD M ++ V+ T+M+ GYA
Sbjct: 251 GRQVCSYIEE-NRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYA 309
Query: 331 KASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLK-RESVCPTHYTFG 389
+ ++AR + M ++++V+WNALI+ Y QNG+ EAL +F L+ ++++ T
Sbjct: 310 ISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLV 369
Query: 390 XXXXXXXXXXXXXXGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIF 449
GR H+++ KHG+R + V ++LI MY KCG +E +F
Sbjct: 370 STLSACAQVGALELGRWIHSYIKKHGIRM------NFHVTSALIHMYSKCGDLEKSREVF 423
Query: 450 ETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVE 509
++ +RD W+AMI G A +G G EA+ +F KM KP+ VT V CACSH GLV+
Sbjct: 424 NSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVD 483
Query: 510 EGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAA 569
E F M +G+ P + HY C+VD+LGR+G L++A IEAMP+ P +WG+LL A
Sbjct: 484 EAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGA 543
Query: 570 CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQP 629
CK+H N+ L E +LLE+EP N G +VLLSN+YA+LG+W V +RK MR G+ K+P
Sbjct: 544 CKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEP 603
Query: 630 GCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVPNAS 677
GCS IEI G ++ F+ D HP+++++Y L + ++K GY P S
Sbjct: 604 GCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEIS 651
|
|
| TAIR|locus:2032955 AT1G25360 "AT1G25360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
Identities = 232/666 (34%), Positives = 369/666 (55%)
Query: 24 KLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDK--MS 81
+L+D +S ++ R++ I + + + ++ Y G + AR VF+K +
Sbjct: 54 RLIDVYCKSSELNYARQLFDEISEP----DKIARTTMVSGYCASGDITLARGVFEKAPVC 109
Query: 82 NKNVFTWNSIITGLLKWGFIDDASRLFASMPER----DQCSWNSMVSGFAQHDRFSEALG 137
++ +N++ITG A LF M D ++ S+++G A ++
Sbjct: 110 MRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLAL---VADDEK 166
Query: 138 YFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVY-----MGSAL 192
V+ H+ S + +++S SV K + L S + ++ + +
Sbjct: 167 QCVQFHAAALK-SGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTM 225
Query: 193 IDMYGKCGRVSCARRVFDGMRER-NIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPD 251
+ Y K G + +GM + +V++N++I+ Y G +ALE+ RM++SGIE D
Sbjct: 226 MTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELD 285
Query: 252 EVTXXXXXXXXXXXXXFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVF 311
E T + G Q+HA ++R E N+LV +Y KCGK +EAR +F
Sbjct: 286 EFTYPSVIRACATAGLLQLGKQVHAYVLRREDF--SFHFDNSLVSLYYKCGKFDEARAIF 343
Query: 312 DRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALG 371
++MP +++VS +++SGY + + A+L+F +M E+N++SW +I+G +NG EE L
Sbjct: 344 EKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLK 403
Query: 372 LFRLLKRESVCPTHYTFGXXXXXXXXXXXXXXGRQAHTHVVKHGLRFLSGEESDIFVGNS 431
LF +KRE P Y F G+Q H ++K G +S + GN+
Sbjct: 404 LFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGF------DSSLSAGNA 457
Query: 432 LIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD 491
LI MY KCG VE+ ++F TM D VSWNA+I Q+G+G EA+ ++++ML G +PD
Sbjct: 458 LITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPD 517
Query: 492 HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLI 551
+T++ VL ACSHAGLV++GRKYF SM + + P DHY ++DLL R+G +A+++I
Sbjct: 518 RITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVI 577
Query: 552 EAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWG 611
E++P +P A IW +LL+ C+VH N+ LG A KL + P + G Y+LLSNM+A G+W
Sbjct: 578 ESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWE 637
Query: 612 EVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVG 671
EV RVRKLMR RGV K+ CSWIE+ V+ F+V D HP + +Y+ L+ L +EM+R+G
Sbjct: 638 EVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLG 697
Query: 672 YVPNAS 677
YVP+ S
Sbjct: 698 YVPDTS 703
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SIT7 | PP151_ARATH | No assigned EC number | 0.6985 | 0.9460 | 0.9569 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 705 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-157 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-124 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-78 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-67 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-65 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-40 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 476 bits (1226), Expect = e-157
Identities = 235/671 (35%), Positives = 363/671 (54%), Gaps = 73/671 (10%)
Query: 18 DSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVF 77
D F +L +C ++ R VHA +++ F ++ + N LI +Y KCG + AR VF
Sbjct: 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245
Query: 78 DKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALG 137
D+M P RD SWN+M+SG+ ++ E L
Sbjct: 246 DRM-------------------------------PRRDCISWNAMISGYFENGECLEGLE 274
Query: 138 YFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYG 197
F M + + S +SAC D ++G ++H + K+ ++ DV + ++LI MY
Sbjct: 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334
Query: 198 KCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLAS 257
G A +VF M ++ VSW ++I+ YE+NG ALE + M + PDE+T+AS
Sbjct: 335 SLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394
Query: 258 VVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIR 317
V+SACA L G+++H L + L + +V+ NAL++MY+KC +++A VF +P
Sbjct: 395 VLSACACLGDLDVGVKLH-ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-- 451
Query: 318 NVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLK 377
E++V+SW ++IAG N EAL FR +
Sbjct: 452 -----------------------------EKDVISWTSIIAGLRLNNRCFEALIFFRQML 482
Query: 378 RESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYM 437
++ P T L+ACA + L G++ H HV++ G+ F D F+ N+L+D+Y+
Sbjct: 483 L-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF------DGFLPNALLDLYV 535
Query: 438 KCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIG 497
+CG + F + E+D VSWN ++ G +G G+ A+ LF +M+ G PD VT I
Sbjct: 536 RCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594
Query: 498 VLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQ 557
+LCACS +G+V +G +YF SM +++ + P HY C+VDLLGRAG L EA I MP+
Sbjct: 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT 654
Query: 558 PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVR 617
PD +WG+LL AC++HR++ LGE A+ + E++P++ G Y+LL N+YA+ G+W EV RVR
Sbjct: 655 PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVR 714
Query: 618 KLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVPNAS 677
K MR+ G+ PGCSW+E+ G V+ F+ D+ HP KEI VL+ +MK G S
Sbjct: 715 KTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGL--AGS 772
Query: 678 DDEAYEEQNGS 688
+ + +E S
Sbjct: 773 ESSSMDEIEVS 783
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 386 bits (992), Expect = e-124
Identities = 181/548 (33%), Positives = 288/548 (52%), Gaps = 45/548 (8%)
Query: 131 RFSEALGYFVKMHSE-NFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMG 189
R EAL F + + F L ++ + + AC + V+ + S + D YM
Sbjct: 102 RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161
Query: 190 SALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIE 249
+ ++ M+ KCG + ARR+FD M ERN+ SW ++I G +A +F M G +
Sbjct: 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD 221
Query: 250 PDEVTLASVVSACASLAAFKEGLQIH---ARLMRCEKLRNDLVLGNALVDMYAKCGKLNE 306
+ T ++ A A L + + G Q+H + D + AL+DMY+KCG + +
Sbjct: 222 AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG----DTFVSCALIDMYSKCGDIED 277
Query: 307 ARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGEN 366
ARCVFD MP E+ V+WN+++AGY +G +
Sbjct: 278 ARCVFDGMP-------------------------------EKTTVAWNSMLAGYALHGYS 306
Query: 367 EEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDI 426
EEAL L+ ++ V +TF ++ + LA L+ +QAH +++ G DI
Sbjct: 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF------PLDI 360
Query: 427 FVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLC 486
+L+D+Y K G +ED +F+ M ++ +SWNA+I G +G GT+A+ +F++M+
Sbjct: 361 VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 487 GEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDE 546
G P+HVT + VL AC ++GL E+G + F SMS+ H + P HY CM++LLGR G LDE
Sbjct: 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480
Query: 547 AKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAE 606
A +I P +P +W +LL AC++H+N+ LG A+KL + P YV+L N+Y
Sbjct: 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS 540
Query: 607 LGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTRE 666
GR E +V + ++++G+ P C+WIE+ + F D+ HP ++EIY L L +E
Sbjct: 541 SGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKE 600
Query: 667 MKRVGYVP 674
+ GYV
Sbjct: 601 ISEYGYVA 608
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 267 bits (684), Expect = 3e-78
Identities = 145/438 (33%), Positives = 228/438 (52%), Gaps = 39/438 (8%)
Query: 76 VFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEA 135
+ V N++++ +++G + A +F MPERD SWN +V G+A+ F EA
Sbjct: 112 ALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEA 171
Query: 136 LGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDM 195
L + +M Y+F L C G D G +VHA + + + DV + +ALI M
Sbjct: 172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231
Query: 196 YGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTL 255
Y KCG V AR VFD M R+ +SWN++I+ Y +NG + LE+F M ++PD +T+
Sbjct: 232 YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291
Query: 256 ASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMP 315
SV+SAC L + G ++H +++ D+ + N+L+ MY G EA VF RM
Sbjct: 292 TSVISACELLGDERLGREMHGYVVK-TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM- 349
Query: 316 IRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRL 375
ET ++ VSW A+I+GY +NG ++AL + L
Sbjct: 350 ------ET------------------------KDAVSWTAMISGYEKNGLPDKALETYAL 379
Query: 376 LKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDM 435
+++++V P T ++L+ACA L DL +G + H + GL S + V N+LI+M
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI------SYVVVANALIEM 433
Query: 436 YMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTM 495
Y KC ++ +F + E+D +SW ++I G N EAL F++MLL KP+ VT+
Sbjct: 434 YSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTL 492
Query: 496 IGVLCACSHAGLVEEGRK 513
I L AC+ G + G++
Sbjct: 493 IAALSACARIGALMCGKE 510
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 234 bits (599), Expect = 2e-67
Identities = 150/545 (27%), Positives = 240/545 (44%), Gaps = 118/545 (21%)
Query: 17 LDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKV 76
L +S + L+++C+ KS+ + V+ + S F + ++ NR++ ++ KCG L AR++
Sbjct: 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL 180
Query: 77 FDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEAL 136
FD+M +N+ +W +II GL+ G + EA
Sbjct: 181 FDEMPERNLASWGTIIGGLVDAG-------------------------------NYREAF 209
Query: 137 GYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMY 196
F +M + +F L A AG + G Q+H + K+ D ++ ALIDMY
Sbjct: 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMY 269
Query: 197 GKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLA 256
KCG + AR VFDGM E+ V+WNS++ Y +G + +AL ++ M SG+ D+ T +
Sbjct: 270 SKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS 329
Query: 257 SVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPI 316
++ + LA + Q HA L+R D+V ALVD+Y+K G++ +AR VFDRMP
Sbjct: 330 IMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388
Query: 317 RNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLL 376
+N++SWNALIAGY +G +A+ +F +
Sbjct: 389 -------------------------------KNLISWNALIAGYGNHGRGTKAVEMFERM 417
Query: 377 KRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMY 436
E V P H TF +L+AC
Sbjct: 418 IAEGVAPNHVTFLAVLSACR---------------------------------------- 437
Query: 437 MKCGSVEDGCRIFETMVERDWVSWNAMIVGC-----AQNGYGTEALGLFKKMLLCGEKPD 491
G E G IF++M E + AM C + G EA + ++ KP
Sbjct: 438 -YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF---KPT 493
Query: 492 HVTMIG-VLCACSHAGLVEEGRKYFSSMSKEHGLAPLK-DHYTCMVDLLGRAGCLDEAKT 549
V M +L AC +E GR + K +G+ P K ++Y +++L +G EA
Sbjct: 494 -VNMWAALLTACRIHKNLELGR---LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK 549
Query: 550 LIEAM 554
++E +
Sbjct: 550 VVETL 554
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 232 bits (592), Expect = 2e-65
Identities = 142/480 (29%), Positives = 228/480 (47%), Gaps = 53/480 (11%)
Query: 120 NSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSK 179
NS + H + +AL M + E ++ + C + G++V +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 180 SRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEV 239
S S V +G+A++ M+ + G + A VF M ER++ SWN L+ Y + G +AL +
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 240 FVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYA 299
+ RM+ +G+ PD T V+ C + G ++HA ++R D+ + NAL+ MY
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG-FELDVDVVNALITMYV 233
Query: 300 KCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAG 359
KCG + AR VFDRMP R+ +SWNA+I+G
Sbjct: 234 KCGDVVSARLVFDRMPR-------------------------------RDCISWNAMISG 262
Query: 360 YTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFL 419
Y +NGE E L LF ++ SV P T ++++AC L D +LGR+ H +VVK G
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF--- 319
Query: 420 SGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGL 479
D+ V NSLI MY+ GS + ++F M +D VSW AMI G +NG +AL
Sbjct: 320 ---AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376
Query: 480 FKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYT------C 533
+ M PD +T+ VL AC+ G ++ G K H LA K +
Sbjct: 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKL-------HELAERKGLISYVVVANA 429
Query: 534 MVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAA-CKVHRNIMLGEYVAKKLLEIEPS 592
++++ + C+D+A + +P + D + W S++A +R + + LL ++P+
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN 488
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 1e-40
Identities = 102/425 (24%), Positives = 191/425 (44%), Gaps = 60/425 (14%)
Query: 8 KQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKC 67
+++ D + + F +L + S +++H ++K+ + F+ LID+Y+KC
Sbjct: 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272
Query: 68 GCLYGARKVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFA 127
G I+DA +F MPE+ +WNSM++G+A
Sbjct: 273 -------------------------------GDIEDARCVFDGMPEKTTVAWNSMLAGYA 301
Query: 128 QHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVY 187
H EAL + +M ++ +++F + + + Q HA L ++ + D+
Sbjct: 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361
Query: 188 MGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASG 247
+AL+D+Y K GR+ AR VFD M +N++SWN+LI Y +G + A+E+F RM+A G
Sbjct: 362 ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421
Query: 248 IEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEA 307
+ P+ VT +V+SAC ++G +I + +++ + ++++ + G L+EA
Sbjct: 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
Query: 308 RCVFDRMPIRNVVSETSMVSGYAKASSVKS----ARLMFTKML---ERNVVSWNALIAGY 360
+ R P + V +M + A + RL K+ + ++ L+ Y
Sbjct: 482 YAMIRRAPFKPTV---NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY 538
Query: 361 TQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLS 420
+G EA + LKR+ + + AC +++ +Q H F S
Sbjct: 539 NSSGRQAEAAKVVETLKRKGLS--------MHPACTW---IEVKKQDH--------SFFS 579
Query: 421 GEESD 425
G+
Sbjct: 580 GDRLH 584
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 2e-17
Identities = 73/324 (22%), Positives = 129/324 (39%), Gaps = 57/324 (17%)
Query: 354 NALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVK 413
N+ + +G+ E+AL L ++ V + L C ++ G + + +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 414 HGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYG 473
+ +GN+++ M+++ G + +F M ERD SWN ++ G A+ GY
Sbjct: 115 SHPSL------GVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYF 168
Query: 474 TEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTC 533
EAL L+ +ML G +PD T VL C + GR+ + + + G D
Sbjct: 169 DEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR-FGFELDVDVVNA 227
Query: 534 MVDLLGRAGCLDEAKTLIEAMP----------------------------------MQPD 559
++ + + G + A+ + + MP + PD
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287
Query: 560 AVIWGSLLAACKVHRNIMLGE----YVAKKLLEIEPS--NSGPYVLLSNMYAELGRWGEV 613
+ S+++AC++ + LG YV K ++ S NS L MY LG WGE
Sbjct: 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS-----LIQMYLSLGSWGEA 342
Query: 614 VRVRKLMRKRGVVKQPGCSWIEIL 637
+V M + V SW ++
Sbjct: 343 EKVFSRMETKDAV-----SWTAMI 361
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 1e-10
Identities = 71/331 (21%), Positives = 140/331 (42%), Gaps = 32/331 (9%)
Query: 95 LLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGY---------FVKMHSE 145
LL+ G I D L M +R + + H +F +A F K+
Sbjct: 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKI-----YHAKFFKACKKQRAVKEAFRFAKL-IR 433
Query: 146 NFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCA 205
N LS ++ +S CA S D +V L+ ++ +D + + LI K G+V
Sbjct: 434 NPTLSTFNM--LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM 491
Query: 206 RRVFDGMR----ERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSA 261
VF M E N+ ++ +LI + G + A + M + ++PD V +++SA
Sbjct: 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551
Query: 262 CASLAAFKEGLQIHARLMRCEK--LRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNV 319
C A + A M+ E + D + AL+ A G+++ A+ V+ + N+
Sbjct: 552 CGQSGAVDRAFDVLAE-MKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610
Query: 320 VSE----TSMVSGYAKASSVKSARLMFTKMLERNV----VSWNALIAGYTQNGENEEALG 371
T V+ ++ A ++ M ++ V V ++AL+ G+ ++A
Sbjct: 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 372 LFRLLKRESVCPTHYTFGNLLNACANLADLQ 402
+ + +++ + ++ +L+ AC+N + +
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 3e-10
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 349 NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACAN 397
+VV++N LI GY + G+ EEAL LF +K+ + P YT+ L++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 4e-10
Identities = 77/335 (22%), Positives = 130/335 (38%), Gaps = 87/335 (25%)
Query: 249 EPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEAR 308
P T ++S CAS L++ RL++ L+ D L L+ AK GK++
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRV-LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492
Query: 309 CVFDRMPIR----NVVSETSMVSGYAKASSVKSARLMFTKMLERNV----VSWNALIAGY 360
VF M NV + +++ G A+A V A + M +NV V +NALI+
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
Query: 361 TQNGENEEALGLFRLLKRES--VCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRF 418
Q+G + A + +K E+ + P H T G L+ ACAN + ++ + + ++ ++
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK- 611
Query: 419 LSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALG 478
G+ E + + C+Q G AL
Sbjct: 612 ---------------------GTPE---------------VYTIAVNSCSQKGDWDFALS 635
Query: 479 LFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLL 538
++ M G KPD V +FS+ +VD+
Sbjct: 636 IYDDMKKKGVKPDEV--------------------FFSA----------------LVDVA 659
Query: 539 GRAGCLDEAKTLIEAMP---MQPDAVIWGSLLAAC 570
G AG LD+A +++ ++ V + SL+ AC
Sbjct: 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 3e-09
Identities = 62/258 (24%), Positives = 101/258 (39%), Gaps = 60/258 (23%)
Query: 383 PTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFL--SGEESDIFVGNSLIDMYMKCG 440
PT TF L++ CA+ D+ + LR + +G ++D + +LI K G
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRV--------LRLVQEAGLKADCKLYTTLISTCAKSG 486
Query: 441 SVEDGCRIFETM----VERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMI 496
V+ +F M VE + ++ A+I GCA+ G +A G + M KPD V
Sbjct: 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546
Query: 497 GVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPM 556
++ AC +G V+ + M E P+
Sbjct: 547 ALISACGQSGAVDRAFDVLAEMKA-------------------------------ETHPI 575
Query: 557 QPDAVIWGSLLAAC----KVHRNI----MLGEYVAKKLLEIEPSNSGPYVLLSNMYAELG 608
PD + G+L+ AC +V R M+ EY K E+ Y + N ++ G
Sbjct: 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV-------YTIAVNSCSQKG 628
Query: 609 RWGEVVRVRKLMRKRGVV 626
W + + M+K+GV
Sbjct: 629 DWDFALSIYDDMKKKGVK 646
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 3e-09
Identities = 76/383 (19%), Positives = 158/383 (41%), Gaps = 50/383 (13%)
Query: 20 SPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDK 79
S F L+ C S+ + RV + ++ ++ + LI AK G + +VF +
Sbjct: 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHE 497
Query: 80 MSNK----NVFTWNSIITGLLKWGFIDDASRLFASMPER----DQCSWNSMVSGFAQHDR 131
M N NV T+ ++I G + G + A + M + D+ +N+++S Q
Sbjct: 498 MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA 557
Query: 132 FSEALGYFVKMHSENFAL--SEYSFGSALSAC--AGSVDFKMGTQVHALLSKS--RYSSD 185
A +M +E + + G+ + AC AG VD +V+ ++ + + + +
Sbjct: 558 VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD--RAKEVYQMIHEYNIKGTPE 615
Query: 186 VYMGSALIDMYGKCGRVSCARRVFDGMRERNI----VSWNSLITCYEQNGPASDALEVFV 241
VY + ++ + G A ++D M+++ + V +++L+ G A E+
Sbjct: 616 VY--TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673
Query: 242 RMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKC 301
GI+ V+ +S++ AC++ +K+ L+++ + + KLR + NAL+ +
Sbjct: 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTVSTMNALITALCEG 732
Query: 302 GKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYT 361
+L +A V M K L N ++++ L+
Sbjct: 733 NQLPKALEVLSEM---------------------KRLGLC------PNTITYSILLVASE 765
Query: 362 QNGENEEALGLFRLLKRESVCPT 384
+ + + L L K + + P
Sbjct: 766 RKDDADVGLDLLSQAKEDGIKPN 788
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 4e-08
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 216 NIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACA 263
++V++N+LI Y + G +AL++F M GI+P+ T + ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 7e-07
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 83 KNVFTWNSIITGLLKWGFIDDASRLFASMPER----DQCSWNSMVSGFAQ 128
+V T+N++I G K G +++A +LF M +R + +++ ++ G +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-06
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 458 VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVT---MIGVLC 500
V++N +I G + G EAL LF +M G KP+ T +I LC
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 292 NALVDMYAKCGKLNEARCVFDRMPIR----NVVSETSMVSGYAK 331
N L+D Y K GK+ EA +F+ M R NV + + ++ G K
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 458 VSWNAMIVGCAQNGYGTEALGLFKKMLLCG 487
V++N++I G + G EAL LFK+M G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 218 VSWNSLITCYEQNGPASDALEVFVRMMASGIEPDE 252
V++N+LI + G +ALE+F M GIEPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 351 VSWNALIAGYTQNGENEEALGLFRLLKRESV 381
V++N+LI+GY + G+ EEAL LF+ +K + V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 458 VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD 491
V++N +I G + G EAL LFK+M G +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 58 NRLIDVYAKCGCLYGARKVFDKMSNK----NVFTWNSIITGLLK 97
N LID Y K G + A K+F++M + NV+T++ +I GL K
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 5e-04
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 344 KMLERNVVSWNALIAGYTQNGENEEALGLFR 374
K L+ +VV++N LI G + G +EA+ L
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLD 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 7e-04
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 218 VSWNSLITCYEQNGPASDALEVFVRMMASGI 248
V++NSLI+ Y + G +ALE+F M G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 8e-04
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 425 DIFVGNSLIDMYMKCGSVEDGCRIFETMVER----DWVSWNAMIVGCAQ 469
D+ N+LID Y K G VE+ ++F M +R + +++ +I G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 191 ALIDMYGKCGRVSCARRVFDGMRER----NIVSWNSLITCY 227
LID Y K G+V A ++F+ M++R N+ +++ LI
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 318 NVVSETSMVSGYAKASSVKSARLMFTKMLER----NVVSWNALIAGY 360
+VV+ +++ GY K V+ A +F +M +R NV +++ LI G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 9/48 (18%), Positives = 22/48 (45%)
Query: 115 DQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACA 162
D ++N+++ G+ + + EAL F +M + Y++ +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 118 SWNSMVSGFAQHDRFSEALGYFVKMHSENF 147
++NS++SG+ + + EAL F +M +
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 217 IVSWNSLITCYEQNGPASDALEVFVRMMASGIEP 250
+ ++N+L+ + G AL V M ASG++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 705 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.85 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.75 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.71 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.69 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.69 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.69 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.65 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.6 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.57 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.57 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.53 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.51 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.51 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.5 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.49 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.49 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.48 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.47 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.47 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.44 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.41 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.4 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.4 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.4 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.38 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.32 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.31 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.29 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.29 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.28 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.28 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.28 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.23 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.21 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.2 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.19 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.17 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.17 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.16 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.16 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.15 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.13 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.13 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.13 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.11 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.1 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.09 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.08 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.07 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.04 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.03 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.99 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.99 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.99 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.99 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.9 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.85 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.81 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.81 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.8 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.79 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.74 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.73 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.72 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.71 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.71 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.7 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.66 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.65 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.65 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.64 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.57 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.55 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.53 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.53 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.52 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.48 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.47 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.45 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.45 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.44 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.42 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.41 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.39 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.38 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.36 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.35 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.3 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.3 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.26 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.21 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.21 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.19 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.18 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.17 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.12 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.11 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.1 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.06 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.05 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.04 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.03 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.0 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.98 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.97 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.96 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.93 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.93 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.92 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.92 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.91 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.91 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.9 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.87 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.85 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.82 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.8 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.73 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.73 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.73 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.72 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.72 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.71 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.71 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.69 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.66 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.61 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.61 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.59 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.58 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.57 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.57 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.52 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.49 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.44 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.44 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.42 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.42 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.4 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.39 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.39 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.37 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.33 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.3 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.28 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.26 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.24 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.21 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.2 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.19 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.19 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.17 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.14 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.13 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.13 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.1 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.1 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.09 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.08 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.06 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.06 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.02 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.96 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.96 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.96 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.94 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.94 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.92 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.88 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.87 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.82 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.8 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.77 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.77 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.75 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.74 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 96.73 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.7 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.62 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.47 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.45 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.41 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.41 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.35 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.31 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.26 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.24 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.17 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.14 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.13 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.05 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.01 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.93 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.88 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.86 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.72 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.64 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.62 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.62 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.6 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.46 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.37 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.34 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.28 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.23 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.08 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.06 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.96 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.95 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.91 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.7 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.7 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.67 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.66 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.61 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.61 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.53 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.48 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.48 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.48 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.22 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.07 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.03 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.92 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.86 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.7 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.68 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.59 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.51 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.4 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.37 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.28 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.96 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.93 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.68 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 92.61 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.45 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.44 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.31 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.3 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.83 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.48 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.37 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 91.19 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.97 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.95 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.7 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.63 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.57 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.39 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.38 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.32 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.17 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.15 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.7 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.53 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.25 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.18 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.15 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.79 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.75 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.61 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.61 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.2 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.84 | |
| KOG1498 | 439 | consensus 26S proteasome regulatory complex, subun | 87.72 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.66 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.48 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.08 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.06 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 86.97 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.77 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 86.34 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 86.3 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.29 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.15 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 85.95 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.83 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 85.79 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.76 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.62 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.39 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 85.21 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.85 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 84.69 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.12 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 83.71 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 83.66 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.57 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.37 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 83.32 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.08 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.74 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.69 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 82.29 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 82.14 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 81.71 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.44 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 81.14 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 81.13 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 80.44 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 80.2 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 80.01 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-100 Score=860.27 Aligned_cols=671 Identities=35% Similarity=0.628 Sum_probs=639.2
Q ss_pred CCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC----CChhhHHH
Q 005265 15 AFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN----KNVFTWNS 90 (705)
Q Consensus 15 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ 90 (705)
-.|+..+++.++.++++.|++++|..+++.|.+.|++|+..+|..++.+|.+.+.++.|..++..+.+ +++..+|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 35778889999999999999999999999999999999999999999999999999999999987654 78889999
Q ss_pred HHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHH
Q 005265 91 IITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMG 170 (705)
Q Consensus 91 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 170 (705)
||.+|++.|+++.|.++|++|++||+.+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 005265 171 TQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEP 250 (705)
Q Consensus 171 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 250 (705)
.+++..+.+.|+.||..++|+||.+|+++|+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|...|+.|
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHH
Q 005265 251 DEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYA 330 (705)
Q Consensus 251 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 330 (705)
|..||+.++.+|++.|+++.|.+++..+.+.| +.||..+|++|+.+|+++|++++|.++|++|..+|..+|+++|.+|+
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999998 99999999999999999999999999999999888888887777766
Q ss_pred hcCC----------------------------------------------------------------------HHHHHH
Q 005265 331 KASS----------------------------------------------------------------------VKSARL 340 (705)
Q Consensus 331 ~~~~----------------------------------------------------------------------~~~A~~ 340 (705)
+.|+ +++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 5554 445555
Q ss_pred HHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCC
Q 005265 341 MFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLS 420 (705)
Q Consensus 341 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 420 (705)
+|++|.++|.++||.+|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~---- 520 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI---- 520 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC----
Confidence 56666667788888888888888888888999999875 5899999999999999999999999999999999999
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 005265 421 GEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLC 500 (705)
Q Consensus 421 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 500 (705)
.++..++++|+++|+++|++++|.++|+.+ .+|..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.
T Consensus 521 --~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 521 --GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred --CccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 899999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGE 580 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 580 (705)
+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.|+
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 99999999999999999987889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEeEEeeCCcCCCChhHHHHHH
Q 005265 581 YVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVL 660 (705)
Q Consensus 581 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 660 (705)
.+.+++++++|++...|..|+++|+..|+|++|.++++.|+++|++|+||+||+++++.+|.|.++|..||+.++|+..|
T Consensus 678 ~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l 757 (857)
T PLN03077 678 LAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVL 757 (857)
T ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcccCCC-cccccccccccc-cccchh
Q 005265 661 KMLTREMKRVGYVPNAS-DDEAYEEQNGSN-STSDCQ 695 (705)
Q Consensus 661 ~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~-~~~~~~ 695 (705)
+.+..+|++.||+|++. ++ +++|++|++ +..|||
T Consensus 758 ~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse 793 (857)
T PLN03077 758 EGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSE 793 (857)
T ss_pred HHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccH
Confidence 99999999999999999 66 557777777 555665
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-85 Score=718.66 Aligned_cols=545 Identities=33% Similarity=0.629 Sum_probs=529.1
Q ss_pred CCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCC-CCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHH
Q 005265 113 ERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSEN-FALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSA 191 (705)
Q Consensus 113 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 191 (705)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3477799999999999999999999999998864 789999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHH
Q 005265 192 LIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEG 271 (705)
Q Consensus 192 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 271 (705)
|+.+|+++|+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCee
Q 005265 272 LQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVV 351 (705)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 351 (705)
.+++..+.+.| +.+|..++++|+++|+++|++++|. ++|++|.++|++
T Consensus 244 ~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~-------------------------------~vf~~m~~~~~v 291 (697)
T PLN03081 244 QQLHCCVLKTG-VVGDTFVSCALIDMYSKCGDIEDAR-------------------------------CVFDGMPEKTTV 291 (697)
T ss_pred HHHHHHHHHhC-CCccceeHHHHHHHHHHCCCHHHHH-------------------------------HHHHhCCCCChh
Confidence 99999999998 9999999999999999999999999 666666778889
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHH
Q 005265 352 SWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNS 431 (705)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (705)
+||.+|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.+++..+.+.|+ +||..++++
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~------~~d~~~~~~ 365 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF------PLDIVANTA 365 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC------CCCeeehHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHH
Q 005265 432 LIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEG 511 (705)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 511 (705)
|+++|+++|++++|.++|++|.++|..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 005265 512 RKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEP 591 (705)
Q Consensus 512 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 591 (705)
.++|+.|.+.+|+.|+..+|++++++|++.|++++|.+++++|+..|+..+|++|+.+|..+|+++.|..++++++++.|
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 99999998888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHHHHcC
Q 005265 592 SNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVG 671 (705)
Q Consensus 592 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g 671 (705)
++...|..|+++|++.|+|++|.++++.|+++|+++.||++|+++++.+|.|.++|..||+..+++..+..+..+|++.|
T Consensus 526 ~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 605 (697)
T PLN03081 526 EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYG 605 (697)
T ss_pred CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC-ccccccccccccc-ccchh
Q 005265 672 YVPNAS-DDEAYEEQNGSNS-TSDCQ 695 (705)
Q Consensus 672 ~~~~~~-~~~~~~~~~~~~~-~~~~~ 695 (705)
|.|++. +++++++++|++. ..|||
T Consensus 606 y~~~~~~~~~~~~~~~~~~~~~~hse 631 (697)
T PLN03081 606 YVAEENELLPDVDEDEEKVSGRYHSE 631 (697)
T ss_pred CCCCcchhhccccHHHHHHHHHhccH
Confidence 999999 9999999888885 55655
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-75 Score=658.84 Aligned_cols=558 Identities=24% Similarity=0.353 Sum_probs=535.0
Q ss_pred CCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC----CChhhHHHH
Q 005265 16 FLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN----KNVFTWNSI 91 (705)
Q Consensus 16 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l 91 (705)
.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++++|++.+++..+.+++..+.+ ||+.+||+|
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 5899999999999999999999999999999999999999999999999999999999999988864 899999999
Q ss_pred HHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHH
Q 005265 92 ITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGT 171 (705)
Q Consensus 92 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 171 (705)
|.+|++.|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 005265 172 QVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPD 251 (705)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 251 (705)
+++..+.+.|+.||..+||+|+.+|+++|++++|.++|++|.+||+++||++|.+|++.|++++|+++|++|.+.|+.||
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHh
Q 005265 252 EVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAK 331 (705)
Q Consensus 252 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 331 (705)
..||+.++.+|++.|+++.|.+++..+.+.| +.|+..++++|+++|+++|++++|.++|++|.++|+.+|+++|.+|++
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKG-LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 9999999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhcC---CCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHH
Q 005265 332 ASSVKSARLMFTKML---ERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAH 408 (705)
Q Consensus 332 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 408 (705)
.|+.++|..+|++|. .||..+|+.++.+|++.|..+.+.+++..|.+.|+.||..+++.++.+|++.|+++.|..+|
T Consensus 468 ~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 468 NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 999999999999994 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005265 409 THVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV----ERDWVSWNAMIVGCAQNGYGTEALGLFKKML 484 (705)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 484 (705)
..+ .+|..+||++|.+|++.|+.++|.++|++|. .||..||+.++.+|++.|++++|.++|+.|.
T Consensus 548 ~~~-----------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 548 NSH-----------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred Hhc-----------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 876 3799999999999999999999999999996 5899999999999999999999999999999
Q ss_pred -HCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HH
Q 005265 485 -LCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AV 561 (705)
Q Consensus 485 -~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~ 561 (705)
+.|+.|+..+|+.++.++++.|++++|.+++++| .+.|+..+|++|+.+|...|+.+.+....+++ .+.|+ ..
T Consensus 617 ~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~ 692 (857)
T PLN03077 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM----PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVG 692 (857)
T ss_pred HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Confidence 6799999999999999999999999999999988 57899999999999999999999988887766 56665 55
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
.|..+.+.|...|++++|.++.+.|.+.
T Consensus 693 ~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 693 YYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 6666677899999999999999999875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=582.49 Aligned_cols=523 Identities=18% Similarity=0.261 Sum_probs=482.6
Q ss_pred CCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCC-CCchhhHHHHHHHHHccCChhhHHHHHhccCCCChhhHHHHHH
Q 005265 15 AFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQF-ASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIIT 93 (705)
Q Consensus 15 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 93 (705)
..++...|..++..|++.|++++|+++|+.|.+.|+ .++..+++.++.+|.+.|.+++|.++|+.|..||..+|+.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 346788899999999999999999999999999994 6788888999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHhcCC----CCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHH
Q 005265 94 GLLKWGFIDDASRLFASMP----ERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKM 169 (705)
Q Consensus 94 ~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 169 (705)
+|++.|+++.|.++|+.|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+++.
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 9999999999999999997 479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccC------CCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 005265 170 GTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMR------ERNIVSWNSLITCYEQNGPASDALEVFVRM 243 (705)
Q Consensus 170 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 243 (705)
|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999995 489999999999999999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC----CCCc
Q 005265 244 MASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMP----IRNV 319 (705)
Q Consensus 244 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~ 319 (705)
.+.|+.|+..+|+.++.+|++.|++++|..+|++|.+.| +.||..+|+.++++|++.|++++|.++|++|. .++.
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 999999999999999999999999999999999999998 99999999999999999999999999999997 4688
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhc----CCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHH
Q 005265 320 VSETSMVSGYAKASSVKSARLMFTKM----LERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNAC 395 (705)
Q Consensus 320 ~~~~~li~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 395 (705)
.+|+++|.+|++.|++++|.++|++| ..||..+||.||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999 46899999999999999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH------ccCCCChhHHHHHHHHHHH
Q 005265 396 ANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFE------TMVERDWVSWNAMIVGCAQ 469 (705)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~~~~~~~~~~~~li~~~~~ 469 (705)
++.|+++.|.++|..|.+.|+ .||..+|++++.+|.+ ++++|..+.+ .+...+...|
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi------~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~~~~n~w--------- 827 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGI------KPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIENKW--------- 827 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhccccccccch---------
Confidence 999999999999999999999 9999999999977542 3455544433 2222233333
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 005265 470 NGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKT 549 (705)
Q Consensus 470 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 549 (705)
.+.|+.+|++|++.|+.||..||+.++.+++..+..+.+..+++.|... +..|+..+|++|++++++. .++|..
T Consensus 828 ---~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~ 901 (1060)
T PLN03218 828 ---TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFS 901 (1060)
T ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHH
Confidence 3569999999999999999999999998888899999999999888544 7788899999999998432 468999
Q ss_pred HHHhC---CCCCCHH
Q 005265 550 LIEAM---PMQPDAV 561 (705)
Q Consensus 550 ~~~~~---~~~p~~~ 561 (705)
++++| ++.|+..
T Consensus 902 l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 902 LLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHcCCCCCcc
Confidence 99998 5667654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-66 Score=571.48 Aligned_cols=508 Identities=19% Similarity=0.268 Sum_probs=341.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHhcCCCCCcc-----cHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHH
Q 005265 83 KNVFTWNSIITGLLKWGFIDDASRLFASMPERDQC-----SWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSA 157 (705)
Q Consensus 83 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 157 (705)
++...|..++..+++.|++++|.++|+.|++++.. +++.++.+|.+.|.+++|+.+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 34445555555555555555555555555544332 233444555556666666666655542 566666666
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccC----CCCcchHHHHHHHHHhcCCh
Q 005265 158 LSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMR----ERNIVSWNSLITCYEQNGPA 233 (705)
Q Consensus 158 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~ 233 (705)
|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 66666666666666666666666666666666666666666666666666666665 35666666666666666666
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 005265 234 SDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRC-EKLRNDLVLGNALVDMYAKCGKLNEARCVFD 312 (705)
Q Consensus 234 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 312 (705)
++|+++|++|...|+.||..||+.++.+|++.|++++|.++|..|.+. .++.||..+|++++.+|+++|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666666666677667777777776666777777766666542 1266666677777777777666666665554
Q ss_pred hCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHH
Q 005265 313 RMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLL 392 (705)
Q Consensus 313 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 392 (705)
.|.+.+ ..|+..+||.+|.+|++.|++++|+.+|++|.+.|+.||..||+.++
T Consensus 604 ~M~e~g---------------------------i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI 656 (1060)
T PLN03218 604 MIHEYN---------------------------IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV 656 (1060)
T ss_pred HHHHcC---------------------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 433222 24555666666666666777777777777777777777777777777
Q ss_pred HHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC----CCChhHHHHHHHHHH
Q 005265 393 NACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV----ERDWVSWNAMIVGCA 468 (705)
Q Consensus 393 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~ 468 (705)
.+|++.|+++.|.+++..|.+.|+ .|+..+|++|+.+|+++|++++|.++|++|. .||..+||+||.+|+
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G~------~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~ 730 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQGI------KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 777777777777777777777666 6677777777777777777777777777663 466777777777777
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH----hc---
Q 005265 469 QNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLG----RA--- 541 (705)
Q Consensus 469 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~--- 541 (705)
+.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.||..+|++++.+|. ++
T Consensus 731 k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l 809 (1060)
T PLN03218 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACAL 809 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 77777777777777777777777777777777777777777777777777544 67777777777665432 11
Q ss_pred ----------------CChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCCchHHHHH
Q 005265 542 ----------------GCLDEAKTLIEAM---PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEI-EPSNSGPYVLLS 601 (705)
Q Consensus 542 ----------------g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~ 601 (705)
+..++|..+|++| ++.||..||+.++.++...+..+.+..+++.+... .+.+..+|..|+
T Consensus 810 ~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li 889 (1060)
T PLN03218 810 GEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLV 889 (1060)
T ss_pred hhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHH
Confidence 2346799999999 78999999999998887888888888888776533 556677899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCccCCc
Q 005265 602 NMYAELGRWGEVVRVRKLMRKRGVVKQPG 630 (705)
Q Consensus 602 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 630 (705)
+.+.+. .++|..++++|...|+.|+..
T Consensus 890 ~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 890 DGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 987432 368999999999999988764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-66 Score=570.46 Aligned_cols=472 Identities=25% Similarity=0.439 Sum_probs=450.2
Q ss_pred CCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcC-CCCchhhHHHHHHHHHccCChhhHHHHHhccCC----CChhhHH
Q 005265 15 AFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQ-FASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN----KNVFTWN 89 (705)
Q Consensus 15 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 89 (705)
..++..+++.+|..+.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.. ||+.+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34566789999999999999999999999998865 789999999999999999999999999999864 8999999
Q ss_pred HHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHH
Q 005265 90 SIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKM 169 (705)
Q Consensus 90 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 169 (705)
.|+.+|++.|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 005265 170 GTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIE 249 (705)
Q Consensus 170 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 249 (705)
+.+++..+.+.|+.||..+||+|+++|+++|++++|.++|++|.++|+++||++|.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHH
Q 005265 250 PDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGY 329 (705)
Q Consensus 250 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 329 (705)
||..||++++.+|++.|+++.|.+++..+.+.| ++||..++++|+++|+++|++++|.
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-~~~d~~~~~~Li~~y~k~G~~~~A~--------------------- 380 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-FPLDIVANTALVDLYSKWGRMEDAR--------------------- 380 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC-CCCCeeehHHHHHHHHHCCCHHHHH---------------------
Confidence 999999999999999999999999999999998 9999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHH
Q 005265 330 AKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHT 409 (705)
Q Consensus 330 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 409 (705)
++|++|.++|..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+
T Consensus 381 ----------~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~ 450 (697)
T PLN03081 381 ----------NVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450 (697)
T ss_pred ----------HHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 6666677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-hCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 005265 410 HVVK-HGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV-ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCG 487 (705)
Q Consensus 410 ~~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 487 (705)
.|.+ .|+ .|+..+|++++++|++.|++++|.+++++|. .|+..+|++|+.+|..+|+.+.|..+++++.+
T Consensus 451 ~m~~~~g~------~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~-- 522 (697)
T PLN03081 451 SMSENHRI------KPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG-- 522 (697)
T ss_pred HHHHhcCC------CCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--
Confidence 9986 588 8999999999999999999999999999997 68999999999999999999999999999976
Q ss_pred CCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 005265 488 EKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL 527 (705)
Q Consensus 488 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 527 (705)
+.|+ ..+|..++..|++.|++++|.++++.|.+. |+...
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k~ 562 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSMH 562 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCccC
Confidence 6676 469999999999999999999999999655 77543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=335.06 Aligned_cols=580 Identities=14% Similarity=0.076 Sum_probs=377.7
Q ss_pred HHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC---CChhhHHHHHHHHHhcCChhH
Q 005265 27 DSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN---KNVFTWNSIITGLLKWGFIDD 103 (705)
Q Consensus 27 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 103 (705)
..+...|+++.|...++.+.+.+. .+...+..+...+...|++++|...|++..+ .+...+..+...+.+.|++++
T Consensus 269 ~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 347 (899)
T TIGR02917 269 LVDFQKKNYEDARETLQDALKSAP-EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDE 347 (899)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHH
Confidence 334456777777777777776552 2233344455566677777777777777653 234556666677777777777
Q ss_pred HHHHHhcCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHc
Q 005265 104 ASRLFASMPE---RDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKS 180 (705)
Q Consensus 104 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 180 (705)
|...++.+.+ .+...|..+...+.+.|++++|..+|+++.+..+ .+...+..+...+...|+++.|...++.+.+.
T Consensus 348 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 426 (899)
T TIGR02917 348 AIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQL 426 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh
Confidence 7777776653 2445667777777777777777777777766532 24455666666667777777777777777665
Q ss_pred CCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 005265 181 RYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE---RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLAS 257 (705)
Q Consensus 181 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 257 (705)
... .......++..|.+.|++++|.++++.+.. ++..+|..+...+...|++++|.+.|+++.+.. +.+...+..
T Consensus 427 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 504 (899)
T TIGR02917 427 DPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAAN 504 (899)
T ss_pred CCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHH
Confidence 432 233445566667777777777777776653 345567777777777777777777777776532 223345555
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhcCC
Q 005265 258 VVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPI---RNVVSETSMVSGYAKASS 334 (705)
Q Consensus 258 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 334 (705)
+...+...|++++|...++.+++.. +.+..++..+...+.+.|+.++|...|+++.. .+...+..++..|.+.|+
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCC
Confidence 6666667777777777777776653 44566667777777777777777777766642 234455666677777777
Q ss_pred HHHHHHHHHhcCC---CCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHH
Q 005265 335 VKSARLMFTKMLE---RNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHV 411 (705)
Q Consensus 335 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 411 (705)
+++|..+++.+.. .+...|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+++.|...+..+
T Consensus 583 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777776643 344566777777777777777777777766543 234455666666677777777777777776
Q ss_pred HHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 005265 412 VKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGE 488 (705)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 488 (705)
.+.. +.+...+..++..+...|++++|..+++.+.+ .+...+..+...+...|++++|.+.|+++.. .
T Consensus 662 ~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~ 732 (899)
T TIGR02917 662 LELK-------PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK--R 732 (899)
T ss_pred HhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--h
Confidence 6654 34566667777777777777777777776653 2455666666667777777777777777766 3
Q ss_pred CCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHH
Q 005265 489 KPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PM-QPDAVIWGSL 566 (705)
Q Consensus 489 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l 566 (705)
.|+..++..+..++...|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.|+++ .. +++..+++.+
T Consensus 733 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 810 (899)
T TIGR02917 733 APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNL 810 (899)
T ss_pred CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 455556666666677777777777777766543 2334666666677777777777777777666 22 2355566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 567 LAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
...+...|+ .+|...++++++..|+++..+..++.++...|++++|.++++++.+.+.
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 666666666 6677777777776676666666677777777777777777777666543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=330.41 Aligned_cols=588 Identities=12% Similarity=0.031 Sum_probs=442.7
Q ss_pred CCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC--CC-hhhHHHHHH
Q 005265 17 LDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN--KN-VFTWNSIIT 93 (705)
Q Consensus 17 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~ 93 (705)
.+..++..+...+...|++++|...++.+.+... .+...+......+...|++++|...|+++.+ |+ ...+..+..
T Consensus 225 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 303 (899)
T TIGR02917 225 NNPAVLLALATILIEAGEFEEAEKHADALLKKAP-NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGA 303 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 4556677777777888888888888888877653 3334444455556677888888888887765 22 233444556
Q ss_pred HHHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHH
Q 005265 94 GLLKWGFIDDASRLFASMPE---RDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMG 170 (705)
Q Consensus 94 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 170 (705)
.+...|++++|...|+...+ .+...+..+...+.+.|++++|+..++.+.... +.+...+..+...+...|+++.|
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 67778888888888877653 245567777788888888888888888887654 33566777788888888888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 005265 171 TQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE---RNIVSWNSLITCYEQNGPASDALEVFVRMMASG 247 (705)
Q Consensus 171 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 247 (705)
..+++.+.+... .+...+..+...+...|++++|.+.|+.+.+ .+...+..++..+.+.|++++|.++++++...
T Consensus 383 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 460 (899)
T TIGR02917 383 AEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK- 460 (899)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Confidence 888888877642 2556677777788888888888888877654 23345666777888888888888888888764
Q ss_pred CCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHH
Q 005265 248 IEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPI---RNVVSETS 324 (705)
Q Consensus 248 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 324 (705)
.+++..++..+...+...|++++|...+.++++.. +.+...+..+...+...|++++|.+.|+++.. .+..++..
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 538 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILA 538 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 34556677788888888888888888888887753 45566777788888888888888888887753 35566777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccH
Q 005265 325 MVSGYAKASSVKSARLMFTKMLE---RNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADL 401 (705)
Q Consensus 325 li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 401 (705)
+...+.+.|+.++|...++++.. .+...+..++..|...|++++|+.+++.+.+.. +.+..++..+..++...|++
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 78888888888888888887743 344567777888888888888888888887643 44566788888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHH
Q 005265 402 QLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALG 478 (705)
Q Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 478 (705)
+.|...+..+.+.. +.+...+..+..+|.+.|++++|..+|+++.+ .+..+|..++..+...|++++|.+
T Consensus 618 ~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 618 NKAVSSFKKLLALQ-------PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888887765 35667777888888888888888888887653 356788888888888888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CC
Q 005265 479 LFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM--PM 556 (705)
Q Consensus 479 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~ 556 (705)
+++.+.+.+ .++...+..+...+...|++++|.+.|+.+... .|+..++..++.++.+.|++++|.+.++++ ..
T Consensus 691 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 691 IAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH 766 (899)
T ss_pred HHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 888888753 334456777777888888888888888877643 466677777888888888888888888777 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 557 QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 557 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+.+...+..+...|...|++++|...|+++++..|+++.++..+++++...|+ .+|+..++++.+.
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 34566777777778888888888888888888888888888888888888888 7788888887764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-25 Score=256.30 Aligned_cols=583 Identities=11% Similarity=0.020 Sum_probs=405.6
Q ss_pred CchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhh----------------HHHHHHHHHccCChhhHHHHHhccC
Q 005265 18 DSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFI----------------QNRLIDVYAKCGCLYGARKVFDKMS 81 (705)
Q Consensus 18 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~ll~~~~~~g~~~~A~~~~~~~~ 81 (705)
|+..+..+...+.+.|+.++|.+.++++.+... .+... ...+.+.+...|++++|.+.|++..
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P-~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l 139 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAP-DSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLF 139 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHc
Confidence 345555566666677777777777777766542 22211 1223345666677777777777665
Q ss_pred CC--ChhhH--HHHHHHHHhcCChhHHHHHHhcCCC--C-CcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCC-----
Q 005265 82 NK--NVFTW--NSIITGLLKWGFIDDASRLFASMPE--R-DQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFAL----- 149 (705)
Q Consensus 82 ~~--~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----- 149 (705)
+. +.... ..+.......|+.++|++.++++.+ | +...+..+...+...|+.++|+..++++.......
T Consensus 140 ~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~ 219 (1157)
T PRK11447 140 NGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQ 219 (1157)
T ss_pred cCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHH
Confidence 42 11111 0111111234667777777766653 2 33456666666666777777777777665432100
Q ss_pred -----------Ch---hhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC-
Q 005265 150 -----------SE---YSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE- 214 (705)
Q Consensus 150 -----------~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 214 (705)
+. ..+...+..+........+...+.........|+.. .......+...|++++|...|++..+
T Consensus 220 ~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~ 298 (1157)
T PRK11447 220 LWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRA 298 (1157)
T ss_pred HHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 00 011111111222222333444444433332222221 12334567788999999999998764
Q ss_pred -C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhHH------------HHHHHHHHccCChHHHHHHHHHHH
Q 005265 215 -R-NIVSWNSLITCYEQNGPASDALEVFVRMMASGIEP-DEVTL------------ASVVSACASLAAFKEGLQIHARLM 279 (705)
Q Consensus 215 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~------------~~ll~~~~~~~~~~~a~~~~~~~~ 279 (705)
| +...+..+...+.+.|++++|+..|++..+..... +...+ ......+.+.|++++|...+++++
T Consensus 299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3 66789999999999999999999999998754222 11111 122345678899999999999999
Q ss_pred HcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcccHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------
Q 005265 280 RCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIR---NVVSETSMVSGYAKASSVKSARLMFTKMLERN------- 349 (705)
Q Consensus 280 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~------- 349 (705)
+.. +.+...+..+...|...|++++|++.|++.... +...+..+...|. .++.++|...++.+....
T Consensus 379 ~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~ 455 (1157)
T PRK11447 379 QVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDI 455 (1157)
T ss_pred HhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHH
Confidence 974 556777888999999999999999999988742 4445556666664 567899999988775421
Q ss_pred -----eehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCc-chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCC
Q 005265 350 -----VVSWNALIAGYTQNGENEEALGLFRLLKRESVCP-THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEE 423 (705)
Q Consensus 350 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (705)
...+..+...+...|++++|+..|++.++.. | +...+..+...+.+.|++++|...++.+.+.. +
T Consensus 456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-------P 526 (1157)
T PRK11447 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-------P 526 (1157)
T ss_pred HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------C
Confidence 2235566778889999999999999998754 5 44566778888999999999999999998765 3
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC----Ch---------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 005265 424 SDIFVGNSLIDMYMKCGSVEDGCRIFETMVER----DW---------VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP 490 (705)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 490 (705)
.+...+..+...+...|+.++|...++.+... +. ..+..+...+...|+.++|..+++. .++
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~ 601 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPP 601 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCC
Confidence 45566666666778899999999999988642 11 1223456778899999999999872 234
Q ss_pred ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005265 491 DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLL 567 (705)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 567 (705)
+...+..+...+...|++++|+..|+.+.+. .|+ ...+..++.+|...|++++|++.++.. ...| +...+..+.
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la 678 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVA 678 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 4456778888999999999999999998754 455 888999999999999999999999987 3445 455677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCc------hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 568 AACKVHRNIMLGEYVAKKLLEIEPSNSG------PYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 568 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.++...|++++|.++++++++..|+++. .+..++.++...|++++|...+++...
T Consensus 679 ~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 679 LAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8889999999999999999998765543 566779999999999999999999863
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-24 Score=252.94 Aligned_cols=585 Identities=11% Similarity=0.057 Sum_probs=437.0
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC--CChhh-H----------
Q 005265 22 FAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN--KNVFT-W---------- 88 (705)
Q Consensus 22 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~-~---------- 88 (705)
.-...+.+...++.+.|.+.+.++.... +.++.++..++..+.+.|+.++|.+.+++..+ |+... +
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 4455677778899999999999998775 45788888899999999999999999999876 43221 1
Q ss_pred ------HHHHHHHHhcCChhHHHHHHhcCCCCCcccHH----HHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 005265 89 ------NSIITGLLKWGFIDDASRLFASMPERDQCSWN----SMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSAL 158 (705)
Q Consensus 89 ------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 158 (705)
..+...+.+.|++++|.+.|+...+.++.... .........|+.++|+..++++.+..+. +...+..+.
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA 188 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLA 188 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 23344688899999999999998754332221 1111223468999999999999987432 566777888
Q ss_pred HHhhCCCCcHHHHHHHHHHHHcCCCC----------------C---hhhHHHHHHHhhcCCChHHHHHHHhccCC--CCc
Q 005265 159 SACAGSVDFKMGTQVHALLSKSRYSS----------------D---VYMGSALIDMYGKCGRVSCARRVFDGMRE--RNI 217 (705)
Q Consensus 159 ~~~~~~~~~~~a~~~~~~~~~~g~~~----------------~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~ 217 (705)
..+...|+.++|...++++.+..... + ...+...+..+-.....+.|...+..... .+.
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 88899999999999999987642110 0 01122222223333334555555544322 111
Q ss_pred c-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHH----
Q 005265 218 V-SWNSLITCYEQNGPASDALEVFVRMMASGIEP-DEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLG---- 291 (705)
Q Consensus 218 ~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---- 291 (705)
. ........+...|++++|+..|++..+. .| +...+..+...+.+.|++++|+..++++++...-.+....+
T Consensus 269 ~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 269 AFRARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 1 1123456778899999999999999884 34 56778888899999999999999999999864212221111
Q ss_pred --------HHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhcCCHHHHHHHHHhcCCC---CeehHHHHH
Q 005265 292 --------NALVDMYAKCGKLNEARCVFDRMPI---RNVVSETSMVSGYAKASSVKSARLMFTKMLER---NVVSWNALI 357 (705)
Q Consensus 292 --------~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li 357 (705)
......+.+.|++++|...|++... .+...+..+...+...|++++|++.|++..+. +...+..+.
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2234567889999999999998863 34556777888999999999999999998653 344566666
Q ss_pred HHHHHcCChHHHHHHHHHhhhCCCCc--------chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHH
Q 005265 358 AGYTQNGENEEALGLFRLLKRESVCP--------THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVG 429 (705)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~m~~~g~~p--------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (705)
..|. .+++++|+.+++.+....... ....+..+...+...|++++|.+.++.+++.. +.+..++
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-------P~~~~~~ 498 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-------PGSVWLT 498 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHH
Confidence 6664 567899999988765331100 11234455667788999999999999999886 3577788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh---------hHHH
Q 005265 430 NSLIDMYMKCGSVEDGCRIFETMVE--R-DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV---------TMIG 497 (705)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~ 497 (705)
..+...|.+.|++++|...|+++.+ | +...+..+...+...++.++|+..++++......++.. .+..
T Consensus 499 ~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 499 YRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 8999999999999999999998753 3 55566666666788999999999998865432222221 2334
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005265 498 VLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRN 575 (705)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 575 (705)
....+...|+.++|..+++. .+++...+..+...|.+.|++++|++.|++. ...| +...+..++..+...|+
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 56678899999999999872 2345667788999999999999999999988 4455 57789999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 576 IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 576 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
+++|++.++++.+..|+++..+..++.++...|++++|.++++++....
T Consensus 653 ~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 653 LAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 9999999999999999999999999999999999999999999998654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-22 Score=224.71 Aligned_cols=564 Identities=10% Similarity=0.001 Sum_probs=333.8
Q ss_pred cCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC--CChhhHHHHHHHHHhcCChhHHHHHH
Q 005265 31 RSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN--KNVFTWNSIITGLLKWGFIDDASRLF 108 (705)
Q Consensus 31 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~ 108 (705)
..|++++|...|++..+..... ..++..|...|.+.|++++|+..+++..+ |+-..|..++..+ ++.++|..++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 3499999999999999887444 88889999999999999999999999876 4323333333333 8888999999
Q ss_pred hcCCC--C-CcccHHHHHHH--------HHhCCChHHHHHHHHHhHhCCCCCChhhHHHH-HHHhhCCCCcHHHHHHHHH
Q 005265 109 ASMPE--R-DQCSWNSMVSG--------FAQHDRFSEALGYFVKMHSENFALSEYSFGSA-LSACAGSVDFKMGTQVHAL 176 (705)
Q Consensus 109 ~~~~~--~-~~~~~~~li~~--------~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~ 176 (705)
+++.. | +...+..+... |.+. ++|.+.++ .....+.|+....... ...|...++++.|..++..
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 98864 3 33444444444 5555 45555554 3333444555555555 8888899999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHhhc-CCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHhH
Q 005265 177 LSKSRYSSDVYMGSALIDMYGK-CGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIE-PDEVT 254 (705)
Q Consensus 177 ~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t 254 (705)
+.+.+.. +......|-.+|.. .++ +.+..++....+.+...+..+...|.+.|+.++|.++++++...... |...+
T Consensus 208 L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 208 ARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 9998644 45556666677877 466 88888877655567888889999999999999999998887654222 33333
Q ss_pred HHHH------------------------------HHHHHccCChHHHHHH-----------------------------H
Q 005265 255 LASV------------------------------VSACASLAAFKEGLQI-----------------------------H 275 (705)
Q Consensus 255 ~~~l------------------------------l~~~~~~~~~~~a~~~-----------------------------~ 275 (705)
+.-+ +..+.+.++++.+.++ +
T Consensus 286 ~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 365 (987)
T PRK09782 286 WLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLA 365 (987)
T ss_pred HHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHH
Confidence 2222 2222333333333322 1
Q ss_pred HHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-C-C----cccHHHHHHHHHhcCC---HHHHHH------
Q 005265 276 ARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPI-R-N----VVSETSMVSGYAKASS---VKSARL------ 340 (705)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-~----~~~~~~li~~~~~~~~---~~~A~~------ 340 (705)
..+.+. .+-+.....-+.-...+.|+.++|.++|+..-. + + ...-+-++..|.+.+. ..++..
T Consensus 366 ~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 366 RLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 111111 122333333333444556666666666665543 1 1 1122244444444433 111111
Q ss_pred -------------------HHHhcCC---C--CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHh
Q 005265 341 -------------------MFTKMLE---R--NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACA 396 (705)
Q Consensus 341 -------------------~~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 396 (705)
.+..... + +...|..+..++.. +++++|+..+.+.... .|+......+...+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~ 520 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAY 520 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHH
Confidence 1111111 1 33445555555554 5666666655555543 244433333333344
Q ss_pred hcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHH---HHHHHHHHcCCh
Q 005265 397 NLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWN---AMIVGCAQNGYG 473 (705)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~ 473 (705)
..|+++.|...++.+.... |+...+..+...+.+.|++++|...++...+.++..++ .+.......|++
T Consensus 521 ~~Gr~eeAi~~~rka~~~~--------p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 521 QVEDYATALAAWQKISLHD--------MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HCCCHHHHHHHHHHHhccC--------CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCH
Confidence 6666666666666654332 22333445555666666666666666665533222222 222223334666
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHH
Q 005265 474 TEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIE 552 (705)
Q Consensus 474 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 552 (705)
++|+..+++.++ ..|+...+..+..++.+.|++++|...++.... ..|+ ...+..+...+...|++++|++.++
T Consensus 593 ~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 593 ELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666666 455555666666666666666666666666543 3444 5556666666666666666666666
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 553 AM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 553 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+. ...| +...+..+..++...|++++|+..+++++++.|++..+....+++..+..+++.|.+-++....
T Consensus 668 ~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 668 RAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 65 3344 3455666666666666666666666666666666666666666666666666666666655443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=190.90 Aligned_cols=377 Identities=15% Similarity=0.169 Sum_probs=303.7
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChh-HHHHH
Q 005265 217 IVSWNSLITCYEQNGPASDALEVFVRMMASGIEPD-EVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLV-LGNAL 294 (705)
Q Consensus 217 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l 294 (705)
..+|+.+...+-..|++++|+.+|+.|.+ ++|+ ...|..+..++...|+.+.|.+.|...++ +.|+.. ..+.+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~l 190 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcch
Confidence 34666677777777777777777777766 3443 34566666677777777777777777666 334433 33344
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--C-CcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCe---ehHHHHHHHHHHcCChHH
Q 005265 295 VDMYAKCGKLNEARCVFDRMPI--R-NVVSETSMVSGYAKASSVKSARLMFTKMLERNV---VSWNALIAGYTQNGENEE 368 (705)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~ 368 (705)
...+...|++++|...|.+..+ | =.+.|+.|...+..+|+...|+..|++.+.-|+ ..|-.|...|...+.+++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 5555566777777777766543 2 235678888888888888888888888866544 468889999999999999
Q ss_pred HHHHHHHhhhCCCCcch-hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 005265 369 ALGLFRLLKRESVCPTH-YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCR 447 (705)
Q Consensus 369 A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 447 (705)
|+..|.+.... .|+. ..+..+...|...|.++.|...+++.++... .-+..|+.|..++...|++.+|..
T Consensus 271 Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-------~F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 271 AVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-------NFPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred HHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-------CchHHHhHHHHHHHhccchHHHHH
Confidence 99999887764 5654 5677777778889999999999999998763 557899999999999999999999
Q ss_pred HHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 005265 448 IFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHG 523 (705)
Q Consensus 448 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 523 (705)
.+.+... ....+.+.|...|...|.+++|..+|....+ +.|.- ..++.+...|-++|++++|+..+++.. .
T Consensus 342 cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---r 416 (966)
T KOG4626|consen 342 CYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---R 416 (966)
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---h
Confidence 9998763 3567889999999999999999999999998 78876 489999999999999999999999876 6
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 005265 524 LAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLL 600 (705)
Q Consensus 524 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 600 (705)
+.|+ ...|+.+...|-..|+...|++.+.+. .+.|. ....+.|.+.|...|+..+|+..|+.+++++|+.+.+|..+
T Consensus 417 I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 417 IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 8898 889999999999999999999999988 66775 55788899999999999999999999999999999999999
Q ss_pred HHHHHhcCChhH
Q 005265 601 SNMYAELGRWGE 612 (705)
Q Consensus 601 ~~~~~~~g~~~~ 612 (705)
+.++.-..+|.+
T Consensus 497 lh~lq~vcdw~D 508 (966)
T KOG4626|consen 497 LHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHhcccc
Confidence 998877666665
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-19 Score=197.32 Aligned_cols=563 Identities=9% Similarity=-0.012 Sum_probs=402.6
Q ss_pred chhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC--CC-hhhHHHHHHH-
Q 005265 19 SSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN--KN-VFTWNSIITG- 94 (705)
Q Consensus 19 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~- 94 (705)
...+..+.+.+...|+.++|+...++..+.. +.|...+..+ ..+ +++++|..+++++.. |+ ..++..+...
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~ 152 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSE 152 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHh
Confidence 4556778899999999999999999999875 3455555444 222 999999999999875 33 3444444444
Q ss_pred -------HHhcCChhHHHHHHhcCCCCC--cccHHH-HHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhC-
Q 005265 95 -------LLKWGFIDDASRLFASMPERD--QCSWNS-MVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAG- 163 (705)
Q Consensus 95 -------~~~~g~~~~A~~~~~~~~~~~--~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~- 163 (705)
|.+.+...++++ .+...++ ...... +.+.|.+.|++++|+.++.++.+.++. +..-...+-.++..
T Consensus 153 ~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~ 229 (987)
T PRK09782 153 VGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAG 229 (987)
T ss_pred hccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHh
Confidence 777777777776 3333343 443444 489999999999999999999998644 44445666667776
Q ss_pred CCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC-----CCcchH------------------
Q 005265 164 SVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE-----RNIVSW------------------ 220 (705)
Q Consensus 164 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~------------------ 220 (705)
.++ +.+..++.. .+.-+......+...|.+.|+.+.|.+++++++. |+..+|
T Consensus 230 l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~ 304 (987)
T PRK09782 230 QLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANY 304 (987)
T ss_pred hCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccch
Confidence 466 667666443 3345888999999999999999999999999873 211111
Q ss_pred ------------HHHHHHHHhcCChhHHHHHHHH--------HHHCCC-C------------------C-CHhHHHHHHH
Q 005265 221 ------------NSLITCYEQNGPASDALEVFVR--------MMASGI-E------------------P-DEVTLASVVS 260 (705)
Q Consensus 221 ------------~~li~~~~~~g~~~~A~~~~~~--------m~~~g~-~------------------p-~~~t~~~ll~ 260 (705)
-.++..+.+.++++-+.++..- +.-.+. . | +....-.+.-
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~ 384 (987)
T PRK09782 305 TVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTW 384 (987)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 1124555666666655544211 000000 0 1 2222222222
Q ss_pred HHHccCChHHHHHHHHHHHH-cCCCCCChhHHHHHHHHHHhcCC---hHHHHHHHh------------------------
Q 005265 261 ACASLAAFKEGLQIHARLMR-CEKLRNDLVLGNALVDMYAKCGK---LNEARCVFD------------------------ 312 (705)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~------------------------ 312 (705)
.....|+.++|.+++..... .+.-..+....+.|+..|.+.+. ...+..+-.
T Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (987)
T PRK09782 385 QLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI 464 (987)
T ss_pred HHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence 34567889999999998877 22223355666788899988877 333333311
Q ss_pred -hCCC---C--CcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHH--HHHcCChHHHHHHHHHhhhCCCCcc
Q 005265 313 -RMPI---R--NVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAG--YTQNGENEEALGLFRLLKRESVCPT 384 (705)
Q Consensus 313 -~~~~---~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~ 384 (705)
.... + +...|..+...+.. ++.++|...+.+.....+..++.+..+ +...|++++|...|+++... .|+
T Consensus 465 ~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~ 541 (987)
T PRK09782 465 VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMS 541 (987)
T ss_pred HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCC
Confidence 1111 1 34456666666665 788889998877755434455555444 46899999999999997654 455
Q ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC--CCChhHHHH
Q 005265 385 HYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV--ERDWVSWNA 462 (705)
Q Consensus 385 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 462 (705)
...+..+..++.+.|+++.|...+....+... .+...+..+.......|++++|...+++.. .|+...|..
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-------~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~ 614 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-------GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVA 614 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 55566677788899999999999999988753 444445455555566799999999999987 467788999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh
Q 005265 463 MIVGCAQNGYGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGR 540 (705)
Q Consensus 463 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 540 (705)
+...+.+.|++++|+..|++.+. ..|+.. .+..+..++...|+.++|+..++...+ ..|+ ...+..+..++..
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~---l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK---GLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999 678765 677777789999999999999998875 3565 7889999999999
Q ss_pred cCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCh
Q 005265 541 AGCLDEAKTLIEAM-PMQPDA-VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRW 610 (705)
Q Consensus 541 ~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 610 (705)
.|++++|+..+++. ...|+. .+.........+..+++.+.+.+++...++|+.. +....+.++...+++
T Consensus 690 lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 690 LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhcccc
Confidence 99999999999998 667765 4455556667788889999999999999999876 677777777766654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-20 Score=182.05 Aligned_cols=419 Identities=13% Similarity=0.118 Sum_probs=343.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHhccCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHcc
Q 005265 189 GSALIDMYGKCGRVSCARRVFDGMRERNI---VSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASL 265 (705)
Q Consensus 189 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 265 (705)
...|..-..+.|++..|++.-..+-..|. ...-.+-..+.+..+++....--....+. ..--..+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence 44555666788999999988766654322 12222233455555555554433333321 223456899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccc---HHHHHHHHHhcCCHHHHHHHH
Q 005265 266 AAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVS---ETSMVSGYAKASSVKSARLMF 342 (705)
Q Consensus 266 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~ 342 (705)
|+++.|++.++.+++.. +.....|..+..++...|+.+.|...|.+...-|+.. .+.+...+...|++.+|...+
T Consensus 130 g~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999999964 4567889999999999999999999998877544432 233445566789999999988
Q ss_pred HhcCCC---CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcch-hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCC
Q 005265 343 TKMLER---NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTH-YTFGNLLNACANLADLQLGRQAHTHVVKHGLRF 418 (705)
Q Consensus 343 ~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 418 (705)
.+.++. -.+.|..|...+...|+...|+..|++..+. .|+. ..|..+-..+...+.++.|...+..+....
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--- 282 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR--- 282 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC---
Confidence 887653 3478999999999999999999999999874 4543 467788888888899999999988887665
Q ss_pred CCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hh
Q 005265 419 LSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE--R-DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VT 494 (705)
Q Consensus 419 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~ 494 (705)
+....++..+...|...|.++-|+..+++..+ | =...|+.|..++-..|++.+|...|.+.+. +.|+. ..
T Consensus 283 ----pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hada 356 (966)
T KOG4626|consen 283 ----PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADA 356 (966)
T ss_pred ----CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHH
Confidence 45677888888999999999999999999874 4 356899999999999999999999999998 77876 48
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACK 571 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 571 (705)
.+.+...+...|.+++|..+|.... .+.|. ....+.|...|-..|++++|+..|++. .++|+ ..+++.+...|.
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHH
Confidence 8999999999999999999999665 56788 778999999999999999999999998 78887 558899999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 572 VHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 572 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
..|+.+.|.+.+.+++.++|.-..++..|+.+|-..|+..+|+.-++...+..
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999988643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-18 Score=189.75 Aligned_cols=417 Identities=14% Similarity=0.075 Sum_probs=288.7
Q ss_pred HHHHHHHhhcCCChHHHHHHHhccCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHcc
Q 005265 189 GSALIDMYGKCGRVSCARRVFDGMRE--RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPD-EVTLASVVSACASL 265 (705)
Q Consensus 189 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~ 265 (705)
+......|.+.|+++.|++.|++..+ |+...|..+..+|.+.|++++|++.++...+. .|+ ...+..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 44556677778888888888877653 66667777777888888888888888887764 343 44666677777788
Q ss_pred CChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhc
Q 005265 266 AAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKM 345 (705)
Q Consensus 266 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 345 (705)
|++++|...+..+....++.+ .....++..+........+...++.- ..+...+..+.. |........+..-+...
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRN--EQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCcc--HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 888888777766655431211 11112222111111122333333221 222223332222 22211111111111111
Q ss_pred CCCCe---ehHHHHHHHH---HHcCChHHHHHHHHHhhhCC-CCcc-hhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCC
Q 005265 346 LERNV---VSWNALIAGY---TQNGENEEALGLFRLLKRES-VCPT-HYTFGNLLNACANLADLQLGRQAHTHVVKHGLR 417 (705)
Q Consensus 346 ~~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 417 (705)
.+.+. ..+..+...+ ...+++++|+..|++..+.+ ..|+ ...+..+...+...|+++.|...+...++..
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-- 361 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-- 361 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence 11111 1122221111 23478999999999998765 3343 4456777777888999999999999998875
Q ss_pred CCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-h
Q 005265 418 FLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-V 493 (705)
Q Consensus 418 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 493 (705)
+.+...|..+...+...|++++|...|++..+ .+...|..+...+...|++++|+..|++.++ +.|+. .
T Consensus 362 -----P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~ 434 (615)
T TIGR00990 362 -----PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIF 434 (615)
T ss_pred -----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHH
Confidence 35567888899999999999999999998753 3678899999999999999999999999998 56764 5
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-------H-HH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDA-------V-IW 563 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-------~-~~ 563 (705)
.+..+..++...|++++|+..|+...+. .|+ ...++.+..++...|++++|++.|++. .+.|+. . .+
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 6777888899999999999999988753 454 788999999999999999999999986 444421 1 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+..+..+...|++++|...++++++++|++...+..++.++.+.|++++|.+.+++..+.
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 222222445699999999999999999999989999999999999999999999998753
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-19 Score=182.30 Aligned_cols=267 Identities=14% Similarity=0.103 Sum_probs=206.8
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcc---hhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHh
Q 005265 351 VSWNALIAGYTQNGENEEALGLFRLLKRESVCPT---HYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIF 427 (705)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 427 (705)
.+|..+...+...|++++|..+++.+...+..++ ..++..+...+...|+++.|..++..+.+.. +.+..
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-------~~~~~ 142 (389)
T PRK11788 70 ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-------DFAEG 142 (389)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-------cchHH
Confidence 4566677777777777777777777766432221 2345666777777777888877777777653 45667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCCC--------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHH
Q 005265 428 VGNSLIDMYMKCGSVEDGCRIFETMVERD--------WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGV 498 (705)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l 498 (705)
+++.++..+.+.|++++|.+.++.+.+.+ ...|..+...+...|++++|...|+++.+. .|+. ..+..+
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 220 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILL 220 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHH
Confidence 78888888888888888888888775321 123556777888899999999999999884 4553 477778
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 005265 499 LCACSHAGLVEEGRKYFSSMSKEHGLAPL--KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIWGSLLAACKVHRN 575 (705)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~ 575 (705)
...+...|++++|.++++++.+. .|+ ...+..++.+|.+.|++++|...++++ ...|+...+..++..+.+.|+
T Consensus 221 a~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~ 297 (389)
T PRK11788 221 GDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEG 297 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCC
Confidence 88899999999999999988653 344 466788999999999999999999987 456777777888888999999
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHh---cCChhHHHHHHHHHHhCCCccCCc
Q 005265 576 IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAE---LGRWGEVVRVRKLMRKRGVVKQPG 630 (705)
Q Consensus 576 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 630 (705)
+++|..+++++++..|++.. +..+...+.. .|+.+++..++++|.+++++++|.
T Consensus 298 ~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 298 PEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 99999999999999998864 5555655553 569999999999999999988885
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-16 Score=165.08 Aligned_cols=539 Identities=12% Similarity=0.039 Sum_probs=379.7
Q ss_pred hhhHHHHHhccCCCChh-hHHHHHHHHH--hcCChhHHHHHHhcCCC--C--CcccHHHHHHHHHhCCChHHHHHHHHHh
Q 005265 70 LYGARKVFDKMSNKNVF-TWNSIITGLL--KWGFIDDASRLFASMPE--R--DQCSWNSMVSGFAQHDRFSEALGYFVKM 142 (705)
Q Consensus 70 ~~~A~~~~~~~~~~~~~-~~~~li~~~~--~~g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~~~~~~a~~~~~~m 142 (705)
++.|...|....+.++. +.-.+..++. ..+++-.|+.+|..... | -+...-.+..++.+.|+.+.|+..|.+.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 57888888887663322 2223334433 45789999999988432 2 1112233446677899999999999999
Q ss_pred HhCCCCCChhhHHHHHHHhhCC---CCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCC---
Q 005265 143 HSENFALSEYSFGSALSACAGS---VDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERN--- 216 (705)
Q Consensus 143 ~~~g~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--- 216 (705)
++..+ -+..++..|--.-... ..+..+..++...-... .-++.+.+.|.+.|.-.|+++.+..+...+...+
T Consensus 226 lqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 226 LQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 88643 2333333332222222 33445555555554443 3367788888999999999999999988876532
Q ss_pred ---cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHH
Q 005265 217 ---IVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEV--TLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLG 291 (705)
Q Consensus 217 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 291 (705)
..+|-.+.++|-..|++++|...|.+..+ ..|+.+ .+..+.+.+...|+++.+...|+.+.+. .+.+..+.
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm 379 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETM 379 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHH
Confidence 23577889999999999999999987765 345554 3455778888999999999999999997 46667788
Q ss_pred HHHHHHHHhcC----ChHHHHHHHhhCCCCC---cccHHHHHHHHHhcCC------HHHHHHHHHhc-CCCCeehHHHHH
Q 005265 292 NALVDMYAKCG----KLNEARCVFDRMPIRN---VVSETSMVSGYAKASS------VKSARLMFTKM-LERNVVSWNALI 357 (705)
Q Consensus 292 ~~li~~~~~~g----~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~------~~~A~~~~~~~-~~~~~~~~~~li 357 (705)
..|...|...+ ..+.|..++.+...+. ...|-.+...+-...- +..|..++... ....+...|.+.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVA 459 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence 88888888775 5677888887776553 3445444444443332 23344333322 235667789999
Q ss_pred HHHHHcCChHHHHHHHHHhhhC---CCCcch------hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhH
Q 005265 358 AGYTQNGENEEALGLFRLLKRE---SVCPTH------YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFV 428 (705)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~m~~~---g~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 428 (705)
..+...|.+.+|...|+..... ...+|. .+--.+.......++.+.|.+++..+.+..+ .-+..
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-------~YId~ 532 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-------GYIDA 532 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-------hhHHH
Confidence 9999999999999999988754 122333 2233344556677899999999999988763 33445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHhc
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLC-GEKPDHVTMIGVLCACSH 504 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~ 504 (705)
|-.+..+.-..+...+|...+.... ..++..|+-+...+.....+.-|.+-|....+. ...+|..+...|.+.|..
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 5555544445577888999988876 457888888888999998888888877776654 223666666666665532
Q ss_pred ------------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 005265 505 ------------AGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMP--MQPDAVIWGSLLAAC 570 (705)
Q Consensus 505 ------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 570 (705)
.+..++|++.|+++.+. -+-+...-|-+.-+++..|++.+|..+|.+.. ...+..+|..+..+|
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~ 690 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCY 690 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHH
Confidence 34567888888877643 23347777888889999999999999999872 223566889999999
Q ss_pred HhcCCHHHHHHHHHHHHhh--CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 571 KVHRNIMLGEYVAKKLLEI--EPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
...|++..|.++|+..++. ..++..+...|+.++.+.|++.+|.+.+......
T Consensus 691 ~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 691 VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999999999999999876 3456677889999999999999999998887754
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-16 Score=162.90 Aligned_cols=552 Identities=14% Similarity=0.095 Sum_probs=305.5
Q ss_pred CCChhhHHHHHHHHHHc--CCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCChhhHHHHHHHH---Hh---cCChhH
Q 005265 32 SKSVSDTRRVHARIIKS--QFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGL---LK---WGFIDD 103 (705)
Q Consensus 32 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---~~---~g~~~~ 103 (705)
.+++..|+.+|...... ..+||+.+. +-.++.+.|+.+.|+..|+...+-|+...++++... .. ...+..
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHH
Confidence 45677777777765433 244444332 335556677777777777766664443333332211 11 123344
Q ss_pred HHHHHhcCC---CCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCC--CChhhHHHHHHHhhCCCCcHHHHHHHHHHH
Q 005265 104 ASRLFASMP---ERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFA--LSEYSFGSALSACAGSVDFKMGTQVHALLS 178 (705)
Q Consensus 104 A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 178 (705)
+..++...- ..|++..+.|...|.-.|++..++.+...+...... .-+..|..+.+++-..|+++.|...|-+..
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 444444332 236666677777777777777777776666553211 122346666666667777777777766666
Q ss_pred HcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCC
Q 005265 179 KSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE---RNIVSWNSLITCYEQNG----PASDALEVFVRMMASGIEPD 251 (705)
Q Consensus 179 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~ 251 (705)
+.....-+..+--|..+|.+.|+++.+...|+.+.+ .+..+...|...|+..+ ..+.|..++.+..+.- ..|
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d 413 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVD 413 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-ccc
Confidence 553221122333455667777777777777766653 23344555555555543 2344444444444321 234
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHH----HcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHH
Q 005265 252 EVTLASVVSACASLAAFKEGLQIHARLM----RCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVS 327 (705)
Q Consensus 252 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 327 (705)
...|..+...+-. ++...++.+|..+. ..+ -++.+.+.|.+...+...|.++.|...|......
T Consensus 414 ~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~-~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~---------- 481 (1018)
T KOG2002|consen 414 SEAWLELAQLLEQ-TDPWASLDAYGNALDILESKG-KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK---------- 481 (1018)
T ss_pred HHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcC-CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh----------
Confidence 4455444444433 33333354444433 233 3455666666666666777777766665543311
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCe------ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHH-hhccc
Q 005265 328 GYAKASSVKSARLMFTKMLERNV------VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNAC-ANLAD 400 (705)
Q Consensus 328 ~~~~~~~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~ 400 (705)
+..-..++. .+--.+...+-..++++.|.+.|+...+. .|..++...-+.+. ...+.
T Consensus 482 --------------~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~ 545 (1018)
T KOG2002|consen 482 --------------LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNN 545 (1018)
T ss_pred --------------hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccC
Confidence 000000111 11112344444556666666666666654 34433222111111 22345
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC-----CChhHHHHHHHHHHH------
Q 005265 401 LQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE-----RDWVSWNAMIVGCAQ------ 469 (705)
Q Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~------ 469 (705)
..+|...+..+.... ..++.+++-+.+.|.+...+..|.+-|..+.+ +|..+.-+|.+.|.+
T Consensus 546 ~~ea~~~lk~~l~~d-------~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~ 618 (1018)
T KOG2002|consen 546 LYEASLLLKDALNID-------SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPS 618 (1018)
T ss_pred cHHHHHHHHHHHhcc-------cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccc
Confidence 556666666665544 34555566666666666666666664444431 233443344443322
Q ss_pred ------cCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 005265 470 ------NGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAG 542 (705)
Q Consensus 470 ------~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 542 (705)
.+..+.|+++|.+.++ ..| |...-+.+...++..|++.+|..+|.++.... .....+|-.+..+|..+|
T Consensus 619 rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 619 RNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHH
Confidence 2345667777777776 333 44566666667777788888888887776542 223456777777788888
Q ss_pred ChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH-------------
Q 005265 543 CLDEAKTLIEAM----PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA------------- 605 (705)
Q Consensus 543 ~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~------------- 605 (705)
++..|+++|+.. .-..+..+.+.|..++...|.+.+|.+.+..+....|.++..-.+++-+..
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t 774 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRT 774 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccccc
Confidence 888888887765 123466677777777777788888888888888777777776555554433
Q ss_pred ------hcCChhHHHHHHHHHHhCCC
Q 005265 606 ------ELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 606 ------~~g~~~~A~~~~~~~~~~~~ 625 (705)
..+..++|.++|..+..-+-
T Consensus 775 ~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 775 LEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34567788888888876543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-18 Score=176.25 Aligned_cols=299 Identities=13% Similarity=0.074 Sum_probs=159.1
Q ss_pred HHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCC---hhhHHHHHHHhhcCCCh
Q 005265 126 FAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSD---VYMGSALIDMYGKCGRV 202 (705)
Q Consensus 126 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~ 202 (705)
+...|++++|+..|.++.+.++ .+..++..+...+...|+++.|..+++.+.+.+..++ ...+..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3455666666666666665432 2334555555555556666666666555554321111 12344444555555555
Q ss_pred HHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHH
Q 005265 203 SCARRVFDGMRE---RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLM 279 (705)
Q Consensus 203 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 279 (705)
+.|.++|+++.+ .+..+++.++..+.+.|++++|.+.++.+...+..+....
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------- 178 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------- 178 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-------------------------
Confidence 555555555443 2333444445555555555555555554444321111000
Q ss_pred HcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHH
Q 005265 280 RCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAG 359 (705)
Q Consensus 280 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 359 (705)
....+..+...+.+.|++++|...|+++.+. ...+...+..+...
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------------------------~p~~~~~~~~la~~ 223 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAA----------------------------DPQCVRASILLGDL 223 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH----------------------------CcCCHHHHHHHHHH
Confidence 0112233444555555555555444322210 11123345556666
Q ss_pred HHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhc
Q 005265 360 YTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKC 439 (705)
Q Consensus 360 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 439 (705)
+.+.|++++|..+|+++.+.+......++..+..++...|+++.|...+..+.+.. |+...+..++..+.+.
T Consensus 224 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--------p~~~~~~~la~~~~~~ 295 (389)
T PRK11788 224 ALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--------PGADLLLALAQLLEEQ 295 (389)
T ss_pred HHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHh
Confidence 66777777777777776654322223445556666666666666666666665543 3334446677777777
Q ss_pred CCHHHHHHHHHccC--CCChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChh
Q 005265 440 GSVEDGCRIFETMV--ERDWVSWNAMIVGCAQ---NGYGTEALGLFKKMLLCGEKPDHV 493 (705)
Q Consensus 440 g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 493 (705)
|++++|..+|+++. .|+...++.++..+.. .|+..+++.++++|.+.+++|++.
T Consensus 296 g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 296 EGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 77777777776654 3566666666666554 447777777777777776666655
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-16 Score=171.23 Aligned_cols=249 Identities=12% Similarity=0.064 Sum_probs=199.2
Q ss_pred cCCHHHHHHHHHhcCCC------CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcc-hhhHHHHHHHHhhcccHHHH
Q 005265 332 ASSVKSARLMFTKMLER------NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPT-HYTFGNLLNACANLADLQLG 404 (705)
Q Consensus 332 ~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a 404 (705)
.+++++|.+.|+..... ....|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 45677788888777532 3456788888889999999999999998875 354 45777788888899999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHH
Q 005265 405 RQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFK 481 (705)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 481 (705)
...+..+++.. +.+..++..+...|...|++++|...|++... .+...|..+...+.+.|++++|+..|+
T Consensus 385 ~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 385 EEDFDKALKLN-------SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred HHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999998876 46778899999999999999999999998863 356778888899999999999999999
Q ss_pred HHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-h-------HHHHHHHHHHhcCChHHHHHHHH
Q 005265 482 KMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLK-D-------HYTCMVDLLGRAGCLDEAKTLIE 552 (705)
Q Consensus 482 ~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~ 552 (705)
+.++ ..|+ ...+..+..++...|++++|++.|+.... +.|+. . .++.....+...|++++|.++++
T Consensus 458 ~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~ 532 (615)
T TIGR00990 458 RCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCE 532 (615)
T ss_pred HHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9988 4565 46788888899999999999999998764 33431 1 12222334455799999999999
Q ss_pred hC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 553 AM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 553 ~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
+. ...|+ ...+..+...+.+.|++++|.+.|+++.++.+...
T Consensus 533 kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 533 KALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 86 55664 45788889999999999999999999999877543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-16 Score=171.46 Aligned_cols=369 Identities=11% Similarity=0.001 Sum_probs=241.4
Q ss_pred cCCChHHHHHHHhccCC------CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHH
Q 005265 198 KCGRVSCARRVFDGMRE------RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEG 271 (705)
Q Consensus 198 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 271 (705)
+..+++.-.-+|..-++ .+..-...++..+.+.|++++|..+++........+.. .+..++.++...|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHH
Confidence 44555555555555443 12223445667778888888888888888775433333 333444555668888888
Q ss_pred HHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCee
Q 005265 272 LQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVV 351 (705)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 351 (705)
...++.+++.. +.+...+..+...+...|++++|...|++.... ...+..
T Consensus 96 ~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l----------------------------~P~~~~ 145 (656)
T PRK15174 96 LQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA----------------------------FSGNSQ 145 (656)
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------CCCcHH
Confidence 88888888863 555667777777888888888888666544311 112344
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHH
Q 005265 352 SWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNS 431 (705)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (705)
.|..+...+...|++++|...++.+......+.. .+.. +..+...|++++|...+..+.+... .++......
T Consensus 146 a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~------~~~~~~~~~ 217 (656)
T PRK15174 146 IFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIAT-CLSFLNKSRLPEDHDLARALLPFFA------LERQESAGL 217 (656)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHH-HHHHHHcCCHHHHHHHHHHHHhcCC------CcchhHHHH
Confidence 5556666666666666666666666543322111 1212 2235566667777666666655432 233334444
Q ss_pred HHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCCh-hhHHHHHHHHh
Q 005265 432 LIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTE----ALGLFKKMLLCGEKPDH-VTMIGVLCACS 503 (705)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 503 (705)
+...+...|++++|...|++... .+...+..+...+...|++++ |+..|++..+ ..|+. ..+..+...+.
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~ 295 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALI 295 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHH
Confidence 55667777777777777776653 255667777777888887775 7888888887 55664 47777888888
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHH
Q 005265 504 HAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIW-GSLLAACKVHRNIMLGE 580 (705)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~a~ 580 (705)
..|++++|...++...+. .|+ ...+..+..+|.+.|++++|+..++++ ...|+...+ ..+..++...|+.++|.
T Consensus 296 ~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~ 372 (656)
T PRK15174 296 RTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAE 372 (656)
T ss_pred HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHH
Confidence 888888888888887643 455 566777888888889999998888877 345655443 33455678889999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 581 YVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 581 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
..|+++++..|++.. ..+++|...+....+
T Consensus 373 ~~l~~al~~~P~~~~------------~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 373 SVFEHYIQARASHLP------------QSFEEGLLALDGQIS 402 (656)
T ss_pred HHHHHHHHhChhhch------------hhHHHHHHHHHHHHH
Confidence 999999998888642 445566666655554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-15 Score=169.02 Aligned_cols=408 Identities=11% Similarity=0.030 Sum_probs=233.8
Q ss_pred ChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC---CCcchHHHHHHH
Q 005265 150 SEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE---RNIVSWNSLITC 226 (705)
Q Consensus 150 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 226 (705)
+..-..-.+......|+.+.|.+++....... +.+...+..+...+.+.|++++|.++|++..+ .+...+..+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44444555555666677777776666665522 33444566667777777777777777777432 334556667777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHH
Q 005265 227 YEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNE 306 (705)
Q Consensus 227 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 306 (705)
+...|++++|+..+++..+. .|+...+..+..++...|+.++|...++++++.. +.+...+..+...+...|..+.
T Consensus 93 l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHH
Confidence 77777777777777777764 3332226666666777777788888877777753 4455555666777777777777
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHH-----HHcCCh---HHHHHHHHHhhh
Q 005265 307 ARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGY-----TQNGEN---EEALGLFRLLKR 378 (705)
Q Consensus 307 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~-----~~~g~~---~~A~~~~~~m~~ 378 (705)
|...++.... ++. +..-+. . .....++... ...+++ ++|+..++.+.+
T Consensus 169 Al~~l~~~~~-~p~-~~~~l~-------~---------------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~ 224 (765)
T PRK10049 169 ALGAIDDANL-TPA-EKRDLE-------A---------------DAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA 224 (765)
T ss_pred HHHHHHhCCC-CHH-HHHHHH-------H---------------HHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh
Confidence 7766665553 111 000000 0 0001111111 112223 667777777764
Q ss_pred C-CCCcchh-hHH----HHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHcc
Q 005265 379 E-SVCPTHY-TFG----NLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETM 452 (705)
Q Consensus 379 ~-g~~p~~~-t~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 452 (705)
. ...|+.. .+. ..+.++...+++++|...|+.+.+.+.. .|+ .....+...|...|++++|+..|+++
T Consensus 225 ~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~-----~P~-~a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 225 LWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQI-----IPP-WAQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred hcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC-----CCH-HHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3 1223221 111 1123344557777777777777665420 122 12222466777777777777777776
Q ss_pred CCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----------CCCCh---hhHHHHHHHHhccCcHHHH
Q 005265 453 VERD-------WVSWNAMIVGCAQNGYGTEALGLFKKMLLCG-----------EKPDH---VTMIGVLCACSHAGLVEEG 511 (705)
Q Consensus 453 ~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~~~~~ll~~~~~~g~~~~a 511 (705)
.+.+ ...+..+..++...|++++|..+++++.+.. -.|+. ..+..+...+...|++++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 4322 2234455556777777888887777777631 01221 1233444556666677777
Q ss_pred HHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005265 512 RKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLE 588 (705)
Q Consensus 512 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 588 (705)
++.++++... .|+ ...+..+..++...|+.++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++
T Consensus 379 ~~~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 379 EMRARELAYN---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7666666532 233 556666666666666666666666665 34454 34444555556666666666666666666
Q ss_pred hCCCCCc
Q 005265 589 IEPSNSG 595 (705)
Q Consensus 589 ~~p~~~~ 595 (705)
..|+++.
T Consensus 456 ~~Pd~~~ 462 (765)
T PRK10049 456 REPQDPG 462 (765)
T ss_pred hCCCCHH
Confidence 6666654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-16 Score=171.17 Aligned_cols=396 Identities=10% Similarity=0.045 Sum_probs=261.3
Q ss_pred ChhhHHHHHHHhhcCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHH
Q 005265 185 DVYMGSALIDMYGKCGRVSCARRVFDGMRE---RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPD-EVTLASVVS 260 (705)
Q Consensus 185 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 260 (705)
+.....-.+.+....|+.++|++++.+... .+...+..+...+...|++++|.++|++..+. .|+ ...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 334444555556667777777777766553 22234666666777777777777777776653 233 334445555
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 005265 261 ACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARL 340 (705)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 340 (705)
.+...|++++|...++++++.. +.+.. +..+..++...|+.++|...++++...+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~---------------------- 146 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA---------------------- 146 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------
Confidence 6666677777777777766653 33444 6666666666666666665554433111
Q ss_pred HHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchh------hHHHHHHHH-----hhcccH---HHHHH
Q 005265 341 MFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHY------TFGNLLNAC-----ANLADL---QLGRQ 406 (705)
Q Consensus 341 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~-----~~~~~~---~~a~~ 406 (705)
..+...+..+...+...+..++|+..++.... .|+.. ....++... ...+.+ +.|..
T Consensus 147 ------P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 147 ------PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred ------CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence 11333444455566666666667666665443 22210 011111111 112233 66777
Q ss_pred HHHHHHHhCCCCCCCCCCcHh-HH-H---HHHHHHHhcCCHHHHHHHHHccCCCC---hh-HHHHHHHHHHHcCChHHHH
Q 005265 407 AHTHVVKHGLRFLSGEESDIF-VG-N---SLIDMYMKCGSVEDGCRIFETMVERD---WV-SWNAMIVGCAQNGYGTEAL 477 (705)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~-~~-~---~li~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~ 477 (705)
.++.+.+.-.. .|+.. .+ . ..+..+...|++++|+..|+.+.+.+ +. .-..+...|...|++++|+
T Consensus 218 ~~~~ll~~~~~-----~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~ 292 (765)
T PRK10049 218 QYDALEALWHD-----NPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQ 292 (765)
T ss_pred HHHHHHhhccc-----CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 88887754210 22221 11 1 11234457799999999999987542 11 1222567899999999999
Q ss_pred HHHHHHHHCCCCCCh-----hhHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHH
Q 005265 478 GLFKKMLLCGEKPDH-----VTMIGVLCACSHAGLVEEGRKYFSSMSKEHG----------LAPL---KDHYTCMVDLLG 539 (705)
Q Consensus 478 ~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~ 539 (705)
..|+++.+. .|.. .....+..++...|++++|.++++.+..... -.|+ ...+..+...+.
T Consensus 293 ~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~ 370 (765)
T PRK10049 293 SILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK 370 (765)
T ss_pred HHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence 999998874 3332 3456666788999999999999998865411 1123 234567788999
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHH
Q 005265 540 RAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVR 617 (705)
Q Consensus 540 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 617 (705)
..|++++|++.++++ ...| +...+..+...+...|++++|++.++++++++|++...+..++..+...|++++|..++
T Consensus 371 ~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 371 YSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999997 3344 56788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC
Q 005265 618 KLMRKR 623 (705)
Q Consensus 618 ~~~~~~ 623 (705)
+.+.+.
T Consensus 451 ~~ll~~ 456 (765)
T PRK10049 451 DDVVAR 456 (765)
T ss_pred HHHHHh
Confidence 999864
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.2e-16 Score=168.65 Aligned_cols=323 Identities=11% Similarity=-0.010 Sum_probs=251.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCC
Q 005265 255 LASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASS 334 (705)
Q Consensus 255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 334 (705)
...++..+.+.|+++.|..++...+... +.+......++......|+++.|...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~------------------------ 98 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQV------------------------ 98 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHH------------------------
Confidence 3345556667777777777777777653 34444455555555566666666644
Q ss_pred HHHHHHHHHhcCC---CCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHH
Q 005265 335 VKSARLMFTKMLE---RNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHV 411 (705)
Q Consensus 335 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 411 (705)
|+++.. .+...|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+++.|...+..+
T Consensus 99 -------l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 99 -------VNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred -------HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 444422 345678888899999999999999999998752 234567778888999999999999999988
Q ss_pred HHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 005265 412 VKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER----DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCG 487 (705)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 487 (705)
..... .+...+..+. .+...|++++|...++.+.+. +...+..+...+...|++++|+..++++.+.
T Consensus 171 ~~~~P-------~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~- 241 (656)
T PRK15174 171 AQEVP-------PRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR- 241 (656)
T ss_pred HHhCC-------CCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 77654 3333443443 478899999999999987643 3334455677889999999999999999984
Q ss_pred CCCCh-hhHHHHHHHHhccCcHHH----HHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-
Q 005265 488 EKPDH-VTMIGVLCACSHAGLVEE----GRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD- 559 (705)
Q Consensus 488 ~~p~~-~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~- 559 (705)
.|+. ..+..+...+...|++++ |...|+.+.+ +.|+ ...+..+...+.+.|++++|+..+++. ...|+
T Consensus 242 -~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~ 317 (656)
T PRK15174 242 -GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL 317 (656)
T ss_pred -CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 5654 577778889999999986 7999998864 4565 788999999999999999999999988 44564
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 560 AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 560 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
...+..+..++...|++++|...++++++.+|++...+..++.++...|++++|...+++..+..
T Consensus 318 ~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 318 PYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 56777788889999999999999999999999988767778999999999999999999987654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7e-15 Score=138.48 Aligned_cols=332 Identities=15% Similarity=0.176 Sum_probs=238.2
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHH--HccCChh-hHHHHHhccCC---CChhhHHHHHH
Q 005265 20 SPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVY--AKCGCLY-GARKVFDKMSN---KNVFTWNSIIT 93 (705)
Q Consensus 20 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~-~A~~~~~~~~~---~~~~~~~~li~ 93 (705)
.+=+.|++. ..+|...++.-+|+.|.+.|++.+..+-..|++.- .++..+. .-++.|-.|.+ .+..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW----- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW----- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc-----
Confidence 344555554 45678899999999999999999988877775543 3333333 33455666654 444555
Q ss_pred HHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHH
Q 005265 94 GLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQV 173 (705)
Q Consensus 94 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 173 (705)
+.|.+.+ ++-+...+...+|.+||.++|+--..+.|..++++-.....+.+..+||.+|.+-+-. ..+++
T Consensus 191 ---K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~L 260 (625)
T KOG4422|consen 191 ---KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKL 260 (625)
T ss_pred ---ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHH
Confidence 3454433 4445555667899999999999999999999999999888899999999999876533 33889
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh
Q 005265 174 HALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEV 253 (705)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 253 (705)
..+|....+.||..|+|+++++..+.|+++.|.+. |++++.+|++.|+.|...
T Consensus 261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLs 313 (625)
T KOG4422|consen 261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLS 313 (625)
T ss_pred HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchh
Confidence 99999999999999999999999999999888754 466888999999999999
Q ss_pred HHHHHHHHHHccCChHH-HHHHHHHHHHc--C-CCC----CChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHH
Q 005265 254 TLASVVSACASLAAFKE-GLQIHARLMRC--E-KLR----NDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSM 325 (705)
Q Consensus 254 t~~~ll~~~~~~~~~~~-a~~~~~~~~~~--~-~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 325 (705)
+|..++..+++.++..+ +..++..++.. | .++ .|...+...+..|.+..+.+-|.++-.-+...+-
T Consensus 314 Syh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N------ 387 (625)
T KOG4422|consen 314 SYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN------ 387 (625)
T ss_pred hHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc------
Confidence 99998888888777644 44444444432 1 022 2344556667777777777777765433221100
Q ss_pred HHHHHhcCCHHHHHHHHHhcC--CCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHH
Q 005265 326 VSGYAKASSVKSARLMFTKML--ERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQL 403 (705)
Q Consensus 326 i~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 403 (705)
+ +.+. ....+-|..+....|+....+.-+.+|+.|.-.-+-|+..+...++++....+.++-
T Consensus 388 ---------~-------~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ 451 (625)
T KOG4422|consen 388 ---------W-------KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEV 451 (625)
T ss_pred ---------h-------hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchh
Confidence 0 0000 012234556667777788888888888888877778888888888888888888888
Q ss_pred HHHHHHHHHHhCC
Q 005265 404 GRQAHTHVVKHGL 416 (705)
Q Consensus 404 a~~~~~~~~~~~~ 416 (705)
..+++..++..|.
T Consensus 452 ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 452 IPRIWKDSKEYGH 464 (625)
T ss_pred HHHHHHHHHHhhh
Confidence 8888888887775
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-14 Score=156.08 Aligned_cols=435 Identities=9% Similarity=0.025 Sum_probs=247.4
Q ss_pred HhCCChHHHHHHHHHhHhCCCCCCh--hhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHH
Q 005265 127 AQHDRFSEALGYFVKMHSENFALSE--YSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSC 204 (705)
Q Consensus 127 ~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 204 (705)
.+.|++..|+..|++..+.. |+. ..+ .++..+...|+.++|...+++.... -+........+...|...|++++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 34555555555555554432 221 122 4444444445555555555554411 01111112222334555555555
Q ss_pred HHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 005265 205 ARRVFDGMRE---RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRC 281 (705)
Q Consensus 205 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 281 (705)
|.++|+++.+ .+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+..++++++.
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 5555555543 12333444455555555666666665555542 344444433333333334444466666666654
Q ss_pred CCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHH
Q 005265 282 EKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIR-NVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGY 360 (705)
Q Consensus 282 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 360 (705)
. +.+...+..++..+.+.|-...|.++..+-+.- +...+.-+ . .+.|.+..+-...++.
T Consensus 199 ~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l-~-------~~~~a~~vr~a~~~~~---------- 258 (822)
T PRK14574 199 A--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL-E-------RDAAAEQVRMAVLPTR---------- 258 (822)
T ss_pred C--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH-H-------HHHHHHHHhhcccccc----------
Confidence 2 444555566666666666666666555443310 00000000 0 0000011111000000
Q ss_pred HHcCC---hHHHHHHHHHhhhC-CCCcchhh-----HHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHH
Q 005265 361 TQNGE---NEEALGLFRLLKRE-SVCPTHYT-----FGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNS 431 (705)
Q Consensus 361 ~~~g~---~~~A~~~~~~m~~~-g~~p~~~t-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (705)
...++ .+.|+.-++.+... +-.|.... ..=.+-++...++...+.+.++.+...+. +....+-.+
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~------~~P~y~~~a 332 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY------KMPDYARRW 332 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC------CCCHHHHHH
Confidence 00111 24455555554431 11232211 11233456667777778888877777665 455667778
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCC
Q 005265 432 LIDMYMKCGSVEDGCRIFETMVER---------DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGE-----------KPD 491 (705)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~ 491 (705)
+.++|...+++++|..+|+.+... +......|.-+|...+++++|..+++++.+.-. .||
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 888888888888888888876432 223346778888888999999999988887311 122
Q ss_pred h--h-hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHH
Q 005265 492 H--V-TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSL 566 (705)
Q Consensus 492 ~--~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l 566 (705)
. . .+..++..+...|++.+|.+.++.+... -+-|......+.+++...|...+|++.++.. ...|+ ..+....
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 2 2 3445566788999999999999999653 3345888999999999999999999999877 45664 5566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 567 LAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
+.++...+++++|..+.+.+++..|++..
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 77788899999999999999999999975
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-14 Score=155.40 Aligned_cols=192 Identities=10% Similarity=0.051 Sum_probs=157.4
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----CCChhhHHHHHHHH
Q 005265 432 LIDMYMKCGSVEDGCRIFETMVER----DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGE-----KPDHVTMIGVLCAC 502 (705)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~ll~~~ 502 (705)
.+-++.+.|+..++++.|+.+... ...+-.++..+|...+++++|+.+|+.+..... .++......|.-++
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 344667889999999999999843 233556788999999999999999999977431 12233357788999
Q ss_pred hccCcHHHHHHHHHHhHHhcC------------CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005265 503 SHAGLVEEGRKYFSSMSKEHG------------LAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLL 567 (705)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~~------------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 567 (705)
...+++++|..+++.+.+... ..|| ...+..++..+...|++.+|++.++++ ...| |...+..+.
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A 457 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA 457 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999975311 1223 344556788899999999999999998 3344 788889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 568 AACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 568 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
..+...|.+.+|+..++.+..++|++......++..+...|+|.+|..+.+.+.+.
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998777643
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-14 Score=147.19 Aligned_cols=246 Identities=10% Similarity=0.031 Sum_probs=170.0
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCC
Q 005265 5 RSVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKN 84 (705)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 84 (705)
.|+..++..|+.|+..||..++..|+..|+.+.|- +|..|.-...+.....++.++......++.+.++ +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 68899999999999999999999999999999999 9999999999999999999999999999988776 788
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHhc-C---CC---C-------------------CcccHHHHHHHHHhCCChHHHHHH
Q 005265 85 VFTWNSIITGLLKWGFIDDASRLFAS-M---PE---R-------------------DQCSWNSMVSGFAQHDRFSEALGY 138 (705)
Q Consensus 85 ~~~~~~li~~~~~~g~~~~A~~~~~~-~---~~---~-------------------~~~~~~~li~~~~~~~~~~~a~~~ 138 (705)
..+|+.|+.+|.+.|++.. .+..++ + .. + -...-...+....-.|-++.++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998655 222222 1 10 0 000112233344445556666666
Q ss_pred HHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCc-
Q 005265 139 FVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNI- 217 (705)
Q Consensus 139 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 217 (705)
+..+....-. . ++..+++-+.... .-.+++.+......-.|++.++..++++-.-.|+++.|..++.+|.+...
T Consensus 162 l~~~Pvsa~~-~--p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 162 LAKVPVSAWN-A--PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HhhCCccccc-c--hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 6555432111 0 1111344443322 23344444444332257888888888888888888888888888876432
Q ss_pred ---chHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCC
Q 005265 218 ---VSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAA 267 (705)
Q Consensus 218 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 267 (705)
.-|-.|+-+ .++...+..+++-|.+.|+.|+..|+..-+..+...|.
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 223334333 77777788888888888888888888777777666443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-12 Score=125.43 Aligned_cols=590 Identities=13% Similarity=0.098 Sum_probs=427.8
Q ss_pred CCchhHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC---CChhhH
Q 005265 17 LDSSPFAKLLDSCLR-----SKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN---KNVFTW 88 (705)
Q Consensus 17 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 88 (705)
.|+-.|-+=|++-.. .++...|+.++....+.. +-++..|-+-.+.=-..|++..|+.+...=.+ ++...|
T Consensus 244 vDpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvW 322 (913)
T KOG0495|consen 244 VDPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVW 322 (913)
T ss_pred cCchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHH
Confidence 355556666665432 357788888888888776 44555555555555667888888777654322 111222
Q ss_pred ------------HHHHHH-----------HHhcCChh----HHHHHHhcCCC--C-CcccHHHHHHHHHhCCChHHHHHH
Q 005265 89 ------------NSIITG-----------LLKWGFID----DASRLFASMPE--R-DQCSWNSMVSGFAQHDRFSEALGY 138 (705)
Q Consensus 89 ------------~~li~~-----------~~~~g~~~----~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~ 138 (705)
.+++.- +++.-+++ .-.++++...+ | ++..|.. .......+.|.-+
T Consensus 323 LeaiRLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKa----AVelE~~~daril 398 (913)
T KOG0495|consen 323 LEAIRLHPPDVAKTVVANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKA----AVELEEPEDARIL 398 (913)
T ss_pred HHHHhcCChHHHHHHHHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHH----HHhccChHHHHHH
Confidence 222211 11221211 11223322221 2 2223333 3334455667777
Q ss_pred HHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC----
Q 005265 139 FVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE---- 214 (705)
Q Consensus 139 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 214 (705)
+.+..+. ++.+. -|.-++++...++.|+.++....+. ++.+..+|.+-...--..|+.+...++.++-..
T Consensus 399 L~rAvec-cp~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ 472 (913)
T KOG0495|consen 399 LERAVEC-CPQSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQA 472 (913)
T ss_pred HHHHHHh-ccchH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 7776654 22222 3344556667788888888888776 566777777777667778888888877765431
Q ss_pred ----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCh
Q 005265 215 ----RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPD--EVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDL 288 (705)
Q Consensus 215 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 288 (705)
-+-..|-.=...+-..|..-.+..+.......|+.-. ..||..-...|.+.+.++-++.+|..+++. ++.+.
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~ 550 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKK 550 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchh
Confidence 2333465666667777777777778877777776543 357888888899999999999999998886 56777
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeehHHHHHHHHHH
Q 005265 289 VLGNALVDMYAKCGKLNEARCVFDRMPI---RNVVSETSMVSGYAKASSVKSARLMFTKMLE---RNVVSWNALIAGYTQ 362 (705)
Q Consensus 289 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 362 (705)
.+|...+..--..|..+.-..+|++... .....|-.....+...|++..|+.++....+ .+...|-.-+.....
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~e 630 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFE 630 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc
Confidence 8888888777778899998888888763 3445667777778888999999999888754 355678888888889
Q ss_pred cCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCH
Q 005265 363 NGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSV 442 (705)
Q Consensus 363 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 442 (705)
+.+++.|..+|.+... ..|+...|.--+..---.++.++|.++++..++.- +.-...|-.+.+.+-+.+++
T Consensus 631 n~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-------p~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 631 NDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-------PDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred cccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-------CchHHHHHHHhHHHHHHHHH
Confidence 9999999999998876 45777777666666667788999999998888875 35567888899999999999
Q ss_pred HHHHHHHHccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHh
Q 005265 443 EDGCRIFETMVER---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLVEEGRKYFSSM 518 (705)
Q Consensus 443 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (705)
+.|.+.|..-.+. .+..|-.+...--+.|..-.|..++++..-. .| |...|...++.-.+.|+.+.|..+..+.
T Consensus 702 e~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 702 EMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999876643 5667888888888889999999999998874 35 4468888999999999999999999888
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 005265 519 SKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYV 598 (705)
Q Consensus 519 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 598 (705)
.++ ++.+...|..-|.+..+.++-..+.+.+++.. -|+....++...+.....++.|.+-|.++++.+|++..+|.
T Consensus 780 LQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa 855 (913)
T KOG0495|consen 780 LQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWA 855 (913)
T ss_pred HHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHH
Confidence 775 34557888888999999999888888888875 35555666777788888999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEE
Q 005265 599 LLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEI 636 (705)
Q Consensus 599 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 636 (705)
.+...+...|.-++-.+++.+.... .|.-|..|..+
T Consensus 856 ~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 856 WFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 9999999999999999999887643 34446667654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.9e-13 Score=135.98 Aligned_cols=539 Identities=14% Similarity=0.054 Sum_probs=304.6
Q ss_pred ccCChhhHHHHHhccCC---CChhhHHHHHHHHHhcCChhHHHHHHh---cCCCCCcccHHHHHHHHHhCCChHHHHHHH
Q 005265 66 KCGCLYGARKVFDKMSN---KNVFTWNSIITGLLKWGFIDDASRLFA---SMPERDQCSWNSMVSGFAQHDRFSEALGYF 139 (705)
Q Consensus 66 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 139 (705)
..|++++|.+++.++.. .+...|..|...|-..|+.+++...+- .+.+.|..-|..+-....+.|++++|.-+|
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 34666666666666644 334566666666666666666665442 223345556666666666666666666666
Q ss_pred HHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHH----HHHhhcCCChHHHHHHHhccCC-
Q 005265 140 VKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSAL----IDMYGKCGRVSCARRVFDGMRE- 214 (705)
Q Consensus 140 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~~~~- 214 (705)
.+..+..+ ++....---...|-+.|+...|..-+.++.....+.|..-...+ ++.|...++-+.|.+.++....
T Consensus 231 ~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 66666532 23333334444556666666666666666665433233323222 3344455555666666665543
Q ss_pred ----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC---------------------------CCCCHhHHHHHHHHHH
Q 005265 215 ----RNIVSWNSLITCYEQNGPASDALEVFVRMMASG---------------------------IEPDEVTLASVVSACA 263 (705)
Q Consensus 215 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~p~~~t~~~ll~~~~ 263 (705)
-+...++.++..+.+...++.|.....++.... +.++...+ -+.-++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhh
Confidence 233456677777777777777777666665511 11222221 1111222
Q ss_pred ccCChHHHHHHHHHHHHcC-CCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC----CcccHHHHHHHHHhcCCHHHH
Q 005265 264 SLAAFKEGLQIHARLMRCE-KLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIR----NVVSETSMVSGYAKASSVKSA 338 (705)
Q Consensus 264 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A 338 (705)
..+..+....+...+.+.. ....+...|.-+.++|...|++..|.++|..+... +...|-.+...|...|..+.|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 3333333333333334333 02233556777777778888888888777777532 445677777777777888888
Q ss_pred HHHHHhcCCCCeehHH---HHHHHHHHcCChHHHHHHHHHhhhC--------CCCcchhhHHHHHHHHhhcccHHHHHHH
Q 005265 339 RLMFTKMLERNVVSWN---ALIAGYTQNGENEEALGLFRLLKRE--------SVCPTHYTFGNLLNACANLADLQLGRQA 407 (705)
Q Consensus 339 ~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 407 (705)
...|++.+..++..++ .|...+-+.|++++|++.+..+... +..|+........+.+...|+.++-..+
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 8887777554443333 3445667778888888877775421 2334444444445555666666554443
Q ss_pred HHHHHHhCC----CC------------CCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHcc--------CCCChh----H
Q 005265 408 HTHVVKHGL----RF------------LSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETM--------VERDWV----S 459 (705)
Q Consensus 408 ~~~~~~~~~----~~------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~----~ 459 (705)
-..++.... .+ ..+..........++.+-.+.++......-...- ..-... .
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 333332111 00 0000122222333344444444322222211111 011222 3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCh---hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHH
Q 005265 460 WNAMIVGCAQNGYGTEALGLFKKMLLCGE--KPDH---VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL---KDHY 531 (705)
Q Consensus 460 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~ 531 (705)
+.-++.++++.+++++|+.+...+..... .++. ..-...+.++...+++..|...++.|...++...+ ...|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34567788999999999999999887532 2222 12234556777899999999999999876554433 4567
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 005265 532 TCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIWGSLLAA--CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAE 606 (705)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 606 (705)
++....+.+.|+-.-=.+++... ...|+..-...++.+ ....+.+.-|...+-++....|++|.+-.+++.++..
T Consensus 709 n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 76666666666655444544444 333433222233333 5677889999999999999999999877777777654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-12 Score=122.78 Aligned_cols=432 Identities=15% Similarity=0.085 Sum_probs=300.8
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhh--CCCCcHHH-HHHHHHHHHcCCCCChhhHHHH
Q 005265 116 QCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACA--GSVDFKMG-TQVHALLSKSRYSSDVYMGSAL 192 (705)
Q Consensus 116 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 192 (705)
+++=|.|+.. ..+|.+.++.-+++.|.+.|+..+...-..+++.-+ ...++.-+ .+.|-.|.+.|-.. ..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-cccc---
Confidence 3456666654 457789999999999999998877776666555332 22233222 33444455554332 2222
Q ss_pred HHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHH
Q 005265 193 IDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGL 272 (705)
Q Consensus 193 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 272 (705)
+.|++.+ ++-+...+...+|..||.++++-...+.|.++|++......+.+..+|+.++.+-.-.. ..
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cH
Confidence 4455544 44455556678999999999999999999999999999889999999999998765443 37
Q ss_pred HHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeh
Q 005265 273 QIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVS 352 (705)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 352 (705)
++..+|.... +.||..++|+++.+..+.|+++.|.
T Consensus 259 ~Lv~EMisqk-m~Pnl~TfNalL~c~akfg~F~~ar-------------------------------------------- 293 (625)
T KOG4422|consen 259 KLVAEMISQK-MTPNLFTFNALLSCAAKFGKFEDAR-------------------------------------------- 293 (625)
T ss_pred HHHHHHHHhh-cCCchHhHHHHHHHHHHhcchHHHH--------------------------------------------
Confidence 7888888888 9999999999999999999999888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHH-HHHHHHHHHH--hCCCCCCCCCCcHhHH
Q 005265 353 WNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQL-GRQAHTHVVK--HGLRFLSGEESDIFVG 429 (705)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~--~~~~~~~~~~~~~~~~ 429 (705)
..|++++.+|++.|+.|.-.+|..+|..+++.++..+ +..+...+.. .|-.+..-.+.+...+
T Consensus 294 --------------~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 294 --------------KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred --------------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 4577888999999999999999999999888887754 3333333332 1222222334566677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCCC-----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 005265 430 NSLIDMYMKCGSVEDGCRIFETMVER-----------DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGV 498 (705)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 498 (705)
.+.++.|.+..+.+-|.++-.-.... ...-|..+....|+....+.-+.+|+.|.-.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 78888888888999888876654321 2234666778888999999999999999988888999999999
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-C--------hHH-----HHHHHHh-------C-CC
Q 005265 499 LCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAG-C--------LDE-----AKTLIEA-------M-PM 556 (705)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~--------~~~-----A~~~~~~-------~-~~ 556 (705)
+++....|.++-..++|..++. +|..-......-+...+++.. . +.. |..+++. + ..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 9999999999999999988843 454444444444444444433 1 100 1111111 1 12
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCCchHH---HHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 557 QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIE---PSNSGPYV---LLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 557 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
.-.....+.++-.+.+.|..++|.+++.-..+.. |..+. .+ -+.+.-.+......|..+++-|...+.
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~-lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPL-LNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 2344455666666778888888888888776542 33332 33 344444556777788888888765443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-11 Score=120.80 Aligned_cols=454 Identities=13% Similarity=0.057 Sum_probs=284.4
Q ss_pred HhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHH----HHHcCCCCChhhHHHHHHHhhcCCCh
Q 005265 127 AQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHAL----LSKSRYSSDVYMGSALIDMYGKCGRV 202 (705)
Q Consensus 127 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~g~~~~~~~~~~li~~~~~~g~~ 202 (705)
++..-++.|.++++...+. ++.+...|.+....--..|+.+...++.+. +...|+..+...|..=...+-+.|..
T Consensus 417 arLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 417 ARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 3333444444444444432 333444444444444444444444444332 22234444444444444444444444
Q ss_pred HHHHHHHhccCC------CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHccCChHHHHHHH
Q 005265 203 SCARRVFDGMRE------RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPD-EVTLASVVSACASLAAFKEGLQIH 275 (705)
Q Consensus 203 ~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 275 (705)
-.+..+...... .--.+|+.-...|.+.+.++-|..+|...++. -|. ...|......=-..|..+.-..++
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 444443333221 11234555555555555555555555554442 222 223333333333344555555555
Q ss_pred HHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhcCCHHHHHHHHHhc--CCCCe
Q 005265 276 ARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPI---RNVVSETSMVSGYAKASSVKSARLMFTKM--LERNV 350 (705)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~--~~~~~ 350 (705)
.+++.. .+-....+-....-+-..|++..|+.++...-+ .+...|-+-+.....+..++.|+.+|.+. ..++.
T Consensus 574 qkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 574 QKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred HHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 555554 233334444444444455555555555544432 12334445555555555566666666665 34566
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchh-hHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHH
Q 005265 351 VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHY-TFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVG 429 (705)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (705)
..|..-+...--.+..++|++++++.++. -|+.. .|..+-+.+.+.++++.|+..+..-.+.- +..+..|
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-------P~~ipLW 722 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-------PNSIPLW 722 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-------CCCchHH
Confidence 77777777777788899999999888764 45543 56666677788888999888887665554 4677888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC
Q 005265 430 NSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAG 506 (705)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 506 (705)
-.|...--+.|.+-.|..+|++..- .|...|-..|..-.+.|+.+.|..+..+.++. .+-+...|..-|....+.+
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcc
Confidence 9999999999999999999998763 37789999999999999999999999998884 3334457777777777777
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005265 507 LVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAK 584 (705)
Q Consensus 507 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 584 (705)
+-......++ ....|+.+.-++...+....++++|.+.|++. ...|| -.+|-.+...+.++|.-+.-.+++.
T Consensus 802 rkTks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 802 RKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred cchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 6555544444 24567778888899999999999999999988 55665 4578888888999999999999999
Q ss_pred HHHhhCCCCCchHHHHH
Q 005265 585 KLLEIEPSNSGPYVLLS 601 (705)
Q Consensus 585 ~~~~~~p~~~~~~~~l~ 601 (705)
+....+|.+...|....
T Consensus 876 ~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 876 KCETAEPTHGELWQAVS 892 (913)
T ss_pred HHhccCCCCCcHHHHHh
Confidence 99999998877665543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.7e-12 Score=129.55 Aligned_cols=582 Identities=12% Similarity=0.074 Sum_probs=386.8
Q ss_pred CCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccC---CCChhhHHHHHHHHHhcCChhHHHHHH
Q 005265 32 SKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMS---NKNVFTWNSIITGLLKWGFIDDASRLF 108 (705)
Q Consensus 32 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 108 (705)
.|++++|.+++.++++.. +.....|..|...|-..|+.+++...+--.. ..|...|..+-....+.|.++.|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 499999999999999876 6677789999999999999999988765542 356788999999999999999999999
Q ss_pred hcCCCCCcccHH---HHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHH----HHHhhCCCCcHHHHHHHHHHHHc-
Q 005265 109 ASMPERDQCSWN---SMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSA----LSACAGSVDFKMGTQVHALLSKS- 180 (705)
Q Consensus 109 ~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~~- 180 (705)
.+..+.++.-|- .-...|-+.|+...|...|.++.+..++.|..-+..+ +..+...++-+.|.+.++.....
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 998865444444 3456788899999999999999987553344344444 44556667778888888877663
Q ss_pred CCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC--------------------------CCcchHH----HHHHHHHhc
Q 005265 181 RYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE--------------------------RNIVSWN----SLITCYEQN 230 (705)
Q Consensus 181 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------------------~~~~~~~----~li~~~~~~ 230 (705)
+-..+...++.++..|.+...++.|......+.. ++..+|+ -+.-++...
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 2234566788888888888888888777655432 1112222 122233444
Q ss_pred CChhHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHH
Q 005265 231 GPASDALEVFVRMMASGIEP--DEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEAR 308 (705)
Q Consensus 231 g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 308 (705)
...+....+........+.| +...|..+..++...|.+..|..++..+.... ...+..+|-.+..+|...|..+.|.
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE-GYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-cccchhhhHHHHHHHHHHhhHHHHH
Confidence 44444555555555555333 45678899999999999999999999998876 4445789999999999999999999
Q ss_pred HHHhhCCCC---CcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCee------------hHHHHHHHHHHcCChHHHHHHH
Q 005265 309 CVFDRMPIR---NVVSETSMVSGYAKASSVKSARLMFTKMLERNVV------------SWNALIAGYTQNGENEEALGLF 373 (705)
Q Consensus 309 ~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~~g~~~~A~~~~ 373 (705)
..|+.+..- +...-.+|-..+.+.|+.++|.+.+..+..||.. .--.....+.+.|+.++=+..-
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999998743 4444556677889999999999999998666522 1122345567778877755554
Q ss_pred HHhhhCC-----C-----------------CcchhhHHHHHHHHhhcccHHHHHHHHH------HHHHhCCCCCCCCCCc
Q 005265 374 RLLKRES-----V-----------------CPTHYTFGNLLNACANLADLQLGRQAHT------HVVKHGLRFLSGEESD 425 (705)
Q Consensus 374 ~~m~~~g-----~-----------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~------~~~~~~~~~~~~~~~~ 425 (705)
..|+... + +-...+...++.+-.+.++.....+... .....++. ..+
T Consensus 550 ~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls-----idd 624 (895)
T KOG2076|consen 550 STLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS-----IDD 624 (895)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc-----HHH
Confidence 4444321 1 1112222333333333333221111111 11111220 112
Q ss_pred H-hHHHHHHHHHHhcCCHHHHHHHHHccCCCC-----h----hHHHHHHHHHHHcCChHHHHHHHHHHHHC-CC--CCCh
Q 005265 426 I-FVGNSLIDMYMKCGSVEDGCRIFETMVERD-----W----VSWNAMIVGCAQNGYGTEALGLFKKMLLC-GE--KPDH 492 (705)
Q Consensus 426 ~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--~p~~ 492 (705)
. ..+.-++..+++.+++++|..+...+...+ . ..-..++.+.+..+++..|...++.|+.. +. .|..
T Consensus 625 wfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q 704 (895)
T KOG2076|consen 625 WFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQ 704 (895)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHH
Confidence 2 455667889999999999999988876432 2 23345667778899999999999999875 21 3333
Q ss_pred h-hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 005265 493 V-TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLK--DHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIWGSLLA 568 (705)
Q Consensus 493 ~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 568 (705)
. .|+..++...+.++-.--.+++..+. ...|+. ..+......+..++.+.-|+..+-+. ...||....+.+++
T Consensus 705 ~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lg 781 (895)
T KOG2076|consen 705 LNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLG 781 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 3 44445555555554433333333322 223332 22222233456778888888876655 34566443433333
Q ss_pred H-HH----------hcCCHHHHHHHHHHHHhhCCC--CCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 569 A-CK----------VHRNIMLGEYVAKKLLEIEPS--NSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 569 ~-~~----------~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
. +. +|-..-.+...+.+..++... .-.++.+++.+|...|-..-|..+++++..-
T Consensus 782 lafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 782 LAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 3 21 233456677777777776433 5567899999999999999999999999853
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.9e-14 Score=133.13 Aligned_cols=450 Identities=13% Similarity=0.061 Sum_probs=275.8
Q ss_pred HHHHHhCCChHHHHHHHHHhHhCCCCCChhhHH-HHHHHhhCCCCcHHHHHHHHHHHHcCCCCChh----hHHHHHHHhh
Q 005265 123 VSGFAQHDRFSEALGYFVKMHSENFALSEYSFG-SALSACAGSVDFKMGTQVHALLSKSRYSSDVY----MGSALIDMYG 197 (705)
Q Consensus 123 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~ 197 (705)
..-|..+....+|+..++-+.+....|+...+. .+-..+.+.+.+..|.+++...+..-...+-. ..+.+--.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 334445556667777777766666666654432 22234455566666766666666543222222 2223333456
Q ss_pred cCCChHHHHHHHhccCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHH
Q 005265 198 KCGRVSCARRVFDGMRE--RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIH 275 (705)
Q Consensus 198 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 275 (705)
+.|+++.|+..|+...+ ||..+--.|+-++..-|+.++..+.|.+|..-...||..-|. +.
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-------~~---------- 350 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-------KE---------- 350 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-------CC----------
Confidence 66777777777766543 554443333333444566666666666666543333332220 00
Q ss_pred HHHHHcCCCCCChhHHHHHH-----HHHHhcC--ChHHHHHHHhhCC----CCCcc---cH------------------H
Q 005265 276 ARLMRCEKLRNDLVLGNALV-----DMYAKCG--KLNEARCVFDRMP----IRNVV---SE------------------T 323 (705)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~li-----~~~~~~g--~~~~A~~~~~~~~----~~~~~---~~------------------~ 323 (705)
. -.|+....+.-+ .-.-+.+ +.+.++-.-.++. .++.. -| -
T Consensus 351 ------~-ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei 423 (840)
T KOG2003|consen 351 ------K-DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEI 423 (840)
T ss_pred ------c-CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhh
Confidence 0 011111111111 0111111 1111111111111 11110 00 0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHH-----HHHHHcC-ChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhh
Q 005265 324 SMVSGYAKASSVKSARLMFTKMLERNVVSWNALI-----AGYTQNG-ENEEALGLFRLLKRESVCPTHYTFGNLLNACAN 397 (705)
Q Consensus 324 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 397 (705)
.-...|.++|+++.|.++++-...+|..+-.+.. .-|.+.| ++..|-.+-+..+..+ +-+....+.--+....
T Consensus 424 ~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 424 NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFA 502 (840)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeee
Confidence 1122377899999999998888776654433222 2233333 4555655555444322 1111111111122234
Q ss_pred cccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChH
Q 005265 398 LADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGT 474 (705)
Q Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 474 (705)
.|+++.|.+.+.+.....- .-+...-.+.-.+.+.|++++|++.|-++. ..+....-.+.+.|....+..
T Consensus 503 ngd~dka~~~ykeal~nda-------sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDA-------SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred cCcHHHHHHHHHHHHcCch-------HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence 6899999999999886553 223333334556788999999999997764 457777778888999999999
Q ss_pred HHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHH
Q 005265 475 EALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIE 552 (705)
Q Consensus 475 ~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 552 (705)
+|++++-+... +.|+. ..+..+...|-+.|+-.+|.+.+-.- +..-| +..+..-|..-|....-+++|+..|+
T Consensus 576 qaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 576 QAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred HHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999977766 66654 57888888999999999999877633 34444 58888888889999999999999999
Q ss_pred hC-CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005265 553 AM-PMQPDAVIWGSLLAAC-KVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGR 609 (705)
Q Consensus 553 ~~-~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 609 (705)
+. -++|+..-|..++..| ++.|++.+|..+|+..-...|.+......|+.++...|-
T Consensus 651 kaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 651 KAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 98 5789999999888875 578999999999999999999999999999999888774
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.2e-13 Score=127.83 Aligned_cols=213 Identities=15% Similarity=0.153 Sum_probs=176.3
Q ss_pred hcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCCh
Q 005265 397 NLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYG 473 (705)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 473 (705)
-.|+.-.+.+-|+..++... .+...|--+..+|....+.++-...|.... ..|+.+|-.-.+.+.-.+++
T Consensus 338 L~g~~~~a~~d~~~~I~l~~-------~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDP-------AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hcCCchhhhhhHHHHHhcCc-------ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHH
Confidence 35788888888998888764 344447778888999999999999998875 34777888888888888999
Q ss_pred HHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 005265 474 TEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIE 552 (705)
Q Consensus 474 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 552 (705)
++|..=|++.++ +.|+. ..|..+..+..+.+.++++...|++..+++ +.-+++|+....++...+++++|.+.|+
T Consensus 411 e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 411 EEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 999999999998 77866 478888888889999999999999998763 3448899999999999999999999999
Q ss_pred hC-CCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 553 AM-PMQPD---------AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 553 ~~-~~~p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
.. .+.|+ +.+--+++-. +=.+++.+|+.+++++++++|....+|..|+.+-.++|+.++|+++|++..
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 87 44444 2222223222 223899999999999999999999999999999999999999999999875
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-14 Score=133.85 Aligned_cols=479 Identities=13% Similarity=0.094 Sum_probs=232.5
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHHHHc----CCCCchhhHHHHHHHHHccCChhhHHHHHhccCC----CChhhH-HH
Q 005265 20 SPFAKLLDSCLRSKSVSDTRRVHARIIKS----QFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN----KNVFTW-NS 90 (705)
Q Consensus 20 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~ 90 (705)
--|...|.-.-..|+-+.++--+++-... .+...-.+...|.+-|.......+|...|+-+.+ ||.... -.
T Consensus 163 ~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmn 242 (840)
T KOG2003|consen 163 GDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMN 242 (840)
T ss_pred hhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeee
Confidence 34556666666666666666555543322 2344444555566666666677777777766544 333211 23
Q ss_pred HHHHHHhcCChhHHHHHHhcCC----CCCc----ccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhh
Q 005265 91 IITGLLKWGFIDDASRLFASMP----ERDQ----CSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACA 162 (705)
Q Consensus 91 li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 162 (705)
+.+.+.+.+.+.+|++.++-.. .-+. ...+.+.-.+.+.|.++.|+..|+...+. .|+..+-..|+-.+.
T Consensus 243 igni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f 320 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAF 320 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhe
Confidence 3455666677777777665432 2111 13344444566777888888888777664 456655545555555
Q ss_pred CCCCcHHHHHHHHHHHHcCCCC------------ChhhHHHHH-----HHhhcCC--ChHHHH----HHHhccCCCCcch
Q 005265 163 GSVDFKMGTQVHALLSKSRYSS------------DVYMGSALI-----DMYGKCG--RVSCAR----RVFDGMRERNIVS 219 (705)
Q Consensus 163 ~~~~~~~a~~~~~~~~~~g~~~------------~~~~~~~li-----~~~~~~g--~~~~A~----~~~~~~~~~~~~~ 219 (705)
..|+-+..++.|..|+.....| +....|.-| .-..+.. +.++++ ++..-+..|+-..
T Consensus 321 ~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~ 400 (840)
T KOG2003|consen 321 AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA 400 (840)
T ss_pred ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc
Confidence 6677777777777776643222 222222211 1111111 112222 1111122222111
Q ss_pred ---HHH------------------HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHH--HHHHHHHccCChHHHHHHHH
Q 005265 220 ---WNS------------------LITCYEQNGPASDALEVFVRMMASGIEPDEVTLA--SVVSACASLAAFKEGLQIHA 276 (705)
Q Consensus 220 ---~~~------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~ 276 (705)
|.. -...+.++|+++.|+++++-.....-+.-+..-+ +++..+....++..|.+.-+
T Consensus 401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 110 1123556666666666666655432221111111 12222222334455555444
Q ss_pred HHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHH
Q 005265 277 RLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNAL 356 (705)
Q Consensus 277 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 356 (705)
..+... .-+......-.+.-...|+++.|.+.|++....|...-.++.. +
T Consensus 481 ~aln~d--ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn----------------------------i 530 (840)
T KOG2003|consen 481 IALNID--RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN----------------------------I 530 (840)
T ss_pred HHhccc--ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH----------------------------h
Confidence 444332 1111111111122223455555555555444433332222221 1
Q ss_pred HHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHH
Q 005265 357 IAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMY 436 (705)
Q Consensus 357 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 436 (705)
...+-..|+.++|++.|-++... +..+...+..+.+.|....+...|.+++.+....- +.|+.+.+.|.+.|
T Consensus 531 glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sli-------p~dp~ilskl~dly 602 (840)
T KOG2003|consen 531 GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI-------PNDPAILSKLADLY 602 (840)
T ss_pred cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC-------CCCHHHHHHHHHHh
Confidence 22334455555555555443221 12233344445555555555555555554443322 45556666666666
Q ss_pred HhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh-ccCcHHHHH
Q 005265 437 MKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACS-HAGLVEEGR 512 (705)
Q Consensus 437 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~ 512 (705)
-+.|+-..|.+.+-.-- .-|+.+..-|...|....-+++++.+|++..- ++|+..-|..++..|. +.|++.+|.
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHH
Confidence 66666666655543222 22444444455555556666666666666554 5666666666555443 456666666
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 005265 513 KYFSSMSKEHGLAPLKDHYTCMVDLLGRAG 542 (705)
Q Consensus 513 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 542 (705)
.+++...++ ++.+..+..-|+..+...|
T Consensus 681 d~yk~~hrk--fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 681 DLYKDIHRK--FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHh--CccchHHHHHHHHHhcccc
Confidence 666666543 3445556666666655555
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.8e-15 Score=145.16 Aligned_cols=257 Identities=18% Similarity=0.158 Sum_probs=113.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHH-HHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHH
Q 005265 355 ALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGN-LLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLI 433 (705)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li 433 (705)
.+...+.+.|++++|++++++.......|+...|-. +...+...++.+.|...++.+...+. .++..+..++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-------~~~~~~~~l~ 85 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-------ANPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------cccccccccc
Confidence 346677788899999998866544432354444444 44455667888999999988887764 4667777888
Q ss_pred HHHHhcCCHHHHHHHHHccCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHhccCcHHH
Q 005265 434 DMYMKCGSVEDGCRIFETMVE--RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCG-EKPDHVTMIGVLCACSHAGLVEE 510 (705)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~ 510 (705)
.. ...+++++|.+++....+ ++...+..++..+...++++++.++++++.... ..++...|..+...+.+.|+.++
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred cc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 77 788999999999887643 466778888899999999999999999987643 33456678888888999999999
Q ss_pred HHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005265 511 GRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMP--MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLL 587 (705)
Q Consensus 511 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 587 (705)
|.+.+++..+. .|+ ......++..+...|+.+++.++++... .++|+..|..+..++...|+.++|...++++.
T Consensus 165 A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 165 ALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence 99999988764 565 7888999999999999999888887762 24466678899999999999999999999999
Q ss_pred hhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 588 EIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 588 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+..|+|+.....+++++...|+.++|.+++++...
T Consensus 242 ~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 242 KLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHSTT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999987653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-09 Score=104.60 Aligned_cols=542 Identities=14% Similarity=0.131 Sum_probs=337.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhC
Q 005265 87 TWNSIITGLLKWGFIDDASRLFASMPE---RDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAG 163 (705)
Q Consensus 87 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 163 (705)
.|-.....=-.++++..|..+|++... ++...|-.-+..-.++..+..|..++++....-+..|.. |--.+..--.
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~ 153 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHH
Confidence 333333333445667777777776654 455566666666677777777777777776543332322 2222222334
Q ss_pred CCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccC--CCCcchHHHHHHHHHhcCChhHHHHHHH
Q 005265 164 SVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMR--ERNIVSWNSLITCYEQNGPASDALEVFV 241 (705)
Q Consensus 164 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 241 (705)
.|++..|.++|+.-.+. .|+...|++.|+.=.+-..++.|..++++.. .|++.+|--....=.++|+...|..+|+
T Consensus 154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 57778888888877665 7788888888888888888888888888754 5888888777777778888888888887
Q ss_pred HHHHC-CC-CCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 005265 242 RMMAS-GI-EPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRND--LVLGNALVDMYAKCGKLNEARCVFDRMPIR 317 (705)
Q Consensus 242 ~m~~~-g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 317 (705)
...+. |- ..+...|++....=.+...++.|.-+|.-++.. ++.+ ...|..+...--+-|+.....+..-.
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~---- 305 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG---- 305 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhh----
Confidence 77652 10 111223333333334556777888888877776 3333 45565565555555665444322200
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHhcCCC---CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcch-------hh
Q 005265 318 NVVSETSMVSGYAKASSVKSARLMFTKMLER---NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTH-------YT 387 (705)
Q Consensus 318 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t 387 (705)
+-.--++.++.. |-.+|-..+..-...|+.+...++|++.... ++|-. ..
T Consensus 306 -------------------KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYI 365 (677)
T KOG1915|consen 306 -------------------KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYI 365 (677)
T ss_pred -------------------hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHH
Confidence 000112223332 4445666666666778888888888887754 45522 11
Q ss_pred HHHHHHHH---hhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHH----HhcCCHHHHHHHHHccC--CCChh
Q 005265 388 FGNLLNAC---ANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMY----MKCGSVEDGCRIFETMV--ERDWV 458 (705)
Q Consensus 388 ~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~--~~~~~ 458 (705)
|.-+--+| ....+.+.++++++..++.- +....++..+=-+| .++.++..|.+++.... -|-..
T Consensus 366 YLWinYalyeEle~ed~ertr~vyq~~l~lI-------PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K 438 (677)
T KOG1915|consen 366 YLWINYALYEELEAEDVERTRQVYQACLDLI-------PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK 438 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc-------CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh
Confidence 21111111 24568888999998888742 34445555444334 46788999999998876 35667
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 005265 459 SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDL 537 (705)
Q Consensus 459 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 537 (705)
++...|..-.+.++++....++++.++ ..|.. .+|......-...|+.+.|..+|.-++....+.-....|.+.|+-
T Consensus 439 lFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdF 516 (677)
T KOG1915|consen 439 LFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDF 516 (677)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhh
Confidence 788888888889999999999999998 56654 678887777788999999999999887654433345677777777
Q ss_pred HHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHhh----CCCCCc-
Q 005265 538 LGRAGCLDEAKTLIEAM-PMQPDAVIWGSLLAACK-----VHR-----------NIMLGEYVAKKLLEI----EPSNSG- 595 (705)
Q Consensus 538 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~~~- 595 (705)
=...|.++.|..++++. ...+-..+|-++...-. +.+ +...|..+|+++... .|....
T Consensus 517 Ei~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~ 596 (677)
T KOG1915|consen 517 EIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERL 596 (677)
T ss_pred hhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78899999999999987 44455557766655532 233 567889999998764 332221
Q ss_pred -hHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCccCCcee-EEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHHH
Q 005265 596 -PYVLLSNMYAELGRWGEVVRVRKLMRKR-----GVVKQPGCS-WIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMK 668 (705)
Q Consensus 596 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 668 (705)
.....-+.-...|...+...+-.+|++. .+..+.|.+ |-+. +..+...+.+.+...+++.....+.+++.
T Consensus 597 ~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKKrr~~~~edG~~~~EEy---~DYiFPed~~~~~~~K~LeaA~kWK~q~~ 673 (677)
T KOG1915|consen 597 MLLEAWKNMEETFGTEGDVERVQSKMPKKVKKRRKIQREDGDTEYEEY---FDYIFPEDASATKNLKILEAAKKWKKQKA 673 (677)
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHhccHHHHhhhhhhcccCchhHHHH---HHhcCccccccCcchHHHHHHHHHHHHHH
Confidence 1223333444556666666666666432 122233422 2211 11222334455666667776666665544
Q ss_pred H
Q 005265 669 R 669 (705)
Q Consensus 669 ~ 669 (705)
+
T Consensus 674 ~ 674 (677)
T KOG1915|consen 674 K 674 (677)
T ss_pred h
Confidence 3
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.9e-13 Score=134.01 Aligned_cols=246 Identities=14% Similarity=0.080 Sum_probs=113.1
Q ss_pred hHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHH
Q 005265 366 NEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDG 445 (705)
Q Consensus 366 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 445 (705)
..+|+..|..... .+.-+......+-.+|...+++++++.+|+.+.+...-. -.+..+|.+.+--+-+.=.+.--
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r----v~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR----VKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccchhHHHHHHHHHHhhHHHHHH
Confidence 3445555544222 122222334444445555555555555555554432210 12344444444322221111111
Q ss_pred HHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 005265 446 CRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGL 524 (705)
Q Consensus 446 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 524 (705)
.+-+-.+....+.+|-++.++|...++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+..+ ++
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~ 484 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GV 484 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cC
Confidence 1111111223445555555555555555555555555555 444 23345544444555555555555555332 22
Q ss_pred CCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 005265 525 APL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLS 601 (705)
Q Consensus 525 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 601 (705)
.|. -..|.-|.-.|.+.++++.|+-.|+++ .+.|. .+....+...+.+.|+.++|+.++++++.++|.++-.-...+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 222 222222334455555555555555555 44443 223333333355555555555555555555555555555555
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 005265 602 NMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 602 ~~~~~~g~~~~A~~~~~~~~ 621 (705)
.++...+++++|.+.+++++
T Consensus 565 ~il~~~~~~~eal~~LEeLk 584 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELK 584 (638)
T ss_pred HHHHhhcchHHHHHHHHHHH
Confidence 55555555555555555555
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-10 Score=114.37 Aligned_cols=261 Identities=12% Similarity=0.016 Sum_probs=210.6
Q ss_pred CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhH
Q 005265 349 NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFV 428 (705)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 428 (705)
++.....-..-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-..+++.- |....+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-------P~~a~s 314 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-------PSKALS 314 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-------CCCCcc
Confidence 33444445566778899999999999988764 4455555555667778888777666666777665 467788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhc
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVERD---WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSH 504 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~ 504 (705)
|-++.-.|...|+.++|++.|.+...-| ...|-.....|+-.|..++|+..+...-+ +-|.. ..+.-+.--|.+
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMR 392 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHH
Confidence 9999999999999999999999876433 45899999999999999999999988877 33332 234445556888
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-----C---CC-CHHHHHHHHHHHHhcC
Q 005265 505 AGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMP-----M---QP-DAVIWGSLLAACKVHR 574 (705)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~p-~~~~~~~l~~~~~~~g 574 (705)
.++.+.|.++|.+.. ++.|+ +.+.+-+.-..-..+.+.+|...|+..- + .+ -..+++.|..+|++.+
T Consensus 393 t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred hccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 999999999999775 67775 7888888888888999999999998761 1 11 3446888999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 575 NIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 575 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+++|+..+++++.+.|.++.+|..++-+|...|+++.|...|.+..-
T Consensus 470 ~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999874
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.7e-11 Score=113.42 Aligned_cols=328 Identities=12% Similarity=0.029 Sum_probs=240.2
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHH-HHHHHHHHc
Q 005265 285 RNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWN-ALIAGYTQN 363 (705)
Q Consensus 285 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~ 363 (705)
..|...+-...-.+-+.|..+.|+..|......-+..|.+-+....-..+.+.+..+...++..+...-. .+..++-..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 4444444444455666777888888877776655556665555444444444444444333333221111 234566666
Q ss_pred CChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHH
Q 005265 364 GENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVE 443 (705)
Q Consensus 364 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 443 (705)
.+.++++.-.......|+..+...-+....+.-...++++|..+|+++.+..+-. -.|..+|+.++-.--.+.++.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR----l~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR----LDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc----chhHHHHhHHHHHHhhhHHHH
Confidence 6888888888888888876665555555555667889999999999999875311 246677777663332222222
Q ss_pred -HHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 005265 444 -DGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKE 521 (705)
Q Consensus 444 -~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 521 (705)
-|..++ .+.+--+.|...+.+-|+-.++.+.|...|++.++ +.|.. ..|+.+..-|....+...|.+-++.+++
T Consensus 317 ~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd- 392 (559)
T KOG1155|consen 317 YLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD- 392 (559)
T ss_pred HHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh-
Confidence 122222 22233455667778889999999999999999999 67776 4777888889999999999999998874
Q ss_pred cCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 005265 522 HGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYV 598 (705)
Q Consensus 522 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 598 (705)
+.| |-..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|..+|.+.++.++|++.|.+++...--+..++.
T Consensus 393 --i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 393 --INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred --cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 455 5889999999999999999999999998 5666 7889999999999999999999999999998777778899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 005265 599 LLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 599 ~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.|+.+|.+.++.++|...+++-.+
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999988765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-11 Score=125.64 Aligned_cols=274 Identities=9% Similarity=0.046 Sum_probs=180.1
Q ss_pred CCHHHHHHHHHhcCCC--Ceeh-HHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHH--HHHHHHhhcccHHHHHHH
Q 005265 333 SSVKSARLMFTKMLER--NVVS-WNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFG--NLLNACANLADLQLGRQA 407 (705)
Q Consensus 333 ~~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~ 407 (705)
|+++.|++.+....+. ++.. |-.......+.|+++.|...+.++.+. .|+..... .....+...|+++.|...
T Consensus 98 Gd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555544332 1222 222234446777888888888777653 34443322 224566677788888888
Q ss_pred HHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCC---hh--------HHHHHHHHHHHcCChHHH
Q 005265 408 HTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERD---WV--------SWNAMIVGCAQNGYGTEA 476 (705)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~--------~~~~li~~~~~~g~~~~A 476 (705)
++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+.. .. +|..++.......+.+..
T Consensus 176 l~~~~~~~-------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 176 VDKLLEVA-------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHhcC-------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 87777766 3567777788888888888888887777776421 11 233333333344455556
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 005265 477 LGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-P 555 (705)
Q Consensus 477 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 555 (705)
.++++.+.+. .+.+......+..++...|+.++|.+++++..+. .|+.... ++.+....++.+++++.++.. .
T Consensus 249 ~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 249 KRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHh
Confidence 6666655432 3345567777888888888888888888877642 4444222 223333558888888888877 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 556 MQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 556 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
..| |+..+..+...|...+++++|.+.|+++++..|++.. +..|+.++.+.|+.++|.+++++-..
T Consensus 323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455 4555677777888899999999999999988888744 77889999999999999888887653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.2e-12 Score=128.30 Aligned_cols=275 Identities=15% Similarity=0.102 Sum_probs=219.2
Q ss_pred CHHHHHHHHHhcCCC--Ce-ehHHHHHHHHHHcCChHHHHHHHHHhhhCC--CCcchhhHHHHHHHHhhcccHHHHHHHH
Q 005265 334 SVKSARLMFTKMLER--NV-VSWNALIAGYTQNGENEEALGLFRLLKRES--VCPTHYTFGNLLNACANLADLQLGRQAH 408 (705)
Q Consensus 334 ~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 408 (705)
+..+|...|.++++. +. .....+..+|...+++++|.++|+...+.. ..-+..+|.+++--+-+.-.+ -.+-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~L---s~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVAL---SYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHH---HHHH
Confidence 457788888886542 32 344567889999999999999999988643 122556777766543322111 1122
Q ss_pred HHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005265 409 THVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERD---WVSWNAMIVGCAQNGYGTEALGLFKKMLL 485 (705)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 485 (705)
+.+++.. +..+.+|-++.++|.-+++.+.|++.|++..+-| ..+|+.+..=+.....+|.|...|+..+.
T Consensus 411 q~Li~~~-------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 411 QDLIDTD-------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHhhC-------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 3333433 5778999999999999999999999999998654 46788887788889999999999999887
Q ss_pred CCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHH
Q 005265 486 CGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAV 561 (705)
Q Consensus 486 ~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 561 (705)
+.|.. ..|-.+...|.+.++++.|.-.|+.+. .+.|. .....++...+.+.|+.++|+.+++++ ..+| |+.
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 66655 478888889999999999999999765 67786 777788889999999999999999998 4444 666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
.-..-+..+...+++++|...++++.++-|++..+|..++.+|-+.|+.+.|+.-|.-+.+.
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 66667777888999999999999999999999999999999999999999999998877653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-10 Score=116.59 Aligned_cols=531 Identities=12% Similarity=0.042 Sum_probs=294.2
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCC----ChhhHHHHHHHHHhcCChhHHHHHHhcCCCCC
Q 005265 40 RVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNK----NVFTWNSIITGLLKWGFIDDASRLFASMPERD 115 (705)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 115 (705)
.++..+...|+.|+..+|..+|.-|+..|+.+.|- +|.-|.-+ +...++.++.+..+.++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667888999999999999999999999999999 88887653 3467999999999999887765 788
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHH-hHh-------CCCCCChhhHHHHHHHhhCCCCcHH--------HHHHHHHHHH
Q 005265 116 QCSWNSMVSGFAQHDRFSEALGYFVK-MHS-------ENFALSEYSFGSALSACAGSVDFKM--------GTQVHALLSK 179 (705)
Q Consensus 116 ~~~~~~li~~~~~~~~~~~a~~~~~~-m~~-------~g~~p~~~~~~~ll~~~~~~~~~~~--------a~~~~~~~~~ 179 (705)
+.+|..|..+|..+|+... ++..++ |.. .|+..-..-|-..+. |+..-..+. -+.+++..++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~-c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIH-CCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcc-cCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998765 222222 221 222211111222222 221111111 1223344444
Q ss_pred cCC-CCChhhHHHH---HHHhh-cCCChHHHHHHHhccCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh
Q 005265 180 SRY-SSDVYMGSAL---IDMYG-KCGRVSCARRVFDGMRE-RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEV 253 (705)
Q Consensus 180 ~g~-~~~~~~~~~l---i~~~~-~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 253 (705)
.+. .|....++.. +.-.. -...+++-........+ ++..+|.+++..-..+|+.+.|..++.+|++.|+..+.+
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 331 1211111111 11111 12234444444444444 889999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcC
Q 005265 254 TLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKAS 333 (705)
Q Consensus 254 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 333 (705)
-|..++-+ .++...+..+++-|.+.| +.|+..|+.-.+-.+..+|....+.. ..+....+++-+..-.-.|
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~g-v~p~seT~adyvip~l~N~~t~~~~e-----~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKG-VQPGSETQADYVIPQLSNGQTKYGEE-----GSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhc-CCCCcchhHHHHHhhhcchhhhhccc-----ccchhhhhhHHHHHHHhcc
Confidence 88888766 778888888888888888 99999998887777777555322221 1122222222222222222
Q ss_pred CHHHHHHHHHhc---------C-------CCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhh
Q 005265 334 SVKSARLMFTKM---------L-------ERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACAN 397 (705)
Q Consensus 334 ~~~~A~~~~~~~---------~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 397 (705)
..|.+.++.- . ......|. ++.-...+|+-++...+...|..- ....-..-++++
T Consensus 312 --~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~np----t~r~s~~~V~a~-- 382 (1088)
T KOG4318|consen 312 --LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNP----TLRDSGQNVDAF-- 382 (1088)
T ss_pred --cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCC----ccccCcchHHHH--
Confidence 1111111111 0 01111121 111222234444444444433311 000000000000
Q ss_pred cccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHH--HHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHH
Q 005265 398 LADLQLGRQAHTHVVKHGLRFLSGEESDIFVGN--SLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTE 475 (705)
Q Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 475 (705)
.....+.|.++.... ...+++ ..+..........+..++.... .||.
T Consensus 383 ---~~~lrqyFrr~e~~~---------~~~i~~~~qgls~~l~se~tp~vsell~~l-rkns------------------ 431 (1088)
T KOG4318|consen 383 ---GALLRQYFRRIERHI---------CSRIYYAGQGLSLNLNSEDTPRVSELLENL-RKNS------------------ 431 (1088)
T ss_pred ---HHHHHHHHHHHHhhH---------HHHHHHHHHHHHhhhchhhhHHHHHHHHHh-Ccch------------------
Confidence 111233333333211 111111 1111111111122222222221 1111
Q ss_pred HHHHHHHHHH----CCCCC-------ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh
Q 005265 476 ALGLFKKMLL----CGEKP-------DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCL 544 (705)
Q Consensus 476 A~~~~~~m~~----~g~~p-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 544 (705)
+.+-+..+.. .-..| =...-+.++..|.+.-+..+++..-+.. +..-+ ...|..||+.+.+....
T Consensus 432 ~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky-e~~lf---~g~ya~Li~l~~~hdkl 507 (1088)
T KOG4318|consen 432 FLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY-EDLLF---AGLYALLIKLMDLHDKL 507 (1088)
T ss_pred HHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh---hhHHHHHhhhHHHHHHH
Confidence 1111111000 00111 0112344555565555555555443333 22111 25789999999999999
Q ss_pred HHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCCCchHHHHHHHHHhcCChhHHHHH
Q 005265 545 DEAKTLIEAMP-----MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEI---EPSNSGPYVLLSNMYAELGRWGEVVRV 616 (705)
Q Consensus 545 ~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~ 616 (705)
++|..+.++.. ..-|..-+..+.+...+.+....+..+++++.+. .|........+.+.....|+.+.-.++
T Consensus 508 e~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl 587 (1088)
T KOG4318|consen 508 EYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKL 587 (1088)
T ss_pred HHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHH
Confidence 99999998873 3345667778888888889888888888888764 344445566777777888999999999
Q ss_pred HHHHHhCCCccCCceeEE
Q 005265 617 RKLMRKRGVVKQPGCSWI 634 (705)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~ 634 (705)
.+-+...|+.. .|.-|.
T Consensus 588 ~d~lvslgl~e-tgPl~~ 604 (1088)
T KOG4318|consen 588 ADILVSLGLSE-TGPLWM 604 (1088)
T ss_pred HHHHHHhhhhh-cccceE
Confidence 88888888765 454443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.9e-09 Score=102.69 Aligned_cols=284 Identities=14% Similarity=0.146 Sum_probs=178.3
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhcCCCCee-------hHHHHHHHHHHcCChHHHHHHHHHhhhCCCC----------
Q 005265 320 VSETSMVSGYAKASSVKSARLMFTKMLERNVV-------SWNALIAGYTQNGENEEALGLFRLLKRESVC---------- 382 (705)
Q Consensus 320 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---------- 382 (705)
..|..+.+-|-..|+++.|+.+|++..+-+-. +|-.-...-.+..+++.|+++.+.....--.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 35777788888889999999999888664333 3444444445667788888877766532111
Q ss_pred c-------chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC-
Q 005265 383 P-------THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE- 454 (705)
Q Consensus 383 p-------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 454 (705)
| +...|...++.-...|-++..+.+++.+++..+ .++.+.-...-.+-...-++++.+++++-..
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-------aTPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-------ATPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 1 112233344444566788888999999998887 3444433444445556678999999998652
Q ss_pred ---CCh-hHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChhhHHHHH--HHHhccCcHHHHHHHHHHhHHhcCCC
Q 005265 455 ---RDW-VSWNAMIVGCAQ---NGYGTEALGLFKKMLLCGEKPDHVTMIGVL--CACSHAGLVEEGRKYFSSMSKEHGLA 525 (705)
Q Consensus 455 ---~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~~~~~ 525 (705)
|++ ..|+..+.-+.+ ..+.+.|..+|++.++ |.+|...-+..++ ..-..-|....|+.+++++.. +++
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~ 617 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVK 617 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCC
Confidence 444 367777666554 3468999999999999 6776654222222 222346888999999998754 455
Q ss_pred CC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHhh-CCC-CCchH
Q 005265 526 PL--KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIWGSLL---AACKVHRNIMLGEYVAKKLLEI-EPS-NSGPY 597 (705)
Q Consensus 526 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~-~p~-~~~~~ 597 (705)
+. ...|+..|.--...=-...-..+|+++ ..-||..+-...+ ..-.+.|..+.|..+|...-++ +|. +...|
T Consensus 618 ~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW 697 (835)
T KOG2047|consen 618 EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFW 697 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHH
Confidence 54 556776664332222222233444444 2345544333222 2346789999999999988887 454 33456
Q ss_pred HHHHHHHHhcCChhHH
Q 005265 598 VLLSNMYAELGRWGEV 613 (705)
Q Consensus 598 ~~l~~~~~~~g~~~~A 613 (705)
...-..=.+.|+-+--
T Consensus 698 ~twk~FEvrHGnedT~ 713 (835)
T KOG2047|consen 698 DTWKEFEVRHGNEDTY 713 (835)
T ss_pred HHHHHHHHhcCCHHHH
Confidence 6777777788884433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.1e-09 Score=101.52 Aligned_cols=459 Identities=12% Similarity=0.098 Sum_probs=315.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 005265 119 WNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGK 198 (705)
Q Consensus 119 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 198 (705)
|---..--..+++...|.++|++.+.... -+...|.--+..-.+...+..|..+++..+..-+..|..- -..+.+=-.
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW-yKY~ymEE~ 153 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW-YKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH-HHHHHHHHH
Confidence 33333334456778889999998887542 3555666666667788888889999998887643334333 334444456
Q ss_pred CCChHHHHHHHhccC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHH
Q 005265 199 CGRVSCARRVFDGMR--ERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHA 276 (705)
Q Consensus 199 ~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 276 (705)
.|++..|..+|++-. +|+..+|++.|..=.+.+..+.|..+|++..- +.|+..+|.--...=-+.|....+..+|.
T Consensus 154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 688899999998765 48888999999988888999999999988876 55888888777777778888888888888
Q ss_pred HHHHcCCC-CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCC-eehHH
Q 005265 277 RLMRCEKL-RNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERN-VVSWN 354 (705)
Q Consensus 277 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 354 (705)
.+++.-+- ..+...+.+....-.++..++.|.-+|+- .++.+++.. ...|.
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyky---------------------------Ald~~pk~raeeL~k 284 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKY---------------------------ALDHIPKGRAEELYK 284 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHhcCcccHHHHHH
Confidence 88775211 11233445555555556666666655542 122222211 11222
Q ss_pred HHHHHHHHcCCh---HHHHHH-----HHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcH
Q 005265 355 ALIAGYTQNGEN---EEALGL-----FRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDI 426 (705)
Q Consensus 355 ~li~~~~~~g~~---~~A~~~-----~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 426 (705)
.+...--+-|+. ++++-- |+.+++.+ +-|..++--.+..-...|+.+...++++.++..-. +.+.
T Consensus 285 ~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvp------p~~e 357 (677)
T KOG1915|consen 285 KYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVP------PASE 357 (677)
T ss_pred HHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCC------chhH
Confidence 222222233433 333322 33344332 34666776777777788999999999999987654 2111
Q ss_pred -hHHHHHHHH-----H---HhcCCHHHHHHHHHccCC---CChhH----HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 005265 427 -FVGNSLIDM-----Y---MKCGSVEDGCRIFETMVE---RDWVS----WNAMIVGCAQNGYGTEALGLFKKMLLCGEKP 490 (705)
Q Consensus 427 -~~~~~li~~-----~---~~~g~~~~A~~~~~~~~~---~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 490 (705)
..|...|-. + ....+++.+.++|+...+ ....| |-....--.++.+...|.+++...+. ..|
T Consensus 358 kr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cP 435 (677)
T KOG1915|consen 358 KRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCP 435 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCC
Confidence 222222211 1 246788999999876643 23333 44444555678899999999988765 789
Q ss_pred ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCC----CHHHHHH
Q 005265 491 DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMPMQP----DAVIWGS 565 (705)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~ 565 (705)
-..+|...|..-.+.+.++....+++... ...|. ..+|......=...|+.+.|..+|+-+-.+| -...|.+
T Consensus 436 K~KlFk~YIelElqL~efDRcRkLYEkfl---e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka 512 (677)
T KOG1915|consen 436 KDKLFKGYIELELQLREFDRCRKLYEKFL---EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA 512 (677)
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHH---hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 99999999999999999999999999886 34565 7788888888889999999999999884455 3567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH-----hcC-----------ChhHHHHHHHHHH
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA-----ELG-----------RWGEVVRVRKLMR 621 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~ 621 (705)
.|+.-...|.++.|..+|+++++..+... +|...+..-. +.| +...|.++|+...
T Consensus 513 YIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 513 YIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred hhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 88888899999999999999999877654 6777776655 445 6667888887764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-10 Score=108.57 Aligned_cols=356 Identities=13% Similarity=0.102 Sum_probs=204.7
Q ss_pred CCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHH--HHH
Q 005265 181 RYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTL--ASV 258 (705)
Q Consensus 181 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~l 258 (705)
+...|...+-...-.+.+.|....|+..|......-+..|.+.+....-.-+.+.+..+ . .|...|...+ -.+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~-~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----V-VGLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----H-hcCcccchHHHHHHH
Confidence 33445554444445566778888888888877665555555554433322222222211 1 1222222211 123
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCC------cccHHHHHHHHHhc
Q 005265 259 VSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRN------VVSETSMVSGYAKA 332 (705)
Q Consensus 259 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~ 332 (705)
..++-.....+++.+-.......| ++.+...-+....+.....+++.|+.+|+++...| ..+|+.++-.--.+
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 445555667777877777777777 77777766667777777888888888888877543 34444443322222
Q ss_pred CCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHH
Q 005265 333 SSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVV 412 (705)
Q Consensus 333 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 412 (705)
.++.--....-.+.+-.+.|..++..-|.-.++.++|...|++.++.+ +-....++.+-.-|....+...|.+.++.++
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 222111111112222234455556666777777777777777777643 1223345555556666667777777777777
Q ss_pred HhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 005265 413 KHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEK 489 (705)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 489 (705)
+.+ +.|-..|-.|.++|.-.+.+.-|+-.|++.. ..|...|.+|..+|.+.++.++|++.|.+....|-.
T Consensus 392 di~-------p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 392 DIN-------PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred hcC-------chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 665 3566777777777777777777777776654 236667777777777777777777777776665422
Q ss_pred CChhhHHHHHHHHhccCcHHHHHHHHHHhHHhc---C-CCCC-hhHHHHHHHHHHhcCChHHHHHHH
Q 005265 490 PDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEH---G-LAPL-KDHYTCMVDLLGRAGCLDEAKTLI 551 (705)
Q Consensus 490 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 551 (705)
+...+..+...+-+.++..+|...|+.-++.. | +.|. .....-|..-+.+.+++++|....
T Consensus 465 -e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 465 -EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred -chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 44566667777777777777776666554421 1 1221 222222444455666666655443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-10 Score=117.26 Aligned_cols=145 Identities=12% Similarity=-0.029 Sum_probs=93.6
Q ss_pred HHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH---HHHHHHHhccCcHHHHHHHHH
Q 005265 443 EDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTM---IGVLCACSHAGLVEEGRKYFS 516 (705)
Q Consensus 443 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~ 516 (705)
+...+.++..+. .+...+..+...+...|+.++|.+++++..+ ..||.... ..........++.+.+.+.++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 344444555543 3777888888888889999999999998888 44555421 111122234567777777777
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 517 SMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEA--M-PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 517 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+..
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6665422222214556777777777777777777773 2 45677777767777777777777777777776553
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.3e-11 Score=120.29 Aligned_cols=287 Identities=15% Similarity=0.046 Sum_probs=180.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHH--HHHHHHHhcCChHHH
Q 005265 230 NGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGN--ALVDMYAKCGKLNEA 307 (705)
Q Consensus 230 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A 307 (705)
.|+++.|.+.+....+.+-.| ...|.....+..+.|+++.+...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466676666665544321111 122322333445667777777777766653 34433222 234566666777777
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhh
Q 005265 308 RCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYT 387 (705)
Q Consensus 308 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 387 (705)
...++++.+ ....++.....+...|.+.|++++|..++..+.+.+..++. .
T Consensus 173 l~~l~~~~~----------------------------~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~ 223 (398)
T PRK10747 173 RHGVDKLLE----------------------------VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-H 223 (398)
T ss_pred HHHHHHHHh----------------------------cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-H
Confidence 654433221 11234556677778888888888888888888877644322 1
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHH
Q 005265 388 FGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMI 464 (705)
Q Consensus 388 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 464 (705)
+..+- ..+|..++.......+.+...++++..+ ..++.....+.
T Consensus 224 ~~~l~---------------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A 270 (398)
T PRK10747 224 RAMLE---------------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMA 270 (398)
T ss_pred HHHHH---------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHH
Confidence 11000 0111122222222233444555555554 23667777788
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC
Q 005265 465 VGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGC 543 (705)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 543 (705)
.++...|+.++|.+++++..+ ..||... .++.+....++.+++.+..+...+. .|+ +..+.++...+.+.|+
T Consensus 271 ~~l~~~g~~~~A~~~L~~~l~--~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~ 343 (398)
T PRK10747 271 EHLIECDDHDTAQQIILDGLK--RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGE 343 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHh--cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCC
Confidence 888888888888888888887 3444422 1233444558888888888888764 344 6678888889999999
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 544 LDEAKTLIEAM-PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 544 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
+++|.+.|+.. ...|+...+..+...+.+.|+.++|.+++++.+.+
T Consensus 344 ~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 344 WQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999887 66788888888888899999999999999988775
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-09 Score=107.49 Aligned_cols=503 Identities=14% Similarity=0.053 Sum_probs=271.6
Q ss_pred CchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhc--cCCCChhhHHHHHHHH
Q 005265 18 DSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDK--MSNKNVFTWNSIITGL 95 (705)
Q Consensus 18 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~ 95 (705)
+..-|..+++-+..+.++..|.-+-++....+..|+-. --+.+++.-.|.++.|..+... +.+.|..+......++
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~--~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADI--YWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCL 92 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH--HHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 44556667777777778888888888877666444443 3477888888888888877654 4457777777778888
Q ss_pred HhcCChhHHHHHHhcCCC-CCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHH
Q 005265 96 LKWGFIDDASRLFASMPE-RDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVH 174 (705)
Q Consensus 96 ~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 174 (705)
.+..++++|..++..-+. .++..|-.-=. ...-..+.+. ++. ++...+..+-.--..+....+.++|+..+
T Consensus 93 ~~lk~~~~al~vl~~~~~~~~~f~yy~~~~--~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ar~~Y 164 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHVETNPFSYYEKDA--ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNREEARDKY 164 (611)
T ss_pred HHHHHHHHHHHHhcccchhhcchhhcchhh--hceeccCccc----ccc--cccchhceeeeeeehhhhhccHHHHHHHH
Confidence 888888888888874321 01111100000 0000000000 000 11111111111222344445566666666
Q ss_pred HHHHHcCCCCChhhHHHHHHHhhcC-CChHHHHHHHhccC-----CCCcchHHHHHHHH-HhcCChhHHHHHHHHHHHCC
Q 005265 175 ALLSKSRYSSDVYMGSALIDMYGKC-GRVSCARRVFDGMR-----ERNIVSWNSLITCY-EQNGPASDALEVFVRMMASG 247 (705)
Q Consensus 175 ~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~-----~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g 247 (705)
.+.+.. |...+.++...-... -..++-..+|+... ..++.....+.... ++..+ +.....-.+-.-.|
T Consensus 165 ~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~~~sl~~ 239 (611)
T KOG1173|consen 165 KEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRNEDESLIG 239 (611)
T ss_pred HHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccCchhhhhh
Confidence 666554 333333332211110 01112222332211 01111111111111 00000 00000000011123
Q ss_pred CCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcccHHH
Q 005265 248 IEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMP---IRNVVSETS 324 (705)
Q Consensus 248 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 324 (705)
..-+.........-|...+++.+...+.+.+++.. ++....+..-|.++...|+...-..+=.++. .....+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhh
Confidence 34455555566666777788888888888888874 5555555555667777777665554444444 235677888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCe---ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccH
Q 005265 325 MVSGYAKASSVKSARLMFTKMLERNV---VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADL 401 (705)
Q Consensus 325 li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 401 (705)
+.--|...|+..+|++.|.+...-|. ..|-.+...|+-.|..++|+..|...-+. ++-..-.+--+---|.+.+++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 87777777888888888888755433 46888888999999999998888766542 111111122223345666777
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 005265 402 QLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFK 481 (705)
Q Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 481 (705)
+.|.+.|.++.... +.|+.+.+-+.-.....+.+.+|..+|+....+ .+
T Consensus 397 kLAe~Ff~~A~ai~-------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~------------------------ik 445 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV------------------------IK 445 (611)
T ss_pred HHHHHHHHHHHhcC-------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH------------------------hh
Confidence 77777777766655 356666666665555556666666665543210 00
Q ss_pred HHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 005265 482 KMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDA 560 (705)
Q Consensus 482 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 560 (705)
..... ..--..+++.+..+|.+.+.+++|+..++..... .+-+..++.++.-.|...|+++.|.+.|.+. .+.||.
T Consensus 446 ~~~~e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 446 SVLNE-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred hcccc-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 00000 0011234566666666666777777666665432 2334666667777777777777777777665 566766
Q ss_pred HHHHHHHHHHHh
Q 005265 561 VIWGSLLAACKV 572 (705)
Q Consensus 561 ~~~~~l~~~~~~ 572 (705)
.+...+++.+..
T Consensus 523 ~~~~~lL~~aie 534 (611)
T KOG1173|consen 523 IFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHHH
Confidence 666666655443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7e-08 Score=96.81 Aligned_cols=506 Identities=13% Similarity=0.155 Sum_probs=287.2
Q ss_pred hhHHHHHHHHHccCChhhHHHHHhccCC-----CChhhHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhC
Q 005265 55 FIQNRLIDVYAKCGCLYGARKVFDKMSN-----KNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQH 129 (705)
Q Consensus 55 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 129 (705)
.+|-.-+..+.++|++...+..|+.... .....|...|...-..|-++.+.+++++..+-++..-+.-|..+++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3455666667777777777777776543 23345777777777777777777777777766666667777777777
Q ss_pred CChHHHHHHHHHhHhCC------CCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCC--CCCh--hhHHHHHHHhhcC
Q 005265 130 DRFSEALGYFVKMHSEN------FALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRY--SSDV--YMGSALIDMYGKC 199 (705)
Q Consensus 130 ~~~~~a~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~--~~~~~li~~~~~~ 199 (705)
+++++|-+.+....... -+.+...|..+-...++..+.-....+ +.+++.|+ -+|. ..|++|.+-|.+.
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 77777777776654321 123444555555544444333222221 22222222 2332 4567777777777
Q ss_pred CChHHHHHHHhccCC--CCcchHHHHHHHHH----------------hcCC------hhHHHHHHHHHHHCCC-------
Q 005265 200 GRVSCARRVFDGMRE--RNIVSWNSLITCYE----------------QNGP------ASDALEVFVRMMASGI------- 248 (705)
Q Consensus 200 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~----------------~~g~------~~~A~~~~~~m~~~g~------- 248 (705)
|.+++|..+|++... -.+.-|+.+-++|+ ..|+ ++-.+.-|+.+...+.
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 777777777766543 11222222222221 1111 2233334444443221
Q ss_pred ---CC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCC------hhHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 005265 249 ---EP-DEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRND------LVLGNALVDMYAKCGKLNEARCVFDRMPIRN 318 (705)
Q Consensus 249 ---~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 318 (705)
.| +..+|..-+. ...|+..+-...|.++++. +.|. ...|..+.+.|-..|+++.|+.+|++...-+
T Consensus 342 LRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 11 1222322222 2346666777777777765 2332 2356777778888888888888887776543
Q ss_pred ccc-------HHHHHHHHHhcCCHHHHHHHHHhcCC---------------------CCeehHHHHHHHHHHcCChHHHH
Q 005265 319 VVS-------ETSMVSGYAKASSVKSARLMFTKMLE---------------------RNVVSWNALIAGYTQNGENEEAL 370 (705)
Q Consensus 319 ~~~-------~~~li~~~~~~~~~~~A~~~~~~~~~---------------------~~~~~~~~li~~~~~~g~~~~A~ 370 (705)
-.+ |......-.+..+++.|.++.+.... ++...|...+..--..|-++...
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 333 33333344455667777777766511 13345666666666677788888
Q ss_pred HHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcH-hHHHHHHHHHHh---cCCHHHHH
Q 005265 371 GLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDI-FVGNSLIDMYMK---CGSVEDGC 446 (705)
Q Consensus 371 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~ 446 (705)
.+|+++.+..+.......|- ..-+....-++++.++++.-+..-. .|++ .+|+..+.-+.+ .-+++.|.
T Consensus 498 ~vYdriidLriaTPqii~Ny-AmfLEeh~yfeesFk~YErgI~LFk------~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 498 AVYDRIIDLRIATPQIIINY-AMFLEEHKYFEESFKAYERGISLFK------WPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHH-HHHHHhhHHHHHHHHHHHcCCccCC------CccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 88888887664332222221 1122344556777777766555443 4554 566665554443 23688888
Q ss_pred HHHHccCC--C--ChhH-HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhccCcHHHHHHHHHHhH
Q 005265 447 RIFETMVE--R--DWVS-WNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH--VTMIGVLCACSHAGLVEEGRKYFSSMS 519 (705)
Q Consensus 447 ~~~~~~~~--~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~ 519 (705)
.+|++..+ | +..+ |-.....--..|-...|+.++++.... +++.. ..|+..|.-.+..--+...+.+|++.+
T Consensus 571 dLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaI 649 (835)
T KOG2047|consen 571 DLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAI 649 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 88887653 2 2222 222222223467778888888886553 55554 367777765555444556667777666
Q ss_pred HhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCH
Q 005265 520 KEHGLAPLKDH---YTCMVDLLGRAGCLDEAKTLIEAMP--MQP--DAVIWGSLLAACKVHRNI 576 (705)
Q Consensus 520 ~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~p--~~~~~~~l~~~~~~~g~~ 576 (705)
+. -|+... .--..++=++.|..+.|..++.-.. ..| +..-|.+.-..-.+||+-
T Consensus 650 e~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 650 ES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred Hh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 54 354332 2334456678888888888887662 233 566777777777888883
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.6e-10 Score=116.70 Aligned_cols=278 Identities=10% Similarity=0.033 Sum_probs=186.5
Q ss_pred cCCHHHHHHHHHhcCC--CCe-ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchh--hHHHHHHHHhhcccHHHHHH
Q 005265 332 ASSVKSARLMFTKMLE--RNV-VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHY--TFGNLLNACANLADLQLGRQ 406 (705)
Q Consensus 332 ~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~ 406 (705)
.|+++.|.+.+.+..+ |++ ..+-....+..+.|+++.|...+.+..+.. |+.. .-......+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555433 222 223334456667788888888888776542 4432 22233566677788888888
Q ss_pred HHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHH----HHHHHHHHcCChHHHHHH
Q 005265 407 AHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER---DWVSWN----AMIVGCAQNGYGTEALGL 479 (705)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~ 479 (705)
.++.+.+.. +.++.+...+...|...|++++|.+.+....+. +...+. ....++...+..+++.+.
T Consensus 175 ~l~~l~~~~-------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 175 GVDKLLEMA-------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHhC-------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 888888776 356677888888888888888888888877643 222221 111122333333444455
Q ss_pred HHHHHHCCC---CCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHh
Q 005265 480 FKKMLLCGE---KPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDH---YTCMVDLLGRAGCLDEAKTLIEA 553 (705)
Q Consensus 480 ~~~m~~~g~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~ 553 (705)
+..+.+... +.+...+..+...+...|+.++|.+.+++..+. .|+... .....-.....++.+.+.+.+++
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 655555321 126677888889999999999999999988764 455331 11122223345788888888877
Q ss_pred C-CCCCC-H--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 554 M-PMQPD-A--VIWGSLLAACKVHRNIMLGEYVAK--KLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 554 ~-~~~p~-~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
. ...|+ + ....++...|.+.|++++|.+.|+ .+.+..|++.. +..++.++.+.|+.++|.+++++...
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6 34454 3 566788888999999999999999 57778887755 77999999999999999999998643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-12 Score=125.95 Aligned_cols=259 Identities=15% Similarity=0.098 Sum_probs=99.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHH-HHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcC
Q 005265 121 SMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFG-SALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKC 199 (705)
Q Consensus 121 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 199 (705)
.+...+.+.|++++|+++++.......+|+...|- .+...+...++.+.|...++.+...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34556677788888888886554443234444443 3444555677888888888888776544 55566677766 688
Q ss_pred CChHHHHHHHhccCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHccCChHHHHHHHH
Q 005265 200 GRVSCARRVFDGMRE--RNIVSWNSLITCYEQNGPASDALEVFVRMMASG-IEPDEVTLASVVSACASLAAFKEGLQIHA 276 (705)
Q Consensus 200 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 276 (705)
+++++|.++++..-+ ++...+..++..+.+.++++++.++++...... ..++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888876533 566677788888888899999999988876533 34566677777788888899999999999
Q ss_pred HHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHH
Q 005265 277 RLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNAL 356 (705)
Q Consensus 277 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 356 (705)
++++.. |.|..+.+.++..+...|+.+++..++. .+......|+..|..+
T Consensus 171 ~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~----------------------------~~~~~~~~~~~~~~~l 220 (280)
T PF13429_consen 171 KALELD--PDDPDARNALAWLLIDMGDYDEAREALK----------------------------RLLKAAPDDPDLWDAL 220 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHH----------------------------HHHHH-HTSCCHCHHH
T ss_pred HHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHH----------------------------HHHHHCcCHHHHHHHH
Confidence 998864 5567788888888888888888775553 2222234566677777
Q ss_pred HHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHH
Q 005265 357 IAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVV 412 (705)
Q Consensus 357 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 412 (705)
..+|...|++++|+.+|++..+.. +.|..+...+..++...|+.+.|.++...+.
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 778888888888888888777643 3466677777777788888888777766554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-09 Score=103.88 Aligned_cols=217 Identities=10% Similarity=-0.018 Sum_probs=173.1
Q ss_pred HHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhc
Q 005265 360 YTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKC 439 (705)
Q Consensus 360 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 439 (705)
+.-.|+.-.|...|+..+.....++.. |.-+...|....+.++....|..+.+.+ +.++.+|..-.+++.-.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-------p~n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-------PENPDVYYHRGQMRFLL 407 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-------CCCCchhHhHHHHHHHH
Confidence 445788889999999998865444432 6667778899999999999999999988 46788888888999999
Q ss_pred CCHHHHHHHHHccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHH
Q 005265 440 GSVEDGCRIFETMVER---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFS 516 (705)
Q Consensus 440 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 516 (705)
+++++|..-|++...- ++..|-.+.-+..+.+++++++..|++..+. ++--...|+.....+...++++.|.+.|+
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 9999999999988743 5567777777777889999999999999985 43345689999999999999999999999
Q ss_pred HhHHhcCCCCC---------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005265 517 SMSKEHGLAPL---------KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKK 585 (705)
Q Consensus 517 ~~~~~~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (705)
.... +.|+ +.+--+++..-. .+++..|.+++++. .+.|. ...+.+|...-.++|+.++|+++|++
T Consensus 487 ~ai~---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 487 KAIE---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHh---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8763 3444 222223332223 38999999999988 66774 55788888889999999999999999
Q ss_pred HHhh
Q 005265 586 LLEI 589 (705)
Q Consensus 586 ~~~~ 589 (705)
...+
T Consensus 563 sa~l 566 (606)
T KOG0547|consen 563 SAQL 566 (606)
T ss_pred HHHH
Confidence 8876
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-09 Score=99.62 Aligned_cols=217 Identities=15% Similarity=0.193 Sum_probs=112.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCh--hHHHHHHHHHHhcCChHHH
Q 005265 230 NGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDL--VLGNALVDMYAKCGKLNEA 307 (705)
Q Consensus 230 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A 307 (705)
+.+.++|.++|-+|.+.. +-+..+-.++-+.+-+.|..+.|+++|..++++.++..+. .....|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567788888888887631 1223344556666777778888888887777654232221 2333455556666666666
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCe---ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcc
Q 005265 308 RCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNV---VSWNALIAGYTQNGENEEALGLFRLLKRESVCPT 384 (705)
Q Consensus 308 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 384 (705)
+.+| ..+.+.+. .+...|+..|-...+|++|+++-+++.+.+-.+.
T Consensus 127 E~~f-------------------------------~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 127 EDIF-------------------------------NQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred HHHH-------------------------------HHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 6444 44433222 2344566777777777777777777766554333
Q ss_pred hh----hHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChh--
Q 005265 385 HY----TFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWV-- 458 (705)
Q Consensus 385 ~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-- 458 (705)
.+ .|.-+........+++.|...+.+..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|+.
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQAD-------KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-------ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence 21 12222333333344555555555555444 233333334444444445555555444444433322
Q ss_pred --HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005265 459 --SWNAMIVGCAQNGYGTEALGLFKKMLL 485 (705)
Q Consensus 459 --~~~~li~~~~~~g~~~~A~~~~~~m~~ 485 (705)
+...|..+|.+.|+.++....+.++.+
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 233344444444444444444444444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.2e-09 Score=100.67 Aligned_cols=290 Identities=15% Similarity=0.072 Sum_probs=195.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 005265 230 NGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARC 309 (705)
Q Consensus 230 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 309 (705)
.|++.+|.++..+-.+.+-.|- ..|.....+.-..|+.+.+-.++.++-+.. -.++..+.-+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHH
Confidence 5777777777777666553332 345555666667788888888887777753 24555666666777777777777774
Q ss_pred HHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHH
Q 005265 310 VFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFG 389 (705)
Q Consensus 310 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 389 (705)
-+. -+.+|...++........+|.+.|++.....++..|.+.|+-.++..-
T Consensus 175 ~v~----------------------------~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~- 225 (400)
T COG3071 175 NVD----------------------------QLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA- 225 (400)
T ss_pred HHH----------------------------HHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-
Confidence 432 222333456666777888888899999999999888888754443210
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHH
Q 005265 390 NLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVG 466 (705)
Q Consensus 390 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 466 (705)
.....+++.+++-....+..+.-...++..+ +.++..-.+++.-
T Consensus 226 ---------------------------------~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~ 272 (400)
T COG3071 226 ---------------------------------RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAER 272 (400)
T ss_pred ---------------------------------HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHH
Confidence 0111233333433333333333344455544 2356666667777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDE 546 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 546 (705)
+.+.|+.++|.++..+..+.+..|+ ...+-.+.+.++...-++..+...+.++..| ..+.+|...|.+.+.|.+
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGK 346 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHH
Confidence 7888888888888888888777776 2233356677777777777777766654444 678888888888888888
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 547 AKTLIEAM-PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 547 A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
|.+.|+.. +..|+..+|+-+..++-+.|+..+|.++.++.+-.
T Consensus 347 A~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 347 ASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88888876 67788888888888888888888888888887754
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.4e-10 Score=106.76 Aligned_cols=198 Identities=13% Similarity=0.079 Sum_probs=166.6
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 005265 424 SDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLC 500 (705)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 500 (705)
.....+..+...|...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 4467788889999999999999999998753 356788889999999999999999999999842 223457777888
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIML 578 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 578 (705)
.+...|++++|.+.++..............+..+...+...|++++|...+++. ...| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 899999999999999998754222233567788889999999999999999987 3344 46678888888999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 579 GEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 579 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
|...++++++..|+++..+..++.++...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888888888999999999999999999888764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.2e-10 Score=112.92 Aligned_cols=236 Identities=15% Similarity=0.117 Sum_probs=174.8
Q ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHHccCC-------C--
Q 005265 386 YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIF-VGNSLIDMYMKCGSVEDGCRIFETMVE-------R-- 455 (705)
Q Consensus 386 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~-------~-- 455 (705)
.|...+...|...|+++.|..++...++.-....+...|.+. ..+.+...|...+++.+|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 455556677777777777777777666541000000123333 334577899999999999999988752 1
Q ss_pred --ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-----CCCCC-hh-hHHHHHHHHhccCcHHHHHHHHHHhHHhcC--C
Q 005265 456 --DWVSWNAMIVGCAQNGYGTEALGLFKKMLLC-----GEKPD-HV-TMIGVLCACSHAGLVEEGRKYFSSMSKEHG--L 524 (705)
Q Consensus 456 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~ 524 (705)
-..+++.|..+|.+.|++++|...+++..+- |..+. .. .++.+...|...+.+++|..+++...+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2347888888999999999999888886651 22222 22 467777789999999999999987765543 2
Q ss_pred CCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-------C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-
Q 005265 525 APL----KDHYTCMVDLLGRAGCLDEAKTLIEAM-------P--MQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEI- 589 (705)
Q Consensus 525 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~--~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 589 (705)
.++ ..+++.|...|.+.|++++|.++++++ . ..+ ....++.+...|.+.+++.+|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 568999999999999999999999987 1 122 2457788888999999999999999988765
Q ss_pred ---CC---CCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 590 ---EP---SNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 590 ---~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
.| +...+|..|+.+|.++|++++|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44 445578899999999999999999999886
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-08 Score=93.03 Aligned_cols=470 Identities=13% Similarity=0.100 Sum_probs=245.7
Q ss_pred HHhcCChhHHHHHHhcCCCC----CcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHH
Q 005265 95 LLKWGFIDDASRLFASMPER----DQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMG 170 (705)
Q Consensus 95 ~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 170 (705)
+....++..|+.+++--..- ...+--.+..++.+.|++++|+..+.-+.+.. .|+...+..+.-...-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 34445555555555432210 01122234455667777888877777766643 34444444444444445666666
Q ss_pred HHHHHHHHHcCCCCChhhH-HHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 005265 171 TQVHALLSKSRYSSDVYMG-SALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIE 249 (705)
Q Consensus 171 ~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 249 (705)
+++-... |+.... ..|.+...+.++-++-..+-+.+.+. ..---+|.+.....-.+++|+++|.+.+..+
T Consensus 111 ~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-- 181 (557)
T KOG3785|consen 111 KSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN-- 181 (557)
T ss_pred HHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 6654432 222233 33445555666655555444443321 1222334444444456788888888887643
Q ss_pred CCHhHHHHHHHH-HHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHh--cCChHHHHHHHhhCCCCCcccHHHHH
Q 005265 250 PDEVTLASVVSA-CASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAK--CGKLNEARCVFDRMPIRNVVSETSMV 326 (705)
Q Consensus 250 p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~li 326 (705)
|+-...+.-+.. |.+..-++.+.+++.-.++. ++.+....|.......+ .|+..++. .+.+. .|...-...+
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E--~k~la-dN~~~~~~f~ 256 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDE--KKELA-DNIDQEYPFI 256 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHH--HHHHH-hcccccchhH
Confidence 444444443433 34566666667777666665 44455555544433333 23332222 11111 1111111222
Q ss_pred HHHHhc-----CCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHh-----
Q 005265 327 SGYAKA-----SSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACA----- 396 (705)
Q Consensus 327 ~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----- 396 (705)
.-+++. .+-+.|.+++-.+...-+.+--.++--|.+.++..+|..+.+++.- ..|-......+..+-.
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcC
Confidence 223322 2234555555444333333334455567777777777777665532 2232222222222110
Q ss_pred hcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHH
Q 005265 397 NLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEA 476 (705)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 476 (705)
....+.-|.+.|...-.++. +.| .+..-.++.+++.-..+++++
T Consensus 335 SreHlKiAqqffqlVG~Sa~------ecD------------------------------TIpGRQsmAs~fFL~~qFddV 378 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESAL------ECD------------------------------TIPGRQSMASYFFLSFQFDDV 378 (557)
T ss_pred cHHHHHHHHHHHHHhccccc------ccc------------------------------cccchHHHHHHHHHHHHHHHH
Confidence 11122333333333322222 111 222334455555556667777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhCC
Q 005265 477 LGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHY-TCMVDLLGRAGCLDEAKTLIEAMP 555 (705)
Q Consensus 477 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~ 555 (705)
+..+..+..- +.-|...-..+..+.+..|.+.+|.++|-.+... .++ +..+| ..|..+|.++|..+-|.+++-++.
T Consensus 379 l~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 379 LTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 7777766664 2333333345667778888888888888766321 222 33444 445678888888888888888886
Q ss_pred CCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCc
Q 005265 556 MQPDAVIWGSLLAA-CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPG 630 (705)
Q Consensus 556 ~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 630 (705)
-..+..+...+|.- |.+.+.+--|-+.|..+..++|.... | .|+......+|+.+......|.|+
T Consensus 456 t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn-W---------eGKRGACaG~f~~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 456 TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN-W---------EGKRGACAGLFRQLANHKTDPIPI 521 (557)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc-c---------CCccchHHHHHHHHHcCCCCCCch
Confidence 45566666666655 88888888888888888888775432 2 356566667777666544444443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-09 Score=100.00 Aligned_cols=276 Identities=13% Similarity=0.085 Sum_probs=194.8
Q ss_pred CCHHHHHHHHHhcCCC---CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHH
Q 005265 333 SSVKSARLMFTKMLER---NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHT 409 (705)
Q Consensus 333 ~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 409 (705)
|++..|++...+-.+. ....|..-+.+--+.|+.+.+-.++.+..+.--.++.....+........|+.+.|..-..
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 4455555555554332 2233444455666778888888888887765334444455555566677788888888888
Q ss_pred HHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCC-----------hhHHHHHHHHHHHcCChHHHHH
Q 005265 410 HVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERD-----------WVSWNAMIVGCAQNGYGTEALG 478 (705)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~ 478 (705)
.+.+.+ +.++.+.....++|.+.|++.....++..+.+.. ..+|+.+++-....+..+.-..
T Consensus 178 ~ll~~~-------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 178 QLLEMT-------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHhC-------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 887776 4677788888888888888888888888886542 2367777776666666666556
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CC
Q 005265 479 LFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM--PM 556 (705)
Q Consensus 479 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~ 556 (705)
.|+..-.. .+-+...-.+++.-+..+|+.++|.++..+..++ +..|.. ..+ -...+-++...=++..+.. ..
T Consensus 251 ~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~~-~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 251 WWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CRL-IPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HHH-HhhcCCCCchHHHHHHHHHHHhC
Confidence 66665543 5556666777888889999999999999888776 556651 111 2234455555444444443 12
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 557 QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 557 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+.++..+.+|..-|.+++.+.+|...++.+++..|+.. .|..++..+.+.|+..+|.+++++...
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 23447788899999999999999999999999999764 599999999999999999999998874
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.6e-09 Score=97.18 Aligned_cols=222 Identities=15% Similarity=0.114 Sum_probs=136.7
Q ss_pred HhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChh--------HHHHHHHH
Q 005265 395 CANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWV--------SWNAMIVG 466 (705)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~ 466 (705)
|...|-++.|+.+|..+.+.+ +.-......|+..|-+..+|++|+++-++..+-+.. .|.-+...
T Consensus 117 ym~aGl~DRAE~~f~~L~de~-------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEG-------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcch-------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 344455555555555555433 234445556666677777777777666655432221 24445555
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCC
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL--KDHYTCMVDLLGRAGC 543 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~ 543 (705)
+....+.+.|..++.+..+ ..|+.+ .-..+.+.....|+++.|.+.++.+.+. .|+ ..+...|..+|...|+
T Consensus 190 ~~~~~~~d~A~~~l~kAlq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 190 ALASSDVDRARELLKKALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred HhhhhhHHHHHHHHHHHHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCC
Confidence 5566777788888888777 345443 2334445667778888888888877644 344 6667777788888888
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH---hcCChhHHHHHHHH
Q 005265 544 LDEAKTLIEAM-PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA---ELGRWGEVVRVRKL 619 (705)
Q Consensus 544 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~ 619 (705)
.++...++.++ ...+....-..+...-....-.+.|...+.+-+...|.--. +..|+.... .-|++.+....++.
T Consensus 265 ~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g-f~rl~~~~l~daeeg~~k~sL~~lr~ 343 (389)
T COG2956 265 PAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG-FHRLMDYHLADAEEGRAKESLDLLRD 343 (389)
T ss_pred HHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH-HHHHHHhhhccccccchhhhHHHHHH
Confidence 88888877776 34444444444544444444456677777777777776544 344444432 24668888888888
Q ss_pred HHhCCCccCC
Q 005265 620 MRKRGVVKQP 629 (705)
Q Consensus 620 ~~~~~~~~~~ 629 (705)
|..+.++..|
T Consensus 344 mvge~l~~~~ 353 (389)
T COG2956 344 MVGEQLRRKP 353 (389)
T ss_pred HHHHHHhhcC
Confidence 8876666555
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-07 Score=97.60 Aligned_cols=459 Identities=14% Similarity=0.105 Sum_probs=246.4
Q ss_pred hCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHh---hCCCCcHHH-------------------HH----HHHHHHHcC
Q 005265 128 QHDRFSEALGYFVKMHSENFALSEYSFGSALSAC---AGSVDFKMG-------------------TQ----VHALLSKSR 181 (705)
Q Consensus 128 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~~~~a-------------------~~----~~~~~~~~g 181 (705)
+.++.+.++.-+......+...+..++..+...+ ...++.+.+ .. .+.++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 3556677777777666666666666655554432 233444433 11 111222223
Q ss_pred CCCChhhHHHHHHHhhcCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-hHHHH
Q 005265 182 YSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE---RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDE-VTLAS 257 (705)
Q Consensus 182 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ 257 (705)
+..|..+|..|.-+..++|+++.+.+.|++... .....|+.+...+...|.-..|..+++.-....-.|+. ..+..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 455677777777777777888888888877654 34456777777777778777777777766543323433 33333
Q ss_pred HHHHHH-ccCChHHHHHHHHHHHHcCCC---CCChhHHHHHHHHHHhc----CChHHHHHHHhhCCCCCcccHHHHHHHH
Q 005265 258 VVSACA-SLAAFKEGLQIHARLMRCEKL---RNDLVLGNALVDMYAKC----GKLNEARCVFDRMPIRNVVSETSMVSGY 329 (705)
Q Consensus 258 ll~~~~-~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~~ 329 (705)
.-..|. +.+..++++.+-.+++...+- ......|..+.-+|... ....+=.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~--------------------- 457 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERD--------------------- 457 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHH---------------------
Confidence 333443 346666676666666652111 11122333333333321 1110000
Q ss_pred HhcCCHHHHHHHHHhcCC---CCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHH
Q 005265 330 AKASSVKSARLMFTKMLE---RNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQ 406 (705)
Q Consensus 330 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 406 (705)
....++.+.+++..+ .|+.....+.--|+..++.+.|++..++..+.+-.-+...+..+.-.+...+++..|..
T Consensus 458 ---~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 458 ---ALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred ---HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 001222233333322 12222222223344444445555555544444333344444444444444444444444
Q ss_pred HHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHH--------------------------HHHHccC----C-C
Q 005265 407 AHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGC--------------------------RIFETMV----E-R 455 (705)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~--------------------------~~~~~~~----~-~ 455 (705)
+.+.....-. .|......-++.-..-++.++|. +....+. + .
T Consensus 535 vvd~al~E~~-------~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~ 607 (799)
T KOG4162|consen 535 VVDAALEEFG-------DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPT 607 (799)
T ss_pred HHHHHHHHhh-------hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccc
Confidence 4443332110 00000000011111122222222 2222221 0 0
Q ss_pred C-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh--------hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 005265 456 D-WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV--------TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP 526 (705)
Q Consensus 456 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 526 (705)
+ +.++..+..-....+ ..+..-.. |...-+.|... .|......+...+..++|...+.+.. ++.|
T Consensus 608 ~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~ 681 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDP 681 (799)
T ss_pred ccchhhHHHHHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcch
Confidence 1 122222222111111 11000000 12111223221 24455567788889999988777664 3444
Q ss_pred C-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCCCchHHHHH
Q 005265 527 L-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEY--VAKKLLEIEPSNSGPYVLLS 601 (705)
Q Consensus 527 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~ 601 (705)
- ...|.-....+...|++++|.+.|... -+.|+ +.+..++...+.+.|+...|.. ++..+++++|.++.+|..|+
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 4 778888888999999999999998877 56775 6688899999999999988888 99999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 005265 602 NMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 602 ~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
.++.+.|+.+.|.+.|.....-
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhh
Confidence 9999999999999999988754
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.5e-08 Score=92.38 Aligned_cols=265 Identities=11% Similarity=0.004 Sum_probs=181.1
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHH---HHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHH
Q 005265 318 NVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNAL---IAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNA 394 (705)
Q Consensus 318 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 394 (705)
|+.....+...+...|+..+|+..|++...-|+.+...| .-.+.+.|+.++...+...+.... .-+...|-.-...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 333444444444445555555555555544443332221 233456677777766666665421 1122222222233
Q ss_pred HhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC--C-CChhHHHHHHHHHHHcC
Q 005265 395 CANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV--E-RDWVSWNAMIVGCAQNG 471 (705)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g 471 (705)
.....+++.|..+-.+.++.. +.++..+-.-...+...|++++|.-.|+... . -+..+|.-|+.+|...|
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~-------~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSE-------PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccC-------cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc
Confidence 345567777777777777665 3455666656677788899999998888764 3 37889999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHH-HHHh-ccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHH
Q 005265 472 YGTEALGLFKKMLLCGEKPDHVTMIGVL-CACS-HAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAK 548 (705)
Q Consensus 472 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 548 (705)
++.+|.-+-+...+. +.-+..+...+. ..|. ....-++|.++++... .+.|+ ....+.+...+...|..++++
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHH
Confidence 999998887776663 333444555442 3333 3344578999998554 67888 777788889999999999999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 549 TLIEAM-PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 549 ~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
.+++.. ...||....+.|...+...+.+.+|...|..++.++|++.
T Consensus 459 ~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 459 KLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 999987 6679999999999999999999999999999999999874
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-07 Score=91.96 Aligned_cols=441 Identities=12% Similarity=0.122 Sum_probs=239.6
Q ss_pred HHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHH--HHHHhh--c
Q 005265 123 VSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSA--LIDMYG--K 198 (705)
Q Consensus 123 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~--~ 198 (705)
+..+.+.|++++|.+...++...+ +-+...+..-+-+..+.+.++.|..+.+ ..+. ..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence 455666777888888888877765 3345556666666677777777664332 2221 111111 233443 5
Q ss_pred CCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHccCChHHHHHHHHH
Q 005265 199 CGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDE-VTLASVVSACASLAAFKEGLQIHAR 277 (705)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~ 277 (705)
.+..++|++.++.....+..+...-...+.+.|++++|+++|+.+.+.+..--. ..-..++.+-... -..
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l---------~~~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL---------QVQ 162 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh---------hHH
Confidence 677777777777555555445555566667777777777777777665432211 1111121111110 000
Q ss_pred HHHcCCCCCChhHHHH---HHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhc-CCCCe---
Q 005265 278 LMRCEKLRNDLVLGNA---LVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKM-LERNV--- 350 (705)
Q Consensus 278 ~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~-~~~~~--- 350 (705)
.++.-...| ..+|.. ..-.+...|++.+|+++++... ++..+- ...|.
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~------------------------~~~~e~l~~~d~~eE 217 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKAL------------------------RICREKLEDEDTNEE 217 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHH------------------------HHHHHhhcccccchh
Confidence 111110111 112222 2233455566666666554331 000000 11110
Q ss_pred -------ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHH---HHHhhcccHH--------------HHHH
Q 005265 351 -------VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLL---NACANLADLQ--------------LGRQ 406 (705)
Q Consensus 351 -------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll---~~~~~~~~~~--------------~a~~ 406 (705)
..--.|.-.+-..|+..+|..+|...++.. .+|........ .+.....++. .+..
T Consensus 218 eie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~ 296 (652)
T KOG2376|consen 218 EIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEF 296 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHH
Confidence 011234455667888888888888887765 34442222111 1111111111 1111
Q ss_pred HHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCC-hhHHHHHHHHHHH--cCChHHHHHHHHHH
Q 005265 407 AHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERD-WVSWNAMIVGCAQ--NGYGTEALGLFKKM 483 (705)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~--~g~~~~A~~~~~~m 483 (705)
....+.... ......-+.++.+|. +.-+.+.++-...+... ...+.+++....+ ...+..|.+++...
T Consensus 297 ~l~~Ls~~q-------k~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~ 367 (652)
T KOG2376|consen 297 LLSKLSKKQ-------KQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQF 367 (652)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 111111111 112222234444443 55667777777776443 3445555544332 23467788887776
Q ss_pred HHCCCCCCh--hhHHHHHHHHhccCcHHHHHHHHH--------HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 005265 484 LLCGEKPDH--VTMIGVLCACSHAGLVEEGRKYFS--------SMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEA 553 (705)
Q Consensus 484 ~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (705)
-+. .|.. ......+......|+++.|.+++. .+. .+.-.+.+..+++..|.+.++-+-|..++.+
T Consensus 368 ~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~ 442 (652)
T KOG2376|consen 368 ADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDS 442 (652)
T ss_pred hcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHH
Confidence 663 3443 345555667788999999999988 442 2334456677888899999887777777766
Q ss_pred C-----CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 005265 554 M-----PMQPDAV----IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLM 620 (705)
Q Consensus 554 ~-----~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 620 (705)
. ...+... +|.-+...-.++|+.++|..+++++++.+|++......++.+|++. +.+.|..+-+++
T Consensus 443 Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 443 AIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 5 1122222 3333444455779999999999999999999999999999999876 456676665544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.3e-06 Score=88.39 Aligned_cols=500 Identities=14% Similarity=0.130 Sum_probs=298.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHhcCCC--CCc-----ccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHH
Q 005265 88 WNSIITGLLKWGFIDDASRLFASMPE--RDQ-----CSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSA 160 (705)
Q Consensus 88 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 160 (705)
+-.+.+.|-++|-...|++.+..+.. +.+ ..-..++. |.-.-.++.+++.++.|...+++.|..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~-yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVN-YFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 55666778888888888888877653 211 11122333 33344688899999999988888887776666666
Q ss_pred hhCCCCcHHHHHHHHHHHHc-----------CCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC---------------
Q 005265 161 CAGSVDFKMGTQVHALLSKS-----------RYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE--------------- 214 (705)
Q Consensus 161 ~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------- 214 (705)
|...=..+...++|+..... ++.-|+.+.-..|.+.|+.|++.+..++.++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 65544445555555554432 2455677777889999999999988888765431
Q ss_pred C----------------CcchH------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhH-------------HHHHH
Q 005265 215 R----------------NIVSW------NSLITCYEQNGPASDALEVFVRMMASGIEPDEVT-------------LASVV 259 (705)
Q Consensus 215 ~----------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------------~~~ll 259 (705)
+ |.+.| -..|..|.+.-++...-.+.-.+++..+ +... ...+.
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC--~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC--SEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC--cHHHHHHHHHHHhccCChHHHH
Confidence 1 11111 1123344443333333222222222111 1111 12233
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC------------CCCc--------
Q 005265 260 SACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMP------------IRNV-------- 319 (705)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------~~~~-------- 319 (705)
.-+-+.+++..-..+++..+..| ..|..++|+|...|..+++-.+-. +++-. ++|+
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~f--LkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPERF--LKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHHh--cccCCcchhhHHhhhhcccCCceEEEeec
Confidence 44556677777778888888887 678899999999988776544322 11111 1111
Q ss_pred -----------ccHHHHH----HHHHhcCCHHHHHHHHH-----------hc-----C-CCCeehHHHHHHHHHHcCChH
Q 005265 320 -----------VSETSMV----SGYAKASSVKSARLMFT-----------KM-----L-ERNVVSWNALIAGYTQNGENE 367 (705)
Q Consensus 320 -----------~~~~~li----~~~~~~~~~~~A~~~~~-----------~~-----~-~~~~~~~~~li~~~~~~g~~~ 367 (705)
-.-|++. +-+.+..+.+--.+++. .. + ..|+..-...+.++...+-+.
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 0112222 22233344332222221 11 1 135555666778888888888
Q ss_pred HHHHHHHHhhhCCCCc--chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCC-----------------CCCCCcHhH
Q 005265 368 EALGLFRLLKRESVCP--THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFL-----------------SGEESDIFV 428 (705)
Q Consensus 368 ~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~~~~~~ 428 (705)
+-++++++..-..-.- +...-+.++-. +-..+.....++..++-...-+-. .....+...
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A 1080 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSA 1080 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHH
Confidence 8888888876332111 11111222211 111222222222222211110000 000122222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcH
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLV 508 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 508 (705)
.+.|++ ..+.+++|.+.-++.. .+..|..+..+-.+.|...+|++-|-+. -|...|..+++.+.+.|.+
T Consensus 1081 ~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~ 1149 (1666)
T KOG0985|consen 1081 IQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKY 1149 (1666)
T ss_pred HHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcH
Confidence 222222 2234444444444433 3457999999999999999999887432 3556899999999999999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005265 509 EEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLE 588 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 588 (705)
++-..++...+++ .-+|.. -+.|+-+|++.+++.+-++++. -||..-...+.+-|...|.++.|.-+|..
T Consensus 1150 edLv~yL~MaRkk-~~E~~i--d~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--- 1219 (1666)
T KOG0985|consen 1150 EDLVKYLLMARKK-VREPYI--DSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--- 1219 (1666)
T ss_pred HHHHHHHHHHHHh-hcCccc--hHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH---
Confidence 9999999876554 445554 4678999999999998877764 57888888888999999999999888874
Q ss_pred hCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 589 IEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 589 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
.+.|..|+..+...|.+..|...-++.-
T Consensus 1220 -----vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1220 -----VSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3458899999999999998887766543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-11 Score=82.79 Aligned_cols=50 Identities=30% Similarity=0.569 Sum_probs=47.8
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc
Q 005265 215 RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACAS 264 (705)
Q Consensus 215 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 264 (705)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-09 Score=112.89 Aligned_cols=241 Identities=13% Similarity=0.018 Sum_probs=178.3
Q ss_pred ChHHHHHHHHHhhhCCCCcch-hhHHHHHHHHh---------hcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHH
Q 005265 365 ENEEALGLFRLLKRESVCPTH-YTFGNLLNACA---------NLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLID 434 (705)
Q Consensus 365 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 434 (705)
..++|+.+|++..+. .|+. ..+..+..++. ..+++++|...++++++.. +.+...+..+..
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-------P~~~~a~~~lg~ 346 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-------HNNPQALGLLGL 346 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-------CCCHHHHHHHHH
Confidence 346788888877764 3443 33433333332 2345789999999998887 467888889999
Q ss_pred HHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCcHHH
Q 005265 435 MYMKCGSVEDGCRIFETMVE--R-DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAGLVEE 510 (705)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~ 510 (705)
.+...|++++|...|++..+ | +...|..+...+...|++++|+..+++.++ +.|+.. .+..++..+...|++++
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHH
Confidence 99999999999999998763 3 566888899999999999999999999999 567653 33344555677899999
Q ss_pred HHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHH
Q 005265 511 GRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVI-WGSLLAACKVHRNIMLGEYVAKKLL 587 (705)
Q Consensus 511 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~ 587 (705)
|...++++.+. ..|+ +..+..+..+|...|+.++|...++++ +..|+... ++.+...+...| +.|...+++++
T Consensus 425 A~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 425 AIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 99999988654 2354 556778888999999999999999987 44555444 444445566667 47888888877
Q ss_pred hh---CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 588 EI---EPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 588 ~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
+. .|.++. .+..+|.-.|+-+.+..+ +++.+.+
T Consensus 501 ~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 501 ESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 65 444433 477788888998888777 7777654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-11 Score=82.45 Aligned_cols=50 Identities=22% Similarity=0.523 Sum_probs=44.3
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhC
Q 005265 114 RDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAG 163 (705)
Q Consensus 114 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 163 (705)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888899999999999999999999999999999999999999988864
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-07 Score=87.80 Aligned_cols=279 Identities=13% Similarity=0.012 Sum_probs=201.0
Q ss_pred CCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhh----HHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCC
Q 005265 347 ERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYT----FGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGE 422 (705)
Q Consensus 347 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (705)
..|+.....+...+...|+.++|+..|++.+.. .|+..+ |..++ .+.|+.+....+...+....
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL---~~eg~~e~~~~L~~~Lf~~~------- 296 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLL---GQEGGCEQDSALMDYLFAKV------- 296 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHH---HhccCHhhHHHHHHHHHhhh-------
Confidence 357778888999999999999999999987753 343322 33333 45566666666655554332
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGV 498 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l 498 (705)
......|-.-........+++.|+.+-++..+- ++..+-.-...+...|++++|.-.|+..+. +.|.. ..|..+
T Consensus 297 ~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL 374 (564)
T KOG1174|consen 297 KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGL 374 (564)
T ss_pred hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHH
Confidence 112222222233344567888998888877643 555565556778889999999999999988 67654 699999
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH-HHHH-hcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcC
Q 005265 499 LCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMV-DLLG-RAGCLDEAKTLIEAM-PMQPDAV-IWGSLLAACKVHR 574 (705)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g 574 (705)
+.+|...|+..+|.-.-....+.. ..+..+...+. ..+. ...--++|.+++++. .+.|+.. ..+.+...|...|
T Consensus 375 ~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg 452 (564)
T KOG1174|consen 375 FHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEG 452 (564)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC
Confidence 999999999999988777665542 33455554442 2222 233457889999887 6778754 5566666799999
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEeEEeeCCcCCCChh
Q 005265 575 NIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNK 654 (705)
Q Consensus 575 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (705)
..+.+..++++.+...|+. ..+..|++++...+.+.+|...|.... ..+|+.+
T Consensus 453 ~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~AL--------------------------r~dP~~~ 505 (564)
T KOG1174|consen 453 PTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKAL--------------------------RQDPKSK 505 (564)
T ss_pred ccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHH--------------------------hcCccch
Confidence 9999999999999999987 458999999999999999999998877 3567777
Q ss_pred HHHHHHHHHHHHHH
Q 005265 655 EIYLVLKMLTREMK 668 (705)
Q Consensus 655 ~~~~~l~~l~~~~~ 668 (705)
....-+..+.+++.
T Consensus 506 ~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 506 RTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHHHHHHhccC
Confidence 77887766666665
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-06 Score=92.02 Aligned_cols=526 Identities=11% Similarity=0.051 Sum_probs=256.8
Q ss_pred ChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC---------------CChhhHHHHHHHHHhc
Q 005265 34 SVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN---------------KNVFTWNSIITGLLKW 98 (705)
Q Consensus 34 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~ 98 (705)
.++...+++..|...+++-+..+.-.+..-|...=..+.-.++|+.... .|+.+.--.|.+-|+.
T Consensus 658 sve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt 737 (1666)
T KOG0985|consen 658 SVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKT 737 (1666)
T ss_pred CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhh
Confidence 3566666777777777777777777777777777677778888888753 4555666778899999
Q ss_pred CChhHHHHHHhcCCC-------------------C-----CcccHH-------------HHHHHHHhCCChHHHHHHHHH
Q 005265 99 GFIDDASRLFASMPE-------------------R-----DQCSWN-------------SMVSGFAQHDRFSEALGYFVK 141 (705)
Q Consensus 99 g~~~~A~~~~~~~~~-------------------~-----~~~~~~-------------~li~~~~~~~~~~~a~~~~~~ 141 (705)
|.+.+..++.++-.- | |...+- ..|..|.+.=++...-.+.-.
T Consensus 738 ~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~ 817 (1666)
T KOG0985|consen 738 GQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGA 817 (1666)
T ss_pred ccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhh
Confidence 999888887765420 1 111111 123333333232222222222
Q ss_pred hHhCCCCCChhhH-------------HHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHH
Q 005265 142 MHSENFALSEYSF-------------GSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRV 208 (705)
Q Consensus 142 m~~~g~~p~~~~~-------------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 208 (705)
++.... +.... .-+..-+-+.+++..-...++..+..|.. |..++|+|...|..+++-.+- .
T Consensus 818 LLD~dC--~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~--f 892 (1666)
T KOG0985|consen 818 LLDVDC--SEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPER--F 892 (1666)
T ss_pred hhcCCC--cHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHH--h
Confidence 221111 11111 12223344555666667777888888866 899999999999877654321 1
Q ss_pred HhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCHhHHHHHHHHHHccCChH-----------HHHH
Q 005265 209 FDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMAS----GIEPDEVTLASVVSACASLAAFK-----------EGLQ 273 (705)
Q Consensus 209 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~-----------~a~~ 273 (705)
+.+- ..-=+..+.-||...++.-|.-.|++-... ++.-....|....+-+....+.+ --++
T Consensus 893 LkeN----~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRq 968 (1666)
T KOG0985|consen 893 LKEN----PYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQ 968 (1666)
T ss_pred cccC----CcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHH
Confidence 1111 111111112222222221111111100000 00000011111111111111111 0112
Q ss_pred HHHHHHHcCCCC--CChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCccc-----HHHHH-------------------
Q 005265 274 IHARLMRCEKLR--NDLVLGNALVDMYAKCGKLNEARCVFDRMP-IRNVVS-----ETSMV------------------- 326 (705)
Q Consensus 274 ~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~-----~~~li------------------- 326 (705)
+.++++..+ ++ .|+.-.+..+.++...+-..+-+++++++. .+++.+ -|.++
T Consensus 969 LiDqVv~ta-l~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLd 1047 (1666)
T KOG0985|consen 969 LIDQVVQTA-LPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLD 1047 (1666)
T ss_pred HHHHHHHhc-CCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhc
Confidence 223333322 21 123333344444444454555555554443 111111 01111
Q ss_pred --------HHHHhcCCHHHHHHHHHhcCC-------------------------CCeehHHHHHHHHHHcCChHHHHHHH
Q 005265 327 --------SGYAKASSVKSARLMFTKMLE-------------------------RNVVSWNALIAGYTQNGENEEALGLF 373 (705)
Q Consensus 327 --------~~~~~~~~~~~A~~~~~~~~~-------------------------~~~~~~~~li~~~~~~g~~~~A~~~~ 373 (705)
......+-+++|..+|++..- ..+..|..+..+-.+.|...+|++-|
T Consensus 1048 nyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1048 NYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred cCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHH
Confidence 111223334455555444310 23457888888888888888888877
Q ss_pred HHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC
Q 005265 374 RLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV 453 (705)
Q Consensus 374 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 453 (705)
-+. -|+..|..+++.+.+.|.++.-...+..+.+... +|. +-+.|+-+|++.+++.+-.+.+.
T Consensus 1128 ika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~------E~~--id~eLi~AyAkt~rl~elE~fi~--- 1190 (1666)
T KOG0985|consen 1128 IKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR------EPY--IDSELIFAYAKTNRLTELEEFIA--- 1190 (1666)
T ss_pred Hhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc------Ccc--chHHHHHHHHHhchHHHHHHHhc---
Confidence 432 3566788889999999999888888887777654 444 44678888888888877665543
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 005265 454 ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTC 533 (705)
Q Consensus 454 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 533 (705)
.||..-...+..-|...|.++.|.-+|... ..|..+...+...|.+..|...-++. .+..+|..
T Consensus 1191 gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~ 1254 (1666)
T KOG0985|consen 1191 GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKE 1254 (1666)
T ss_pred CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHH
Confidence 344444444455555555555554444322 12444444444444444443332211 12334444
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 005265 534 MVDLLGRAGCLDEAKTLIEAMPM--QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAE 606 (705)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 606 (705)
+-.+|...+.+.-|. -.++ -....-...++..|...|-+++-..+++..+.++..+.+.|.-|+-+|++
T Consensus 1255 VcfaCvd~~EFrlAQ----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1255 VCFACVDKEEFRLAQ----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHhchhhhhHHH----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 444444333332221 1111 11222233444445555555555555555555544444445555544444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-06 Score=89.29 Aligned_cols=448 Identities=14% Similarity=0.135 Sum_probs=221.3
Q ss_pred ChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 005265 100 FIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSK 179 (705)
Q Consensus 100 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 179 (705)
++.+|..+|-+-. .-...|..|....+|++++.+-+.. |.+.-...-.+.++++...|+-+.|-++
T Consensus 546 kfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~el------ 611 (1636)
T KOG3616|consen 546 KFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAEL------ 611 (1636)
T ss_pred hhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhh------
Confidence 4556665553211 1123455666666777776664432 3222222233445555555655554433
Q ss_pred cCCCCChhhHHHHHHHhhcCCChHHHHHHHhccC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 005265 180 SRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMR--ERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLAS 257 (705)
Q Consensus 180 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 257 (705)
..+..-..+-|+.|.+.|.+-.|.+....-. ..|......+..++.+..-+++|-++|+++.. |+ -
T Consensus 612 ---k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d----~d-----k 679 (1636)
T KOG3616|consen 612 ---KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FD-----K 679 (1636)
T ss_pred ---ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HH-----H
Confidence 1122223456788899998888877653322 24555566666666666666667666666543 11 1
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCChhHH-HHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHH
Q 005265 258 VVSACASLAAFKEGLQIHARLMRCEKLRNDLVLG-NALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVK 336 (705)
Q Consensus 258 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 336 (705)
.+..+-+..-+.+|.++-+.. +|..++.. ..-..-+...|+++.|..-|-+.. ..-..+.+-.....+.
T Consensus 680 ale~fkkgdaf~kaielarfa-----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~ 749 (1636)
T KOG3616|consen 680 ALECFKKGDAFGKAIELARFA-----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWK 749 (1636)
T ss_pred HHHHHHcccHHHHHHHHHHhh-----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhh
Confidence 222222222233333332221 11111111 111222333444444443332111 0011122334445555
Q ss_pred HHHHHHHhcCCCCee--hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHh
Q 005265 337 SARLMFTKMLERNVV--SWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKH 414 (705)
Q Consensus 337 ~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 414 (705)
+|+.+++.+...++. -|..+...|+..|+++.|.++|-+.- .++-.|..|.+.|.++.|.++-.+..
T Consensus 750 kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~-- 818 (1636)
T KOG3616|consen 750 KAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH-- 818 (1636)
T ss_pred hhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--
Confidence 555555555443332 24445555666666666666554321 12334555556666655555443322
Q ss_pred CCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--
Q 005265 415 GLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-- 492 (705)
Q Consensus 415 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-- 492 (705)
|. +..+..|-+-..-+-+.|++.+|.+++-.+..|+.. |..|-++|..++.+++..+- .|+.
T Consensus 819 ~~------e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~-----h~d~l~ 882 (1636)
T KOG3616|consen 819 GP------EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKH-----HGDHLH 882 (1636)
T ss_pred Cc------hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHh-----Chhhhh
Confidence 22 334445555555556667777777776666666543 55666677777666665542 2332
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC----CHHHHHH---
Q 005265 493 VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQP----DAVIWGS--- 565 (705)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~--- 565 (705)
.|...+..-+...|++..|...|-+.. -|.+-+++|..++.|++|.++-+.-+-.. -...|.-
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksig 952 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIG 952 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhC
Confidence 355555666666777777776665431 25556667777777777776665442110 0111111
Q ss_pred ---HHHHHHhcCCH-------------HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 566 ---LLAACKVHRNI-------------MLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 566 ---l~~~~~~~g~~-------------~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+..+-++|.. +-|..+.+-.. ....+.++..++..+...|++++|-+.+-+..+
T Consensus 953 gdaavkllnk~gll~~~id~a~d~~afd~afdlari~~--k~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 953 GDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAA--KDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred cHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhh--hccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 11112233333 33333333222 223345567777778888888888777766554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-09 Score=99.31 Aligned_cols=222 Identities=12% Similarity=0.027 Sum_probs=183.6
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHH
Q 005265 390 NLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE--R-DWVSWNAMIVG 466 (705)
Q Consensus 390 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~ 466 (705)
.+-.+|.+.|.+..|...++...+. .|-+.+|--|-..|.+..+++.|+.+|.+..+ | |+....-+...
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 3445556666666666666655554 56777888889999999999999999998874 3 55555667778
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChH
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLD 545 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 545 (705)
+...++.++|.++|+...+ ..|+ ......+...|...++++.|+.+++++.+- |+ .++..|+.+.-+|.-.++++
T Consensus 300 ~eam~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchh
Confidence 8889999999999999998 4454 457777788888999999999999999765 64 46788999988899999999
Q ss_pred HHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 005265 546 EAKTLIEAM---PMQPD--AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLM 620 (705)
Q Consensus 546 ~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 620 (705)
-++.-|++. --+|+ ..+|..+.......||+..|.+.|+-++..+|++..++++|+-+-.+.|+.++|+.+++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 999999887 12344 5589999888999999999999999999999999999999999999999999999999988
Q ss_pred HhC
Q 005265 621 RKR 623 (705)
Q Consensus 621 ~~~ 623 (705)
.+.
T Consensus 456 ~s~ 458 (478)
T KOG1129|consen 456 KSV 458 (478)
T ss_pred hhh
Confidence 764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.8e-06 Score=83.17 Aligned_cols=67 Identities=18% Similarity=0.133 Sum_probs=46.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHh-hCCCCCchHHH
Q 005265 533 CMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAA-CKVHRNIMLGEYVAKKLLE-IEPSNSGPYVL 599 (705)
Q Consensus 533 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~ 599 (705)
+.++++...++|++|++.-++-..+|-..-|.++-.+ +.+.|+..++..++++--. .+|.+..+|-.
T Consensus 1297 aaidl~ien~qwdk~idtak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~ 1365 (1636)
T KOG3616|consen 1297 AAIDLMIENDQWDKAIDTAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKL 1365 (1636)
T ss_pred HHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHH
Confidence 4567888889999988888877777766666666555 5677888888887776433 25555555543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5e-09 Score=112.54 Aligned_cols=211 Identities=14% Similarity=0.025 Sum_probs=166.6
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHh---------cCCHHHHHHHHHccCC---CChhHHHHHHHH
Q 005265 399 ADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMK---------CGSVEDGCRIFETMVE---RDWVSWNAMIVG 466 (705)
Q Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 466 (705)
++++.|...+++.++.. +.+...+..+..+|.. .+++++|...+++..+ .+...|..+...
T Consensus 275 ~~~~~A~~~~~~Al~ld-------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~ 347 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLI 347 (553)
T ss_pred HHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45688999999998876 3456667666665542 3458899999998764 367788889889
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCh
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCL 544 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 544 (705)
+...|++++|...|++.++ ..|+. ..+..+..++...|++++|...++.+.+ +.|+ ...+..+...+...|++
T Consensus 348 ~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~ 422 (553)
T PRK12370 348 NTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGI 422 (553)
T ss_pred HHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCH
Confidence 9999999999999999999 56775 4677888899999999999999998864 4565 23334445567778999
Q ss_pred HHHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 545 DEAKTLIEAM--PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 545 ~~A~~~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
++|...+++. ...|+ +..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.
T Consensus 423 eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 423 DDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 9999999887 22354 4456667777889999999999999998888888888888888888888 48888888876
Q ss_pred hC
Q 005265 622 KR 623 (705)
Q Consensus 622 ~~ 623 (705)
+.
T Consensus 501 ~~ 502 (553)
T PRK12370 501 ES 502 (553)
T ss_pred HH
Confidence 53
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-06 Score=89.89 Aligned_cols=133 Identities=19% Similarity=0.123 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 005265 458 VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMV 535 (705)
Q Consensus 458 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 535 (705)
..|......+.+.++.++|...+.+... +.|-. ..|......+...|..++|.+.|.... .+.|+ +....++.
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala 725 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALA 725 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHH
Confidence 3566677788888888999888877776 44543 456666667778899999999998664 67887 88889999
Q ss_pred HHHHhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 536 DLLGRAGCLDEAKT--LIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 536 ~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
.++.+.|+..-|.. ++..+ .+.| +...|..+...+.+.|+.+.|.+.|.-++++++.+|.
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999998777766 77776 5666 6779999999999999999999999999999877664
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-09 Score=92.61 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 005265 459 SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVD 536 (705)
Q Consensus 459 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 536 (705)
+...|.-+|...|+...|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|+... .+.|+ ..+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 345567788999999999999999998 677764 88888888999999999999999776 45665 778888888
Q ss_pred HHHhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhH
Q 005265 537 LLGRAGCLDEAKTLIEAMPMQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGE 612 (705)
Q Consensus 537 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 612 (705)
-+|..|++++|...|++.-..|+ ..+|..+..+..+.|+.+.|+..+++.++++|+.+.+...++....+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 89999999999999998843443 55888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 005265 613 VVRVRKLMRKRGV 625 (705)
Q Consensus 613 A~~~~~~~~~~~~ 625 (705)
|..+++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999999887765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-06 Score=81.41 Aligned_cols=213 Identities=12% Similarity=0.017 Sum_probs=138.3
Q ss_pred cHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcC-------C
Q 005265 400 DLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNG-------Y 472 (705)
Q Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-------~ 472 (705)
+-+.|.+++--+.+.- | ..--.|+-.|.+.+++.+|..+.++.....+.-|-.-...++..| +
T Consensus 269 ngEgALqVLP~L~~~I--------P--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKHI--------P--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred CCccHHHhchHHHhhC--------h--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 3455666665544431 2 233456777899999999999999987655554443333344444 3
Q ss_pred hHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 005265 473 GTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLI 551 (705)
Q Consensus 473 ~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 551 (705)
..-|.+.|+-.-+.+..-|.. --.++..++.-..++++.+.++..+. .+=...|...+ .+.++++..|++.+|+++|
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~-N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFNL-NLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhhh-HHHHHHHHhcChHHHHHHH
Confidence 445666666555555555543 34445555556678899998888874 43333344444 4789999999999999999
Q ss_pred HhCC-CC-CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhCCCCC-chHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005265 552 EAMP-MQ-PDAVIWGSL-LAACKVHRNIMLGEYVAKKLLEIEPSNS-GPYVLLSNMYAELGRWGEVVRVRKLMRKRGVV 626 (705)
Q Consensus 552 ~~~~-~~-p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 626 (705)
-... .+ .|..+|.++ ..+|.+.+.++.|..++-++- .|.+. .....+++-|.+.+.+--|.+.|..+......
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 8873 11 356666555 455778899988887754431 23332 22456778899999999899999888765433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.7e-07 Score=88.89 Aligned_cols=439 Identities=11% Similarity=0.065 Sum_probs=211.6
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCChhhHHHHHHHHH--hcCChh
Q 005265 25 LLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLL--KWGFID 102 (705)
Q Consensus 25 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~~g~~~ 102 (705)
=+..+...+++++|.+.-.+++..+ +-+.+....-+-++.+.+++++|.++.+.-........-.+=.+|| +.++.+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHH
Confidence 4566667788888888888888766 6666777777778888888888886655543211111111234444 566777
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCC-ChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Q 005265 103 DASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFAL-SEYSFGSALSACAGSVDFKMGTQVHALLSKSR 181 (705)
Q Consensus 103 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 181 (705)
+|+..++...+.+..+...-...+-+.|++++|+++|+.+.+.+..- +...-..++.+-.. ... ..+....
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~~~q~v~ 168 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-QLLQSVP 168 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-HHHHhcc
Confidence 77777764444444444555556666677777777777765553321 11111111111100 000 0111111
Q ss_pred CCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHC-------C------C
Q 005265 182 YSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMAS-------G------I 248 (705)
Q Consensus 182 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g------~ 248 (705)
..| ..+|..+.+. ...++..|++.+|+++++..... + +
T Consensus 169 ~v~-e~syel~yN~----------------------------Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEei 219 (652)
T KOG2376|consen 169 EVP-EDSYELLYNT----------------------------ACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEI 219 (652)
T ss_pred CCC-cchHHHHHHH----------------------------HHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhH
Confidence 111 2222222211 12233344444444444444110 0 0
Q ss_pred CCCHh-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHH----HHHHHHHHhcCChH-HHHHHHhhCCCCCc---
Q 005265 249 EPDEV-TLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLG----NALVDMYAKCGKLN-EARCVFDRMPIRNV--- 319 (705)
Q Consensus 249 ~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~-~A~~~~~~~~~~~~--- 319 (705)
.-+.. .-..+.-.+-..|+-++|..+|..+++.. ++|.... |.|+.+-....-++ .++..++.......
T Consensus 220 e~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~--~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~ 297 (652)
T KOG2376|consen 220 EEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN--PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFL 297 (652)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc--CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHH
Confidence 00000 11122233445566666666666666653 3333222 22221111111111 12222222111111
Q ss_pred ------------ccHHHHHHHHHhcCCHHHHHHHHHhcCCCC-eehHHHHHHHHH--HcCChHHHHHHHHHhhhCCCCcc
Q 005265 320 ------------VSETSMVSGYAKASSVKSARLMFTKMLERN-VVSWNALIAGYT--QNGENEEALGLFRLLKRESVCPT 384 (705)
Q Consensus 320 ------------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~ 384 (705)
..-+.++.. -.+..+.+.++....+... ...+.+++.... +...+.++.+++...-+....-.
T Consensus 298 l~~Ls~~qk~~i~~N~~lL~l--~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s 375 (652)
T KOG2376|consen 298 LSKLSKKQKQAIYRNNALLAL--FTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKS 375 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchh
Confidence 011112222 2344555666666665543 233444444332 22356777777776665432222
Q ss_pred hhhHHHHHHHHhhcccHHHHHHHHH--------HHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC--
Q 005265 385 HYTFGNLLNACANLADLQLGRQAHT--------HVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE-- 454 (705)
Q Consensus 385 ~~t~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 454 (705)
....-..++.....|+++.|.+++. .+.+.+ ..+.+..+++..|.+.++-+.|..++++...
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~--------~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK--------HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWW 447 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc--------cChhHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 3445555666788899999999988 444433 3455667788888888887777777765431
Q ss_pred ----CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHH
Q 005265 455 ----RDW----VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYF 515 (705)
Q Consensus 455 ----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 515 (705)
... ..|.-+...-.++|+.++|..+++++.+. -.+|..+...++.+|++. +++.|..+-
T Consensus 448 ~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 448 RKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred HHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 111 12222233333456666666666666652 123334555555555543 444554443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-08 Score=95.03 Aligned_cols=162 Identities=14% Similarity=0.113 Sum_probs=87.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHH
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCA 501 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~ 501 (705)
...+..+...|...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+....|. ...+..+...
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 34444444455555555555555544431 2334445555555556666666666666554322222 2244445555
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHH
Q 005265 502 CSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PM-QPDAVIWGSLLAACKVHRNIML 578 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~ 578 (705)
+...|++++|...++...+. .|+ ...+..+...+...|++++|...+++. .. +++...+..+...+...|+.+.
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA 221 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 66666666666666665432 232 445566666666666666666666655 22 2234455555555666677777
Q ss_pred HHHHHHHHHhhC
Q 005265 579 GEYVAKKLLEIE 590 (705)
Q Consensus 579 a~~~~~~~~~~~ 590 (705)
|....+.+.+..
T Consensus 222 a~~~~~~~~~~~ 233 (234)
T TIGR02521 222 AQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHhhC
Confidence 776666655543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-05 Score=81.31 Aligned_cols=583 Identities=12% Similarity=0.059 Sum_probs=334.4
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC---CChhhHHHHHHHHHhc
Q 005265 22 FAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN---KNVFTWNSIITGLLKW 98 (705)
Q Consensus 22 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 98 (705)
|...++ |-..+.+...++..+.+.+ +.+.+..+....--.+...|+.++|.+....-.. .+.+.|..+.-.+-..
T Consensus 11 F~~~lk-~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALK-CYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 444444 3356778888888888877 4455555555444455567888888887776554 4557788777777777
Q ss_pred CChhHHHHHHhcCC--CC-CcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHH
Q 005265 99 GFIDDASRLFASMP--ER-DQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHA 175 (705)
Q Consensus 99 g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 175 (705)
.++++|++.|.... +| |...|--+--.-++.|+++..........+..+ -....|..+..+..-.|+...|..+.+
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999998764 33 555666665566677888888777777776522 244567777777777888999999988
Q ss_pred HHHHcCC-CCChhhHHHHH------HHhhcCCChHHHHHHHhccCCC--Cc-chHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005265 176 LLSKSRY-SSDVYMGSALI------DMYGKCGRVSCARRVFDGMRER--NI-VSWNSLITCYEQNGPASDALEVFVRMMA 245 (705)
Q Consensus 176 ~~~~~g~-~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 245 (705)
...+... .|+...+.-.. ....+.|.++.|.+-+...... |- ..-.+-...+.+.+++++|..++..++.
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 8887652 45554443322 3445678888888877665431 22 2233455667888999999999999987
Q ss_pred CCCCCCHhHHHHHHHHHH-ccCChHHHH-HHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc-ccH
Q 005265 246 SGIEPDEVTLASVVSACA-SLAAFKEGL-QIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNV-VSE 322 (705)
Q Consensus 246 ~g~~p~~~t~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 322 (705)
. .||...|...+..+. +..+.-++. .+|...-+.. +........=++......-.+..-.++..+.+.++ ..+
T Consensus 248 r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf 323 (700)
T KOG1156|consen 248 R--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF 323 (700)
T ss_pred h--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchh
Confidence 4 588887777666554 233333333 5555444421 11111000000111111111112222222222221 122
Q ss_pred HHHHHHHHhcCCHHH----HHHHHHhc--------------CCCCeehHH--HHHHHHHHcCChHHHHHHHHHhhhCCCC
Q 005265 323 TSMVSGYAKASSVKS----ARLMFTKM--------------LERNVVSWN--ALIAGYTQNGENEEALGLFRLLKRESVC 382 (705)
Q Consensus 323 ~~li~~~~~~~~~~~----A~~~~~~~--------------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~ 382 (705)
..+..-|-.-...+- +..+...+ ..|....|. .++..|-..|+++.|..+++....+ .
T Consensus 324 ~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--T 401 (700)
T KOG1156|consen 324 KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--T 401 (700)
T ss_pred hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--C
Confidence 222222211111110 00111111 123444444 4678888999999999999988764 5
Q ss_pred cchh-hHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCC--h--
Q 005265 383 PTHY-TFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERD--W-- 457 (705)
Q Consensus 383 p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~-- 457 (705)
|+.+ -|..=.+.+...|+++.|...+....+.. .+|..+-.--+.-..+.++.++|.++.....+.+ .
T Consensus 402 PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-------~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~ 474 (700)
T KOG1156|consen 402 PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-------TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVN 474 (700)
T ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-------chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhh
Confidence 5543 33344467788899999999999988877 3777776677788888999999998887765432 1
Q ss_pred ------hHHHHH--HHHHHHcCChHHHHHHHHHHHHC--C---CCCChhh----------HHHHHHHHhccC-------c
Q 005265 458 ------VSWNAM--IVGCAQNGYGTEALGLFKKMLLC--G---EKPDHVT----------MIGVLCACSHAG-------L 507 (705)
Q Consensus 458 ------~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~--g---~~p~~~~----------~~~ll~~~~~~g-------~ 507 (705)
-.|-.+ ..+|.+.|++..|++-|..+-+. . -+-|-.| |.-++.-+-... -
T Consensus 475 ~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~A 554 (700)
T KOG1156|consen 475 NLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRA 554 (700)
T ss_pred hHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHH
Confidence 134444 45677888887777766655432 0 1222223 222332211111 1
Q ss_pred HHHHHHHHHHhHHhcCC-CCChhHHHHH----HHHHHhcC-ChHHHHHHHHhC--------------CCCCCHHHHHHHH
Q 005265 508 VEEGRKYFSSMSKEHGL-APLKDHYTCM----VDLLGRAG-CLDEAKTLIEAM--------------PMQPDAVIWGSLL 567 (705)
Q Consensus 508 ~~~a~~~~~~~~~~~~~-~p~~~~~~~l----~~~~~~~g-~~~~A~~~~~~~--------------~~~p~~~~~~~l~ 567 (705)
...|++++=.|...... .+.......+ -....++. +-..|.+--+.+ +..||... +.
T Consensus 555 a~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~~---~g 631 (700)
T KOG1156|consen 555 AKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDEDP---FG 631 (700)
T ss_pred HHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcc---hh
Confidence 23445555544332100 0111111111 11111111 111111111111 23344441 22
Q ss_pred HHHHh-cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 568 AACKV-HRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 568 ~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
..+.+ ..-.++|.+.+.......+.+...|..-..+|.+.|++.-+.+.++.....
T Consensus 632 ekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~ 688 (700)
T KOG1156|consen 632 EKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLALACLNNAEGI 688 (700)
T ss_pred hhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 22333 334577999999888889999999999999999999999999998887643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-09 Score=98.05 Aligned_cols=235 Identities=11% Similarity=0.055 Sum_probs=178.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHH
Q 005265 354 NALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLI 433 (705)
Q Consensus 354 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li 433 (705)
+.+..+|.+.|.+.+|.+.|+..++. .|-..||..+-.+|.+..++..|..++.+-.+.- +.++....-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-------P~~VT~l~g~A 297 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-------PFDVTYLLGQA 297 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-------CchhhhhhhhH
Confidence 45667777777777777777776664 4555567777777777777777777777666554 35555555666
Q ss_pred HHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHH
Q 005265 434 DMYMKCGSVEDGCRIFETMVER---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEE 510 (705)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 510 (705)
..+...++.++|.++++...+. ++.+.-.+..+|.-.++++-|+.+|+++++.|+. +...|..+.-+|...+.+|-
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 7777788888888888877643 5556666677888889999999999999998865 45567777778888999999
Q ss_pred HHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005265 511 GRKYFSSMSKEHGLAPL--KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKL 586 (705)
Q Consensus 511 a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 586 (705)
++.-|++...- .-.|+ ..+|..|.......|++.-|.+.|+-. ...| ....++.|.-.-.+.|++++|..++..+
T Consensus 377 ~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 99988887643 33455 678888888889999999999999877 2334 4668888888888999999999999999
Q ss_pred HhhCCCCCchHHH
Q 005265 587 LEIEPSNSGPYVL 599 (705)
Q Consensus 587 ~~~~p~~~~~~~~ 599 (705)
....|+-.....+
T Consensus 456 ~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 456 KSVMPDMAEVTTN 468 (478)
T ss_pred hhhCccccccccc
Confidence 9888876544333
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8e-08 Score=98.23 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=64.5
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEH-----GLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM--------PMQPD 559 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~ 559 (705)
+++.+...+.+.|++++|.++|+.+++.. +..+. ...++.|...|.+.++..+|.++|.+. +..|+
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 56666666666666666666666655432 11222 445666777777777777777777664 23344
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005265 560 -AVIWGSLLAACKVHRNIMLGEYVAKKLLE 588 (705)
Q Consensus 560 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 588 (705)
..+|..|...|...|+++.|+++.+.+..
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 45788999999999999999999998874
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-06 Score=86.53 Aligned_cols=226 Identities=12% Similarity=0.076 Sum_probs=136.4
Q ss_pred CCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHH
Q 005265 163 GSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE---RNIVSWNSLITCYEQNGPASDALEV 239 (705)
Q Consensus 163 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 239 (705)
..+++..+.++.+.+++. .+....+.....-.+...|+.++|......-.. .+.+.|..+.-.+-...++++|+..
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 455666667777766663 222333333333345567888888887766554 4556788888777788889999999
Q ss_pred HHHHHHCCCCCCH-hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--
Q 005265 240 FVRMMASGIEPDE-VTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPI-- 316 (705)
Q Consensus 240 ~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 316 (705)
|+..... .||. ..+.-+.-.-++.++++.....-....+. .+.....|..+..++--.|+...|..++++...
T Consensus 98 y~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 98 YRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9988874 4543 44544444445667777777666666664 244556777777788888888888887766542
Q ss_pred ---CCcccHHHH------HHHHHhcCCHHHHHHHHHhcCCC--Ceeh-HHHHHHHHHHcCChHHHHHHHHHhhhCCCCcc
Q 005265 317 ---RNVVSETSM------VSGYAKASSVKSARLMFTKMLER--NVVS-WNALIAGYTQNGENEEALGLFRLLKRESVCPT 384 (705)
Q Consensus 317 ---~~~~~~~~l------i~~~~~~~~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 384 (705)
++...+.-. .....+.|..+.|.+.+...... |-.. -.+-...+.+.++.++|..++..++.. .||
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 222222211 12334556666666655544322 2122 223345566677777777777777664 366
Q ss_pred hhhHHHHHHHH
Q 005265 385 HYTFGNLLNAC 395 (705)
Q Consensus 385 ~~t~~~ll~~~ 395 (705)
..-|.-.+..+
T Consensus 252 n~~Yy~~l~~~ 262 (700)
T KOG1156|consen 252 NLDYYEGLEKA 262 (700)
T ss_pred hHHHHHHHHHH
Confidence 55555444443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-08 Score=99.03 Aligned_cols=213 Identities=14% Similarity=0.075 Sum_probs=151.4
Q ss_pred cHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHH
Q 005265 400 DLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEA 476 (705)
Q Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 476 (705)
..+.+..-+.+++..... ..+.....|..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|
T Consensus 41 ~~e~~i~~~~~~l~~~~~---~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 41 QQEVILARLNQILASRDL---TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred HHHHHHHHHHHHHccccC---CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 444555555555533210 0012245677888899999999999999998763 3678999999999999999999
Q ss_pred HHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 005265 477 LGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM- 554 (705)
Q Consensus 477 ~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 554 (705)
...|++.++ +.|+. .++..+..++...|++++|.+.|+...+. .|+..........+...++.++|...|++.
T Consensus 118 ~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999998 67865 57788888889999999999999988754 565332222233455678899999999764
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 555 -PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLL-------EIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 555 -~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
...|+...| .+ .....|+...+ ..++.+. ++.|+...+|..++.++.+.|++++|+..|++..+..
T Consensus 193 ~~~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKLDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhCCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 223333222 22 22334555443 2444443 4566677789999999999999999999999998644
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.3e-06 Score=89.34 Aligned_cols=294 Identities=14% Similarity=0.041 Sum_probs=161.2
Q ss_pred cccHHHHHHHHHh--------cCCHHHHHHHHHhcCC---CCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhh
Q 005265 319 VVSETSMVSGYAK--------ASSVKSARLMFTKMLE---RNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYT 387 (705)
Q Consensus 319 ~~~~~~li~~~~~--------~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 387 (705)
..+|..++..|.+ ..+...|...+.+.++ .+..+||.|.-. ...|.+.-|...|-+-.... +.+..+
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~ 852 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQ 852 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhh
Confidence 4556555544433 1222355566655533 456667766544 44456665655555444321 334556
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHcc-----C---CCChhH
Q 005265 388 FGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETM-----V---ERDWVS 459 (705)
Q Consensus 388 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~---~~~~~~ 459 (705)
|..+--.|....+++.|.+.|....... +.+...|-.....-...|+.-++..+|..- . -++..-
T Consensus 853 W~NlgvL~l~n~d~E~A~~af~~~qSLd-------P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Y 925 (1238)
T KOG1127|consen 853 WLNLGVLVLENQDFEHAEPAFSSVQSLD-------PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQY 925 (1238)
T ss_pred eeccceeEEecccHHHhhHHHHhhhhcC-------chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhH
Confidence 6666666677778888888887776655 345555544444445566666777766541 1 123334
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC--------CCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 005265 460 WNAMIVGCAQNGYGTEALGLFKKMLLC--------GEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDH 530 (705)
Q Consensus 460 ~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 530 (705)
|-....-...+|+.++-+...+++-.. +-.|+ .+.|.......-+.+.++.|.+...+...-...+-+...
T Consensus 926 w~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sq 1005 (1238)
T KOG1127|consen 926 WLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQ 1005 (1238)
T ss_pred HHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 443333444555555444333332211 12333 356777776677777777766665554322222334444
Q ss_pred HHH----HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc---hHHHHHHH
Q 005265 531 YTC----MVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG---PYVLLSNM 603 (705)
Q Consensus 531 ~~~----l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~ 603 (705)
|+. ....+...|.++.|..-+...+...|..+...-+.. .-.++++++.+.|++++.+..++.. ....++..
T Consensus 1006 ynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~ 1084 (1238)
T KOG1127|consen 1006 YNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVC 1084 (1238)
T ss_pred hhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHH
Confidence 443 344556677777777666655444444444433333 3457788888888888877433332 23445555
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 005265 604 YAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 604 ~~~~g~~~~A~~~~~~~~~ 622 (705)
....+.-+.|...+-+...
T Consensus 1085 ~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1085 MGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HhhcccchHHHHHHHHHHH
Confidence 6666777777776666554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-06 Score=87.92 Aligned_cols=255 Identities=16% Similarity=0.161 Sum_probs=157.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcc-hhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHH
Q 005265 352 SWNALIAGYTQNGENEEALGLFRLLKRESVCPT-HYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGN 430 (705)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (705)
++.-+...|...|++++|+.+.++.++. .|+ ...|..-...+-+.|++.+|.+.++.+..... .|..+-+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-------~DRyiNs 266 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-------ADRYINS 266 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-------hhHHHHH
Confidence 3455678888999999999999998875 455 44677777888899999999999999998874 7888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCCCh----------hHH--HHHHHHHHHcCChHHHHHHHHHHHHC--CCCCChh---
Q 005265 431 SLIDMYMKCGSVEDGCRIFETMVERDW----------VSW--NAMIVGCAQNGYGTEALGLFKKMLLC--GEKPDHV--- 493 (705)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~--- 493 (705)
..+..+.++|++++|.+++.....++. ..| .....+|.+.|++..|++.|..+.+. .+.-|..
T Consensus 267 K~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH 346 (517)
T PF12569_consen 267 KCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFH 346 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 889999999999999999888775541 133 34567899999999998877766552 1222222
Q ss_pred ----------hHHHHHHHHhccC-------cHHHHHHHHHHhHHhcCCCCCh-----------hHHHHHHHHH---HhcC
Q 005265 494 ----------TMIGVLCACSHAG-------LVEEGRKYFSSMSKEHGLAPLK-----------DHYTCMVDLL---GRAG 542 (705)
Q Consensus 494 ----------~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~p~~-----------~~~~~l~~~~---~~~g 542 (705)
+|..+++..-+.. -...|.+++-.+.......... .--..+-.-. .+..
T Consensus 347 ~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~ 426 (517)
T PF12569_consen 347 SYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKA 426 (517)
T ss_pred HHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHH
Confidence 2333332221111 1123333333332210000000 0000000000 0111
Q ss_pred ChHHHHHHHH-----------hC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 543 CLDEAKTLIE-----------AM------PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 543 ~~~~A~~~~~-----------~~------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
.-+++...-. .. +..||+.-- .|+ ....=+++|.+.++-+.+..|++..+|..-..+|.
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~Ge-kL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~ 502 (517)
T PF12569_consen 427 KKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGE-KLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYL 502 (517)
T ss_pred hHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHH-HHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHH
Confidence 1111111100 00 112222211 111 23345688999999999999999999999999999
Q ss_pred hcCChhHHHHHHHH
Q 005265 606 ELGRWGEVVRVRKL 619 (705)
Q Consensus 606 ~~g~~~~A~~~~~~ 619 (705)
+.|++-.|++.+.+
T Consensus 503 Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 503 RKGKYLLALQALKK 516 (517)
T ss_pred hcCcHHHHHHHHHh
Confidence 99999999887754
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-07 Score=91.61 Aligned_cols=216 Identities=11% Similarity=-0.035 Sum_probs=150.8
Q ss_pred CChHHHHHHHHHhhhCC-CCcc--hhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcC
Q 005265 364 GENEEALGLFRLLKRES-VCPT--HYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCG 440 (705)
Q Consensus 364 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 440 (705)
+..+.++.-+.+++... ..|+ ...|......+...|+.+.|...|...++.. +.+...|+.+...|...|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-------PDMADAYNYLGIYLTQAG 112 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHCC
Confidence 45566777777766432 2222 2345555666777888888888888888776 467889999999999999
Q ss_pred CHHHHHHHHHccCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHH
Q 005265 441 SVEDGCRIFETMVE--R-DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSS 517 (705)
Q Consensus 441 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 517 (705)
++++|...|++..+ | +..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|+.
T Consensus 113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999999998853 3 567888888899999999999999999998 567654322222334567789999999976
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCChHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 518 MSKEHGLAPLKDHYTCMVDLLGRAGCLDE--AKTLIEAM-PM----QP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 518 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
.... ..|+...+ .+.. ...|+..+ +.+.+.+. .. .| ....|..+...+.+.|++++|...|+++++.
T Consensus 191 ~~~~--~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEK--LDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhh--CCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5432 23433222 2333 33455433 33333322 11 12 3457888999999999999999999999999
Q ss_pred CCCC
Q 005265 590 EPSN 593 (705)
Q Consensus 590 ~p~~ 593 (705)
+|.+
T Consensus 266 ~~~~ 269 (296)
T PRK11189 266 NVYN 269 (296)
T ss_pred CCch
Confidence 9754
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-06 Score=81.22 Aligned_cols=298 Identities=14% Similarity=0.088 Sum_probs=163.2
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHH---HHHHhcCCHHHHHHHHHhcCCCCeehHHHHH---HHHHHcCCh
Q 005265 293 ALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMV---SGYAKASSVKSARLMFTKMLERNVVSWNALI---AGYTQNGEN 366 (705)
Q Consensus 293 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~ 366 (705)
.+...+...|++..|+.-|....+-|+..|.++. ..|...|+...|..-+.+..+..+..+.+-+ ..+.+.|.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 3445555566666666666666666655555543 2455566666666666666443333333332 346677777
Q ss_pred HHHHHHHHHhhhCCCCcch--------------hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHH
Q 005265 367 EEALGLFRLLKRESVCPTH--------------YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSL 432 (705)
Q Consensus 367 ~~A~~~~~~m~~~g~~p~~--------------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 432 (705)
++|..-|+..+......+. ......+..+...|+...+......+++.. +.+...+..-
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-------~Wda~l~~~R 195 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-------PWDASLRQAR 195 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-------cchhHHHHHH
Confidence 7777777777665321110 012223344455677777777777777765 3677777777
Q ss_pred HHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHH
Q 005265 433 IDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVE 509 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 509 (705)
..+|...|++..|+.-++... ..+....--+-..+...|+.+.++...++-++ +.||....-..- ..+.
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~Y------Kklk 267 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFY------KKLK 267 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHH------HHHH
Confidence 888888888888876665543 44566666666777777887777777777766 667764211110 1111
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--H---HHHHHHHHHHHhcCCHHHHHHHH
Q 005265 510 EGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD--A---VIWGSLLAACKVHRNIMLGEYVA 583 (705)
Q Consensus 510 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~---~~~~~l~~~~~~~g~~~~a~~~~ 583 (705)
+..+.++.|. ...+.++|.++++-.+.. ...|. . ..+..+..+++..|++.+|++..
T Consensus 268 Kv~K~les~e-----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 268 KVVKSLESAE-----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred HHHHHHHHHH-----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 1111122111 112233344444333332 22232 1 12222333344555566666666
Q ss_pred HHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 584 KKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 584 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.++++++|++..++..-+.+|.-...|++|+.-|++..+
T Consensus 331 ~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 666666666555555566666655566666665555544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-06 Score=84.60 Aligned_cols=216 Identities=17% Similarity=0.119 Sum_probs=152.4
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChh---------
Q 005265 388 FGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWV--------- 458 (705)
Q Consensus 388 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------- 458 (705)
...+.++..+..+++.+.+.+....... .++.-++....+|...|........-....+....
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIa 298 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIA 298 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHH
Confidence 3445566666677888888877776653 35555666777788888777766665554433211
Q ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHH
Q 005265 459 -SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLK-DHYTCMVD 536 (705)
Q Consensus 459 -~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~ 536 (705)
+...+..+|.+.++++.|+..|++.+.....||.. .+....+++....... .-+.|.. .-.-.-..
T Consensus 299 k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~---a~~~pe~A~e~r~kGn 366 (539)
T KOG0548|consen 299 KALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERK---AYINPEKAEEEREKGN 366 (539)
T ss_pred HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHH---HhhChhHHHHHHHHHH
Confidence 22224456777788999999999987765555432 2233444554444433 1344542 22222366
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHH
Q 005265 537 LLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVV 614 (705)
Q Consensus 537 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 614 (705)
.+.+.|++.+|+..|.++ ...| |...|..-..+|.+.|.+..|.+-.+..++++|+....|..-+.++....+|++|.
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999988 3445 67788888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 005265 615 RVRKLMRKR 623 (705)
Q Consensus 615 ~~~~~~~~~ 623 (705)
+.|++.++.
T Consensus 447 eay~eale~ 455 (539)
T KOG0548|consen 447 EAYQEALEL 455 (539)
T ss_pred HHHHHHHhc
Confidence 999887753
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.3e-06 Score=89.35 Aligned_cols=307 Identities=11% Similarity=-0.033 Sum_probs=174.4
Q ss_pred HHHHHHHhhCC---CCCcccHHHHHHHHHhcCCHHHHHHHHHhc---CCCCeehHHHHHHHHHHcCChHHHHHHHHHhhh
Q 005265 305 NEARCVFDRMP---IRNVVSETSMVSGYAKASSVKSARLMFTKM---LERNVVSWNALIAGYTQNGENEEALGLFRLLKR 378 (705)
Q Consensus 305 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 378 (705)
..|...+.+.. ..+...|+.|.-. ...|++.-|.--|-+- .+....+|..+...+.++.+++.|...|...+.
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 35666666544 4566777776554 5556666666666544 234667888888888899999999999988876
Q ss_pred CCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC-----
Q 005265 379 ESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV----- 453 (705)
Q Consensus 379 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----- 453 (705)
.. +.|...+..........|+.-+...+|..--.... ..+.-+...-+-+........|+.++-+..-+.+.
T Consensus 879 Ld-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~--~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 879 LD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCS--KEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred cC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc--cccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 43 23444454444444555666666666655222111 01113444444444444555666655554444432
Q ss_pred --------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhhHHHH----HHHHhccCcHHHHHHHHHHhHH
Q 005265 454 --------ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLC-GEKPDHVTMIGV----LCACSHAGLVEEGRKYFSSMSK 520 (705)
Q Consensus 454 --------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l----l~~~~~~g~~~~a~~~~~~~~~ 520 (705)
..+...|.+.....-+.+.+..|.++..+.+.- ..+-|..+|+.+ .+.+...|.++.|...+.....
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ 1035 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM 1035 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch
Confidence 125567777777777888888888887775431 123344444432 2334445566655443332110
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 521 EHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM----PMQPDAV-IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 521 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
..+......-+. ..-.|+++++.+.|+++ ....|.+ ....++.+....+..+.|...+-+.....|.+..
T Consensus 1036 ----evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~ 1110 (1238)
T KOG1127|consen 1036 ----EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQAS 1110 (1238)
T ss_pred ----hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchh
Confidence 111111111111 13367888888888887 2233433 3344444556677778888888888888777777
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHH
Q 005265 596 PYVLLSNMYAELGRWGEVVRVRKLM 620 (705)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~~~ 620 (705)
....|.-++.-..+-.....+.+++
T Consensus 1111 sll~L~A~~ild~da~~ssaileel 1135 (1238)
T KOG1127|consen 1111 SLLPLPAVYILDADAHGSSAILEEL 1135 (1238)
T ss_pred hHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 7777766665555444444444444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-08 Score=99.36 Aligned_cols=219 Identities=16% Similarity=0.107 Sum_probs=177.4
Q ss_pred hhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCC
Q 005265 396 ANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGY 472 (705)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 472 (705)
.+.|++.+|.-.|+..++.. +.+...|.-|.-.....++-..|+..+.+..+ .|......|...|...|.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-------PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 46677888888888888776 47888999999999999998899988888764 367788888889999999
Q ss_pred hHHHHHHHHHHHHCCCC-----C---ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh
Q 005265 473 GTEALGLFKKMLLCGEK-----P---DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCL 544 (705)
Q Consensus 473 ~~~A~~~~~~m~~~g~~-----p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 544 (705)
-.+|++.++.-+....+ + +..+-.. .............++|-++....+..+|+.+..+|.-.|--.|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999999998763210 0 1100000 222333445566677777766667678899999999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 545 DEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 545 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
++|.+.|+.+ .++| |...||-|...+....+.++|+..|.+++++.|.-..+...|+-.|...|.|+||.+.|=....
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999998 6677 6778999999999999999999999999999999999999999999999999999999987765
Q ss_pred C
Q 005265 623 R 623 (705)
Q Consensus 623 ~ 623 (705)
.
T Consensus 527 m 527 (579)
T KOG1125|consen 527 M 527 (579)
T ss_pred h
Confidence 3
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.7e-07 Score=78.85 Aligned_cols=194 Identities=14% Similarity=0.080 Sum_probs=138.8
Q ss_pred HHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHH
Q 005265 392 LNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCA 468 (705)
Q Consensus 392 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 468 (705)
.-.|...|+...|+.-++++++.. +.+..++..+...|.+.|..+.|.+-|++.. ..+-...|....-+|
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~D-------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHD-------PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 344555666666666666666655 4566777778888888888888888887765 235567777777788
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHH
Q 005265 469 QNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDE 546 (705)
Q Consensus 469 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 546 (705)
..|++++|...|++....-.-|.. .||..+.-+..+.|+.+.|.++|++..+ ..|+ ......+.+...+.|++..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchH
Confidence 888888888888888775433333 4677777777788888888888887653 3555 6667777888888888888
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 547 AKTLIEAM--PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 547 A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
|..+++.. ...++..+..-.+..-...||.+.+.+.-.++....|....
T Consensus 192 Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 192 ARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 88888776 23466666666666677788888888887777777887654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=0.00022 Score=74.45 Aligned_cols=247 Identities=13% Similarity=0.132 Sum_probs=120.8
Q ss_pred CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCc---
Q 005265 349 NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESD--- 425 (705)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 425 (705)
|+...+.-..-++...++++|..++-..++ |...+..|...+ ..-..++-+.|.-.. +..|+
T Consensus 1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~K-----d~~~~e~~ 1143 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTK-----DDMPNEQE 1143 (1416)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCc-----CCCccHHH
Confidence 555566666777788888888888765543 333444443332 222222323332110 00233
Q ss_pred -HhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHH---------H----HHHHHHCCCCCC
Q 005265 426 -IFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALG---------L----FKKMLLCGEKPD 491 (705)
Q Consensus 426 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~---------~----~~~m~~~g~~p~ 491 (705)
..+...+.+.+.+.|.+..|-+-|-+.-.+ -..+.++.+.|+.++..- + -+-++....+-|
T Consensus 1144 R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK-----l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~ 1218 (1416)
T KOG3617|consen 1144 RKQVLEQVAELCLQQGAYHAATKKFTQAGDK-----LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDN 1218 (1416)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHhhhhhH-----HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccC
Confidence 245566778888888888888777654321 112445555555443110 0 011112223444
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH-HHHHHH----
Q 005265 492 HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDA-VIWGSL---- 566 (705)
Q Consensus 492 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l---- 566 (705)
+.+...++.-|.+...++.--.+++...+ .....|..+-. ..|-+++|-+.+.++..+.+. ..+++|
T Consensus 1219 pq~mK~I~tFYTKgqafd~LanFY~~cAq-----iEiee~q~ydK---a~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~ 1290 (1416)
T KOG3617|consen 1219 PQTMKDIETFYTKGQAFDHLANFYKSCAQ-----IEIEELQTYDK---AMGALEEAAKCLLKAEQKNMSTTGLDALQEDL 1290 (1416)
T ss_pred hHHHhhhHhhhhcchhHHHHHHHHHHHHH-----hhHHHHhhhhH---HhHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 45555555445444434333333332211 11111111111 123445555555555322221 122222
Q ss_pred ------HHHHHh-cCCHHHHHHHHHHHHhhCCCCC------chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 567 ------LAACKV-HRNIMLGEYVAKKLLEIEPSNS------GPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 567 ------~~~~~~-~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
+..... ..|..+.++-...+++. |..+ ..|..|+..|....+|..|.+.++.|..+-
T Consensus 1291 a~vk~~l~~~q~~~eD~~~~i~qc~~llee-p~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1291 AKVKVQLRKLQIMKEDAADGIRQCTTLLEE-PILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhC-cCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 222111 12445555555555443 3222 357788999999999999999999998653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.81 E-value=5e-06 Score=86.41 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=78.8
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAAC 570 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 570 (705)
++..+...|...|++++|+++.+..+. ..|+ +..|..-...|-+.|++++|.+.++.. .+.+ |-..-+-....+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 334445566677777777777776653 3565 667777777777777777777777776 3333 344444455556
Q ss_pred HhcCCHHHHHHHHHHHHhhC--CCCC-------chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 571 KVHRNIMLGEYVAKKLLEIE--PSNS-------GPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~--p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+.|++++|++.+......+ |... -...--+.+|.+.|++..|++-+..+.+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 67777777777777665443 1110 0123456677778888877776665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-05 Score=72.24 Aligned_cols=401 Identities=12% Similarity=0.081 Sum_probs=210.9
Q ss_pred hHHHHHHHhhcCCChHHHHHHHhccCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHH-HHHHHH
Q 005265 188 MGSALIDMYGKCGRVSCARRVFDGMRER---NIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLAS-VVSACA 263 (705)
Q Consensus 188 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~ 263 (705)
-+++.+..+.+..++++|++++..-.++ +....+.|..+|....++..|-+.|+.+-. ..|...-|.. -...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHH
Confidence 3555666666777788888777665543 344567777777777888888888877765 3454444432 234455
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCChhHHHHHH----HHHHhcCChHHHHHHHhhCCC-CCcccHHHHHHHHHhcCCHHHH
Q 005265 264 SLAAFKEGLQIHARLMRCEKLRNDLVLGNALV----DMYAKCGKLNEARCVFDRMPI-RNVVSETSMVSGYAKASSVKSA 338 (705)
Q Consensus 264 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A 338 (705)
+.+.+..|+++...+... ....+..+ ......+++..+..++++.+. .+..+.+...-...+.|+.+.|
T Consensus 90 ~A~i~ADALrV~~~~~D~------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC------HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHH
Confidence 666777777766654332 11111111 112335666666666666652 3444444444444556666666
Q ss_pred HHHHHhcCCC----CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhh----HHHHHHHHhhcccHHHHHHHHHH
Q 005265 339 RLMFTKMLER----NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYT----FGNLLNACANLADLQLGRQAHTH 410 (705)
Q Consensus 339 ~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~ 410 (705)
.+-|+...+- ....||.. .++.+.++++.|+++..++.+.|++..+.. -+-.+++-. .|+ ...++.
T Consensus 164 vqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgN---t~~lh~- 237 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGN---TLVLHQ- 237 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccc---hHHHHH-
Confidence 6666655431 23344432 333455556666666666666554322210 000000000 000 000000
Q ss_pred HHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005265 411 VVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER-----DWVSWNAMIVGCAQNGYGTEALGLFKKMLL 485 (705)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 485 (705)
+ .-+..+|.-...+.+.|+.+.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-++-+++
T Consensus 238 ---S---------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 238 ---S---------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ 304 (459)
T ss_pred ---H---------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh
Confidence 0 00122233334567889999999999999854 777766553221 24556666666666666
Q ss_pred CCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-CCChhHHHHHHHHHH-hcCChHHHHHHHHhCCCCCCHHH
Q 005265 486 CGEKP-DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGL-APLKDHYTCMVDLLG-RAGCLDEAKTLIEAMPMQPDAVI 562 (705)
Q Consensus 486 ~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~ 562 (705)
. .| ...||..++-.|++..-++.|-.++.+-... .. -.+...|+ |++++. -.-..++|.+-++.....--...
T Consensus 305 ~--nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kL 380 (459)
T KOG4340|consen 305 Q--NPFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKL 380 (459)
T ss_pred c--CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3 44 3469999999999999999888887633110 00 11223333 333333 33456666665554410000000
Q ss_pred HHHHHHH-HHhcCC----HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 563 WGSLLAA-CKVHRN----IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 563 ~~~l~~~-~~~~g~----~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
-...+.. -.++.+ ...+.+-|++.+++-- .+....+++|.+..++.-+.++|+.-.+
T Consensus 381 RklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 381 RKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 0000111 111111 1233444555554421 2356778889999999999999987654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-05 Score=83.25 Aligned_cols=235 Identities=14% Similarity=0.138 Sum_probs=142.2
Q ss_pred CChhhHHHHH--HHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHC-C--------CCCCH
Q 005265 184 SDVYMGSALI--DMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMAS-G--------IEPDE 252 (705)
Q Consensus 184 ~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~ 252 (705)
-|..+..+++ +.|.--|+++.|.+-.+.+. +-..|..|.+.|.+..+.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 3566666666 45677788888877666554 3456888888888888777776666555431 1 1122
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC-CcccHHHHHHHHHh
Q 005265 253 VTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIR-NVVSETSMVSGYAK 331 (705)
Q Consensus 253 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~ 331 (705)
.+-.-+.-.....|.+++|..+|++..+.. .|=..|-..|.+++|.++-+.-..- =-.+|.....-+-.
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 222222223346688888888888876643 3445566778888888766543221 12356666666667
Q ss_pred cCCHHHHHHHHHhcCCC-----------------------CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhH
Q 005265 332 ASSVKSARLMFTKMLER-----------------------NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTF 388 (705)
Q Consensus 332 ~~~~~~A~~~~~~~~~~-----------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 388 (705)
.++.+.|++.|++...+ |...|.=...-+-..|+.+.|+.+|..... |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 77788777777765221 222333333334445666666666665443 3
Q ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHcc
Q 005265 389 GNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETM 452 (705)
Q Consensus 389 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 452 (705)
-++++..|-.|+.++|-++-++ ..|......|...|...|++.+|...|-+.
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~e------------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEE------------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHh------------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3445555666777766665543 345555666777777777777777777654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.79 E-value=3e-07 Score=88.79 Aligned_cols=145 Identities=14% Similarity=0.085 Sum_probs=73.2
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh---HHHHHHHHHHhcCChH
Q 005265 469 QNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKD---HYTCMVDLLGRAGCLD 545 (705)
Q Consensus 469 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~ 545 (705)
..|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+ +..|.. ...+.+..+.-...+.
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhHH
Confidence 345555555544321 2233334444455555555555555555531 222211 1111222222223466
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 005265 546 EAKTLIEAM--PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRW-GEVVRVRKLMRK 622 (705)
Q Consensus 546 ~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 622 (705)
+|..+|+++ ...+++.+.+.+..++...|++++|+++++++++.+|.++.+..+++.+....|+. +.+.+.+.+++.
T Consensus 185 ~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 185 DAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666666665 22355666666666666677777777777776666777666666666666666666 445566666553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.3e-07 Score=86.13 Aligned_cols=227 Identities=14% Similarity=0.088 Sum_probs=147.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHH
Q 005265 353 WNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSL 432 (705)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 432 (705)
...+.+++...|+++.++ .+..... .|.......+...+....+-+.+..-+......... ..+..+....
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~-----~~~~~~~~~~ 108 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAG-----ESNEIVQLLA 108 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS--------CHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccc-----cccHHHHHHH
Confidence 344567777778766544 3333322 555555555544444433333333333322222210 2344444444
Q ss_pred HHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCcH
Q 005265 433 IDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSH----AGLV 508 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~ 508 (705)
..++...|++++|++++... .+....-..+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. .+.+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhH
Confidence 56677889999999988776 5566666778899999999999999999987 44444 44445554432 3468
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 005265 509 EEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNI-MLGEYVAKK 585 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 585 (705)
.+|.-+|+++... ..+++.+.+.+..+....|++++|.+++++. ...| |+.++..++-.+...|+. +.+.+...+
T Consensus 184 ~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 9999999998654 4577888999999999999999999998886 4444 566777788877888887 778889999
Q ss_pred HHhhCCCCCc
Q 005265 586 LLEIEPSNSG 595 (705)
Q Consensus 586 ~~~~~p~~~~ 595 (705)
+....|+++.
T Consensus 262 L~~~~p~h~~ 271 (290)
T PF04733_consen 262 LKQSNPNHPL 271 (290)
T ss_dssp CHHHTTTSHH
T ss_pred HHHhCCCChH
Confidence 9889998753
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-05 Score=71.69 Aligned_cols=238 Identities=13% Similarity=0.090 Sum_probs=123.4
Q ss_pred cCCChHHHHHHHhccC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHH
Q 005265 198 KCGRVSCARRVFDGMR-ERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHA 276 (705)
Q Consensus 198 ~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 276 (705)
..+++..+..+.++.+ +.+..+.+.......+.|+++.|++-|+...+-|---....|+..+.. .+.++.+.|++...
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iS 202 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHIS 202 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHH
Confidence 4566677777777776 355555555555566777777777777776664322233455544433 35567777777777
Q ss_pred HHHHcCCCCCChhHH----HHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCC----
Q 005265 277 RLMRCEKLRNDLVLG----NALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLER---- 348 (705)
Q Consensus 277 ~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---- 348 (705)
++++.| +...+..- .-.+++-.-.+-...+..-+ +..+|.-...+.+.++.+.|.+.+-.|+.+
T Consensus 203 EIieRG-~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~e 274 (459)
T KOG4340|consen 203 EIIERG-IRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEE 274 (459)
T ss_pred HHHHhh-hhcCCccCccceeccCchhcccchHHHHHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCCCccccc
Confidence 777665 33222110 00000000000000000000 011222233355677777777877777653
Q ss_pred -CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHh
Q 005265 349 -NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIF 427 (705)
Q Consensus 349 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 427 (705)
|++|...+.-.- -.+++.+..+-+.-+...+. -...||..++-.||+..-++.|-.++.+-...-.. -.+..
T Consensus 275 lDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk-----~L~~Y 347 (459)
T KOG4340|consen 275 LDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYK-----FLTPY 347 (459)
T ss_pred CCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHH-----HhhHH
Confidence 667765544322 23455555555555555533 34568888888899988888888777543222111 12334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHc
Q 005265 428 VGNSLIDMYMKCGSVEDGCRIFET 451 (705)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~ 451 (705)
.|+.|=......-.+++|.+-++.
T Consensus 348 ly~LLdaLIt~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 348 LYDLLDALITCQTAPEEAFKKLDG 371 (459)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHH
Confidence 444332222333455666555544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3e-05 Score=77.12 Aligned_cols=245 Identities=12% Similarity=0.020 Sum_probs=162.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHH--
Q 005265 353 WNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGN-- 430 (705)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-- 430 (705)
.-.+..+.-+..++..|++.+....+.. -+..-++..-.++...|........-...++.|. ....-|+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-------e~rad~klI 297 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-------ELRADYKLI 297 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-------HHHHHHHHH
Confidence 3446666667777888888887777654 3333444555566777777766666666665553 2222222
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHccCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHH
Q 005265 431 -----SLIDMYMKCGSVEDGCRIFETMVER--DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV-TMIGVLCAC 502 (705)
Q Consensus 431 -----~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~ 502 (705)
.+..+|.+.++++.|+..|.+...+ +... ..+....++++.......- +.|... -...-...+
T Consensus 298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~ 368 (539)
T KOG0548|consen 298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEA 368 (539)
T ss_pred HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHH
Confidence 2344677788899999999886532 2222 2223344555555555444 445542 223335667
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHH
Q 005265 503 SHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAV-IWGSLLAACKVHRNIMLG 579 (705)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a 579 (705)
.+.|++..|+..+.++++. .|+ ...|....-+|.+.|.+..|++=.+.. ...|+.. .|.-=..++....+++.|
T Consensus 369 Fk~gdy~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkA 445 (539)
T KOG0548|consen 369 FKKGDYPEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKA 445 (539)
T ss_pred HhccCHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998865 354 889999999999999999999877766 4566543 455555556677899999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHH
Q 005265 580 EYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRK 618 (705)
Q Consensus 580 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 618 (705)
.+.|.+.++.+|++......+..++..+.......++.+
T Consensus 446 leay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 446 LEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 999999999999998877777777665433333344433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-06 Score=83.25 Aligned_cols=181 Identities=11% Similarity=0.005 Sum_probs=124.8
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh---
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE--R-DW---VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV--- 493 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--- 493 (705)
+.....+..+...+.+.|+++.|...|+++.. | +. .+|..+..++...|++++|+..++++.+ ..|+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchH
Confidence 45666777788888888888888888887753 2 22 3567777888888888888888888887 445433
Q ss_pred -hHHHHHHHHhcc--------CcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH
Q 005265 494 -TMIGVLCACSHA--------GLVEEGRKYFSSMSKEHGLAPLK-DHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIW 563 (705)
Q Consensus 494 -~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 563 (705)
++..+..++... |++++|.+.++.+.+. .|+. ..+..+.... ...... ....
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~-----------~~~~ 169 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL-----------AGKE 169 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH-----------HHHH
Confidence 344444455443 6778888888877654 3442 2222221110 011000 0011
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNS---GPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
..+...+...|++++|...++++++..|+++ ..+..++.++.+.|++++|..+++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455668899999999999999999977654 57899999999999999999999888754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00043 Score=69.11 Aligned_cols=175 Identities=14% Similarity=0.089 Sum_probs=127.4
Q ss_pred hHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHH
Q 005265 366 NEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDG 445 (705)
Q Consensus 366 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 445 (705)
.+.....+++++..-..--..+|...++...+...++.|+.+|.++.+.+.. ..++.++++++..||. ++.+-|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~-----~hhVfVa~A~mEy~cs-kD~~~A 420 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT-----RHHVFVAAALMEYYCS-KDKETA 420 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC-----cchhhHHHHHHHHHhc-CChhHH
Confidence 4556666666665432333456778888888889999999999999988772 2388899999998874 678899
Q ss_pred HHHHHccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005265 446 CRIFETMVER---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH--VTMIGVLCACSHAGLVEEGRKYFSSMSK 520 (705)
Q Consensus 446 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (705)
.++|+--.++ ++.--...+.-+...++-..|..+|++.+..++.||. ..|..+|.-=+.-|+...+.++-+++..
T Consensus 421 frIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 421 FRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999876532 3444456677778888889999999999988777776 4889999888889999998888887765
Q ss_pred hcC--CCCChhHHHHHHHHHHhcCChHH
Q 005265 521 EHG--LAPLKDHYTCMVDLLGRAGCLDE 546 (705)
Q Consensus 521 ~~~--~~p~~~~~~~l~~~~~~~g~~~~ 546 (705)
.+. ..|....-..+++.|.-.+....
T Consensus 501 af~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 501 AFPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hcchhhcCCCChHHHHHHHHhhcccccc
Confidence 544 33333444555666665554443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-06 Score=94.64 Aligned_cols=201 Identities=12% Similarity=0.109 Sum_probs=171.8
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER--------DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVT 494 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 494 (705)
+.+...|-..|......++.+.|++++++.... -...|.++++.-...|.-+...++|+++.+ +.-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHH
Confidence 456788899999999999999999999988642 345899999988889988899999999998 3333457
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD---AVIWGSLLAAC 570 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~ 570 (705)
|..|...|.+.+.+++|.++++.|.++++ ....+|...++.+.+..+-++|..++.++ ..-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88999999999999999999999999876 56778999999999999999999999887 33343 33444455556
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 005265 571 KVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVK 627 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 627 (705)
.++|+.+++..+|+..+...|.....|..+++.-.+.|+.+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 789999999999999999999999999999999999999999999999999877643
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.5e-05 Score=77.35 Aligned_cols=257 Identities=10% Similarity=-0.072 Sum_probs=143.0
Q ss_pred HHHHHcCChHHHHHHHHHhhhCCCCcch-hhHHHHHHHHhh----cccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHH
Q 005265 358 AGYTQNGENEEALGLFRLLKRESVCPTH-YTFGNLLNACAN----LADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSL 432 (705)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 432 (705)
..+...|++++|...+++..+.. |+. ..+.. ...+.. .+....+.+.+... .+. .+........+
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~-----~~~~~~~~~~~ 120 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY--PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APE-----NPDYWYLLGML 120 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcC-----CCCcHHHHHHH
Confidence 34556677777777777766542 322 22221 111212 23333333333321 111 02333444455
Q ss_pred HHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCh--hhHHHHHHHHhccC
Q 005265 433 IDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGE-KPDH--VTMIGVLCACSHAG 506 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g 506 (705)
...+...|++++|...+++..+ .+...+..+...+...|++++|..++++...... .|+. ..|..+...+...|
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 6677778888888888877653 3455677777778888888888888887776321 1222 23445666777888
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHH-H--HHHHHHHhcCChHHHHHH---HHhC-C---CCCCHHHHHHHHHHHHhcCCH
Q 005265 507 LVEEGRKYFSSMSKEHGLAPLKDHY-T--CMVDLLGRAGCLDEAKTL---IEAM-P---MQPDAVIWGSLLAACKVHRNI 576 (705)
Q Consensus 507 ~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~-~---~~p~~~~~~~l~~~~~~~g~~ 576 (705)
++++|..+++.........+..... + .+...+...|....+.+. .... + .............++...|+.
T Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 280 (355)
T cd05804 201 DYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDK 280 (355)
T ss_pred CHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCH
Confidence 8888888888764221111111111 1 223333444433222222 1111 1 111122223455557788889
Q ss_pred HHHHHHHHHHHhhC-C--------CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 577 MLGEYVAKKLLEIE-P--------SNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 577 ~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
+.|...++.+.... . .........+.++...|++++|.+.+.......
T Consensus 281 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 281 DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999888876542 1 123445677888899999999999999887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.9e-05 Score=69.72 Aligned_cols=324 Identities=13% Similarity=0.061 Sum_probs=184.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHH---HHHHHccCChHHHHHHHHHHHHcCCCCCChhH-HHHH
Q 005265 219 SWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASV---VSACASLAAFKEGLQIHARLMRCEKLRNDLVL-GNAL 294 (705)
Q Consensus 219 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l 294 (705)
-.--+...+...|++..|+.-|....+. |+..|.++ ...|...|+-.-|+.-+..+++ +.||-.. .-.-
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQR 112 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHh
Confidence 3445566667777777777777766652 22333333 3355566666666666666666 4455322 2223
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehH--HHHHHHHHHcCChHHHHHH
Q 005265 295 VDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSW--NALIAGYTQNGENEEALGL 372 (705)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~ 372 (705)
...+.+.|.++.|..-|+.+...++.. |...+|..-+. +-...| ...+..+...|+...|+..
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~-----------~~~~eaqskl~----~~~e~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSN-----------GLVLEAQSKLA----LIQEHWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCc-----------chhHHHHHHHH----hHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 345666777777776666554322210 00000000000 000112 2244556677888888888
Q ss_pred HHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHcc
Q 005265 373 FRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETM 452 (705)
Q Consensus 373 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 452 (705)
...+++.. +.|...+..-..+|...|.+..|..=+..+.+.. ..++...--+-..+...|+.+.++...++.
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-------~DnTe~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-------QDNTEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-------ccchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 88887742 3466666667778888888888887777776665 356666777778888889888888888776
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----
Q 005265 453 VERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----- 527 (705)
Q Consensus 453 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----- 527 (705)
.+-|+..-. +|..-....+..+.+..|.+ ....++|.++++..+...+. .|.
T Consensus 250 LKldpdHK~----Cf~~YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~---ep~~~~ir 306 (504)
T KOG0624|consen 250 LKLDPDHKL----CFPFYKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKN---EPEETMIR 306 (504)
T ss_pred HccCcchhh----HHHHHHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhc---CCccccee
Confidence 543322100 01111112222233333322 22334445555554544332 233
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
...+..+-.+|...|++.+|++...+. .+.|| ..++---..+|.-...++.|+.-|+++.+.+|++..
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 223344455666777777777777665 55665 556666667777777888888888888888887754
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.5e-05 Score=86.36 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=44.9
Q ss_pred HHhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCCchHHHHHHHHH
Q 005265 538 LGRAGCLDEAKTLIEAMPMQ--PDA----VIWGSLLAACKVHRNIMLGEYVAKKLLEIE------PSNSGPYVLLSNMYA 605 (705)
Q Consensus 538 ~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 605 (705)
+...|+.+.|..++...... ... ..+..+..++...|++++|...++++++.. +.....+..++.++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 34456666666665554210 111 112334444556666666666666665541 111223455666666
Q ss_pred hcCChhHHHHHHHHHHh
Q 005265 606 ELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 606 ~~g~~~~A~~~~~~~~~ 622 (705)
+.|+.++|...+.+..+
T Consensus 743 ~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 743 QQGRKSEAQRVLLEALK 759 (903)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777766666654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.4e-07 Score=76.71 Aligned_cols=121 Identities=10% Similarity=-0.016 Sum_probs=79.6
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 005265 478 GLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-P 555 (705)
Q Consensus 478 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 555 (705)
.+|++.++ +.|+. +.....++...|++++|...|+.+.. +.|+ ...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44555555 44553 33455566677777777777776653 3443 666677777777777777777777776 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 556 MQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 556 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
..| +...+..+..++...|++++|...|+++++..|+++..+...+.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 334 56666777777777777777777777777777777776666665544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.1e-06 Score=77.08 Aligned_cols=147 Identities=7% Similarity=0.033 Sum_probs=112.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 005265 464 IVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGC 543 (705)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 543 (705)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...+. -+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 3457778887776544433322 11 0 122356677777777776643 23348899999999999999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHH
Q 005265 544 LDEAKTLIEAM-PMQP-DAVIWGSLLAA-CKVHRN--IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRK 618 (705)
Q Consensus 544 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 618 (705)
+++|...|++. ...| +...+..+..+ +...|+ .++|.++++++++.+|+++.++..++..+...|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988 4556 56677777776 467777 5999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 005265 619 LMRKRG 624 (705)
Q Consensus 619 ~~~~~~ 624 (705)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 998643
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.0019 Score=68.69 Aligned_cols=159 Identities=14% Similarity=0.087 Sum_probs=94.0
Q ss_pred HHHHHHHHhhcccHHH---HHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC----ChhHH
Q 005265 388 FGNLLNACANLADLQL---GRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER----DWVSW 460 (705)
Q Consensus 388 ~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~ 460 (705)
.+.+++.|.+.++... |.-+++...... +.|..+--.++..|+-.|-+..|.++|+.+.-+ |...|
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-------~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh 511 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-------PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH 511 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-------CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH
Confidence 4566778888887663 333444444333 456667778899999999999999999988643 33333
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHH---HHHhHHhcCCCCChhHHHHHHH
Q 005265 461 NAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKY---FSSMSKEHGLAPLKDHYTCMVD 536 (705)
Q Consensus 461 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~---~~~~~~~~~~~p~~~~~~~l~~ 536 (705)
- +..-+...|++..+...++....- ..-+. .+-..+..|| +.|.+....+. =+++... .......+-+..++
T Consensus 512 ~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ 587 (932)
T KOG2053|consen 512 L-IFRRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLS 587 (932)
T ss_pred H-HHHHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 2 334556677888777777765542 11111 1222222233 34555444333 2223211 11122445566778
Q ss_pred HHHhcCChHHHHHHHHhCCCC
Q 005265 537 LLGRAGCLDEAKTLIEAMPMQ 557 (705)
Q Consensus 537 ~~~~~g~~~~A~~~~~~~~~~ 557 (705)
.++..++.++-...++.|..+
T Consensus 588 ll~~~~~~~q~~~~~~~~~l~ 608 (932)
T KOG2053|consen 588 LLCNADRGTQLLKLLESMKLP 608 (932)
T ss_pred HHHhCCcHHHHHHHHhccccC
Confidence 888899999988888888533
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.6e-08 Score=58.56 Aligned_cols=34 Identities=41% Similarity=0.520 Sum_probs=27.3
Q ss_pred cCCCCChhhHHHHHHHhhcCCChHHHHHHHhccC
Q 005265 180 SRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMR 213 (705)
Q Consensus 180 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 213 (705)
.|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677888888888888888888888888888774
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.9e-06 Score=89.30 Aligned_cols=133 Identities=11% Similarity=0.049 Sum_probs=77.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 005265 456 DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTC 533 (705)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 533 (705)
++..+-.|.....+.|+.++|..+++...+ +.||.. ....+..++.+.+++++|...+++... ..|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 345555555666666666666666666666 556553 455555566666666666666665542 2444 455555
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 005265 534 MVDLLGRAGCLDEAKTLIEAMP-MQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN 593 (705)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 593 (705)
+..++.+.|++++|..+|++.- ..|+ ..+|.++..++...|+.++|...|+++++...+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 5566666666666666666651 2232 4556666666666666666666666666654433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-06 Score=71.56 Aligned_cols=95 Identities=11% Similarity=0.062 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
....-.+...+...|++++|..+|+-. ...| +..-|..|..+|...|++++|+..|.++..++|+++.++..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 455556677788999999999999987 4555 56688899999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHh
Q 005265 606 ELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 606 ~~g~~~~A~~~~~~~~~ 622 (705)
..|+.+.|++.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998875
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.3e-06 Score=71.99 Aligned_cols=106 Identities=11% Similarity=-0.006 Sum_probs=91.1
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005265 513 KYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIE 590 (705)
Q Consensus 513 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 590 (705)
.+++... .+.|+. +..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++++++
T Consensus 14 ~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455443 345553 556788899999999999999987 4555 67788999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 591 PSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 591 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
|+++.++..++.++...|++++|...++...+.
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998754
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00024 Score=72.64 Aligned_cols=265 Identities=13% Similarity=0.074 Sum_probs=168.3
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHhhhCCC-CcchhhHHH-HHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhH
Q 005265 351 VSWNALIAGYTQNGENEEALGLFRLLKRESV-CPTHYTFGN-LLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFV 428 (705)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 428 (705)
..|..+...+...|+++.+...+.+..+... .++...... ....+...|+++.+...+..+.+... .+...
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-------~~~~a 79 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-------RDLLA 79 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-------CcHHH
Confidence 3566666777778888887777666554321 222222211 22345677899999999999888753 44444
Q ss_pred HH---HHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHH
Q 005265 429 GN---SLIDMYMKCGSVEDGCRIFETMVER---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCA 501 (705)
Q Consensus 429 ~~---~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~ 501 (705)
+. .+.......+..+.+.+.+...... ....+..+...+...|++++|...+++..+ ..|+. ..+..+..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~p~~~~~~~~la~i 157 (355)
T cd05804 80 LKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE--LNPDDAWAVHAVAHV 157 (355)
T ss_pred HHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcHHHHHHHHH
Confidence 44 2222223356666677776653322 233445556788899999999999999999 55665 567778888
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC--CHH-HH-H--HHHHHHHh
Q 005265 502 CSHAGLVEEGRKYFSSMSKEHGLAPLK--DHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP--DAV-IW-G--SLLAACKV 572 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~-~~-~--~l~~~~~~ 572 (705)
+...|++++|..+++.........|+. ..|..+...+...|++++|..++++. ...| ... .. + .++.-+..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 999999999999999886542222332 34667889999999999999999986 2233 211 11 1 22333444
Q ss_pred cCCHHHHHHH---HHHHHhhCCCCC--chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 573 HRNIMLGEYV---AKKLLEIEPSNS--GPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 573 ~g~~~~a~~~---~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
.|....+.+. ........|... ..-...+.++...|+.++|.+.++.+....
T Consensus 238 ~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 238 AGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred cCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5544333333 222111112221 222367778889999999999999987543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-07 Score=56.98 Aligned_cols=32 Identities=34% Similarity=0.513 Sum_probs=19.2
Q ss_pred CCCCchhhHHHHHHHHHccCChhhHHHHHhcc
Q 005265 49 QFASEIFIQNRLIDVYAKCGCLYGARKVFDKM 80 (705)
Q Consensus 49 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 80 (705)
|+.||..+||.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55566666666666666666666666666555
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-05 Score=80.73 Aligned_cols=244 Identities=12% Similarity=0.050 Sum_probs=152.7
Q ss_pred HHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhc
Q 005265 360 YTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKC 439 (705)
Q Consensus 360 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 439 (705)
+.++|+..+|.-.|+..++.+ +-+...|.-|-......++-..|...+.+..+.. +.|..+.-+|.-.|...
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-------P~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-------PTNLEALMALAVSYTNE 366 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-------CccHHHHHHHHHHHhhh
Confidence 445555555555555555442 1133344444444445555555555555555554 35666666666667777
Q ss_pred CCHHHHHHHHHccCCCCh-hHHHHHH---------HHHHHcCChHHHHHHHHHHH-HCCCCCChhhHHHHHHHHhccCcH
Q 005265 440 GSVEDGCRIFETMVERDW-VSWNAMI---------VGCAQNGYGTEALGLFKKML-LCGEKPDHVTMIGVLCACSHAGLV 508 (705)
Q Consensus 440 g~~~~A~~~~~~~~~~~~-~~~~~li---------~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~ 508 (705)
|.-..|++.++.-..... ..|.... ..+..........++|-++. ..+..+|......|.-.|--.|.+
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 776777766665421100 0000000 11111222334455555544 445445666666666668888999
Q ss_pred HHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 005265 509 EEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDA-VIWGSLLAACKVHRNIMLGEYVAKK 585 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (705)
++|...|+.+. .++|+ ...||-|...++...+.++|+..|.++ .++|.- .++..|.-+|...|.+++|.+.|-.
T Consensus 447 draiDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999886 45676 888999999999999999999999988 788874 4788888889999999999999999
Q ss_pred HHhhCCC-----CC-----chHHHHHHHHHhcCChhHHH
Q 005265 586 LLEIEPS-----NS-----GPYVLLSNMYAELGRWGEVV 614 (705)
Q Consensus 586 ~~~~~p~-----~~-----~~~~~l~~~~~~~g~~~~A~ 614 (705)
++.+.+. .. .+|..|=.++.-.++.|.+.
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 9887544 11 24555555555556555333
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-05 Score=75.57 Aligned_cols=145 Identities=12% Similarity=0.053 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCCC---Chh---HHHHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCh
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVER---DWV---SWNAMIVGCAQN--------GYGTEALGLFKKMLLCGEKPDH 492 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~ 492 (705)
..+..+..+|.+.|++++|...++++.+. +.. ++..+..++... |++++|.+.|+++.+ ..|+.
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~ 148 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNS 148 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCC
Confidence 46677889999999999999999998632 222 455566666654 788999999999998 45665
Q ss_pred hh-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC---CC-CHHHHHHH
Q 005265 493 VT-MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PM---QP-DAVIWGSL 566 (705)
Q Consensus 493 ~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l 566 (705)
.. ...+... .. .. ... ......+...|.+.|++++|...+++. .. .| ....+..+
T Consensus 149 ~~~~~a~~~~-~~---~~------~~~---------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l 209 (235)
T TIGR03302 149 EYAPDAKKRM-DY---LR------NRL---------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARL 209 (235)
T ss_pred hhHHHHHHHH-HH---HH------HHH---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHH
Confidence 32 2111111 00 00 000 011235667788999999999988887 22 23 35678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005265 567 LAACKVHRNIMLGEYVAKKLLEIEPS 592 (705)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~~~~~~p~ 592 (705)
..++...|++++|...++.+....|+
T Consensus 210 ~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 210 VEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88899999999999988887766653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00044 Score=80.46 Aligned_cols=323 Identities=11% Similarity=-0.050 Sum_probs=192.3
Q ss_pred hhcCCChHHHHHHHhccCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC--C----CCCHh--HHHHHHHHHH
Q 005265 196 YGKCGRVSCARRVFDGMRE----RNIVSWNSLITCYEQNGPASDALEVFVRMMASG--I----EPDEV--TLASVVSACA 263 (705)
Q Consensus 196 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~--t~~~ll~~~~ 263 (705)
....|+++.+...++.++. .+..........+...|+++++...+......- . .|... ....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3456777777777776642 223333344445566788888888887765421 0 11111 1122223445
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCCC-------CC--cccHHHHHHHHH
Q 005265 264 SLAAFKEGLQIHARLMRCEKLRND----LVLGNALVDMYAKCGKLNEARCVFDRMPI-------RN--VVSETSMVSGYA 330 (705)
Q Consensus 264 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~ 330 (705)
..|+++.|...++...+.. ...+ ....+.+...+...|+++.|...+.+... +. ..+...+...+.
T Consensus 464 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 NDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6788888888888877632 1112 13445666777788888888888776541 11 123344555677
Q ss_pred hcCCHHHHHHHHHhcCC-------CC----eehHHHHHHHHHHcCChHHHHHHHHHhhhCC--CCcc--hhhHHHHHHHH
Q 005265 331 KASSVKSARLMFTKMLE-------RN----VVSWNALIAGYTQNGENEEALGLFRLLKRES--VCPT--HYTFGNLLNAC 395 (705)
Q Consensus 331 ~~~~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~~~ 395 (705)
..|+++.|...+++... ++ ...+..+...+...|++++|...+.+..... ..+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 88888888887776522 11 1224445566777899999999988875431 1122 23344455566
Q ss_pred hhcccHHHHHHHHHHHHHhCCCCCCCCCCcH-h-HHHHHHHHHHhcCCHHHHHHHHHccCCCCh-------hHHHHHHHH
Q 005265 396 ANLADLQLGRQAHTHVVKHGLRFLSGEESDI-F-VGNSLIDMYMKCGSVEDGCRIFETMVERDW-------VSWNAMIVG 466 (705)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~ 466 (705)
...|+.+.|...+.......... +..... . .....+..+...|+.+.|...+.....+.. ..+..+..+
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNG--RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcc--cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 78899999999888876542200 000010 0 011122445567889999988877654311 113456667
Q ss_pred HHHcCChHHHHHHHHHHHHC----CCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 005265 467 CAQNGYGTEALGLFKKMLLC----GEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKE 521 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 521 (705)
+...|++++|...+++.... |..++. .+...+..++...|+.++|...+.+....
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78888888888888887653 323322 24555666777888888888888877653
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.2e-05 Score=85.03 Aligned_cols=219 Identities=14% Similarity=0.130 Sum_probs=171.3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--------CCcccHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-eehHH
Q 005265 285 RNDLVLGNALVDMYAKCGKLNEARCVFDRMPI--------RNVVSETSMVSGYAKASSVKSARLMFTKMLER-N-VVSWN 354 (705)
Q Consensus 285 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~ 354 (705)
|.+...|-..+......++.+.|++++++... .-...|.++++....-|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 55567777778888888888888888877652 13456777777777777777778888888663 3 34688
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHH
Q 005265 355 ALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLID 434 (705)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 434 (705)
.|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++..+.+.-.. ...+......++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk-----~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK-----QEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch-----hhhHHHHHHHHH
Confidence 8999999999999999999999875 3356677888888999999999999999988876542 335667777888
Q ss_pred HHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhccCcHH
Q 005265 435 MYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH--VTMIGVLCACSHAGLVE 509 (705)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~ 509 (705)
+-.+.|+.+++..+|+.... +-...|+..|..-.++|+.+.+..+|++.+..++.|-. ..|...+..-...|+-+
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 88999999999999998863 35778999999999999999999999999998888765 35555554444444433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.2e-06 Score=83.53 Aligned_cols=212 Identities=11% Similarity=0.006 Sum_probs=146.4
Q ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC--CCChhHHHHHHHH
Q 005265 389 GNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV--ERDWVSWNAMIVG 466 (705)
Q Consensus 389 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~ 466 (705)
..+...+...|-...|..+++... .+.-++.+|...|+..+|..+..+-. .++...|..+.+.
T Consensus 402 ~~laell~slGitksAl~I~Erle---------------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 334445555666666666665432 34456667777777777766665443 3456666666666
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChH
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLD 545 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 545 (705)
.....-+++|.++++..... .-..+.....+.++++++.+.|+.-. .+.|- ..+|-.+.-+..+.+++.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhhH
Confidence 55555566666666553331 11111122234677888888887554 34443 667777778888889999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 546 EAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 546 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
.|.+.|... ...|| ...||++-.+|.+.|+..+|...+.++++.+-++..+|.+..-+..+.|.|++|.+.+.++.+.
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 998888877 56775 5589999999999999999999999999988888888888888889999999999999888764
Q ss_pred CC
Q 005265 624 GV 625 (705)
Q Consensus 624 ~~ 625 (705)
..
T Consensus 617 ~~ 618 (777)
T KOG1128|consen 617 RK 618 (777)
T ss_pred hh
Confidence 33
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.2e-05 Score=71.14 Aligned_cols=133 Identities=13% Similarity=0.069 Sum_probs=91.2
Q ss_pred CCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 005265 489 KPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM--PMQPDAVIWGSL 566 (705)
Q Consensus 489 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 566 (705)
.|+......+-.++...|+-+....+...... ....|......++....+.|++.+|...+.+. .-+||...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 44433224555566666777776666665432 22233455556777777778888888777776 334577777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 567 LAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
..+|-+.|+.++|...|.+++++.|+++.++++|+..|.-.|++++|..++......
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 777888888888888888888888877777788888888888888888777776644
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.2e-05 Score=70.48 Aligned_cols=153 Identities=8% Similarity=0.068 Sum_probs=117.6
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHH
Q 005265 432 LIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEE 510 (705)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~ 510 (705)
-+-.|...|+++......+.+..+. ..+...++.++++..+++.++ ..|+. ..|..+...+...|++++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3467888999888765554433221 012235667888888888887 45554 688888899999999999
Q ss_pred HHHHHHHhHHhcCCCCC-hhHHHHHHHH-HHhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005265 511 GRKYFSSMSKEHGLAPL-KDHYTCMVDL-LGRAGC--LDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAK 584 (705)
Q Consensus 511 a~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 584 (705)
|...|+...+ +.|+ ...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|...++
T Consensus 92 A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998864 4565 7888888886 477787 59999999998 4556 56778888888999999999999999
Q ss_pred HHHhhCCCCCchH
Q 005265 585 KLLEIEPSNSGPY 597 (705)
Q Consensus 585 ~~~~~~p~~~~~~ 597 (705)
++++..|.+..-+
T Consensus 169 ~aL~l~~~~~~r~ 181 (198)
T PRK10370 169 KVLDLNSPRVNRT 181 (198)
T ss_pred HHHhhCCCCccHH
Confidence 9999988876543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00012 Score=71.82 Aligned_cols=210 Identities=13% Similarity=0.050 Sum_probs=130.2
Q ss_pred cHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHHccCC---CChhHHHHHHHHHHHcCCh--
Q 005265 400 DLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCG-SVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYG-- 473 (705)
Q Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-- 473 (705)
..+.|......+++.. +.+..+|+....++...| ++++++..++++.+ ++..+|+.....+.+.|+.
T Consensus 52 ~serAL~lt~~aI~ln-------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 52 RSPRALDLTADVIRLN-------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred CCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhh
Confidence 3444555555555444 234445554445555555 46777777766653 3444566554445555542
Q ss_pred HHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CCh----H
Q 005265 474 TEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRA---GCL----D 545 (705)
Q Consensus 474 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~ 545 (705)
++++.+++++++ ..|. ..+|.....++...|+++++++.++++++. . .-+...|+....++.+. |.. +
T Consensus 125 ~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 125 NKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred HHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHH
Confidence 566777777776 4454 356777777777777888888888877654 1 22355666655555444 222 3
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-----------
Q 005265 546 EAKTLIEAM-PMQP-DAVIWGSLLAACKVH----RNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELG----------- 608 (705)
Q Consensus 546 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----------- 608 (705)
++++...++ ...| |...|+.+...+... ++..+|.+.+.++++.+|.++.+...|+++|....
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~ 280 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVD 280 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhh
Confidence 556665443 4455 566788777777663 34566888888888888988888889999998632
Q ss_pred -------ChhHHHHHHHHH
Q 005265 609 -------RWGEVVRVRKLM 620 (705)
Q Consensus 609 -------~~~~A~~~~~~~ 620 (705)
..++|.++++.+
T Consensus 281 ~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 281 TLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred ccccccccHHHHHHHHHHH
Confidence 235677777777
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.9e-05 Score=68.92 Aligned_cols=159 Identities=13% Similarity=0.086 Sum_probs=125.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 005265 456 DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCM 534 (705)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 534 (705)
|... ..+-..+...|+-+....+...... ..|. ............+.|++.+|...+++... .-++|...|+.+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~l 140 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLL 140 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHH
Confidence 4444 5556677778888888877776554 2333 33455577788889999999999998853 345668999999
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhH
Q 005265 535 VDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGE 612 (705)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 612 (705)
.-+|.+.|++++|..-|.+. .+.| ++...+++...+.-.|+.+.|+.++.......+.+..+-.+|+-+....|++++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 99999999999999888877 5555 566788888889999999999999999988888888888999999999999999
Q ss_pred HHHHHHH
Q 005265 613 VVRVRKL 619 (705)
Q Consensus 613 A~~~~~~ 619 (705)
|..+..+
T Consensus 221 A~~i~~~ 227 (257)
T COG5010 221 AEDIAVQ 227 (257)
T ss_pred HHhhccc
Confidence 9887654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0069 Score=64.64 Aligned_cols=159 Identities=11% Similarity=0.020 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 005265 459 SWNAMIVGCAQNGYGT---EALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCM 534 (705)
Q Consensus 459 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 534 (705)
+-+.|+..+.+.++.. +|+-+++.-+. ..|.. .+-..+++.|+..|-...|.+.++.+--+ .+..|..-|- +
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~ 513 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-I 513 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-H
Confidence 4567777888777655 34444544444 33433 45566778888888888888888877443 5665543332 2
Q ss_pred HHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CCchHHHHHHHHHhcC
Q 005265 535 VDLLGRAGCLDEAKTLIEAMP-M-QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS----NSGPYVLLSNMYAELG 608 (705)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g 608 (705)
...+...|++..+...++..- + ..+..----++....++|.+..-.+...---.+.-. -..+-....+.....+
T Consensus 514 ~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 514 FRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345566777777776666541 0 011111111223334566665555443322222211 1122345666677778
Q ss_pred ChhHHHHHHHHHH
Q 005265 609 RWGEVVRVRKLMR 621 (705)
Q Consensus 609 ~~~~A~~~~~~~~ 621 (705)
+.++-...+..|.
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 8888777777776
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.2e-05 Score=68.86 Aligned_cols=100 Identities=18% Similarity=0.269 Sum_probs=78.8
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 005265 524 LAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLL 600 (705)
Q Consensus 524 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 600 (705)
..|+ ......+...+...|++++|.+.++.. ...| +...|..+...+...|++++|...++++++.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3454 455666777778888888888888776 3344 566777777778888888999998888888888888888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 005265 601 SNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 601 ~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+.+|...|++++|...++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999988887753
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00012 Score=79.33 Aligned_cols=140 Identities=12% Similarity=0.129 Sum_probs=108.1
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE--R-DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV-TMIGV 498 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l 498 (705)
..++..+..|.....+.|..++|..+++...+ | +...+..++..+.+.+++++|+..+++... ..|+.. ....+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 45678888888888899999999999988763 3 556777788888899999999999998888 667775 55566
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 005265 499 LCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM--PMQPDAVIWGSLL 567 (705)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 567 (705)
..++...|++++|..+|+++... .|+ ...+..+..++-..|+.++|...|+.. ...|....|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 66778889999999999988652 344 778888888888999999999988887 2334445554444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5e-05 Score=78.37 Aligned_cols=187 Identities=18% Similarity=0.164 Sum_probs=159.6
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCAC 502 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 502 (705)
+|-...-..+.+.+.+.|-...|..+|++. ..|.-.|.+|+..|+..+|..+..+-.+ -+||...|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 666777788899999999999999999975 4677888999999999999999988887 578889999999999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 005265 503 SHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGE 580 (705)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 580 (705)
-...-++.|.++++....+ .-..+.....+.++++++.+.|+.. .+.| ...+|..+..+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 8888899999998866432 1122223334579999999999875 5555 5678999988899999999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 581 YVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 581 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
+.|...+.++|++...|+++..+|.+.|+..+|...+++..+.+
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999998765
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.7e-05 Score=77.83 Aligned_cols=122 Identities=16% Similarity=0.149 Sum_probs=99.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKV 572 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 572 (705)
...++..+...++++.|.++|+++.+. .|+ ....++..+...++-.+|.+++++. ...| |...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445566667778888888888888654 354 4455777888888888888888877 3334 56666666777999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 573 HRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 573 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
.++++.|.++.+++.++.|++..+|..|+.+|.+.|++++|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999886
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00025 Score=69.67 Aligned_cols=187 Identities=9% Similarity=0.063 Sum_probs=136.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhcc
Q 005265 431 SLIDMYMKCGSVEDGCRIFETMVER---DWVSWNAMIVGCAQNG-YGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHA 505 (705)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 505 (705)
.+-..+...++.++|+.+...+.+. +..+|+.....+...| ++++++..++++.+ ..|+. .+|..-...+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHHHHc
Confidence 3334455567788899888887643 4556776666677777 57999999999998 45554 3565554455556
Q ss_pred CcH--HHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC--
Q 005265 506 GLV--EEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVH---RN-- 575 (705)
Q Consensus 506 g~~--~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~-- 575 (705)
|.. +++..+++.+.+ ..|. ..+|+....++.+.|++++|++.++++ ...| |..+|+.....+.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 120 GPDAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred CchhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 653 677888887764 3554 888999999999999999999999998 4344 677788777665544 22
Q ss_pred --HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc----CChhHHHHHHHHHHh
Q 005265 576 --IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAEL----GRWGEVVRVRKLMRK 622 (705)
Q Consensus 576 --~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~ 622 (705)
.+.......++++++|++..+|..+..++... ++..+|.+...+..+
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 25678888899999999999999999999883 455667777766543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0028 Score=62.98 Aligned_cols=143 Identities=17% Similarity=0.096 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH-HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 005265 459 SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMI-GVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVD 536 (705)
Q Consensus 459 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 536 (705)
.+--....+...|++++|+..++.++. -.||...|. .....+...++.++|.+.++.+.. ..|+ ....-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHH
Confidence 333334445566777777777777776 456555443 334456677777777777776653 3555 555566677
Q ss_pred HHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHH
Q 005265 537 LLGRAGCLDEAKTLIEAM--PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVV 614 (705)
Q Consensus 537 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 614 (705)
+|.+.|+..+|+..++.. ..+-|+..|..|..+|...|+..++.... +..|...|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence 777777777777777766 23346667777777777777666554433 34455677777777
Q ss_pred HHHHHHHhC
Q 005265 615 RVRKLMRKR 623 (705)
Q Consensus 615 ~~~~~~~~~ 623 (705)
..+...+++
T Consensus 446 ~~l~~A~~~ 454 (484)
T COG4783 446 IFLMRASQQ 454 (484)
T ss_pred HHHHHHHHh
Confidence 777777654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0012 Score=59.99 Aligned_cols=116 Identities=12% Similarity=0.113 Sum_probs=75.2
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH----HhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 005265 502 CSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLL----GRAGCLDEAKTLIEAM--PMQPDAVIWGSLLAACKVHRN 575 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~ 575 (705)
+.+..+.+-|.+.++.|.+ + .+..+.+.|..++ .-.+...+|.-+|+++ +..|++.+.+....+|...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence 3344555555555555532 1 1233333333333 2334567777777777 256788888888888888888
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHH-HHHHHHH
Q 005265 576 IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVV-RVRKLMR 621 (705)
Q Consensus 576 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 621 (705)
+++|+.+++.++..+++++.+..+++.+-...|+-.++. +.+.+.+
T Consensus 223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 888888888888888888888888877777777765543 4444444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00035 Score=62.95 Aligned_cols=167 Identities=14% Similarity=0.144 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAM---IVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACS 503 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 503 (705)
.+|..++-+...+|+.+.|..+++.+..+=+.++... ...+-..|++++|+++++.+++.. +.|.+++..-+...-
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 5566677777888999999999988754322222221 223556899999999999999864 334567777777777
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHH
Q 005265 504 HAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVH---RNIML 578 (705)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~ 578 (705)
..|+.-+|++-+....+. +..|...|.-+.+.|...|++++|.-.++++ -++| ++..+..+...+... .+.+.
T Consensus 132 a~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 788888888888777664 5678999999999999999999999999998 3456 455556666664333 37788
Q ss_pred HHHHHHHHHhhCCCCCch
Q 005265 579 GEYVAKKLLEIEPSNSGP 596 (705)
Q Consensus 579 a~~~~~~~~~~~p~~~~~ 596 (705)
+.++|.+++++.|.+...
T Consensus 210 arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHHHHhChHhHHH
Confidence 999999999999966443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0021 Score=70.76 Aligned_cols=150 Identities=11% Similarity=0.073 Sum_probs=91.4
Q ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHH
Q 005265 386 YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIV 465 (705)
Q Consensus 386 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 465 (705)
..+..+..+|.+.|+.+++..+++.+++.. +.|+.+.|.+...|... ++++|.+++.+. +.
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~ 177 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-------RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IY 177 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HH
Confidence 355555666666666666666666666665 36777888888888887 888888877664 33
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChH
Q 005265 466 GCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLD 545 (705)
Q Consensus 466 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 545 (705)
.|...+++..+.++|.++.. ..|+...+ -.++.+.+....+..--..++--+...|...++++
T Consensus 178 ~~i~~kq~~~~~e~W~k~~~--~~~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~ 240 (906)
T PRK14720 178 RFIKKKQYVGIEEIWSKLVH--YNSDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWD 240 (906)
T ss_pred HHHhhhcchHHHHHHHHHHh--cCcccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhh
Confidence 36667788888888888887 45554322 11222222222222223444555566666777777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005265 546 EAKTLIEAM-PMQP-DAVIWGSLLAACK 571 (705)
Q Consensus 546 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 571 (705)
++..+++.. ...| |.....-++.+|.
T Consensus 241 ~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 241 EVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 777777766 3333 4445555555544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0007 Score=74.32 Aligned_cols=151 Identities=13% Similarity=0.089 Sum_probs=111.8
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 005265 424 SDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLC 500 (705)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 500 (705)
.+..++..+..+|-+.|+.++|..+++++.+ .|+...|.+...|+.. +.++|.+++.+.+..
T Consensus 114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------- 178 (906)
T PRK14720 114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------- 178 (906)
T ss_pred hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------
Confidence 3556778888999999999999999988864 3677888888888888 899999988887763
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLG 579 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 579 (705)
+...+++..+.++|..+.. ..|+ ...+-.+....... .+...-..++.-+-..|...++++++
T Consensus 179 -~i~~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~~------------~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 179 -FIKKKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVLGH------------REFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred -HHhhhcchHHHHHHHHHHh---cCcccchHHHHHHHHHHhh------------hccchhHHHHHHHHHHHhhhhhhhHH
Confidence 5566788888888888864 2444 33333333322222 11122344555566778889999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 580 EYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 580 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
..+++.+++.+|.|..+..-++.+|.
T Consensus 243 i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 243 IYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 99999999999999888888888876
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00038 Score=68.93 Aligned_cols=119 Identities=20% Similarity=0.182 Sum_probs=105.9
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIM 577 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 577 (705)
.....|.+++|+..++.+.+. .|+ +..+....+.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 456789999999999998764 455 777788889999999999999999998 56776 667788888999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 578 LGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 578 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+|+.+++.....+|+++..|..|+..|..+|+..+|...+.+...
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00013 Score=73.07 Aligned_cols=127 Identities=14% Similarity=0.105 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcc
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHA 505 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~ 505 (705)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.++. .| |...+..-...|.+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 445567777778899999999999999887777778888998999999999999999973 45 444566666678899
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 005265 506 GLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMPMQP 558 (705)
Q Consensus 506 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 558 (705)
++++.|+++.+++.. ..|+ ..+|..|+.+|.+.|++++|+..++.+|..|
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999998874 4676 7799999999999999999999999997544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.9e-06 Score=50.64 Aligned_cols=35 Identities=46% Similarity=0.656 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh
Q 005265 458 VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH 492 (705)
Q Consensus 458 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 492 (705)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999999873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.2e-06 Score=50.56 Aligned_cols=35 Identities=43% Similarity=0.726 Sum_probs=32.3
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 005265 218 VSWNSLITCYEQNGPASDALEVFVRMMASGIEPDE 252 (705)
Q Consensus 218 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 252 (705)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00043 Score=62.39 Aligned_cols=182 Identities=13% Similarity=0.116 Sum_probs=140.7
Q ss_pred cCCHHHHHHHHHccCC--------CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHH-HHHHhccCcH
Q 005265 439 CGSVEDGCRIFETMVE--------RDW-VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGV-LCACSHAGLV 508 (705)
Q Consensus 439 ~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~ 508 (705)
..+.++..+++..+.. ++. ..|..++-+....|+.+.|...++++... + |.+.-...+ .--+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4578888888887742 222 24556666777889999999999999886 3 665432222 2235567899
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005265 509 EEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM--PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKL 586 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 586 (705)
++|.++++.+..+ . +.|..++--=+.+.-..|+--+|++-+... .+..|...|.-+...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d-d-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED-D-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc-C-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999865 2 334667776677777788888888877766 45569999999999999999999999999999
Q ss_pred HhhCCCCCchHHHHHHHHHhcC---ChhHHHHHHHHHHhCC
Q 005265 587 LEIEPSNSGPYVLLSNMYAELG---RWGEVVRVRKLMRKRG 624 (705)
Q Consensus 587 ~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 624 (705)
+=+.|-++..+..++.++...| +++-|++++.+..+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999988776 5667888888887644
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00019 Score=61.35 Aligned_cols=113 Identities=12% Similarity=0.015 Sum_probs=87.4
Q ss_pred HHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 005265 479 LFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PM 556 (705)
Q Consensus 479 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 556 (705)
.+++.+. ..|+. .....+...+...|++++|.+.|+.+... .+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 55654 34566667778889999999999887643 1234778888888999999999999988887 34
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 557 QP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 557 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
.| +...+..+...+...|++++|...++++++.+|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 5677777888899999999999999999999998865
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00025 Score=61.33 Aligned_cols=114 Identities=17% Similarity=0.106 Sum_probs=61.2
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHH
Q 005265 505 AGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDA----VIWGSLLAACKVHRNIML 578 (705)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~ 578 (705)
.++...+...++.+.+.++-.|- ....-.+...+...|++++|...|+.. ...||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555555555544221111 222233445555666666666666655 112322 233444555666677777
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 005265 579 GEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKL 619 (705)
Q Consensus 579 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 619 (705)
|...++.. ...+-.+..+..++++|.+.|++++|+..|++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77666542 22333444566777777777777777777765
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.3e-05 Score=49.17 Aligned_cols=34 Identities=26% Similarity=0.606 Sum_probs=30.8
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 005265 217 IVSWNSLITCYEQNGPASDALEVFVRMMASGIEP 250 (705)
Q Consensus 217 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 250 (705)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.8e-05 Score=57.30 Aligned_cols=64 Identities=22% Similarity=0.260 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 005265 559 DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELG-RWGEVVRVRKLMRK 622 (705)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 622 (705)
+..+|..+...+...|++++|+..|+++++.+|+++.+|..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999 79999999998875
|
... |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.6e-05 Score=48.84 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCC
Q 005265 117 CSWNSMVSGFAQHDRFSEALGYFVKMHSENFAL 149 (705)
Q Consensus 117 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 149 (705)
.+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0028 Score=57.80 Aligned_cols=159 Identities=14% Similarity=0.057 Sum_probs=100.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----c
Q 005265 430 NSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSH----A 505 (705)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~ 505 (705)
..-...|+..|++++|.+.......-+....+ ...+.+..+.+-|.+.+++|++- -+..|.+.|..++.+ .
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 33344566777777777777663322333322 33455666777777777777762 244566656665543 4
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 005265 506 GLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM--PMQPDAVIWGSLLAACKVHRNI-MLGEYV 582 (705)
Q Consensus 506 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~-~~a~~~ 582 (705)
+.+.+|.-+|+++..+ ..|+..+.+....++...|++++|..++++. ....++.+...++-.....|.. +--.+.
T Consensus 187 ek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 5677788888877542 5677777777777777888888888887776 3334666666666665556654 444566
Q ss_pred HHHHHhhCCCCCc
Q 005265 583 AKKLLEIEPSNSG 595 (705)
Q Consensus 583 ~~~~~~~~p~~~~ 595 (705)
..++....|.++.
T Consensus 265 l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 265 LSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHhcCCcchH
Confidence 7777777777653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00034 Score=67.50 Aligned_cols=166 Identities=12% Similarity=-0.012 Sum_probs=119.4
Q ss_pred hHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH--HHhccCcHHHHHHHHHHhHHhcCCCCChhHHH--
Q 005265 458 VSWNAM-IVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLC--ACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYT-- 532 (705)
Q Consensus 458 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-- 532 (705)
.+|..+ ..++.-.|++++|...--..++ +.++. .+..+++ ++...++.+.|...|++.+ .+.|+...-.
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilk--ld~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILK--LDATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSA 242 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHh--cccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhH
Confidence 445444 3456667888888887777766 33322 2333333 3446778888888888665 4456533221
Q ss_pred -----------HHHHHHHhcCChHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 533 -----------CMVDLLGRAGCLDEAKTLIEAM-PMQ-----PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 533 -----------~l~~~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
-=.+-..+.|++.+|.+.|.+. .+. |+...|........+.|+.++|+.-.+++++++|.-..
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 1233456889999999999987 444 45556666667788899999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 005265 596 PYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQP 629 (705)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 629 (705)
+|..-+.++...++|++|.+-+++..+....+++
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~ 356 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEI 356 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Confidence 9999999999999999999999988765444333
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.4e-05 Score=61.57 Aligned_cols=78 Identities=19% Similarity=0.291 Sum_probs=52.5
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHH
Q 005265 541 AGCLDEAKTLIEAM-PMQP---DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRV 616 (705)
Q Consensus 541 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 616 (705)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666666666665 1222 344555567777778888888888877 666666666666778888888888888888
Q ss_pred HHH
Q 005265 617 RKL 619 (705)
Q Consensus 617 ~~~ 619 (705)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00018 Score=72.45 Aligned_cols=84 Identities=15% Similarity=0.095 Sum_probs=45.2
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHH
Q 005265 538 LGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVR 615 (705)
Q Consensus 538 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 615 (705)
+...|++++|+++|+++ ...| +...|..+..++...|++++|...++++++++|+++..|..++.+|...|++++|..
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 34445555555555554 2233 334444445555555555555555555555555555555555555555555555555
Q ss_pred HHHHHH
Q 005265 616 VRKLMR 621 (705)
Q Consensus 616 ~~~~~~ 621 (705)
.+++..
T Consensus 92 ~~~~al 97 (356)
T PLN03088 92 ALEKGA 97 (356)
T ss_pred HHHHHH
Confidence 555554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=7.8e-05 Score=69.03 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=59.0
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 005265 502 CSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIML 578 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 578 (705)
..+.+++.+|+..|..++ .+.|. ...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 556667777777777665 34554 555555566777777777777666655 45553 4466667777777777777
Q ss_pred HHHHHHHHHhhCCCCCc
Q 005265 579 GEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 579 a~~~~~~~~~~~p~~~~ 595 (705)
|++.|+++++++|++..
T Consensus 168 A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHHhhhccCCCcHH
Confidence 77777777777777654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00014 Score=57.57 Aligned_cols=92 Identities=24% Similarity=0.255 Sum_probs=75.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005265 531 YTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELG 608 (705)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 608 (705)
+..+...+...|++++|...+++. ...| +...+..+...+...|+++.|.+.++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667778888888888888876 3344 34667777777888899999999999999999988888899999999999
Q ss_pred ChhHHHHHHHHHHh
Q 005265 609 RWGEVVRVRKLMRK 622 (705)
Q Consensus 609 ~~~~A~~~~~~~~~ 622 (705)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999999888764
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00022 Score=59.39 Aligned_cols=94 Identities=17% Similarity=0.076 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CchHHHHH
Q 005265 530 HYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN---SGPYVLLS 601 (705)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 601 (705)
++..++..+.+.|++++|.+.|+.+ ...|+ ...+..+...+...|+++.|...+++++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555566666666666666655 22232 2344455666666777777777777777666654 33466667
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 005265 602 NMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 602 ~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
.++.+.|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777777777777777766654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00081 Score=58.14 Aligned_cols=122 Identities=14% Similarity=0.079 Sum_probs=67.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHH
Q 005265 461 NAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH----VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL--KDHYTCM 534 (705)
Q Consensus 461 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l 534 (705)
..++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+... ...|. ......|
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 3334443 356666666666666663 2322 22333445566667777777777766543 22222 1233345
Q ss_pred HHHHHhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005265 535 VDLLGRAGCLDEAKTLIEAMPMQ-PDAVIWGSLLAACKVHRNIMLGEYVAKKL 586 (705)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 586 (705)
..++...|++++|+..++..... .....+......+...|+.++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 56666777777777777665322 23344445555577777777777777654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00053 Score=58.29 Aligned_cols=100 Identities=13% Similarity=0.118 Sum_probs=81.3
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHH
Q 005265 523 GLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQ-PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVL 599 (705)
Q Consensus 523 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 599 (705)
|+.++ ....-...--+-..|++++|..+|+-+ -.. -+..-|..|..+|...+++++|...|..+..++++|+.++..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 44444 222333344456789999999999876 223 356678889989999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 005265 600 LSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 600 l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+.+|...|+.+.|+..|+...+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999998875
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00042 Score=57.65 Aligned_cols=103 Identities=11% Similarity=0.021 Sum_probs=65.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD----AVIWGSLLA 568 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 568 (705)
+......+...|++++|.+.|+.+.+...-.|. ...+..+..++.+.|++++|...|+.+ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344445555666666666666666543211111 334555667777777777777777765 22233 456677777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 005265 569 ACKVHRNIMLGEYVAKKLLEIEPSNSGPY 597 (705)
Q Consensus 569 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 597 (705)
++...|+.++|...++++++..|++....
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 78888888888888888888888876543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.73 E-value=8.5e-05 Score=53.88 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=47.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+...+...|++++|.+.|+++++.+|+++..+..++.++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455778888888888888888888888888888888888888888888888888653
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0015 Score=68.76 Aligned_cols=139 Identities=13% Similarity=0.055 Sum_probs=63.9
Q ss_pred CCChhHHHHHHHHHHHc--C---ChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhcc--------CcHHHHHHHHHHhH
Q 005265 454 ERDWVSWNAMIVGCAQN--G---YGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHA--------GLVEEGRKYFSSMS 519 (705)
Q Consensus 454 ~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~--------g~~~~a~~~~~~~~ 519 (705)
..|...|...+.+.... + ....|..+|++.++ ..|+.. .+..+..++... .++..+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 44677777777764432 2 36678888888888 677753 333332222111 01122222222211
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 520 KEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 520 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
.......+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 10001112333444433333444555555444444 3344444444444444444555555555555554444444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=9.8e-05 Score=54.16 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=45.9
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 571 KVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
...|++++|.+.++++++.+|++..++..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999987764
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00044 Score=61.91 Aligned_cols=82 Identities=15% Similarity=0.047 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSN 602 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 602 (705)
...+..+...|.+.|++++|...|++. ...|+ ...+..+...+...|++++|...++++++..|++...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445666677777788888888887766 22222 3577778888899999999999999999999999888889999
Q ss_pred HHHhcCC
Q 005265 603 MYAELGR 609 (705)
Q Consensus 603 ~~~~~g~ 609 (705)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 9988776
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0003 Score=65.32 Aligned_cols=101 Identities=20% Similarity=0.132 Sum_probs=84.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc
Q 005265 464 IVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRA 541 (705)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 541 (705)
..-+.+.+++.+|+..|.+.++ +.|+. +-|..-..+|++.|.++.|++-.+..+ .+.|. ...|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHcc
Confidence 3457788999999999999999 77765 566777889999999999998888665 56787 88999999999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 005265 542 GCLDEAKTLIEAM-PMQPDAVIWGSLLAA 569 (705)
Q Consensus 542 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 569 (705)
|++++|++.|++. .+.|+..+|-.-+..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999999987 788988777554444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00039 Score=61.98 Aligned_cols=94 Identities=12% Similarity=-0.118 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSN 602 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 602 (705)
...|..++..+...|++++|+..|++. ...|+ ..+|..+...+...|++++|...+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 556677777888889999999988887 33332 3478888888999999999999999999999999888889998
Q ss_pred HHH-------hcCChhHHHHHHHHHH
Q 005265 603 MYA-------ELGRWGEVVRVRKLMR 621 (705)
Q Consensus 603 ~~~-------~~g~~~~A~~~~~~~~ 621 (705)
++. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 988 8888887766666543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.063 Score=53.13 Aligned_cols=115 Identities=15% Similarity=0.095 Sum_probs=78.3
Q ss_pred hccCc-HHHHHHHHHHhHHhcCCCC-ChhHHHHHH----HHHHhc---CCh---HHHHHHHHhCCCCC----CHHHHHHH
Q 005265 503 SHAGL-VEEGRKYFSSMSKEHGLAP-LKDHYTCMV----DLLGRA---GCL---DEAKTLIEAMPMQP----DAVIWGSL 566 (705)
Q Consensus 503 ~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l~----~~~~~~---g~~---~~A~~~~~~~~~~p----~~~~~~~l 566 (705)
-+.|. -+.|+++++.+.+- .| |..+-|.+. ..|..+ ..+ =.-..++++.++.| +...-|.|
T Consensus 390 W~~g~~dekalnLLk~il~f---t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQF---TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred HhcCCccHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 34444 67788888777532 33 333333222 122211 111 12233455556555 45577888
Q ss_pred HHH--HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 567 LAA--CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 567 ~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
.+| +..+|++.++.-.-.-+.++.| ++.+|..+|-++....+|++|..++..++
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 888 6789999999999999999999 77889999999999999999999998765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00033 Score=67.36 Aligned_cols=262 Identities=13% Similarity=0.081 Sum_probs=157.4
Q ss_pred HHHHHcCChHHHHHHHHHhhhCCC---CcchhhHHHHHHHHhhcccHHHHHHHHHHHHH--hCCCCCCCCCCcHhHHHHH
Q 005265 358 AGYTQNGENEEALGLFRLLKRESV---CPTHYTFGNLLNACANLADLQLGRQAHTHVVK--HGLRFLSGEESDIFVGNSL 432 (705)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~l 432 (705)
.-+|+.|+....+.+|+..++.|. +.=+..|..+-++|.-.+++++|.+++..=+. .-+ +...-.......|
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l---gdklGEAKssgNL 101 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL---GDKLGEAKSSGNL 101 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh---cchhccccccccc
Confidence 346777777777777777777662 12233455556666777777777777643221 100 0001112223334
Q ss_pred HHHHHhcCCHHHHHHHHHccCC-------C--ChhHHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 005265 433 IDMYMKCGSVEDGCRIFETMVE-------R--DWVSWNAMIVGCAQNGY--------------------GTEALGLFKKM 483 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m 483 (705)
.+.+--.|.+++|.-.-.+-.. + ....+-.+...|...|+ .+.|.++|.+=
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 4555556666666544332211 0 11223334445544431 23344444432
Q ss_pred HH----CCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHh---HHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005265 484 LL----CGEKP-DHVTMIGVLCACSHAGLVEEGRKYFSSM---SKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 484 ~~----~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 554 (705)
++ .|-.. --..|..+...|.-.|+++.|+..++.- .+++|-+.. ...++.|.+++.-.|+++.|.+.|+..
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 22 11111 1134566666666788999998876642 234444333 567888999999999999999998864
Q ss_pred -------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 005265 555 -------P-MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEI------EPSNSGPYVLLSNMYAELGRWGEVVRVRKLM 620 (705)
Q Consensus 555 -------~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 620 (705)
+ -.....+..+|...|.-..+++.|+.++.+=+.+ ......++.+|++.|...|..++|+.+.+.-
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 1 1123456678888888888999999988876654 1234467999999999999999999888776
Q ss_pred Hh
Q 005265 621 RK 622 (705)
Q Consensus 621 ~~ 622 (705)
.+
T Consensus 342 l~ 343 (639)
T KOG1130|consen 342 LR 343 (639)
T ss_pred HH
Confidence 54
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.087 Score=53.35 Aligned_cols=161 Identities=14% Similarity=0.086 Sum_probs=120.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 005265 457 WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMV 535 (705)
Q Consensus 457 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 535 (705)
..+|-..++.-.+..-...|..+|.+..+.+..+ +.....+++.-++ .++.+-|.++|+.-.+.+|- ++.--...+
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~Yl 442 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYL 442 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHH
Confidence 3467788888888888999999999999998888 4556667776555 57899999999988776543 344456678
Q ss_pred HHHHhcCChHHHHHHHHhC---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC----chHHHHHHHHHh
Q 005265 536 DLLGRAGCLDEAKTLIEAM---PMQP--DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS----GPYVLLSNMYAE 606 (705)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~ 606 (705)
+-+.+.++-..|..+|++. .+.| ...+|..++..-..-|+...+.++-++.....|.+. ..-..+.+-|.-
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~ 522 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGI 522 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhh
Confidence 8889999999999999988 2334 356999999999999999999999999887766221 123455666666
Q ss_pred cCChhHHHHHHHHH
Q 005265 607 LGRWGEVVRVRKLM 620 (705)
Q Consensus 607 ~g~~~~A~~~~~~~ 620 (705)
.+.+..-..-++.+
T Consensus 523 ~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 523 LDLYPCSLDELKFL 536 (656)
T ss_pred cccccccHHHHHhh
Confidence 66655444433333
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=8.4e-05 Score=44.36 Aligned_cols=31 Identities=32% Similarity=0.658 Sum_probs=22.7
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHhHhCCC
Q 005265 117 CSWNSMVSGFAQHDRFSEALGYFVKMHSENF 147 (705)
Q Consensus 117 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 147 (705)
++||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=7.6e-05 Score=44.56 Aligned_cols=31 Identities=48% Similarity=0.694 Sum_probs=24.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 005265 218 VSWNSLITCYEQNGPASDALEVFVRMMASGI 248 (705)
Q Consensus 218 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 248 (705)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887664
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.13 Score=53.58 Aligned_cols=140 Identities=14% Similarity=0.137 Sum_probs=76.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHH
Q 005265 219 SWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMY 298 (705)
Q Consensus 219 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 298 (705)
+|+.+...++....+++|.+.|..-... ...+.++.+...+++-..+... ++.+....-.+.+++
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~------Lpe~s~llp~~a~mf 862 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLELFGELEVLART------LPEDSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHh------cCcccchHHHHHHHH
Confidence 4666666666666666666665543210 1123333444444433322222 566666777777777
Q ss_pred HhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHH--------------HHHHHHHcC
Q 005265 299 AKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNA--------------LIAGYTQNG 364 (705)
Q Consensus 299 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------------li~~~~~~g 364 (705)
.+.|.-++|.+.|-+-..|. +.+..|...+++.+|.++-++..-|.+.+.-+ -|..+.+.|
T Consensus 863 ~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~ 937 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAG 937 (1189)
T ss_pred HhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcc
Confidence 77777777776665544332 23455666677777777776665544433211 233444556
Q ss_pred ChHHHHHHHHHhhh
Q 005265 365 ENEEALGLFRLLKR 378 (705)
Q Consensus 365 ~~~~A~~~~~~m~~ 378 (705)
++-+|.+++.+|-+
T Consensus 938 ~~~daarll~qmae 951 (1189)
T KOG2041|consen 938 RHLDAARLLSQMAE 951 (1189)
T ss_pred cchhHHHHHHHHhH
Confidence 65566666666543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0028 Score=59.49 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=85.6
Q ss_pred CC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHH-hc--CCHHHHHHHHHHHHhhCCCCCchHH
Q 005265 525 AP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQ-PDAVIWGSLLAACK-VH--RNIMLGEYVAKKLLEIEPSNSGPYV 598 (705)
Q Consensus 525 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~-~~--g~~~~a~~~~~~~~~~~p~~~~~~~ 598 (705)
.| |...|-.|...|.+.|+++.|..-|... .+. +++..+..+..++. +. .+..++..++++++..+|.+..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 35 5899999999999999999999999988 444 45667777777733 33 3567899999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 599 LLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 599 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
.|+..+...|++.+|...++.|.+...
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 999999999999999999999997543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00099 Score=67.17 Aligned_cols=104 Identities=13% Similarity=0.061 Sum_probs=70.9
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIM 577 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 577 (705)
.+...|++++|+..|+++++. .|+ ...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 344566777777777766542 343 556666677777777777777777766 4444 4556777777788888888
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 005265 578 LGEYVAKKLLEIEPSNSGPYVLLSNMYAEL 607 (705)
Q Consensus 578 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 607 (705)
+|...|+++++++|++......+..+..+.
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888888888888888877666665554433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.021 Score=55.73 Aligned_cols=110 Identities=13% Similarity=0.160 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCC-----cchh-hHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCc
Q 005265 352 SWNALIAGYTQNGENEEALGLFRLLKRESVC-----PTHY-TFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESD 425 (705)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 425 (705)
.+..+...+.+.|++++|+.+|++....-.. ++.. .|...+-++...||+-.|...++........+.+ ...
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~--s~E 234 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS--SRE 234 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT--SHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC--cHH
Confidence 4566778899999999999999988764322 2222 2333444666778999999999988755432211 223
Q ss_pred HhHHHHHHHHHHhc--CCHHHHHHHHHccCCCChhHHHHH
Q 005265 426 IFVGNSLIDMYMKC--GSVEDGCRIFETMVERDWVSWNAM 463 (705)
Q Consensus 426 ~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~l 463 (705)
......|+++|-.. ..++.|+.-|+.+.+-|..--..|
T Consensus 235 ~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 235 YKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHH
Confidence 45667778887653 457888888888877665544444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00032 Score=52.28 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=52.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 567 LAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
...+.+.++++.|.++++++++++|+++..+..++.++.+.|++++|.+.+++..+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3467889999999999999999999999999999999999999999999999988644
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0036 Score=55.95 Aligned_cols=130 Identities=15% Similarity=0.172 Sum_probs=86.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 005265 456 DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD--HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYT 532 (705)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 532 (705)
....+..+...+...|++++|...|++.++....|. ...+..+...+.+.|++++|...+++..+. .|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 444667777777788888888888888876433222 246667777777888888888888776543 343 55566
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005265 533 CMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGR 609 (705)
Q Consensus 533 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 609 (705)
.+..+|...|+...+..-++.. ...+++|.+.++++++.+|++ |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666777777665554333221 123677888999999989887 5566666655554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00042 Score=50.15 Aligned_cols=61 Identities=21% Similarity=0.220 Sum_probs=48.3
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 534 MVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456678888888888888887 4456 466788888889999999999999999999999874
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0069 Score=58.81 Aligned_cols=135 Identities=16% Similarity=0.143 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 005265 458 VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCA-CSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVD 536 (705)
Q Consensus 458 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 536 (705)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467788888888888999999999998532 2233444444444 333567777999999998875 456777888999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 537 LLGRAGCLDEAKTLIEAM-PMQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 537 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
.+.+.|+.+.|..+|++. ..-|. ...|...+..-.+.|+.+...++.+++.+..|++..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999987 32333 349999999999999999999999999999888544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00047 Score=52.99 Aligned_cols=80 Identities=20% Similarity=0.263 Sum_probs=41.2
Q ss_pred cCChHHHHHHHHHHHHCCC-CCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHH
Q 005265 470 NGYGTEALGLFKKMLLCGE-KPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEA 547 (705)
Q Consensus 470 ~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 547 (705)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++.. ...|. ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4566666666666666321 112333444566666666666666666651 11222 23333445566666666666
Q ss_pred HHHHHh
Q 005265 548 KTLIEA 553 (705)
Q Consensus 548 ~~~~~~ 553 (705)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666553
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.02 Score=55.94 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=64.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHH
Q 005265 464 IVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHA-GLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLL 538 (705)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~ 538 (705)
+..|...|++..|-+.+.++-+ .|... |++++|.+.|++...-+..... ..++..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 4556666666666555544433 45455 6666666666665433221111 33455666778
Q ss_pred HhcCChHHHHHHHHhCC---CC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 539 GRAGCLDEAKTLIEAMP---MQ-----PDAV-IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 539 ~~~g~~~~A~~~~~~~~---~~-----p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
.+.|++++|.++|++.. .. .+.. .+...+-++...||...|.+.+++..+.+|.-.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 88888888888887751 11 1111 122223345667888888888888888877543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.023 Score=48.95 Aligned_cols=133 Identities=11% Similarity=0.009 Sum_probs=100.8
Q ss_pred CCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHH
Q 005265 488 EKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP---DAVIW 563 (705)
Q Consensus 488 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 563 (705)
..|+...-..+..++...|+..+|...|++...- -+..|....-.+.++....+++.+|...++.. ...| ++...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 5677777777888888999999999999887542 23445777788888888899999999888876 2222 22233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
..+...+...|.+..|+..|+.++..-|+- ..-...+..+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 456677888999999999999999887764 3467788889999999888877666654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00016 Score=43.85 Aligned_cols=33 Identities=33% Similarity=0.627 Sum_probs=31.0
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCChhHHHH
Q 005265 583 AKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVR 615 (705)
Q Consensus 583 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 615 (705)
|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 788999999999999999999999999999863
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0021 Score=50.53 Aligned_cols=88 Identities=20% Similarity=0.189 Sum_probs=42.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIM 577 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 577 (705)
.+...|++++|...++.+.+. .|+ ...+..+...+...|++++|.+.++.. ...| +..++..+...+...|+++
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 333444444444444444321 121 233444444555555555555555443 1122 2335555555566666666
Q ss_pred HHHHHHHHHHhhCC
Q 005265 578 LGEYVAKKLLEIEP 591 (705)
Q Consensus 578 ~a~~~~~~~~~~~p 591 (705)
.|...+.++++..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 66666666665554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.16 Score=49.36 Aligned_cols=244 Identities=16% Similarity=0.152 Sum_probs=170.0
Q ss_pred HHHcCChHHHHHHHHHhhhCCCCcchh--hHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHH
Q 005265 360 YTQNGENEEALGLFRLLKRESVCPTHY--TFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYM 437 (705)
Q Consensus 360 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 437 (705)
-.-.|+++.|.+-|+.|... |... .+..|.-.-.+.|+.+.|+++-........ .-.....+.++..+
T Consensus 130 al~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-------~l~WA~~AtLe~r~ 199 (531)
T COG3898 130 ALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-------QLPWAARATLEARC 199 (531)
T ss_pred HHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-------CCchHHHHHHHHHH
Confidence 34579999999999999852 3222 233344444677888989888887776653 45567888999999
Q ss_pred hcCCHHHHHHHHHccC-----CCChh--HHHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccC
Q 005265 438 KCGSVEDGCRIFETMV-----ERDWV--SWNAMIVGCA---QNGYGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAG 506 (705)
Q Consensus 438 ~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g 506 (705)
..|+++.|+++.+.-. ++++. .--.|+.+-+ -..+...|...-.+..+ +.||.. .-.....++.+.|
T Consensus 200 ~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~ 277 (531)
T COG3898 200 AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDG 277 (531)
T ss_pred hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhcc
Confidence 9999999999998654 34433 1222322211 12346667666666665 788875 4555667899999
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005265 507 LVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM----PMQP-DAVIWGSLLAACKVHRNIMLGEY 581 (705)
Q Consensus 507 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 581 (705)
+..++-.+++.+.+. .|.+..+... .+.+.|+. ++.-+++. .++| +..+...+..+....|++..|..
T Consensus 278 ~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 278 NLRKGSKILETAWKA---EPHPDIALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred chhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 999999999988754 5666554432 34455553 33333322 2455 45577777888889999999999
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 005265 582 VAKKLLEIEPSNSGPYVLLSNMYAEL-GRWGEVVRVRKLMRKR 623 (705)
Q Consensus 582 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 623 (705)
-.+.+....|.. ++|..|+++-... |+-.++...+-+..+.
T Consensus 351 ~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 351 KAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 999999999976 5699999997665 9999999998777654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0052 Score=54.76 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 005265 457 WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD--HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTC 533 (705)
Q Consensus 457 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 533 (705)
...|..+...+...|++++|+..|++.+.....|. ..++..+...+...|++++|+..++.... +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 34556666666667777777777777665322221 12555566666666666666666665543 2333 334444
Q ss_pred HHHHHH
Q 005265 534 MVDLLG 539 (705)
Q Consensus 534 l~~~~~ 539 (705)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 444444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0074 Score=63.67 Aligned_cols=134 Identities=15% Similarity=0.034 Sum_probs=98.2
Q ss_pred CCCCChhhHHHHHHHHhc-----cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc--------CChHHHHHHHH
Q 005265 487 GEKPDHVTMIGVLCACSH-----AGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRA--------GCLDEAKTLIE 552 (705)
Q Consensus 487 g~~p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 552 (705)
+...|...|...+++... .+....|..+|+++.+ ..|+ ...|..+..+|... +++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345566788888887543 2347799999998874 5788 56666655544322 22344555554
Q ss_pred hC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 553 AM---P-MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 553 ~~---~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
+. + ...+...+.++.-.....|++++|...++++++++|+ ...|..++.++...|+.++|.+.+++.....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 43 1 2335667777766677789999999999999999995 6789999999999999999999999987644
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.22 Score=49.04 Aligned_cols=122 Identities=20% Similarity=0.181 Sum_probs=88.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcH
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLV 508 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 508 (705)
.+..+.-+...|+...|.++-.+..-|+..-|-..+.+++..++|++-.++... +-+++-|..++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455566778888899998888888888899999999999999877765432 22447788889999999999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005265 509 EEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAAC 570 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 570 (705)
.+|..+...+. +..-+..|.++|++.+|.+.--+.+ |...+..+..-|
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 99888877531 2445778889999998877755543 444444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.32 Score=50.41 Aligned_cols=184 Identities=13% Similarity=0.084 Sum_probs=130.0
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVL 499 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 499 (705)
+++...|...++.-.+.|+.+...-+|++..-| -...|-..+.-....|+.+-|..++....+-.++-...+-..-.
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 456678888899999999999999999998765 34467666666667799988888887766643332223322223
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHHHHH----HHHHH-
Q 005265 500 CACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAK---TLIEAM-PMQPDAVIWG----SLLAA- 569 (705)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~----~l~~~- 569 (705)
.-+-..|+.+.|..+++.+..+ . |+ ...-..-+....+.|..+.+. +++... +.+-+..+.. ....-
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 3355678999999999999765 3 66 444444456778889988888 555544 2222222222 22222
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005265 570 CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGR 609 (705)
Q Consensus 570 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 609 (705)
+...++.+.|..++.++.+..|++-..|..+++.....+.
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 4567899999999999999999999999999999877763
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0053 Score=50.21 Aligned_cols=88 Identities=17% Similarity=0.022 Sum_probs=59.9
Q ss_pred HHHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CCchHHHHHHHHH
Q 005265 534 MVDLLGRAGCLDEAKTLIEAM---PMQPD--AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS---NSGPYVLLSNMYA 605 (705)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 605 (705)
+..++...|+.++|+.+|++. +.... ...+-.+.+.+...|++++|..++++.+...|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345566677777777777765 22221 335556677788888888888888888877777 5555566777788
Q ss_pred hcCChhHHHHHHHHHH
Q 005265 606 ELGRWGEVVRVRKLMR 621 (705)
Q Consensus 606 ~~g~~~~A~~~~~~~~ 621 (705)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8888888887775544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0059 Score=47.91 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHccC--------ChHHHHHHHHHHHHcCCCCCChh
Q 005265 219 SWNSLITCYEQNGPASDALEVFVRMMASGI-EPDEVTLASVVSACASLA--------AFKEGLQIHARLMRCEKLRNDLV 289 (705)
Q Consensus 219 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 289 (705)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+...+.+|+.++..+ ++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~-lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNK-LKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhc-cCCcHH
Confidence 344556677777999999999999999999 999999999999887653 3446788899999888 999999
Q ss_pred HHHHHHHHHHh
Q 005265 290 LGNALVDMYAK 300 (705)
Q Consensus 290 ~~~~li~~~~~ 300 (705)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.003 Score=60.10 Aligned_cols=94 Identities=13% Similarity=0.079 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---chHHHH
Q 005265 529 DHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDA----VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS---GPYVLL 600 (705)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l 600 (705)
..|...+..+.+.|++++|...|+.+ ...|+. ..+..+...+...|++++|...|+++++..|+++ .++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555555667777777777766 223432 3556677777788888888888888887776644 345556
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 005265 601 SNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 601 ~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+.++...|++++|.++++++.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7778888888888888887764
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.16 Score=49.75 Aligned_cols=87 Identities=11% Similarity=-0.044 Sum_probs=52.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHC---CCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh
Q 005265 465 VGCAQNGYGTEALGLFKKMLLC---GEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGR 540 (705)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 540 (705)
.-..+.|++..|.+.|.+.+.. ..+|+...|.....+..+.|+.++|+.-.+... .+.|. ...|-.-..++.-
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHH
Confidence 3445677777777777777762 223333445555566677777777777766553 34443 3334444455556
Q ss_pred cCChHHHHHHHHhC
Q 005265 541 AGCLDEAKTLIEAM 554 (705)
Q Consensus 541 ~g~~~~A~~~~~~~ 554 (705)
.++|++|.+-|+..
T Consensus 334 le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777777665
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.27 Score=48.36 Aligned_cols=82 Identities=9% Similarity=0.109 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHH
Q 005265 292 NALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALG 371 (705)
Q Consensus 292 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 371 (705)
+..+.-+...|+...|.++-.+..-|+..-|-..+.+|+..++|++-.++... .++++-|..++..|.+.|+..+|..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 33344555566666666666666555555555555555555555555544332 3445555555555555555555555
Q ss_pred HHHH
Q 005265 372 LFRL 375 (705)
Q Consensus 372 ~~~~ 375 (705)
+..+
T Consensus 259 yI~k 262 (319)
T PF04840_consen 259 YIPK 262 (319)
T ss_pred HHHh
Confidence 5443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.005 Score=62.15 Aligned_cols=118 Identities=13% Similarity=0.132 Sum_probs=88.9
Q ss_pred CCChhhHHHHHHHhhcCCChHHHHHHHhccCC-CC-----cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHH
Q 005265 183 SSDVYMGSALIDMYGKCGRVSCARRVFDGMRE-RN-----IVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLA 256 (705)
Q Consensus 183 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 256 (705)
+.+......+++......+++.+..++.+... |+ ..|..++|+.|.+.|..+.++++++.=..-|+-||..|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 44555566666766666777777777766653 21 2345688999999999999999999888899999999999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhc
Q 005265 257 SVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKC 301 (705)
Q Consensus 257 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 301 (705)
.++..+.+.|++..|.++...++..+ ...+..++..-+..+.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe-~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQE-EFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHh
Confidence 99999999999999999998888877 555556655555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00061 Score=49.87 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=30.8
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH
Q 005265 504 HAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIW 563 (705)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 563 (705)
..|++++|.++|+.+... .| +...+..++.+|.+.|++++|.++++++ ...|+...|
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 456666666666666543 23 3555555666666666666666666655 334443333
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.061 Score=55.40 Aligned_cols=105 Identities=19% Similarity=0.260 Sum_probs=61.0
Q ss_pred cHHHHHHHHHhCCChHHHHHHH---------HHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHH--HHHHHHcCCCCCh
Q 005265 118 SWNSMVSGFAQHDRFSEALGYF---------VKMHSENFALSEYSFGSALSACAGSVDFKMGTQV--HALLSKSRYSSDV 186 (705)
Q Consensus 118 ~~~~li~~~~~~~~~~~a~~~~---------~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~ 186 (705)
.+.+-+-.|...|.+++|..+- +.+... ..+...|+..=++|.+.++..--+-+ ++++.++|-.|+.
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~ 635 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND 635 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence 3444445556666666665431 111111 12334455556667666665544333 4466777777765
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005265 187 YMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMA 245 (705)
Q Consensus 187 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 245 (705)
.. +...++-.|++.+|.++|.+ +|.-..|+++|.+|+-
T Consensus 636 iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRM 673 (1081)
T KOG1538|consen 636 LL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRM 673 (1081)
T ss_pred HH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHH
Confidence 53 33456667888888888755 6677777777777653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0022 Score=63.99 Aligned_cols=65 Identities=11% Similarity=-0.088 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch---HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 559 DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP---YVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+...|+.+..+|...|++++|...|+++++++|++..+ |.+++.+|.++|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566666666667777777777777777777766533 667777777777777777777666653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.16 Score=50.48 Aligned_cols=165 Identities=16% Similarity=0.109 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCCC-------ChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChhhHH
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVER-------DWVSWNAMIVGCAQ---NGYGTEALGLFKKMLLCGEKPDHVTMI 496 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~ 496 (705)
.+...++-.|....+++.-+++.+.+... ....-....-++.+ .|+.++|++++..+....-.++..||.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34445666788999999999999988753 22223334556667 889999999999977766777778887
Q ss_pred HHHHHHhc---------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC-hH---HHHHHH---Hh-C-----
Q 005265 497 GVLCACSH---------AGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGC-LD---EAKTLI---EA-M----- 554 (705)
Q Consensus 497 ~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~-~----- 554 (705)
.+.+.|-. ....++|+..|. +.+.+.|+..+--.++-.+.-.|. .+ +..++- .. .
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~---kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYR---KGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHH---HHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 77765532 334778888887 445666764433333333333443 11 222222 11 1
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 555 -PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 555 -~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
.-..|...+.+++.++.-.|+++.|.+.++++.++.|+..
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 1234666777888899999999999999999999987764
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0044 Score=60.38 Aligned_cols=63 Identities=16% Similarity=0.072 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 560 AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 560 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
..+++.|..+|.+.+++..|++...++++++|+|..+...-+.+|...|.++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 446777888889999999999999999999999999999999999999999999999999985
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.36 Score=47.89 Aligned_cols=93 Identities=16% Similarity=0.269 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCCh---hhHHHHHHHHHhcCChhHHHHHHhcC
Q 005265 35 VSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNV---FTWNSIITGLLKWGFIDDASRLFASM 111 (705)
Q Consensus 35 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~ 111 (705)
+.+-+++-+++... +-|...|-+|+.-|...|..++.++++++|..|-+ .+|...+++=....++.....+|.+.
T Consensus 25 ~~D~lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rC 102 (660)
T COG5107 25 HGDELRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRC 102 (660)
T ss_pred CchHHHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHH
Confidence 33445777777654 57888999999999999999999999999998754 47888887777778888888888776
Q ss_pred CCC--CcccHHHHHHHHHhC
Q 005265 112 PER--DQCSWNSMVSGFAQH 129 (705)
Q Consensus 112 ~~~--~~~~~~~li~~~~~~ 129 (705)
... +...|..-+..-.+-
T Consensus 103 L~k~l~ldLW~lYl~YIRr~ 122 (660)
T COG5107 103 LKKSLNLDLWMLYLEYIRRV 122 (660)
T ss_pred HhhhccHhHHHHHHHHHHhh
Confidence 543 555666666555443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0089 Score=60.42 Aligned_cols=120 Identities=15% Similarity=0.077 Sum_probs=86.1
Q ss_pred CCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHc--CCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC----CCcch
Q 005265 146 NFALSEYSFGSALSACAGSVDFKMGTQVHALLSKS--RYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE----RNIVS 219 (705)
Q Consensus 146 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~ 219 (705)
+.+.++.....+++.+....+++.+..++-..... ....-..+..+++..|.+.|..+.++.++..=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456666777777777777777777777666654 2222334456788888888888888887766554 77788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHcc
Q 005265 220 WNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASL 265 (705)
Q Consensus 220 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 265 (705)
+|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888777777777877777776554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.019 Score=49.38 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=91.1
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CC
Q 005265 520 KEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM---PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS--NS 594 (705)
Q Consensus 520 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~ 594 (705)
++..+.|+...-..|..++.+.|+..||...|++. ...-|......+..+....++...|...++++.+.+|. .+
T Consensus 81 ~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 81 EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 44456788888889999999999999999999987 34568888999999999999999999999999998775 45
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 595 GPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 595 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
.....++..|...|++++|+..|+...+.-
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 567889999999999999999999988654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0017 Score=47.56 Aligned_cols=65 Identities=17% Similarity=0.144 Sum_probs=51.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 005265 527 LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHR-NIMLGEYVAKKLLEIEP 591 (705)
Q Consensus 527 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 591 (705)
+...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|.+.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777788888888888888888876 4455 4567788888888888 79999999999999887
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.014 Score=49.52 Aligned_cols=28 Identities=11% Similarity=-0.037 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
.+-.+..++...|+.+.|++.|+.++..
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3333333444444444444444444433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.029 Score=45.96 Aligned_cols=108 Identities=13% Similarity=0.064 Sum_probs=62.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhCCCCcch--hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHH
Q 005265 355 ALIAGYTQNGENEEALGLFRLLKRESVCPTH--YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSL 432 (705)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 432 (705)
.+..++-..|+.++|+.+|++....|..... ..+..+-+++...|++++|..+++........ .+.+..+...+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~----~~~~~~l~~f~ 81 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD----DELNAALRVFL 81 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----ccccHHHHHHH
Confidence 3556777888888899888888887765542 34555566677777777777777777654220 01122222223
Q ss_pred HHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHH
Q 005265 433 IDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVG 466 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 466 (705)
.-++...|+.++|.+.+-...-++...|..-|..
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ 115 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALAETLPRYRRAIRF 115 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666554433333333333333
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0015 Score=49.33 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC---CCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 561 VIWGSLLAACKVHRNIMLGEYVAKKLLEI----EPS---NSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+++.+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35666777777888888888888877754 222 234577888888889999999888887653
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.11 Score=53.64 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=58.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcC
Q 005265 254 TLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKAS 333 (705)
Q Consensus 254 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 333 (705)
+...+..-+.+...+..|.++|..+-.. ..++++....+++++|..+-+..++--...|.....-++...
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 3333333444555666666666654332 356677777777777777766666544444444444455555
Q ss_pred CHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhC
Q 005265 334 SVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRE 379 (705)
Q Consensus 334 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 379 (705)
++++|.+ +|.+.|+..+|..+++++...
T Consensus 819 rFeEAqk------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 819 RFEEAQK------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHHH------------------HHHHhcchHHHHHHHHHhhhh
Confidence 5555544 445677788888888877654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.016 Score=45.63 Aligned_cols=80 Identities=16% Similarity=0.158 Sum_probs=67.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCC-CcchhhHHHHHHHHhhcc--------cHHHHHHHHHHHHHhCCCCCCCCC
Q 005265 353 WNALIAGYTQNGENEEALGLFRLLKRESV-CPTHYTFGNLLNACANLA--------DLQLGRQAHTHVVKHGLRFLSGEE 423 (705)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 423 (705)
....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.++..++ +
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~l------K 101 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKL------K 101 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhcc------C
Confidence 34567777788999999999999999999 999999999999987653 34567788899999998 8
Q ss_pred CcHhHHHHHHHHHHh
Q 005265 424 SDIFVGNSLIDMYMK 438 (705)
Q Consensus 424 ~~~~~~~~li~~~~~ 438 (705)
|+..+|+.++..+.+
T Consensus 102 P~~etYnivl~~Llk 116 (120)
T PF08579_consen 102 PNDETYNIVLGSLLK 116 (120)
T ss_pred CcHHHHHHHHHHHHH
Confidence 999999999887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0059 Score=54.36 Aligned_cols=89 Identities=11% Similarity=0.149 Sum_probs=66.6
Q ss_pred CCCcccHHHHHHHHHh-----CCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCC----------------CcHHHH
Q 005265 113 ERDQCSWNSMVSGFAQ-----HDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSV----------------DFKMGT 171 (705)
Q Consensus 113 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------------~~~~a~ 171 (705)
.+|..+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.||+.+-+.. +-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3455566666666653 4677777788888999999999999999998875432 234578
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhhcCCC
Q 005265 172 QVHALLSKSRYSSDVYMGSALIDMYGKCGR 201 (705)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 201 (705)
+++++|...|+-||..++..|++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888888876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.76 Score=48.84 Aligned_cols=337 Identities=12% Similarity=0.004 Sum_probs=155.1
Q ss_pred HHHcCCCCchhhHH-----HHHHHHHccCChhhHHHHHhccCCCC---hhhHHHHHHHHHhcCC---hhHHHHHHhcCCC
Q 005265 45 IIKSQFASEIFIQN-----RLIDVYAKCGCLYGARKVFDKMSNKN---VFTWNSIITGLLKWGF---IDDASRLFASMPE 113 (705)
Q Consensus 45 ~~~~~~~~~~~~~~-----~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~ 113 (705)
+...|++.+-.-|. .+++-+...+.+..|.++-..+..|. ..+|.....-+.+..+ -+-+..+-+++..
T Consensus 423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 33445555444443 34666666777777777777666554 3445555555554422 2223333333433
Q ss_pred --CCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCC----CChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChh
Q 005265 114 --RDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFA----LSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVY 187 (705)
Q Consensus 114 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 187 (705)
....+|..+.+..-..|+++-|..+++.=...+.+ .+..-+...+.-+...|+.+....++-.+...- +..
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s 579 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRS 579 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHH
Confidence 34556777777777777777777776543332211 133345566666777777777666665554431 111
Q ss_pred hHHHHHHHhhcCCChHHHHHHHhccCC-CCcchHHHHHHHHHhcCChhHHHHHHH--H----HHHCCCCCCHhHHHHHHH
Q 005265 188 MGSALIDMYGKCGRVSCARRVFDGMRE-RNIVSWNSLITCYEQNGPASDALEVFV--R----MMASGIEPDEVTLASVVS 260 (705)
Q Consensus 188 ~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~----m~~~g~~p~~~t~~~ll~ 260 (705)
.+...+ .+...|..++.+..+ .|..+ +-..| ..++-..++..|. . -...|..|+.. ....
T Consensus 580 ~l~~~l------~~~p~a~~lY~~~~r~~~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~ 646 (829)
T KOG2280|consen 580 SLFMTL------RNQPLALSLYRQFMRHQDRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALK---TAAN 646 (829)
T ss_pred HHHHHH------HhchhhhHHHHHHHHhhchhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHH
Confidence 111111 111222222222111 11000 00000 0000000000000 0 00011122211 1122
Q ss_pred HHHccCChH----------HHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHH
Q 005265 261 ACASLAAFK----------EGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYA 330 (705)
Q Consensus 261 ~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 330 (705)
++++..... .-..+.+.+...-+......+.+--+.-+...|+...|.++-.+..-||-..|-.-+.+++
T Consensus 647 ~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa 726 (829)
T KOG2280|consen 647 AFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALA 726 (829)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 222221111 0111111111111112222233334444556677777777777777676666666667777
Q ss_pred hcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHH
Q 005265 331 KASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAH 408 (705)
Q Consensus 331 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 408 (705)
..+++++-+++-++... +.-|.-+..+|.+.|+.++|.+++.+... +.-...+|.+.|++.+|.+.-
T Consensus 727 ~~~kweeLekfAkskks--PIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 727 DIKKWEELEKFAKSKKS--PIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hhhhHHHHHHHHhccCC--CCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHH
Confidence 77777666655554433 56666677777777777777776654321 113445666666666655543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0019 Score=42.10 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005265 561 VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSN 602 (705)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 602 (705)
.+|..+...+...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788889999999999999999999999999988877764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.19 Score=47.55 Aligned_cols=175 Identities=13% Similarity=0.092 Sum_probs=106.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhH---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHH
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMVER---DWVS---WNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH--VTMIG 497 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ 497 (705)
....-.....+...|++++|.+.|+.+... +... .-.++.+|.+.+++++|...+++.++ ..|+. ..+..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~ 109 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVL 109 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHH
Confidence 333334455566778888888888887642 1222 23456677788888888888888887 44543 23333
Q ss_pred HHHHHhc--c---------------Cc---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 005265 498 VLCACSH--A---------------GL---VEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQ 557 (705)
Q Consensus 498 ll~~~~~--~---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 557 (705)
.+.+.+. . .+ ...|...|+.+++.+ |+ +.-..+|...+..+.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~-- 171 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLK-- 171 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHH--
Confidence 4433331 1 01 123444444444332 22 233344444333331
Q ss_pred CCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc---hHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 558 PDAVIWG--SLLAACKVHRNIMLGEYVAKKLLEIEPSNSG---PYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 558 p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
+...-. .+..-|.+.|.+..|..-++.+++.-|+.+. +...++..|.+.|..++|..+...+.
T Consensus 172 -~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 172 -DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 111111 3344588899999999999999998777554 46688899999999999999877654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.042 Score=53.39 Aligned_cols=126 Identities=14% Similarity=0.094 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHH-HhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHH
Q 005265 352 SWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNA-CANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGN 430 (705)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (705)
+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.- +.+...+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-------~~~~~~~~ 74 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-------PSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-------TT-HHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-------CCCHHHHH
Confidence 35555555555555566666666555332 1122222222222 222344555666665555542 34555566
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005265 431 SLIDMYMKCGSVEDGCRIFETMVER------DWVSWNAMIVGCAQNGYGTEALGLFKKMLL 485 (705)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 485 (705)
..++.+.+.|+.+.|..+|++.... -...|...+.-=.+.|+.+.+.++.+++.+
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666666655432 223555555555556666666666665555
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.015 Score=51.86 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=69.6
Q ss_pred HHHHcc--CCCChhHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc--------------
Q 005265 447 RIFETM--VERDWVSWNAMIVGCAQ-----NGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHA-------------- 505 (705)
Q Consensus 447 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------------- 505 (705)
..|+.. ..++..+|..++..|.+ +|..+=....++.|.+-|+.-|..+|+.||+.+-+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 445554 35677788888887775 467777788888999999999999999999887652
Q ss_pred --CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 005265 506 --GLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGC 543 (705)
Q Consensus 506 --g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 543 (705)
.+-+-|++++++| +.+|+.||.+++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 2235667777777 445777777777777777766553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.02 Score=54.49 Aligned_cols=101 Identities=11% Similarity=0.061 Sum_probs=60.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHH
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP----DAVIWGSLLA 568 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~ 568 (705)
|...+......|++++|...|+.+.+.+.-.+- ...+-.+..+|...|++++|...|+.+ ...| ....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334456666666666666554311110 234555666666777777777766665 1122 2344555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 569 ACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 569 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
.+...|+.+.|.+.|+++++..|++..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 677889999999999999998887753
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.61 Score=45.52 Aligned_cols=239 Identities=18% Similarity=0.141 Sum_probs=135.0
Q ss_pred cCChHHHHHHHhhCCCCCcc---cHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeehHHHHHHHHHHcCChHHHHHHHH
Q 005265 301 CGKLNEARCVFDRMPIRNVV---SETSMVSGYAKASSVKSARLMFTKMLE---RNVVSWNALIAGYTQNGENEEALGLFR 374 (705)
Q Consensus 301 ~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 374 (705)
.|+++.|.+-|+.|...... -...|.-.-.+.|..+.|...-+..-. .-...+...+...|..|+|+.|+++++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 46666666666666532111 111222223355666666666665533 234567888999999999999999998
Q ss_pred HhhhCC-CCcchhh--HHHHHHHHh---hcccHHHHHHHHHHHHHhCCCCCCCCCCcHh-HHHHHHHHHHhcCCHHHHHH
Q 005265 375 LLKRES-VCPTHYT--FGNLLNACA---NLADLQLGRQAHTHVVKHGLRFLSGEESDIF-VGNSLIDMYMKCGSVEDGCR 447 (705)
Q Consensus 375 ~m~~~g-~~p~~~t--~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~ 447 (705)
.-+... +.++..- -..|+.+-. -..+...|+..-.+..+.. |+.. .--.-..++.+.|++.++-.
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~--------pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLA--------PDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--------CccchHHHHHHHHHHhccchhhhhh
Confidence 766543 3444321 222222211 1224555555555555543 2322 22233466778888888888
Q ss_pred HHHccCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 005265 448 IFETMVE--RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLC-GEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHG 523 (705)
Q Consensus 448 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 523 (705)
+++.+-+ |.+..+.. -.+.+.| +.++.-+++.... .++||. .....+..+....|++..|..--+... .
T Consensus 285 ilE~aWK~ePHP~ia~l--Y~~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r 357 (531)
T COG3898 285 ILETAWKAEPHPDIALL--YVRARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---R 357 (531)
T ss_pred HHHHHHhcCCChHHHHH--HHHhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---h
Confidence 8887753 44443332 2233344 3444444443321 266665 456666677777777777776655443 3
Q ss_pred CCCChhHHHHHHHHHHhc-CChHHHHHHHHhC
Q 005265 524 LAPLKDHYTCMVDLLGRA-GCLDEAKTLIEAM 554 (705)
Q Consensus 524 ~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 554 (705)
..|....|..|.+.-... |+-.++...+-+.
T Consensus 358 ~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 358 EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 467777777777765443 7777777776665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0054 Score=45.54 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=49.5
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 005265 536 DLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPY 597 (705)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 597 (705)
.+|.+.+++++|.+.++.+ ...| +...|......+...|++++|.+.++++++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 5678888888888888887 4455 455677777778899999999999999999999876543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.73 Score=46.02 Aligned_cols=121 Identities=17% Similarity=0.123 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHccCC---CChhHHHHHHH----HHHH---cCChHHHHHHHHHHHHCCCCCChhh----HHHHHHH--Hh
Q 005265 440 GSVEDGCRIFETMVE---RDWVSWNAMIV----GCAQ---NGYGTEALGLFKKMLLCGEKPDHVT----MIGVLCA--CS 503 (705)
Q Consensus 440 g~~~~A~~~~~~~~~---~~~~~~~~li~----~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~----~~~ll~~--~~ 503 (705)
+.-++|+++++.+.+ .|...-|.... .|.+ .....+-+.+-+-+.+.|+.|-.+. -+.+.+| +.
T Consensus 394 ~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred CccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 336777777776652 34443333221 2221 2234444555555666788775432 3333333 45
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 005265 504 HAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGS 565 (705)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 565 (705)
..|++.++.-+-..+. .+.|++.+|..+.-++....++++|...+...| |+..++++
T Consensus 474 sqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred hcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 6899999987776664 478999999999999999999999999999985 46665554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0014 Score=53.27 Aligned_cols=46 Identities=39% Similarity=0.820 Sum_probs=39.3
Q ss_pred ceeEEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHHHHcCcccCCC-cccccccccc
Q 005265 630 GCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVPNAS-DDEAYEEQNG 687 (705)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~~~~-~~~~~~~~~~ 687 (705)
|++|+++ |.|.++|..||+. ++..++...||.|++. ++++++++++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~ 48 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEK 48 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhh
Confidence 6889887 8999999999988 4667888899999999 8888887665
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=1 Score=47.32 Aligned_cols=199 Identities=10% Similarity=0.050 Sum_probs=101.5
Q ss_pred CCChhhHHHHHHHhhcCCChHHHHHHHhccCC-CCcchHHHH----------HHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 005265 183 SSDVYMGSALIDMYGKCGRVSCARRVFDGMRE-RNIVSWNSL----------ITCYEQNGPASDALEVFVRMMASGIEPD 251 (705)
Q Consensus 183 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l----------i~~~~~~g~~~~A~~~~~~m~~~g~~p~ 251 (705)
.|.+..|..|.....+.-.++.|...|-+... +.+..-.-| ...-+--|.+++|.++|-+|-...+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 46666777776666666666666666655543 222111101 0111224677777777766654321
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHH
Q 005265 252 EVTLASVVSACASLAAFKEGLQIHARLMRCEKLRND----LVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVS 327 (705)
Q Consensus 252 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 327 (705)
.+....+.|++-...++++ .|+-..| ...++.+.+.+.....+++|.+.|..-.. -...+.
T Consensus 766 ------Aielr~klgDwfrV~qL~r----~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~e 830 (1189)
T KOG2041|consen 766 ------AIELRKKLGDWFRVYQLIR----NGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIE 830 (1189)
T ss_pred ------hHHHHHhhhhHHHHHHHHH----ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHH
Confidence 2333445555555444432 2212222 23556666666666666666665543221 012333
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHH
Q 005265 328 GYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQA 407 (705)
Q Consensus 328 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 407 (705)
.|.+...+++-+.+-..+++ +....-.+..++.+.|.-++|.+.|-+-- .| ...+..|...+++.+|.++
T Consensus 831 cly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred HHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443 34445567777777888777777664321 12 1234566666666666555
Q ss_pred HH
Q 005265 408 HT 409 (705)
Q Consensus 408 ~~ 409 (705)
-+
T Consensus 901 aq 902 (1189)
T KOG2041|consen 901 AQ 902 (1189)
T ss_pred HH
Confidence 43
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.022 Score=55.34 Aligned_cols=128 Identities=14% Similarity=0.063 Sum_probs=87.6
Q ss_pred hHHHHHHHHhhcccHHHHHHHHHHHH----HhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC-------CC
Q 005265 387 TFGNLLNACANLADLQLGRQAHTHVV----KHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV-------ER 455 (705)
Q Consensus 387 t~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~ 455 (705)
.|..+-+.|.-.|+++.|...++.-. +.|-+ ......+..+.+++.-.|+++.|.+.|+... .+
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr-----AaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r 271 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR-----AAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR 271 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH-----HHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch
Confidence 45555566666788998888876543 22321 2344677788899999999999998887642 22
Q ss_pred --ChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CC-CCCChhhHHHHHHHHhccCcHHHHHHHHHHhH
Q 005265 456 --DWVSWNAMIVGCAQNGYGTEALGLFKKMLL----CG-EKPDHVTMIGVLCACSHAGLVEEGRKYFSSMS 519 (705)
Q Consensus 456 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 519 (705)
...+.-+|.+.|.-..+++.|+.++.+-+. .+ ..-....+.++..++...|..++|+.+.+.-.
T Consensus 272 ~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 272 TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 233556678888888889999988876443 11 11233578888888888898888887765443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.11 Score=47.47 Aligned_cols=194 Identities=12% Similarity=0.028 Sum_probs=103.3
Q ss_pred CchhhHHHHHHHHHccCChhhHHHHHhccC---CCCh---------------------------------hhHHHHHHHH
Q 005265 52 SEIFIQNRLIDVYAKCGCLYGARKVFDKMS---NKNV---------------------------------FTWNSIITGL 95 (705)
Q Consensus 52 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~---------------------------------~~~~~li~~~ 95 (705)
.....|+.-+.++.+....++|..-++.+- .||. .-|++|++.+
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~ 146 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 146 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 334566777888889888888876655442 2211 1133444433
Q ss_pred HhcCChhHHHHHHhcCCCC--Cc--------ccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCC
Q 005265 96 LKWGFIDDASRLFASMPER--DQ--------CSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSV 165 (705)
Q Consensus 96 ~~~g~~~~A~~~~~~~~~~--~~--------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 165 (705)
.-..-+++-+..|+.-..| .+ ..-+.+++.+.-.|.+.-.++++.+..+...+.++.....+.+.-.+.|
T Consensus 147 ~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G 226 (366)
T KOG2796|consen 147 KLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG 226 (366)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc
Confidence 3333333333333332221 11 1234455555556666666666666666655556666666666666667
Q ss_pred CcHHHHHHHHHHHHcCCCCChhhHHHH-----HHHhhcCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHH
Q 005265 166 DFKMGTQVHALLSKSRYSSDVYMGSAL-----IDMYGKCGRVSCARRVFDGMRE---RNIVSWNSLITCYEQNGPASDAL 237 (705)
Q Consensus 166 ~~~~a~~~~~~~~~~g~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 237 (705)
|.+.|...++...+..-..+....+.+ ...|.-..++..|.+.|++++. .|+..-|.-.-+..-.|+..+|+
T Consensus 227 D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 227 DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHH
Confidence 777777766655543322233222222 2334445566666666666654 23334444333444456666666
Q ss_pred HHHHHHHH
Q 005265 238 EVFVRMMA 245 (705)
Q Consensus 238 ~~~~~m~~ 245 (705)
+.++.|++
T Consensus 307 K~~e~~~~ 314 (366)
T KOG2796|consen 307 KQLEAMVQ 314 (366)
T ss_pred HHHHHHhc
Confidence 66666665
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.76 Score=43.51 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=31.2
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCCCcchh-h---HHHHHHHHhhcccHHHHHHHHHHHHHhC
Q 005265 356 LIAGYTQNGENEEALGLFRLLKRESVCPTHY-T---FGNLLNACANLADLQLGRQAHTHVVKHG 415 (705)
Q Consensus 356 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t---~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 415 (705)
....+...|++++|+..|+.+...- |+.. . .-.+..++.+.++++.|...++..++..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 4444556677777777777666532 2221 1 1233344555666666666666665554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.26 Score=45.27 Aligned_cols=165 Identities=12% Similarity=0.094 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCC--C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh--hHHHHHH
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVE--R----DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV--TMIGVLC 500 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~ 500 (705)
.-.....+...|++++|.+.|+.+.. | -..+.-.++.++.+.|+++.|...+++.++. -|+.. .+...+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHH
Confidence 33445566778889999999888863 2 2335566778888889999999999988873 44432 2232232
Q ss_pred HHhcc-------------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH--H
Q 005265 501 ACSHA-------------GLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWG--S 565 (705)
Q Consensus 501 ~~~~~-------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~--~ 565 (705)
+.+.. +...+|...|+.+ +.-|=.+....+|...+..+. +...-. .
T Consensus 86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l----------------i~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ 146 (203)
T PF13525_consen 86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEEL----------------IKRYPNSEYAEEAKKRLAELR---NRLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHH-TT---HHHHHHHHHHHHH----------------HHH-TTSTTHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHhCccchhcccChHHHHHHHHHHHHH----------------HHHCcCchHHHHHHHHHHHHH---HHHHHHHHH
Confidence 22211 1122333444433 334444444555555444432 111111 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCch---HHHHHHHHHhcCChhHHH
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEIEPSNSGP---YVLLSNMYAELGRWGEVV 614 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~ 614 (705)
+...|.+.|.+..|..-++.+++..|+.... ...++..|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3455889999999999999999999986643 567888899999888444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.42 Score=43.94 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 005265 461 NAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH----VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVD 536 (705)
Q Consensus 461 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 536 (705)
-.....+...|++.+|.+.|+++... -|+. .....++.++.+.|+++.|...++...+.+.-.|.. .+...+.
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~ 85 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYML 85 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHH
Confidence 33455566777788888888777764 2322 245556667777777777777777777665444432 1111111
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch-----------------HHH
Q 005265 537 LLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP-----------------YVL 599 (705)
Q Consensus 537 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------------~~~ 599 (705)
+.+......... ......+....|...|+.+++..|++... -..
T Consensus 86 g~~~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ 146 (203)
T PF13525_consen 86 GLSYYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111100000 01122334556777777777777776543 235
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 005265 600 LSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 600 l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
++..|.+.|++..|..-++.+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH
Confidence 78889999999999999999874
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0048 Score=46.56 Aligned_cols=61 Identities=21% Similarity=0.164 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 529 DHYTCMVDLLGRAGCLDEAKTLIEAM-------P-MQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
.+++.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44556666666666666666666554 1 1122 446677777788888888888888887764
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.36 Score=44.35 Aligned_cols=93 Identities=12% Similarity=0.023 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCC--Chh--------HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVER--DWV--------SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGV 498 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 498 (705)
+++|...+.-..-+++-+..++.-..+ .+. .-+.++..+.-.|.+.-.+.++++.++..-+-+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 455555555544455555555433221 222 2344555566667777778888888875444455566667
Q ss_pred HHHHhccCcHHHHHHHHHHhHHh
Q 005265 499 LCACSHAGLVEEGRKYFSSMSKE 521 (705)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~ 521 (705)
.+.-.+.|+.+.|..+|++..+.
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~ 241 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKV 241 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH
Confidence 77777788888888888876544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.077 Score=53.44 Aligned_cols=62 Identities=6% Similarity=-0.090 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 005265 559 DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLM 620 (705)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 620 (705)
|+.....+..+....++++.|...|+++..++|+.+..|...++.+.-.|+.++|.+.+++.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444444555555555555555555555555555555555555555555553
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.056 Score=52.98 Aligned_cols=138 Identities=13% Similarity=-0.036 Sum_probs=102.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 005265 464 IVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGC 543 (705)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 543 (705)
.+.|.+.|++..|...|++.+.. -+. ...-+.++...... .-..++..|.-+|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~~-----------~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LEY-----------RRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hhc-----------cccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 46677888888888888887662 111 11111122222211 123456778889999999
Q ss_pred hHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHH-HHHHHHH
Q 005265 544 LDEAKTLIEAM-PMQ-PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEV-VRVRKLM 620 (705)
Q Consensus 544 ~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 620 (705)
+.+|++..+.. ..+ +|...+..=..+|...|+++.|+..|+++++++|+|-.+-..|+.+-.+...+.+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988876 444 56778888888899999999999999999999999988888888888887776654 8899999
Q ss_pred HhC
Q 005265 621 RKR 623 (705)
Q Consensus 621 ~~~ 623 (705)
..+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 764
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.17 E-value=2.3 Score=45.41 Aligned_cols=109 Identities=18% Similarity=0.183 Sum_probs=79.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcH
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLV 508 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 508 (705)
.+--+.-+...|+..+|.++-.+..-||-..|---+.+++..+++++-+++-+.+. .+.-|.....+|.+.|+.
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccH
Confidence 34445556677888889988888888888888888888888888887666654432 255677788889999999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 005265 509 EEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEA 553 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (705)
++|.+++-... |. .-.+.+|.+.|++.+|.++--+
T Consensus 761 ~EA~KYiprv~---~l-------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 761 DEAKKYIPRVG---GL-------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhhhhhccC---Ch-------HHHHHHHHHhccHHHHHHHHHH
Confidence 99988887442 11 1457788888888888776443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.028 Score=48.60 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+...++..+...|++++|...+++++..+|-+...|..++.+|...|+..+|.++|+++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556677788999999999999999999999999999999999999999999999998864
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.16 Score=42.49 Aligned_cols=88 Identities=15% Similarity=0.131 Sum_probs=60.2
Q ss_pred HHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch---HHHHHHHHHh
Q 005265 535 VDLLGRAGCLDEAKTLIEAM----PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP---YVLLSNMYAE 606 (705)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~ 606 (705)
.....+.|++++|.+.|+.+ +..| ....-..|+.++.+.+++++|...+++.++++|.++.+ +...+-++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 44455678888888888877 2222 34456678888999999999999999999998887653 4444444555
Q ss_pred cCC---------------hhHHHHHHHHHHh
Q 005265 607 LGR---------------WGEVVRVRKLMRK 622 (705)
Q Consensus 607 ~g~---------------~~~A~~~~~~~~~ 622 (705)
+.. ..+|..-|+.+.+
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 444 5556666665554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.078 Score=42.78 Aligned_cols=90 Identities=19% Similarity=0.116 Sum_probs=72.9
Q ss_pred HHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCC---chHHHHHHHHHhcCC
Q 005265 536 DLLGRAGCLDEAKTLIEAM-PMQ-PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIE-PSNS---GPYVLLSNMYAELGR 609 (705)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~ 609 (705)
-++...|+++.|++.|.+. .+- .+...||.-..+++-+|+.++|..-+++++++. |..- ..|..-+.+|-..|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567788999999988876 333 367789999999999999999999999999984 4322 247788889999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 005265 610 WGEVVRVRKLMRKRGV 625 (705)
Q Consensus 610 ~~~A~~~~~~~~~~~~ 625 (705)
.+.|+.-|+..-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999998877663
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.64 Score=37.88 Aligned_cols=141 Identities=15% Similarity=0.092 Sum_probs=85.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDE 546 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 546 (705)
+.-.|..++..++..+.... .+..-++-++.-....-+-+-..+.++.+-+-+. ...+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFD--------------is~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFD--------------ISKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS---------------GGG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcC--------------chhhcchHH
Confidence 34467777888888777663 2333455555444444445555566665533222 234556666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005265 547 AKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVV 626 (705)
Q Consensus 547 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 626 (705)
....+-.++ .+.......++....+|+-+.-.+++..+.+.+..++.....++.+|.+.|+..++-+++++.-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 555555553 233445566778889999999999999998766667788999999999999999999999999998873
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.93 E-value=2.1 Score=42.83 Aligned_cols=135 Identities=12% Similarity=0.036 Sum_probs=104.3
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH-HH
Q 005265 455 RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCG-EKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDH-YT 532 (705)
Q Consensus 455 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~ 532 (705)
+-...|...++.-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|-.+|+.-.+.+ ||... -+
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~ 470 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKE 470 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHH
Confidence 445678888888888888999999999999988 5677778888887655 578888999998766543 45333 34
Q ss_pred HHHHHHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 005265 533 CMVDLLGRAGCLDEAKTLIEAM--PMQPD--AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN 593 (705)
Q Consensus 533 ~l~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 593 (705)
-.+.-+.+.++-+.|..+|+.. .+..+ ...|..++..-..-|+...+..+-+++.+..|..
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 4566678889999999999965 23333 5578888888888999999999888888888865
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.69 Score=46.89 Aligned_cols=159 Identities=11% Similarity=0.066 Sum_probs=106.9
Q ss_pred hHH--HHHHHHHHHc-----CChHHHHHHHHHHHH-CCCCCChh-hHHHHHHHHhc---------cCcHHHHHHHHHHhH
Q 005265 458 VSW--NAMIVGCAQN-----GYGTEALGLFKKMLL-CGEKPDHV-TMIGVLCACSH---------AGLVEEGRKYFSSMS 519 (705)
Q Consensus 458 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~-~~~~ll~~~~~---------~g~~~~a~~~~~~~~ 519 (705)
..| ..++.+.... ...+.|+.+|.+... ..+.|+.. .|..+..++.. .....+|.++-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 5566655442 234578888998882 23667653 44443333221 234455666666554
Q ss_pred HhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 005265 520 KEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP 596 (705)
Q Consensus 520 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 596 (705)
.+.|+ ......+..++.-.|+++.|..+|++. .+.|| ..+|......+.-.|+.++|.+.++++++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 44554 777778888888889999999999998 56776 4466666666888999999999999999999987765
Q ss_pred HHHHHHH-HHhcCChhHHHHHHHH
Q 005265 597 YVLLSNM-YAELGRWGEVVRVRKL 619 (705)
Q Consensus 597 ~~~l~~~-~~~~g~~~~A~~~~~~ 619 (705)
-..-.++ ..-....++|.+++-+
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 409 VVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcCCchhhhHHHHhh
Confidence 5444444 3334557788887754
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.17 Score=48.01 Aligned_cols=16 Identities=38% Similarity=0.254 Sum_probs=12.1
Q ss_pred ccccchhhhHHHhhhh
Q 005265 689 NSTSDCQIDFQVETAI 704 (705)
Q Consensus 689 ~~~~~~~~~~~~~~~~ 704 (705)
-=.++.|+|.-|+|-|
T Consensus 395 iggs~~q~dlf~q~~~ 410 (491)
T KOG2610|consen 395 IGGSGLQRDLFVQTLI 410 (491)
T ss_pred hcCcchhHHHHHHHHH
Confidence 3456789999998865
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.36 Score=45.71 Aligned_cols=103 Identities=13% Similarity=0.082 Sum_probs=69.4
Q ss_pred ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCCCHH-HHHH
Q 005265 491 DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAG---CLDEAKTLIEAM-PMQPDAV-IWGS 565 (705)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p~~~-~~~~ 565 (705)
|...|..|..+|...|+.+.|...|....+-.| +++..+..+..++..+. ...++..+|+++ ..+|+.. +..-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 345777777778888888888777776654322 23555666665544332 345677788877 4566444 4455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
|...+...|++.+|...++.+++..|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 555588999999999999999998777644
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.64 E-value=1.9 Score=40.31 Aligned_cols=194 Identities=22% Similarity=0.185 Sum_probs=124.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMV-----ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLC 500 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 500 (705)
...+......+...+.+..+...+.... ......+......+...+++..+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4555666666677777777776666543 22444555666666667777777777777776332221 12222222
Q ss_pred -HHhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 005265 501 -ACSHAGLVEEGRKYFSSMSKEHGLAP----LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD--AVIWGSLLAACKV 572 (705)
Q Consensus 501 -~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~ 572 (705)
.+...|+++.|...+..... ..| ....+......+...++.++|...+... ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 57777888888888877633 222 2334444444566777888888877776 33333 5666777777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 573 HRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 573 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
.++++.|...+.......|.....+..++..+...|.++++...+.+....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888775555667777777667788888877777643
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.094 Score=48.84 Aligned_cols=91 Identities=22% Similarity=0.342 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---chHHH
Q 005265 530 HYTCMVDLLGRAGCLDEAKTLIEAM----P---MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS---GPYVL 599 (705)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~~----~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~ 599 (705)
.|+.-++ +.+.|++.+|...|... + ..||..-| |..++...|+++.|..+|..+.+-.|+++ ..+.-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3444443 33456677777766665 1 22344433 77778888888888888888888755543 45777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 005265 600 LSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 600 l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
|+.+..+.|+.++|..+++++.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 888888888888888888888754
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.16 Score=42.14 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=30.1
Q ss_pred CCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 005265 488 EKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVD 536 (705)
Q Consensus 488 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 536 (705)
..|+..+..+++.+++..|++..|.++.+...+.++++.+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4556666666666666666666666666666666665555555555554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.073 Score=53.51 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDA----VIWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|.++..+|...|+.++|...+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667777777788888888888887775 566653 35777777788888888888888888776
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.46 E-value=4.8 Score=45.60 Aligned_cols=65 Identities=20% Similarity=0.317 Sum_probs=34.2
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCC-Ceeh--HHHHHHHHHHcCChHHHHH
Q 005265 295 VDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLER-NVVS--WNALIAGYTQNGENEEALG 371 (705)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~--~~~li~~~~~~g~~~~A~~ 371 (705)
.-+|.++|+.++|. .+|..+|++.+|..+..++..+ +... -..|+.-+...+++-+|-+
T Consensus 959 al~Ye~~GklekAl------------------~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~ 1020 (1265)
T KOG1920|consen 959 ALMYERCGKLEKAL------------------KAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAK 1020 (1265)
T ss_pred HHHHHHhccHHHHH------------------HHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHH
Confidence 34566666666666 3344556666666666555333 2111 1345555555666655555
Q ss_pred HHHHhh
Q 005265 372 LFRLLK 377 (705)
Q Consensus 372 ~~~~m~ 377 (705)
+..+..
T Consensus 1021 il~e~~ 1026 (1265)
T KOG1920|consen 1021 ILLEYL 1026 (1265)
T ss_pred HHHHHh
Confidence 554443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.37 E-value=2.4 Score=45.92 Aligned_cols=54 Identities=13% Similarity=0.128 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005265 431 SLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKML 484 (705)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 484 (705)
-++..+.+..+++.+..+.+...+.++..|-.++..+++.+..+.-.+...+.+
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 355666777777777777777777788888888888888776655555444443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.34 E-value=2.2 Score=39.04 Aligned_cols=26 Identities=8% Similarity=0.050 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhh
Q 005265 352 SWNALIAGYTQNGENEEALGLFRLLK 377 (705)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m~ 377 (705)
.|.....+|....++++|...+.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34445555556666666655554443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.28 E-value=1.7 Score=44.32 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhCCCCCc
Q 005265 578 LGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 578 ~a~~~~~~~~~~~p~~~~ 595 (705)
.|.+...++++.+|.-+.
T Consensus 364 ~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHHHHHHHHhCCCCch
Confidence 366788888888876554
|
The molecular function of this protein is uncertain. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.23 Score=41.14 Aligned_cols=54 Identities=11% Similarity=0.025 Sum_probs=40.4
Q ss_pred CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHh
Q 005265 247 GIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAK 300 (705)
Q Consensus 247 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 300 (705)
...|+..+..+++.+++..+++..|.++.+...+..+++.+..+|..|+.-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 356778888888888888888888888888888776677777777777764433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.39 Score=46.25 Aligned_cols=195 Identities=7% Similarity=0.003 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHc----cC---CC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCh---h
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFET----MV---ER--DWVSWNAMIVGCAQNGYGTEALGLFKKMLLC-GEKPDH---V 493 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~----~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~---~ 493 (705)
.++..+.++.+..|.+++++..--. .. +. -..+|..+..++.+..++.+++.+-+.-... |..|.. .
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 3455566667777776665543211 11 11 1235556666666666666666665544332 333321 2
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCH--
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP----LKDHYTCMVDLLGRAGCLDEAKTLIEAM-------PMQPDA-- 560 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-- 560 (705)
...++..+....+.++++++.|+...+-..-.. ...++..|...|.+..++++|.-+..+. ++..-.
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 334455666777788888888887654321111 2457888888899988888876665443 222111
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhh--C----CCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 561 ---VIWGSLLAACKVHRNIMLGEYVAKKLLEI--E----PSNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 561 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
.+...+.-+++..|....|.+..+++.++ . |-.......++++|-..|+.+.|..-++...
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 23334455578889888888888888776 2 2223345678899999998888877776543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.053 Score=32.80 Aligned_cols=32 Identities=16% Similarity=0.048 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005265 561 VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS 592 (705)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 592 (705)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45777777788888888888888888888876
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.96 E-value=2.9 Score=39.64 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=26.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHh
Q 005265 466 GCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSM 518 (705)
Q Consensus 466 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (705)
.....|++.+|..+|+..... .|. ......+..++...|+.+.|..++..+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 344555566666666555552 222 233444455555555555555555544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.082 Score=31.87 Aligned_cols=32 Identities=28% Similarity=0.220 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN 593 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 593 (705)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666677777777888888888877777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.3 Score=44.20 Aligned_cols=170 Identities=12% Similarity=0.123 Sum_probs=93.0
Q ss_pred HHHHHhhcCCChHHHHHHHhccCCC-Cc------chHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 005265 191 ALIDMYGKCGRVSCARRVFDGMRER-NI------VSWNSLITCYEQ---NGPASDALEVFVRMMASGIEPDEVTLASVVS 260 (705)
Q Consensus 191 ~li~~~~~~g~~~~A~~~~~~~~~~-~~------~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 260 (705)
.++-.|-...+++...++++.+... +. ..--...-++.+ .|+.++|++++..+....-.+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577778888888888887753 11 111233344555 7888889988888766666777777777666
Q ss_pred HHHc---------cCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHh
Q 005265 261 ACAS---------LAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAK 331 (705)
Q Consensus 261 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 331 (705)
.|-. ...++.|...|.+..+ +.|+....-.++..+...|.......-++++. +.++ ..+.+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~----~~l~---~llg~ 295 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIG----VKLS---SLLGR 295 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHH----HHHH---HHHHh
Confidence 5531 1235666666666555 33444443334444444443222211111100 0000 01111
Q ss_pred cCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhC
Q 005265 332 ASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRE 379 (705)
Q Consensus 332 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 379 (705)
.|..+ ...+-..+.+++.+..-.|++++|...+++|.+.
T Consensus 296 kg~~~---------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 296 KGSLE---------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hcccc---------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 11110 0122233456778888888999999998888875
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.5 Score=46.16 Aligned_cols=115 Identities=19% Similarity=0.107 Sum_probs=75.2
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHH-HHHHHhcCChHHHHHHHHhCC-C-----CCCHHHHHHHHHHHHhcCCHH
Q 005265 505 AGLVEEGRKYFSSMSKEHGLAPLKDHYTCM-VDLLGRAGCLDEAKTLIEAMP-M-----QPDAVIWGSLLAACKVHRNIM 577 (705)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~-~-----~p~~~~~~~l~~~~~~~g~~~ 577 (705)
....+.|.++++.+.+. -|+...|... ...+...|++++|++.|+++- . +-....+.-+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 44566777777777654 3554444332 345666777888888777652 1 112345555666677788888
Q ss_pred HHHHHHHHHHhhCCCCCchH-HHHHHHHHhcCCh-------hHHHHHHHHHHh
Q 005265 578 LGEYVAKKLLEIEPSNSGPY-VLLSNMYAELGRW-------GEVVRVRKLMRK 622 (705)
Q Consensus 578 ~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~-------~~A~~~~~~~~~ 622 (705)
+|...+.++.+.+.-....| ...+.++...|+. ++|.++++++..
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 89888888888766544444 3455556777888 888888887764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.98 Score=37.92 Aligned_cols=114 Identities=12% Similarity=-0.001 Sum_probs=56.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 005265 465 VGCAQNGYGTEALGLFKKMLLCGEKP---DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRA 541 (705)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 541 (705)
....+.|++++|.+.|+.+... .+. ....-..++.++.+.+++++|...+++.++-+.-.|+ ..|.....+++.-
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 3344556666666666666553 111 1124445555666666666666666666554333333 2233333333322
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 542 GCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 542 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
...+..+.-+- ..+ +..+....|...|+++++..|++..
T Consensus 96 ~~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 96 EQDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCChh
Confidence 22111111110 111 1122356888899999999998753
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.31 Score=45.21 Aligned_cols=98 Identities=21% Similarity=0.171 Sum_probs=77.6
Q ss_pred HHHHHccC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC------------
Q 005265 446 CRIFETMV--ERDWVSWNAMIVGCAQN-----GYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAG------------ 506 (705)
Q Consensus 446 ~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g------------ 506 (705)
...|..+. ++|..+|.+++..|..+ ++++=....++.|.+-|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 45566665 56888888888887654 566777778889999999999999999998776532
Q ss_pred ----cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh
Q 005265 507 ----LVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCL 544 (705)
Q Consensus 507 ----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 544 (705)
.-+-++.++++| +.+|+.||.++-..|++++++.+..
T Consensus 134 HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhcccccc
Confidence 234578889999 5679999999999999999988864
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.66 E-value=1.7 Score=40.42 Aligned_cols=136 Identities=13% Similarity=0.104 Sum_probs=79.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC--CCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 005265 464 IVGCAQNGYGTEALGLFKKMLLCGE--KPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRA 541 (705)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 541 (705)
+..-.+.|++++|.+.|+.+..... +-...+...++-++.+.+++++|+...++..+.++-.|+.. |...+.+++
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs-- 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS-- 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH--
Confidence 3445567777888888777776421 11223555666667777777777777777776666666532 333333333
Q ss_pred CChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch-----------------HHHHHHH
Q 005265 542 GCLDEAKTLIEAMP-MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP-----------------YVLLSNM 603 (705)
Q Consensus 542 g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------------~~~l~~~ 603 (705)
.|.... ...|. .-...|..-++.+++..|++..+ =..++..
T Consensus 118 --------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iary 176 (254)
T COG4105 118 --------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARY 176 (254)
T ss_pred --------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 01111 11234455555555556664432 2367788
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 005265 604 YAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 604 ~~~~g~~~~A~~~~~~~~~~ 623 (705)
|.+.|.|.-|..-++.|.+.
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc
Confidence 99999999999999999864
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.37 Score=41.58 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHhH----HhcCCCCChhH
Q 005265 460 WNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLVEEGRKYFSSMS----KEHGLAPLKDH 530 (705)
Q Consensus 460 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~ 530 (705)
...++..+...|++++|..+.+++.. ..| |...+..++.++...|+...|.++|+.+. ++.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 33445555666666666666666666 334 33466666666666666666666665553 23466666544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.61 E-value=1.4 Score=38.36 Aligned_cols=128 Identities=12% Similarity=0.045 Sum_probs=54.3
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCC
Q 005265 5 RSVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKN 84 (705)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 84 (705)
+.++.+...+++|+...|..+++.+.+.|.+....+ +++.++-+|.......+-.+ .+....+.++=-.|..+=
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHHh
Confidence 344455556666666666666666666665443333 33344333332222211111 112222322222222221
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHH
Q 005265 85 VFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGY 138 (705)
Q Consensus 85 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 138 (705)
...+..++..+...|++-+|+++.+....-+......++.+..+.++...-..+
T Consensus 89 ~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V 142 (167)
T PF07035_consen 89 GTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAV 142 (167)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHH
Confidence 223444445555555555555555444333333334444444444444333333
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.29 Score=45.39 Aligned_cols=108 Identities=13% Similarity=0.119 Sum_probs=72.6
Q ss_pred HHHhcCC--CCCcccHHHHHHHHHh-----CCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCC------------
Q 005265 106 RLFASMP--ERDQCSWNSMVSGFAQ-----HDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVD------------ 166 (705)
Q Consensus 106 ~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~------------ 166 (705)
+.|.... ++|-.+|-.++..+.. .+.++-....++.|.+.|+.-|..+|+.||+.+-+..-
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444444 4555666666666643 35666667778889999999999999999988755432
Q ss_pred ----cHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCCh-HHHHHHHhccC
Q 005265 167 ----FKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRV-SCARRVFDGMR 213 (705)
Q Consensus 167 ----~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 213 (705)
-.-+..++++|...|+.||-.+-..|++++.+.+-. .+..++.-.|+
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 233667788888888888888888888888777653 33344444443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.98 Score=45.93 Aligned_cols=148 Identities=14% Similarity=0.047 Sum_probs=87.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 005265 468 AQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEA 547 (705)
Q Consensus 468 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 547 (705)
-+..+...-++.-++.++ +.||-.+.-.++ +-..+..+.++.+++++..+.- ...+..- ......|..
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAg-----E~~lg~s-~~~~~~g~~--- 246 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAG-----EASLGKS-QFLQHHGHF--- 246 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHH-----HHhhchh-hhhhcccch---
Confidence 345566666677777776 667665433332 3334556788888888776541 0000000 000111111
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 548 KTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS--NSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 548 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
.+.+..-...|-..+-..+..++.+.|+.++|.+.++.+++..|. +..+...|+.++...+.+.++..++.+.-+...
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 111111112233444456777788889999999999999887665 445678899999999999999999988765444
Q ss_pred cc
Q 005265 626 VK 627 (705)
Q Consensus 626 ~~ 627 (705)
.+
T Consensus 327 pk 328 (539)
T PF04184_consen 327 PK 328 (539)
T ss_pred Cc
Confidence 33
|
The molecular function of this protein is uncertain. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.48 E-value=2.3 Score=36.19 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhh
Q 005265 119 WNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACA 162 (705)
Q Consensus 119 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 162 (705)
...++..+...+.+.....+++.+...+. .+...++.++..++
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~ 52 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence 34445555545555555555555544432 33334444444443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.48 E-value=1.6 Score=41.27 Aligned_cols=120 Identities=14% Similarity=0.144 Sum_probs=88.1
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCH
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGS---LLAACKVHRNI 576 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~ 576 (705)
.....|+..+|...|+..... .|. ...--.++.+|...|+.++|..++..++.+-....|.. -+..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 456789999999999988754 333 56677889999999999999999999975544444433 22333343333
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 577 MLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 577 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
.+... +++-...+|+|...-..++..|...|+.++|.+.+=.+.++.
T Consensus 220 ~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 220 PEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33322 233445699999999999999999999999999888887654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.22 E-value=1.3 Score=45.91 Aligned_cols=154 Identities=12% Similarity=0.038 Sum_probs=92.8
Q ss_pred HHhCCChHHHHHHHH--HhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChH
Q 005265 126 FAQHDRFSEALGYFV--KMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVS 203 (705)
Q Consensus 126 ~~~~~~~~~a~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 203 (705)
..-.++++++.+... .+.. .+ ...-.+.++..+-+.|.++.|.++-. |+ ..-.....++|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHH
Confidence 344666766655554 1211 11 23446666666777777777766633 22 22345556788999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 005265 204 CARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEK 283 (705)
Q Consensus 204 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 283 (705)
.|.++.++.. +...|..|.....++|+++-|.+.|.+..+ |..++-.|.-.|+.+.-.++.......|
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~- 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG- 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence 9888877765 556899999999999999999998888765 5566666777788777777776666655
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 005265 284 LRNDLVLGNALVDMYAKCGKLNEARCVFD 312 (705)
Q Consensus 284 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 312 (705)
-++....++.-.|+.++..+++.
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 13444555556677777775554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.2 Score=43.90 Aligned_cols=89 Identities=15% Similarity=0.173 Sum_probs=68.9
Q ss_pred HHHHhcCChHHHHHHHHhC-C-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005265 536 DLLGRAGCLDEAKTLIEAM-P-MQP-----DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELG 608 (705)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~~-~-~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 608 (705)
+-+.+.|++++|..-|..+ . .+| ..+.|..-..+..+.+.++.|+.-..++++++|....+....+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3456677777777776655 1 121 23445555566778899999999999999999998888888899999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 005265 609 RWGEVVRVRKLMRKRG 624 (705)
Q Consensus 609 ~~~~A~~~~~~~~~~~ 624 (705)
++++|++-++++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999998654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.03 E-value=3.1 Score=35.41 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCc
Q 005265 431 SLIDMYMKCGSVEDGCRIFETMVER---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGL 507 (705)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 507 (705)
.++..+...+.+.....+++.+... +....|.++..|++.+ ..+.++.++. .++......+++.|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 4455555555555555555554322 3344555555555442 2233333321 1223333444555555555
Q ss_pred HHHHHHHHHH
Q 005265 508 VEEGRKYFSS 517 (705)
Q Consensus 508 ~~~a~~~~~~ 517 (705)
++++.-++..
T Consensus 85 ~~~~~~l~~k 94 (140)
T smart00299 85 YEEAVELYKK 94 (140)
T ss_pred HHHHHHHHHh
Confidence 5555554443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.92 E-value=5.4 Score=37.12 Aligned_cols=219 Identities=18% Similarity=0.059 Sum_probs=144.9
Q ss_pred CChHHHHHHHHHhhhCCCC-cchhhHHHHHHHHhhcccHHHHHHHHHHHHHh-CCCCCCCCCCcHhHHHHHHHHHHhcCC
Q 005265 364 GENEEALGLFRLLKRESVC-PTHYTFGNLLNACANLADLQLGRQAHTHVVKH-GLRFLSGEESDIFVGNSLIDMYMKCGS 441 (705)
Q Consensus 364 g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~ 441 (705)
+....+...+......... .....+......+...+.+..+...+...... .. ......+......+...++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 110 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELL------PNLAEALLNLGLLLEALGK 110 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhc------cchHHHHHHHHHHHHHHhh
Confidence 3344444444444433221 12344555555666666666666666655542 11 3555666677777777777
Q ss_pred HHHHHHHHHccCCC---ChhHHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCC----ChhhHHHHHHHHhccCcHHHHHH
Q 005265 442 VEDGCRIFETMVER---DWVSWNAMIV-GCAQNGYGTEALGLFKKMLLCGEKP----DHVTMIGVLCACSHAGLVEEGRK 513 (705)
Q Consensus 442 ~~~A~~~~~~~~~~---~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~ 513 (705)
...+...+...... +......... .+...|+++.|...+.+... ..| ....+......+...++.+.+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 88888888776542 2222333333 68889999999999999866 344 22344444445677889999999
Q ss_pred HHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005265 514 YFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIE 590 (705)
Q Consensus 514 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 590 (705)
.+...... ... ....+..+...+...+++++|...+... ...|+ ...+..+...+...+..+.+...+.+..+..
T Consensus 189 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 189 LLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99988653 223 3677888888999999999999998887 44554 4555555556557778999999999999998
Q ss_pred CC
Q 005265 591 PS 592 (705)
Q Consensus 591 p~ 592 (705)
|.
T Consensus 267 ~~ 268 (291)
T COG0457 267 PD 268 (291)
T ss_pred cc
Confidence 87
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.73 Score=43.11 Aligned_cols=92 Identities=22% Similarity=0.190 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 005265 460 WNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH----VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCM 534 (705)
Q Consensus 460 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 534 (705)
|+.-+. +.+.|++..|...|...++.. |+. ..+--|..++...|++++|..+|..+.+.++-.|. +..+--|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 554443 334555677777776666632 222 13344556666666666666666666655444333 3444444
Q ss_pred HHHHHhcCChHHHHHHHHhC
Q 005265 535 VDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~~ 554 (705)
.....+.|+.++|...|++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 44444444444444444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.70 E-value=6 Score=36.90 Aligned_cols=174 Identities=18% Similarity=0.120 Sum_probs=108.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHH
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMVER------DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH--VTMIG 497 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ 497 (705)
...|+. +..-.+.|++++|.+.|+.+... ...+--.++-++.+.+++++|+...++.+.. -|+. ..|..
T Consensus 35 ~~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l--yP~~~n~dY~~ 111 (254)
T COG4105 35 SELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL--YPTHPNADYAY 111 (254)
T ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCCCChhHHH
Confidence 344443 34456789999999999999743 2334555677888999999999999998884 3433 34555
Q ss_pred HHHHHhc-------cCcHH---HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH--HH
Q 005265 498 VLCACSH-------AGLVE---EGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIW--GS 565 (705)
Q Consensus 498 ll~~~~~-------~g~~~---~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~ 565 (705)
.|.+++. ..+.. .|..-|+.++.++ |+ +.-..+|...+.... |.... .+
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---Pn-------------S~Ya~dA~~~i~~~~---d~LA~~Em~ 172 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PN-------------SRYAPDAKARIVKLN---DALAGHEMA 172 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CC-------------CcchhhHHHHHHHHH---HHHHHHHHH
Confidence 5555442 12222 3333344444332 33 122222222222211 11222 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCch---HHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEIEPSNSGP---YVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
+..-|.+.|.+..|..-++++++.-|+...+ +..|..+|.+.|-.++|.+.-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 4555889999999999999999987665544 5567778999999999988766554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.68 E-value=4.1 Score=42.36 Aligned_cols=98 Identities=16% Similarity=0.139 Sum_probs=53.0
Q ss_pred hcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHH
Q 005265 331 KASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTH 410 (705)
Q Consensus 331 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 410 (705)
+.|+++.|.++.+... +...|..|.....+.|+++-|.+.|.+... +..++-.|...|+.+.-.++...
T Consensus 330 ~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 330 QLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 3444444444443332 445677777777777777777777765543 34455555666666666666666
Q ss_pred HHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHc
Q 005265 411 VVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFET 451 (705)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (705)
....|- ++....++.-.|+.++..+++.+
T Consensus 399 a~~~~~------------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERGD------------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHccC------------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 555552 33344444455666666655544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.59 E-value=5.9 Score=36.44 Aligned_cols=85 Identities=15% Similarity=0.076 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCchHHH
Q 005265 532 TCMVDLLGRAGCLDEAKTLIEAMP-------MQPDA-VIWGSLLAACKVHRNIMLGEYVAKKLLEI----EPSNSGPYVL 599 (705)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~ 599 (705)
..+...|.+..++++|-..|.+-. .-|+. ..+.+.+-.+....|+..|++.++.-.++ .|++..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 333445555566655555444331 11222 12333333344455666666666665443 3444444555
Q ss_pred HHHHHHhcCChhHHHHHH
Q 005265 600 LSNMYAELGRWGEVVRVR 617 (705)
Q Consensus 600 l~~~~~~~g~~~~A~~~~ 617 (705)
|...|- .|+.+++.++.
T Consensus 234 LL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 234 LLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHhc-cCCHHHHHHHH
Confidence 555443 45555555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.51 E-value=12 Score=39.61 Aligned_cols=110 Identities=20% Similarity=0.107 Sum_probs=61.2
Q ss_pred ChHHHHHHHhhCCC--CCcccHHHH-HHHHHhcCCHHHHHHHHHhcCC-------CCeehHHHHHHHHHHcCChHHHHHH
Q 005265 303 KLNEARCVFDRMPI--RNVVSETSM-VSGYAKASSVKSARLMFTKMLE-------RNVVSWNALIAGYTQNGENEEALGL 372 (705)
Q Consensus 303 ~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~ 372 (705)
+.+.|.+++..+.. |+...|.-. .+.+...|++++|.+.|++... -....+--+...+.-..+|++|...
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 34445555554443 333333222 2233445555555566654432 1223344466677888999999999
Q ss_pred HHHhhhCCCCcchhhHHHHHHHH-hhcccH-------HHHHHHHHHHHH
Q 005265 373 FRLLKRESVCPTHYTFGNLLNAC-ANLADL-------QLGRQAHTHVVK 413 (705)
Q Consensus 373 ~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~-------~~a~~~~~~~~~ 413 (705)
|..+.+.. .-+..+|.-+..+| ...++. ++|..++.++..
T Consensus 328 f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 328 FLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99988754 34455555555544 344555 677777776643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.27 Score=39.78 Aligned_cols=55 Identities=11% Similarity=-0.037 Sum_probs=51.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 569 ACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 569 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+....|+.+.|++.|.+++.+-|..+++|++-+..+--+|+.++|+.-+++..+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3678899999999999999999999999999999999999999999999998763
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.43 Score=45.59 Aligned_cols=87 Identities=13% Similarity=0.059 Sum_probs=56.0
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHH
Q 005265 536 DLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEV 613 (705)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 613 (705)
+-|.++|.+++|+..|... ...| |++++..-..+|.+...+..|+.-...++.++..-..+|..-+.+-...|+..+|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3466677777777766654 4455 6666666666677777777777766666666655555666666666666666666
Q ss_pred HHHHHHHHh
Q 005265 614 VRVRKLMRK 622 (705)
Q Consensus 614 ~~~~~~~~~ 622 (705)
.+-.+...+
T Consensus 185 KkD~E~vL~ 193 (536)
T KOG4648|consen 185 KKDCETVLA 193 (536)
T ss_pred HHhHHHHHh
Confidence 666666553
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.18 Score=30.99 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 596 PYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
+|..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999999854
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.96 E-value=1 Score=43.02 Aligned_cols=159 Identities=13% Similarity=-0.006 Sum_probs=120.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH----HHHHHhcCCh
Q 005265 469 QNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCM----VDLLGRAGCL 544 (705)
Q Consensus 469 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~g~~ 544 (705)
-+|+..+|-..++++++. .+-|...+...-++|...|+.+.-...++++... ..|+...|..+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888999999999885 5556778888889999999999999999988653 35665555444 3455689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CCchHHHHHHHHHhcCChhHHHHHHH
Q 005265 545 DEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS----NSGPYVLLSNMYAELGRWGEVVRVRK 618 (705)
Q Consensus 545 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 618 (705)
++|++.-++. ++.| |...-+++...+...|+..++.+...+-...-.. -...|...+-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 5554 6667778888889999999999887765543111 22346677788888899999999998
Q ss_pred HHHhCCCccCCc
Q 005265 619 LMRKRGVVKQPG 630 (705)
Q Consensus 619 ~~~~~~~~~~~~ 630 (705)
.-.-..+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 766555555554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.93 E-value=9.6 Score=37.04 Aligned_cols=88 Identities=15% Similarity=0.031 Sum_probs=42.7
Q ss_pred HHHHcC-ChHHHHHHHHHhhhC--------CCCcch-----hhHHHHHHHHhhcccHH---HHHHHHHHHHHhCCCCCCC
Q 005265 359 GYTQNG-ENEEALGLFRLLKRE--------SVCPTH-----YTFGNLLNACANLADLQ---LGRQAHTHVVKHGLRFLSG 421 (705)
Q Consensus 359 ~~~~~g-~~~~A~~~~~~m~~~--------g~~p~~-----~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~ 421 (705)
.....+ +++.|..++++..+. ...|+. .++..++.++...+..+ .|..+.+.+.....
T Consensus 44 ~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~----- 118 (278)
T PF08631_consen 44 SLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG----- 118 (278)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-----
Confidence 334444 777777777665432 122222 23445555555555433 34444444433221
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC
Q 005265 422 EESDIFVGNSLIDMYMKCGSVEDGCRIFETMV 453 (705)
Q Consensus 422 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 453 (705)
..+.++-.-+..+.+.++.+.+.+++.+|.
T Consensus 119 --~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 119 --NKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred --CCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 223333334445555666666666666654
|
It is also involved in sporulation []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.68 E-value=18 Score=39.62 Aligned_cols=174 Identities=14% Similarity=0.096 Sum_probs=98.0
Q ss_pred HHHHHHhhcCCChHHHHHHHhccCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC
Q 005265 190 SALIDMYGKCGRVSCARRVFDGMRERNIV---SWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLA 266 (705)
Q Consensus 190 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 266 (705)
..-++..++..-++-|..+-+.-..+... .......-+.+.|++++|...|-+-... +.|. .++.-+....
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence 34455555666666666665543322111 1223334456678888888877665432 2332 2344444445
Q ss_pred ChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcc--cHHHHHHHHHhcCCHHHHHHHHHh
Q 005265 267 AFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVV--SETSMVSGYAKASSVKSARLMFTK 344 (705)
Q Consensus 267 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~ 344 (705)
+...-..+++.+.+.| + .+...-+.|+++|.+.++.+.-.+..+... .+.. -....+..+.+.+-.++|..+-.+
T Consensus 412 ~IknLt~YLe~L~~~g-l-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKG-L-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHcc-c-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 5555666677777776 3 344445678888888888888887777666 2222 234555666666666666555544
Q ss_pred cCCCCeehHHHHHHHHHHcCChHHHHHHHHHh
Q 005265 345 MLERNVVSWNALIAGYTQNGENEEALGLFRLL 376 (705)
Q Consensus 345 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 376 (705)
... +... +--.+-..+++++|++.+..|
T Consensus 489 ~~~-he~v---l~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKK-HEWV---LDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred hcc-CHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence 332 2222 222233456777777777655
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.78 Score=31.02 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHHHHcCc
Q 005265 597 YVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGY 672 (705)
Q Consensus 597 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~ 672 (705)
...++-++.+.|++++|++..+.+.+ .+|.+.+.......+..+|.+.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 56788889999999999999999884 467788888888888889988873
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.45 E-value=8 Score=37.77 Aligned_cols=202 Identities=14% Similarity=0.037 Sum_probs=111.0
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHH-Hh---hhCC-CCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCc
Q 005265 351 VSWNALIAGYTQNGENEEALGLFR-LL---KRES-VCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESD 425 (705)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~-~m---~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 425 (705)
.++..+..+.++.|.+++++..-- .| .+.. -.---..|..+..++.+..++.+++.+-..-....- ....+..
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpg--t~~~~~~ 121 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPG--TRAGQLG 121 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCC--CCccccc
Confidence 345556667777777776654311 11 1100 000112344444444444455555544443332211 0000111
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCC-------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCh--
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMVE-------R--DWVSWNAMIVGCAQNGYGTEALGLFKKMLLC--GEKPDH-- 492 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~-- 492 (705)
-...-++..++...+.++++++.|+...+ + ....+-.|...|.+..++++|.-+..+..+. .+..+.
T Consensus 122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~ 201 (518)
T KOG1941|consen 122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS 201 (518)
T ss_pred chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh
Confidence 23344566777777788888888876542 1 2346777888888888888888776665441 122111
Q ss_pred hhH-----HHHHHHHhccCcHHHHHHHHHHhHHh---cCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005265 493 VTM-----IGVLCACSHAGLVEEGRKYFSSMSKE---HGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 493 ~~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 554 (705)
.-| ..+.-++-..|..-.|.+..++..+- +|-.|. .....++.+.|...|+.+.|..-|+..
T Consensus 202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122 22334566677777777777665432 233333 455667889999999999888877764
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.44 E-value=4.6 Score=34.72 Aligned_cols=90 Identities=18% Similarity=0.089 Sum_probs=58.5
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHH
Q 005265 500 CACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMP-MQPDAVIWGSLLAACKVHRNIM 577 (705)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~ 577 (705)
..-...++.+++..+++.+. -+.|. ...-..-...+.+.|++.+|+.+|+++. -.|....-.+|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33456778888888888774 35666 3333344556788899999999999883 3355555566676666655544
Q ss_pred HHHHHHHHHHhhCCC
Q 005265 578 LGEYVAKKLLEIEPS 592 (705)
Q Consensus 578 ~a~~~~~~~~~~~p~ 592 (705)
.-....+++++..|+
T Consensus 95 ~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 95 SWRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHhcCCC
Confidence 555556666666553
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.28 Score=29.46 Aligned_cols=31 Identities=16% Similarity=0.065 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPS 592 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 592 (705)
+|..+...+...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666677777777777777777777764
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.30 E-value=1.6 Score=37.66 Aligned_cols=87 Identities=14% Similarity=0.001 Sum_probs=47.7
Q ss_pred HHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHh
Q 005265 359 GYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMK 438 (705)
Q Consensus 359 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 438 (705)
-+...|++++|..+|+-+.-.+. -+..-+..|..+|-..++++.|...+......+. .|+...--...+|..
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-------~dp~p~f~agqC~l~ 117 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-------NDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-------CCCCccchHHHHHHH
Confidence 34566777777777766554331 1222233444444455666677666666555443 233334445566666
Q ss_pred cCCHHHHHHHHHccC
Q 005265 439 CGSVEDGCRIFETMV 453 (705)
Q Consensus 439 ~g~~~~A~~~~~~~~ 453 (705)
.|+.+.|...|....
T Consensus 118 l~~~~~A~~~f~~a~ 132 (165)
T PRK15331 118 MRKAAKARQCFELVN 132 (165)
T ss_pred hCCHHHHHHHHHHHH
Confidence 666666666665544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.34 Score=29.73 Aligned_cols=28 Identities=7% Similarity=-0.040 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
+|..|...|.+.|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.48 E-value=17 Score=36.72 Aligned_cols=150 Identities=11% Similarity=-0.022 Sum_probs=82.3
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hh
Q 005265 455 RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP---DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL--KD 529 (705)
Q Consensus 455 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 529 (705)
....+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+..+|...++..... .+... ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345678888888888999999998888887743222 2233444455566778888888888777652 11111 11
Q ss_pred HHHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005265 530 HYTCMVDLLGRAGCLDEAKTL-IEAMPMQPDAVIWGSLLAACKVH------RNIMLGEYVAKKLLEIEPSNSGPYVLLSN 602 (705)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 602 (705)
....+...+.. ..+..... ........-..++..+...+... ++.+.+...|.++.+..|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000011222233333333 78899999999999999988888888777
Q ss_pred HHHhc
Q 005265 603 MYAEL 607 (705)
Q Consensus 603 ~~~~~ 607 (705)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 76554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.37 E-value=26 Score=38.61 Aligned_cols=127 Identities=10% Similarity=0.015 Sum_probs=76.3
Q ss_pred cCChHHHHHHHHHHHHC-CCCCChh--hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005265 470 NGYGTEALGLFKKMLLC-GEKPDHV--TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDE 546 (705)
Q Consensus 470 ~g~~~~A~~~~~~m~~~-g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 546 (705)
..+.+.|..++...... +..+... ....+.......+..+++...++..... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 45678899999887554 3333332 3334433333333356677777654322 2244445555556668999999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 005265 547 AKTLIEAMP--MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNM 603 (705)
Q Consensus 547 A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 603 (705)
+...+..|+ ..-...-..-+..+....|+.++|...|+++.. +. +.|-.|+.-
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~--~fYG~LAa~ 385 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QR--GFYPMVAAQ 385 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--CcHHHHHHH
Confidence 999999984 122233334466666778999999999999743 32 345555443
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=91.19 E-value=2.6 Score=34.72 Aligned_cols=74 Identities=14% Similarity=0.246 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHh-hCCCCC-chHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEeEEeeCCcCCC
Q 005265 574 RNIMLGEYVAKKLLE-IEPSNS-GPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHP 651 (705)
Q Consensus 574 g~~~~a~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (705)
.+..++..+++.+.+ -.|... .....|+-.+.+.|+|++++++.+...+ ..|
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--------------------------~e~ 102 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--------------------------TEP 102 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--------------------------hCC
Confidence 345666777777765 334322 2334566667777777777777776663 234
Q ss_pred ChhHHHHHHHHHHHHHHHcCcc
Q 005265 652 LNKEIYLVLKMLTREMKRVGYV 673 (705)
Q Consensus 652 ~~~~~~~~l~~l~~~~~~~g~~ 673 (705)
++.++..+-+.+..+|.+.|++
T Consensus 103 ~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 103 NNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred CcHHHHHHHHHHHHHHhhccee
Confidence 4444555555566677766654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.97 E-value=10 Score=33.14 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=24.5
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHH
Q 005265 237 LEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGL 272 (705)
Q Consensus 237 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 272 (705)
++.++.+.+.|+.|+...+..++..+.+.|.+..-.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ 49 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH 49 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 345556666777777777777777777777765433
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.18 Score=43.30 Aligned_cols=86 Identities=10% Similarity=0.186 Sum_probs=63.7
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCChhhHHHHHHHHHhcCChhH
Q 005265 24 KLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLLKWGFIDD 103 (705)
Q Consensus 24 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 103 (705)
.+++.+.+.+.+......++.+...+...+....+.++..|++.++.+...+.++.... .-...++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46777778889999999999999888778899999999999999988999888885433 333456666666666666
Q ss_pred HHHHHhcCC
Q 005265 104 ASRLFASMP 112 (705)
Q Consensus 104 A~~~~~~~~ 112 (705)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 666655544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.70 E-value=13 Score=34.02 Aligned_cols=133 Identities=14% Similarity=0.159 Sum_probs=70.1
Q ss_pred hcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHH
Q 005265 438 KCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSS 517 (705)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 517 (705)
+.+++++|...++. -|..|...|++..|-.....+-+- ...+. .+++.|+..++.
T Consensus 85 kk~~~~eAv~cL~~-----------aieIyt~~Grf~~aAk~~~~iaEi-yEsdl-------------~d~ekaI~~YE~ 139 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEK-----------AIEIYTDMGRFTMAAKHHIEIAEI-YESDL-------------QDFEKAIAHYEQ 139 (288)
T ss_pred hccChHHHHHHHHH-----------HHHHHHhhhHHHHHHhhhhhHHHH-HhhhH-------------HHHHHHHHHHHH
Confidence 34466666665543 356677777777666554444331 11121 233444444443
Q ss_pred hHHhcC-CCCChhHHHHH---HHHHHhcCChHHHHHHHHhC---CCCCCHHHHHH---HHHH--HHh-cCCHHHHHHHHH
Q 005265 518 MSKEHG-LAPLKDHYTCM---VDLLGRAGCLDEAKTLIEAM---PMQPDAVIWGS---LLAA--CKV-HRNIMLGEYVAK 584 (705)
Q Consensus 518 ~~~~~~-~~p~~~~~~~l---~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~---l~~~--~~~-~g~~~~a~~~~~ 584 (705)
.-.=+. -+.+...--++ .+.-...+++.+|+++|++. .+..+..-|.. ++.+ |.- ..|.-.+...++
T Consensus 140 Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALe 219 (288)
T KOG1586|consen 140 AAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALE 219 (288)
T ss_pred HHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHH
Confidence 321111 11122222233 33345678899999999887 23333333322 2332 333 367777888889
Q ss_pred HHHhhCCCCCc
Q 005265 585 KLLEIEPSNSG 595 (705)
Q Consensus 585 ~~~~~~p~~~~ 595 (705)
+-.+++|.-..
T Consensus 220 ky~~~dP~F~d 230 (288)
T KOG1586|consen 220 KYQELDPAFTD 230 (288)
T ss_pred HHHhcCCcccc
Confidence 98899997544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.63 E-value=13 Score=34.00 Aligned_cols=91 Identities=7% Similarity=-0.071 Sum_probs=49.2
Q ss_pred HHHHHHHhc-CChHHHHHHHHhCC-----CCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhhCCCCCch-------
Q 005265 533 CMVDLLGRA-GCLDEAKTLIEAMP-----MQPDAVIWGSLLAA---CKVHRNIMLGEYVAKKLLEIEPSNSGP------- 596 (705)
Q Consensus 533 ~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~p~~~~~------- 596 (705)
.+...|... .++++|+..|+... -+.+...--.++.. -...+++.+|..+|+++....-++...
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 445555544 56667777776651 12222222233333 456788999999999987765444321
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 597 YVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 597 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+..-+-++.-.++.-.+...+++..+.
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 222223333335655666666666543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.57 E-value=8.6 Score=31.65 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=11.9
Q ss_pred hcccHHHHHHHHHHHHHh
Q 005265 397 NLADLQLGRQAHTHVVKH 414 (705)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~ 414 (705)
-.|..+++.++..+....
T Consensus 14 ldG~V~qGveii~k~v~S 31 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS 31 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHcCc
Confidence 356777778887777664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.39 E-value=18 Score=35.09 Aligned_cols=26 Identities=15% Similarity=-0.120 Sum_probs=12.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 005265 565 SLLAACKVHRNIMLGEYVAKKLLEIEP 591 (705)
Q Consensus 565 ~l~~~~~~~g~~~~a~~~~~~~~~~~p 591 (705)
..+.++...|+. +|...+.++.+.+|
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 344444555543 45555555555444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.38 E-value=2.2 Score=35.92 Aligned_cols=53 Identities=9% Similarity=0.087 Sum_probs=38.7
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 572 VHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 572 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
..++.+.++.++..+.-+.|+.+..-..-++++...|+|++|.++++.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 46677777777777777777777777777777777777777777777776554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.94 Score=29.28 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 005265 459 SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV 493 (705)
Q Consensus 459 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 493 (705)
+|..+...|...|++++|.++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 455566666666666666666666666 445543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.17 E-value=1.6 Score=41.52 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
++..++..+...|+++.+...++++++.+|-+...|..+..+|.+.|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4445555566666777777777777777777777777777777777777777777776654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.15 E-value=6.6 Score=34.98 Aligned_cols=58 Identities=16% Similarity=0.084 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVERD------WVSWNAMIVGCAQNGYGTEALGLFKKML 484 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 484 (705)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344455555555555555555555544321 1233444444444555555554444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.70 E-value=15 Score=34.81 Aligned_cols=59 Identities=14% Similarity=0.055 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+-....|...|.+.+|.++.++++.++|-+...+-.|...++..|+--.|.+.++++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34455688999999999999999999999999999999999999998889888888754
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.53 E-value=28 Score=35.96 Aligned_cols=157 Identities=17% Similarity=0.142 Sum_probs=95.5
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHH
Q 005265 351 VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGN 430 (705)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (705)
...-+++..+.++-.+.-...+-.+|...| -+...|..++++|... ..+.-..+|..+++..+ .|+....
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-------nDvv~~R 136 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-------NDVVIGR 136 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-------hhHHHHH
Confidence 344556777777777777777777887754 4566777777777776 55666777888877775 5666667
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCC------Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhhHHHHHH
Q 005265 431 SLIDMYMKCGSVEDGCRIFETMVER------DW---VSWNAMIVGCAQNGYGTEALGLFKKMLLC-GEKPDHVTMIGVLC 500 (705)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~ 500 (705)
.|+..|.+ ++.+.+...|.++..+ +. ..|..++..- ..+.+..+.+..++... |..--.+.+.-+-.
T Consensus 137 eLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 137 ELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 77777776 7777777777765321 11 1454444311 23444555555555442 33333344444555
Q ss_pred HHhccCcHHHHHHHHHHhHH
Q 005265 501 ACSHAGLVEEGRKYFSSMSK 520 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~ 520 (705)
-|....++++|++++..+.+
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 214 KYSENENWTEAIRILKHILE 233 (711)
T ss_pred HhccccCHHHHHHHHHHHhh
Confidence 56666666666666665543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.25 E-value=2.1 Score=32.84 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=35.2
Q ss_pred hhHHHHHHHhccCCCCchhHHHHHHHHhcCCChhhHHHHHHHHH-HcCCCCchhhHHHHHH
Q 005265 3 TQRSVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARII-KSQFASEIFIQNRLID 62 (705)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~ 62 (705)
+++-+.++....+-|++......|++|.|.+++..|.++++-+. +.|. +..+|..+++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44555555566666777777777777777777777777777554 3332 3345555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.18 E-value=38 Score=37.02 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=43.6
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc
Q 005265 187 YMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACAS 264 (705)
Q Consensus 187 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 264 (705)
.++...|+.+.-.|+++.|-+..-.|-..+..-|.-.+..+...++......+ +.....+.+...|-.++..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 34556666667777777777777777777777777666666666655443322 2221122344456555555544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.15 E-value=38 Score=37.00 Aligned_cols=166 Identities=15% Similarity=0.120 Sum_probs=89.1
Q ss_pred HHHHHccCChhhHHHHHhccCC--C---ChhhHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHH
Q 005265 61 IDVYAKCGCLYGARKVFDKMSN--K---NVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEA 135 (705)
Q Consensus 61 l~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 135 (705)
++.+.+.+.+++|.++-..... + -...+..+|..+.-.|++++|-...-.|...+..-|..-+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 4555666777777777665543 1 2245667777777778888887777777777777777777766666655433
Q ss_pred HHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCC
Q 005265 136 LGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRER 215 (705)
Q Consensus 136 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 215 (705)
. .-+.....+.+...|..+|-.+.. .....+++.+.+. +++..+-...+++- .. -+++-. .
T Consensus 443 a---~~lPt~~~rL~p~vYemvLve~L~----~~~~~F~e~i~~W--p~~Lys~l~iisa~--~~-------q~~q~S-e 503 (846)
T KOG2066|consen 443 A---PYLPTGPPRLKPLVYEMVLVEFLA----SDVKGFLELIKEW--PGHLYSVLTIISAT--EP-------QIKQNS-E 503 (846)
T ss_pred h---ccCCCCCcccCchHHHHHHHHHHH----HHHHHHHHHHHhC--ChhhhhhhHHHhhc--ch-------HHHhhc-c
Confidence 2 223333333556666666666654 1222223322222 22222222222111 00 011111 1
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005265 216 NIVSWNSLITCYEQNGPASDALEVFVRMMA 245 (705)
Q Consensus 216 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 245 (705)
+...-..|+..|...+++..|+.++-..++
T Consensus 504 ~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 504 STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 111223377778888888888887766654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.79 E-value=1.1 Score=26.89 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 005265 458 VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD 491 (705)
Q Consensus 458 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 491 (705)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566677777777777777777777776 4454
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.75 E-value=3.3 Score=35.62 Aligned_cols=70 Identities=21% Similarity=0.182 Sum_probs=34.5
Q ss_pred hcCChHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005265 540 RAGCLDEAKTLIEAM-PMQPDAVIWGSLLAA-CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGR 609 (705)
Q Consensus 540 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 609 (705)
+.++.+++..++..+ .+.|.......+-.- +..+|++.+|.++++.+.+-.|..+..-..++.++...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 445555555555555 234443333222211 4455566666666666555555554444445555544444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.61 E-value=0.75 Score=27.46 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=24.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 595 GPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 595 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
..+..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999998753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.61 E-value=18 Score=32.69 Aligned_cols=158 Identities=18% Similarity=0.135 Sum_probs=93.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 005265 456 DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCM 534 (705)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 534 (705)
-+..||-+.--+...|+++.|.+.|+...+ +.|.. .+...-.-++...|++.-|.+=|...-+. .|+.. |.+|
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~DP-fR~L 171 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPNDP-FRSL 171 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhc---CCCCh-HHHH
Confidence 456788888888999999999999999988 55543 23222223455678998888766544332 33321 2222
Q ss_pred H-HHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCC-------CchHHHHHHHH
Q 005265 535 V-DLLGRAGCLDEAKTL-IEAMPMQPDAVIWGSLLAACK-VHRNIMLGEYVAKKLLEIEPSN-------SGPYVLLSNMY 604 (705)
Q Consensus 535 ~-~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~ 604 (705)
. -.-.+.-+..+|..- .++.. ..|..-|...+-.+. -+=.. +.+++++.....++ ..+|..|+.-|
T Consensus 172 WLYl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~---e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 172 WLYLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE---ETLMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH---HHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 2 122233456666553 44442 345555555444422 11111 22333333322222 13588899999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 005265 605 AELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 605 ~~~g~~~~A~~~~~~~~~~ 623 (705)
...|..++|..+|+-....
T Consensus 248 l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 248 LSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 9999999999999887743
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.20 E-value=3.6 Score=39.31 Aligned_cols=77 Identities=16% Similarity=0.172 Sum_probs=57.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCChhhHH
Q 005265 425 DIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLL-----CGEKPDHVTMI 496 (705)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 496 (705)
-..++..++..+..+|+.+.+.+.+++... -+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 345677788888888888888888888763 3677888888999999988888888888765 36666665544
Q ss_pred HHHHH
Q 005265 497 GVLCA 501 (705)
Q Consensus 497 ~ll~~ 501 (705)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.84 E-value=30 Score=34.96 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 558 PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEP----SNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 558 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
....+|..+...++++|.++.|...+.++.+.++ ..+......+..+...|+..+|...++......+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3456888899999999999999999999988642 2455677789999999999999999988887333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.72 E-value=18 Score=35.89 Aligned_cols=106 Identities=16% Similarity=0.245 Sum_probs=76.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCC------CHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-------ch
Q 005265 532 TCMVDLLGRAGCLDEAKTLIEAMPMQP------DAVI--WGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS-------GP 596 (705)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~~~~~p------~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~ 596 (705)
..|...+..+|+.++|..++.+.+++. .... ..--+..|...+|+-.|.-+-+++....-+.+ ..
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 446677889999999999999886331 1111 11124558888999999988888876522222 35
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEEC
Q 005265 597 YVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEIL 637 (705)
Q Consensus 597 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 637 (705)
|..++.+..+.+.|=++.+.++...+-|..+....-|+.+.
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL 255 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVL 255 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhh
Confidence 88899999999999999999999988776665444466543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.66 E-value=1.2 Score=26.30 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=15.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEIEPS 592 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~~p~ 592 (705)
+..++...|++++|.+.++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344455555666666666666555554
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.48 E-value=50 Score=36.38 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=39.1
Q ss_pred HHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHH
Q 005265 358 AGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYM 437 (705)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 437 (705)
..+.-.|+++.|++.+-. ..+...+.+++...+.-+.-..-.+... ..+..... + .+...-+..||..|.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~----~-~~~~ln~arLI~~Y~ 335 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDP----G-DPPPLNFARLIGQYT 335 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT--------------------------------HHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecC----C-CCCCcCHHHHHHHHH
Confidence 445667888998888766 2334566666666665443322221111 11111110 0 122245667777776
Q ss_pred h---cCCHHHHHHHHHccC
Q 005265 438 K---CGSVEDGCRIFETMV 453 (705)
Q Consensus 438 ~---~g~~~~A~~~~~~~~ 453 (705)
+ ..++.+|.++|--+.
T Consensus 336 ~~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 336 RSFEITDPREALQYLYLIC 354 (613)
T ss_dssp HTTTTT-HHHHHHHHHGGG
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 5 457788888876654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.08 E-value=1.6 Score=27.56 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLE 588 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 588 (705)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344444445555555555555554443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.06 E-value=12 Score=32.57 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHH-----HHHhCCChHHHHHHHHHhHhCCCCC
Q 005265 86 FTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVS-----GFAQHDRFSEALGYFVKMHSENFAL 149 (705)
Q Consensus 86 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-----~~~~~~~~~~a~~~~~~m~~~g~~p 149 (705)
..|..-++ +++.++.++|+.-|..+.+.+--.|-.|.. .....|+...|...|++.-.....|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P 127 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP 127 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc
Confidence 34444443 355666777777776666655554544332 3445666777777777665543333
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.97 E-value=7.4 Score=35.09 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=68.6
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHH
Q 005265 502 CSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDA-VIWGSLLAACKVHRNIML 578 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~ 578 (705)
|-..|.+.-|+-=|.+.. .+.|+ +.+||.|.--+...|+++.|.+.|+.. ...|.. .+...-.-++.--|++..
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 334455566665565443 56777 778888888888888888888888877 555532 222221222334578888
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcC--ChhHHHHHH
Q 005265 579 GEYVAKKLLEIEPSNSGPYVLLSNMYAELG--RWGEVVRVR 617 (705)
Q Consensus 579 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~ 617 (705)
|.+-+.+..+-+|+||. .-.|+|...- +..+|..-+
T Consensus 152 Aq~d~~~fYQ~D~~DPf---R~LWLYl~E~k~dP~~A~tnL 189 (297)
T COG4785 152 AQDDLLAFYQDDPNDPF---RSLWLYLNEQKLDPKQAKTNL 189 (297)
T ss_pred hHHHHHHHHhcCCCChH---HHHHHHHHHhhCCHHHHHHHH
Confidence 88888888888888863 3345554433 344554433
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.77 E-value=32 Score=33.41 Aligned_cols=120 Identities=8% Similarity=-0.014 Sum_probs=55.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcC-CHHHHHH-HHHhcCCCCeehHHHHHHHHHHcC
Q 005265 287 DLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKAS-SVKSARL-MFTKMLERNVVSWNALIAGYTQNG 364 (705)
Q Consensus 287 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g 364 (705)
+..+....+.++.+.|+.+....+..-+..++...-...+.++.+.+ ....+.. +...+..++...-...+.++.+.|
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 44444455555555554332222233333333333333333343332 1122222 233334455555666666676666
Q ss_pred ChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHH
Q 005265 365 ENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVK 413 (705)
Q Consensus 365 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 413 (705)
. ..|+..+-...+.+. ....++.++...|+. .+...+..+.+
T Consensus 221 ~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 221 D-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred C-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 6 345555555554332 233555666666664 45555555554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.34 E-value=71 Score=36.96 Aligned_cols=111 Identities=16% Similarity=0.097 Sum_probs=51.7
Q ss_pred HHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHH
Q 005265 433 IDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGR 512 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 512 (705)
++.--+.|-+.+|+.++..-.++-...|.+...-+.....+++|.-.|+..-+ ..-.+.+|..+|+|++|.
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREAL 985 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHH
Confidence 33334444455555544333222233333333444444555555555543222 122345555666666666
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005265 513 KYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 513 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 554 (705)
.+..++.. +-.--..+-..|+.-+...++.-+|-++..+.
T Consensus 986 ~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 986 SLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 66654421 10001222245555666666666666666555
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.30 E-value=3.9 Score=39.10 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
..+.+-.+|.+.++++.|.++.+.++.+.|+++.-+...+-+|.+.|.+..|..-++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 44566777999999999999999999999999988889999999999999999999888754
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.29 E-value=1.4 Score=27.77 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=24.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 595 GPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 595 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3578999999999999999999999875
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.15 E-value=3.6 Score=32.00 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=33.5
Q ss_pred hhHHHHHHHhccCCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005265 3 TQRSVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDV 63 (705)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 63 (705)
+++-+..+....+-|++......|++|.|.+++..|.++++-+...- .+...+|..+++-
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 34445555566666777777777777777777777777777664331 2333356655543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=85.95 E-value=35 Score=33.13 Aligned_cols=17 Identities=0% Similarity=0.061 Sum_probs=8.7
Q ss_pred cCCChhhHHHHHHHHHH
Q 005265 31 RSKSVSDTRRVHARIIK 47 (705)
Q Consensus 31 ~~~~~~~a~~~~~~~~~ 47 (705)
++|+++.|..++.++..
T Consensus 5 ~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhCCHHHHHHHHHHhhh
Confidence 44555555555555443
|
It is also involved in sporulation []. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.83 E-value=1.2 Score=24.89 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 005265 596 PYVLLSNMYAELGRWGEVVRVRK 618 (705)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~ 618 (705)
....++..+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 46678888888888888888765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=85.79 E-value=62 Score=35.80 Aligned_cols=260 Identities=12% Similarity=0.016 Sum_probs=112.8
Q ss_pred HHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHH
Q 005265 91 IITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMG 170 (705)
Q Consensus 91 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 170 (705)
.+..+.+.+++....+.+.. +..+...--....+....|+.++|....+.+-..|.. .+..+..++..+..
T Consensus 105 ~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~------- 175 (644)
T PRK11619 105 FVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQ------- 175 (644)
T ss_pred HHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHH-------
Confidence 34445566667666663322 2234433444555666677766666666666554432 23344444444433
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 005265 171 TQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEP 250 (705)
Q Consensus 171 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 250 (705)
.|.-.+...+.- +......|+...|..+...+..........++..+. +...+..++.. +.|
T Consensus 176 ---------~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~-----~~~ 237 (644)
T PRK11619 176 ---------SGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFART-----TGP 237 (644)
T ss_pred ---------cCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhc-----cCC
Confidence 332222222222 223334455555555555442211111222222221 12222221111 112
Q ss_pred CHhHHHHHHHHHH--ccCChHHHHHHHHHHHHcCCCCCCh--hHHHHHHHHHHhcCChHHHHHHHhhCCCC--CcccHHH
Q 005265 251 DEVTLASVVSACA--SLAAFKEGLQIHARLMRCEKLRNDL--VLGNALVDMYAKCGKLNEARCVFDRMPIR--NVVSETS 324 (705)
Q Consensus 251 ~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 324 (705)
+...-..++.++. ...+.+.|...+........+.+.. .+...+.......+..+++...+...... +......
T Consensus 238 ~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~ 317 (644)
T PRK11619 238 TDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLER 317 (644)
T ss_pred ChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHH
Confidence 2211111111111 2234566666666554443232222 22333333333332245555565554322 3333333
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC--CeehHH-HHHHHHHHcCChHHHHHHHHHhh
Q 005265 325 MVSGYAKASSVKSARLMFTKMLER--NVVSWN-ALIAGYTQNGENEEALGLFRLLK 377 (705)
Q Consensus 325 li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~-~li~~~~~~g~~~~A~~~~~~m~ 377 (705)
-+..-.+.++++.+...+..|+.. +...|. =+..++...|+.++|...|+...
T Consensus 318 r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 318 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344444666777766777666432 111121 24455555677777777777753
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.76 E-value=4.9 Score=36.00 Aligned_cols=75 Identities=20% Similarity=0.219 Sum_probs=51.9
Q ss_pred HhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CC---CCchHHHHHHHHHhcCChhH
Q 005265 539 GRAGCLDEAKTLIEAMPMQP--DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIE-PS---NSGPYVLLSNMYAELGRWGE 612 (705)
Q Consensus 539 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~---~~~~~~~l~~~~~~~g~~~~ 612 (705)
.+.|+ ++|.+.|-.+.-.| +....-..+..|....|.+++..++.+++++. |+ ++..+..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444 55666666663233 23333334444555788999999999999983 22 57789999999999999998
Q ss_pred HH
Q 005265 613 VV 614 (705)
Q Consensus 613 A~ 614 (705)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 75
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.62 E-value=1.9 Score=25.71 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 596 PYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+|..++.+|...|++++|.+.+++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 588999999999999999999998875
|
... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.39 E-value=10 Score=33.33 Aligned_cols=47 Identities=19% Similarity=0.108 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC----hhHHHHHHHHHH
Q 005265 575 NIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGR----WGEVVRVRKLMR 621 (705)
Q Consensus 575 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~ 621 (705)
.+++|..-|++++.++|+...++.+++++|...|. ..+|.++|++..
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 34667888888899999999999999999987653 345555555554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.21 E-value=1.6 Score=44.27 Aligned_cols=86 Identities=16% Similarity=0.133 Sum_probs=71.2
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHH
Q 005265 536 DLLGRAGCLDEAKTLIEAM-PMQPDAVIWGSLL-AACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEV 613 (705)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 613 (705)
+-+.+.+.++.|..++.++ .+.||...|.+.- .++.+.+++..|..-+.++++.+|.....|..-+..+.+.+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 3445667788888888776 6778766665554 5688899999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 005265 614 VRVRKLMR 621 (705)
Q Consensus 614 ~~~~~~~~ 621 (705)
...++...
T Consensus 92 ~~~l~~~~ 99 (476)
T KOG0376|consen 92 LLDLEKVK 99 (476)
T ss_pred HHHHHHhh
Confidence 99998776
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.85 E-value=13 Score=33.24 Aligned_cols=95 Identities=15% Similarity=0.058 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh------
Q 005265 458 VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV--TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKD------ 529 (705)
Q Consensus 458 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~------ 529 (705)
..+..+..-|++.|+.+.|++.|.++.+....|... .+..+++.+...+++..+.....++.....-..|..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456778899999999999999999999976666654 678888999999999999988887754322111222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 005265 530 HYTCMVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~~ 554 (705)
+|..| .+...|++.+|-+.|-..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHcc
Confidence 22222 234578999999988776
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=84.69 E-value=42 Score=32.87 Aligned_cols=49 Identities=8% Similarity=0.221 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc--cC----ChHHHHHHHHHHHHcC
Q 005265 234 SDALEVFVRMMASGIEPDEVTLASVVSACAS--LA----AFKEGLQIHARLMRCE 282 (705)
Q Consensus 234 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~ 282 (705)
++.+++++.|.+.|++-+..+|.+..-.... .. ....+..+|+.|.+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 4566788888999988888887664444333 11 2345667777777654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.12 E-value=20 Score=30.47 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=38.4
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 005265 504 HAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMPMQP-DAVIWGSLLAACKV 572 (705)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~ 572 (705)
..++.+++..+++.|. -+.|+ ...-..-...+...|++++|..+|++..-.+ ....-.+|+..|..
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 4677777777777774 34555 2222333445677888888888888874332 33333344444433
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=83.71 E-value=16 Score=28.42 Aligned_cols=59 Identities=20% Similarity=0.169 Sum_probs=37.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhH
Q 005265 327 SGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTF 388 (705)
Q Consensus 327 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 388 (705)
..+...|++++|..+.+....||...|-++.. .+.|..+++..-+.+|...| .|...+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34556666666667777777777777766543 35677777777777777666 4444444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=83.66 E-value=1.6 Score=26.30 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=18.1
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGC 446 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~ 446 (705)
+.+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 467777777887887777777775
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.57 E-value=10 Score=36.38 Aligned_cols=101 Identities=16% Similarity=0.184 Sum_probs=75.5
Q ss_pred cCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC-C------CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 005265 180 SRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE-R------NIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDE 252 (705)
Q Consensus 180 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 252 (705)
.|.+....+...++..-....+++.+...+-+++. | +...+ ++++.+. .-++++++.++..=.+-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 45555666677777777777888888888777764 2 22222 2333333 34677999998888889999999
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 005265 253 VTLASVVSACASLAAFKEGLQIHARLMRCE 282 (705)
Q Consensus 253 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 282 (705)
++++.+++.+.+.+++..|.++.-.++...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999998888887764
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.37 E-value=21 Score=37.55 Aligned_cols=151 Identities=17% Similarity=0.043 Sum_probs=100.5
Q ss_pred HhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHH
Q 005265 437 MKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFS 516 (705)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 516 (705)
.-.|+++.|..++..+++ ..-+.++.-+.+.|-.++|+++- ..||.. | ....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d~r-F----elal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPDQR-F----ELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChhhh-h----hhhhhcCcHHHHHHHHH
Confidence 345777777777666653 23345556666777777776642 223322 2 22346789999988776
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 005265 517 SMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP 596 (705)
Q Consensus 517 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 596 (705)
+. .+..-|..|.++....|++..|.+.|.... -|..|+-.+...|+.+.-..+.....+....|
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--- 725 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--- 725 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence 44 245679999999999999999999998864 35566666777777665555555554444444
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 005265 597 YVLLSNMYAELGRWGEVVRVRKLM 620 (705)
Q Consensus 597 ~~~l~~~~~~~g~~~~A~~~~~~~ 620 (705)
.-..+|...|+++++.+++..-
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHHhc
Confidence 3345677889999999888653
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.32 E-value=33 Score=30.66 Aligned_cols=90 Identities=9% Similarity=-0.017 Sum_probs=54.4
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH-----HHHHHHhcCChHHHHHHHHhCCCCCCHHH--HHHHHHHHH
Q 005265 499 LCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTC-----MVDLLGRAGCLDEAKTLIEAMPMQPDAVI--WGSLLAACK 571 (705)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~ 571 (705)
...+...|++++|...++..... |....+.. |.......|.+++|+..++... .++... ...-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHH
Confidence 34556677777777777755421 22223333 3455667788888888877764 232222 222334477
Q ss_pred hcCCHHHHHHHHHHHHhhCCCC
Q 005265 572 VHRNIMLGEYVAKKLLEIEPSN 593 (705)
Q Consensus 572 ~~g~~~~a~~~~~~~~~~~p~~ 593 (705)
..|+-++|+..|+++++.+++.
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HcCchHHHHHHHHHHHHccCCh
Confidence 7788888888888888776443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.08 E-value=1.8 Score=25.50 Aligned_cols=28 Identities=25% Similarity=0.397 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 596 PYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
++..++.++.+.|++++|.+.++++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678999999999999999999998864
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.74 E-value=8.4 Score=30.04 Aligned_cols=60 Identities=13% Similarity=0.208 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 005265 475 EALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVD 536 (705)
Q Consensus 475 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 536 (705)
+..+-++.+....+.|+.....+.+.+|-+.+++..|.++|+.+..+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555666666677889999999999999999999999999998866544 33336766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.69 E-value=10 Score=29.28 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 005265 473 GTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVD 536 (705)
Q Consensus 473 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 536 (705)
.-++.+-++.+....+.|+.....+.++||-+.+++..|.++|+.+..+.+ .+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 345666667777777899999999999999999999999999997754433 24445665543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.29 E-value=4.4 Score=37.12 Aligned_cols=84 Identities=11% Similarity=0.042 Sum_probs=38.2
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCCHHH
Q 005265 502 CSHAGLVEEGRKYFSSMSKEHGLAPLK-DHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIWGSLLAA-CKVHRNIML 578 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~~~g~~~~ 578 (705)
|.....++.|+..+.+.+ -+.|.. .-|..-+-.+.+..+++.+..=-.+. .+.||.+--...++. ......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 444445555555444333 344553 23333344444555555444333222 444554443333333 334445555
Q ss_pred HHHHHHHHHh
Q 005265 579 GEYVAKKLLE 588 (705)
Q Consensus 579 a~~~~~~~~~ 588 (705)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.14 E-value=18 Score=32.32 Aligned_cols=60 Identities=17% Similarity=0.032 Sum_probs=33.2
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 536 DLLGRAGCLDEAKTLIEAM-PMQPDA-VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
.++.+.+.++.|++-..+. .+.|.. ..+..-..+|.+...++.|+.-|+++++.+|....
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 3444555555555444333 333321 12222233466667788888888888888887643
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.71 E-value=76 Score=33.70 Aligned_cols=135 Identities=10% Similarity=0.025 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHhcCCC--CCcc-cHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhh
Q 005265 86 FTWNSIITGLLKWGFIDDASRLFASMPE--RDQC-SWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACA 162 (705)
Q Consensus 86 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 162 (705)
..|+.+|.---...+++.+..+++.+.. |... -|-.....=.+.|..+.+.++|++-.. |++.+...|...+..+.
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLK 124 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHh
Confidence 4455555544444445555555555543 3222 233333344556777778888877765 35556666666665544
Q ss_pred -CCCCcHHHHHHHHHHHHc-CCC-CChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHH
Q 005265 163 -GSVDFKMGTQVHALLSKS-RYS-SDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWN 221 (705)
Q Consensus 163 -~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 221 (705)
..|+.+.....|+..+.. |.. .....|...|..-..++++.....+++++.+--...|+
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~ 186 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLN 186 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhH
Confidence 456677777777776664 321 23445666666666777777777777777653333333
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.44 E-value=1.2 Score=38.18 Aligned_cols=84 Identities=12% Similarity=0.137 Sum_probs=50.4
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHH
Q 005265 157 ALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDA 236 (705)
Q Consensus 157 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 236 (705)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..+-+.|.++.+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555556666666667777777665555677777788888887777777777763322 3334455555555555555
Q ss_pred HHHHHHH
Q 005265 237 LEVFVRM 243 (705)
Q Consensus 237 ~~~~~~m 243 (705)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=81.14 E-value=3.5 Score=23.44 Aligned_cols=29 Identities=21% Similarity=0.025 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 005265 563 WGSLLAACKVHRNIMLGEYVAKKLLEIEP 591 (705)
Q Consensus 563 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 591 (705)
|..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444445555555555555555555544
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=81.13 E-value=4.2 Score=27.55 Aligned_cols=32 Identities=25% Similarity=0.140 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
..+.-++.+.|+++.|.+..+.+++.+|++..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 34566788999999999999999999999865
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.44 E-value=1.7e+02 Score=36.96 Aligned_cols=64 Identities=6% Similarity=0.001 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 560 AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 560 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
..+|......++..|.++.|....-++.+..++ ..+.-.+..+...|+-..|+.++++-.+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 458888888899999999999988888887743 4688999999999999999999998876543
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.20 E-value=29 Score=32.16 Aligned_cols=87 Identities=14% Similarity=0.064 Sum_probs=63.6
Q ss_pred HHHHhcCChHHHHHHHHhC---------CCCCCHHHH-----------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 536 DLLGRAGCLDEAKTLIEAM---------PMQPDAVIW-----------GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~~---------~~~p~~~~~-----------~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
+-+.+.|++.+|..-|.++ .-+|-..-| .+...++...|++-++++....++...|.+..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 3455666666666655543 223432222 22333455778999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 596 PYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+|..-+.+.+..=+..+|..-+.+..+
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 999999999988899999999988874
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.01 E-value=6.2 Score=38.11 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=29.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHH
Q 005265 465 VGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLVEEGRKYFS 516 (705)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 516 (705)
+-|.+.|.+++|+..|.+.+. +.| |.+++..-..+|.+...+..|..=..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 456666677777776666555 455 55666666666666555555444333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.8 bits (161), Expect = 2e-11
Identities = 24/212 (11%), Positives = 61/212 (28%), Gaps = 7/212 (3%)
Query: 150 SEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVF 209
E L G + + S+++ S A ++ A +
Sbjct: 91 WEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLL 150
Query: 210 DGMRER-------NIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSAC 262
+ + +N+++ + + G + + V + +G+ PD ++ A+ +
Sbjct: 151 VVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCM 210
Query: 263 ASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSE 322
++ M E L+ + L+ + L V + +
Sbjct: 211 GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPP 270
Query: 323 TSMVSGYAKASSVKSARLMFTKMLERNVVSWN 354
S + K R+ + K+
Sbjct: 271 PVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQC 302
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.4 bits (142), Expect = 3e-09
Identities = 28/229 (12%), Positives = 71/229 (31%), Gaps = 12/229 (5%)
Query: 321 SETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGEN----EEALGLFRLL 376
+ T + + S + A + + W +A Q +
Sbjct: 59 ALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH 118
Query: 377 KRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMY 436
+ + C L L AH +V H + + + + N+++ +
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPL---AHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175
Query: 437 MKCGSVEDGCRIFETMVER----DWVSWNAMIVGCAQNGYGTEALG-LFKKMLLCGEKPD 491
+ G+ ++ + + + D +S+ A + + + ++M G K
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235
Query: 492 HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGR 540
+ +L A +++ K + S L P + + D+ +
Sbjct: 236 ALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 55.2 bits (131), Expect = 6e-08
Identities = 19/166 (11%), Positives = 42/166 (25%), Gaps = 25/166 (15%)
Query: 232 PASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLG 291
A + + P E LA ++ + Q + +L
Sbjct: 72 SKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVE-QAPSGQHSQAQLSGQQQRL 130
Query: 292 NALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVV 351
A +L A + K +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVH------------------------HGQRQKRKLLTLD 166
Query: 352 SWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACAN 397
+NA++ G+ + G +E + + ++K + P ++ L
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.4 bits (129), Expect = 1e-07
Identities = 26/214 (12%), Positives = 57/214 (26%), Gaps = 10/214 (4%)
Query: 412 VKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER-------DWVSWNAMI 464
G + + + + + + +NA++
Sbjct: 113 APSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVM 172
Query: 465 VGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGL 524
+G A+ G E + + + G PD ++ L + + GL
Sbjct: 173 LGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGL 232
Query: 525 APLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAK 584
++ RA L + + P + K+ R++ +
Sbjct: 233 KLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP---PPVNTSKLLRDVYAKDGRVS 289
Query: 585 KLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRK 618
P + + ++ EL VV V K
Sbjct: 290 YPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEK 323
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.6 bits (119), Expect = 1e-06
Identities = 18/152 (11%), Positives = 46/152 (30%), Gaps = 12/152 (7%)
Query: 22 FAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMS 81
A+LL S+ + + ++Q + + L A +
Sbjct: 95 LARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHH 154
Query: 82 NK-------NVFTWNSIITGLLKWGFIDDASRLFASMPER----DQCSWNSMVSGFAQHD 130
+ + +N+++ G + G + + + + D S+ + + + D
Sbjct: 155 GQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
Query: 131 RFSEALG-YFVKMHSENFALSEYSFGSALSAC 161
+ + + +M E L LS
Sbjct: 215 QDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.9 bits (99), Expect = 4e-04
Identities = 22/183 (12%), Positives = 55/183 (30%), Gaps = 8/183 (4%)
Query: 113 ERDQCSWNSMVSGFAQHDRFSEALGYFVKMHS---ENFALSEYSFGSALSACAGSVDFKM 169
Q + D+ A V H + L+ + + + A FK
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 170 GTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVS-CARRVFDGMRERNI----VSWNSLI 224
V ++ + + D+ +A + G+ + + R + M + + + L+
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243
Query: 225 TCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKL 284
+ ++ +V P V + ++ + ++H L + L
Sbjct: 244 SEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCL 303
Query: 285 RND 287
Sbjct: 304 FEK 306
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 3e-07
Identities = 82/641 (12%), Positives = 179/641 (27%), Gaps = 189/641 (29%)
Query: 165 VDFKMGTQ-------VHALLSKSRYSSDVY---------MGSALID-MYGKCGRVSCARR 207
+DF+ G + + D + ID + VS R
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 208 VFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAA 267
+F + + + ++ FV + + L S + +
Sbjct: 67 LFWTLLSKQ-----------------EEMVQKFVE---EVLRINYKFLMSPIKTEQRQPS 106
Query: 268 FKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCG-----KLNEAR-CVFDRMPIRNVVS 321
+ I R ++L ND ++AK + R + + P +NV+
Sbjct: 107 MMTRMYIEQR----DRLYND-------NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 322 ETSMVSGYAK----ASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLK 377
+ ++ G K S + ++ + W L + +L
Sbjct: 156 D-GVL-GSGKTWVALDVCLSYK--VQCKMDFKI-FWLNL-------KNCNSPETVLEML- 202
Query: 378 RESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYM 437
+ + + N + + ++++L H ++ LR L + N L+ +
Sbjct: 203 -QKLL--YQIDPNWTSRSDHSSNIKL----RIHSIQAELRRLLKSKP---YENCLLVL-- 250
Query: 438 KCGSVEDGCRIFETMVERDWVSWNAMIVGC---------------------------AQN 470
+ V+ WNA + C
Sbjct: 251 -----LN--------VQNAKA-WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 471 GYGT-EALGLFKKML----------LCGEKPDHVTMIGVLCACSHAGLVEEGRKYFS--- 516
E L K L + P +++I + +
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKL 355
Query: 517 ----SMSKEHGLAP--LKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAAC 570
S L P + + L I P ++IW ++ +
Sbjct: 356 TTIIESSLNV-LEPAEYRKMF---DRL----SVFPP-SAHI---PTILLSLIWFDVIKSD 403
Query: 571 KVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRV--RKLMRKRGVVK- 627
+++ + L+E +P S + + ++Y EL E R ++ + K
Sbjct: 404 V---MVVVNKLHKYSLVEKQPKES--TISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 628 --QPGCS-------WIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVPNAS- 677
+ +GH + +R L + ++L + L ++++ NAS
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 678 -------DDEAYEEQNGSNSTSDCQ-----IDF--QVETAI 704
+ Y+ N + +DF ++E +
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 705 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.63 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.62 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.59 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.55 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.55 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.52 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.51 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.51 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.49 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.48 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.48 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.48 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.47 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.47 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.46 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.46 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.44 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.44 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.42 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.42 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.37 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.36 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.34 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.33 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.31 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.31 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.31 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.31 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.28 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.28 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.27 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.27 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.22 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.19 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.16 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.13 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.12 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.11 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.09 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.07 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.05 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.03 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.03 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.02 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.01 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.01 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.99 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.97 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.96 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.94 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.93 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.93 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.92 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.92 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.91 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.88 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.83 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.81 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.81 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.81 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.79 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.78 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.76 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.73 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.72 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.72 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.72 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.71 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.71 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.71 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.69 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.67 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.66 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.64 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.62 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.6 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.6 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.59 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.59 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.58 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.58 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.56 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.55 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.54 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.53 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.53 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.53 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.52 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.49 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.49 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.48 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.48 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.47 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.46 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.46 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.45 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.44 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.44 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.44 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.43 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.42 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.39 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.38 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.38 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.38 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.37 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.35 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.29 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.29 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.28 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.28 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.27 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.27 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.26 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.25 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.25 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.23 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.22 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.22 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.22 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.22 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.21 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.2 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.15 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.14 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.14 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.11 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.1 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.09 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.09 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.08 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.08 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.04 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.04 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.04 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.04 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.02 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.02 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.02 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.0 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.99 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.98 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.97 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.97 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.96 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.95 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.92 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.92 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.9 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.86 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.86 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.83 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.78 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.68 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.66 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.6 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.59 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.58 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.53 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.46 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.41 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.4 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.3 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.28 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.19 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.13 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.12 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.11 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.95 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.94 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.93 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.92 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.89 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.6 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.52 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.5 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.35 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.23 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.13 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.98 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.9 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.83 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.78 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.61 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.41 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.18 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.1 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.67 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.25 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.88 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.85 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.64 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.9 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.32 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 91.26 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.27 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.5 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 89.04 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 88.96 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.63 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.08 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 87.54 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.09 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 86.23 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 85.88 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.44 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 85.17 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.56 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.49 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 83.47 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 83.02 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.65 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 82.39 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 81.58 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 81.15 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=364.57 Aligned_cols=480 Identities=8% Similarity=-0.078 Sum_probs=314.0
Q ss_pred HHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHH
Q 005265 95 LLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVH 174 (705)
Q Consensus 95 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 174 (705)
+.+.|.+..+...+..++.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45567777777888888878888899999999999999999999999885 4578888888999999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCC-------------------CcchHHHHHHHHHhcCChhH
Q 005265 175 ALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRER-------------------NIVSWNSLITCYEQNGPASD 235 (705)
Q Consensus 175 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 235 (705)
+.+... +++..+++.++.+|.+.|++++|.++|+++... ++.+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 887644 678889999999999999999999999965433 36778888888888888888
Q ss_pred HHHHHHHHHHCCCCCCH-hHHHHHHHHHHccCChHHH--HHH-HHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 005265 236 ALEVFVRMMASGIEPDE-VTLASVVSACASLAAFKEG--LQI-HARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVF 311 (705)
Q Consensus 236 A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 311 (705)
|+++|++|.+.+ |+. ..+..+...+...+..+.+ ..+ +..+...+ ..+...+++.++..|.+.|++++|.
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~--- 292 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED-AAFLRSLYMLKLNKTSHEDELRRAE--- 292 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG-HHHHHHHHHTTSCTTTTHHHHHHHH---
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccch-HHHHHHHHHHHHHHHcCcchHHHHH---
Confidence 888888887743 433 3333333322222111111 011 22222222 2223334444455555555556565
Q ss_pred hhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCC--CCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHH
Q 005265 312 DRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLE--RNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFG 389 (705)
Q Consensus 312 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 389 (705)
++|+++.+ ++..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..++.
T Consensus 293 ----------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 343 (597)
T 2xpi_A 293 ----------------------------DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYP 343 (597)
T ss_dssp ----------------------------HHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHH
T ss_pred ----------------------------HHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHH
Confidence 55555544 566666667777777777777777777666544 23555666
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHH
Q 005265 390 NLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVG 466 (705)
Q Consensus 390 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 466 (705)
.++.++.+.|++++|..++..+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 416 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDRH-------PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHS 416 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-------TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 66667777777777777776666554 3566677777777777777777777777654 2356677777777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDE 546 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 546 (705)
|.+.|++++|+++|+++.+.+ +++..++..++.+|.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++
T Consensus 417 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 493 (597)
T 2xpi_A 417 FAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQT 493 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHH
Confidence 777777777777777776631 224556777777777777777777777776543 12346667777777777777777
Q ss_pred HHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHH
Q 005265 547 AKTLIEAM-------PMQPD--AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVR 617 (705)
Q Consensus 547 A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 617 (705)
|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++++.+|+++.+|..++.+|.+.|++++|.+.+
T Consensus 494 A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 494 AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 77777666 33565 5677777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhC
Q 005265 618 KLMRKR 623 (705)
Q Consensus 618 ~~~~~~ 623 (705)
+++.+.
T Consensus 574 ~~~l~~ 579 (597)
T 2xpi_A 574 HESLAI 579 (597)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=349.65 Aligned_cols=448 Identities=10% Similarity=0.002 Sum_probs=344.3
Q ss_pred HhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHH
Q 005265 127 AQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCAR 206 (705)
Q Consensus 127 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 206 (705)
.+.|.+..+...+..+ ..++...|+.++..|.+.|+++.|..+++.+.+. .|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 3445555555555544 3357889999999999999999999999999864 567788999999999999999999
Q ss_pred HHHhccC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHC---------------CCCCCHhHHHHHHHHHHccCChH
Q 005265 207 RVFDGMR--ERNIVSWNSLITCYEQNGPASDALEVFVRMMAS---------------GIEPDEVTLASVVSACASLAAFK 269 (705)
Q Consensus 207 ~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~t~~~ll~~~~~~~~~~ 269 (705)
.+|+.+. .++..+|+.++.+|.+.|++++|.++|+++... |..++..+|..++.++.+.|+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 138 CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9999984 588899999999999999999999999853221 11223444444445555555555
Q ss_pred HHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHH-HHhcCC-
Q 005265 270 EGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLM-FTKMLE- 347 (705)
Q Consensus 270 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~- 347 (705)
+|...|+++.+.+ +.+...+..+...+...+..+.+. .. .+ +..+..
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~--~~---------------------------~l~~~~~~~~ 266 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDL--VL---------------------------KLNYSTYSKE 266 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHH--HH---------------------------HSCTHHHHGG
T ss_pred HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHH--HH---------------------------hcCCcccccc
Confidence 5555555444432 222233333332222221111110 00 00 122211
Q ss_pred ---CCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCC
Q 005265 348 ---RNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEES 424 (705)
Q Consensus 348 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (705)
....+|+.++..|.+.|++++|..+|+++.+. .++..++..++.++.+.|++++|..+++.+.+.+. .
T Consensus 267 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~ 337 (597)
T 2xpi_A 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-------Y 337 (597)
T ss_dssp GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T
T ss_pred hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-------c
Confidence 23345677788899999999999999999875 58999999999999999999999999999998874 5
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHH
Q 005265 425 DIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLC 500 (705)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 500 (705)
+..+++.++.+|.+.|++++|..+|+++. ..+..+|+.++..|.+.|++++|.++|+++.+ ..|+ ..+|..++.
T Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~ 415 (597)
T 2xpi_A 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSST--MDPQFGPAWIGFAH 415 (597)
T ss_dssp CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 78889999999999999999999999885 34788999999999999999999999999998 4554 569999999
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHH
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-P-MQPDAVIWGSLLAACKVHRNIML 578 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~ 578 (705)
++.+.|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++ . .+.+..+|+.++..|.+.|++++
T Consensus 416 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 493 (597)
T 2xpi_A 416 SFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQT 493 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999753 2346889999999999999999999999998 2 23478899999999999999999
Q ss_pred HHHHHHHHHhh------CCCC-CchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 579 GEYVAKKLLEI------EPSN-SGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 579 a~~~~~~~~~~------~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
|.+.++++++. +|++ ..+|..++.+|.+.|++++|.+.++++.+.+
T Consensus 494 A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 494 AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 99999999988 5554 5679999999999999999999999998765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-25 Score=230.31 Aligned_cols=368 Identities=13% Similarity=0.101 Sum_probs=267.8
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCCh
Q 005265 226 CYEQNGPASDALEVFVRMMASGIEPDE-VTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKL 304 (705)
Q Consensus 226 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 304 (705)
.+.+.|++++|++.++++.+. .|+. ..+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCH
Confidence 344555555555555555442 2332 233333444445555555555555555542 44455555555555555666
Q ss_pred HHHHHHHhhCC---CCCcccHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CeehHHHHHHHHHHcCChHHHHHHHHHhhh
Q 005265 305 NEARCVFDRMP---IRNVVSETSMVSGYAKASSVKSARLMFTKMLE--R-NVVSWNALIAGYTQNGENEEALGLFRLLKR 378 (705)
Q Consensus 305 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 378 (705)
++|...|+++. ..+..+|..+...+.+.|++++|.+.|+++.. | +...+..+...+...|++++|...|+++.+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66555555543 12233455555555555555555566665532 3 345567777888888999999999988887
Q ss_pred CCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CC
Q 005265 379 ESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ER 455 (705)
Q Consensus 379 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~ 455 (705)
.. +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...|++.. ..
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 235 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 53 2345678888888888899999999998888876 4567888889999999999999999988765 33
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 005265 456 DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCM 534 (705)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 534 (705)
+..+|..+...|...|++++|++.|+++.+ ..|+ ..++..+..++...|++++|...|+.+.+. .+.+..++..+
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 311 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNL 311 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHH
Confidence 677888999999999999999999999998 4565 457888888999999999999999988764 24458888999
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005265 535 VDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGR 609 (705)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 609 (705)
..++.+.|++++|.+.++++ ...| +..++..+...+.+.|++++|...++++++++|+++.+|..++.++...|+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999887 4445 577888899999999999999999999999999999999999998887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-25 Score=229.68 Aligned_cols=348 Identities=15% Similarity=0.118 Sum_probs=307.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHhcCCH
Q 005265 259 VSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMP---IRNVVSETSMVSGYAKASSV 335 (705)
Q Consensus 259 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 335 (705)
...+.+.|++++|...+..+.+.. +.+...+..+...+...|++++|...++... ..+..+|..+...|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 445677899999999999999874 5667788888899999999999999998765 34667899999999999999
Q ss_pred HHHHHHHHhcCC--C-CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcch-hhHHHHHHHHhhcccHHHHHHHHHHH
Q 005265 336 KSARLMFTKMLE--R-NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTH-YTFGNLLNACANLADLQLGRQAHTHV 411 (705)
Q Consensus 336 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~ 411 (705)
++|...|+++.. | +..+|..+...+.+.|++++|+..|+++.+. .|+. ..+..+...+...|++++|...+..+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999843 3 4557999999999999999999999999875 3554 45666777888899999999999999
Q ss_pred HHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 005265 412 VKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGE 488 (705)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 488 (705)
.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+ .
T Consensus 162 l~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~ 232 (388)
T 1w3b_A 162 IETQ-------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--L 232 (388)
T ss_dssp HHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--H
T ss_pred HHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--h
Confidence 9876 46788999999999999999999999998863 3677899999999999999999999999998 5
Q ss_pred CCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHH
Q 005265 489 KPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-P-MQPDAVIWG 564 (705)
Q Consensus 489 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~ 564 (705)
.|+ ..++..+..++...|++++|...|+.+.+. .|+ ...|..++.+|.+.|++++|.+.|+++ . .+++..+|.
T Consensus 233 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 309 (388)
T 1w3b_A 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH
Confidence 675 468889999999999999999999998753 454 788999999999999999999999998 2 345788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 565 SLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 565 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+...+...|++++|...++++++..|++...+..++.+|.+.|++++|.+.++++.+
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999984
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=243.91 Aligned_cols=184 Identities=13% Similarity=0.159 Sum_probs=174.9
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcc---------cHHHHHHHHHHHHHhCCCCCCC
Q 005265 351 VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLA---------DLQLGRQAHTHVVKHGLRFLSG 421 (705)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~ 421 (705)
..++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|++.+ .++.|.++|++|.+.|+
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~----- 101 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV----- 101 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC-----
Confidence 4588899999999999999999999999999999999999999998654 47899999999999999
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 005265 422 EESDIFVGNSLIDMYMKCGSVEDGCRIFETMV----ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIG 497 (705)
Q Consensus 422 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 497 (705)
.||..+|++||.+|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.
T Consensus 102 -~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~ 180 (501)
T 4g26_A 102 -VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAA 180 (501)
T ss_dssp -CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 9999999999999999999999999999996 57999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 005265 498 VLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRA 541 (705)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 541 (705)
++.+|++.|++++|.+++++|... +..|+..+|+.++..|...
T Consensus 181 Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 181 LLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999655 9999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=242.40 Aligned_cols=217 Identities=12% Similarity=0.082 Sum_probs=173.2
Q ss_pred HHHHHHHHHhHhCCCCCChh-hHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhc
Q 005265 133 SEALGYFVKMHSENFALSEY-SFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDG 211 (705)
Q Consensus 133 ~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 211 (705)
..+..+.+++.+.++.+.+. .++.+|.+|++.|+++.|.++|++|.+.|+.||..+||+||.+|++.+....+
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34556667777777765544 58888999999999999999999999999999999999999999887764332
Q ss_pred cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHH
Q 005265 212 MRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLG 291 (705)
Q Consensus 212 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 291 (705)
.+.+..+.|.++|++|...|+.||..||+++|.+|++.|++++|.++++.|.+.| +.||..+|
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~~ty 143 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG-IQPRLRSY 143 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccee
Confidence 2244567888999999999999999999999999999999999999999998888 99999999
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHH
Q 005265 292 NALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALG 371 (705)
Q Consensus 292 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 371 (705)
+++|.+|++.|++++|.++|++|. +.-..||..+|++||.+|++.|+.++|.+
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~---------------------------~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ 196 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMV---------------------------ESEVVPEEPELAALLKVSMDTKNADKVYK 196 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH---------------------------HTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHH---------------------------hcCCCCCHHHHHHHHHHHhhCCCHHHHHH
Confidence 999999999999999997766443 22256899999999999999999999999
Q ss_pred HHHHhhhCCCCcchhhHHHHHHHHhhcc
Q 005265 372 LFRLLKRESVCPTHYTFGNLLNACANLA 399 (705)
Q Consensus 372 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 399 (705)
+|++|.+.|..|+..||+.++..++..+
T Consensus 197 ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 197 TLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999987654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-22 Score=213.66 Aligned_cols=422 Identities=10% Similarity=0.003 Sum_probs=300.8
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHhccCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc
Q 005265 187 YMGSALIDMYGKCGRVSCARRVFDGMRE--RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACAS 264 (705)
Q Consensus 187 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 264 (705)
..+..+...+.+.|++++|...|+++.+ |+..+|..+..++.+.|++++|+..++++.+.+ +.+..++..+..++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 3455566667777777777777777653 666677777777777777777777777776643 2234566667777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC----CcccHHHH---HHHHHhcCCHHH
Q 005265 265 LAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIR----NVVSETSM---VSGYAKASSVKS 337 (705)
Q Consensus 265 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l---i~~~~~~~~~~~ 337 (705)
.|++++|...+..+.+.. +++......++..+.+......+.+.+..+... +...+... ............
T Consensus 86 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 777777777777777654 334444444444444433333333333221100 00000000 000001111111
Q ss_pred HHHHHHhcCC---------C-CeehHHHHHHHHHH---cCChHHHHHHHHHhhh-----CCCC--------cchhhHHHH
Q 005265 338 ARLMFTKMLE---------R-NVVSWNALIAGYTQ---NGENEEALGLFRLLKR-----ESVC--------PTHYTFGNL 391 (705)
Q Consensus 338 A~~~~~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~t~~~l 391 (705)
+...+..... + +...+......+.. .|++++|+..|+++.+ ..-. .+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1112211111 1 13344444454554 8999999999999987 3112 234567778
Q ss_pred HHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHH
Q 005265 392 LNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCA 468 (705)
Q Consensus 392 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 468 (705)
...+...|+++.|...+..+.+... . ..++..+..+|...|++++|...|+++.. .+...|..+...|.
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~------~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFP------R--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCC------C--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCc------c--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHH
Confidence 8889999999999999999998864 3 88899999999999999999999998763 36778999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 005265 469 QNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEA 547 (705)
Q Consensus 469 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 547 (705)
..|++++|+..|+++.+. .|+ ..++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|
T Consensus 316 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999984 454 4688888999999999999999999987652 23477899999999999999999
Q ss_pred HHHHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHH
Q 005265 548 KTLIEAM----PMQPD----AVIWGSLLAACKV---HRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRV 616 (705)
Q Consensus 548 ~~~~~~~----~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 616 (705)
...++++ +..|+ ..+|..+...+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999887 22222 4488899999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhC
Q 005265 617 RKLMRKR 623 (705)
Q Consensus 617 ~~~~~~~ 623 (705)
+++..+.
T Consensus 472 ~~~a~~~ 478 (514)
T 2gw1_A 472 FEESADL 478 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999864
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=217.76 Aligned_cols=444 Identities=10% Similarity=-0.019 Sum_probs=286.8
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhh
Q 005265 118 SWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYG 197 (705)
Q Consensus 118 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 197 (705)
.|......+.+.|++++|+..|+++.+.. |+..++..+..++...|+++.|...++.+++.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34555666667777777777777776654 566667777777777777777777777776654 224556666667777
Q ss_pred cCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHH
Q 005265 198 KCGRVSCARRVFDGMRE---RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQI 274 (705)
Q Consensus 198 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 274 (705)
+.|++++|...|+++.. ++......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 77777777776666542 223333334443333333333333333322222222222111100000000000000000
Q ss_pred HHHHHHcCCC---------CCChhHHHHHHHHHHh---cCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 005265 275 HARLMRCEKL---------RNDLVLGNALVDMYAK---CGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMF 342 (705)
Q Consensus 275 ~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 342 (705)
... ...... +.+...+..+...+.. .|++++|...|+++. +.+
T Consensus 165 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~------------------------~~~ 219 (514)
T 2gw1_A 165 ASF-FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA------------------------RLF 219 (514)
T ss_dssp HHH-HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH------------------------HHH
T ss_pred HHH-HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH------------------------HHh
Confidence 000 000000 1112222222222222 444555554443221 111
Q ss_pred HhcC----------CCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHH
Q 005265 343 TKML----------ERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVV 412 (705)
Q Consensus 343 ~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 412 (705)
+... ..+..+|..+...+...|++++|+..|+++.+.+ |+...+..+..++...|+++.|...+..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 220 EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp HHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred hhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 1111 1134567788889999999999999999988765 347778888888999999999999999988
Q ss_pred HhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 005265 413 KHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEK 489 (705)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 489 (705)
+.. +.+..++..+..+|...|++++|...|+++. ..+...|..+...|...|++++|+..++++.+. .
T Consensus 298 ~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~ 368 (514)
T 2gw1_A 298 KLD-------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--F 368 (514)
T ss_dssp TTC-------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--S
T ss_pred hcC-------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--c
Confidence 776 4577889999999999999999999999875 346778999999999999999999999999884 4
Q ss_pred CC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHh---cCChHHHHHHHHhC-CCCC-C
Q 005265 490 PD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGR---AGCLDEAKTLIEAM-PMQP-D 559 (705)
Q Consensus 490 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~ 559 (705)
|+ ..++..+...+...|++++|...++.+.+...-.++ ...+..+..+|.+ .|++++|.+.++++ ...| +
T Consensus 369 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 369 PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence 54 467888889999999999999999988765322333 3488999999999 99999999999987 3334 6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 005265 560 AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLL 600 (705)
Q Consensus 560 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 600 (705)
..++..+...+...|++++|...+++++++.|+++..+..+
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 77888999999999999999999999999999987766555
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-21 Score=204.85 Aligned_cols=317 Identities=13% Similarity=0.062 Sum_probs=239.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeehHHHHHHHHHH
Q 005265 289 VLGNALVDMYAKCGKLNEARCVFDRMP---IRNVVSETSMVSGYAKASSVKSARLMFTKMLE---RNVVSWNALIAGYTQ 362 (705)
Q Consensus 289 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 362 (705)
..+..+...|.+.|++++|...|+++. ..+...|..+...+...|++++|...|+++.+ .+..+|..+...|..
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 106 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 334444444444444444444444332 12333344444444444444444455555422 345677788888888
Q ss_pred cCChHHHHHHHHHhhhCCCCcch----hhHHHH------------HHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcH
Q 005265 363 NGENEEALGLFRLLKRESVCPTH----YTFGNL------------LNACANLADLQLGRQAHTHVVKHGLRFLSGEESDI 426 (705)
Q Consensus 363 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 426 (705)
.|++++|...|+++.+.+ |+. ..+..+ ...+...|+++.|...+..+.+.. +.+.
T Consensus 107 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~ 177 (450)
T 2y4t_A 107 QGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-------VWDA 177 (450)
T ss_dssp TTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred cCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCh
Confidence 888888888888887753 432 344433 344788999999999999999876 4688
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh-HHHH----
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVT-MIGV---- 498 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l---- 498 (705)
.++..++.+|.+.|++++|...|+++. ..+..+|..++..|...|++++|+..|+++.+ ..|+... +..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHH
Confidence 899999999999999999999999886 35788999999999999999999999999998 5666543 3333
Q ss_pred --------HHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 005265 499 --------LCACSHAGLVEEGRKYFSSMSKEHGLAPL-----KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIW 563 (705)
Q Consensus 499 --------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 563 (705)
...|...|++++|..+|+.+.+. .|+ ...+..++.++.+.|++++|+..++++ ...| +..+|
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 332 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 78899999999999999999764 454 457889999999999999999999987 4445 68899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH------------HHhcC-----ChhHHHHHHHH
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNM------------YAELG-----RWGEVVRVRKL 619 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~ 619 (705)
..+..+|...|++++|...++++++++|+++..+..++.+ |...| +.+++.+.+++
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999844 55555 55566776665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.8e-21 Score=205.47 Aligned_cols=246 Identities=10% Similarity=0.007 Sum_probs=192.1
Q ss_pred CChHHHHHHHHHhhhCCCCcc--------hhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHH
Q 005265 364 GENEEALGLFRLLKRESVCPT--------HYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDM 435 (705)
Q Consensus 364 g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 435 (705)
|++++|+.+|+++.+.. |+ ..++..+...+...|+++.|...+..+.+.. |+...+..+...
T Consensus 216 ~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~l~~~ 285 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--------PTPNSYIFLALT 285 (537)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------CCchHHHHHHHH
Confidence 46778888888877643 33 1235555566777788888888888888765 347788888888
Q ss_pred HHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHH
Q 005265 436 YMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEG 511 (705)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a 511 (705)
|...|++++|...|+++. ..+..+|..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|++++|
T Consensus 286 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp TCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 888999999998888775 346778888888899999999999999998883 454 45788888888899999999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----C----CCCCHHHHHHHHHHHHhc----------
Q 005265 512 RKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM----P----MQPDAVIWGSLLAACKVH---------- 573 (705)
Q Consensus 512 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~~~~~~~l~~~~~~~---------- 573 (705)
..+++.+.+.. +.+...+..+...|.+.|++++|.+.|+++ + .......+..+...+...
T Consensus 364 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 441 (537)
T 3fp2_A 364 EAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDE 441 (537)
T ss_dssp HHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCH
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhH
Confidence 99999887642 233678888889999999999999998876 1 111223344555667777
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 574 RNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 574 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
|++++|...++++++.+|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 442 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998864
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-20 Score=195.80 Aligned_cols=360 Identities=12% Similarity=0.039 Sum_probs=212.5
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHH
Q 005265 218 VSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDM 297 (705)
Q Consensus 218 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 297 (705)
..|..+...+.+.|++++|+.+|+++.... +.+..++..+...+...|++++|...+..+++.. +.+..++..+..+
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHH
Confidence 344555555555555555555555555421 2234455555555555555555555555555543 3344555555566
Q ss_pred HHhcCChHHHHHHHhhCCCCCc------ccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHH
Q 005265 298 YAKCGKLNEARCVFDRMPIRNV------VSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALG 371 (705)
Q Consensus 298 ~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 371 (705)
|.+.|++++|...|+++...++ ..+..++..+.. ..+..+...+...|++++|+.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666655554432211 222222222110 011222334555566666666
Q ss_pred HHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHc
Q 005265 372 LFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFET 451 (705)
Q Consensus 372 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (705)
.|+++.+.. +.+...+..+..++...|+++.|...+..+.+.. +.+..++..+..+|...|++++|...|++
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-------NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-------CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666655432 2244455555556666666666666666655543 34556666666666666666666666666
Q ss_pred cCC--C-ChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHhccCcHHHH
Q 005265 452 MVE--R-DWVSWNAM------------IVGCAQNGYGTEALGLFKKMLLCGEKPD-----HVTMIGVLCACSHAGLVEEG 511 (705)
Q Consensus 452 ~~~--~-~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a 511 (705)
+.. | +...+..+ ...+...|++++|+..|+++.+ ..|+ ...+..+..++.+.|++++|
T Consensus 237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 542 2 33334333 7788888899999999988888 4565 23677778888888999999
Q ss_pred HHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC--
Q 005265 512 RKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAA------------CKVHR-- 574 (705)
Q Consensus 512 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~g-- 574 (705)
...++.+.+. .| +...|..+..+|...|++++|...++++ ...|+ ...+..+..+ |...|
T Consensus 315 ~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 315 IRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 9988887654 34 4788888888899999999999988887 55664 4555555532 33334
Q ss_pred ---CHHHHHHHHHH-HHhhCCCCCc----------hHHHHHHHHHhcCChhH
Q 005265 575 ---NIMLGEYVAKK-LLEIEPSNSG----------PYVLLSNMYAELGRWGE 612 (705)
Q Consensus 575 ---~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 612 (705)
+.+++.+.+++ +++..|++.. .+..+..+|...|+.++
T Consensus 392 ~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 392 RNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp TTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 66778888887 6777887543 23445555555555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-20 Score=200.23 Aligned_cols=427 Identities=10% Similarity=-0.016 Sum_probs=287.6
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 005265 117 CSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMY 196 (705)
Q Consensus 117 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 196 (705)
..|..+...+.+.|++++|+..|+++.+..+ .+..++..+..++...|+++.|...++.+++... .+...+..+..+|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHH
Confidence 3455566666666777777777776666532 2455666666666666666666666666666532 2455566666666
Q ss_pred hcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCCCHhHHHHHHHHHHccCChHH
Q 005265 197 GKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMAS------GIEPDEVTLASVVSACASLAAFKE 270 (705)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~ 270 (705)
.+.|++++|.+.|+.+. .+....+..+..+...+....|...++++... ...|+.
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~------------------ 164 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN------------------ 164 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH------------------
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH------------------
Confidence 66666666666664332 11222222233344444445566666555432 111222
Q ss_pred HHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcc---cHHHHHHHHH--------hcCCHHHHH
Q 005265 271 GLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVV---SETSMVSGYA--------KASSVKSAR 339 (705)
Q Consensus 271 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~--------~~~~~~~A~ 339 (705)
..+..+....+.+.+...+......+.. ....+...+. ..|++++|.
T Consensus 165 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~ 222 (537)
T 3fp2_A 165 ----------------------TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKST 222 (537)
T ss_dssp ----------------------HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred ----------------------hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 2222333344444444444443332221 1111211111 124667777
Q ss_pred HHHHhcCCCCe----------ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHH
Q 005265 340 LMFTKMLERNV----------VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHT 409 (705)
Q Consensus 340 ~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 409 (705)
..|+++.+.++ .+|..+...+...|++++|+..|++..+. .|+...+..+...+...|+++.|...+.
T Consensus 223 ~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77777755322 24666778888999999999999999885 4667788888889999999999999999
Q ss_pred HHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 005265 410 HVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLC 486 (705)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 486 (705)
.+.+.. +.+..++..+...|...|++++|...|+++. ..+...|..+...|...|++++|...++++.+.
T Consensus 301 ~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 301 KAVDLN-------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999887 4678889999999999999999999999875 336778999999999999999999999999984
Q ss_pred CCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhc----------CChHHHHHHH
Q 005265 487 GEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRA----------GCLDEAKTLI 551 (705)
Q Consensus 487 g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~ 551 (705)
.|+ ...+..+...+...|++++|...|+.+.+...-.++ ...+..+..+|.+. |++++|...|
T Consensus 374 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 374 --FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp --CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred --CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 455 458888899999999999999999988654311111 22345556778888 9999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 005265 552 EAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPY 597 (705)
Q Consensus 552 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 597 (705)
+++ ...| +..++..+...+...|++++|.+.+++++++.|++....
T Consensus 452 ~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 452 TKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 987 3344 678899999999999999999999999999999886643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-17 Score=179.08 Aligned_cols=519 Identities=12% Similarity=0.076 Sum_probs=363.7
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCChhhHHHHHHHHHhcCCh
Q 005265 22 FAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLLKWGFI 101 (705)
Q Consensus 22 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 101 (705)
...|+..+=+.++..-.+..++.-...| ..++.++|+|...|..+++-.+. ....|..-=+.++.-||...++
T Consensus 842 ~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~------fL~~n~~yd~~~vgkyce~rDp 914 (1630)
T 1xi4_A 842 TDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPER------FLRENPYYDSRVVGKYCEKRDP 914 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHH------HhhccCcccHHHHHHHHHhcCc
Confidence 4555555555556555666666666655 56677777777777765543221 1122333333445566666666
Q ss_pred hHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Q 005265 102 DDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSR 181 (705)
Q Consensus 102 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 181 (705)
.-|.-.+++ ...-..||...-+++-++.--+.+- ++ -|...|..++.- +-+.-+++.++.....
T Consensus 915 ~la~iay~~-----g~~d~eli~vt~~n~l~k~~arylv---~r---~d~~lW~~vl~~-----~n~~RR~Lidqv~a~a 978 (1630)
T 1xi4_A 915 HLACVAYER-----GQCDLELINVCNENSLFKSLSRYLV---RR---KDPELWGSVLLE-----SNPYRRPLIDQVVQTA 978 (1630)
T ss_pred chHHHHhcc-----cCCcHHHHHHHhcchhHHHHHHHHH---Hh---cCHHHHHHHhcC-----CcHHHHHHHHHHHHhh
Confidence 666655553 2233456666666666654332221 11 255566666521 2233344555544433
Q ss_pred C--CCChhhHHHHHHHhhcCCChHHHHHHHhccCC-CC-----cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh
Q 005265 182 Y--SSDVYMGSALIDMYGKCGRVSCARRVFDGMRE-RN-----IVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEV 253 (705)
Q Consensus 182 ~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 253 (705)
+ ..++.--...+..|...|.+.+|++++++..- ++ ...-+.++.+..+. +..+..+...+....
T Consensus 979 L~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~------- 1050 (1630)
T 1xi4_A 979 LSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY------- 1050 (1630)
T ss_pred cccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------
Confidence 2 22344446677888899999999999998762 22 24456677777776 556666666665421
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcC
Q 005265 254 TLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKAS 333 (705)
Q Consensus 254 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 333 (705)
....+...|...|.+++|..+|++.. ......+.+ +-..|++++|.++.++.. +..+|..+..++...|
T Consensus 1051 d~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1051 DAPDIANIAISNELFEEAFAIFRKFD------VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred cHHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCC
Confidence 13336677788999999999998842 111222222 237789999999998774 4677889999999999
Q ss_pred CHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHH
Q 005265 334 SVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVK 413 (705)
Q Consensus 334 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 413 (705)
++++|.+.|.+. .|...|..++..+.+.|++++|++.|...++.. +++...+.+..+|++.++++....+. +
T Consensus 1120 ~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred CHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 999999999775 677888999999999999999999999877754 44444445888999999888644442 1
Q ss_pred hCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 005265 414 HGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV 493 (705)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 493 (705)
.++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. -+..
T Consensus 1192 ---------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A 1192 ---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTR 1251 (1630)
T ss_pred ---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHH
Confidence 456677778999999999999999999985 58999999999999999999999977 3558
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACK 571 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 571 (705)
+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++.. +.+|. ...|.-+...+.
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence 899999999999999999887653 3345667889999999999999999999877 55543 335544444444
Q ss_pred --hcCCHHHHHHHHHHHHhhCC-----CCCchHHHHHHHHHhcCChhHHHHH
Q 005265 572 --VHRNIMLGEYVAKKLLEIEP-----SNSGPYVLLSNMYAELGRWGEVVRV 616 (705)
Q Consensus 572 --~~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 616 (705)
+-++..++.+.|..-+.+.| .+...|..++-+|.+.|.|+.|...
T Consensus 1326 Ky~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 45677888888887777666 6677799999999999999999843
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-16 Score=171.30 Aligned_cols=283 Identities=12% Similarity=0.065 Sum_probs=227.1
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHH-HhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHH
Q 005265 294 LVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGY-AKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGL 372 (705)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 372 (705)
+...+...|.+++|..+|++.. .+...+..+ -..+++++|.++.++. .++.+|..+..++...|++++|+..
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4566777888888888888864 111212222 2778888888888876 3467889999999999999999999
Q ss_pred HHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHcc
Q 005265 373 FRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETM 452 (705)
Q Consensus 373 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 452 (705)
|.+. -|...|..++.+|.+.|+++++.+.+....+.. +++.+.+.++.+|++.+++++.....
T Consensus 1128 YiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--------~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1128 YIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--------RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--------ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 9653 467788889999999999999999999888764 33334446999999999998644443
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 005265 453 VERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYT 532 (705)
Q Consensus 453 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 532 (705)
..++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|.
T Consensus 1191 ~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWk 1254 (1630)
T 1xi4_A 1191 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWK 1254 (1630)
T ss_pred hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHH
Confidence 4557778888999999999999999999985 37899999999999999999999855 3568899
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc--CCh
Q 005265 533 CMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAEL--GRW 610 (705)
Q Consensus 533 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~ 610 (705)
.+..+|...|++..|....... ..++..+..++..|...|.+++|..+++.++.++|.+...|.-|+.+|++. ++.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHH
Confidence 8999999999999999987753 345556678999999999999999999999999999999998898888775 455
Q ss_pred hHHHHHHH
Q 005265 611 GEVVRVRK 618 (705)
Q Consensus 611 ~~A~~~~~ 618 (705)
.++.+.|.
T Consensus 1333 mEhlk~f~ 1340 (1630)
T 1xi4_A 1333 REHLELFW 1340 (1630)
T ss_pred HHHHHHHH
Confidence 56666554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.5e-18 Score=172.53 Aligned_cols=294 Identities=12% Similarity=0.038 Sum_probs=215.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChH
Q 005265 288 LVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENE 367 (705)
Q Consensus 288 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 367 (705)
...+..+...+...|++++|...|+++... .+.+..+|..+...+...|+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------------------------~p~~~~~~~~~a~~~~~~~~~~ 54 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG----------------------------DPDNYIAYYRRATVFLAMGKSK 54 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------------------CcccHHHHHHHHHHHHHccCHH
Confidence 344555666666666666666555543210 1123445555556666666666
Q ss_pred HHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCC---CcHhHHHHH------------
Q 005265 368 EALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEE---SDIFVGNSL------------ 432 (705)
Q Consensus 368 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~l------------ 432 (705)
+|+..|+++.+.. +.+...+..+...+...|+++.|...+..+.+.. + .+...+..+
T Consensus 55 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~ 126 (359)
T 3ieg_A 55 AALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-------PSEQEEKEAESQLVKADEMQRLRSQ 126 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-------CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CcccChHHHHHHHHHHHHHHHHHHH
Confidence 6666666655432 1233455555555666666666666666555443 2 233333333
Q ss_pred HHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcH
Q 005265 433 IDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLV 508 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~ 508 (705)
...+...|++++|...|+++. ..+...|..+...+...|++++|+..++++.+. .| +..++..+...+...|++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 678899999999999999875 347788999999999999999999999999984 45 456888999999999999
Q ss_pred HHHHHHHHHhHHhcCCCCC-hhHHH------------HHHHHHHhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHH
Q 005265 509 EEGRKYFSSMSKEHGLAPL-KDHYT------------CMVDLLGRAGCLDEAKTLIEAM-PMQPD-A----VIWGSLLAA 569 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~ 569 (705)
++|...++.+.+. .|+ ...+. .+...+.+.|++++|...++++ ...|+ . ..+..+...
T Consensus 205 ~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 205 ELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 9999999998764 344 33333 2367799999999999999987 33443 3 234557778
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 570 CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 570 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+...|++++|...++++++.+|+++..+..++.+|...|++++|.+.++++.+
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999884
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-17 Score=168.96 Aligned_cols=205 Identities=11% Similarity=0.010 Sum_probs=171.4
Q ss_pred HHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHH
Q 005265 392 LNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCA 468 (705)
Q Consensus 392 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 468 (705)
...+...|+++.|...+..+.+.. +.+..++..+..+|...|++++|...++++.+ .+...|..+...+.
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVC-------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467778889999999999988876 46788999999999999999999999998763 47789999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChh-hHH------------HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-h----hH
Q 005265 469 QNGYGTEALGLFKKMLLCGEKPDHV-TMI------------GVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-K----DH 530 (705)
Q Consensus 469 ~~g~~~~A~~~~~~m~~~g~~p~~~-~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~ 530 (705)
..|++++|...|++..+ ..|+.. .+. .+...+...|++++|...++.+.+. .|+ . ..
T Consensus 200 ~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~ 274 (359)
T 3ieg_A 200 QLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRS 274 (359)
T ss_dssp HHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHH
Confidence 99999999999999998 455543 222 2356688999999999999998765 344 2 33
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005265 531 YTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELG 608 (705)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 608 (705)
+..+..+|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|++...+..+..++...+
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 556888999999999999999988 3345 78899999999999999999999999999999999888888777765443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.4e-17 Score=161.65 Aligned_cols=243 Identities=9% Similarity=-0.022 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcc-cHHHHHHHHHHHHHhCCCCCCCCCCcHhHHH
Q 005265 352 SWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLA-DLQLGRQAHTHVVKHGLRFLSGEESDIFVGN 430 (705)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (705)
.+..++..+...|++++|..+++++.+.. +.+...+..+...+...| +++.|...+..+.+.. +.+...+.
T Consensus 58 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~ 129 (330)
T 3hym_B 58 CLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-------KTYGPAWI 129 (330)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-------TTCTHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-------CccHHHHH
Confidence 34444444555555555555555554432 122334444444444444 4555555555544433 23344455
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccC
Q 005265 431 SLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAG 506 (705)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 506 (705)
.+..+|...|++++|...|+++.+ .+...+..+...|...|++++|.+.++++.+ ..|+ ...+..+...+...|
T Consensus 130 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~ 207 (330)
T 3hym_B 130 AYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNG 207 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcc
Confidence 555555555555555555555431 2334444555555555555556555555555 2233 234555555555556
Q ss_pred cHHHHHHHHHHhHHhcC-------CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHH
Q 005265 507 LVEEGRKYFSSMSKEHG-------LAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQ-PDAVIWGSLLAACKVHRNIM 577 (705)
Q Consensus 507 ~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~ 577 (705)
++++|...++.+.+... .......+..+..+|.+.|++++|...++++ ... .+..+|..+...+...|+++
T Consensus 208 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 287 (330)
T 3hym_B 208 EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFE 287 (330)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHH
Confidence 66666655555543210 0122445555666666666666666666554 112 23455555666666666666
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005265 578 LGEYVAKKLLEIEPSNSGPYVLLSNMY 604 (705)
Q Consensus 578 ~a~~~~~~~~~~~p~~~~~~~~l~~~~ 604 (705)
+|.+.++++++++|+++..+..++.++
T Consensus 288 ~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 288 NAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 666666666666666666666666655
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.7e-17 Score=161.92 Aligned_cols=262 Identities=12% Similarity=0.039 Sum_probs=229.0
Q ss_pred CCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHh
Q 005265 348 RNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIF 427 (705)
Q Consensus 348 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 427 (705)
.++..+..++..+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...+..+.+.. +.+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~ 91 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-------PSNPV 91 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTSTH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCHH
Confidence 466678888899999999999999999998764 3345567778888899999999999999999876 46788
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHH
Q 005265 428 VGNSLIDMYMKCG-SVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCAC 502 (705)
Q Consensus 428 ~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 502 (705)
++..+...+...| ++++|...|++..+ .+...|..+...+...|++++|+..|+++.+. .|+ ...+..+...+
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHH
Confidence 8999999999999 99999999998763 36778999999999999999999999999984 454 45777788899
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CC----------CCCHHHHHHHHHHH
Q 005265 503 SHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PM----------QPDAVIWGSLLAAC 570 (705)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~ 570 (705)
...|++++|...++.+.+ ..|+ ...+..+...|.+.|++++|...++++ .. ..+..+|..+...+
T Consensus 170 ~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 999999999999998864 3454 788999999999999999999999876 11 33467899999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 571 KVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
...|++++|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999988763
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-17 Score=170.09 Aligned_cols=275 Identities=12% Similarity=0.014 Sum_probs=213.5
Q ss_pred CCHHHHHH-HHHhcCC-------CCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHH
Q 005265 333 SSVKSARL-MFTKMLE-------RNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLG 404 (705)
Q Consensus 333 ~~~~~A~~-~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 404 (705)
|++++|.. .|++... .+...|..+...+...|++++|+..|+++.+.. +.+..++..+..++...|+++.|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 45555555 5554422 134567778888888888888888888887754 33556777777788888888888
Q ss_pred HHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHH---------------HHHH
Q 005265 405 RQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER---DWVSWNA---------------MIVG 466 (705)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------li~~ 466 (705)
...+..+.+.. +.+..++..+..+|...|++++|.+.|+++... +...+.. .+..
T Consensus 118 ~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 118 ISALRRCLELK-------PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH
T ss_pred HHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 88888888776 357778888888888888888888888876532 2222221 1333
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPD---HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAG 542 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 542 (705)
+...|++++|+..|+++.+. .|+ ..++..+...+...|++++|...++.+.+. .| +...+..+..+|.+.|
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HhhcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcC
Confidence 34889999999999999984 555 578889999999999999999999998764 34 4788999999999999
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----------CchHHHHHHHHHhcCC
Q 005265 543 CLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN-----------SGPYVLLSNMYAELGR 609 (705)
Q Consensus 543 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~ 609 (705)
++++|...|+++ ...| +..++..+...+...|++++|...+++++++.|++ ..+|..++.+|...|+
T Consensus 266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 999999999987 3344 67889999999999999999999999999998877 7789999999999999
Q ss_pred hhHHHHHHHHH
Q 005265 610 WGEVVRVRKLM 620 (705)
Q Consensus 610 ~~~A~~~~~~~ 620 (705)
+++|..++++.
T Consensus 346 ~~~A~~~~~~~ 356 (368)
T 1fch_A 346 SDAYGAADARD 356 (368)
T ss_dssp GGGHHHHHTTC
T ss_pred hHhHHHhHHHH
Confidence 99999988643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-15 Score=159.58 Aligned_cols=365 Identities=12% Similarity=-0.005 Sum_probs=251.5
Q ss_pred ChhhHHHHHHHhhc----CCChHHHHHHHhccCC-CCcchHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHhHH
Q 005265 185 DVYMGSALIDMYGK----CGRVSCARRVFDGMRE-RNIVSWNSLITCYEQ----NGPASDALEVFVRMMASGIEPDEVTL 255 (705)
Q Consensus 185 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 255 (705)
+...+..|...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44444555555554 5666666666655432 344555556666665 566666666666666543 33444
Q ss_pred HHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHh----cCChHHHHHHHhhCCCCCcccHHHHHH
Q 005265 256 ASVVSACAS----LAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAK----CGKLNEARCVFDRMPIRNVVSETSMVS 327 (705)
Q Consensus 256 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~li~ 327 (705)
..+...+.. .+++++|...+++..+.+ +...+..|...|.. .++.++|.+.
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~----------------- 173 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREW----------------- 173 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHH-----------------
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHH-----------------
Confidence 444455544 556666666666665543 34445555555554 4555555544
Q ss_pred HHHhcCCHHHHHHHHHhcCC-CCeehHHHHHHHHHH----cCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhh----c
Q 005265 328 GYAKASSVKSARLMFTKMLE-RNVVSWNALIAGYTQ----NGENEEALGLFRLLKRESVCPTHYTFGNLLNACAN----L 398 (705)
Q Consensus 328 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~ 398 (705)
|++..+ .++..+..+...|.. .+++++|+.+|++..+.| +...+..+...+.. .
T Consensus 174 --------------~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~ 236 (490)
T 2xm6_A 174 --------------YSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVT 236 (490)
T ss_dssp --------------HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred --------------HHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 443322 355566677777776 778888888888877654 34455556566654 6
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHccCCC-ChhHHHHHHHHHHHc---
Q 005265 399 ADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMK----CGSVEDGCRIFETMVER-DWVSWNAMIVGCAQN--- 470 (705)
Q Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~--- 470 (705)
++++.|...+....+.+ +...+..+..+|.. .+++++|...|++..+. +...+..+...|...
T Consensus 237 ~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g 307 (490)
T 2xm6_A 237 QDYTQSRVLFSQSAEQG---------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEG 307 (490)
T ss_dssp CCHHHHHHHHHHHHTTT---------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTT
T ss_pred CCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Confidence 78888888888877654 34566667777777 78999999999887644 677888888888887
Q ss_pred --CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----c
Q 005265 471 --GYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAG---LVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGR----A 541 (705)
Q Consensus 471 --g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 541 (705)
+++++|+.+|++..+.| +...+..+...+...| ++++|.++|+...+. .+...+..|..+|.. .
T Consensus 308 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~ 380 (490)
T 2xm6_A 308 VAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVK 380 (490)
T ss_dssp BCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSC
T ss_pred CcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCC
Confidence 89999999999998864 3456666666666656 889999999988653 467788889999988 8
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHh
Q 005265 542 GCLDEAKTLIEAMPMQPDAVIWGSLLAACKV----HRNIMLGEYVAKKLLEIEPS---NSGPYVLLSNMYAE 606 (705)
Q Consensus 542 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 606 (705)
+++++|.+.|++.-...+...+..|...|.. .+++++|...|+++.+.+|+ ++.....++.++..
T Consensus 381 ~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 381 KDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999987333467888888888887 89999999999999999854 66666777766554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-15 Score=161.51 Aligned_cols=407 Identities=10% Similarity=0.051 Sum_probs=266.2
Q ss_pred ChhhHHHHHHHhhcCCChHHHHHHHhccCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 005265 185 DVYMGSALIDMYGKCGRVSCARRVFDGMRE--R-NIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSA 261 (705)
Q Consensus 185 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 261 (705)
+...|..++. +.+.|+++.|..+|+++.+ | +...|..++..+.+.|++++|..+|+++... .|+...|...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 4556666665 3556677777777766654 2 3345666677777777777777777777653 2555555544432
Q ss_pred H-HccCChHHHHH----HHHHHHHcCCCC-CChhHHHHHHHHHHh---------cCChHHHHHHHhhCCCCCcccHHHHH
Q 005265 262 C-ASLAAFKEGLQ----IHARLMRCEKLR-NDLVLGNALVDMYAK---------CGKLNEARCVFDRMPIRNVVSETSMV 326 (705)
Q Consensus 262 ~-~~~~~~~~a~~----~~~~~~~~~~~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~li 326 (705)
. ...|+.+.|.+ +|+.++..-|.. ++...|...+....+ .|+++.|..+|++...........+.
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 2 23355544443 566655542233 345566666665554 67788888888776542111111111
Q ss_pred HHHHh---cCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHh------hhCC---CCcch--------h
Q 005265 327 SGYAK---ASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLL------KRES---VCPTH--------Y 386 (705)
Q Consensus 327 ~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g---~~p~~--------~ 386 (705)
..|.. ......+..++. ...+++..|..+++.. .+.. +.|+. .
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHHhhchhHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 11111 000001111110 1234456666666542 2221 23331 2
Q ss_pred hHHHHHHHHhh----cccH----HHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHh-------cCCHH-------H
Q 005265 387 TFGNLLNACAN----LADL----QLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMK-------CGSVE-------D 444 (705)
Q Consensus 387 t~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~ 444 (705)
.|...+..... .++. +.+..+++.++... +.+..+|..++..+.+ .|+++ +
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 33333322211 1222 36677888888765 4678889988888876 79987 9
Q ss_pred HHHHHHccCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhccCcHHHHHHHHHHh
Q 005265 445 GCRIFETMVE---R-DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH--VTMIGVLCACSHAGLVEEGRKYFSSM 518 (705)
Q Consensus 445 A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (705)
|..+|++..+ | +...|..++..+.+.|++++|..+|+++++ +.|+. ..|...+..+.+.|++++|+++|+..
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999998764 3 678899999999999999999999999999 56764 47888888888999999999999988
Q ss_pred HHhcCCCCC-hhHHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 519 SKEHGLAPL-KDHYTCMVDL-LGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 519 ~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
.+. .|. ...|...+.. +...|+.++|..+|++. ...| +...|..++..+...|+.++|..+|+++++..|.++
T Consensus 383 l~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 383 RED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred Hhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 753 343 3334333322 34689999999999987 3344 578999999999999999999999999999877665
Q ss_pred c----hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 595 G----PYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 595 ~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
. .|...+......|+.+.+..+.+++.+.
T Consensus 460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 460 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4 6778888888999999999999998753
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-17 Score=162.65 Aligned_cols=184 Identities=16% Similarity=0.232 Sum_probs=50.8
Q ss_pred hcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHH
Q 005265 197 GKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHA 276 (705)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 276 (705)
.+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999996664 9999999999999999999999653 677899999999999999999999888
Q ss_pred HHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHH
Q 005265 277 RLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNAL 356 (705)
Q Consensus 277 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 356 (705)
...+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|..+
T Consensus 86 ~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 86 MARKK---ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp --------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred HHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 77774 4557888999999999999999887775 355567777777777777777777777766 367777
Q ss_pred HHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHH
Q 005265 357 IAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGR 405 (705)
Q Consensus 357 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 405 (705)
+.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|.
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHH
Confidence 77777777777777777766 24566666666666666666663
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.9e-16 Score=154.25 Aligned_cols=222 Identities=14% Similarity=0.140 Sum_probs=69.9
Q ss_pred hcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHH
Q 005265 97 KWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHAL 176 (705)
Q Consensus 97 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 176 (705)
+.|++++|.+.++++..|+ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4566677777777775443 6777777777777777777777542 4666777777777777888888777776
Q ss_pred HHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHH
Q 005265 177 LSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLA 256 (705)
Q Consensus 177 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 256 (705)
.++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 6664 34567778888888888888887777753 66678888888888888888888888766 2466
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHH
Q 005265 257 SVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVK 336 (705)
Q Consensus 257 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 336 (705)
.+..++.+.|+++.|.+.+.++ .++.+|..++.+|...|+++.|......
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~----------------------- 202 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH----------------------- 202 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----------------------
T ss_pred HHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----------------------
Confidence 6666666666666666666654 2455666666666666666666533322
Q ss_pred HHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhC
Q 005265 337 SARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRE 379 (705)
Q Consensus 337 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 379 (705)
+. ..+.....++..|.+.|++++|+.+++.....
T Consensus 203 --------L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 203 --------IV-VHADELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp --------TT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred --------HH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 11 22222334667777777777777777776643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-14 Score=153.56 Aligned_cols=352 Identities=12% Similarity=0.007 Sum_probs=266.4
Q ss_pred CCcchHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCC
Q 005265 215 RNIVSWNSLITCYEQ----NGPASDALEVFVRMMASGIEPDEVTLASVVSACAS----LAAFKEGLQIHARLMRCEKLRN 286 (705)
Q Consensus 215 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 286 (705)
.+..++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .+++++|...|.+..+.+
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence 455556666666665 566666666666666543 34445555555555 566666666666665543
Q ss_pred ChhHHHHHHHHHHh----cCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCC-CCeehHHHHHHHHH
Q 005265 287 DLVLGNALVDMYAK----CGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLE-RNVVSWNALIAGYT 361 (705)
Q Consensus 287 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~ 361 (705)
+...+..|...|.. .+++++|. ..|++..+ .++..+..+...|.
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~-------------------------------~~~~~a~~~~~~~a~~~Lg~~y~ 158 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESV-------------------------------KWFRLAAEQGRDSGQQSMGDAYF 158 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHH-------------------------------HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHH-------------------------------HHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444445555555 45555555 55554433 35567777888888
Q ss_pred H----cCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhh----cccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHH
Q 005265 362 Q----NGENEEALGLFRLLKRESVCPTHYTFGNLLNACAN----LADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLI 433 (705)
Q Consensus 362 ~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li 433 (705)
. .+++++|+..|++..+.| +...+..+...+.. .++.++|...+....+.+ +...+..+.
T Consensus 159 ~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg 226 (490)
T 2xm6_A 159 EGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---------DELGQLHLA 226 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---------CHHHHHHHH
Confidence 7 789999999999998865 56677777777777 789999999999998864 456777888
Q ss_pred HHHHh----cCCHHHHHHHHHccCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 005265 434 DMYMK----CGSVEDGCRIFETMVE-RDWVSWNAMIVGCAQ----NGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSH 504 (705)
Q Consensus 434 ~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 504 (705)
.+|.. .+++++|..+|++..+ .+..++..+...|.. .++.++|+++|++..+.| +...+..+...+..
T Consensus 227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDK 303 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc
Confidence 88886 8899999999998764 467788888888888 899999999999998764 44566667777776
Q ss_pred c-----CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 005265 505 A-----GLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAG---CLDEAKTLIEAMPMQPDAVIWGSLLAACKV---- 572 (705)
Q Consensus 505 ~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~---- 572 (705)
. +++++|...|+...+. .+...+..+..+|.+.| +.++|.+.|++.-...+...+..+...|..
T Consensus 304 ~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~ 379 (490)
T 2xm6_A 304 GAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGV 379 (490)
T ss_dssp CBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred CCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 6 8999999999988653 24567888888888867 889999999988334678889999999888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 005265 573 HRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAE----LGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 573 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 625 (705)
.+++++|...++++.+.. ++.++..|+.+|.+ .+++++|.+.+++..+.+.
T Consensus 380 ~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 380 KKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 899999999999999864 56789999999999 8999999999999998764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.1e-17 Score=164.07 Aligned_cols=259 Identities=9% Similarity=-0.044 Sum_probs=207.4
Q ss_pred CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhH
Q 005265 349 NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFV 428 (705)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 428 (705)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++.|...+..+.+.. +.+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~ 135 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-------PNNLKA 135 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCHHH
Confidence 44568888888888888888888888888754 3456678888888888888888888888888876 456788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCC-------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---h
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVERD-------------WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD---H 492 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~ 492 (705)
+..+..+|...|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++.+. .|+ .
T Consensus 136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 213 (365)
T 4eqf_A 136 LMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDP 213 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCH
Confidence 8889999999999999999998875321 123344578888999999999999999984 454 6
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005265 493 VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAAC 570 (705)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 570 (705)
.++..+...+...|++++|...|+.+.+.. +.+...|..+..+|.+.|++++|+..|+++ ...| +..+|..+...|
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 788899999999999999999999987641 334889999999999999999999999987 3445 578899999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCC------------CCchHHHHHHHHHhcCChhHHHHHHHH
Q 005265 571 KVHRNIMLGEYVAKKLLEIEPS------------NSGPYVLLSNMYAELGRWGEVVRVRKL 619 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 619 (705)
...|++++|...+++++++.|+ +...|..++.++...|+.+.+.++.++
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999999999776 356789999999999999998887754
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-14 Score=156.78 Aligned_cols=216 Identities=11% Similarity=0.031 Sum_probs=168.9
Q ss_pred HHHHHHHHHhhhCCCCcchhhHHHHHHHHhh-------cccHH-------HHHHHHHHHHHhCCCCCCCCCCcHhHHHHH
Q 005265 367 EEALGLFRLLKRESVCPTHYTFGNLLNACAN-------LADLQ-------LGRQAHTHVVKHGLRFLSGEESDIFVGNSL 432 (705)
Q Consensus 367 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 432 (705)
.++..+|++.+... +.+...|......+.+ .|+++ .|..+++..++.-. +.+..++..+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~------p~~~~l~~~~ 327 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL------KKNMLLYFAY 327 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC------SSCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC------cccHHHHHHH
Confidence 36778888887652 2345566666666654 68876 88999998886322 4678999999
Q ss_pred HHHHHhcCCHHHHHHHHHccCC--C-Ch-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHH-HhccC
Q 005265 433 IDMYMKCGSVEDGCRIFETMVE--R-DW-VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCA-CSHAG 506 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~-~~~~g 506 (705)
+..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|+.++|.++|++..+. .|+. ..+...... +...|
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcC
Confidence 9999999999999999998763 3 33 58999999999999999999999999984 4442 233322222 33589
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 005265 507 LVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM----PMQPD--AVIWGSLLAACKVHRNIMLGE 580 (705)
Q Consensus 507 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~ 580 (705)
++++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+.
T Consensus 406 ~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp CHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred ChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999988753 224788999999999999999999999987 22332 558888898899999999999
Q ss_pred HHHHHHHhhCCCC
Q 005265 581 YVAKKLLEIEPSN 593 (705)
Q Consensus 581 ~~~~~~~~~~p~~ 593 (705)
.+++++.+..|++
T Consensus 484 ~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 484 KVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHTHHH
T ss_pred HHHHHHHHHCchh
Confidence 9999999998853
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-16 Score=160.60 Aligned_cols=255 Identities=13% Similarity=0.043 Sum_probs=206.2
Q ss_pred HHHcCChHHHHH-HHHHhhhCCC-Cc--chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHH
Q 005265 360 YTQNGENEEALG-LFRLLKRESV-CP--THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDM 435 (705)
Q Consensus 360 ~~~~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 435 (705)
+...|++++|+. .|++...... .| +...+..+...+...|+++.|...+..+.+.. +.+..++..+..+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~ 107 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTT 107 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 445688999998 8887664321 11 35668888899999999999999999999876 4678899999999
Q ss_pred HHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh-HHH--------------
Q 005265 436 YMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVT-MIG-------------- 497 (705)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~-------------- 497 (705)
|...|++++|...|+++. ..+..+|..+...|...|++++|++.|+++... .|+... +..
T Consensus 108 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 1fch_A 108 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSK 185 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------
T ss_pred HHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHH
Confidence 999999999999999875 347889999999999999999999999999984 454432 211
Q ss_pred -HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005265 498 -VLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHR 574 (705)
Q Consensus 498 -ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 574 (705)
.+..+...|++++|...++.+.+...-.++..++..+..+|.+.|++++|...++++ ...| +..+|..+...+...|
T Consensus 186 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 186 RILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC
Confidence 233444899999999999999765322225788999999999999999999999987 3344 5789999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 575 NIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 575 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
++++|...+++++++.|+++.++..++.+|.+.|++++|...++++.+.
T Consensus 266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-15 Score=146.64 Aligned_cols=271 Identities=9% Similarity=-0.040 Sum_probs=208.0
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCe----ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHH
Q 005265 328 GYAKASSVKSARLMFTKMLERNV----VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQL 403 (705)
Q Consensus 328 ~~~~~~~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 403 (705)
-....|++..|+..+++....++ .....+..+|...|+++.|+..++. .-.|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34455666666677666544332 2334567788888888888876644 135666778888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 005265 404 GRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKM 483 (705)
Q Consensus 404 a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 483 (705)
|.+.++.+...+.. +.+...+..+...|...|++++|++.+++ ..+...+..++..|.+.|++++|.+.|+++
T Consensus 84 A~~~l~~ll~~~~~-----P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 84 IVAELDREMSRSVD-----VTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHSCCC-----CSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888876531 34667788888999999999999999998 568889999999999999999999999999
Q ss_pred HHCCCCCChhhH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-
Q 005265 484 LLCGEKPDHVTM---IGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP- 558 (705)
Q Consensus 484 ~~~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 558 (705)
.+. .|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++ ...|
T Consensus 157 ~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 157 QDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred Hhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 984 5765322 12233444569999999999999875 3456889999999999999999999999997 4455
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHH
Q 005265 559 DAVIWGSLLAACKVHRNIML-GEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVR 617 (705)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 617 (705)
+..++..++..+...|+.++ +.++++++++++|+++.+ .+...+.+.++++..-|
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 67789999999999999876 678999999999998753 34566666666665544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-15 Score=158.80 Aligned_cols=369 Identities=13% Similarity=0.018 Sum_probs=213.8
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHC-----C--CCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcC-----
Q 005265 216 NIVSWNSLITCYEQNGPASDALEVFVRMMAS-----G--IEP-DEVTLASVVSACASLAAFKEGLQIHARLMRCE----- 282 (705)
Q Consensus 216 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----- 282 (705)
.+..||.|...+...|++++|++.|++..+. + ..| ...+|..+...+...|++++|...++++.+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456888888888999999999998887541 1 122 34567777777778888888887777766521
Q ss_pred CCC-CChhHHHHHHHHHHhc--CChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHH
Q 005265 283 KLR-NDLVLGNALVDMYAKC--GKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAG 359 (705)
Q Consensus 283 ~~~-~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 359 (705)
... ....++..+..++.+. +++++|...|++..+- .+.++..+..+...
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~----------------------------~p~~~~~~~~~~~~ 181 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK----------------------------KPKNPEFTSGLAIA 181 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----------------------------STTCHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh----------------------------CCCCHHHHHHHHHH
Confidence 011 1233444444444433 3456666555433210 11223333333332
Q ss_pred ---HHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhh----cccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHH
Q 005265 360 ---YTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACAN----LADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSL 432 (705)
Q Consensus 360 ---~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 432 (705)
+...++.++|+..+++..+.. +.+...+..+...+.. .++.+.|.+.+....... +.+..++..+
T Consensus 182 ~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-------~~~~~~~~~l 253 (472)
T 4g1t_A 182 SYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-------PGVTDVLRSA 253 (472)
T ss_dssp HHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-------SSCHHHHHHH
T ss_pred HHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-------ccHHHHHHHH
Confidence 234456666666666665542 1223333333333322 345566666666666655 3556666667
Q ss_pred HHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCC
Q 005265 433 IDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQ-------------------NGYGTEALGLFKKMLLCGEKP 490 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p 490 (705)
...|...|++++|...|++..+ .+..+|..+...|.. .+..+.|...|++..+ ..|
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~ 331 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--AND 331 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCT
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCC
Confidence 7777777777777777766542 244455555444432 2345778888888887 455
Q ss_pred Ch-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh----HHHHHHH-HHHhcCChHHHHHHHHhC-CCCCCHHHH
Q 005265 491 DH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKD----HYTCMVD-LLGRAGCLDEAKTLIEAM-PMQPDAVIW 563 (705)
Q Consensus 491 ~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 563 (705)
+. .++..+...+...|++++|...|++..+. .|+.. .+..+.. .+...|++++|+..|++. .+.|+...+
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~ 408 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK 408 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH
Confidence 54 57888889999999999999999988653 34322 2333333 245779999999999887 566765443
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEE
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWI 634 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 634 (705)
... ...+.+++++.++.+|+++.+|..|+.+|...|++++|++.+++..+.+-......+|+
T Consensus 409 ~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 409 EKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 322 34556788888999999999999999999999999999999999988665433344443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.2e-16 Score=156.94 Aligned_cols=231 Identities=13% Similarity=0.029 Sum_probs=197.5
Q ss_pred chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHH
Q 005265 384 THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSW 460 (705)
Q Consensus 384 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 460 (705)
+...+..+...+.+.|+++.|...+..+.+.. +.+..++..+..+|.+.|++++|...|+++. ..+..+|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 136 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKAL 136 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 44568888899999999999999999999887 4678999999999999999999999999876 3468899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hH----------HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh
Q 005265 461 NAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV-TM----------IGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKD 529 (705)
Q Consensus 461 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~----------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 529 (705)
..+...|...|++++|+..|+++.+ ..|+.. .+ ..+...+...|++++|..+++++.+...-.++..
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 214 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD 214 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH
Confidence 9999999999999999999999998 445432 22 3347788999999999999999987632222588
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 005265 530 HYTCMVDLLGRAGCLDEAKTLIEAM-PMQ-PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAEL 607 (705)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 607 (705)
.+..+...|.+.|++++|++.|+++ ... .+..+|..+...+...|++++|...+++++++.|+++.++..++.+|.+.
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence 9999999999999999999999987 333 46889999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 005265 608 GRWGEVVRVRKLMRKR 623 (705)
Q Consensus 608 g~~~~A~~~~~~~~~~ 623 (705)
|++++|.+.++++.+.
T Consensus 295 g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 295 GAYREAVSNFLTALSL 310 (365)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999864
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-15 Score=148.89 Aligned_cols=246 Identities=11% Similarity=0.035 Sum_probs=203.3
Q ss_pred HHHHHHcCChHHHHHHHHHhhhCCCCcch--hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHH
Q 005265 357 IAGYTQNGENEEALGLFRLLKRESVCPTH--YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLID 434 (705)
Q Consensus 357 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 434 (705)
|.-....|++.+|+..++..... .|+. .....+..++...|+++.|...++. . - +|+...+..+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~------~~~~~a~~~la~ 73 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-S------APELQAVRMFAE 73 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-S------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-C------ChhHHHHHHHHH
Confidence 44566789999999999876553 3443 3556678899999999999876543 1 2 678889999999
Q ss_pred HHHhcCCHHHHHHHHHccC----CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHH
Q 005265 435 MYMKCGSVEDGCRIFETMV----ER-DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVE 509 (705)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 509 (705)
.+...|+.++|++.++++. .| +...+..+...+...|++++|++.+++ ..+...+..+...+.+.|+++
T Consensus 74 ~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 74 YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp HHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999864 24 567788888999999999999999987 356678888999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005265 510 EGRKYFSSMSKEHGLAPLKDH---YTCMVDLLGRAGCLDEAKTLIEAM--PMQPDAVIWGSLLAACKVHRNIMLGEYVAK 584 (705)
Q Consensus 510 ~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 584 (705)
+|.+.++.+.+. .|+... ...++..+...|++++|..+|+++ ..+++...|+.+..++.+.|++++|+..++
T Consensus 148 ~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 224 (291)
T 3mkr_A 148 LARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQ 224 (291)
T ss_dssp HHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999765 466321 223445556679999999999998 234578899999999999999999999999
Q ss_pred HHHhhCCCCCchHHHHHHHHHhcCChhH-HHHHHHHHHhC
Q 005265 585 KLLEIEPSNSGPYVLLSNMYAELGRWGE-VVRVRKLMRKR 623 (705)
Q Consensus 585 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 623 (705)
++++.+|+++.++..++.++...|++++ +.++++++.+.
T Consensus 225 ~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 225 EALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999986 57899888753
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-15 Score=153.33 Aligned_cols=260 Identities=10% Similarity=-0.074 Sum_probs=202.1
Q ss_pred CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhH
Q 005265 349 NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFV 428 (705)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 428 (705)
+...|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...+..+.+.. +.+..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~ 91 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------PKDIAV 91 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------cCCHHH
Confidence 33456666777777777777877777777653 2345566667777777788888888887777765 356677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCC
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVER---DWVSWNAM--------------IV-GCAQNGYGTEALGLFKKMLLCGEKP 490 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p 490 (705)
+..+...|...|++++|.+.|+++... +...+..+ .. .+...|++++|...++++.+. .|
T Consensus 92 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~ 169 (327)
T 3cv0_A 92 HAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NP 169 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--ST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CC
Confidence 777888888888888888888776522 22333332 22 367788999999999999884 34
Q ss_pred -ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005265 491 -DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLL 567 (705)
Q Consensus 491 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 567 (705)
+...+..+...+...|++++|...++.+.+. .+.+...+..+..+|.+.|++++|.+.++++ ...| +..+|..+.
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 247 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4568888889999999999999999988764 1234788999999999999999999999987 3334 678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCC------------CCchHHHHHHHHHhcCChhHHHHHHHHH
Q 005265 568 AACKVHRNIMLGEYVAKKLLEIEPS------------NSGPYVLLSNMYAELGRWGEVVRVRKLM 620 (705)
Q Consensus 568 ~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 620 (705)
..+...|++++|.+.++++++..|+ +...+..++.++.+.|++++|..++++.
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999999999998 6788999999999999999999998654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=5e-14 Score=149.22 Aligned_cols=377 Identities=10% Similarity=-0.012 Sum_probs=181.9
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHhccC-----------C-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-C
Q 005265 187 YMGSALIDMYGKCGRVSCARRVFDGMR-----------E-RNIVSWNSLITCYEQNGPASDALEVFVRMMAS-----G-I 248 (705)
Q Consensus 187 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~ 248 (705)
..||.|...|...|+.++|++.|++.. . ....+|+.+..+|...|++++|...+++.... + .
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 344444445555555555544444321 1 12234555555555566666665555554331 0 1
Q ss_pred CC-CHhHHHHHHHHHHc--cCChHHHHHHHHHHHHcCCCCCChhHHHHHHHH---HHhcCChHHHHHHHhhCC---CCCc
Q 005265 249 EP-DEVTLASVVSACAS--LAAFKEGLQIHARLMRCEKLRNDLVLGNALVDM---YAKCGKLNEARCVFDRMP---IRNV 319 (705)
Q Consensus 249 ~p-~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~---~~~~ 319 (705)
.+ ...++.....++.. .+++++|...|+++++.. |.+...+..+... +...++.++|++.|++.. ..+.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 11 12333333333332 235666666666666643 2333444443333 233455555555544332 1222
Q ss_pred ccHHHHHHHHH----hcCCHHHHHHHHHhcC---CCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcc-hhhHHHH
Q 005265 320 VSETSMVSGYA----KASSVKSARLMFTKML---ERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPT-HYTFGNL 391 (705)
Q Consensus 320 ~~~~~li~~~~----~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 391 (705)
..+..+...+. ..++.++|.+.+++.. ..+...+..+...|...|++++|+..|++..+. .|+ ..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHH
Confidence 23333322222 2234455556665542 234556667777777777777777777777654 233 2333333
Q ss_pred HHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHH
Q 005265 392 LNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCA 468 (705)
Q Consensus 392 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 468 (705)
..++...+.... ... ...........+..+.|...|++.. ..+..+|..+...|.
T Consensus 288 g~~y~~~~~~~~---------~~~-------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 288 GCCYRAKVFQVM---------NLR-------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHH---------HC-------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhh---------hHH-------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Confidence 333221111000 000 0000011111233567777777664 346678899999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChh--hHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChH
Q 005265 469 QNGYGTEALGLFKKMLLCGEKPDHV--TMIGVLC-ACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLD 545 (705)
Q Consensus 469 ~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 545 (705)
..|++++|++.|++.++....|... .+..+.. .....|+.++|+..|++..+ +.|+........ .
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~ 413 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------D 413 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------H
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------H
Confidence 9999999999999999854333221 2222222 34578999999999998764 566643332222 2
Q ss_pred HHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 005265 546 EAKTLIEAM-PM-QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLS 601 (705)
Q Consensus 546 ~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 601 (705)
.+.++++.. .. +.+..+|..+...+...|++++|.+.|++++++.|.++.+..-+|
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 333344333 22 346778999999999999999999999999999998887665544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.9e-17 Score=173.05 Aligned_cols=146 Identities=12% Similarity=0.098 Sum_probs=123.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHhcCC-------CCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 005265 86 FTWNSIITGLLKWGFIDDASRLFASMP-------ERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSAL 158 (705)
Q Consensus 86 ~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 158 (705)
.+||+||.+||+.|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 589999999999999999999997753 5899999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCc-HHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC-----CCcchHHHHHHHHHhcC
Q 005265 159 SACAGSVDF-KMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE-----RNIVSWNSLITCYEQNG 231 (705)
Q Consensus 159 ~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g 231 (705)
.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.+++..+.- +.+.+...|.+.|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 78999999999999999999999999877776555555555444432 12344555666666655
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-14 Score=135.14 Aligned_cols=194 Identities=14% Similarity=0.044 Sum_probs=160.0
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGV 498 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l 498 (705)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.++ ..|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 56778889999999999999999999998753 3678899999999999999999999999999 56765 578888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 005265 499 LCACSHA-----------GLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIWGS 565 (705)
Q Consensus 499 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 565 (705)
..++... |++++|+..++...+. .|+ ...+..+..+|...|++++|+..|++. ....+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8889999 9999999999988754 565 788999999999999999999999987 22278889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
+...+...|++++|...++++++++|+++..+..++.++...|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999987643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.63 E-value=7.4e-14 Score=139.78 Aligned_cols=229 Identities=14% Similarity=0.032 Sum_probs=195.7
Q ss_pred chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHH
Q 005265 384 THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSW 460 (705)
Q Consensus 384 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 460 (705)
+...+......+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...|+++. ..+..+|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 92 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH 92 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHH
Confidence 44566777888899999999999999999876 4678889999999999999999999999875 3467889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh-HHHH--------------HH-HHhccCcHHHHHHHHHHhHHhcCC
Q 005265 461 NAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVT-MIGV--------------LC-ACSHAGLVEEGRKYFSSMSKEHGL 524 (705)
Q Consensus 461 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~ 524 (705)
..+...|...|++++|.+.++++.+ ..|+... +..+ .. .+...|++++|..+++.+.+..
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-- 168 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWLL--SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-- 168 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--
Confidence 9999999999999999999999998 4555443 3222 22 3788999999999999987652
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005265 525 APLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSN 602 (705)
Q Consensus 525 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 602 (705)
+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|++...+..++.
T Consensus 169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 248 (327)
T 3cv0_A 169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAV 248 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 335888999999999999999999999987 3334 67889999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 005265 603 MYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 603 ~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+|...|++++|.+.++++.+.
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999998764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.9e-16 Score=166.35 Aligned_cols=131 Identities=14% Similarity=0.106 Sum_probs=115.4
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMV-------ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTM 495 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 495 (705)
..-..+||+||++|++.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 4456789999999999999999999997753 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005265 496 IGVLCACSHAGL-VEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 496 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 554 (705)
+++|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.+-++...++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999997 57899999999776 99999999999998887776555555554333
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-13 Score=132.52 Aligned_cols=217 Identities=12% Similarity=0.009 Sum_probs=182.1
Q ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---C-------
Q 005265 387 TFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER---D------- 456 (705)
Q Consensus 387 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~------- 456 (705)
.+..+...+...|+++.|...+..+.+.. .+..++..+..+|...|++++|...|++..+. +
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHH
Confidence 44555566666777777777777766653 34678888999999999999999999987631 2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 005265 457 WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMV 535 (705)
Q Consensus 457 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 535 (705)
...|..+...|...|++++|+..|+++.+ +.|+. ..+...|++++|...++.+.+ ..|+ ...+..+.
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~ 146 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEG 146 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHH
Confidence 57889999999999999999999999998 45663 346667899999999998864 3454 77889999
Q ss_pred HHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHH
Q 005265 536 DLLGRAGCLDEAKTLIEAM-PM-QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEV 613 (705)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 613 (705)
..+.+.|++++|...++++ .. +.+..+|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|
T Consensus 147 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 147 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999988 33 346788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 005265 614 VRVRKLMRKR 623 (705)
Q Consensus 614 ~~~~~~~~~~ 623 (705)
.+.+++..+.
T Consensus 227 ~~~~~~a~~~ 236 (258)
T 3uq3_A 227 LETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998753
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.5e-14 Score=135.54 Aligned_cols=241 Identities=10% Similarity=-0.079 Sum_probs=192.4
Q ss_pred HcCChHHHHHHHHHhhhCCC--C-cchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHh
Q 005265 362 QNGENEEALGLFRLLKRESV--C-PTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMK 438 (705)
Q Consensus 362 ~~g~~~~A~~~~~~m~~~g~--~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 438 (705)
..|++++|+..|+++.+... . .+..++..+...+...|+++.|...+..+.+.. +.+..++..+..+|..
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHH
Confidence 35778889999988887632 1 245677778888888999999999999988876 4678889999999999
Q ss_pred cCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHH
Q 005265 439 CGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYF 515 (705)
Q Consensus 439 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 515 (705)
.|++++|...|+++.+ .+...|..+...|...|++++|...|+++.+ ..|+.......+..+...|++++|...+
T Consensus 90 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999998763 4678899999999999999999999999998 5677665556666667789999999999
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 516 SSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-----AVIWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 516 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
+..... .+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.
T Consensus 168 ~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 168 KQHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 887664 23344444 4777788888999999999887 33332 578888999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCChhHHHHHH
Q 005265 590 EPSNSGPYVLLSNMYAELGRWGEVVRVR 617 (705)
Q Consensus 590 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 617 (705)
+|++.. ..+.++...|++++|.+.+
T Consensus 245 ~p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 NVHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CCTTCH---HHHHHHHHHHHHHHC----
T ss_pred CchhHH---HHHHHHHHHHHHHhhHHHH
Confidence 998754 4477888999999998876
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-13 Score=133.06 Aligned_cols=237 Identities=10% Similarity=-0.031 Sum_probs=195.2
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCc----H
Q 005265 351 VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESD----I 426 (705)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~ 426 (705)
..|..+...+...|++++|+..|++..+.. ++...+..+..++...|+++.|...+..+.+..... .++ .
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~ 79 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM----RADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc----ccchHHHH
Confidence 357778888999999999999999988876 778888888999999999999999999888764310 111 6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhcc
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHA 505 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 505 (705)
.++..+...|...|++++|...|++....+.. ...+...|++++|...++++.. ..|+. ..+..+...+...
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHh
Confidence 88899999999999999999999988642211 2456677889999999999998 55654 5788888899999
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 005265 506 GLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVA 583 (705)
Q Consensus 506 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 583 (705)
|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...++++ ...| +..+|..+...+...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999987642 334888999999999999999999999987 3344 5788999999999999999999999
Q ss_pred HHHHhhC------CCCCchHHHHHH
Q 005265 584 KKLLEIE------PSNSGPYVLLSN 602 (705)
Q Consensus 584 ~~~~~~~------p~~~~~~~~l~~ 602 (705)
++++++. |++...+..+..
T Consensus 231 ~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 231 DAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHhChhhcCCCchHHHHHHHHH
Confidence 9999998 777665555543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-13 Score=140.23 Aligned_cols=205 Identities=7% Similarity=-0.058 Sum_probs=130.5
Q ss_pred cHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhc----CCHHHHHHHHHccCCCChhHHHHHHHH-H--HHcCC
Q 005265 400 DLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKC----GSVEDGCRIFETMVERDWVSWNAMIVG-C--AQNGY 472 (705)
Q Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~ 472 (705)
+.++|...+....+.| +++...+..|..+|... +++++|...|++....+...+..+... | ...++
T Consensus 194 ~~~~A~~~~~~aa~~g-------~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d 266 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRG-------TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGD 266 (452)
T ss_dssp HHHHHHHHHHHHHHTT-------CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCC
T ss_pred cHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Confidence 4444444444444444 24444445555555444 677788888777663366677777666 3 45778
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC-----cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCC
Q 005265 473 GTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAG-----LVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGR----AGC 543 (705)
Q Consensus 473 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 543 (705)
+++|+++|++..+.| +...+..+...|. .| ++++|..+|+... .-+...+..|..+|.. ..+
T Consensus 267 ~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 267 VEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCC
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcC
Confidence 888888888888765 4555555655555 44 8888888888653 3356777777777766 348
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH--hcCChhHHHHHH
Q 005265 544 LDEAKTLIEAMPMQPDAVIWGSLLAACKV----HRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA--ELGRWGEVVRVR 617 (705)
Q Consensus 544 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~ 617 (705)
.++|...|++.-...+......|...|.. ..+.++|...|+++.+..+.. ....+..+.. ..++..+|.++.
T Consensus 338 ~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~ 415 (452)
T 3e4b_A 338 PQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLV 415 (452)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 88899988887323344455556665553 458899999999988876543 2334444432 234666777777
Q ss_pred HHHHh
Q 005265 618 KLMRK 622 (705)
Q Consensus 618 ~~~~~ 622 (705)
++.++
T Consensus 416 ~~~~~ 420 (452)
T 3e4b_A 416 QQELA 420 (452)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.5e-13 Score=130.17 Aligned_cols=175 Identities=11% Similarity=-0.003 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhc
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSH 504 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~ 504 (705)
+..+...|...|++++|...|++.. ..+...|..+...|...|++++|+..|++.++ ..|+. ..+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHH
Confidence 3444444444444444444444432 12334444444444445555555555444444 23332 223333312223
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC---hHHHHHHHHhC----CCCCC------HHHHHHHHHHH
Q 005265 505 AGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGC---LDEAKTLIEAM----PMQPD------AVIWGSLLAAC 570 (705)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~ 570 (705)
.+++++|.+.|+.+.+. .|+ ...+..+..++...|+ +++|...++++ ...|+ ..+|..+...+
T Consensus 155 ~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp TTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 33555555555555432 232 4444445555555554 44454444443 11122 24667777788
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005265 571 KVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELG 608 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 608 (705)
...|++++|.+.++++++++|+++.+...+..+....+
T Consensus 232 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 88999999999999999999999887777766655443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-12 Score=132.81 Aligned_cols=244 Identities=10% Similarity=0.052 Sum_probs=198.1
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhccc-HHHHHHHHHHHHHhCCCCCCCCCCcHhHH
Q 005265 351 VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLAD-LQLGRQAHTHVVKHGLRFLSGEESDIFVG 429 (705)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (705)
..|+.+...+...|++++|+..|++.++.. +-+...|..+..++...|+ +++|...++.+++.. +.+..+|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------P~~~~a~ 169 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------PKNYQVW 169 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-------CCCHHHH
Confidence 467778888889999999999999988753 2245667778888888886 999999999999887 4688899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhc-
Q 005265 430 NSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSH- 504 (705)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~- 504 (705)
..+..++...|++++|+..|+++. ..+...|..+..++...|++++|+..|+++++ +.|+. ..|..+..++..
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999886 34778899999999999999999999999998 56654 578888888888
Q ss_pred cCcHHHH-----HHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-
Q 005265 505 AGLVEEG-----RKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAG--CLDEAKTLIEAMPMQP-DAVIWGSLLAACKVHR- 574 (705)
Q Consensus 505 ~g~~~~a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g- 574 (705)
.|..++| +..++...+ +.|+ ...|..+..+|.+.| ++++|++.++++...| +...+..+...+...|
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhc
Confidence 5665677 477887764 3565 778888899999888 6899999888875455 5677888888887764
Q ss_pred --------CHHHHHHHHHHH-HhhCCCCCchHHHHHHHHHhc
Q 005265 575 --------NIMLGEYVAKKL-LEIEPSNSGPYVLLSNMYAEL 607 (705)
Q Consensus 575 --------~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 607 (705)
..++|.++++++ ++++|.....|..++..+...
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258999999999 899999988888887766543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-12 Score=124.25 Aligned_cols=196 Identities=10% Similarity=-0.046 Sum_probs=173.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHH
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCA 501 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~ 501 (705)
...+..+...|...|++++|...|+++. ..+...|..+...|...|++++|.+.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 5778889999999999999999999875 346788999999999999999999999999984 44 45688888899
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 005265 502 CSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIML 578 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 578 (705)
+...|++++|.++++.+.+ .+..|+ ...+..+..+|.+.|++++|.+.++++ ...| +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998875 234564 778889999999999999999999987 3334 57888999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 579 GEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 579 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
|...++++++..|++...+..++.++...|++++|.+.++++.+..
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999998643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-12 Score=120.23 Aligned_cols=198 Identities=13% Similarity=0.044 Sum_probs=174.0
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGV 498 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l 498 (705)
+.+..++..+...+...|++++|...|+++. ..+...|..+...|...|++++|.+.++++.+. .| +..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 4567888999999999999999999999875 346788999999999999999999999999984 45 45688888
Q ss_pred HHHHhcc-CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005265 499 LCACSHA-GLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHR 574 (705)
Q Consensus 499 l~~~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 574 (705)
...+... |++++|...++.+.+ .+..|+ ...+..+..+|.+.|++++|...++++ ...| +...+..+...+...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence 9999999 999999999999876 234454 778899999999999999999999987 3334 5788899999999999
Q ss_pred CHHHHHHHHHHHHhhCC-CCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 575 NIMLGEYVAKKLLEIEP-SNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 575 ~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
++++|...++++++..| ++...+..++.++...|+.++|..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999999 99898999999999999999999999998753
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-12 Score=134.19 Aligned_cols=342 Identities=10% Similarity=-0.022 Sum_probs=219.7
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCCh---HHHHHHHhhCCCCCcccHHHHHHHHHhcC--
Q 005265 259 VSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKL---NEARCVFDRMPIRNVVSETSMVSGYAKAS-- 333 (705)
Q Consensus 259 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~-- 333 (705)
...+.+.|++++|..+|..+.+.+ +...+..|..+|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 334455566677777776666654 222333455555556666 67777777666555556666666444444
Q ss_pred ---CHHHHHHHHHhcCCC-CeehHHHHHHHHHHcCChH---HHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHH
Q 005265 334 ---SVKSARLMFTKMLER-NVVSWNALIAGYTQNGENE---EALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQ 406 (705)
Q Consensus 334 ---~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 406 (705)
+.++|...|++...+ ++..+..|...|...+..+ ++...+......| +......+...+...+.++.+..
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 667777888777543 4557888888888766543 3455555555444 33445555666666664433333
Q ss_pred HHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcC---CHHHHHHHHHccCCC---ChhHHHHHHHHHHHc----CChHHH
Q 005265 407 AHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCG---SVEDGCRIFETMVER---DWVSWNAMIVGCAQN----GYGTEA 476 (705)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~A 476 (705)
....+.+... ..++..+..|..+|.+.| +.++|++.|++..+. +...+..+...|... +++++|
T Consensus 163 ~a~~~~~~a~------~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 163 DVERICKAAL------NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp HHHHHHHHHT------TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred HHHHHHHHHH------cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 3222222222 234448889999999999 999999999987643 444446777777554 699999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHH-H--hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-----ChHHHH
Q 005265 477 LGLFKKMLLCGEKPDHVTMIGVLCA-C--SHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAG-----CLDEAK 548 (705)
Q Consensus 477 ~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~ 548 (705)
+++|++.. .| +...+..+... + ...+++++|..+|+...+. | +...+..|..+|. .| ++++|.
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 99999987 32 33455555555 3 5689999999999988653 3 6777888888887 55 999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh----cCChhHHHHHHHHH
Q 005265 549 TLIEAMPMQPDAVIWGSLLAACKV----HRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAE----LGRWGEVVRVRKLM 620 (705)
Q Consensus 549 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 620 (705)
+.|++.- ..+...+..|...|.. ..++++|...|+++.+. .++.....|+.+|.. ..+.++|..++++.
T Consensus 308 ~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 308 AHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 9999998 6678888888877765 34999999999998874 456778999999985 46899999999999
Q ss_pred HhCCC
Q 005265 621 RKRGV 625 (705)
Q Consensus 621 ~~~~~ 625 (705)
.+.|.
T Consensus 385 ~~~g~ 389 (452)
T 3e4b_A 385 KAQDT 389 (452)
T ss_dssp HTTCC
T ss_pred HHCCC
Confidence 98775
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-11 Score=120.59 Aligned_cols=222 Identities=11% Similarity=-0.032 Sum_probs=177.4
Q ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHccCC-CChhHH
Q 005265 386 YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMK----CGSVEDGCRIFETMVE-RDWVSW 460 (705)
Q Consensus 386 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~ 460 (705)
.++..+...+...+++++|...+....+. .+...+..+...|.. .+++++|...|++..+ .+..++
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 77 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGC 77 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34444555556666666666666666652 344567778888888 8999999999988764 367788
Q ss_pred HHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 005265 461 NAMIVGCAQ----NGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSH----AGLVEEGRKYFSSMSKEHGLAPLKDHYT 532 (705)
Q Consensus 461 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 532 (705)
..+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|+...+. + +...+.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~ 150 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHH
Confidence 888888988 999999999999998864 66778888888888 89999999999988653 2 566777
Q ss_pred HHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005265 533 CMVDLLGR----AGCLDEAKTLIEAMPMQPDAVIWGSLLAACKV----HRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMY 604 (705)
Q Consensus 533 ~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 604 (705)
.+...|.+ .+++++|.+.|++.-...+...+..+...+.. .+++++|...++++++..| +..+..++.+|
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~ 228 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHH
Confidence 88888888 89999999999887323467788888888888 9999999999999999876 56789999999
Q ss_pred Hh----cCChhHHHHHHHHHHhCCC
Q 005265 605 AE----LGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 605 ~~----~g~~~~A~~~~~~~~~~~~ 625 (705)
.. .|++++|.+.+++..+.+.
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HcCCCcccCHHHHHHHHHHHHHcCC
Confidence 99 9999999999999987664
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-12 Score=119.47 Aligned_cols=194 Identities=15% Similarity=0.012 Sum_probs=132.6
Q ss_pred CCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHh
Q 005265 348 RNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIF 427 (705)
Q Consensus 348 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 427 (705)
++...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++.. +.+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------P~~~~ 74 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-------PRYLG 74 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHH
Confidence 455677788888888899999999988888753 3355677777888888899999999998888876 46777
Q ss_pred HHHHHHHHHHhc-----------CCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 005265 428 VGNSLIDMYMKC-----------GSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV 493 (705)
Q Consensus 428 ~~~~li~~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 493 (705)
.+..+..+|.+. |++++|+..|++..+ .+...|..+...|...|++++|+..|++.++.. .+..
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~ 152 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPE 152 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchH
Confidence 888888888888 777777777776642 255667777777777777777777777777754 5556
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 554 (705)
.+..+..++...|++++|+..|+.+.+. .|+ ...+..+..++.+.|++++|++.|++.
T Consensus 153 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 153 IRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6677777777777777777777766543 343 566666777777777777777766654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-12 Score=130.34 Aligned_cols=222 Identities=9% Similarity=0.085 Sum_probs=191.9
Q ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCC-HHHHHHHHHccCC---CChhHHH
Q 005265 386 YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGS-VEDGCRIFETMVE---RDWVSWN 461 (705)
Q Consensus 386 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~ 461 (705)
..+..+...+...|+++.|...+..+++.. +.+..+|+.+..++...|+ +++|+..|+++.. .+...|.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~ 170 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 170 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 456666777888999999999999999987 4688999999999999997 9999999999863 4778999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHH
Q 005265 462 AMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLG 539 (705)
Q Consensus 462 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 539 (705)
.+...+...|++++|+..|+++++ +.|+. ..|..+..++...|++++|+..++++++. .|+ ...|+.+..+|.
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH
Confidence 999999999999999999999999 66755 58899999999999999999999999764 565 889999999999
Q ss_pred h-cCChHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-
Q 005265 540 R-AGCLDEA-----KTLIEAM-PMQP-DAVIWGSLLAACKVHR--NIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELG- 608 (705)
Q Consensus 540 ~-~g~~~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 608 (705)
+ .|..++| ++.|++. .+.| +...|+.+...+...| ++++|.+.++++ +.+|+++.++..++++|.+.|
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhc
Confidence 9 6665777 4777766 4455 5778999888888888 689999999998 889999999999999999985
Q ss_pred --------ChhHHHHHHHHH
Q 005265 609 --------RWGEVVRVRKLM 620 (705)
Q Consensus 609 --------~~~~A~~~~~~~ 620 (705)
.+++|.++++++
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHH
Confidence 358999999998
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.1e-13 Score=137.48 Aligned_cols=268 Identities=11% Similarity=0.030 Sum_probs=200.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCcch-----hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHh
Q 005265 353 WNALIAGYTQNGENEEALGLFRLLKRESVCPTH-----YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIF 427 (705)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 427 (705)
+..+...+...|++++|+..|++..+.+ |+. ..+..+...+...|+++.|...+..+.+..... ...+....
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~ 127 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM-NDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-cCchHHHH
Confidence 4455667778888888888888887753 322 356677777788888888888887776541100 00023457
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCC---------ChhHHHHHHHHHHHcCC-----------------hHHHHHHHH
Q 005265 428 VGNSLIDMYMKCGSVEDGCRIFETMVER---------DWVSWNAMIVGCAQNGY-----------------GTEALGLFK 481 (705)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 481 (705)
++..+...|...|++++|...|++.... ...+|..+...|...|+ +++|++.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888889999999999999998876421 24478888889999999 999999988
Q ss_pred HHHHC----CCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHH
Q 005265 482 KMLLC----GEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKTLIE 552 (705)
Q Consensus 482 ~m~~~----g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~ 552 (705)
+..+. +-.|.. .++..+...+...|++++|..++++..+...-.++ ...+..+..+|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 87652 112222 36778888899999999999999988654211112 3378888999999999999999998
Q ss_pred hC-CC---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCChhHHHHHHH
Q 005265 553 AM-PM---QP----DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN------SGPYVLLSNMYAELGRWGEVVRVRK 618 (705)
Q Consensus 553 ~~-~~---~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 618 (705)
+. .. .. ...++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 76 11 11 24577888888999999999999999999874432 3378899999999999999999999
Q ss_pred HHHhC
Q 005265 619 LMRKR 623 (705)
Q Consensus 619 ~~~~~ 623 (705)
+..+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98753
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.5e-12 Score=123.81 Aligned_cols=223 Identities=8% Similarity=-0.050 Sum_probs=174.9
Q ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC--CC----hhHHHH
Q 005265 389 GNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE--RD----WVSWNA 462 (705)
Q Consensus 389 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~ 462 (705)
......+...|+++.|...+..+.+.. +.+..++..+..+|...|++++|...|++..+ ++ ..+|..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK-------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT-------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 334445556666666666666666554 34556777888888899999999988887754 22 234889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh
Q 005265 463 MIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGR 540 (705)
Q Consensus 463 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 540 (705)
+...+...|++++|++.|++..+ ..|+. .++..+...+...|++++|...++...+ ..|+ ...+..+...+..
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVD--RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999998 44544 6888999999999999999999997764 4555 7777778734444
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhC---CCC-----CchHHHHHHHHHhc
Q 005265 541 AGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRN---IMLGEYVAKKLLEIE---PSN-----SGPYVLLSNMYAEL 607 (705)
Q Consensus 541 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~ 607 (705)
.+++++|.+.|+++ ...| +...+..+...+...|+ +++|...++++++.. |+. ..+|..++.+|...
T Consensus 155 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 56999999999988 4445 46778888888888888 888999999999874 442 24688899999999
Q ss_pred CChhHHHHHHHHHHhC
Q 005265 608 GRWGEVVRVRKLMRKR 623 (705)
Q Consensus 608 g~~~~A~~~~~~~~~~ 623 (705)
|++++|.+.+++..+.
T Consensus 235 ~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 235 RDKVKADAAWKNILAL 250 (272)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999999864
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-12 Score=124.26 Aligned_cols=191 Identities=11% Similarity=0.064 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHh
Q 005265 428 VGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACS 503 (705)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~ 503 (705)
.+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|+++.+. .| +...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHHHHH
Confidence 333444444444444444444444321 13344444444444555555555555554442 22 2234444444455
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 005265 504 HAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PM-QPDAVIWGSLLAACKVHRNIMLGEY 581 (705)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~ 581 (705)
..|++++|.++++.+.+.. +.+...+..+...|.+.|++++|...++++ .. +.+...+..+...+...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555444321 122444444555555555555555555544 11 1234445555555555555555555
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 582 VAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 582 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.++++++..|++...+..++.+|...|++++|.+.++++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 55555555555555555555555555555555555555544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-12 Score=124.02 Aligned_cols=182 Identities=12% Similarity=0.029 Sum_probs=148.8
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVL 499 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 499 (705)
+.+..++..+...|...|++++|...|+++. ..+...|..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 54 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 132 (243)
T 2q7f_A 54 KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLG 132 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567888889999999999999999998875 3467888899999999999999999999998842 23456788888
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHH
Q 005265 500 CACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PM-QPDAVIWGSLLAACKVHRNIM 577 (705)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~ 577 (705)
..+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++ .. +.+..+|..+...+...|+++
T Consensus 133 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 210 (243)
T 2q7f_A 133 TVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENRE 210 (243)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHH
Confidence 88999999999999999887642 235778888999999999999999999887 22 345778888999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 005265 578 LGEYVAKKLLEIEPSNSGPYVLLSNMYAEL 607 (705)
Q Consensus 578 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 607 (705)
+|...++++++.+|+++..+..++.+....
T Consensus 211 ~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 211 KALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 999999999999999988777766555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-11 Score=118.84 Aligned_cols=200 Identities=10% Similarity=-0.050 Sum_probs=153.2
Q ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHH
Q 005265 389 GNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIV 465 (705)
Q Consensus 389 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 465 (705)
..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|.+.|+++. ..+...|..+..
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 113 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEID-------PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHH
Confidence 333344444444444444444444443 3566778888888888888888888888765 236678888888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh
Q 005265 466 GCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCL 544 (705)
Q Consensus 466 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 544 (705)
.|...|++++|.++|+++.+.+..|+. ..+..+...+...|++++|..+++.+.+.. +.+...+..+..+|.+.|++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCH
Confidence 899999999999999998874455644 577788888899999999999999887642 23477888999999999999
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 005265 545 DEAKTLIEAM-PMQ-PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPY 597 (705)
Q Consensus 545 ~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 597 (705)
++|...++++ ... .+...+..+...+...|++++|.+.++++++..|+++...
T Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 9999999987 334 4667788888889999999999999999999999987643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-12 Score=134.53 Aligned_cols=272 Identities=12% Similarity=0.042 Sum_probs=199.5
Q ss_pred eehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcc---hhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcH
Q 005265 350 VVSWNALIAGYTQNGENEEALGLFRLLKRESVCPT---HYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDI 426 (705)
Q Consensus 350 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 426 (705)
...+......+...|++++|+..|++..+.+.... ...+..+...+...|+++.|...+..+....... ...+...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-GDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-cccHHHH
Confidence 34455666777888888888888888776532111 2456667777788888888888887765432100 0002235
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCCC-----C----hhHHHHHHHHHHHcCC--------------------hHHHH
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVER-----D----WVSWNAMIVGCAQNGY--------------------GTEAL 477 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~--------------------~~~A~ 477 (705)
.++..+...|...|++++|...+++..+. + ..++..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 67788888999999999999988876531 2 3478888888999999 99999
Q ss_pred HHHHHHHHC----CCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHH
Q 005265 478 GLFKKMLLC----GEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAK 548 (705)
Q Consensus 478 ~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~ 548 (705)
..+++..+. +-.|.. .++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 998887652 112222 36778888899999999999999888654222222 347888899999999999999
Q ss_pred HHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCChhHHH
Q 005265 549 TLIEAM-P---MQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN------SGPYVLLSNMYAELGRWGEVV 614 (705)
Q Consensus 549 ~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~ 614 (705)
..+++. . ..++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999876 1 1122 4577788888999999999999999999874433 446889999999999999999
Q ss_pred HHHHHHHh
Q 005265 615 RVRKLMRK 622 (705)
Q Consensus 615 ~~~~~~~~ 622 (705)
+.+++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998865
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-12 Score=114.60 Aligned_cols=163 Identities=13% Similarity=0.056 Sum_probs=133.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 005265 456 DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTC 533 (705)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 533 (705)
+...|..+...|...|++++|++.|++.++ +.|+. .++..+..++...|++++|...+...... .| +...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 456677788888888888888888888887 45654 47777778888888888888888877654 33 3667777
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChh
Q 005265 534 MVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWG 611 (705)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 611 (705)
+...+...+++++|.+.+++. ...| +...+..+...+...|++++|++.++++++++|+++.++..++.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 788888888898888888876 3334 57788888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 005265 612 EVVRVRKLMRKR 623 (705)
Q Consensus 612 ~A~~~~~~~~~~ 623 (705)
+|.+.+++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999998764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.8e-13 Score=139.14 Aligned_cols=208 Identities=9% Similarity=-0.017 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCH-HHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHH
Q 005265 401 LQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSV-EDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEA 476 (705)
Q Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 476 (705)
++.+...+....... +.+...+..+...|...|++ ++|++.|++.. ..+...|..+...|...|++++|
T Consensus 84 ~~~al~~l~~~~~~~-------~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-------QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp HHHHHHHHHHHHTTC-------CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhccC-------chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 455555565544433 46788999999999999999 99999999875 33678999999999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhcc---------CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc-----
Q 005265 477 LGLFKKMLLCGEKPDHVTMIGVLCACSHA---------GLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRA----- 541 (705)
Q Consensus 477 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~----- 541 (705)
++.|++.++ +.|+...+..+...+... |++++|...++++.+. .|+ ...|..+..+|...
T Consensus 157 ~~~~~~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 157 HTCFSGALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHHHHHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhc
Confidence 999999999 568888889999999999 9999999999998764 455 88899999999999
Q ss_pred ---CChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHH
Q 005265 542 ---GCLDEAKTLIEAM-PMQP----DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEV 613 (705)
Q Consensus 542 ---g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 613 (705)
|++++|++.|++. ...| +...|..+..++...|++++|.+.|+++++++|++..++..++.++...|++++|
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 4455 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 005265 614 VRVRKLM 620 (705)
Q Consensus 614 ~~~~~~~ 620 (705)
.+.+.++
T Consensus 312 i~~~~~~ 318 (474)
T 4abn_A 312 LESKGKT 318 (474)
T ss_dssp HHHTTTC
T ss_pred HHHhccc
Confidence 9765443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-12 Score=129.01 Aligned_cols=268 Identities=12% Similarity=0.046 Sum_probs=196.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCcc-----hhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHh
Q 005265 353 WNALIAGYTQNGENEEALGLFRLLKRESVCPT-----HYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIF 427 (705)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 427 (705)
+......+...|++++|+..|+++.+.. |+ ...+..+...+...|+++.|...+..+.+..... ...+....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~ 84 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-GDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-cccHHHHH
Confidence 3445566777888888888888877653 32 2456667777777888888888877765431100 00023356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHH
Q 005265 428 VGNSLIDMYMKCGSVEDGCRIFETMVE-----RD----WVSWNAMIVGCAQNGY--------------------GTEALG 478 (705)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 478 (705)
++..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 778888899999999999998887642 12 3377888888999999 899999
Q ss_pred HHHHHHHC----CCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHH
Q 005265 479 LFKKMLLC----GEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKT 549 (705)
Q Consensus 479 ~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 549 (705)
.+++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 98887652 11222 236777888889999999999999887643211122 3478888999999999999999
Q ss_pred HHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCChhHHHH
Q 005265 550 LIEAM-P---MQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN------SGPYVLLSNMYAELGRWGEVVR 615 (705)
Q Consensus 550 ~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 615 (705)
.+++. . ..++ ..++..+...+...|++++|...++++++..|.. ...+..++.+|.+.|++++|.+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99876 1 1122 4577788888999999999999999999875433 3368899999999999999999
Q ss_pred HHHHHHhC
Q 005265 616 VRKLMRKR 623 (705)
Q Consensus 616 ~~~~~~~~ 623 (705)
.+++..+.
T Consensus 325 ~~~~a~~~ 332 (338)
T 3ro2_A 325 FAEKHLEI 332 (338)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998864
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-11 Score=114.86 Aligned_cols=205 Identities=12% Similarity=-0.002 Sum_probs=159.2
Q ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHH
Q 005265 386 YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNA 462 (705)
Q Consensus 386 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 462 (705)
..+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|.+.|+++. ..+...|..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence 344555555666666666666666666554 3567778888888888888888888888765 336778888
Q ss_pred HHHHHHHc-CChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHH
Q 005265 463 MIVGCAQN-GYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLG 539 (705)
Q Consensus 463 li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 539 (705)
+...+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++.+.+. .|+ ...+..+..+|.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKM 158 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHH
Confidence 88889999 999999999999888444454 357788888899999999999999988754 344 778889999999
Q ss_pred hcCChHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 005265 540 RAGCLDEAKTLIEAM-PMQ--PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLL 600 (705)
Q Consensus 540 ~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 600 (705)
+.|++++|.+.++++ ... .+...+..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999999999999887 223 4566777777778999999999999999999999987755443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-11 Score=117.54 Aligned_cols=227 Identities=9% Similarity=-0.107 Sum_probs=183.2
Q ss_pred CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhh----cccHHHHHHHHHHHHHhCCCCCCCCCC
Q 005265 349 NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACAN----LADLQLGRQAHTHVVKHGLRFLSGEES 424 (705)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (705)
++.++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 44566777778888888888888888887732 34566667777777 888888888888887753
Q ss_pred cHhHHHHHHHHHHh----cCCHHHHHHHHHccCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhH
Q 005265 425 DIFVGNSLIDMYMK----CGSVEDGCRIFETMVE-RDWVSWNAMIVGCAQ----NGYGTEALGLFKKMLLCGEKPDHVTM 495 (705)
Q Consensus 425 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~ 495 (705)
+...+..+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~ 149 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGC 149 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHH
Confidence 46677788888888 8999999999988764 477788889999998 999999999999999865 45567
Q ss_pred HHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHH
Q 005265 496 IGVLCACSH----AGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGR----AGCLDEAKTLIEAMPMQPDAVIWGSLL 567 (705)
Q Consensus 496 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~ 567 (705)
..+...+.. .+++++|...|+...+. .+...+..+..+|.+ .+++++|.+.|++.-...+...+..+.
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 225 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLG 225 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 777777777 89999999999988654 246778888999999 999999999999872123477788888
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhhCCCCC
Q 005265 568 AACKV----HRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 568 ~~~~~----~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
..+.. .+++++|.+.++++++..|++.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 88888 8999999999999999988653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-11 Score=119.20 Aligned_cols=242 Identities=11% Similarity=-0.017 Sum_probs=164.0
Q ss_pred cCChhHHHHHHHHHHHCCCCC---CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHH
Q 005265 230 NGPASDALEVFVRMMASGIEP---DEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNE 306 (705)
Q Consensus 230 ~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 306 (705)
.|++++|+..|+++.+..... +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHHH
Confidence 466777777777777653211 34456666777777788888888887777763 4556777777777777777777
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchh
Q 005265 307 ARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHY 386 (705)
Q Consensus 307 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 386 (705)
|...|++.. . ..+.+...|..+...|...|++++|+..|+++.+. .|+..
T Consensus 96 A~~~~~~al---------------------------~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 145 (275)
T 1xnf_A 96 AYEAFDSVL---------------------------E-LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDP 145 (275)
T ss_dssp HHHHHHHHH---------------------------H-HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHH---------------------------h-cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCh
Confidence 775554221 1 12235667888888888899999999999888874 35554
Q ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCC-------hhH
Q 005265 387 TFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERD-------WVS 459 (705)
Q Consensus 387 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~ 459 (705)
.....+..+...|+++.|...+........ ++...+. ++..+...++.++|...++.....+ ...
T Consensus 146 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (275)
T 1xnf_A 146 FRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-------KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSET 217 (275)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-------CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-------cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHH
Confidence 555555566777888999998887777653 3444443 6777777888888888888876542 466
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHH
Q 005265 460 WNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYF 515 (705)
Q Consensus 460 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 515 (705)
|..+...|...|++++|...|++..+ ..|+... ....++...|++++|++.+
T Consensus 218 ~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~--~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 218 NFYLGKYYLSLGDLDSATALFKLAVA--NNVHNFV--EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTTCH--HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--CCchhHH--HHHHHHHHHHHHHhhHHHH
Confidence 77788888888888888888888887 4564322 2234556667777776654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-09 Score=118.07 Aligned_cols=439 Identities=10% Similarity=0.019 Sum_probs=278.2
Q ss_pred hHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCC---hHHHHHH
Q 005265 132 FSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGR---VSCARRV 208 (705)
Q Consensus 132 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~ 208 (705)
..+.+..|++....++ -|..+|..++..+.+.+.++.+..+++.++.. ++.....|...+..-.+.|+ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 4445555666655543 47888888888888888888888888888877 45566777777877777787 8888888
Q ss_pred HhccCC-----CCcchHHHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CCCH-hHHHHHHHHHH---------
Q 005265 209 FDGMRE-----RNIVSWNSLITCYEQNGPA--------SDALEVFVRMMA-SGI-EPDE-VTLASVVSACA--------- 263 (705)
Q Consensus 209 ~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~--------- 263 (705)
|++... |++..|...+....+.++. +.+.++|+..+. .|. .|+. ..|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 888653 6677777777766665543 233466666554 465 5543 45555554332
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 005265 264 SLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFT 343 (705)
Q Consensus 264 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 343 (705)
..++++.+..+|..++... ...-..+|......-...+. ..+.+++.+ ....++.|...+.
T Consensus 206 eq~~~~~~R~iy~raL~iP-~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~ 266 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQP-MDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQ 266 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSC-CSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHH
Confidence 1234566777777777421 11112333322221111111 011111111 0011222222222
Q ss_pred h-------cCC--------------C--C------eehHHHHHHHHHHcC-------ChHHHHHHHHHhhhCCCCcchhh
Q 005265 344 K-------MLE--------------R--N------VVSWNALIAGYTQNG-------ENEEALGLFRLLKRESVCPTHYT 387 (705)
Q Consensus 344 ~-------~~~--------------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t 387 (705)
. +.. | + ...|...+.---..+ ..+.+..+|++.+..- +-+...
T Consensus 267 e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~l 345 (679)
T 4e6h_A 267 DWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEI 345 (679)
T ss_dssp HHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHH
T ss_pred HHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHH
Confidence 2 100 0 0 123444443322222 1234556777776542 335556
Q ss_pred HHHHHHHHhhcccHHHHH-HHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC------------
Q 005265 388 FGNLLNACANLADLQLGR-QAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE------------ 454 (705)
Q Consensus 388 ~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------ 454 (705)
|.....-+...|+.+.|. .++...+... +.+...+-.++....+.|+++.|.++|+++..
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~-------P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQCI-------PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 666666677778888886 9999988765 45777788889999999999999999988753
Q ss_pred -C------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHhc-cCcHHHHHHHHHHhH
Q 005265 455 -R------------DWVSWNAMIVGCAQNGYGTEALGLFKKMLLC-GEKPDHVTMIGVLCACSH-AGLVEEGRKYFSSMS 519 (705)
Q Consensus 455 -~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~ 519 (705)
| ....|...+....+.|+.+.|..+|.+.++. +. +....|...+..-.+ .++++.|..+|+...
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~L 497 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGL 497 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2 1236888888888889999999999999885 21 122233322222223 355899999999998
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 520 KEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP----DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 520 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
+.++ .+...+...++.....|+.+.|..+|++. ...| ....|...+..-..+|+.+.+.++.+++.+..|++.
T Consensus 498 k~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 498 KYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 8743 34666778888888999999999999997 3233 345888888888999999999999999999999875
Q ss_pred chHHHHHHH
Q 005265 595 GPYVLLSNM 603 (705)
Q Consensus 595 ~~~~~l~~~ 603 (705)
. ...+++-
T Consensus 576 ~-~~~f~~r 583 (679)
T 4e6h_A 576 K-LEEFTNK 583 (679)
T ss_dssp H-HHHHHHH
T ss_pred H-HHHHHHH
Confidence 4 4444333
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-12 Score=131.32 Aligned_cols=297 Identities=13% Similarity=0.007 Sum_probs=207.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCC----eehHHHHHHHHH
Q 005265 286 NDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERN----VVSWNALIAGYT 361 (705)
Q Consensus 286 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~li~~~~ 361 (705)
.....+......+...|++++|...|++.. +. ...+ ...|..+...|.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al---------------------------~~-~~~~~~~~~~~~~~l~~~~~ 58 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAV---------------------------QV-GTEDLKTLSAIYSQLGNAYF 58 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------------HH-CCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHH---------------------------hc-CcccHHHHHHHHHHHHHHHH
Confidence 344455556666777777777776655322 11 1112 235667777788
Q ss_pred HcCChHHHHHHHHHhhhC----CCCc-chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHH
Q 005265 362 QNGENEEALGLFRLLKRE----SVCP-THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMY 436 (705)
Q Consensus 362 ~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 436 (705)
..|++++|+..+++.... +-.| ...++..+...+...|+++.|...+..+.+..... ........++..+...|
T Consensus 59 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 59 YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL-NDKVGEARALYNLGNVY 137 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHH
Confidence 888888888887776432 2122 23456667777788888888888887776542100 00011245788888999
Q ss_pred HhcCC--------------------HHHHHHHHHccCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 005265 437 MKCGS--------------------VEDGCRIFETMVE-----R----DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCG 487 (705)
Q Consensus 437 ~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 487 (705)
...|+ +++|...+++... . ...+|..+...|...|++++|...+++..+..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 99999 9999988876542 1 23478888999999999999999999987631
Q ss_pred C-CCC----hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----
Q 005265 488 E-KPD----HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKTLIEAM---- 554 (705)
Q Consensus 488 ~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 554 (705)
. .++ ..++..+...+...|++++|...++...+...-.++ ..++..+...|.+.|++++|.+.+++.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 1 122 137888888999999999999999987643211122 567888999999999999999999876
Q ss_pred CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC------CCCchHHHHHHHHHhcCChh
Q 005265 555 PMQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEP------SNSGPYVLLSNMYAELGRWG 611 (705)
Q Consensus 555 ~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 611 (705)
+..++ ..++..+...+...|++++|...+++++++.+ ....++..++.++...|+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11122 55778888889999999999999999998732 23456778888888888764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.6e-12 Score=128.89 Aligned_cols=240 Identities=11% Similarity=-0.010 Sum_probs=176.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhC----CC-CcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcH
Q 005265 352 SWNALIAGYTQNGENEEALGLFRLLKRE----SV-CPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDI 426 (705)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 426 (705)
.|..+...|...|++++|+..|++..+. +- ......+..+...+...|+++.|...+..+.+..... ...+...
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~ 166 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL-GDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-hchHHHH
Confidence 5667777777888888888887776543 11 1233456667777788888888888887776542100 0002345
Q ss_pred hHHHHHHHHHHhcCC-----------------HHHHHHHHHccCC-----C----ChhHHHHHHHHHHHcCChHHHHHHH
Q 005265 427 FVGNSLIDMYMKCGS-----------------VEDGCRIFETMVE-----R----DWVSWNAMIVGCAQNGYGTEALGLF 480 (705)
Q Consensus 427 ~~~~~li~~~~~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~ 480 (705)
.++..+...|...|+ +++|.+.+++..+ . ...+|..+...|...|++++|+..+
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 678888999999999 9999988887642 1 2347888899999999999999999
Q ss_pred HHHHHCCCC-CC----hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHH
Q 005265 481 KKMLLCGEK-PD----HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKTLI 551 (705)
Q Consensus 481 ~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 551 (705)
++..+.... ++ ..++..+...+...|++++|...++.......-..+ ...+..+..+|.+.|++++|.+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 998773110 11 126788888999999999999999987654211111 567888999999999999999999
Q ss_pred HhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005265 552 EAM-PM---QPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS 592 (705)
Q Consensus 552 ~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 592 (705)
++. .. .++ ..++..+...+...|++++|...+++++++.+.
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 886 11 112 447778888899999999999999999988664
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=135.07 Aligned_cols=162 Identities=18% Similarity=0.169 Sum_probs=132.3
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 005265 456 DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTC 533 (705)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 533 (705)
+..+|+.|...|.+.|++++|++.|++.++ +.|+. .++..+..++.+.|++++|++.|++..+. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 345677777777777888888888887777 56664 47777778888888888888888877643 565 777888
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChh
Q 005265 534 MVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWG 611 (705)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 611 (705)
+..+|.+.|++++|++.|++. .+.| +...|+.+...+...|++++|++.|+++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888888888888888888876 4455 56788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 005265 612 EVVRVRKLMRK 622 (705)
Q Consensus 612 ~A~~~~~~~~~ 622 (705)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.6e-11 Score=108.78 Aligned_cols=166 Identities=13% Similarity=0.033 Sum_probs=144.8
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHH
Q 005265 424 SDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVL 499 (705)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll 499 (705)
.+..+|..+...|.+.|++++|++.|++.. ..+..+|..+...|...|++++|+..+.+... ..|+. ..+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 467789999999999999999999999876 34778999999999999999999999999988 44544 5677777
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005265 500 CACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNI 576 (705)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 576 (705)
..+...++++.|...+....+. .|+ ...+..+..+|.+.|++++|++.|++. ...| +..+|..+..++...|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 8889999999999999988754 444 788999999999999999999999987 4444 677899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCC
Q 005265 577 MLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 577 ~~a~~~~~~~~~~~p~~~ 594 (705)
++|.+.|+++++++|+++
T Consensus 158 ~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhCCccCH
Confidence 999999999999999764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.8e-11 Score=119.53 Aligned_cols=280 Identities=13% Similarity=-0.014 Sum_probs=147.2
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCC
Q 005265 259 VSACASLAAFKEGLQIHARLMRCEKLRND----LVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASS 334 (705)
Q Consensus 259 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 334 (705)
...+...|++++|...++++++.. +.+ ..++..+...|...|++++|...+++..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al------------------- 70 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL------------------- 70 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------
Confidence 344455666666666666666643 222 2455666677777777777776654321
Q ss_pred HHHHHHHHHhcCCC--CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCC-cc----hhhHHHHHHHHhhccc-------
Q 005265 335 VKSARLMFTKMLER--NVVSWNALIAGYTQNGENEEALGLFRLLKRESVC-PT----HYTFGNLLNACANLAD------- 400 (705)
Q Consensus 335 ~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~------- 400 (705)
.+......+ ...++..+...|...|++++|...+++..+.... ++ ..++..+...+...|+
T Consensus 71 -----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 145 (338)
T 3ro2_A 71 -----TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP 145 (338)
T ss_dssp -----HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSC
T ss_pred -----HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchh
Confidence 222222111 2345667777888888888888888776543110 11 2356666777777777
Q ss_pred -------------HHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHH
Q 005265 401 -------------LQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGC 467 (705)
Q Consensus 401 -------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 467 (705)
++.|...+.......... ...+....++..+...|...|++++|...+++..+..
T Consensus 146 ~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------- 213 (338)
T 3ro2_A 146 QDTGEFPEDVRNALQAAVDLYEENLSLVTAL-GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA----------- 213 (338)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-----------
Confidence 777777666554321000 0001122344555555555555555555555432100
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcC
Q 005265 468 AQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAG 542 (705)
Q Consensus 468 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g 542 (705)
...+..+. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|
T Consensus 214 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (338)
T 3ro2_A 214 ----------------KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 277 (338)
T ss_dssp ----------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc
Confidence 00000000 113444444445555555555555444322110111 345556666666666
Q ss_pred ChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005265 543 CLDEAKTLIEAM-PM---QPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS 592 (705)
Q Consensus 543 ~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 592 (705)
++++|...++++ .. .++ ..++..+...+...|++++|...+++++++.+.
T Consensus 278 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 278 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 666666666654 10 111 346667777788888888888888888877553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-11 Score=123.71 Aligned_cols=230 Identities=8% Similarity=-0.051 Sum_probs=168.6
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC-----C-----ChhHH
Q 005265 391 LLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE-----R-----DWVSW 460 (705)
Q Consensus 391 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~ 460 (705)
....+...|+++.|...+..+.+..... +.......++..+...|...|+++.|...+++..+ + ...++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFV-KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 3345567788888888888887642100 00011346788899999999999999988887642 1 23478
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCh----hhHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC-hhHH
Q 005265 461 NAMIVGCAQNGYGTEALGLFKKMLLCGEK-PDH----VTMIGVLCACSHAGLVEEGRKYFSSMSKEH---GLAPL-KDHY 531 (705)
Q Consensus 461 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~ 531 (705)
+.+...|...|++++|++.|++.++.... ++. .++..+...+...|++++|...+++..+-. +..|. ..++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 88899999999999999999998763111 111 378888889999999999999999886521 22243 6778
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCCchHHHHH
Q 005265 532 TCMVDLLGRAGCLDEAKTLIEAM-PM-----QPD-AVIWGSLLAACKVHRN---IMLGEYVAKKLLEIEPSNSGPYVLLS 601 (705)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~ 601 (705)
..+..+|.+.|++++|.+.+++. .. .|. ...+..+...+...|+ +++|...+++. ...|.....+..++
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la 346 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 89999999999999999999886 11 222 2234556666888888 77777777765 23344455688999
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 005265 602 NMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 602 ~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+|...|++++|.+.+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999875
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.31 E-value=6.8e-09 Score=112.08 Aligned_cols=143 Identities=13% Similarity=0.076 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC---CChhhHHHHHHHHHhcCC---hhHHHHHHh
Q 005265 36 SDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN---KNVFTWNSIITGLLKWGF---IDDASRLFA 109 (705)
Q Consensus 36 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~ 109 (705)
.+-...++..+... +-|...|..++..+.+.+.++.++.+|+.+.. .....|...+..-.+.|. ++.+..+|+
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 33444455555444 45777777777777777777777777777754 244566777777677777 777777777
Q ss_pred cCCC-----CCcccHHHHHHHHHhCCCh--------HHHHHHHHHhHh-CCC-CCC-hhhHHHHHHHhhC---------C
Q 005265 110 SMPE-----RDQCSWNSMVSGFAQHDRF--------SEALGYFVKMHS-ENF-ALS-EYSFGSALSACAG---------S 164 (705)
Q Consensus 110 ~~~~-----~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~g~-~p~-~~~~~~ll~~~~~---------~ 164 (705)
+... |++..|..-+.-..+.++. +...++|+.... .|. .|+ ...|...+..... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 6542 4555666655544443332 223356655443 354 443 3455555544332 1
Q ss_pred CCcHHHHHHHHHHHH
Q 005265 165 VDFKMGTQVHALLSK 179 (705)
Q Consensus 165 ~~~~~a~~~~~~~~~ 179 (705)
++++.+..+|..++.
T Consensus 208 ~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHh
Confidence 234556667766664
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.1e-10 Score=113.44 Aligned_cols=211 Identities=9% Similarity=0.009 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHh-------cCCH-------HHHHHHHHccCC---C-ChhHHHHH
Q 005265 402 QLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMK-------CGSV-------EDGCRIFETMVE---R-DWVSWNAM 463 (705)
Q Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~~---~-~~~~~~~l 463 (705)
+.|..+|+.+++.. +.++.+|..++..+.. .|++ ++|..+|++... | +...|..+
T Consensus 33 ~~a~~~~~~al~~~-------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~ 105 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 105 (308)
T ss_dssp HHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 56667777777665 4678888888887763 5886 899999998754 3 56789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH-
Q 005265 464 IVGCAQNGYGTEALGLFKKMLLCGEKPDHV--TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLG- 539 (705)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~- 539 (705)
+..+...|++++|..+|+++++ +.|+.. .|..+...+.+.|++++|..+|++..+. .| +...|...+....
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~ 180 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYY 180 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998 677653 7888899999999999999999988753 34 3555554444432
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCC-CCchHHHHHHHHHhcCChhHH
Q 005265 540 RAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEI---EPS-NSGPYVLLSNMYAELGRWGEV 613 (705)
Q Consensus 540 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A 613 (705)
..|+.++|.++|+++ ...| +...|..++..+...|++++|..+|+++++. .|+ ....|..++..+.+.|++++|
T Consensus 181 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 379999999999987 3233 6788999999999999999999999999996 453 566788999999999999999
Q ss_pred HHHHHHHHhCC
Q 005265 614 VRVRKLMRKRG 624 (705)
Q Consensus 614 ~~~~~~~~~~~ 624 (705)
..+++++.+..
T Consensus 261 ~~~~~~a~~~~ 271 (308)
T 2ond_A 261 LKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99999988654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=8.7e-10 Score=108.90 Aligned_cols=217 Identities=10% Similarity=0.011 Sum_probs=170.6
Q ss_pred HHHHHHHHHhhhCCCCcchhhHHHHHHHHh-------hcccH-------HHHHHHHHHHHHh-CCCCCCCCCCcHhHHHH
Q 005265 367 EEALGLFRLLKRESVCPTHYTFGNLLNACA-------NLADL-------QLGRQAHTHVVKH-GLRFLSGEESDIFVGNS 431 (705)
Q Consensus 367 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 431 (705)
++|..+|++..... +.+...|......+. ..|++ ++|..+++..++. . +.+...|..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-------p~~~~~~~~ 104 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-------KKNMLLYFA 104 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-------TTCHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-------cccHHHHHH
Confidence 57777888777642 224445555555543 34664 8899999998883 4 467789999
Q ss_pred HHHHHHhcCCHHHHHHHHHccCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHh-cc
Q 005265 432 LIDMYMKCGSVEDGCRIFETMVE--R-DWV-SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACS-HA 505 (705)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~-~~ 505 (705)
++..+.+.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++.++. .|+. ..|........ ..
T Consensus 105 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCS 182 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999998864 3 344 8999999999999999999999999984 3443 34443333322 37
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHH
Q 005265 506 GLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-P---MQP--DAVIWGSLLAACKVHRNIMLG 579 (705)
Q Consensus 506 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~a 579 (705)
|++++|..+|+...+.. +.+...|..++..+.+.|++++|..+|+++ . ..| ....|..++......|+.+.|
T Consensus 183 ~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp CCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999998753 224788999999999999999999999988 2 355 467899999999999999999
Q ss_pred HHHHHHHHhhCCCCCc
Q 005265 580 EYVAKKLLEIEPSNSG 595 (705)
Q Consensus 580 ~~~~~~~~~~~p~~~~ 595 (705)
..+++++++..|++..
T Consensus 261 ~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 261 LKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHcccccc
Confidence 9999999999998654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.7e-11 Score=118.99 Aligned_cols=200 Identities=14% Similarity=0.146 Sum_probs=164.1
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC--------C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-----
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE--------R---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLC----- 486 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 486 (705)
+.+..++..+...|...|++++|..+|+++.+ . ...++..+...|...|++++|...+++.++.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 44567888999999999999999999988754 2 3457888999999999999999999998874
Q ss_pred -CCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-
Q 005265 487 -GEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEH-----GLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PM- 556 (705)
Q Consensus 487 -g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~- 556 (705)
+-.|. ..++..+...+...|++++|..+++.+.+.. +-.|. ...+..+...|...|++++|++.++++ ..
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22333 3578888899999999999999999887643 22343 667888999999999999999999876 11
Q ss_pred -------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---------------------------------------
Q 005265 557 -------QP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEI--------------------------------------- 589 (705)
Q Consensus 557 -------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------------------------------- 589 (705)
.| ...++..+...+...|++++|...++++++.
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 23 2447788888899999999999999999874
Q ss_pred ----------CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 590 ----------EPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 590 ----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.|....++..++.+|.+.|++++|.+.+++..+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355566788999999999999999999998875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-09 Score=108.22 Aligned_cols=265 Identities=13% Similarity=0.031 Sum_probs=187.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhCCCCcchh----hHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCC--cHhH
Q 005265 355 ALIAGYTQNGENEEALGLFRLLKRESVCPTHY----TFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEES--DIFV 428 (705)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~ 428 (705)
.....+...|++++|...+++........+.. .+..+...+...|+++.|...+.......... + .+ ...+
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~-~~~~~~~~ 95 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--D-VWHYALWS 95 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--T-CHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--C-cHHHHHHH
Confidence 34455667888888888888877653222221 34555566777889999988888776543210 0 11 1234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCC----------C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--Chh
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVE----------R-DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEK--P--DHV 493 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~ 493 (705)
+..+...+...|++++|...+++... + ....+..+...+...|++++|...+++....... | ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 56778889999999999999887642 1 1235667788899999999999999998874221 1 123
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhCC-CCCC-----HHH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYT-----CMVDLLGRAGCLDEAKTLIEAMP-MQPD-----AVI 562 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~ 562 (705)
++..+...+...|++++|...++.......-......+. ..+..+...|++++|...+++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 577778888999999999999998865422111111222 23355789999999999999882 2221 335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 563 WGSLLAACKVHRNIMLGEYVAKKLLEIEPSN------SGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 563 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+..+...+...|++++|...++++++..+.. ...+..++.++...|++++|...+++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6677788999999999999999998763321 13567789999999999999999998865
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-11 Score=121.03 Aligned_cols=242 Identities=12% Similarity=0.088 Sum_probs=166.5
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHhhhC-------CCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCC-CCC
Q 005265 351 VSWNALIAGYTQNGENEEALGLFRLLKRE-------SVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFL-SGE 422 (705)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~ 422 (705)
.+|..+...+...|++++|+.+|+++.+. ........+..+...+...|+++.|...+..+.+...... ...
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45777788888888888888888887763 2233445677777888888999999888888876520000 000
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC-----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-----
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER-----------DWVSWNAMIVGCAQNGYGTEALGLFKKMLLC----- 486 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 486 (705)
+....++..+...|...|++++|...|++..+. ....+..+...+...|++++|+++|+++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 345678889999999999999999999877521 3456888899999999999999999998874
Q ss_pred -CCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCCCC-h------hHHHHHHHHHHhcCChHHHHHHH
Q 005265 487 -GEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEH------GLAPL-K------DHYTCMVDLLGRAGCLDEAKTLI 551 (705)
Q Consensus 487 -g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p~-~------~~~~~l~~~~~~~g~~~~A~~~~ 551 (705)
+..|+. .++..+...+...|++++|..+++.+.+.. ...+. . ..+..+...+...+.+.+|...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 224443 478888889999999999999999887531 11121 1 12222333444555666666666
Q ss_pred HhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005265 552 EAMP-MQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS 592 (705)
Q Consensus 552 ~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 592 (705)
+... ..| +..++..+...|...|++++|.+.+++++++.|.
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 6663 233 4567888999999999999999999999998775
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.4e-11 Score=110.28 Aligned_cols=188 Identities=14% Similarity=0.008 Sum_probs=121.8
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE----RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIG 497 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ 497 (705)
+.++..+......+...|++++|...|++..+ ++...|..+..++...|++++|++.|++.++ ..|+. ..+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHH
Confidence 34556777777777777777777777776542 5566666677777777777777777777776 45554 46666
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-h-------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHH
Q 005265 498 VLCACSHAGLVEEGRKYFSSMSKEHGLAPL-K-------DHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD---AVIWGS 565 (705)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ 565 (705)
+..++...|++++|...++...+. .|+ . ..|..+...+.+.|++++|++.|+++ ...|+ ...|..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 777777777777777777777654 233 3 34666666677777777777777765 44554 335555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+...+.. .+...++++..+.+.+...|. .......|.+++|...+++..+
T Consensus 159 l~~~~~~-----~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 159 LGVLFYN-----NGADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHH-----HHHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 5555543 334455666666555543332 2334445667999999988875
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-10 Score=122.53 Aligned_cols=177 Identities=12% Similarity=-0.012 Sum_probs=156.0
Q ss_pred HHHHHHHHHccC---CCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHH
Q 005265 442 VEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYG-TEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFS 516 (705)
Q Consensus 442 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 516 (705)
++++...++... ..+...|..+...|...|++ ++|++.|++.++ ..|+ ...+..+..++...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666543 33778899999999999999 999999999998 5666 4689999999999999999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhc---------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCHH
Q 005265 517 SMSKEHGLAPLKDHYTCMVDLLGRA---------GCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVH--------RNIM 577 (705)
Q Consensus 517 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------g~~~ 577 (705)
.+. .+.|+...+..+..+|... |++++|++.|+++ ...| +...|..+..++... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 886 4568888999999999999 9999999999987 4444 578899999999888 9999
Q ss_pred HHHHHHHHHHhhCC---CCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 578 LGEYVAKKLLEIEP---SNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 578 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+|...|+++++++| +++..|..++.+|...|++++|.+.+++..+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999999999864
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.6e-10 Score=107.16 Aligned_cols=152 Identities=13% Similarity=0.027 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 005265 456 DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCM 534 (705)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 534 (705)
|+..|......+...|++++|+..|++.++....++...+..+..++...|++++|+..++...+ ..|+ ...+..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHH
Confidence 44555555666666666666666666666543224444555555566666666666666665543 2343 5556666
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCchHHHHHHH
Q 005265 535 VDLLGRAGCLDEAKTLIEAM-PMQP-DA-------VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS--NSGPYVLLSNM 603 (705)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 603 (705)
..+|.+.|++++|++.+++. ...| +. ..|..+...+...|++++|...++++++++|+ ++.++..++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 66666666666666666655 2223 22 33555555556666666666666666666666 55666666666
Q ss_pred HHhcCCh
Q 005265 604 YAELGRW 610 (705)
Q Consensus 604 ~~~~g~~ 610 (705)
|...|+.
T Consensus 163 ~~~~~~~ 169 (228)
T 4i17_A 163 FYNNGAD 169 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-10 Score=102.90 Aligned_cols=161 Identities=14% Similarity=0.005 Sum_probs=100.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCAC 502 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 502 (705)
...+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+. .|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~----------- 74 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APD----------- 74 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC-----------
Confidence 34455555566666666666666665543 23444555555555555555555555555442 221
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 005265 503 SHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-P-MQPDAVIWGSLLAACKVHRNIMLGE 580 (705)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~ 580 (705)
+...+..+...|...|++++|.+.++++ . .+.+...+..+...+...|++++|.
T Consensus 75 ------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 130 (186)
T 3as5_A 75 ------------------------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAI 130 (186)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------------------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHH
Confidence 2344445555555555555555555554 1 1235566777777777888888888
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 581 YVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 581 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
..++++++..|+++..+..++.++...|++++|.+.+++..+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 131 DSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 8888888888888788888888888888888888888877653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-09 Score=111.15 Aligned_cols=235 Identities=11% Similarity=0.020 Sum_probs=138.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhCCC-Ccc----hhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhH
Q 005265 354 NALIAGYTQNGENEEALGLFRLLKRESV-CPT----HYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFV 428 (705)
Q Consensus 354 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 428 (705)
......+...|++++|+..|++..+... .++ ..++..+...+...|+++.|...+....+..............+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445567789999999999998875421 122 34677777888899999999999888775422100000112456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCChhhH
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVE-----RD----WVSWNAMIVGCAQNGYGTEALGLFKKMLLC----GEKPDHVTM 495 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~ 495 (705)
++.+..+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|++.|++..+. +.+....++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 67777888888888888887776542 11 235666677777777777777777776651 111123456
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCC--CC-hhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHH
Q 005265 496 IGVLCACSHAGLVEEGRKYFSSMSKEHGLA--PL-KDHYTCMVDLLGRAGC---LDEAKTLIEAMPMQPDA-VIWGSLLA 568 (705)
Q Consensus 496 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~ 568 (705)
..+...+...|++++|...+++..+...-. |. ...+..+...|...|+ +.+|+..+++.+..|+. ..+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666666667777777777766665432211 11 3334445555555555 55666666654322222 13333444
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 005265 569 ACKVHRNIMLGEYVAKKLLE 588 (705)
Q Consensus 569 ~~~~~g~~~~a~~~~~~~~~ 588 (705)
.|...|++++|...++++++
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 45555555555555555443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-09 Score=97.77 Aligned_cols=138 Identities=15% Similarity=0.051 Sum_probs=99.2
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVL 499 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 499 (705)
+.+..++..+...|...|++++|...++++. ..+...|..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 117 (186)
T 3as5_A 39 AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLG 117 (186)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHH
Confidence 4577889999999999999999999999875 3467788888888889999999999998888741 22334555555
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005265 500 CACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLG 579 (705)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 579 (705)
..+...|++++|..+++.+.+. . +.+..++..+...+...|++++|
T Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~---~-------------------------------~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 118 VALDNLGRFDEAIDSFKIALGL---R-------------------------------PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---C-------------------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHhc---C-------------------------------ccchHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666666655432 1 22345566666667777777777
Q ss_pred HHHHHHHHhhCCCCCc
Q 005265 580 EYVAKKLLEIEPSNSG 595 (705)
Q Consensus 580 ~~~~~~~~~~~p~~~~ 595 (705)
...++++++..|++..
T Consensus 164 ~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 164 LPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHcCCCchh
Confidence 7777777777666544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-09 Score=111.04 Aligned_cols=235 Identities=8% Similarity=-0.003 Sum_probs=175.6
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhC----CCCc-chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHH
Q 005265 356 LIAGYTQNGENEEALGLFRLLKRE----SVCP-THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGN 430 (705)
Q Consensus 356 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (705)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+....+.........+....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455677788888888888887653 1111 23466777777888888888888888777543210000012346788
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-hhhHH
Q 005265 431 SLIDMYMKCGSVEDGCRIFETMVE-----RD----WVSWNAMIVGCAQNGYGTEALGLFKKMLLC----GEKPD-HVTMI 496 (705)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 496 (705)
.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|++.|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999988752 12 247888999999999999999999998872 33244 35788
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC-hhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 005265 497 GVLCACSHAGLVEEGRKYFSSMSKEHGL--APL-KDHYTCMVDLLGRAGC---LDEAKTLIEAMPMQPD-AVIWGSLLAA 569 (705)
Q Consensus 497 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~ 569 (705)
.+...+...|++++|...+++..+...- .|. ...+..+...|...|+ +++|+.++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8999999999999999999987653211 122 3346778889999999 9999999999865554 3366778888
Q ss_pred HHhcCCHHHHHHHHHHHHhhC
Q 005265 570 CKVHRNIMLGEYVAKKLLEIE 590 (705)
Q Consensus 570 ~~~~g~~~~a~~~~~~~~~~~ 590 (705)
|...|++++|...+++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999873
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=4.1e-08 Score=99.87 Aligned_cols=269 Identities=8% Similarity=-0.078 Sum_probs=165.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh----HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCh----hHHHH
Q 005265 222 SLITCYEQNGPASDALEVFVRMMASGIEPDEV----TLASVVSACASLAAFKEGLQIHARLMRCEKLRNDL----VLGNA 293 (705)
Q Consensus 222 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 293 (705)
.....+...|++++|...+++........+.. .+..+...+...|+++.|...+.+..+...-..+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445667788888888888877643222222 34445556667788888888888776632111121 23556
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCC----CeehHHHHHHHHHHcCChHHH
Q 005265 294 LVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLER----NVVSWNALIAGYTQNGENEEA 369 (705)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A 369 (705)
+...+...|++++|...+++. .++......+ ....+..+...+...|++++|
T Consensus 99 la~~~~~~G~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKA------------------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 154 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH------------------------HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 677788888888888766532 2344333222 123566677888999999999
Q ss_pred HHHHHHhhhCCCC--c--chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHH-----HHHHHHHhcC
Q 005265 370 LGLFRLLKRESVC--P--THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGN-----SLIDMYMKCG 440 (705)
Q Consensus 370 ~~~~~~m~~~g~~--p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g 440 (705)
...+++....... + ...++..+...+...|+++.|...+......... ......+. ..+..+...|
T Consensus 155 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g 229 (373)
T 1hz4_A 155 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN-----GKYHSDWISNANKVRVIYWQMTG 229 (373)
T ss_dssp HHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-----SCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-----cCcchhHHHHHHHHHHHHHHHCC
Confidence 9999987654321 1 2245667777888999999999999988765320 11111111 2334577888
Q ss_pred CHHHHHHHHHccCCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCChh-hHHHHHHHHhccCcH
Q 005265 441 SVEDGCRIFETMVERD-------WVSWNAMIVGCAQNGYGTEALGLFKKMLLC----GEKPDHV-TMIGVLCACSHAGLV 508 (705)
Q Consensus 441 ~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-~~~~ll~~~~~~g~~ 508 (705)
++++|...+++....+ ...+..+...+...|++++|...+++.... |..++.. .+..+..++...|+.
T Consensus 230 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 309 (373)
T 1hz4_A 230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 309 (373)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCH
Confidence 8888888888776432 123556667777778888887777776542 1111111 334444455556666
Q ss_pred HHHHHHHHHhH
Q 005265 509 EEGRKYFSSMS 519 (705)
Q Consensus 509 ~~a~~~~~~~~ 519 (705)
++|...++...
T Consensus 310 ~~A~~~l~~al 320 (373)
T 1hz4_A 310 SDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666555543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.5e-10 Score=122.09 Aligned_cols=164 Identities=15% Similarity=0.141 Sum_probs=147.1
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGV 498 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l 498 (705)
+.+...++.|...|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++.++ +.|+. ..|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 55678999999999999999999999998763 4678999999999999999999999999999 67875 589999
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005265 499 LCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRN 575 (705)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 575 (705)
..++...|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.|++. .+.| +...|..+...+...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 99999999999999999988754 566 889999999999999999999999987 5566 57789999999999999
Q ss_pred HHHHHHHHHHHHhhCC
Q 005265 576 IMLGEYVAKKLLEIEP 591 (705)
Q Consensus 576 ~~~a~~~~~~~~~~~p 591 (705)
+++|.+.+++++++.|
T Consensus 161 ~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVA 176 (723)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh
Confidence 9999999999988644
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-09 Score=102.31 Aligned_cols=204 Identities=9% Similarity=-0.026 Sum_probs=141.7
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE--R-D---WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH---- 492 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---- 492 (705)
+.+...+..+...+.+.|++++|...|+++.. | + ...+..+..+|...|++++|+..|++.++. .|+.
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhH
Confidence 34566677777778888888888888887763 2 3 456777777888888888888888888873 3422
Q ss_pred hhHHHHHHHHhc--------cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH
Q 005265 493 VTMIGVLCACSH--------AGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIW 563 (705)
Q Consensus 493 ~~~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 563 (705)
..+..+..++.. .|++++|...|+.+.+.. |+ ......+.......+.+ ...+
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~ 151 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHH
Confidence 345556666666 788888888888776542 33 22222221111111111 1124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCccCCc
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNS---GPYVLLSNMYAEL----------GRWGEVVRVRKLMRKRGVVKQPG 630 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~ 630 (705)
..+...+...|++++|...++++++..|+++ ..+..++.+|... |++++|...++++.+..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~------ 225 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF------ 225 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC------
Confidence 5677789999999999999999999999854 4788999999877 99999999999988532
Q ss_pred eeEEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHHHH
Q 005265 631 CSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKR 669 (705)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 669 (705)
..+|...+....+..+..++.+
T Consensus 226 -----------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 -----------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -----------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCChHHHHHHHHHHHHHHHHHH
Confidence 2345556777777777777655
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-09 Score=105.27 Aligned_cols=227 Identities=14% Similarity=0.099 Sum_probs=146.8
Q ss_pred hhcccHHHHHHHHHHHHHhCCCCCC-CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC----------C-ChhHHHHH
Q 005265 396 ANLADLQLGRQAHTHVVKHGLRFLS-GEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE----------R-DWVSWNAM 463 (705)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l 463 (705)
...|+++.|...+++..+.-....+ ..+....++..+...|...|++++|...|+++.. + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888877753210000 0022356777888888888998888888877642 1 34567888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC------CCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCCC-hhH
Q 005265 464 IVGCAQNGYGTEALGLFKKMLLC------GEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEH-----GLAPL-KDH 530 (705)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~ 530 (705)
...|...|++++|++.|++..+. .-.|+ ..++..+...+...|++++|..+++++.+.. +-.|. ...
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888888999998888888763 11233 3467778888888888888888888876531 11232 567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHhhCCCC
Q 005265 531 YTCMVDLLGRAGCLDEAKTLIEAMP----------MQPD-AVIWGSLLAACKVHRN------IMLGEYVAKKLLEIEPSN 593 (705)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~ 593 (705)
+..+..+|.+.|++++|...++++- ..+. ...|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7788888888888888888887651 1222 2233333333333222 222222222222234555
Q ss_pred CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 594 SGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 594 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
...+..++.+|...|++++|.+++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56788999999999999999999998875
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.2e-08 Score=99.97 Aligned_cols=238 Identities=10% Similarity=-0.051 Sum_probs=162.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-----ChhHH
Q 005265 222 SLITCYEQNGPASDALEVFVRMMASGI-EPD----EVTLASVVSACASLAAFKEGLQIHARLMRCEKLRN-----DLVLG 291 (705)
Q Consensus 222 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~ 291 (705)
.....+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+.++++...-.+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344456778888888888888765311 122 33566677777888888888888888776421111 13466
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCC--CeehHHHHHHHHHHcCChHHH
Q 005265 292 NALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLER--NVVSWNALIAGYTQNGENEEA 369 (705)
Q Consensus 292 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A 369 (705)
+.+...|...|++++|...|++. .+++.....+ ...+++.+...|...|++++|
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAA------------------------LELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH------------------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 67778888888888888666532 2444333222 234677888899999999999
Q ss_pred HHHHHHhhhC----CCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCC---H
Q 005265 370 LGLFRLLKRE----SVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGS---V 442 (705)
Q Consensus 370 ~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~ 442 (705)
+..|++..+. +.+....++..+...+.+.|+++.|...+....+..... +.+.....+..+...|...|+ +
T Consensus 242 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~l~~ly~~~~~~~~~ 319 (378)
T 3q15_A 242 VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR--SHKFYKELFLFLQAVYKETVDERKI 319 (378)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT--CCSCHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999988761 222335677888888999999999999999988764311 012334456667777777887 8
Q ss_pred HHHHHHHHccCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005265 443 EDGCRIFETMVER--DWVSWNAMIVGCAQNGYGTEALGLFKKMLL 485 (705)
Q Consensus 443 ~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 485 (705)
.+|+..+++.... ....+..+...|...|++++|...|++..+
T Consensus 320 ~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 320 HDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888775432 223556677788888888888888887765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-09 Score=104.46 Aligned_cols=166 Identities=10% Similarity=-0.057 Sum_probs=95.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCCC-----C----hhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC----
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMVER-----D----WVSWNAMIVGCAQN-GYGTEALGLFKKMLLCGEKPD---- 491 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~---- 491 (705)
..+++.+..+|.+.|++++|+..|++..+- + ..+|+.+...|... |++++|+..|++.++. .|+
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~ 154 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCCh
Confidence 345666666666666666666666655321 1 23566667777775 7777777777776652 221
Q ss_pred ---hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-
Q 005265 492 ---HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLK-----DHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAV- 561 (705)
Q Consensus 492 ---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~- 561 (705)
..++..+...+...|++++|+..|+...+...-.+.. ..|..+..++...|++++|...|++. .+.|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2346666667777777777777777665431111111 14556666677777777777777766 3344321
Q ss_pred -----HHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCC
Q 005265 562 -----IWGSLLAACK--VHRNIMLGEYVAKKLLEIEPSN 593 (705)
Q Consensus 562 -----~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~ 593 (705)
.+..++.++. ..+++++|...|+++.+++|..
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2333444443 3455667777776666666644
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.9e-09 Score=99.68 Aligned_cols=167 Identities=13% Similarity=0.063 Sum_probs=118.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCC--C----ChhHHHHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCC
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMVE--R----DWVSWNAMIVGCAQ--------NGYGTEALGLFKKMLLCGEKPD 491 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~ 491 (705)
...+..+..+|.+.|++++|...|++..+ | ....+..+..++.. .|++++|+..|+++++ ..|+
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~ 129 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPN 129 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcC
Confidence 67888899999999999999999998863 2 23467778888888 9999999999999998 4566
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHH
Q 005265 492 HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD----AVIWGSL 566 (705)
Q Consensus 492 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l 566 (705)
..... .+...+..+... -...+..+...|.+.|++++|+..|+++ ...|+ ...+..+
T Consensus 130 ~~~~~-------------~a~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 191 (261)
T 3qky_A 130 HELVD-------------DATQKIRELRAK-----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGA 191 (261)
T ss_dssp CTTHH-------------HHHHHHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred chhHH-------------HHHHHHHHHHHH-----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 53211 111111111110 0123556778888999999999998887 22333 4466777
Q ss_pred HHHHHhc----------CCHHHHHHHHHHHHhhCCCCCc---hHHHHHHHHHhcCChhH
Q 005265 567 LAACKVH----------RNIMLGEYVAKKLLEIEPSNSG---PYVLLSNMYAELGRWGE 612 (705)
Q Consensus 567 ~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~ 612 (705)
..++... |++++|...++++++..|+++. +...+..++...|++++
T Consensus 192 ~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 192 MRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 7777655 8999999999999999999864 34455555555555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=2e-09 Score=105.35 Aligned_cols=187 Identities=6% Similarity=-0.042 Sum_probs=136.6
Q ss_pred HHHHHhcCCHHHHHHHHHccCCC-----C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-------hhhHH
Q 005265 433 IDMYMKCGSVEDGCRIFETMVER-----D----WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-------HVTMI 496 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~ 496 (705)
...|...|++++|...|.+...- + ..+|+.+...|...|++++|+..|++.++. .|+ ..++.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~~~~g~~~~~a~~~~ 121 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--FTHRGQFRRGANFKF 121 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHcCCHHHHHHHHH
Confidence 45677889999999888876421 1 458899999999999999999999998873 221 24678
Q ss_pred HHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---H-----HH
Q 005265 497 GVLCACSHA-GLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD---A-----VI 562 (705)
Q Consensus 497 ~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~ 562 (705)
.+...+... |++++|+..|++..+...-..+ ..++..+...|.+.|++++|+..|++. ...|+ . ..
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 888889986 9999999999988754211111 356888899999999999999999987 22222 1 15
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch-----HHHHHHHHH--hcCChhHHHHHHHHHH
Q 005265 563 WGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP-----YVLLSNMYA--ELGRWGEVVRVRKLMR 621 (705)
Q Consensus 563 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~ 621 (705)
|..+..++...|++++|...++++++++|+.... +..++..+. ..+++++|++.++++.
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 6777788889999999999999999999876543 344556554 4567888888775543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.8e-10 Score=96.70 Aligned_cols=138 Identities=8% Similarity=-0.036 Sum_probs=91.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCh
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCL 544 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 544 (705)
+...|++++|+..+++... ..|+. ..+..+...|...|++++|++.|++..+. .|+ ...|..+..+|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCch
Confidence 3344555666666655544 23332 34455566666666666666666666533 343 66667777777777777
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005265 545 DEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYV-AKKLLEIEPSNSGPYVLLSNMYAELGR 609 (705)
Q Consensus 545 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 609 (705)
++|+..|++. .+.| +..+|..+...+...|++++|.+. ++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777665 3445 466777888888888888765554 588889999998888888888888775
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-08 Score=94.67 Aligned_cols=174 Identities=10% Similarity=-0.024 Sum_probs=121.5
Q ss_pred HHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005265 445 GCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSK 520 (705)
Q Consensus 445 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (705)
|+..|++... ++..++..+..++...|++++|++++.+.+..|-.++ ...+..++..+.+.|+++.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666766542 3455556777788888888888888888776543233 34677777888888888888888888854
Q ss_pred hcCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-
Q 005265 521 EHGLAP-----LKDHYTCMVDL--LGRAG--CLDEAKTLIEAM-PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEI- 589 (705)
Q Consensus 521 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 589 (705)
. .| +..+...|..+ ....| +..+|..+|+++ ...|+..+-..++.++.+.|++++|++.++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 55 24444444444 33334 888888888888 33465344444455788888888888888877765
Q ss_pred ---------CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 590 ---------EPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 590 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+|+++.++..++.+....|+ +|.++++++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 47788888788878777887 788888888753
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-08 Score=94.62 Aligned_cols=181 Identities=12% Similarity=0.022 Sum_probs=122.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh----h
Q 005265 425 DIFVGNSLIDMYMKCGSVEDGCRIFETMVE--RD----WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV----T 494 (705)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~ 494 (705)
+...+..+...+.+.|++++|...|+++.. |+ ...+..+..+|...|++++|+..|+++++ ..|+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHH
Confidence 344555667778888899999888888763 32 24677788888888899999999888887 445543 3
Q ss_pred HHHHHHHHhc------------------cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005265 495 MIGVLCACSH------------------AGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMP 555 (705)
Q Consensus 495 ~~~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 555 (705)
+..+..++.. .|++++|...|+.+.+. .|+ ...+.+...+. ......
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~------- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL------- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH-------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH-------
Confidence 3333334432 45666777777666543 333 22222111100 000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 556 MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS---GPYVLLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 556 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
......+...+...|++++|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00113455668899999999999999999999976 4688999999999999999999999887653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-09 Score=93.84 Aligned_cols=122 Identities=12% Similarity=-0.012 Sum_probs=101.9
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005265 498 VLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHR 574 (705)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 574 (705)
|...+...|++++|+..++... ...|+ ...+-.+..+|.+.|++++|++.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445667889999999998764 34555 556677899999999999999999988 4555 6788999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHH-HHHHHh
Q 005265 575 NIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRV-RKLMRK 622 (705)
Q Consensus 575 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~ 622 (705)
++++|...|+++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 577663
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.1e-08 Score=97.25 Aligned_cols=206 Identities=11% Similarity=0.062 Sum_probs=139.9
Q ss_pred chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCC-CCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC--------
Q 005265 384 THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFL-SGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE-------- 454 (705)
Q Consensus 384 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------- 454 (705)
...++..+...+...|+++.|...+..+.+...... ...+....++..+...|...|++++|...|++...
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 345566667777777777777777777665410000 00034567889999999999999999999988752
Q ss_pred --C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhc--
Q 005265 455 --R-DWVSWNAMIVGCAQNGYGTEALGLFKKMLLC------GEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEH-- 522 (705)
Q Consensus 455 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-- 522 (705)
+ ...+|..+...|...|++++|...|+++.+. +-.|+. .++..+...+...|++++|..+++.+.+..
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 3457888999999999999999999999874 113433 478888899999999999999999887531
Q ss_pred ----CCCCC-hhHHHHHHHHHHhcC------ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 523 ----GLAPL-KDHYTCMVDLLGRAG------CLDEAKTLIEAMP-MQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 523 ----~~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
...+. ...+..+...+...+ .+.++...++... ..| ...++..+...+...|++++|...+++++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11232 334444444444333 3455555555553 223 3457788888899999999999999999875
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-08 Score=98.01 Aligned_cols=176 Identities=10% Similarity=-0.040 Sum_probs=142.4
Q ss_pred HHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005265 442 VEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSK 520 (705)
Q Consensus 442 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (705)
.+.....+......+...+..+...+...|++++|...|++.++ ..|+. ..+..+...+...|++++|...++.+..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 34445555555555667778888889999999999999999998 56765 5788888899999999999999998864
Q ss_pred hcCCCCChhHHHHH-HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--Cc
Q 005265 521 EHGLAPLKDHYTCM-VDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN--SG 595 (705)
Q Consensus 521 ~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~ 595 (705)
. .|+....... ...+.+.|+.++|...+++. ...| +...+..+...+...|++++|...++++++.+|++ ..
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 3 5664433332 33467788888898888876 3344 67789999999999999999999999999999998 78
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 596 PYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
++..++.+|...|+.++|...+++...
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 899999999999999999999887653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2.3e-08 Score=84.41 Aligned_cols=124 Identities=17% Similarity=0.169 Sum_probs=76.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCC
Q 005265 498 VLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-P-MQPDAVIWGSLLAACKVHRN 575 (705)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~ 575 (705)
+...+...|++++|..+++.+.+. . +.+...+..+...+...|++++|...++++ . .+.+...+..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 333444444444444444444332 1 112344444555555555555555555554 1 12345566667777777788
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 576 IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 576 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+++|.+.++++++..|.+...+..++.++...|++++|...++++.+.
T Consensus 85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 888888888888888877777778888888888888888888777653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.4e-09 Score=117.83 Aligned_cols=167 Identities=8% Similarity=-0.113 Sum_probs=143.5
Q ss_pred HhcCCHHHHHHHHHccC-----------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhc
Q 005265 437 MKCGSVEDGCRIFETMV-----------ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSH 504 (705)
Q Consensus 437 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~ 504 (705)
...|++++|++.|++.. ..+...|..+...|...|++++|+..|+++++ ..|+. ..+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 77899999999998876 34667899999999999999999999999998 55654 578888889999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005265 505 AGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEY 581 (705)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 581 (705)
.|++++|.+.|+++.+. .|+ ...+..+..+|.+.|++++ ++.|+++ ...| +...|..+..++...|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999988754 564 7888999999999999999 9999887 4455 57789999999999999999999
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005265 582 VAKKLLEIEPSNSGPYVLLSNMYAELGR 609 (705)
Q Consensus 582 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 609 (705)
.|+++++++|++..++..++.++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999877665
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.93 E-value=8.7e-08 Score=91.55 Aligned_cols=179 Identities=9% Similarity=0.064 Sum_probs=128.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC-----ChhHHHHHHHHHHHcCChHHHHH
Q 005265 404 GRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER-----DWVSWNAMIVGCAQNGYGTEALG 478 (705)
Q Consensus 404 a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~ 478 (705)
+...++.....+ .++......+..++...|++++|++++.+.... +...+-.++..+.+.|+.+.|.+
T Consensus 85 a~~~l~~l~~~~-------~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 85 NIEELENLLKDK-------QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp CCHHHHHTTTTS-------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 445555554443 234445567778888889999999988887432 45567777888999999999999
Q ss_pred HHHHHHHCCCCC-----ChhhHHHHHHHH--hccC--cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 005265 479 LFKKMLLCGEKP-----DHVTMIGVLCAC--SHAG--LVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKT 549 (705)
Q Consensus 479 ~~~~m~~~g~~p-----~~~~~~~ll~~~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 549 (705)
.+++|.+ ..| +..+...+..++ ...| ++.+|..+|+++... .|+...-..+..++.+.|++++|.+
T Consensus 158 ~l~~~~~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 158 IFDNYTN--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHh--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHH
Confidence 9999988 567 355666666553 3334 899999999998644 3553344445558889999999999
Q ss_pred HHHhC-CC----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 005265 550 LIEAM-PM----------QP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP 596 (705)
Q Consensus 550 ~~~~~-~~----------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 596 (705)
.++.+ .. .| |+.++..++......|+ +|.++++++.+..|+++.+
T Consensus 233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 98765 21 24 55566577666666776 8899999999999999753
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.92 E-value=7.8e-09 Score=89.02 Aligned_cols=101 Identities=9% Similarity=0.014 Sum_probs=91.1
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHH
Q 005265 523 GLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVL 599 (705)
Q Consensus 523 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 599 (705)
.+.|+ ...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 55665 667888888999999999999999988 4455 68899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 005265 600 LSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 600 l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
++.+|.+.|++++|.+.+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999864
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.92 E-value=9.3e-09 Score=85.83 Aligned_cols=99 Identities=9% Similarity=0.088 Sum_probs=77.9
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 005265 524 LAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLL 600 (705)
Q Consensus 524 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 600 (705)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4555 556667777888888888888888776 3344 567777888888888888888888888888888888888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 005265 601 SNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 601 ~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888888774
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.91 E-value=9.9e-08 Score=88.07 Aligned_cols=173 Identities=10% Similarity=-0.064 Sum_probs=142.6
Q ss_pred HHHHHHHccC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC----cHHHHHHHHHHh
Q 005265 444 DGCRIFETMV-ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAG----LVEEGRKYFSSM 518 (705)
Q Consensus 444 ~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~ 518 (705)
+|.+.|++.. ..++.++..+...|...+++++|+++|++..+.| +...+..+...|.. + ++++|..+|+..
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4555665554 3478888899999999999999999999999865 55667777777777 6 899999999988
Q ss_pred HHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 005265 519 SKEHGLAPLKDHYTCMVDLLGR----AGCLDEAKTLIEAM-PMQPD---AVIWGSLLAACKV----HRNIMLGEYVAKKL 586 (705)
Q Consensus 519 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~ 586 (705)
.+. -+...+..|..+|.. .+++++|.+.|++. ...|+ +..+..|...|.. .+++++|...|+++
T Consensus 80 ~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 543 357778888888887 88999999999998 44443 7888889888888 78999999999999
Q ss_pred HhhCCCCCchHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 005265 587 LEIEPSNSGPYVLLSNMYAEL-G-----RWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 587 ~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 625 (705)
.+. |.++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 998 66777899999999864 3 89999999999987764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.88 E-value=8.6e-08 Score=80.83 Aligned_cols=132 Identities=17% Similarity=0.171 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 005265 459 SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLL 538 (705)
Q Consensus 459 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 538 (705)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46667777888888888888888887742 2244567777777888888888888888876541 23466777888888
Q ss_pred HhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 005265 539 GRAGCLDEAKTLIEAM-PM-QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN 593 (705)
Q Consensus 539 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 593 (705)
.+.|++++|.+.++++ .. +.+..++..+...+...|++++|...++++++.+|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 8889999998888876 22 3357788888888999999999999999999888863
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.7e-08 Score=87.97 Aligned_cols=76 Identities=8% Similarity=-0.004 Sum_probs=61.5
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 547 AKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN--SGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 547 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
|+..+++. ...| +...+..+...+...|++++|...++++++.+|+. ...+..++.++...|+.++|...+++...
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 45555554 2345 57788888888999999999999999999999875 45889999999999999999999987763
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.81 E-value=6e-08 Score=89.28 Aligned_cols=159 Identities=8% Similarity=0.012 Sum_probs=113.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHH----------------HHHHHHHcCChHHHHHHHHHHHHCCCC
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVER---DWVSWNA----------------MIVGCAQNGYGTEALGLFKKMLLCGEK 489 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~ 489 (705)
.......+...|++++|...|++.... +...|.. +...|...|++++|+..|++.++ ..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~ 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KA 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HC
Confidence 334455677889999999999887643 3445666 78888888888899888888888 55
Q ss_pred CCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC--hHHHHHHHHhCCCCCCH--HHH
Q 005265 490 PDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGC--LDEAKTLIEAMPMQPDA--VIW 563 (705)
Q Consensus 490 p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~~--~~~ 563 (705)
|+. ..+..+..++...|++++|...|+++.+. .|+ ...+..+..+|...|+ .+.+...++... .|++ ..+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~ 160 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYAR 160 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHH
Confidence 654 57778888888888888888888888653 455 7778888887766554 345556666653 3333 344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSN 593 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 593 (705)
.....++...|++++|...|++++++.|+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 445555667788888888888888888864
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=4.2e-08 Score=105.99 Aligned_cols=158 Identities=15% Similarity=0.098 Sum_probs=124.8
Q ss_pred cCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHH
Q 005265 439 CGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKY 514 (705)
Q Consensus 439 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 514 (705)
.|++++|.+.|++..+ .+...|..+...|...|++++|.+.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998864 3677899999999999999999999999998 5665 46888889999999999999999
Q ss_pred HHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 005265 515 FSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVH---RNIMLGEYVAKKLLE 588 (705)
Q Consensus 515 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 588 (705)
+++..+. .|+ ...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|.+.++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998764 454 788999999999999999999999987 3344 577888899999999 999999999999999
Q ss_pred hCCCCCchHHHHH
Q 005265 589 IEPSNSGPYVLLS 601 (705)
Q Consensus 589 ~~p~~~~~~~~l~ 601 (705)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988887776
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.5e-08 Score=86.02 Aligned_cols=101 Identities=10% Similarity=0.002 Sum_probs=88.4
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHH
Q 005265 523 GLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVL 599 (705)
Q Consensus 523 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 599 (705)
.+.|+ ...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...|+++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 44554 667777888899999999999999887 3344 77888899999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 005265 600 LSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 600 l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
++.+|...|++++|.+.+++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999998753
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.1e-08 Score=96.68 Aligned_cols=186 Identities=11% Similarity=-0.008 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCCC-----C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--h
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVER-----D----WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGE---KPD--H 492 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~ 492 (705)
..|+.....|...|++++|...|.+...- + ..+|+.+...|...|++++|+..|++.++.-. .|. .
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35556666777777777777777665421 1 33667777777777778888777777665211 111 2
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----H
Q 005265 493 VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKTLIEAM-PM---QPD----A 560 (705)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~ 560 (705)
.++..+...+.. |++++|+..|++......-..+ ..++..+..+|.+.|++++|+..|++. .+ .++ .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 356666666766 7777777777766543211111 345666777777777777777777765 11 111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH-----HHHHHHHHhcCChhHHHH
Q 005265 561 VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPY-----VLLSNMYAELGRWGEVVR 615 (705)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-----~~l~~~~~~~g~~~~A~~ 615 (705)
..+..+...+...|++++|...+++++ +.|...... ..++..+ ..|+.+.+.+
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 244555555666677777777777777 777665542 2333333 4555554444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.7e-07 Score=101.50 Aligned_cols=187 Identities=12% Similarity=0.071 Sum_probs=147.6
Q ss_pred hhcccHHHHHHHHHHHH--------HhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHH
Q 005265 396 ANLADLQLGRQAHTHVV--------KHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMI 464 (705)
Q Consensus 396 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 464 (705)
...|++++|.+.++.+. +.. +.+...+..+...|...|++++|...|++..+ .+...|..+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg 474 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-------SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRA 474 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 66788888888888877 433 45678889999999999999999999998863 4778999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC
Q 005265 465 VGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAG 542 (705)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 542 (705)
.+|...|++++|++.|++.++ +.|+. ..+..+..++...|++++ .+.|+++.+. .|+ ...|..+..+|.+.|
T Consensus 475 ~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g 548 (681)
T 2pzi_A 475 VAELLTGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEG 548 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcC
Confidence 999999999999999999999 56765 578888999999999999 9999988754 455 788999999999999
Q ss_pred ChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhhCCCCCc
Q 005265 543 CLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRN-----IMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 543 ~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 595 (705)
++++|++.|+++ ...|+ ...|..+..++...++ .+...+..+...++.++++.
T Consensus 549 ~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 549 DRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp CHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred CHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 999999999998 56776 4577777777766555 23344444444445555544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-07 Score=90.54 Aligned_cols=132 Identities=8% Similarity=-0.011 Sum_probs=113.1
Q ss_pred CCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 005265 490 PDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIWGSL 566 (705)
Q Consensus 490 p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 566 (705)
|+. ..+..+...+...|++++|...|+.+.+. .|+ ...+..+..+|.+.|++++|...++++ ...|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 444 56777888889999999999999998764 565 788999999999999999999999998 456776654444
Q ss_pred HHH-HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 567 LAA-CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 567 ~~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
... +...++.+.|...++++++.+|+++..+..++.+|...|++++|...++++.+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 443 7788889999999999999999999999999999999999999999999998643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.74 E-value=6.6e-06 Score=86.17 Aligned_cols=102 Identities=7% Similarity=-0.023 Sum_probs=67.5
Q ss_pred CC-CcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC--CCcchHHHHHHHHHhcCC-hhHHHHH
Q 005265 164 SV-DFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE--RNIVSWNSLITCYEQNGP-ASDALEV 239 (705)
Q Consensus 164 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~ 239 (705)
.| +++.|+.+++.++.. -|. |+++.+..+|++... |++..|...+....+.++ .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 45 377778888777665 222 889999999998775 888888888887777663 4566777
Q ss_pred HHHHHHC-CCCC-CHhHHHHHHHHHH----ccCChHHHHHHHHHHHHc
Q 005265 240 FVRMMAS-GIEP-DEVTLASVVSACA----SLAAFKEGLQIHARLMRC 281 (705)
Q Consensus 240 ~~~m~~~-g~~p-~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~ 281 (705)
|+..... |..| +...|...+..+. ..++.+.+..+|+.++..
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 8877653 5434 4555665555443 235677888888888873
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.7e-06 Score=84.38 Aligned_cols=195 Identities=10% Similarity=-0.027 Sum_probs=138.7
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhH---HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChh----h
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVS---WNAMIVGCAQNGYGTEALGLFKKMLLCG-EKPDHV----T 494 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----~ 494 (705)
.|+..+...+...+.-.- ..++..-...+... +...+..+...|++++|..++++..+.. ..|+.. .
T Consensus 43 ~~~~~~l~~i~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~ 117 (293)
T 3u3w_A 43 YPSMDILQGIAAKLQIPI-----IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQW 117 (293)
T ss_dssp CCCHHHHHHHHHHHTCCT-----HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcCH-----HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHH
Confidence 567766666666554221 12333333333333 3334677889999999999999998742 122221 2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-----C--C-CC-HH
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKTLIEAMP-----M--Q-PD-AV 561 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~--~-p~-~~ 561 (705)
+..+...+...|++++|+..++.+.+...-.++ ..+++.+...|...|++++|...|+++- . . |. ..
T Consensus 118 ~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (293)
T 3u3w_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197 (293)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 334666677888999999999998763222233 3368999999999999999999988761 1 1 22 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN------SGPYVLLSNMYAELGR-WGEVVRVRKLMRK 622 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 622 (705)
++..+...|...|++++|...+++++++.+.. ...|..++.+|.+.|+ +++|.+.+++...
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 77888999999999999999999999874332 4578999999999995 6999999998864
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.9e-07 Score=100.80 Aligned_cols=150 Identities=14% Similarity=0.028 Sum_probs=112.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHH
Q 005265 470 NGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEA 547 (705)
Q Consensus 470 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 547 (705)
.|++++|++.|++..+ ..|+ ...+..+...+...|++++|.+.+++..+ ..|+ ...+..+..+|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4778899999999887 4565 45788888889999999999999998864 4555 77888999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc---CChhHHHHHHHHHHh
Q 005265 548 KTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAEL---GRWGEVVRVRKLMRK 622 (705)
Q Consensus 548 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 622 (705)
.+.+++. ...| +...|..+...+...|++++|.+.++++++.+|++...+..++.++... |++++|.+.+++..+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999887 3344 5778888888999999999999999999999999999999999999999 999999999988876
Q ss_pred CC
Q 005265 623 RG 624 (705)
Q Consensus 623 ~~ 624 (705)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 54
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.72 E-value=2.8e-07 Score=86.02 Aligned_cols=149 Identities=13% Similarity=-0.003 Sum_probs=106.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-Ch---hHHHHHHHHHHH------------------cCChHHHHHHHH
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMVE--R-DW---VSWNAMIVGCAQ------------------NGYGTEALGLFK 481 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~------------------~g~~~~A~~~~~ 481 (705)
...+..+..+|.+.|++++|+..|+++.+ | +. .++..+..++.. .|++++|+..|+
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 120 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS 120 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence 35778889999999999999999999863 3 22 245555555554 578999999999
Q ss_pred HHHHCCCCCChhh-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 005265 482 KMLLCGEKPDHVT-MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD 559 (705)
Q Consensus 482 ~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 559 (705)
++++ ..|+... ...... ...+...+ ......+...|.+.|++++|+..|+++ ...|+
T Consensus 121 ~~l~--~~P~~~~a~~a~~~----------l~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 121 KLVR--GYPNSQYTTDATKR----------LVFLKDRL---------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHT--TCTTCTTHHHHHHH----------HHHHHHHH---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHH--HCcCChhHHHHHHH----------HHHHHHHH---------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence 9998 5677642 211110 00111111 112235677899999999999999987 33443
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 560 ----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 560 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
...+..+..++.+.|+.++|.+.++++....|++..
T Consensus 180 ~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 180 TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 246888888999999999999999999998888754
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.72 E-value=5e-07 Score=88.21 Aligned_cols=166 Identities=11% Similarity=-0.057 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC--
Q 005265 457 WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-----VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGL--APL-- 527 (705)
Q Consensus 457 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~-- 527 (705)
...+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...++...+...- .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345556778889999999999999998885322111 12334555677889999999999987643211 122
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM----PMQPD-----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS------ 592 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------ 592 (705)
..+++.+...|...|++++|...|+++ ...|+ ..++..+...|...|++++|...+++++++.++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 458889999999999999999999876 11222 258888999999999999999999999987432
Q ss_pred CCchHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 005265 593 NSGPYVLLSNMYAELGRWGEV-VRVRKLMRK 622 (705)
Q Consensus 593 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 622 (705)
...+|..++.+|.+.|++++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 145688999999999999999 777887653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-07 Score=84.14 Aligned_cols=157 Identities=10% Similarity=-0.070 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-H
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCA-C 502 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~ 502 (705)
.....+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++... ..|+.......... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHH
Confidence 3455677888999999999999999874 3678899999999999999999999999877 44543322221111 1
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHH
Q 005265 503 SHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD---AVIWGSLLAACKVHRNIM 577 (705)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~ 577 (705)
...+...+|...++...+. .|+ ...+..+..+|...|++++|...|+++ ...|+ ...+..+...+...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 1222233468888877654 565 888999999999999999999999987 55554 568899999999999999
Q ss_pred HHHHHHHHHHh
Q 005265 578 LGEYVAKKLLE 588 (705)
Q Consensus 578 ~a~~~~~~~~~ 588 (705)
+|...|++++.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999998864
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.7e-07 Score=85.18 Aligned_cols=125 Identities=13% Similarity=-0.024 Sum_probs=101.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHh
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQ-PDAVIWGSLLAACKV 572 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~ 572 (705)
+..+...+...|++++|...|+.. +.|+...+..+..+|.+.|++++|++.|++. ... .+...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 344555667778888888888755 3556778888888888888888888888876 223 367788888888999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCC----------------chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 573 HRNIMLGEYVAKKLLEIEPSNS----------------GPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 573 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
.|++++|...++++++..|.+. .++..++.+|.+.|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999888877 789999999999999999999999988643
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-07 Score=78.35 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=90.3
Q ss_pred CCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 005265 488 EKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIW 563 (705)
Q Consensus 488 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 563 (705)
+.|+. ..+......+.+.|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.|++. .+.| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 44554 35666777788888888888888877653 344 777888888888888888888888876 3444 57789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNM 603 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 603 (705)
..+..++...|++++|.+.|+++++++|++..++..|+.+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999998888777665
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.4e-07 Score=79.13 Aligned_cols=101 Identities=14% Similarity=-0.026 Sum_probs=87.1
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHH
Q 005265 523 GLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVL 599 (705)
Q Consensus 523 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 599 (705)
.+.|+ ...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...++++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 34554 556667778888999999999999887 3344 67788889999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 005265 600 LSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 600 l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
++.+|...|++++|.+.+++..+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998753
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.2e-07 Score=81.95 Aligned_cols=136 Identities=11% Similarity=0.026 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHh
Q 005265 428 VGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACS 503 (705)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 503 (705)
....+..+|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++.++ +.|+. .++..+..++.
T Consensus 56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 56 LATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHH
Confidence 34458999999999999999999876 34788999999999999999999999999999 66765 57777777776
Q ss_pred ccCc--HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 005265 504 HAGL--VEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIWGSLLA 568 (705)
Q Consensus 504 ~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 568 (705)
..|. .+.+...++... ...|....+..+..++...|++++|+..|++. ...|+......+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5554 344555555442 22333334455666778899999999999987 77898765554443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.66 E-value=7.7e-06 Score=85.64 Aligned_cols=373 Identities=8% Similarity=-0.053 Sum_probs=176.5
Q ss_pred ccC-ChhhHHHHHhccCCCChhhHHHHHHHHHhcCChhHHHHHHhcCCC--CCcccHHHHHHHHHhCCC-hHHHHHHHHH
Q 005265 66 KCG-CLYGARKVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPE--RDQCSWNSMVSGFAQHDR-FSEALGYFVK 141 (705)
Q Consensus 66 ~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~-~~~a~~~~~~ 141 (705)
+.| +++.|+.+|+.+.. .+-. |+++.+..+|++... |++..|..-+.-..+.+. .+....+|+.
T Consensus 6 ~~~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp ------CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred HcCcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 346 37788888777643 1111 889999999987654 677788877777766653 3456667777
Q ss_pred hHhC-CCCC-ChhhHHHHHHHhhC----CCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhc---CCChHHHHHHHhcc
Q 005265 142 MHSE-NFAL-SEYSFGSALSACAG----SVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGK---CGRVSCARRVFDGM 212 (705)
Q Consensus 142 m~~~-g~~p-~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~ 212 (705)
.... |..| +...|...+..+.. .++++.+..+|+..+.. ++. .+..+-..|.. ......+.++..+
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~~~~~~~~~~~- 148 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMG--SLSELWKDFENFELELNKITGKKIVGD- 148 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHCHHHHHHHHHH-
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhccccHHHHHHH-
Confidence 6653 4333 55667777766543 34577788888888874 211 11222222221 1111112211111
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHcc--CC-----hHHHHHHHHHHHHcCCCC
Q 005265 213 RERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASL--AA-----FKEGLQIHARLMRCEKLR 285 (705)
Q Consensus 213 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~ 285 (705)
. .+.+..|..+++.+...--..+...|...+.--... +- .+.+..+|++++.. .+
T Consensus 149 --------------~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--~p 210 (493)
T 2uy1_A 149 --------------T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--FY 210 (493)
T ss_dssp --------------H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TT
T ss_pred --------------H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--CC
Confidence 0 011122222222222100000111222222211110 00 12344455555554 23
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHH-HHHHHHhcC------------CCCeeh
Q 005265 286 NDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKS-ARLMFTKML------------ERNVVS 352 (705)
Q Consensus 286 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~~~------------~~~~~~ 352 (705)
.+..+|...+..+.+.|+.+.|..+|++.... +.... +--.|......++ ...+.+... ......
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~-l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 288 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF-LSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL 288 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH-HHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH-HHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHH
Confidence 34455555555555555555555555433211 11100 0001111100000 001111100 001234
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhh-cccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHH
Q 005265 353 WNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACAN-LADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNS 431 (705)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (705)
|-..+....+.+..+.|..+|.+. ... .++...|......-.. .++.+.|+.+|+...+... .++..+..
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-------~~~~~~~~ 359 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-------DSTLLKEE 359 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-------TCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-------CCHHHHHH
Confidence 555566665666777777777777 211 1222223211111111 2257778888877776542 23445556
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005265 432 LIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLL 485 (705)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 485 (705)
.++...+.|+.+.|..+|+++. +....|...+.--...|+.+.+..+++++..
T Consensus 360 yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6777777777788888887773 3566677776666667777777777766654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.64 E-value=3e-07 Score=76.67 Aligned_cols=96 Identities=13% Similarity=0.041 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 445667778888889999999888877 3344 67888889999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005265 606 ELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 606 ~~g~~~~A~~~~~~~~~~ 623 (705)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999998753
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.3e-07 Score=88.10 Aligned_cols=196 Identities=7% Similarity=-0.086 Sum_probs=148.9
Q ss_pred cccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHH
Q 005265 398 LADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEAL 477 (705)
Q Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 477 (705)
.|++++|.+++.+..+... .. .+...++++.|...|.+. ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-------~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-------TS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------CC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-------cc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHH
Confidence 4667777777777765432 11 111158899999988764 56788899999999
Q ss_pred HHHHHHHHC----CCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC--hhHHHHHHHHHHhcCChHHHH
Q 005265 478 GLFKKMLLC----GEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGL--APL--KDHYTCMVDLLGRAGCLDEAK 548 (705)
Q Consensus 478 ~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~~~~l~~~~~~~g~~~~A~ 548 (705)
..|.+..+. |-.+. ..+|..+...|...|++++|+..|++...-+.- .|. ..++..+..+|.+ |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999988763 11111 247888889999999999999999987654211 122 4678889999999 9999999
Q ss_pred HHHHhC-CCC---CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC------chHHHHHHHHHhcCChhHHH
Q 005265 549 TLIEAM-PMQ---PD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS------GPYVLLSNMYAELGRWGEVV 614 (705)
Q Consensus 549 ~~~~~~-~~~---p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~ 614 (705)
+.|++. .+. .+ ..++..+...+...|++++|...+++++++.|.+. ..+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999886 111 11 45788888999999999999999999999866543 25777888899999999999
Q ss_pred HHHHHHH
Q 005265 615 RVRKLMR 621 (705)
Q Consensus 615 ~~~~~~~ 621 (705)
..+++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999987
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.4e-06 Score=80.13 Aligned_cols=218 Identities=12% Similarity=0.062 Sum_probs=99.0
Q ss_pred hHHHHHHHHHhhhCCCCcchhhH-HHHHHHHhhcc--cHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHH----Hh
Q 005265 366 NEEALGLFRLLKRESVCPTHYTF-GNLLNACANLA--DLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMY----MK 438 (705)
Q Consensus 366 ~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~ 438 (705)
.++|+.++..++. +.|+..|. +.--.++...+ +++++...+..+..... .+..+|+.-...+ ..
T Consensus 49 s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-------k~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 49 SERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-------KNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp SHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-------TCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-------ccHHHHHHHHHHHHHHHHh
Confidence 3566666666665 34555553 22223333444 55666666665555542 3333343332222 22
Q ss_pred c---CCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCc--
Q 005265 439 C---GSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGT--EALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGL-- 507 (705)
Q Consensus 439 ~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~-- 507 (705)
. +++++++++++.+. .+|..+|+--...+.+.|.++ ++++.++++++. .| |...|+.-...+...|.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccc
Confidence 3 45555555555554 224445554444445555555 555555555552 22 22344433333444443
Q ss_pred ----HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCH
Q 005265 508 ----VEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDE-AKTLIEAM-PM----QPDAVIWGSLLAACKVHRNI 576 (705)
Q Consensus 508 ----~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~ 576 (705)
++++++.++.+... .| +...|+.+..++.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.
T Consensus 198 ~~~~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp CHHHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred hhhhHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 45555555544432 22 24444444444444444222 22333333 11 12344444444444444555
Q ss_pred HHHHHHHHHHHh-hCCCCCchH
Q 005265 577 MLGEYVAKKLLE-IEPSNSGPY 597 (705)
Q Consensus 577 ~~a~~~~~~~~~-~~p~~~~~~ 597 (705)
++|.++++.+.+ .+|-....|
T Consensus 275 ~~A~~~~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 275 NESRTVYDLLKSKYNPIRSNFW 296 (306)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHHhccChHHHHHH
Confidence 555555555443 344444333
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.1e-05 Score=74.75 Aligned_cols=167 Identities=15% Similarity=0.183 Sum_probs=126.3
Q ss_pred cCCCChhHHHHHHHHH----HHc---CChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcHH--HHHHHHHHhHHh
Q 005265 452 MVERDWVSWNAMIVGC----AQN---GYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLVE--EGRKYFSSMSKE 521 (705)
Q Consensus 452 ~~~~~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~ 521 (705)
...++..+|+.-...+ ... +++++++++++++++ ..| |..+|..-...+.+.|.++ +++++++.+.+.
T Consensus 98 ~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~ 175 (306)
T 3dra_A 98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT 175 (306)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Confidence 3455677777655555 455 788999999999998 445 4457777777777788877 899999988765
Q ss_pred cCCCCChhHHHHHHHHHHhcCC------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhC--
Q 005265 522 HGLAPLKDHYTCMVDLLGRAGC------LDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIML-GEYVAKKLLEIE-- 590 (705)
Q Consensus 522 ~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~-- 590 (705)
. .-+...|+.-..++.+.|+ ++++++.++++ ...| |...|+.+...+.+.|+... ....++++++++
T Consensus 176 d--~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 253 (306)
T 3dra_A 176 D--LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD 253 (306)
T ss_dssp C--TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT
T ss_pred C--CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC
Confidence 1 2346777777777777776 88899988876 3344 78888888888888777444 556777777765
Q ss_pred -CCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 591 -PSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 591 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
|.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 254 ~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 254 QVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp EESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 77888899999999999999999999999875
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.6e-07 Score=86.12 Aligned_cols=181 Identities=9% Similarity=0.001 Sum_probs=140.2
Q ss_pred hcCCHHHHHHHHHccCC---CChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCChh--------------
Q 005265 438 KCGSVEDGCRIFETMVE---RDWVSWNAM-------IVGCAQNGYGTEALGLFKKMLLCGEKPDHV-------------- 493 (705)
Q Consensus 438 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 493 (705)
..++...|.+.|.++.. .....|+.+ ...+...++..+++..+++-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57999999999999863 356789888 4666666666667666666554 444432
Q ss_pred --------hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----H
Q 005265 494 --------TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDA----V 561 (705)
Q Consensus 494 --------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 561 (705)
....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123356678889999999999997753 3565436677777999999999999999987544443 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC-CCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIE--PS-NSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++.+.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67778888999999999999999998643 54 4457889999999999999999999999864
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.59 E-value=9.3e-07 Score=77.65 Aligned_cols=126 Identities=9% Similarity=-0.021 Sum_probs=92.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKV 572 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 572 (705)
+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|.+.+++. ...| +...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4445555666666666666666665431 223566667777777777777777777765 2233 56788888888999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHH--HHhcCChhHHHHHHHHHHh
Q 005265 573 HRNIMLGEYVAKKLLEIEPSNSGPYVLLSNM--YAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 573 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 622 (705)
.|++++|...++++++..|.+...+..+..+ +.+.|++++|.+.+++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999988877554444 8888999999999987753
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.8e-06 Score=78.16 Aligned_cols=172 Identities=9% Similarity=-0.098 Sum_probs=139.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC-ChhHHHHHHHHHHHcC----ChHHHHH
Q 005265 404 GRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER-DWVSWNAMIVGCAQNG----YGTEALG 478 (705)
Q Consensus 404 a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g----~~~~A~~ 478 (705)
|.+.+....+. .++..+..|..+|...+++++|.+.|++..+. +..++..|...|.. + ++++|++
T Consensus 5 A~~~~~~aa~~---------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 5 PGSQYQQQAEA---------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp TTHHHHHHHHT---------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred HHHHHHHHHHC---------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 45566666664 35678888999999999999999999998754 77888888888887 6 8999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHh----cCChHHH
Q 005265 479 LFKKMLLCGEKPDHVTMIGVLCACSH----AGLVEEGRKYFSSMSKEHGLAPL---KDHYTCMVDLLGR----AGCLDEA 547 (705)
Q Consensus 479 ~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A 547 (705)
+|++..+.| +...+..+...+.. .+++++|..+|+...+ ..|+ +..+..|..+|.. .+++++|
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 999998865 55677777777877 8899999999998753 3453 7888899999998 8899999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhhCC
Q 005265 548 KTLIEAM-PMQPDAVIWGSLLAACKVH-R-----NIMLGEYVAKKLLEIEP 591 (705)
Q Consensus 548 ~~~~~~~-~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p 591 (705)
...|++. ...++...+..|...|... | ++++|...++++.+...
T Consensus 149 ~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999998 3335666777887777643 3 89999999999998754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.9e-06 Score=79.37 Aligned_cols=145 Identities=8% Similarity=-0.120 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccC
Q 005265 428 VGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAG 506 (705)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 506 (705)
.+..+...+...|++++|...|++...++...|..+...|...|++++|+..|++.++. .|+ ...+..+..++...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcc
Confidence 34556667777888888888888877777777888888888888888888888877773 343 346666777777777
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005265 507 LVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQP-DAVIWGSLLAACKVHRNIMLGEYVAKK 585 (705)
Q Consensus 507 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (705)
++++|...|+...+...-.+... +...| ....| ....+..+..++...|++++|...+++
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 77777777776654311111000 00000 01223 235777788888899999999999999
Q ss_pred HHhhCCCC
Q 005265 586 LLEIEPSN 593 (705)
Q Consensus 586 ~~~~~p~~ 593 (705)
++++.|++
T Consensus 147 al~~~p~~ 154 (213)
T 1hh8_A 147 ATSMKSEP 154 (213)
T ss_dssp HHTTCCSG
T ss_pred HHHcCccc
Confidence 99998876
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.2e-07 Score=91.71 Aligned_cols=191 Identities=6% Similarity=-0.088 Sum_probs=138.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHH
Q 005265 425 DIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLC 500 (705)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~ 500 (705)
+...+..+...+.+.|++++|...|++.. ..+...|..+...|...|++++|+..+++.++ +.|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45677888899999999999999999875 33788899999999999999999999999988 56654 57888889
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPLK-DHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLG 579 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 579 (705)
++...|++++|...|+...+. .|+. ..+...+....+..+...... .......++......+ ..+ ..|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 999999999999999987654 2321 111112222222111111111 2222333444443333 333 36899999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 005265 580 EYVAKKLLEIEPSNSGPYVLLSNMYAEL-GRWGEVVRVRKLMRKR 623 (705)
Q Consensus 580 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 623 (705)
.+.++++++.+|++......+...+.+. +++++|.++|+++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998877777777777776 7899999999988653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-06 Score=72.33 Aligned_cols=114 Identities=18% Similarity=0.155 Sum_probs=79.8
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 005265 493 VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PM-QPDAVIWGSLLAAC 570 (705)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 570 (705)
..+..+...+...|++++|.++++.+.+.. +.+...+..+...+.+.|++++|...++++ .. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 345555556666666666666666665431 223556666677777777777777777665 22 33566777888888
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005265 571 KVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELG 608 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 608 (705)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88899999999999999999988888888888776654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=9e-07 Score=74.31 Aligned_cols=113 Identities=12% Similarity=0.001 Sum_probs=71.8
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQ-PDAVIWGSLLAAC 570 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 570 (705)
.+..+...+...|++++|...|+...+ ..| +...+..+..+|...|++++|++.++++ ... .+...|..+...+
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 344444455555555555555554432 223 2445555555566666666666665554 222 2466777777778
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005265 571 KVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGR 609 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 609 (705)
...|++++|...++++++.+|.+...+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888877664
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=82.87 Aligned_cols=192 Identities=10% Similarity=-0.073 Sum_probs=140.2
Q ss_pred hcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHH-------HHHHHhcCCHHHHHHHHHccCC--C-------C----
Q 005265 397 NLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSL-------IDMYMKCGSVEDGCRIFETMVE--R-------D---- 456 (705)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~--~-------~---- 456 (705)
..++...|.+.|..+.+.. +.....|..+ ...+.+.++..+++..+.+-.. | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGL 90 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTT
T ss_pred cCCCHHHHHHHHHHHHHhC-------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCc
Confidence 4677788888888888776 3566677766 4555555556666666555443 1 1
Q ss_pred -----------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 005265 457 -----------WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLA 525 (705)
Q Consensus 457 -----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 525 (705)
...+-.....+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|+...+. . .
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d 166 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-D 166 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-C
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-C
Confidence 11344567788899999999999998877 3466555556666888999999999999855321 1 1
Q ss_pred CC--hhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 005265 526 PL--KDHYTCMVDLLGRAGCLDEAKTLIEAMP---MQPD--AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYV 598 (705)
Q Consensus 526 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 598 (705)
|. ...+..+..++.+.|++++|+..|++.. ..|. ...+.....++.+.|+.++|...|+++...+|+ ..+..
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence 21 3467788999999999999999999882 2253 346777888899999999999999999999998 65554
Q ss_pred HH
Q 005265 599 LL 600 (705)
Q Consensus 599 ~l 600 (705)
.|
T Consensus 246 aL 247 (282)
T 4f3v_A 246 AL 247 (282)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-06 Score=72.92 Aligned_cols=116 Identities=13% Similarity=0.022 Sum_probs=84.9
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACK 571 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 571 (705)
.+..+...+...|++++|...++...... +.+...+..+...+...|++++|.+.+++. ...| +...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 45555556666666666666666665431 223566666777777777777777777665 2233 4667888888899
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChh
Q 005265 572 VHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWG 611 (705)
Q Consensus 572 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 611 (705)
..|++++|...++++++..|++...+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999888999999998888763
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.53 E-value=7.2e-07 Score=88.78 Aligned_cols=161 Identities=14% Similarity=-0.008 Sum_probs=117.3
Q ss_pred CCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHH
Q 005265 440 GSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFS 516 (705)
Q Consensus 440 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 516 (705)
+++++|...|+.... .+...|..+...|.+.|++++|+..|++.++ +.|+...+ ..+.+.+.-.
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~~~ 193 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKAQA 193 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHHHH
Confidence 344455555544332 1455777788888888888888888888877 34443210 0011111100
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 517 SMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 517 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
.....|..+..+|.+.|++++|+..++++ ...| +...|..+..++...|++++|...|+++++++|++.
T Consensus 194 ---------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 194 ---------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264 (336)
T ss_dssp ---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred ---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 01456788888889999999999988887 3344 677889999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 005265 595 GPYVLLSNMYAELGRWGEV-VRVRKLMRK 622 (705)
Q Consensus 595 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 622 (705)
.++..++.++.+.|++++| ...+++|..
T Consensus 265 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 265 AAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 556777653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.4e-07 Score=80.94 Aligned_cols=119 Identities=6% Similarity=0.056 Sum_probs=88.6
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--H
Q 005265 503 SHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAA-CKVHRNI--M 577 (705)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~--~ 577 (705)
...|++++|...++...+.. +.+...+..+..+|...|++++|...|+++ ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 45677777777777765541 224677777888888888888888888776 2233 56677777777 7788888 8
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 578 LGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 578 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+|...++++++.+|++...+..++.+|...|++++|...++++.+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999999999999988888889999999999999999999888754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2.5e-05 Score=75.98 Aligned_cols=159 Identities=9% Similarity=-0.099 Sum_probs=120.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCC---Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCh----hhHH
Q 005265 431 SLIDMYMKCGSVEDGCRIFETMVER---DW------VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEK-PDH----VTMI 496 (705)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~~~~ 496 (705)
..+..+...|++++|...+++..+. +. ..+..+...+...|++++|+..|++..+.... ++. .+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788899999999999886532 11 13334666677788999999999999984322 222 2688
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhc----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHH
Q 005265 497 GVLCACSHAGLVEEGRKYFSSMSKEH----GLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-------PMQPD-AVIW 563 (705)
Q Consensus 497 ~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~ 563 (705)
.+..+|...|++++|..+|+.+.+.. +..+. ..++..+...|.+.|++++|.+.+++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88889999999999999999887422 11222 447888999999999999999998876 12222 5688
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhh
Q 005265 564 GSLLAACKVHRN-IMLGEYVAKKLLEI 589 (705)
Q Consensus 564 ~~l~~~~~~~g~-~~~a~~~~~~~~~~ 589 (705)
..+..++...|+ +++|.+.+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 888888999994 69999999999875
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.2e-06 Score=75.23 Aligned_cols=104 Identities=9% Similarity=-0.008 Sum_probs=87.3
Q ss_pred CCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 005265 488 EKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIW 563 (705)
Q Consensus 488 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 563 (705)
+.|+. ..+..+...+...|++++|...|+.+.+. .|+ ...|..+..+|.+.|++++|+..|+++ .+.| ++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 45554 36777778888999999999999988754 554 888899999999999999999999987 4445 57788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
..+..++...|++++|...|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8999999999999999999999999998764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.4e-07 Score=75.71 Aligned_cols=95 Identities=7% Similarity=0.020 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc-------hHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG-------PYV 598 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~ 598 (705)
...+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|++.++++++++|++.. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345666788888888888888888876 4445 5778888888899999999999999999998877653 567
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 005265 599 LLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 599 ~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.++.++...|++++|++.+++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788888999999999999988764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.1e-06 Score=82.52 Aligned_cols=163 Identities=9% Similarity=-0.135 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCC---CCh------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC---CC--h
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVE---RDW------VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEK---PD--H 492 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~ 492 (705)
..+...+..+...|++++|.+.+.+..+ ... ..+..+...+...|++++|+..+++..+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567778888899999888875432 111 22344556677788999999999998863221 11 2
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CC------CC-C
Q 005265 493 VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-----KDHYTCMVDLLGRAGCLDEAKTLIEAM-PM------QP-D 559 (705)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~ 559 (705)
.+++.+...|...|++++|..+++++.+.....|+ ..++..+...|.+.|++++|++.+++. .+ .. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 37788888899999999999999988632111222 257888899999999999999998876 11 11 1
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHhh
Q 005265 560 AVIWGSLLAACKVHRNIMLG-EYVAKKLLEI 589 (705)
Q Consensus 560 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 589 (705)
..++..+...+...|++++| ...+++++.+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56788888889999999999 7888988765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.47 E-value=8.8e-07 Score=71.65 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCchHHHHHHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQ-PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS--NSGPYVLLSNM 603 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 603 (705)
...+..+...+.+.|++++|...+++. ... .+...|..+...+...|++++|...++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 455666777777788888888877776 223 35677888888888999999999999999999999 88889999999
Q ss_pred HHhc-CChhHHHHHHHHHHhCC
Q 005265 604 YAEL-GRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 604 ~~~~-g~~~~A~~~~~~~~~~~ 624 (705)
+... |++++|.+.+++.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999999887654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=6.9e-07 Score=73.71 Aligned_cols=94 Identities=13% Similarity=0.000 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 005265 530 HYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAEL 607 (705)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 607 (705)
.+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455667788889999999988887 3445 6778888888899999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 005265 608 GRWGEVVRVRKLMRKR 623 (705)
Q Consensus 608 g~~~~A~~~~~~~~~~ 623 (705)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998754
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=3e-06 Score=69.11 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345556666677777777777777665 2233 56667777777777777888888888877777777777777778888
Q ss_pred hcCChhHHHHHHHHHHh
Q 005265 606 ELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 606 ~~g~~~~A~~~~~~~~~ 622 (705)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 88888888877777764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.9e-06 Score=72.86 Aligned_cols=98 Identities=12% Similarity=0.031 Sum_probs=84.3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 005265 526 PLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNM 603 (705)
Q Consensus 526 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 603 (705)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34677788888888888888888888876 3334 577888888889999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 005265 604 YAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 604 ~~~~g~~~~A~~~~~~~~~~ 623 (705)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999998753
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.5e-06 Score=75.51 Aligned_cols=129 Identities=12% Similarity=0.026 Sum_probs=75.3
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC-C----H
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEH---GLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-P---MQP-D----A 560 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p-~----~ 560 (705)
++..+...+...|++++|...+++..... +..|. ...+..+...|...|++++|.+.+++. . ..+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 44444444445555555555544443211 11111 344555566666666666666666554 1 012 2 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCC----chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 561 VIWGSLLAACKVHRNIMLGEYVAKKLLEIEP--SNS----GPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.++..+...+...|++++|...+++++++.+ .+. ..+..++.++...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3456666677778888888888888876522 121 1246788888888888888888887764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-06 Score=76.78 Aligned_cols=95 Identities=11% Similarity=0.031 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
...+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|++...|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555555556666666666665554 2223 45555666666666666666666666666666666666666666666
Q ss_pred hcCChhHHHHHHHHHHh
Q 005265 606 ELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 606 ~~g~~~~A~~~~~~~~~ 622 (705)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666666553
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.2e-06 Score=70.80 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=88.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005265 527 LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMY 604 (705)
Q Consensus 527 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 604 (705)
+...+..+...+.+.|++++|.+.|++. ...| +..+|..+...+...|++++|...++++++..|++...+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4778888999999999999999999987 4455 6788899999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 005265 605 AELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 605 ~~~g~~~~A~~~~~~~~~~ 623 (705)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999998753
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=7.1e-07 Score=76.71 Aligned_cols=106 Identities=9% Similarity=-0.065 Sum_probs=82.4
Q ss_pred CCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 005265 488 EKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIW 563 (705)
Q Consensus 488 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 563 (705)
+.|+. ..+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|+..|+++ ...| +...|
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 44544 35666677777888888888888877653 34 4777788888888888888888888876 3344 56778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP 596 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 596 (705)
..+..++...|++++|...|++++++.|+++..
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 888888999999999999999999999988764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.42 E-value=4.9e-06 Score=68.63 Aligned_cols=96 Identities=19% Similarity=0.226 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PM-QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
...+..+...+.+.|++++|.+.++++ .. +.+..++..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999987 22 3467788999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005265 606 ELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 606 ~~g~~~~A~~~~~~~~~~ 623 (705)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998753
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.4e-06 Score=73.90 Aligned_cols=91 Identities=19% Similarity=0.040 Sum_probs=72.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------C
Q 005265 532 TCMVDLLGRAGCLDEAKTLIEAM-PMQPD-------------AVIWGSLLAACKVHRNIMLGEYVAKKLLEI-------E 590 (705)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~ 590 (705)
......+.+.|++++|+..|++. .+.|+ ...|..+..++...|++++|+..+++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 34445555566666666666554 22222 338899999999999999999999999999 9
Q ss_pred CCCCchH----HHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 591 PSNSGPY----VLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 591 p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
|++...| ..++.++...|++++|+..|++..+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999 9999999999999999999999875
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.3e-06 Score=74.91 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 560 AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 560 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
...|..+..++...|++++|...++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 457888888899999999999999999999999999999999999999999999999998874
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=5e-06 Score=69.28 Aligned_cols=97 Identities=15% Similarity=0.097 Sum_probs=87.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005265 527 LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMY 604 (705)
Q Consensus 527 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 604 (705)
+...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3667788889999999999999999987 3334 6788888999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 005265 605 AELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 605 ~~~g~~~~A~~~~~~~~~~ 623 (705)
...|++++|.+.+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998753
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.1e-06 Score=71.77 Aligned_cols=95 Identities=16% Similarity=0.049 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSN 602 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 602 (705)
...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 556666667777777777777777766 44565 4566667777777788888888888887777777777777888
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 005265 603 MYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 603 ~~~~~g~~~~A~~~~~~~~~ 622 (705)
+|...|++++|.+.+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888887777764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.2e-06 Score=76.25 Aligned_cols=154 Identities=14% Similarity=0.018 Sum_probs=115.1
Q ss_pred HhcCCHHHHHH---HHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHhccCcH
Q 005265 437 MKCGSVEDGCR---IFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLC----GEKPD-HVTMIGVLCACSHAGLV 508 (705)
Q Consensus 437 ~~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~ 508 (705)
...|++++|.+ .+..-......++..+...+...|++++|...+++..+. |..|. ..++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45789999999 665544446678899999999999999999999998762 22222 24677888889999999
Q ss_pred HHHHHHHHHhHHhcCCCC-C----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCC
Q 005265 509 EEGRKYFSSMSKEHGLAP-L----KDHYTCMVDLLGRAGCLDEAKTLIEAM----PMQPD----AVIWGSLLAACKVHRN 575 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~ 575 (705)
++|...+++..+...-.+ + ...+..+...+...|++++|...+++. ...++ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 999999988765422122 1 456788889999999999999998876 11122 2345777788999999
Q ss_pred HHHHHHHHHHHHhhC
Q 005265 576 IMLGEYVAKKLLEIE 590 (705)
Q Consensus 576 ~~~a~~~~~~~~~~~ 590 (705)
+++|.+.+++++++.
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998763
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=3.4e-06 Score=76.71 Aligned_cols=171 Identities=9% Similarity=-0.122 Sum_probs=107.6
Q ss_pred HHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHH
Q 005265 433 IDMYMKCGSVEDGCRIFETMVER---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVE 509 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 509 (705)
+......|+++.|.+.++.-... ....|..+...+...|++++|+..|++.++ ..|+...+... ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------hHH
Confidence 33444556666666666543322 445677788888889999999999998887 33432211100 000
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005265 510 EGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLL 587 (705)
Q Consensus 510 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 587 (705)
.-. .. .....+..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|...+++++
T Consensus 81 ~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 00 01356777788888888999888888876 3334 67788888999999999999999999999
Q ss_pred hhCCCCCchHHHHHHHHHhcCChhHHH-HHHHHHHhCC
Q 005265 588 EIEPSNSGPYVLLSNMYAELGRWGEVV-RVRKLMRKRG 624 (705)
Q Consensus 588 ~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 624 (705)
+++|++..++..++.++...|+.+++. ..+..|..++
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999888877 5666665443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-05 Score=65.41 Aligned_cols=109 Identities=14% Similarity=0.017 Sum_probs=75.4
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACK 571 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 571 (705)
.+..+...+...|++++|...++...... +.+...+..+..+|.+.|++++|...+++. ...| +...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44455555666666666666666665431 223566666777777777777777777665 2233 5667778888888
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005265 572 VHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMY 604 (705)
Q Consensus 572 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 604 (705)
..|++++|...++++++.+|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 889999999999999999998877776666553
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.29 E-value=8.4e-06 Score=72.47 Aligned_cols=126 Identities=7% Similarity=0.044 Sum_probs=93.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCCh-
Q 005265 468 AQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDL-LGRAGCL- 544 (705)
Q Consensus 468 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~- 544 (705)
...|++++|+..+++..+. .|+ ...+..+...+...|++++|...|+.+.+.. +.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 3457777888888887773 343 4577777778888888888888888776542 2246677777777 7788888
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 005265 545 -DEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPY 597 (705)
Q Consensus 545 -~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 597 (705)
++|...++++ ...| +...|..+...+...|++++|...++++++..|++....
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8998888877 3344 567888888889999999999999999999999886533
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.28 E-value=5.3e-06 Score=70.67 Aligned_cols=104 Identities=9% Similarity=-0.058 Sum_probs=76.2
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAAC 570 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 570 (705)
.+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|+..|++. ...| +...|..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4455556667777777777777776543 34 3666777777788888888888887776 2333 566777888889
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 005265 571 KVHRNIMLGEYVAKKLLEIEPSNSGPYVLL 600 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 600 (705)
...|++++|...+++++++.|+++......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 999999999999999999999887654443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-05 Score=68.62 Aligned_cols=109 Identities=11% Similarity=-0.072 Sum_probs=71.5
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLL 567 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 567 (705)
.+..+...+...|++++|...|+...+ ..|+ ...+..+..+|...|++++|+..+++. ...| +...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 344444455555555555555554432 2333 445556666666677777777666655 2233 566777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 568 AACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 568 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
.++...|++++|...++++++++|++...+..+..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 88888999999999999999999988776666666543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.27 E-value=5.6e-06 Score=82.28 Aligned_cols=96 Identities=7% Similarity=-0.091 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD----------------AVIWGSLLAACKVHRNIMLGEYVAKKLLEIE 590 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 590 (705)
...+..+...|.+.|++++|+..|++. ...|+ ..+|..+..++...|++++|...++++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 556677777777788888888777766 23333 4788999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 591 PSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 591 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
|+++.+|..++.+|...|++++|+..+++..+.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999864
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.27 E-value=7.8e-06 Score=78.97 Aligned_cols=188 Identities=7% Similarity=-0.055 Sum_probs=120.9
Q ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHH
Q 005265 386 YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNA 462 (705)
Q Consensus 386 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 462 (705)
..+..+...+...|++++|...+..+++.. +.+...+..+..+|.+.|++++|...+++..+ .+...|..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 77 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 77 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 344445555666666666666666666654 45778888899999999999999999988764 36678888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 005265 463 MIVGCAQNGYGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRA 541 (705)
Q Consensus 463 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 541 (705)
+..+|...|++++|+..|++..+ +.|+.. .+...+..... ...+..... .... ...++......+...+ .
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~-~~~~~~~i~~~l~~l~--~ 148 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALR---IAKKKRWNS-IEER-RIHQESELHSYLTRLI--A 148 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCCCSHHHHHHH---HHHHHHHHH-HHHT-CCCCCCHHHHHHHHHH--H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHH---HHHHHHHHH-HHHH-HHhhhHHHHHHHHHHH--H
Confidence 99999999999999999999887 334331 11112221111 111222222 2122 3444555555554433 6
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhc-CCHHHHHHHHHHHHhh
Q 005265 542 GCLDEAKTLIEAM-PMQPDAVIWGSLLAA-CKVH-RNIMLGEYVAKKLLEI 589 (705)
Q Consensus 542 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~~~-g~~~~a~~~~~~~~~~ 589 (705)
|+.++|++.++.. ...|+......-+.. +... +.+++|.++|.++.+.
T Consensus 149 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 149 AERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8999999988877 567765544333333 4444 6788899999888764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-05 Score=70.34 Aligned_cols=107 Identities=12% Similarity=-0.020 Sum_probs=80.6
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005265 493 VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAA 569 (705)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 569 (705)
..+..+...+...|++++|+..|+...+. .| +...|..+..+|.+.|++++|+..|++. ...| +...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34555666666777777777777766543 34 3667777777888888888888887776 3344 57788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005265 570 CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSN 602 (705)
Q Consensus 570 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 602 (705)
+...|++++|...|+++++++|++...+...+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999999999999999886655443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=1e-05 Score=67.09 Aligned_cols=109 Identities=12% Similarity=-0.074 Sum_probs=74.2
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAAC 570 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 570 (705)
.+......+...|++++|...|+...+. .| +...|..+..+|.+.|++++|+..+++. ...| +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3444555566666666666666666543 23 3566677777777777777777777765 3334 466777888888
Q ss_pred HhcCCHHHHHHHHHHHHhhC------CCCCchHHHHHHHHH
Q 005265 571 KVHRNIMLGEYVAKKLLEIE------PSNSGPYVLLSNMYA 605 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 605 (705)
...|++++|...++++++++ |++......+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 88888999999999888888 777666666555543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.25 E-value=9.7e-06 Score=67.49 Aligned_cols=95 Identities=9% Similarity=0.044 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------CchHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PM-QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN-------SGPYV 598 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 598 (705)
...+..+...+...|++++|...|++. .. +.+...+..+...+...|++++|...++++++..|++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345677778888888888888888876 22 3467788888888999999999999999999997766 77889
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 005265 599 LLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 599 ~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.++.+|...|++++|.+.+++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999999885
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.8e-06 Score=69.45 Aligned_cols=89 Identities=18% Similarity=0.138 Sum_probs=59.6
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHHH
Q 005265 534 MVDLLGRAGCLDEAKTLIEAM-PMQPD-A---VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN---SGPYVLLSNMYA 605 (705)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 605 (705)
+...+.+.|++++|...|+++ ...|+ . ..+..+..++...|++++|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 445555666666666666655 21222 2 356666666777777777777777777777777 555777777777
Q ss_pred hcCChhHHHHHHHHHHh
Q 005265 606 ELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 606 ~~g~~~~A~~~~~~~~~ 622 (705)
..|++++|...++++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777777764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.9e-05 Score=69.02 Aligned_cols=127 Identities=7% Similarity=-0.088 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 005265 459 SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDL 537 (705)
Q Consensus 459 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 537 (705)
.|..+...+...|++++|...|++..+. .| +..++..+...+...|++++|...++...+.. +.+...+..+..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 4455555666666666666666666652 33 33455666666666677777777766665431 2235566666677
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 538 LGRAGCLDEAKTLIEAM-PMQP-DAVIWG--SLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 538 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
|.+.|++++|...++++ ...| +...+. ..+..+...|++++|...+++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 77777777777777665 2223 333442 2333356677777777777776544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00077 Score=65.77 Aligned_cols=223 Identities=12% Similarity=0.067 Sum_probs=134.2
Q ss_pred HHHHcCChHHHHHHHHHhhhCCCCcchh-hHHHHHHHHhhcc-cHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHH
Q 005265 359 GYTQNGENEEALGLFRLLKRESVCPTHY-TFGNLLNACANLA-DLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMY 436 (705)
Q Consensus 359 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 436 (705)
.....+..++|+.++++++..+ |+.. .++.--..+...+ .++++...+..+.... +.+..+|+.-...+
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-------PKny~aW~hR~wlL 133 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-------LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-------CCCHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHH
Confidence 3344555677888888887753 4433 3454444555566 4888888888888766 45677777766666
Q ss_pred Hhc-C-CHHHHHHHHHccCCC---ChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCC-ChhhHHHHHHHH
Q 005265 437 MKC-G-SVEDGCRIFETMVER---DWVSWNAMIVGCAQNGYGT--------EALGLFKKMLLCGEKP-DHVTMIGVLCAC 502 (705)
Q Consensus 437 ~~~-g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p-~~~~~~~ll~~~ 502 (705)
.+. + ++++++++++++.+. |..+|+--...+.+.|.++ ++++.++++++. .| |...|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 665 6 788888888888754 5566666555555555555 788888888874 34 445666666666
Q ss_pred hccCc-------HHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCh--------------------HHHHHHHHhC
Q 005265 503 SHAGL-------VEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCL--------------------DEAKTLIEAM 554 (705)
Q Consensus 503 ~~~g~-------~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~ 554 (705)
.+.+. ++++++.++++... .|+ ...|+.+-..+.+.|+. .+..++..++
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPM 288 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHH
Confidence 66664 67777777766543 343 66676666666666653 2233333333
Q ss_pred -CC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhCCCCCc
Q 005265 555 -PM-------QPDAVIWGSLLAACKVHRNIMLGEYVAKKLL-EIEPSNSG 595 (705)
Q Consensus 555 -~~-------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~ 595 (705)
.. .++...+..++..|...|+.++|.++++.+. +.+|-...
T Consensus 289 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~ 338 (349)
T 3q7a_A 289 PSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAG 338 (349)
T ss_dssp CC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred HhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHH
Confidence 11 1345555555555555566666666666554 33554433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.9e-05 Score=71.69 Aligned_cols=118 Identities=10% Similarity=-0.043 Sum_probs=84.9
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C----------------HHHHH
Q 005265 503 SHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-D----------------AVIWG 564 (705)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~ 564 (705)
...|+++.+.+.|+..... .......+..+...+.+.|++++|+..|++. ...| + ..+|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 3345555555555422211 0112445666677777788888888877765 2222 1 26788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 565 SLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 565 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+..++...|++++|...++++++++|++..++..++.+|...|++++|.+.+++..+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999999999999999999999874
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00041 Score=67.35 Aligned_cols=228 Identities=12% Similarity=0.076 Sum_probs=142.2
Q ss_pred HHcCChH-HHHHHHHHhhhCCCCcchhh-HHHHHHHHhhcc----------cHHHHHHHHHHHHHhCCCCCCCCCCcHhH
Q 005265 361 TQNGENE-EALGLFRLLKRESVCPTHYT-FGNLLNACANLA----------DLQLGRQAHTHVVKHGLRFLSGEESDIFV 428 (705)
Q Consensus 361 ~~~g~~~-~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 428 (705)
.+.|.++ +|+.++..++.. .|+..| ++.--..+...+ .++.+..++..+.... +.+..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-------PKny~a 110 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-------PKSYGT 110 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-------CCCHHH
Confidence 3455554 788888888864 455443 222222222222 2567788888888776 467777
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHccCC---CChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCh-hhHHHHHHH
Q 005265 429 GNSLIDMYMKCG--SVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGY-GTEALGLFKKMLLCGEKPDH-VTMIGVLCA 501 (705)
Q Consensus 429 ~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~ 501 (705)
|+.-...+.+.| .+++++.+++++.+ +|..+|+--...+...|. ++++++.++++++. .|+. ..|+.....
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~l 188 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 777777777777 47888888888763 477788877777777787 58889999988884 4433 455554444
Q ss_pred Hhcc--------------CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc-----------CChHHHHHHHHhC-
Q 005265 502 CSHA--------------GLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRA-----------GCLDEAKTLIEAM- 554 (705)
Q Consensus 502 ~~~~--------------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~- 554 (705)
+... +.++++++.++..... .|+ ...|+.+-..+.+. +.++++++.++++
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell 265 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ 265 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH
Confidence 4333 4577788877777643 444 66666655555554 3466677766666
Q ss_pred CCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 005265 555 PMQPDAVIWGSLLAA-----CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNM 603 (705)
Q Consensus 555 ~~~p~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 603 (705)
...||. .|..+..+ ....|..++....+.++.+++|...+.|..+..-
T Consensus 266 e~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 266 ELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred hhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 445553 33322221 1134566677777777777777766666555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.4e-06 Score=71.43 Aligned_cols=82 Identities=16% Similarity=0.078 Sum_probs=55.0
Q ss_pred cCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHH
Q 005265 541 AGCLDEAKTLIEAM-PM---QP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVR 615 (705)
Q Consensus 541 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 615 (705)
.|++++|+..|++. .. .| +...|..+...+...|++++|...++++++.+|+++..+..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666655 33 23 344666667777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 005265 616 VRKLMRK 622 (705)
Q Consensus 616 ~~~~~~~ 622 (705)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-05 Score=83.89 Aligned_cols=161 Identities=13% Similarity=-0.004 Sum_probs=111.8
Q ss_pred CCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHH
Q 005265 440 GSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFS 516 (705)
Q Consensus 440 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 516 (705)
+++++|...|+.... .....|..+...|.+.|++++|+..|++.++ +.|+...+ . .+...+ ..
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~----------~-~~~~~~-~~ 313 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL----------S-EKESKA-SE 313 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC----------C-HHHHHH-HH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC----------C-hHHHHH-HH
Confidence 344455544443332 1345677788888888888888888888887 33433210 0 011110 00
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 517 SMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 517 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
. .....|..+..+|.+.|++++|+..++++ .+.| +...|..+..++...|++++|...|+++++++|++.
T Consensus 314 ~--------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 314 S--------FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp H--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred H--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 0 11456788888999999999999999887 3344 677899999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChhHHHH-HHHHHHh
Q 005265 595 GPYVLLSNMYAELGRWGEVVR-VRKLMRK 622 (705)
Q Consensus 595 ~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 622 (705)
.++..++.++.+.|++++|.+ .+++|..
T Consensus 386 ~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 386 AARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998774 5555554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.15 E-value=7e-06 Score=85.82 Aligned_cols=116 Identities=9% Similarity=-0.001 Sum_probs=92.6
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005265 500 CACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNI 576 (705)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 576 (705)
..+...|++++|.+.+++..+. .|+ ...|..+..+|.+.|++++|++.+++. ...| +..+|..+..++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3456778888888888877654 454 778888888888889999998888877 4445 577888888889999999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHH--HHhcCChhHHHHHHH
Q 005265 577 MLGEYVAKKLLEIEPSNSGPYVLLSNM--YAELGRWGEVVRVRK 618 (705)
Q Consensus 577 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 618 (705)
++|.+.++++++++|++...+..++.+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999889888888 888899999999887
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.14 E-value=2e-05 Score=66.43 Aligned_cols=98 Identities=7% Similarity=-0.137 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005265 492 HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLA 568 (705)
Q Consensus 492 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 568 (705)
...+..+...+...|++++|...|+..... .|+ ...+..+..+|...|++++|...+++. ...| +...|..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 345666666666677777777777666543 233 566777777777777777777777766 2233 5667888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCC
Q 005265 569 ACKVHRNIMLGEYVAKKLLEIEPS 592 (705)
Q Consensus 569 ~~~~~g~~~~a~~~~~~~~~~~p~ 592 (705)
++...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888999999999998888776
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.3e-05 Score=79.98 Aligned_cols=190 Identities=5% Similarity=-0.106 Sum_probs=139.8
Q ss_pred HHHHHhcCCHHHHHHHHHccCCC-----C---------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCC
Q 005265 433 IDMYMKCGSVEDGCRIFETMVER-----D---------------WVSWNAMIVGCAQNGYGTEALGLFKKMLLC-GEKPD 491 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~~-----~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~ 491 (705)
...+.+.|++++|.+.|..+.+. + ..++..++..|...|++++|.+.+.++... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567889999999999877421 1 124778899999999999999999987763 11122
Q ss_pred hh----hHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-----C--C
Q 005265 492 HV----TMIGVLCACSHAGLVEEGRKYFSSMSKE---HGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-----P--M 556 (705)
Q Consensus 492 ~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~--~ 556 (705)
.. ..+.+-..+...|+++.|..+++..... .+..+. ..++..+...|...|++++|..++++. . .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 2233334455678999999988876532 123333 667888999999999999999998876 1 1
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCC----CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 557 QPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIE---PSN----SGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 557 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+|. ..++..++..|...|++++|...+++++... ++. ...+..++..+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 222 4477788888999999999999999998763 222 23467788888999999999998877754
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0002 Score=69.93 Aligned_cols=212 Identities=12% Similarity=0.084 Sum_probs=154.4
Q ss_pred cHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHHccCC---CChhHHHHHHHHHHHc-C-Ch
Q 005265 400 DLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCG-SVEDGCRIFETMVE---RDWVSWNAMIVGCAQN-G-YG 473 (705)
Q Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~ 473 (705)
..++|.++...++..+ +.+..+|+.--..+...| .++++++.++.+.. ++..+|+.-...+... + ++
T Consensus 69 ~se~AL~lt~~~L~~n-------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp CSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC
T ss_pred CCHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh
Confidence 3457888888888887 467778888777888888 59999999998864 4677888877777776 7 89
Q ss_pred HHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHH--------HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC-
Q 005265 474 TEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVE--------EGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGC- 543 (705)
Q Consensus 474 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~- 543 (705)
++++++++++++ ..|. ..+|..-...+.+.|.++ ++++.++.+.+.. .-+...|+....++.+.++
T Consensus 142 ~~EL~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 142 VSEIEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp HHHHHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcccc
Confidence 999999999998 4454 456666555555555555 8999999887651 2357788888888888886
Q ss_pred ------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhhC-----
Q 005265 544 ------LDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNI--------------------MLGEYVAKKLLEIE----- 590 (705)
Q Consensus 544 ------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~----- 590 (705)
++++++.++++ ...| |...|+.+-..+.+.|+. .........+....
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 68889888876 3445 778888877777776654 12222222222222
Q ss_pred -CCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 591 -PSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 591 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+..+.+...|+++|...|+.++|.++++.+.+
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 35556678999999999999999999999864
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.9e-05 Score=68.55 Aligned_cols=93 Identities=16% Similarity=0.094 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CCc
Q 005265 530 HYTCMVDLLGRAGCLDEAKTLIEAM----PMQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS------NSG 595 (705)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 595 (705)
.+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++++..+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4444555555555555555555543 00111 335666677778888888888888888766221 234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 596 PYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 577889999999999999999988764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.09 E-value=4.8e-05 Score=63.15 Aligned_cols=102 Identities=11% Similarity=0.009 Sum_probs=68.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-h---hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 005265 498 VLCACSHAGLVEEGRKYFSSMSKEHGLAPL-K---DHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD----AVIWGSLLA 568 (705)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 568 (705)
+...+...|++++|...|+.+.+. .|+ . ..+..+..+|.+.|++++|...|++. ...|+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344555666666666666666543 222 2 35666667777777777777777665 22333 556777778
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005265 569 ACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSN 602 (705)
Q Consensus 569 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 602 (705)
++...|++++|...++++++..|+++........
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 8888999999999999999999987654444333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.5e-05 Score=65.62 Aligned_cols=97 Identities=10% Similarity=0.060 Sum_probs=66.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACK 571 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 571 (705)
+..+...+...|++++|...|+.+.+. .| +...|..+..++.+.|++++|+..|++. ...| +...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 444555666777777777777776643 34 3667777777777778888887777776 3444 5667777888888
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCC
Q 005265 572 VHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 572 ~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
..|++++|...++++++.+|++.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888888754
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.08 E-value=3.1e-05 Score=62.23 Aligned_cols=100 Identities=10% Similarity=-0.027 Sum_probs=72.9
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 005265 493 VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP---DAVIWGSLLA 568 (705)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~ 568 (705)
..+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 355566666777777777777777765431 223666777777888888888888887776 3334 4677888888
Q ss_pred HHHhc-CCHHHHHHHHHHHHhhCCCCC
Q 005265 569 ACKVH-RNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 569 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 594 (705)
.+... |++++|.+.++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 889999999998888888764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.08 E-value=2.3e-05 Score=78.75 Aligned_cols=137 Identities=10% Similarity=-0.052 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHH
Q 005265 458 VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVD 536 (705)
Q Consensus 458 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 536 (705)
..|..+...+.+.|++++|+..|++.++. .|+.. .... .+... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHH
Confidence 45777777788888888888888877761 11110 0000 11110 1223 3667888999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHH
Q 005265 537 LLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVV 614 (705)
Q Consensus 537 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 614 (705)
+|.+.|++++|++.++++ ...| +...|..+..++...|++++|...++++++++|++...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 5556 57788899999999999999999999999999999999999999999999888776
Q ss_pred HH
Q 005265 615 RV 616 (705)
Q Consensus 615 ~~ 616 (705)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.04 E-value=4.1e-05 Score=63.53 Aligned_cols=58 Identities=7% Similarity=-0.074 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhH
Q 005265 460 WNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMS 519 (705)
Q Consensus 460 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 519 (705)
+..+...+.+.|++++|++.|++.++ +.|+. ..|..+..++...|++++|++.++...
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 44455555555555555555555555 33432 344445555555555555555555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.04 E-value=2.1e-05 Score=81.85 Aligned_cols=96 Identities=7% Similarity=-0.079 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD----------------AVIWGSLLAACKVHRNIMLGEYVAKKLLEIE 590 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 590 (705)
...+..+...|.+.|++++|+..|+++ ...|+ ..+|..+..++.+.|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 445556666666677777777766665 22222 5788889999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 591 PSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 591 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
|++..+|..++.+|...|++++|+..+++..+.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999864
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.04 E-value=2e-05 Score=65.54 Aligned_cols=109 Identities=8% Similarity=-0.061 Sum_probs=63.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC----CCC----HHHHHH
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PM----QPD----AVIWGS 565 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 565 (705)
+..+...+...|++++|...|+...+.. +.+...+..+..+|...|++++|...++++ .. .++ ..++..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3344444445555555555555444321 123444555555555566666665555554 11 122 556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAE 606 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 606 (705)
+...+...|++++|...++++++..| ++.....+..+...
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 77778888888888888888888887 45555555555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00019 Score=76.42 Aligned_cols=168 Identities=8% Similarity=-0.012 Sum_probs=138.1
Q ss_pred CCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhcc
Q 005265 440 GSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGY----------GTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHA 505 (705)
Q Consensus 440 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 505 (705)
...++|++.++.+.. .+..+|+.-...+...|+ ++++++.++++++ ..|.. .+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 345678888888763 356678877777777777 8999999999998 55655 5788888888888
Q ss_pred C--cHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 005265 506 G--LVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAG-CLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVH------ 573 (705)
Q Consensus 506 g--~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------ 573 (705)
| +++++++.++.+.+. .| +...|+.-..++.+.| .++++++.++++ ...| |..+|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8 779999999999865 44 4788888888888999 899999999988 5555 677898888776653
Q ss_pred --------CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhH
Q 005265 574 --------RNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGE 612 (705)
Q Consensus 574 --------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 612 (705)
+.++++.+.+.++++++|++..+|..+.+++.+.|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999998655
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.02 E-value=3.5e-05 Score=80.50 Aligned_cols=116 Identities=11% Similarity=0.094 Sum_probs=61.5
Q ss_pred HHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCc
Q 005265 432 LIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGL 507 (705)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~ 507 (705)
+...+.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++|++.+++.++ +.|+. .++..+..++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 3344556666666666666553 22455666666666666666666666666666 34433 355555566666666
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hhHHHHHHHH--HHhcCChHHHHHHHH
Q 005265 508 VEEGRKYFSSMSKEHGLAPL-KDHYTCMVDL--LGRAGCLDEAKTLIE 552 (705)
Q Consensus 508 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~ 552 (705)
+++|.+.|+++.+. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666655543 222 3333333333 555556666655555
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.5e-05 Score=82.73 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=90.6
Q ss_pred HhccCcHHHHHHHHHHhHHhcC--C---CCC-hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHH
Q 005265 502 CSHAGLVEEGRKYFSSMSKEHG--L---APL-KDHYTCMVDLLGRAGCLDEAKTLIEAM---------PMQPD-AVIWGS 565 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~~--~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 565 (705)
+...|++++|..++++...... + .|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456677777666665543221 1 222 556777888888888888888877765 23454 347888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh-----CCCCCch---HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEI-----EPSNSGP---YVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
|...|...|++++|+.++++++++ .|+++.+ ...|..++..+|++++|..+++++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999875 6776654 4578888999999999999999998743
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00098 Score=64.70 Aligned_cols=215 Identities=12% Similarity=0.060 Sum_probs=151.9
Q ss_pred hcccH-HHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCC----------HHHHHHHHHccC---CCChhHHHH
Q 005265 397 NLADL-QLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGS----------VEDGCRIFETMV---ERDWVSWNA 462 (705)
Q Consensus 397 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~---~~~~~~~~~ 462 (705)
+.|.+ ++|..+...++..++ .+..+|+.--..+...+. +++++.+++.+. .++..+|+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP-------~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~h 113 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANP-------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH 113 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCT-------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc-------hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34444 468888888887763 455566554444433333 578888888776 347788888
Q ss_pred HHHHHHHcCC--hHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCc-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 005265 463 MIVGCAQNGY--GTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGL-VEEGRKYFSSMSKEHGLAPLKDHYTCMVDLL 538 (705)
Q Consensus 463 li~~~~~~g~--~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 538 (705)
-...+...++ +++++.+++++.+. .| |..+|+.-..++...|. ++++++.++.+.+.. .-+...|+....++
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll 189 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
Confidence 8778888884 89999999999994 45 44577777777777787 689999999988652 23477787777766
Q ss_pred Hhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhCC
Q 005265 539 GRA--------------GCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVH-----------RNIMLGEYVAKKLLEIEP 591 (705)
Q Consensus 539 ~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p 591 (705)
.+. +.++++++.++.. ...| |...|+-+-..+... +.++++++.+++++++.|
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 655 4578899988877 3344 677887666655544 457899999999999999
Q ss_pred CCCchHHHHHHHH---HhcCChhHHHHHHHHHHh
Q 005265 592 SNSGPYVLLSNMY---AELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 592 ~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~ 622 (705)
++.-.+..++.+. ...|..++....+.++.+
T Consensus 270 d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 270 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 9844333333222 246778888889988875
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.00 E-value=3.1e-05 Score=77.85 Aligned_cols=64 Identities=14% Similarity=0.027 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 559 DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+..+|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4567888889999999999999999999999999999999999999999999999999999885
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.1e-05 Score=66.36 Aligned_cols=97 Identities=14% Similarity=-0.041 Sum_probs=54.4
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKTLIEAM-------PMQP-DAV 561 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~ 561 (705)
++..+...+...|++++|...++...+...-.++ ...+..+...+...|++++|.+.+++. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444455555555555555544322110111 334555566666666666666666554 1011 133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIE 590 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 590 (705)
++..+...+...|++++|.+.+++++++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56667777888888888888888887763
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.98 E-value=9.6e-05 Score=76.46 Aligned_cols=159 Identities=12% Similarity=0.002 Sum_probs=121.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCh----------------hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 005265 464 IVGCAQNGYGTEALGLFKKMLLCGEKPDH----------------VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL 527 (705)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 527 (705)
...+...|++++|++.|.++.+....... ..+..+...|...|++++|.+++..+.+..+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567889999999999999985322111 13677889999999999999999988765443333
Q ss_pred h----hHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------
Q 005265 528 K----DHYTCMVDLLGRAGCLDEAKTLIEAM-------PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEI------ 589 (705)
Q Consensus 528 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 589 (705)
. .+.+.+...+...|++++|.++++.. +..+. ..++..+...+...|++++|..+++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23444555667789999999988765 22333 457788888899999999999999999875
Q ss_pred CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 590 EPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 590 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.|....++..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 222334688999999999999999999998864
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.1e-05 Score=66.02 Aligned_cols=93 Identities=10% Similarity=0.032 Sum_probs=64.8
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005265 505 AGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEY 581 (705)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 581 (705)
.|++++|+..|++..+...-.|+ ...+..+..+|.+.|++++|+..|++. ...| +...+..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46677777777766532000233 566777778888888888888888776 3334 56677888888889999999999
Q ss_pred HHHHHHhhCCCCCchH
Q 005265 582 VAKKLLEIEPSNSGPY 597 (705)
Q Consensus 582 ~~~~~~~~~p~~~~~~ 597 (705)
.++++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 9999999988886543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.5e-05 Score=69.66 Aligned_cols=123 Identities=15% Similarity=-0.016 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-Chh
Q 005265 457 WVSWNAMIVGCAQNGYGTEALGLFKKMLLCG------EKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKD 529 (705)
Q Consensus 457 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~ 529 (705)
...+......+.+.|++++|+..|++.+..- -.|+...+ ..+ .| +..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~------~~~~~~ 64 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL------DRKNIP 64 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH------HHTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH------HHHHHH
Confidence 3456666677777777777777777766520 01111000 000 12 256
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-chHHHHHHHHH
Q 005265 530 HYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS-GPYVLLSNMYA 605 (705)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~ 605 (705)
.|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...++++++++|++. .....+..+..
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 7888888999999999999988887 3444 577888999999999999999999999999999987 44444444433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.7e-05 Score=78.89 Aligned_cols=147 Identities=10% Similarity=-0.088 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 005265 457 WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVD 536 (705)
Q Consensus 457 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 536 (705)
...|..+...+.+.|++++|+..|++.+. +.|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 44677777788888999999999998887 4565442 234445555443321 136778888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH-HhcCChhHH
Q 005265 537 LLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMY-AELGRWGEV 613 (705)
Q Consensus 537 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 613 (705)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++++++|++..++..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988887 3344 6778888888899999999999999999999999888888888884 445677778
Q ss_pred HHHHHHHHhC
Q 005265 614 VRVRKLMRKR 623 (705)
Q Consensus 614 ~~~~~~~~~~ 623 (705)
.+.+++|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888887654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.95 E-value=4.5e-05 Score=60.11 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 559 DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6778889999999999999999999999999999999999999999999999999999998875
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.92 E-value=1.5e-05 Score=67.53 Aligned_cols=114 Identities=15% Similarity=-0.024 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-CChhHHHHHHHH
Q 005265 459 SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLA-PLKDHYTCMVDL 537 (705)
Q Consensus 459 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~ 537 (705)
.+......+...|++++|+..|++.++ +.|+...- ++ .... .+...|..+..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~--------------~a----------~~~~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPE--------------EA----------FDHAGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTT--------------SC----------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcch--------------hh----------hhhccchHHHHHHHHHH
Confidence 455566667777777777777777777 44541100 00 0000 012255666666
Q ss_pred HHhcCChHHHHHHHHhC-C-------CCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 005265 538 LGRAGCLDEAKTLIEAM-P-------MQPD-AVIW----GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYV 598 (705)
Q Consensus 538 ~~~~g~~~~A~~~~~~~-~-------~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 598 (705)
+.+.|++++|+..+++. . +.|+ ...| .....++...|++++|+..|+++++++|++...+.
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 66666666666665554 3 3776 4577 88999999999999999999999999999877543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.7e-05 Score=77.40 Aligned_cols=153 Identities=10% Similarity=-0.023 Sum_probs=81.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 005265 425 DIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSH 504 (705)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 504 (705)
....+..+...+.+.|++++|...|++....+.... .+...++..++...+. ...|..+..++.+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 456677888999999999999999998753222111 1122333333333221 1367778888889
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCCHHHHH
Q 005265 505 AGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAA-CKVHRNIMLGE 580 (705)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~g~~~~a~ 580 (705)
.|++++|+..++...+. .| +...|..+..+|...|++++|+..|+++ .+.|+ ...+..+... ....+..+.+.
T Consensus 243 ~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988754 45 4788888999999999999999999988 55664 3445555444 34567778889
Q ss_pred HHHHHHHhhCCCCCc
Q 005265 581 YVAKKLLEIEPSNSG 595 (705)
Q Consensus 581 ~~~~~~~~~~p~~~~ 595 (705)
..|+++++..|.++.
T Consensus 320 ~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 320 EMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------
T ss_pred HHHHHhhCCCCCCCC
Confidence 999999999887653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.2e-05 Score=63.19 Aligned_cols=93 Identities=14% Similarity=-0.005 Sum_probs=74.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHH
Q 005265 527 LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN------SGPYV 598 (705)
Q Consensus 527 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 598 (705)
+...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777788888888888888888876 3334 67788888888999999999999999999999998 66777
Q ss_pred HHHHHHHhcCChhHHHHHHHH
Q 005265 599 LLSNMYAELGRWGEVVRVRKL 619 (705)
Q Consensus 599 ~l~~~~~~~g~~~~A~~~~~~ 619 (705)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888877776655543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.86 E-value=7.6e-05 Score=57.32 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
...+..+...+.+.|++++|+..+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777788888888888888776 2233 56678888888888999999999999999999988888888888887
Q ss_pred hcC
Q 005265 606 ELG 608 (705)
Q Consensus 606 ~~g 608 (705)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=1.1e-05 Score=68.24 Aligned_cols=84 Identities=13% Similarity=0.075 Sum_probs=62.3
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 005265 540 RAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRN----------IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAEL 607 (705)
Q Consensus 540 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 607 (705)
+.+++++|++.++.. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 334455555555554 2233 45555555555555443 56999999999999999999999999999987
Q ss_pred C-----------ChhHHHHHHHHHHhC
Q 005265 608 G-----------RWGEVVRVRKLMRKR 623 (705)
Q Consensus 608 g-----------~~~~A~~~~~~~~~~ 623 (705)
| ++++|++.|++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5 899999999999864
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.83 E-value=5.3e-05 Score=61.48 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=63.6
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 546 EAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 546 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+|++.|++. ...| +...|..+...+...|++++|...++++++.+|++...+..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555554 3344 5778888888899999999999999999999999988999999999999999999999998875
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.78 E-value=3.5e-05 Score=79.87 Aligned_cols=113 Identities=10% Similarity=-0.022 Sum_probs=85.9
Q ss_pred HHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCC---chHH
Q 005265 537 LLGRAGCLDEAKTLIEAM---------PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEI-----EPSNS---GPYV 598 (705)
Q Consensus 537 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~ 598 (705)
.+...|++++|+.++++. +..|+ ..+++.|...|...|++++|+.++++++++ .|+++ ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 466789999999998775 12343 447899999999999999999999999875 45554 4588
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHH
Q 005265 599 LLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREM 667 (705)
Q Consensus 599 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 667 (705)
.|+.+|..+|++++|+.++++..+.-.. .-...||...+....+.....++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~ 448 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMEL 448 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998753110 01157888887766666555433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00039 Score=55.57 Aligned_cols=66 Identities=9% Similarity=-0.009 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 558 PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 558 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
++...|..+...+...|++++|...++++++.+|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345678888889999999999999999999999999999999999999999999999999998853
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=6.4e-05 Score=76.76 Aligned_cols=116 Identities=10% Similarity=0.143 Sum_probs=87.2
Q ss_pred HHHHHhcCChHHHHHHHHhC-C-----CCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCC---ch
Q 005265 535 VDLLGRAGCLDEAKTLIEAM-P-----MQP---D-AVIWGSLLAACKVHRNIMLGEYVAKKLLEI-----EPSNS---GP 596 (705)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~~-~-----~~p---~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~ 596 (705)
+..+.+.|++++|++++++. . +.| + ..+++.|...|...|++++|+.++++++++ .|+++ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455677888888877655 1 222 2 347888888999999999999999999875 44444 45
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHHH
Q 005265 597 YVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMK 668 (705)
Q Consensus 597 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 668 (705)
+..|+.+|..+|++++|+.++++..+.-. . .-..+||...++...+.....+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-V-----------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-H-----------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999875211 0 112579999999998888888775
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0004 Score=53.38 Aligned_cols=69 Identities=14% Similarity=0.067 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 557 QPDAVIWGSLLAACKVHRN---IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 557 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
.+|+..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|+..|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567778888888654444 79999999999999999999999999999999999999999999997543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00051 Score=52.48 Aligned_cols=65 Identities=22% Similarity=0.252 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 559 DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35577888888999999999999999999999999999999999999999999999999998753
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00093 Score=56.09 Aligned_cols=111 Identities=5% Similarity=-0.049 Sum_probs=71.8
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 005265 507 LVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKV----HRNIMLGEYV 582 (705)
Q Consensus 507 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 582 (705)
++++|.++|+...+. + .|+. . |..+|...+..++|.+.|++.-...+...+..|...|.. .+++++|.+.
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455666666655433 2 2222 1 555555556666666666665223456666666666665 6777888888
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 005265 583 AKKLLEIEPSNSGPYVLLSNMYAE----LGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 583 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 625 (705)
|+++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8887766 455667888888888 7888888888888877664
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00011 Score=62.14 Aligned_cols=51 Identities=20% Similarity=0.185 Sum_probs=35.8
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhCCCCCc
Q 005265 545 DEAKTLIEAM-PMQP-DAVIWGSLLAACKVH-----------RNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 545 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
++|+..|++. .+.| +..+|..+..+|... |++++|.+.|+++++++|++..
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 3555555555 3344 344566666666554 5899999999999999999854
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0017 Score=68.95 Aligned_cols=148 Identities=13% Similarity=0.033 Sum_probs=122.2
Q ss_pred CChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCc----------HHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHH
Q 005265 471 GYGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAGL----------VEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLL 538 (705)
Q Consensus 471 g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 538 (705)
...++|++.+++++. +.|+.. .|+.--.++...|+ ++++++.++.+.+. .|. ..+|..-..++
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWLL 117 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 345688999999999 678765 45555555555566 89999999999865 454 78888888899
Q ss_pred HhcC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc------
Q 005265 539 GRAG--CLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHR-NIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAEL------ 607 (705)
Q Consensus 539 ~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 607 (705)
.+.| +++++++.++++ ...| |..+|+.-.......| .++++.+.++++++.+|.+..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 779999999998 3344 7889999888888888 899999999999999999999999999998885
Q ss_pred --------CChhHHHHHHHHHHhC
Q 005265 608 --------GRWGEVVRVRKLMRKR 623 (705)
Q Consensus 608 --------g~~~~A~~~~~~~~~~ 623 (705)
++++++.+.+++....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 5678999988888754
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0002 Score=72.88 Aligned_cols=82 Identities=10% Similarity=-0.003 Sum_probs=63.8
Q ss_pred cCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCC---chHHHHHH
Q 005265 541 AGCLDEAKTLIEAM---------PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEI-----EPSNS---GPYVLLSN 602 (705)
Q Consensus 541 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~ 602 (705)
.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.++++++++ .|+++ ..++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777776654 12333 347888888999999999999999999875 44444 45889999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 005265 603 MYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 603 ~~~~~g~~~~A~~~~~~~~~ 622 (705)
+|..+|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999875
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0011 Score=55.35 Aligned_cols=91 Identities=13% Similarity=0.109 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhC-C-CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCcee
Q 005265 558 PDAVIWGSLLAACKVHR---NIMLGEYVAKKLLEIE-P-SNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCS 632 (705)
Q Consensus 558 p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 632 (705)
++..+...+..++.+.+ +.++|..+++.+++.+ | ++...+..|+-+|.+.|++++|++.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~---------- 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ---------- 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh----------
Confidence 56666666666766666 5567777777777776 5 4456677777777788888888887777763
Q ss_pred EEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHHHHcCccc
Q 005265 633 WIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVP 674 (705)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~ 674 (705)
.+|...+.....+.+..++.+.|.+-
T Consensus 100 ----------------ieP~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 100 ----------------TEPQNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp ----------------HCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred ----------------cCCCCHHHHHHHHHHHHHHHHhhHHH
Confidence 35556666666666667777766543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0011 Score=53.49 Aligned_cols=80 Identities=13% Similarity=-0.005 Sum_probs=56.2
Q ss_pred HHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005265 511 GRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLL 587 (705)
Q Consensus 511 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 587 (705)
|+..|+...+ ..|+ ...+..+...|.+.|++++|+..|++. ...| +...|..+..++...|++++|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555543 3343 667777777777788888887777776 3333 46677778888888888888888888888
Q ss_pred hhCCCC
Q 005265 588 EIEPSN 593 (705)
Q Consensus 588 ~~~p~~ 593 (705)
++.|.+
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 877643
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0059 Score=59.46 Aligned_cols=142 Identities=13% Similarity=0.049 Sum_probs=73.4
Q ss_pred CCChhHHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 005265 454 ERDWVSWNAMIVGCA--QNG---YGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL 527 (705)
Q Consensus 454 ~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 527 (705)
..+...|...+.+.. ..+ ...+|..+|++.++ ..|+.. .+..+..++.. . ...+. .+
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~----------~----~~~~~-~~ 253 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV----------R----HSQHP-LD 253 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH----------H----HHHSC-CC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH----------H----hccCC-Cc
Confidence 447777877776643 233 34778999999988 678753 44444433330 0 00010 00
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAMP-MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAE 606 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 606 (705)
...... ...|.+....+. ...+..++..+...+...|++++|...+++++.++|+ ...|..++.++.-
T Consensus 254 ~~~~~~----------l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~ 322 (372)
T 3ly7_A 254 EKQLAA----------LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM 322 (372)
T ss_dssp HHHHHH----------HHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred hhhHHH----------HHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence 000000 112222222221 1234555555555555556666666666666666653 3445566666666
Q ss_pred cCChhHHHHHHHHHHhC
Q 005265 607 LGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 607 ~g~~~~A~~~~~~~~~~ 623 (705)
.|++++|.+.+++....
T Consensus 323 ~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 323 KGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 66666666666666543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0015 Score=50.78 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=35.2
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 005265 535 VDLLGRAGCLDEAKTLIEAM-PMQP-DAV-IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPY 597 (705)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 597 (705)
...+.+.|++++|++.|++. ...| +.. .|..+..++...|++++|...|+++++++|++...+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34455566666666666554 2233 334 555555556666666666666666666666655443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.13 E-value=4.9e-05 Score=75.07 Aligned_cols=237 Identities=14% Similarity=0.148 Sum_probs=151.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhC
Q 005265 84 NVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAG 163 (705)
Q Consensus 84 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 163 (705)
.+.+|..|..+..+.+++.+|++-| +...|+..|..+|....+.|.+++-++++....+..- ++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 3456888888888888888887655 3445777888899999999999888888776655422 33444678888888
Q ss_pred CCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC------------------------CCcch
Q 005265 164 SVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE------------------------RNIVS 219 (705)
Q Consensus 164 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~ 219 (705)
.+++.+-.+++. .|+..-...+.+-+...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 887654433321 35555556666666777777777777766542 46778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHH
Q 005265 220 WNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYA 299 (705)
Q Consensus 220 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 299 (705)
|..+-.+|...+.+.-|.-.--.+.- .||. ...++..|-..|.+++-+.+++..+.. -.....+++-|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHHHHHHHHHHHH
Confidence 99999999999888776544333321 1111 122344456667777766666665532 2455667777777777
Q ss_pred hcCChHHHHHHHhhC----CCC-------CcccHHHHHHHHHhcCCHHHHH
Q 005265 300 KCGKLNEARCVFDRM----PIR-------NVVSETSMVSGYAKASSVKSAR 339 (705)
Q Consensus 300 ~~g~~~~A~~~~~~~----~~~-------~~~~~~~li~~~~~~~~~~~A~ 339 (705)
+- ++++..+-++.. ..| ....|..++-.|++-..++.|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 65 344444443322 222 3345777777777777776553
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0082 Score=50.16 Aligned_cols=112 Identities=10% Similarity=-0.118 Sum_probs=89.2
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHH
Q 005265 471 GYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGR----AGCLDE 546 (705)
Q Consensus 471 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 546 (705)
+++++|+++|++..+.| .|+.. +...|...+.+++|.++|+...+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998876 33333 666677778888899999988653 467778888888888 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 005265 547 AKTLIEAMPMQPDAVIWGSLLAACKV----HRNIMLGEYVAKKLLEIEP 591 (705)
Q Consensus 547 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 591 (705)
|.+.|++.-..-++..+..|...|.. .++.++|.+.++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988334577888888888888 8899999999999988743
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0018 Score=65.87 Aligned_cols=92 Identities=12% Similarity=-0.055 Sum_probs=64.0
Q ss_pred cCcHHHHHHHHHHhHHhc--CCC---CC-hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 005265 505 AGLVEEGRKYFSSMSKEH--GLA---PL-KDHYTCMVDLLGRAGCLDEAKTLIEAM---------PMQPD-AVIWGSLLA 568 (705)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~ 568 (705)
.|++++|..++++..... -+. |+ ..+++.|..+|...|++++|+.+++++ +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666666666554321 112 22 456777778888888888888777765 23454 347888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhh-----CCCCCch
Q 005265 569 ACKVHRNIMLGEYVAKKLLEI-----EPSNSGP 596 (705)
Q Consensus 569 ~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~ 596 (705)
.|...|++++|+.++++++++ .|+++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999875 6777653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0026 Score=49.67 Aligned_cols=59 Identities=14% Similarity=0.154 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHh
Q 005265 458 VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSM 518 (705)
Q Consensus 458 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (705)
..|..+...|...|++++|+..|++.++ ..|+. ..|..+..++...|++++|.+.|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444444444444444444444 22322 23444444444444444444444443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0041 Score=63.38 Aligned_cols=96 Identities=13% Similarity=-0.049 Sum_probs=64.0
Q ss_pred HhccCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHH
Q 005265 502 CSHAGLVEEGRKYFSSMSKEH--GLAPL----KDHYTCMVDLLGRAGCLDEAKTLIEAM---------PMQPD-AVIWGS 565 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 565 (705)
+...|++++|..++++..... -+.|+ ..+++.|..+|...|++++|+.+++++ +..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445566666666666554321 11122 446667777777777777777777654 23344 346788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh-----CCCCCchH
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEI-----EPSNSGPY 597 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~ 597 (705)
|...|...|++++|+.++++++++ .|+++.+-
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 888899999999999999999875 67776543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0015 Score=64.83 Aligned_cols=391 Identities=11% Similarity=0.076 Sum_probs=239.4
Q ss_pred CCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCChhhHHHHHHHHH
Q 005265 17 LDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLL 96 (705)
Q Consensus 17 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 96 (705)
-|+..|..++.++.+.|.+++..+.+.-..+.. -++.+=+.|+-+|++.+++.+-++... .||+.-...+..-|.
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf 155 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCY 155 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHH
Confidence 578889999999999999999999877665553 444555789999999999776443322 277777777888888
Q ss_pred hcCChhHHHHHHhcCCC------------------------CCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChh
Q 005265 97 KWGFIDDASRLFASMPE------------------------RDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEY 152 (705)
Q Consensus 97 ~~g~~~~A~~~~~~~~~------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 152 (705)
..|.++.|.-+|..+.. .++.||..+-.+|...+.+.-|.-.--.+.- .+.
T Consensus 156 ~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----had 230 (624)
T 3lvg_A 156 DEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HAD 230 (624)
T ss_dssp HSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSS
T ss_pred HccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHH
Confidence 88888888888877641 3677999999999999988877655444432 122
Q ss_pred hHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC----C-------CcchHH
Q 005265 153 SFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE----R-------NIVSWN 221 (705)
Q Consensus 153 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-------~~~~~~ 221 (705)
-...++..|-..|.+++-..+++.-+.. -.....+++-|.-.|+|- +.++..+-++..-. | ....|.
T Consensus 231 eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ 308 (624)
T 3lvg_A 231 ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 308 (624)
T ss_dssp CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHH
Confidence 2345666788888888888888776632 134667888888888876 44554444433321 2 445699
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC-----------C---CCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCC
Q 005265 222 SLITCYEQNGPASDALEVFVRMMAS-----------G---IEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRND 287 (705)
Q Consensus 222 ~li~~~~~~g~~~~A~~~~~~m~~~-----------g---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 287 (705)
-++-.|.+..+++.|... |.+. . -..|...|--.+..|.... +..-.+++.-+... +.+
T Consensus 309 ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~-P~lL~DLL~vL~pr--lDh- 381 (624)
T 3lvg_A 309 ELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK-PLLLNDLLMVLSPR--LDH- 381 (624)
T ss_dssp HHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSC-CTTSHHHHHHHCTT--CCS-
T ss_pred HHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhC-hHHHHHHHHhcccc--CCh-
Confidence 999999999999877543 2211 0 1234444444444443221 11111111111000 111
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHH-HHHHHHHhcCCHHHHHHHHHhc------------CCCCeehHH
Q 005265 288 LVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSET-SMVSGYAKASSVKSARLMFTKM------------LERNVVSWN 354 (705)
Q Consensus 288 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~A~~~~~~~------------~~~~~~~~~ 354 (705)
+..++.+.+.|++.-....+..+...|...-| ++-..|....+++.-+...+.- .+....-+.
T Consensus 382 ----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFR 457 (624)
T 3lvg_A 382 ----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFR 457 (624)
T ss_dssp ----TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHH
T ss_pred ----HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHH
Confidence 12345555666666666666666555554444 4555666666665433332222 122222222
Q ss_pred -HHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHH
Q 005265 355 -ALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLI 433 (705)
Q Consensus 355 -~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li 433 (705)
+-...|.++++|++++.+.++ .+ .|.-.|...+.+++.+.+.++++..++.|- ...+.+.+
T Consensus 458 rIAA~LYkkn~rw~qsi~l~Kk---Dk------lykDAietAa~S~~~elaeeLL~yFv~~g~---------~EcF~a~L 519 (624)
T 3lvg_A 458 RIAAYLFKGNNRWKQSVELCKK---DS------LYKDAMQYASESKDTELAEELLQWFLQEEK---------RECFGACL 519 (624)
T ss_dssp HHHHHHHHTTCHHHHHSSCSST---TC------CTTGGGTTTTTCCCTTHHHHHHHHHHHHCS---------THHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHh---cc------cHHHHHHHHHHcCCHHHHHHHHHHHHHcCc---------hHHHHHHH
Confidence 234556778888888776432 11 222334556778888999999999888763 23444555
Q ss_pred HHHHhcCCHHHHHHH
Q 005265 434 DMYMKCGSVEDGCRI 448 (705)
Q Consensus 434 ~~~~~~g~~~~A~~~ 448 (705)
-.|...=+++-++++
T Consensus 520 ytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 520 FTCYDLLRPDVVLET 534 (624)
T ss_dssp HHTSSSSSCHHHHHH
T ss_pred HHHhhccChHHHHHH
Confidence 555555556666554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.005 Score=47.75 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=25.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hh-HHHHHHHHHHhcCChHHHHHHHHhC
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPL-KD-HYTCMVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 554 (705)
.+...|++++|...|+.+.+. .|+ .. .+..+..+|.+.|++++|.+.|++.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344455555555555554432 232 33 4555555555555555555555544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.019 Score=55.97 Aligned_cols=112 Identities=7% Similarity=-0.140 Sum_probs=66.2
Q ss_pred CCCChhhHHHHHHHHhc-----cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHH
Q 005265 488 EKPDHVTMIGVLCACSH-----AGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAV 561 (705)
Q Consensus 488 ~~p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~ 561 (705)
.+.+...|...+++... .....+|+.+|+++.+ +.|+ ...|..+..+|. .....+ ..+..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~----------~~~~~~-~~~~~ 255 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDI----------VRHSQH-PLDEK 255 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH----------HHHHHS-CCCHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHH----------HHhccC-CCchh
Confidence 34455677777765432 2335677888887764 3676 555555554444 011111 00111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
.... ...+.+. ...+...|.++.+|..++..+...|++++|...++++...+
T Consensus 256 ~~~~----------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 256 QLAA----------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp HHHH----------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hHHH----------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 1111 1122221 12335679999999999999988999999999999999875
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.16 Score=40.58 Aligned_cols=141 Identities=10% Similarity=0.024 Sum_probs=101.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDE 546 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 546 (705)
+.-.|..++..++..+.... .+..-++-++.-....-+-+-..++++.+-+-+. ...+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD--------------is~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD--------------LDKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC--------------GGGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcC--------------cHhhhcHHH
Confidence 34567788888888877763 2334555566555555556666666666533322 235677777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005265 547 AKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVV 626 (705)
Q Consensus 547 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 626 (705)
....+-.++ .+.......++....+|..++-.+++..++...|.++.....++.+|.+.|+..+|.+++.+.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 777776664 234445666788889999999999999987777778888999999999999999999999999999974
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.3 Score=54.65 Aligned_cols=129 Identities=13% Similarity=0.076 Sum_probs=83.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHH
Q 005265 292 NALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALG 371 (705)
Q Consensus 292 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 371 (705)
..++..+.+.|..+.|.++.+.- ..-.......|+++.|.++.+.+ .+...|..+...+.+.++++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHH
Confidence 66667777777777777655311 12233455678888888887665 345789999999999999999999
Q ss_pred HHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHc
Q 005265 372 LFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFET 451 (705)
Q Consensus 372 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (705)
.|.++.. |..+...+...++.+....+-+.....|. ++....+|.+.|++++|.+++.+
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 9987754 33444455556666665555555555443 23344456666777776665443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0095 Score=55.48 Aligned_cols=83 Identities=7% Similarity=0.049 Sum_probs=66.6
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhhCCCC-CchHHHHHHHHHhc-CChhH
Q 005265 544 LDEAKTLIEAM-PMQPD---AVIWGSLLAACKV-----HRNIMLGEYVAKKLLEIEPSN-SGPYVLLSNMYAEL-GRWGE 612 (705)
Q Consensus 544 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 612 (705)
..+|..++++. .+.|+ ...|..+...|.. -|+.++|++.|+++++++|+. ..++..++..++.. |++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666655 45666 4467777777777 499999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCc
Q 005265 613 VVRVRKLMRKRGVV 626 (705)
Q Consensus 613 A~~~~~~~~~~~~~ 626 (705)
|.+.+++.......
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999876554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.022 Score=45.56 Aligned_cols=88 Identities=13% Similarity=0.062 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhC-C-CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCcee
Q 005265 558 PDAVIWGSLLAACKVHRNIML---GEYVAKKLLEIE-P-SNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCS 632 (705)
Q Consensus 558 p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 632 (705)
|+..+-..+..++.+..+... ++.+++.+++.+ | ..-.....|+-++.+.|+|++|++..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~---------- 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ---------- 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----------
Confidence 455555555555555444333 666666665554 3 2334456666667777777777777766663
Q ss_pred EEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHHHHcC
Q 005265 633 WIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVG 671 (705)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g 671 (705)
.+|.+.++..+...+..+|.+.|
T Consensus 103 ----------------~eP~n~QA~~Lk~~i~~~i~kdG 125 (126)
T 1nzn_A 103 ----------------TEPQNNQAKELERLIDKAMKKDG 125 (126)
T ss_dssp ----------------HCTTCHHHHHHHHHHHHHHHHC-
T ss_pred ----------------hCCCCHHHHHHHHHHHHHHHhcc
Confidence 34555555665555666666655
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.031 Score=43.81 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 005265 530 HYTCMVDLLGRAGCLDEAKTLIEAM-----P----MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLL 600 (705)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 600 (705)
-.-.|...+.+.|++..|...|+.+ + -.+...++..|..++.+.|+++.|...+++++++.|++..+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3444555566666666666665554 0 123466788899999999999999999999999999997765444
Q ss_pred H
Q 005265 601 S 601 (705)
Q Consensus 601 ~ 601 (705)
.
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.14 Score=41.69 Aligned_cols=93 Identities=11% Similarity=0.021 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCC-CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCcee
Q 005265 557 QPDAVIWGSLLAACKVHR---NIMLGEYVAKKLLEIEPS-NSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCS 632 (705)
Q Consensus 557 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 632 (705)
.|+..+--.+..++.+.. +..+++.+++.+....|. .-.....|+-++.+.|+|++|+++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~---------- 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---------- 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh----------
Confidence 456666666666665544 456788888888887774 334567788888889999999888888874
Q ss_pred EEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHHHHcCcccC
Q 005265 633 WIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVPN 675 (705)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~~ 675 (705)
..|.+.++..+-..+..+|.+.|.+--
T Consensus 106 ----------------~eP~n~QA~~Lk~~Ie~~i~kdGliG~ 132 (144)
T 1y8m_A 106 ----------------HERNNKQVGALKSMVEDKIQKETLKGV 132 (144)
T ss_dssp ----------------TCCCCHHHHHHHHHHHHHHHHTTTTTC
T ss_pred ----------------cCCCcHHHHHHHHHHHHHHHHhchhhh
Confidence 356667777777777788888776543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.1 Score=58.58 Aligned_cols=149 Identities=15% Similarity=0.145 Sum_probs=91.2
Q ss_pred HhCCChHHHHH-HHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHH
Q 005265 127 AQHDRFSEALG-YFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCA 205 (705)
Q Consensus 127 ~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 205 (705)
...+++++|.+ ++..+ |+......++..+...|.++.|.++.+ +. ..-.......|+++.|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHHHH
Confidence 44666666655 33211 112222555556666666666665532 11 1113345677899999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 005265 206 RRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLR 285 (705)
Q Consensus 206 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 285 (705)
.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+....+-+.+...|
T Consensus 672 ~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~--- 737 (814)
T 3mkq_A 672 RDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG--- 737 (814)
T ss_dssp HHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT---
T ss_pred HHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC---
Confidence 98887764 456899999999999999999999988764 4445555555666666555555555544
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHH
Q 005265 286 NDLVLGNALVDMYAKCGKLNEARCVF 311 (705)
Q Consensus 286 ~~~~~~~~li~~~~~~g~~~~A~~~~ 311 (705)
-++....+|.+.|++++|.+++
T Consensus 738 ----~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 738 ----KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHH
T ss_pred ----chHHHHHHHHHcCCHHHHHHHH
Confidence 1233444566677777777444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.39 Score=41.06 Aligned_cols=130 Identities=12% Similarity=0.117 Sum_probs=86.1
Q ss_pred HHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHH
Q 005265 433 IDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGR 512 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 512 (705)
.+....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|++..+ +..+.-.|...|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34456788999998887766 4677899999999999999999999887654 445555566677776665
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005265 513 KYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKL 586 (705)
Q Consensus 513 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 586 (705)
++-+....+ | -++.....+.-.|+++++.++|.+.+.-|... -....+|..+.|.++.+.+
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 554433222 1 14555556677888888888888775322211 1133456666666665544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=2.4 Score=44.98 Aligned_cols=263 Identities=8% Similarity=0.000 Sum_probs=132.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhc---CCCCeehHHHHHHHHHHcCC
Q 005265 289 VLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKM---LERNVVSWNALIAGYTQNGE 365 (705)
Q Consensus 289 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~ 365 (705)
..-+.-+..+.+.+++......+.. ...+...-.....+....|+..+|......+ ....+..++.++..+.+.|.
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCC
Confidence 3334455566667777777765554 2223333334455555566655554544443 11233445555555554444
Q ss_pred hHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCc-HhHHHHHHHHHHhcCCHHH
Q 005265 366 NEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESD-IFVGNSLIDMYMKCGSVED 444 (705)
Q Consensus 366 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 444 (705)
..... ++.+| ......|+...|..+...+ +++ ......++..+. ++..
T Consensus 152 lt~~~-~~~R~----------------~~al~~~~~~~a~~l~~~l-----------~~~~~~~a~~~~al~~---~p~~ 200 (618)
T 1qsa_A 152 QDPLA-YLERI----------------RLAMKAGNTGLVTVLAGQM-----------PADYQTIASAIISLAN---NPNT 200 (618)
T ss_dssp SCHHH-HHHHH----------------HHHHHTTCHHHHHHHHHTC-----------CGGGHHHHHHHHHHHH---CGGG
T ss_pred CCHHH-HHHHH----------------HHHHHCCCHHHHHHHHHhC-----------CHHHHHHHHHHHHHHh---ChHh
Confidence 32211 11111 1222334444444443321 122 223333443333 2333
Q ss_pred HHHHHHccCCCChh---HHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChh--hHHHHHHHHhccCcHHHHHHHHHHh
Q 005265 445 GCRIFETMVERDWV---SWNAMIVGCAQNGYGTEALGLFKKMLLCG-EKPDHV--TMIGVLCACSHAGLVEEGRKYFSSM 518 (705)
Q Consensus 445 A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (705)
+....... .++.. .+...+.-+.+ .+.+.|...|....+.+ +.+... ....+.......+...++...+...
T Consensus 201 ~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~ 278 (618)
T 1qsa_A 201 VLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDA 278 (618)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHH
T ss_pred HHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhc
Confidence 34433332 22222 12222333333 47899999999887643 222221 2333333444555355666666654
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005265 519 SKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQP--DAVIWGSLLAACKVHRNIMLGEYVAKKLLE 588 (705)
Q Consensus 519 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 588 (705)
... .++.....-.+....+.|+++.|...|+.|+..+ ...-..-+..+....|+.++|..+|+++.+
T Consensus 279 ~~~---~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 279 IMR---SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccc---CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 332 2333333344445557899999999999996432 233334456677888999999999999875
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.045 Score=45.61 Aligned_cols=85 Identities=19% Similarity=0.078 Sum_probs=55.9
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHH
Q 005265 509 EEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAG---CLDEAKTLIEAM-PMQ-P--DAVIWGSLLAACKVHRNIMLGEY 581 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~~ 581 (705)
..+.+.|.+..+. + .++..+.-.+..++++++ +.++++.+++.. ... | +...+..|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3444444444332 2 245555555666666666 445666666655 212 4 34566677778899999999999
Q ss_pred HHHHHHhhCCCCCc
Q 005265 582 VAKKLLEIEPSNSG 595 (705)
Q Consensus 582 ~~~~~~~~~p~~~~ 595 (705)
.++.+++++|++..
T Consensus 93 y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHCTTCHH
T ss_pred HHHHHHhcCCCCHH
Confidence 99999999998854
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.079 Score=40.30 Aligned_cols=69 Identities=13% Similarity=0.040 Sum_probs=51.0
Q ss_pred CChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 526 PLKDHYTCMVDLLGRAGC---LDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 526 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
+++..+..+..++...++ .++|..++++. ...| +...+..+...+.+.|++++|...++++++.+|+++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 446677777777654444 68888888877 4455 455666677778889999999999999999888843
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.41 E-value=0.096 Score=42.05 Aligned_cols=89 Identities=11% Similarity=0.043 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCC-CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCcee
Q 005265 557 QPDAVIWGSLLAACKVHR---NIMLGEYVAKKLLEIEPS-NSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCS 632 (705)
Q Consensus 557 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 632 (705)
.|+..+--.+..++.+.. +..+|+.+++.+.+.+|. .-..+..|+-++.+.|++++|++..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~---------- 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---------- 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT----------
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh----------
Confidence 456666555666655544 445788888888887774 345677888888999999999999888873
Q ss_pred EEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHHHHcC
Q 005265 633 WIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVG 671 (705)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g 671 (705)
.+|.+.++...-..+..+|.+.|
T Consensus 107 ----------------~eP~N~QA~~Lk~~Ie~ki~kd~ 129 (134)
T 3o48_A 107 ----------------HERNNKQVGALKSMVEDKIQKEE 129 (134)
T ss_dssp ----------------TCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------hCCCCHHHHHHHHHHHHHHHhhc
Confidence 46677777777677777777655
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.22 Score=38.79 Aligned_cols=64 Identities=13% Similarity=-0.032 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------CCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 559 DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIE-------PSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+......+...+...|++..|..-++++++.. +....++..|+.+|.+.|++++|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44556678888999999999999999999862 23445789999999999999999999999874
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.10 E-value=1.4 Score=37.67 Aligned_cols=100 Identities=14% Similarity=0.109 Sum_probs=62.5
Q ss_pred hcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHH
Q 005265 331 KASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTH 410 (705)
Q Consensus 331 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 410 (705)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-..+-+.
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 344444444555544 3566788888888888888888888877654 33444445556666666655555
Q ss_pred HHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC
Q 005265 411 VVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV 453 (705)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 453 (705)
....|- ++.....+.-.|+++++.++|.+..
T Consensus 86 A~~~g~------------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 86 AQTRED------------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHTTC------------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHCcc------------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 555543 3344445556677777777776544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.67 E-value=0.23 Score=40.76 Aligned_cols=54 Identities=6% Similarity=-0.134 Sum_probs=44.5
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 572 VHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 572 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
..+|.++|.++|+.++++...-+..|...+..-.++|+...|++++.+....+.
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 447899999999999888655566778888888899999999999999886554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.16 Score=54.87 Aligned_cols=55 Identities=9% Similarity=-0.030 Sum_probs=51.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 567 LAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
...|...|+++.|+++.++++..-|.+..+|..|+.+|...|+|+.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3447789999999999999999999999999999999999999999999999885
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.11 Score=48.39 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=59.7
Q ss_pred HHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhc-----CChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-cCCH
Q 005265 509 EEGRKYFSSMSKEHGLAPL---KDHYTCMVDLLGRA-----GCLDEAKTLIEAM-PMQPD--AVIWGSLLAACKV-HRNI 576 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~g~~ 576 (705)
..|...+++.. .+.|+ ...|..+...|.+. |+.++|.+.|++. .+.|+ ..++......++. .|+.
T Consensus 180 ~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34444444443 34555 44566666666663 6777777777766 44552 5555556666555 4778
Q ss_pred HHHHHHHHHHHhhCCCC-CchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 577 MLGEYVAKKLLEIEPSN-SGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 577 ~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
+++.+.+++++...|.. +. ..+. ..++-.+|..++.++.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~--~~la----n~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPH--NKLL----VILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSS--CHHH----HHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCCCCC--hhHH----HHHHHHHHHHHHHHhH
Confidence 88888888888776653 22 1222 2334456666655543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.85 E-value=4.6 Score=38.35 Aligned_cols=144 Identities=9% Similarity=0.049 Sum_probs=81.8
Q ss_pred HHHHcCChHHHHH----HHHHhhhCCCCcchhhHHHHHHHHhhcc-----cHHHHHHHHHHHHHhCCCCCCCCCCcHhHH
Q 005265 359 GYTQNGENEEALG----LFRLLKRESVCPTHYTFGNLLNACANLA-----DLQLGRQAHTHVVKHGLRFLSGEESDIFVG 429 (705)
Q Consensus 359 ~~~~~g~~~~A~~----~~~~m~~~g~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (705)
.+.+.|+...|-+ +.+...+.+++++......++..+.... ..+-......+..+.|-. ...++...
T Consensus 62 ~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~----~~Gdp~LH 137 (312)
T 2wpv_A 62 SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEY----KFGDPYLH 137 (312)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSC----TTCCHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCC----CCCCHHHH
Confidence 3445555544443 3444455677777777777776665432 122233344444444321 14577888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC
Q 005265 430 NSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQN---GYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAG 506 (705)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 506 (705)
..+...|.+.|++.+|...|-.-...+...+-.++.-+... |...++--.. -..++ -|.-.|
T Consensus 138 ~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~--------------~RaVL-~yL~l~ 202 (312)
T 2wpv_A 138 NTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFF--------------SRLVF-NYLFIS 202 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH--------------HHHHH-HHHHTT
T ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHH--------------HHHHH-HHHHhc
Confidence 99999999999999999888633323455555555444443 4433322211 11222 344567
Q ss_pred cHHHHHHHHHHhHHh
Q 005265 507 LVEEGRKYFSSMSKE 521 (705)
Q Consensus 507 ~~~~a~~~~~~~~~~ 521 (705)
+...|..+|+...+.
T Consensus 203 n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 203 NISFAHESKDIFLER 217 (312)
T ss_dssp BHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888866543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.64 E-value=0.88 Score=36.36 Aligned_cols=71 Identities=18% Similarity=0.063 Sum_probs=47.6
Q ss_pred CChhHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 005265 526 PLKDHYTCMVDLLGRAGCLDE---AKTLIEAM-PMQ-P--DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP 596 (705)
Q Consensus 526 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 596 (705)
|+..+--.+..++.++.+..+ ++.+++.. ... | .......|.-++.+.|++++|.+.++.+++.+|++..+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 455555555566666665544 66666655 212 3 23345556667889999999999999999999988653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.90 E-value=3 Score=33.46 Aligned_cols=48 Identities=8% Similarity=-0.033 Sum_probs=25.8
Q ss_pred hhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHcc
Q 005265 396 ANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETM 452 (705)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 452 (705)
.-.|..+++.++..+..+.. +..-||.+|--....-+-+...++++.+
T Consensus 18 ildG~v~qGveii~k~~~ss---------ni~E~NW~ICNiiD~a~C~y~v~vLd~I 65 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---------TKSEYNWFICNLLESIDCRYMFQVLDKI 65 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---------CHHHHTHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---------CccccceeeeecchhhchhHHHHHHHHH
Confidence 34577888888888777643 3444444443333333444444444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.32 E-value=1.9 Score=35.48 Aligned_cols=38 Identities=13% Similarity=0.351 Sum_probs=28.5
Q ss_pred CCChhHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCh
Q 005265 454 ERDWVSWNAMIVGCAQNGYG------TEALGLFKKMLLCGEKPDH 492 (705)
Q Consensus 454 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~ 492 (705)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k 53 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDK 53 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccc
Confidence 45778888888888878888 7778888887774 66653
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=91.26 E-value=11 Score=36.14 Aligned_cols=142 Identities=11% Similarity=0.048 Sum_probs=76.2
Q ss_pred HHHcCChHHHHHH----HHHhhhCCCCcchhhHHHHHHHHhhccc--H---HHHHHHHHHHHHhCCCCCCCCCCcHhHHH
Q 005265 360 YTQNGENEEALGL----FRLLKRESVCPTHYTFGNLLNACANLAD--L---QLGRQAHTHVVKHGLRFLSGEESDIFVGN 430 (705)
Q Consensus 360 ~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (705)
+.+.|+...|-++ ++-..+.++++|..+...++..+..... + .-..+...+-.+.|.. ..-++....
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~----~~Gdp~LH~ 140 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDY----PAGDPELHH 140 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSC----TTCCHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCC----CCCCHHHHH
Confidence 4444554443333 3444556677777766666666654432 1 1122233333344420 145778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHH
Q 005265 431 SLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEE 510 (705)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 510 (705)
.+...|.+.+++.+|..-|-.-..+....+-.++.-+...+...++ |...-..++ -|.-.+++..
T Consensus 141 ~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL-~yL~l~n~~~ 205 (336)
T 3lpz_A 141 VVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL-PYLLVANVRA 205 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH-HHHHTTCHHH
T ss_pred HHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH-HHHHhCCHHH
Confidence 8999999999999999888532222335665554444443322211 112222222 3455678888
Q ss_pred HHHHHHHhHH
Q 005265 511 GRKYFSSMSK 520 (705)
Q Consensus 511 a~~~~~~~~~ 520 (705)
|..+++...+
T Consensus 206 A~~~~~~f~~ 215 (336)
T 3lpz_A 206 ANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777665543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.27 E-value=26 Score=38.90 Aligned_cols=260 Identities=11% Similarity=0.029 Sum_probs=128.9
Q ss_pred HHHhcCChHHHHHHHhhCCCC----Ccc--cHHHHHHHHHhcCCHHHHHHHHHhcCC-CC----------eehHHHHHHH
Q 005265 297 MYAKCGKLNEARCVFDRMPIR----NVV--SETSMVSGYAKASSVKSARLMFTKMLE-RN----------VVSWNALIAG 359 (705)
Q Consensus 297 ~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~li~~~~~~~~~~~A~~~~~~~~~-~~----------~~~~~~li~~ 359 (705)
+....|+.++++.++...... +.. .-..+.-++...|..+++..++..... .+ ...-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 455677777788877776642 111 112233445556655566665555432 12 1112223333
Q ss_pred HHHcCC-hHHHHHHHHHhhhCCCCcchhhHH--HHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHH-
Q 005265 360 YTQNGE-NEEALGLFRLLKRESVCPTHYTFG--NLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDM- 435 (705)
Q Consensus 360 ~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~- 435 (705)
++-.|. -+++.+.+..+....- +...... .+-..+...|+.+....++..+.+.. +..+...++-+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---------~e~vrR~aalgL 532 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---------HGNITRGLAVGL 532 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---------CHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---------cHHHHHHHHHHH
Confidence 333332 2456666666554321 1111111 12222345567666677776665421 22233333333
Q ss_pred -HHhcCCHHHHHHHHHccCC-CChh-HHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHH
Q 005265 436 -YMKCGSVEDGCRIFETMVE-RDWV-SWN---AMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVE 509 (705)
Q Consensus 436 -~~~~g~~~~A~~~~~~~~~-~~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 509 (705)
+.-.|+.+.+..+++.+.. .+.. -|. ++.-+|+..|+.....++++.+.+. ...+......+.-++...|+.+
T Consensus 533 Gll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 533 ALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCS
T ss_pred HhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHH
Confidence 3356777777777666542 3332 233 2344567778876666688877764 1222222222222344456655
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhCCCCCCHHHHHHHHHH
Q 005265 510 EGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCL-DEAKTLIEAMPMQPDAVIWGSLLAA 569 (705)
Q Consensus 510 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~ 569 (705)
.+.++++.+.+ ...|.+..-.++.-+....|.. .+|.+++..+...+|..+-..-+-+
T Consensus 612 ~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 612 TVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp SHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 56666665533 2245555444444444445443 6777788777556666555444444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.50 E-value=1.4 Score=33.08 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=37.8
Q ss_pred hhHHHHHHHhccCCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005265 3 TQRSVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDV 63 (705)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 63 (705)
+++-+..+....+-|++......|++|.|.+++..|.++++-+...- .....+|..+++-
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 45555666666666777777777777777777777777777664332 2334456655553
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=89.04 E-value=18 Score=35.69 Aligned_cols=161 Identities=9% Similarity=-0.014 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCC--------CChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCChhhH---
Q 005265 428 VGNSLIDMYMKCGSVEDGCRIFETMVE--------RDWVSWNAMIVGCAQN-GYGTEALGLFKKMLLCGEKPDHVTM--- 495 (705)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~--- 495 (705)
....|...|.+.|+.++..+++..... +.......++..+... +..+.-.++..+.++.. +-+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 445688888999999988888877642 1333455666666653 33344445554444321 0112233
Q ss_pred ---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-----CCCCCHHHH
Q 005265 496 ---IGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKTLIEAM-----PMQPDAVIW 563 (705)
Q Consensus 496 ---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~ 563 (705)
..+...|...|++.+|.+++..+.+...-..+ ..++..-+.+|...|++.++...+... .+.|++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 14667788888888888888888765432112 445666677888888888888887665 122343332
Q ss_pred H--HHHHH--HH-hcCCHHHHHHHHHHHHhh
Q 005265 564 G--SLLAA--CK-VHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 564 ~--~l~~~--~~-~~g~~~~a~~~~~~~~~~ 589 (705)
. -..++ +. ..+++..|...|-++.+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 2 22222 55 678888888888777643
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=88.96 E-value=26 Score=37.10 Aligned_cols=141 Identities=5% Similarity=-0.075 Sum_probs=73.6
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC-CCh-hhHHHHHHHHHhc
Q 005265 21 PFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN-KNV-FTWNSIITGLLKW 98 (705)
Q Consensus 21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~li~~~~~~ 98 (705)
.|....++. +.|++..+..+-..+....+.|-. .|..|...+ ......+....+++-+. |-. ..-+.-+..+.+.
T Consensus 9 ~~~~a~~a~-~~~~~~~~~~l~~~l~~~pL~~yl-~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~ 85 (618)
T 1qsa_A 9 RYAQIKQAW-DNRQMDVVEQMMPGLKDYPLYPYL-EYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARR 85 (618)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHSGGGTTSTTHHHH-HHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHhhcCCCcHHHH-HHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhC
Confidence 344444444 457777666665554332222221 222222222 12244555555555443 211 2234456667778
Q ss_pred CChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCC
Q 005265 99 GFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVD 166 (705)
Q Consensus 99 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 166 (705)
+++...+..+.. +..+...--....+....|+..+|......+-..|. ..+..+..++..+...|.
T Consensus 86 ~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 86 EDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGK 151 (618)
T ss_dssp TCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTC
T ss_pred CCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCC
Confidence 888888887766 333443334456667777887778777777766553 234455555555554443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.63 E-value=17 Score=34.50 Aligned_cols=114 Identities=11% Similarity=0.076 Sum_probs=69.7
Q ss_pred hHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHH----HHHHHHCCCCCCHhHHHHHHHHHH
Q 005265 188 MGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEV----FVRMMASGIEPDEVTLASVVSACA 263 (705)
Q Consensus 188 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 263 (705)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|.++ ++...+.+++++..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345556668888888888887644 33445667776665554 455556788888877777776664
Q ss_pred ccC--C---hHHHHHHHHHHHHcCC-CCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 005265 264 SLA--A---FKEGLQIHARLMRCEK-LRNDLVLGNALVDMYAKCGKLNEARCVFD 312 (705)
Q Consensus 264 ~~~--~---~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 312 (705)
... . .+-..+...+..+.|+ ..-|+.....+...|.+.|++.+|+.-|-
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 422 1 1222233333333332 23466677777788888888888876554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.08 E-value=2.2 Score=35.88 Aligned_cols=123 Identities=15% Similarity=0.032 Sum_probs=61.6
Q ss_pred CCCCCCh--hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-------hhHHHHHHHHHHhcCChHHHHHHHHhC--
Q 005265 486 CGEKPDH--VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-------KDHYTCMVDLLGRAGCLDEAKTLIEAM-- 554 (705)
Q Consensus 486 ~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 554 (705)
.|+.|.. .++..-+..+...|.++.|+-+.+.+....+..|+ ..++..+.+++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3555543 34555566677777777777766655433222333 124555666777777777777776663
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 555 -----PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 555 -----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.-.|+. ..++. . .... ..-.. .+.+...-..++.+|.+.|++++|+.+++.+..
T Consensus 92 ~~k~l~k~~s~--~~~~~-~---~ss~-------p~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 92 QKKALSKTSKV--RPSTG-N---SAST-------PQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHCC---------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHhcCCCc--ccccc-c---cCCC-------ccccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 111111 00000 0 0000 00000 112223456799999999999999999987653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.54 E-value=3.6 Score=34.54 Aligned_cols=28 Identities=7% Similarity=0.087 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAMP 555 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 555 (705)
.+.---+..+|.+.|++++|+.+++..+
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 3444446667777777777777777775
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.09 E-value=1.8 Score=43.16 Aligned_cols=68 Identities=12% Similarity=0.004 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCccCCc
Q 005265 563 WGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK-----RGVVKQPG 630 (705)
Q Consensus 563 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 630 (705)
...++..+...|+++++...+..++..+|-+...|..++.+|.+.|+..+|++.|+...+ .|+.|.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 345667778889999999999999999999999999999999999999999999988754 37766553
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.23 E-value=8.9 Score=28.75 Aligned_cols=58 Identities=21% Similarity=0.165 Sum_probs=36.3
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhH
Q 005265 328 GYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTF 388 (705)
Q Consensus 328 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 388 (705)
.+...|++++|..+.+...-||...|-++.. .+.|..+++...+.++...| .|....|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3445555555557766666777777765543 36677777777777776665 4444444
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=85.88 E-value=18 Score=31.90 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=6.9
Q ss_pred chhhHHHHHHHHHccCC
Q 005265 53 EIFIQNRLIDVYAKCGC 69 (705)
Q Consensus 53 ~~~~~~~ll~~~~~~g~ 69 (705)
+..+-...+..+++.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333334444444443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.44 E-value=34 Score=39.66 Aligned_cols=143 Identities=15% Similarity=0.058 Sum_probs=82.0
Q ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC----C--------
Q 005265 389 GNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER----D-------- 456 (705)
Q Consensus 389 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-------- 456 (705)
..++..+...+..+.+.++.... +.+....-.+..+|..+|++++|.+.|.+.... +
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~ 884 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLRE 884 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcc
Confidence 34555566666666666544322 344444456677888999999999999876421 0
Q ss_pred --------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--h--hHHHHHHHHhccCcHHHHHHHHHHh
Q 005265 457 --------------WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH--V--TMIGVLCACSHAGLVEEGRKYFSSM 518 (705)
Q Consensus 457 --------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~--~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (705)
..-|.-++..+.+.+.++.++++-+..++..-.-+. . .|..+..++...|++++|-..+-.+
T Consensus 885 ~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 885 FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 012455566666677777777666665553211111 1 3556666666777777776666555
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChH
Q 005265 519 SKEHGLAPLKDHYTCMVDLLGRAGCLD 545 (705)
Q Consensus 519 ~~~~~~~p~~~~~~~l~~~~~~~g~~~ 545 (705)
... .-.......|+..++..|..+
T Consensus 965 pd~---~~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 965 STT---PLKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHS---SSCHHHHHHHHHHHHHHCCHH
T ss_pred CCH---HHHHHHHHHHHHHHHhCCChh
Confidence 321 122445555665555555443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.17 E-value=8.2 Score=28.88 Aligned_cols=58 Identities=17% Similarity=0.046 Sum_probs=36.4
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhH
Q 005265 328 GYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTF 388 (705)
Q Consensus 328 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 388 (705)
.+...|++++|..+.+...-||...|-++.. .+.|..+++...+.++...| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3445555555556666666677777765543 46787888877777777666 4444444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.56 E-value=6.2 Score=29.76 Aligned_cols=62 Identities=11% Similarity=0.178 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHH
Q 005265 233 ASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVD 296 (705)
Q Consensus 233 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 296 (705)
.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-+...- .+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 34566667777777889999999999999999999999999998877653 333456666654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.49 E-value=17 Score=29.63 Aligned_cols=71 Identities=10% Similarity=-0.007 Sum_probs=46.0
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 525 APLKDHYTCMVDLLGRAGCLD---EAKTLIEAM-PMQP--DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 525 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
.|+..+--.+..++.++.+.+ +++.+++.. ...| .......|.-++.+.|++++|.+..+.+++.+|++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 344444444555555555433 455555554 1123 2334555666799999999999999999999999854
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=83.47 E-value=22 Score=30.96 Aligned_cols=75 Identities=8% Similarity=0.081 Sum_probs=32.3
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc
Q 005265 186 VYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACAS 264 (705)
Q Consensus 186 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 264 (705)
..+-...+.++.+.|+.+....+...+..++...-...+.++.+.|. .++...+..+... ++...-...+.++.+
T Consensus 121 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 121 WFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 33333334444444443333333333334444444555555555544 3344455554432 344444444444443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.02 E-value=9.1 Score=41.45 Aligned_cols=51 Identities=16% Similarity=-0.050 Sum_probs=40.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHh
Q 005265 466 GCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSM 518 (705)
Q Consensus 466 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (705)
-+...|+++-|+++-++... ..|+. .+|..|..+|...|+++.|+-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 35567888888888888877 66776 48888888888888888888877766
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.65 E-value=4.6 Score=32.28 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=28.6
Q ss_pred hHHHHHHHhccCCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHH
Q 005265 4 QRSVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLID 62 (705)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 62 (705)
++-+.++....+-|++......|++|.|.+++..|.++++-+...- .+...+|..+++
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3344444444455555555555555555555555555555543221 222334444443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=82.39 E-value=27 Score=40.51 Aligned_cols=65 Identities=3% Similarity=-0.127 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc-----hHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 561 VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG-----PYVLLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
.-|..++..+.+++.++.+.+..+.+++..+.+.. .|..+...+...|+|++|...+-.+.+...
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 34667777788999999999999999987543322 467788889999999999999988876543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.58 E-value=47 Score=33.49 Aligned_cols=26 Identities=12% Similarity=0.046 Sum_probs=13.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHH
Q 005265 425 DIFVGNSLIDMYMKCGSVEDGCRIFE 450 (705)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~ 450 (705)
...+...++..+...|+++...+.+.
T Consensus 55 ~~r~l~~iv~l~~~~~~~~~l~e~i~ 80 (445)
T 4b4t_P 55 SKEVLAKIVDLLASRNKWDDLNEQLT 80 (445)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34455555555666666555544433
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=81.15 E-value=9.9 Score=37.71 Aligned_cols=68 Identities=10% Similarity=0.140 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhH
Q 005265 461 NAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLVEEGRKYFSSMSK----EHGLAPLKDH 530 (705)
Q Consensus 461 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 530 (705)
..++..+...|++.+|+..+..+.. ..| +...+..++.++...|+..+|++.|+...+ +.|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455666677777777777777766 334 445777777777777777777777766543 3466666544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 705 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 1e-05
Identities = 29/225 (12%), Positives = 76/225 (33%), Gaps = 10/225 (4%)
Query: 390 NLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIF 449
N A +NL + + + H + ++ + + + +L ++ + + +
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226
Query: 450 ETMVERDWV---SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVL-CACSHA 505
+ + + G A+ +++ + +P L A
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI--ELQPHFPDAYCNLANALKEK 284
Query: 506 GLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIE-AMPMQPD-AVIW 563
G V E +++ + D + ++ G ++EA L A+ + P+ A
Sbjct: 285 GSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342
Query: 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELG 608
+L + + + K+ + I P+ + Y + N E+
Sbjct: 343 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 4e-04
Identities = 34/211 (16%), Positives = 73/211 (34%), Gaps = 10/211 (4%)
Query: 408 HTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERD---WVSWNAMI 464
L+ + + + ++L ++ G + FE V D ++ +
Sbjct: 151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210
Query: 465 VGCAQNGYGTEALGLFKKML-LCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHG 523
+ A+ + + L L + C GL++ + +
Sbjct: 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA--CVYYEQGLIDLAIDTYRRAIELQP 268
Query: 524 LAPLKDHYTCMVDLLGRAGCLDEAKTLIE-AMPMQPDAVIWGSLLAACKVHR-NIMLGEY 581
P D Y + + L G + EA+ A+ + P + LA K + NI
Sbjct: 269 HFP--DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326
Query: 582 VAKKLLEIEPSNSGPYVLLSNMYAELGRWGE 612
+ +K LE+ P + + L+++ + G+ E
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 705 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.55 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.12 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.05 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.01 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.0 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.98 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.98 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.97 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.96 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.9 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.81 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.72 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.59 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.59 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.58 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.54 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.49 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.47 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.45 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.45 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.41 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.39 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.37 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.36 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.32 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.28 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.22 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.2 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.14 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.12 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.12 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.12 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.02 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.97 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.85 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.83 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.78 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.77 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.77 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.74 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.72 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.59 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.53 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.51 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.48 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.31 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.18 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.05 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.96 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.21 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.19 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.54 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.26 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.19 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.89 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.41 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.34 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.44 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.8 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.5e-20 Score=191.10 Aligned_cols=369 Identities=13% Similarity=0.089 Sum_probs=263.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCC
Q 005265 225 TCYEQNGPASDALEVFVRMMASGIEP-DEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGK 303 (705)
Q Consensus 225 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 303 (705)
..+.+.|++++|++.|+++.+. .| +...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|+
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhhcc
Confidence 3344555566666666555543 23 23444455555555566666666666655542 3344555556666666666
Q ss_pred hHHHHHHHhhCCCC---CcccHHHHHHHHHhcCCHHHHHHHHHhc---CCCCeehHHHHHHHHHHcCChHHHHHHHHHhh
Q 005265 304 LNEARCVFDRMPIR---NVVSETSMVSGYAKASSVKSARLMFTKM---LERNVVSWNALIAGYTQNGENEEALGLFRLLK 377 (705)
Q Consensus 304 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 377 (705)
+++|...+...... +...+..........+....+....... ..................+....+...+....
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence 66666555554321 1122222222222222222222222222 23344455556666777788888888877776
Q ss_pred hCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---C
Q 005265 378 RESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---E 454 (705)
Q Consensus 378 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~ 454 (705)
... +-+...+..+...+...++++.|...+....+.. +.+..++..+...+...|++++|...+++.. .
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 234 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-------cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh
Confidence 543 2344566677778888899999999999888876 4677888999999999999999999998765 3
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 005265 455 RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTC 533 (705)
Q Consensus 455 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 533 (705)
.+...|..+...+.+.|++++|+..|++.++ +.|+. .++..+..++...|++++|.+.++..... .+.+...+..
T Consensus 235 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 310 (388)
T d1w3ba_ 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNN 310 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhH
Confidence 4677888899999999999999999999998 56765 57888899999999999999999988654 3445788899
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005265 534 MVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGR 609 (705)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 609 (705)
+..++.+.|++++|++.|++. ...| +..+|..+...+...|++++|...|+++++++|+++.+|..|+.+|.+.|+
T Consensus 311 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999986 5566 466888899999999999999999999999999999999999999999886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=5.3e-20 Score=187.05 Aligned_cols=370 Identities=15% Similarity=0.110 Sum_probs=299.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHhcCC
Q 005265 258 VVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMP---IRNVVSETSMVSGYAKASS 334 (705)
Q Consensus 258 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~ 334 (705)
+...+.+.|++++|.+.+.++++.. |.+..++..+...|.+.|++++|...|++.. +.+..+|..+...|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence 3455678899999999999999874 5678889999999999999999999999875 3356778889999999999
Q ss_pred HHHHHHHHHhcCCC---CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHH
Q 005265 335 VKSARLMFTKMLER---NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHV 411 (705)
Q Consensus 335 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 411 (705)
+++|...+...... +...+..........+....+........... .................+....+...+...
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 99999999888542 33444455555566666666666666555443 233334444555566677777888887777
Q ss_pred HHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 005265 412 VKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGE 488 (705)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 488 (705)
.... +.+...+..+...+...|++++|...+++.. ..+..+|..+...+...|++++|+..+++....+
T Consensus 162 ~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 233 (388)
T d1w3ba_ 162 IETQ-------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS- 233 (388)
T ss_dssp HHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-
T ss_pred hccC-------cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-
Confidence 7665 4567888889999999999999999998765 3467789999999999999999999999998842
Q ss_pred CCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHH
Q 005265 489 KPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM--PMQPDAVIWGS 565 (705)
Q Consensus 489 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 565 (705)
..+...+..+...+...|++++|...|+++.+ +.|+ ...+..+..+|...|++++|++.++.. ..+.+...+..
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 310 (388)
T d1w3ba_ 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhH
Confidence 23445777888899999999999999998865 3565 788999999999999999999999987 23457788889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEeEEee
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMV 645 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (705)
+...+...|++++|...++++++++|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 311 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------------- 367 (388)
T d1w3ba_ 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR----------------------- 367 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT-----------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------
Confidence 999999999999999999999999999999999999999999999999999999873
Q ss_pred CCcCCCChhHHHHHHHHHHHHH
Q 005265 646 KDKRHPLNKEIYLVLKMLTREM 667 (705)
Q Consensus 646 ~~~~~~~~~~~~~~l~~l~~~~ 667 (705)
.+|...+++..+..++.+|
T Consensus 368 ---l~P~~~~a~~~lg~~~~~~ 386 (388)
T d1w3ba_ 368 ---ISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp ---TCTTCHHHHHHHHHHHHHT
T ss_pred ---hCCCCHHHHHHHHHHHHHc
Confidence 3566666777777666654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.2e-13 Score=135.70 Aligned_cols=227 Identities=16% Similarity=0.099 Sum_probs=152.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHH
Q 005265 355 ALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLID 434 (705)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 434 (705)
.....+.+.|++++|+..|+++++.. +-+..++..+..++...|+++.|...+..+++.. +.+..
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~------- 88 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-------PDNQT------- 88 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHH-------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-------ccccc-------
Confidence 34555666666666666666666542 1123344444444455555555555555544443 22334
Q ss_pred HHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh----------------HHHH
Q 005265 435 MYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVT----------------MIGV 498 (705)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----------------~~~l 498 (705)
.|..+...|...|++++|.+.+++... ..|+... ....
T Consensus 89 ------------------------~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (323)
T d1fcha_ 89 ------------------------ALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEGAGGAGLGPSKRI 142 (323)
T ss_dssp ------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC---------------CT
T ss_pred ------------------------ccccccccccccccccccccchhhHHH--hccchHHHHHhhhhhhhhcccccchhh
Confidence 444444455555555555555555444 2222110 1111
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005265 499 LCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNI 576 (705)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 576 (705)
+..+...+...+|.+.+....+...-.++...+..+...+...|++++|+..|++. ...| +..+|..+...+...|++
T Consensus 143 ~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 222 (323)
T d1fcha_ 143 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS 222 (323)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccc
Confidence 22334456678888888877655333445778888999999999999999999987 3344 577889999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 577 MLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 577 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
++|.+.++++++++|+++.++..++.+|.+.|++++|++.+++..+
T Consensus 223 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 223 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=4.4e-13 Score=131.60 Aligned_cols=267 Identities=12% Similarity=0.022 Sum_probs=193.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--C-CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhc
Q 005265 322 ETSMVSGYAKASSVKSARLMFTKMLE--R-NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANL 398 (705)
Q Consensus 322 ~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 398 (705)
+-.....+.+.|++++|...|+++.+ | +..+|..+...|...|++++|+..|.+..+.. +-+...+..+..++...
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 33456678999999999999999854 3 45689999999999999999999999988754 22456777788889999
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHH
Q 005265 399 ADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALG 478 (705)
Q Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 478 (705)
|+++.|.+.+..+..... .............. ..+.......+..+...+.+.+|.+
T Consensus 101 ~~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTP-------AYAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKE 157 (323)
T ss_dssp TCHHHHHHHHHHHHHTST-------TTGGGCC-------------------------------CTTHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhcc-------chHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHH
Confidence 999999999999887653 11111100000000 0011111112233445566788888
Q ss_pred HHHHHHHCCC-CCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 005265 479 LFKKMLLCGE-KPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-P 555 (705)
Q Consensus 479 ~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 555 (705)
.|.+.++... .++...+..+...+...|++++|+..|+..... .|+ ...|..+..+|.+.|++++|.+.|+++ .
T Consensus 158 ~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 234 (323)
T d1fcha_ 158 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALE 234 (323)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHH
Confidence 8888877321 223456777888899999999999999988754 455 788999999999999999999999987 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch-----------HHHHHHHHHhcCChhHHHH
Q 005265 556 MQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP-----------YVLLSNMYAELGRWGEVVR 615 (705)
Q Consensus 556 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~ 615 (705)
..| +..+|..+..+|...|++++|...|+++++++|++..+ +..+..++...|+.+.+..
T Consensus 235 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 235 LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455 57789999999999999999999999999998887653 3456667777777765543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=9.5e-09 Score=101.29 Aligned_cols=266 Identities=12% Similarity=-0.012 Sum_probs=188.3
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCCCcc----hhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHH
Q 005265 356 LIAGYTQNGENEEALGLFRLLKRESVCPT----HYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNS 431 (705)
Q Consensus 356 li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (705)
....+...|++++|+.++++..+.....+ ...+..+..++...|+++.|...+..+.+..... .........+..
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-DVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-cchHHHHHHHHH
Confidence 34556788888888888888776431111 1345556677788888888888888776543210 000112345566
Q ss_pred HHHHHHhcCCHHHHHHHHHccCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC----ChhhHH
Q 005265 432 LIDMYMKCGSVEDGCRIFETMVE-------R----DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP----DHVTMI 496 (705)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~ 496 (705)
+...+...|++..|...+..... + ....+..+...+...|+++.+...+.......... ...++.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 77888899999999888876531 1 12355667788899999999999999988743222 223455
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-----CHHHHHH
Q 005265 497 GVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-----KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-----DAVIWGS 565 (705)
Q Consensus 497 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ 565 (705)
.....+...+....+...+............ ...+..+...+...|++++|...++.. ...| ....+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 5566777888999888887766543222211 334566677889999999999999987 2222 2456677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh------CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEI------EPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+...+...|++++|...+++++.. .|.....+..++.+|...|++++|.+.+++..+
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888899999999999999999854 345556788999999999999999999998764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=2e-09 Score=103.79 Aligned_cols=192 Identities=7% Similarity=0.088 Sum_probs=161.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCh-hhHHHHHH
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNG-YGTEALGLFKKMLLCGEKPDH-VTMIGVLC 500 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~ 500 (705)
..+++.+...+.+.+..++|+++++++.+ .+..+|+....++...| ++++|+..+++.++ +.|+. .+|.....
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhH
Confidence 45667777888899999999999999863 36778999888888876 48999999999998 66765 58888899
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRN-- 575 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~-- 575 (705)
.+...|++++|++.++.+.+. .|+ ...|..+..++.+.|++++|++.++.+ ...| +...|+.+...+...+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~---dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQ---DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHhhccHHHHHHHHhhhhhh---hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccc
Confidence 999999999999999998754 565 889999999999999999999999998 5555 67788877766655544
Q ss_pred ----HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 576 ----IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 576 ----~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+++|...+.++++++|++...|..++.++...| .+++.+.++...+.
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL 248 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence 688999999999999999999999998876655 57888888887653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=5.6e-09 Score=97.85 Aligned_cols=219 Identities=10% Similarity=-0.063 Sum_probs=133.9
Q ss_pred hHHHHHHHHHhhhCCC-Cc--chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCH
Q 005265 366 NEEALGLFRLLKRESV-CP--THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSV 442 (705)
Q Consensus 366 ~~~A~~~~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 442 (705)
.+.++.-+++...... .+ ...++..+-.++.+.|+++.|...|...++.. +.++.+++.+..+|.+.|++
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-------p~~~~a~~~lg~~~~~~g~~ 87 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAGNF 87 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-------CCCHHHHhhhchHHHHHHHH
Confidence 3455555555554321 11 12345555666777788888888888877766 46777888888888888888
Q ss_pred HHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHh
Q 005265 443 EDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSM 518 (705)
Q Consensus 443 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (705)
++|+..|+++.+ .+..+|..+...|...|++++|...|++.++. .|+. .....+..++...+..+....+....
T Consensus 88 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (259)
T d1xnfa_ 88 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 165 (259)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 888888887752 35667888888888888899999888888873 4543 33333333444555555555554444
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCC----hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005265 519 SKEHGLAPLKDHYTCMVDLLGRAGC----LDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS 592 (705)
Q Consensus 519 ~~~~~~~p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 592 (705)
.. ..+....++. +..+..... .+.+...+... ...|+ ..+|..+...+...|++++|...|+++++.+|+
T Consensus 166 ~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 166 EK---SDKEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp HH---SCCCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred hc---cchhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 32 2222222222 222222211 22222221111 11222 336667777888899999999999999999998
Q ss_pred CCchH
Q 005265 593 NSGPY 597 (705)
Q Consensus 593 ~~~~~ 597 (705)
+...|
T Consensus 242 ~~~~~ 246 (259)
T d1xnfa_ 242 NFVEH 246 (259)
T ss_dssp TCHHH
T ss_pred CHHHH
Confidence 76544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=1.5e-07 Score=92.42 Aligned_cols=273 Identities=8% Similarity=-0.084 Sum_probs=164.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCC----hhHHHHH
Q 005265 223 LITCYEQNGPASDALEVFVRMMASGIEPD----EVTLASVVSACASLAAFKEGLQIHARLMRCEKLRND----LVLGNAL 294 (705)
Q Consensus 223 li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l 294 (705)
....+...|++++|++++++..+.....+ ...+..+...+...|++++|...+..+++...-.++ ...+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34456677788888888877766421111 124455556667778888888887777653211111 2344556
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCC----eehHHHHHHHHHHcCChHHHH
Q 005265 295 VDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERN----VVSWNALIAGYTQNGENEEAL 370 (705)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~ 370 (705)
...+...|++..+...+... ..+......+. ...+..+...+...|+++.+.
T Consensus 98 ~~~~~~~~~~~~a~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~ 153 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKA------------------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 153 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------------HHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhH
Confidence 66777778877777655432 23333322221 124555677788899999999
Q ss_pred HHHHHhhhCC----CCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 005265 371 GLFRLLKRES----VCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGC 446 (705)
Q Consensus 371 ~~~~~m~~~g----~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 446 (705)
..+....... ......++......+...++...+...+....................+..+...+...|+++.|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 233 (366)
T d1hz4a_ 154 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 233 (366)
T ss_dssp HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHH
Confidence 8888876532 222233445555566777888888777766654322100000112334556667777888888888
Q ss_pred HHHHccCCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCh-hhHHHHHHHHhccCcHHHHHHH
Q 005265 447 RIFETMVER-------DWVSWNAMIVGCAQNGYGTEALGLFKKMLL----CGEKPDH-VTMIGVLCACSHAGLVEEGRKY 514 (705)
Q Consensus 447 ~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~ 514 (705)
..++..... ....+..+...+...|++++|...+++.+. .+..|+. .++..+..++...|++++|.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 313 (366)
T d1hz4a_ 234 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 313 (366)
T ss_dssp HHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 888776532 223455667778888888888888877653 2344443 3556666667777777777777
Q ss_pred HHHhH
Q 005265 515 FSSMS 519 (705)
Q Consensus 515 ~~~~~ 519 (705)
+++..
T Consensus 314 l~~Al 318 (366)
T d1hz4a_ 314 LLDAL 318 (366)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76553
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.98 E-value=7.1e-08 Score=92.61 Aligned_cols=187 Identities=12% Similarity=0.042 Sum_probs=137.7
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-C-hhHHHHHHHHHHHcCChH
Q 005265 399 ADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE--R-D-WVSWNAMIVGCAQNGYGT 474 (705)
Q Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~ 474 (705)
+..+.+..+++..++... +.+...+...+..+.+.|+++.|..+|+++.. + + ...|...+..+.+.|+.+
T Consensus 78 ~~~~~a~~i~~ral~~~~------p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (308)
T d2onda1 78 LFSDEAANIYERAISTLL------KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK 151 (308)
T ss_dssp HHHHHHHHHHHHHHTTTT------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHH
T ss_pred cchHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChH
Confidence 345778888888876554 56677888888888889999999999988653 2 3 346888888888888999
Q ss_pred HHHHHHHHHHHCCCCCCh-hhHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 005265 475 EALGLFKKMLLCGEKPDH-VTMIGVLC-ACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIE 552 (705)
Q Consensus 475 ~A~~~~~~m~~~g~~p~~-~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 552 (705)
.|.++|+++++. .|+. ..|..... -+...|+.+.|..+|+.+.+.+ +.+...|...++.+.+.|+++.|..+|+
T Consensus 152 ~ar~i~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe 227 (308)
T d2onda1 152 SGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp HHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 999999988874 3332 23333332 2344678888999988887653 3346778888888888888888888888
Q ss_pred hC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 553 AM----PMQP--DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 553 ~~----~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
+. +..| ....|...+..-..+|+.+.+..+++++.+..|....
T Consensus 228 ~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 228 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 76 2333 2457888888778888888888888888888776643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=1.3e-08 Score=98.03 Aligned_cols=211 Identities=10% Similarity=0.135 Sum_probs=137.4
Q ss_pred hhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHHccC---CCChhHHHHHHHHHHHcC
Q 005265 396 ANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCG-SVEDGCRIFETMV---ERDWVSWNAMIVGCAQNG 471 (705)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 471 (705)
.+.+..++|.+++..+++.. +.+..+|+....++...| ++++|+..++... ..+..+|+.+...+...|
T Consensus 54 ~~~e~~~~Al~~~~~ai~ln-------P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~ 126 (315)
T d2h6fa1 54 QRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR 126 (315)
T ss_dssp HHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HhCCchHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhc
Confidence 33444455555555555544 456666777777766655 4777777777664 346667777777777788
Q ss_pred ChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC------
Q 005265 472 YGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGC------ 543 (705)
Q Consensus 472 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~------ 543 (705)
++++|++.++++++ +.|+ ...|..+...+...|++++|++.++.+.+. .|+ ...|+.+..++.+.|.
T Consensus 127 ~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 127 DPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp CCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred cHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccchhhh
Confidence 88888888888877 4554 357777777777888888888888877643 454 6667666666665554
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc--hHHHHHHHHHhc--CChhHHHHHH
Q 005265 544 LDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG--PYVLLSNMYAEL--GRWGEVVRVR 617 (705)
Q Consensus 544 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~--g~~~~A~~~~ 617 (705)
+++|++.+..+ ...| +...|+.+...+.. ...+++.+.+++++++.|+... .+..++.+|... +..+.+...+
T Consensus 202 ~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~ 280 (315)
T d2h6fa1 202 LEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 280 (315)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred hHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 56777777665 4445 56677777665544 4467888999999888776544 345667776543 4444444444
Q ss_pred HH
Q 005265 618 KL 619 (705)
Q Consensus 618 ~~ 619 (705)
++
T Consensus 281 ~k 282 (315)
T d2h6fa1 281 NK 282 (315)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=4.2e-09 Score=98.72 Aligned_cols=193 Identities=12% Similarity=0.006 Sum_probs=141.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHH
Q 005265 425 DIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLC 500 (705)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~ 500 (705)
...++..+..+|.+.|++++|+..|++.. ..++.+|+.+..+|...|++++|++.|+++++ +.|+. .++..+..
T Consensus 36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~ 113 (259)
T d1xnfa_ 36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGI 113 (259)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHH
Confidence 34577788899999999999999999876 34788999999999999999999999999999 56765 47888888
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH----HhcC
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIWGSLLAAC----KVHR 574 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~----~~~g 574 (705)
++...|++++|...|+...+. .|+ ......+...+.+.+..+.+..+.... ...++...+. ++..+ ...+
T Consensus 114 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 189 (259)
T d1xnfa_ 114 ALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQT 189 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh-HHHHHHHHHHHHH
Confidence 999999999999999988765 343 444444455556666655555544433 1122222222 12222 1223
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 575 NIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 575 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
..+.+...+.......|....+|..++.+|...|++++|.+.+++..+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 190 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3455555555555666777778899999999999999999999998853
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.96 E-value=1.8e-09 Score=105.59 Aligned_cols=192 Identities=7% Similarity=-0.084 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCcHhHH-HHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHHcCChHHH
Q 005265 401 LQLGRQAHTHVVKHGLRFLSGEESDIFVG-NSLIDMYMKCGSVEDGCRIFETMVER---DWVSWNAMIVGCAQNGYGTEA 476 (705)
Q Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 476 (705)
.+.+...+..+..... ++...+ ......+...+..++|+..++.+.+. +..+|+.+...+...|++++|
T Consensus 125 ~~~a~~~~~~al~~~~-------~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A 197 (334)
T d1dcea1 125 WARELELCARFLEADE-------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (334)
T ss_dssp HHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHHHHhhCc-------hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHH
Confidence 4555555555555442 344443 33445666677888888888777643 566777777788888877777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 005265 477 LGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-P 555 (705)
Q Consensus 477 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 555 (705)
...+++..+ +.|+.. .....+...+..+++...+...... -.+....+..++..+...|+.++|...+.+. .
T Consensus 198 ~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 270 (334)
T d1dcea1 198 GPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKELQELEP 270 (334)
T ss_dssp SSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 655554444 222221 1222334445556666666655432 2233555666777888889999999988876 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 005265 556 MQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAE 606 (705)
Q Consensus 556 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 606 (705)
..| +..+|..+...+...|++++|.+.++++++++|.+...|..|...+.-
T Consensus 271 ~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 271 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 455 455778888889999999999999999999999988888888877764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.90 E-value=9.7e-08 Score=91.63 Aligned_cols=179 Identities=9% Similarity=0.033 Sum_probs=143.0
Q ss_pred CCHHHHHHHHHccC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhccCcHHHHHH
Q 005265 440 GSVEDGCRIFETMV----ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD--HVTMIGVLCACSHAGLVEEGRK 513 (705)
Q Consensus 440 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~ 513 (705)
+..++|..+|++.. ..+...|...+..+...|+.+.|..+|+++++ ..|. ...|...+..+.+.|+.+.|++
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~--~~~~~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HhcCChHHHHHHHHHHHHHcCChHHHHH
Confidence 34578888988764 33667889999999999999999999999998 4454 3468889999999999999999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHH-HHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005265 514 YFSSMSKEHGLAPLKDHYTCMVDL-LGRAGCLDEAKTLIEAM-P-MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIE 590 (705)
Q Consensus 514 ~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 590 (705)
+|+.+.+.. +.+...|...+.. +...|+.+.|..+|+.+ . .+.+...|...+..+...|+++.|+.+|+++++..
T Consensus 156 i~~~al~~~--~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 156 IFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 999887542 2234555555444 34468999999999988 2 23467889999999999999999999999999987
Q ss_pred CCCCc----hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 591 PSNSG----PYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 591 p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
|.++. .|...+..-...|+.+.+.++.+++.+
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75543 577777777888999999999998865
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.81 E-value=1.7e-09 Score=105.90 Aligned_cols=244 Identities=9% Similarity=-0.037 Sum_probs=177.0
Q ss_pred HcCChHHHHHHHHHhhhCCCCcchhhH-H---HHHHH-------HhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHH
Q 005265 362 QNGENEEALGLFRLLKRESVCPTHYTF-G---NLLNA-------CANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGN 430 (705)
Q Consensus 362 ~~g~~~~A~~~~~~m~~~g~~p~~~t~-~---~ll~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (705)
..+..++|+.++++.++. .|+..+. + .++.. +...+.++.+...++.+.+.. +.+...+.
T Consensus 41 ~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-------pk~~~~~~ 111 (334)
T d1dcea1 41 AGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-------PKSYGTWH 111 (334)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHH
T ss_pred cccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-------CCcHHHHH
Confidence 334457899999888764 4665442 2 12222 233456788999999988876 46777777
Q ss_pred HHHHHHHhcC--CHHHHHHHHHccCC---CChhHHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHh
Q 005265 431 SLIDMYMKCG--SVEDGCRIFETMVE---RDWVSWNA-MIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACS 503 (705)
Q Consensus 431 ~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 503 (705)
.+..++...+ ++++|...+.++.+ ++...|.. ....+...+++++|+..++++++ ..|+. ..|..+..++.
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~--~~p~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH--cCCCCHHHHHHHHHHHH
Confidence 7777766665 48899999988753 35566654 44667778999999999999888 55654 57888888888
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005265 504 HAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM--PMQPDAVIWGSLLAACKVHRNIMLGEY 581 (705)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~ 581 (705)
..|++++|...++...+. .|. ...+...+...+..+++...+... ...++...+..+...+...|+.++|..
T Consensus 190 ~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 263 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK 263 (334)
T ss_dssp HHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHH
Confidence 888888877666544332 122 122334455667777777777665 223345556667777888899999999
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 582 VAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 582 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+.+.++.+|++..++..++.+|...|++++|.+.+++..+
T Consensus 264 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999875
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=8.9e-08 Score=76.43 Aligned_cols=89 Identities=17% Similarity=0.136 Sum_probs=73.6
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChh
Q 005265 534 MVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWG 611 (705)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 611 (705)
-...+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.++...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 356677788888888888877 3344 56778888888888899999999999999989998888999999999999999
Q ss_pred HHHHHHHHHHh
Q 005265 612 EVVRVRKLMRK 622 (705)
Q Consensus 612 ~A~~~~~~~~~ 622 (705)
+|+..+++..+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999888874
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.59 E-value=1.3e-07 Score=84.37 Aligned_cols=95 Identities=12% Similarity=0.013 Sum_probs=48.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005265 527 LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMY 604 (705)
Q Consensus 527 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 604 (705)
+...+...+..|.+.|++++|+..|+++ ...| +...|..+..+|...|++++|+..|+++++++|+++.+|..++.+|
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3333444444555555555555555443 2222 3444555555555555555555555555555555555555555555
Q ss_pred HhcCChhHHHHHHHHHH
Q 005265 605 AELGRWGEVVRVRKLMR 621 (705)
Q Consensus 605 ~~~g~~~~A~~~~~~~~ 621 (705)
.+.|++++|...+++..
T Consensus 83 ~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 83 LEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55555555555555544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=3.3e-07 Score=77.90 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=66.5
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChh
Q 005265 534 MVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWG 611 (705)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 611 (705)
....|.+.|++++|+..|+++ ...| +...|..+..++...|++++|...|+++++++|++..+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 345666777777777777776 3334 56677777777778888888888888888888888777888888888888888
Q ss_pred HHHHHHHHHHh
Q 005265 612 EVVRVRKLMRK 622 (705)
Q Consensus 612 ~A~~~~~~~~~ 622 (705)
+|.+.+++...
T Consensus 96 eA~~~~~~a~~ 106 (159)
T d1a17a_ 96 AALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=8.1e-07 Score=77.89 Aligned_cols=140 Identities=6% Similarity=-0.150 Sum_probs=103.3
Q ss_pred HHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHH
Q 005265 433 IDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEG 511 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a 511 (705)
...+...|+++.|++.|.++..++..+|..+...|...|++++|++.|++.++ +.|+. ..|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 55677889999999999998888888899999999999999999999999988 56665 4788888888899999999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005265 512 RKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIE 590 (705)
Q Consensus 512 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 590 (705)
...|+...... +++... .|...|. ..+++ ..++..+..++...|++++|.+.+++++++.
T Consensus 90 ~~~~~kAl~~~--~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQL--RGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHTT--TTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC--ccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 98888775421 111100 0000000 01111 2456667777888999999999999999888
Q ss_pred CCC
Q 005265 591 PSN 593 (705)
Q Consensus 591 p~~ 593 (705)
|..
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 875
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=5.9e-07 Score=71.49 Aligned_cols=105 Identities=15% Similarity=0.027 Sum_probs=87.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC
Q 005265 498 VLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQ-PDAVIWGSLLAACKVHR 574 (705)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g 574 (705)
-...+...|++++|+..|+...+. .|+ ...|..+..+|.+.|++++|+..++.+ .+. .+...|..+..++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 345677788888888888888754 454 778888889999999999999998887 333 46788999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 575 NIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 575 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
++++|...++++++++|+++.++..+..+..
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999988887777654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.54 E-value=1.1e-07 Score=75.16 Aligned_cols=89 Identities=13% Similarity=0.018 Sum_probs=79.6
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCh
Q 005265 533 CMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRW 610 (705)
Q Consensus 533 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 610 (705)
.+...+.+.|++++|+..|++. ...| +..+|..+..++...|++++|+..++++++++|+++.++..++.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 3566788889999999999887 4455 5788999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH
Q 005265 611 GEVVRVRKLMR 621 (705)
Q Consensus 611 ~~A~~~~~~~~ 621 (705)
++|.+.+++..
T Consensus 101 ~~A~~~l~~~l 111 (112)
T d1hxia_ 101 NAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=6.3e-07 Score=78.61 Aligned_cols=88 Identities=11% Similarity=0.068 Sum_probs=81.8
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHH
Q 005265 535 VDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVV 614 (705)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 614 (705)
...+...|++++|++.|+++. +|+..+|..+...+...|++++|++.|+++++++|+++.+|..++.+|.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 456788999999999999875 6788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 005265 615 RVRKLMRKR 623 (705)
Q Consensus 615 ~~~~~~~~~ 623 (705)
+.+++....
T Consensus 91 ~~~~kAl~~ 99 (192)
T d1hh8a_ 91 KDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=1.7e-06 Score=74.08 Aligned_cols=62 Identities=8% Similarity=-0.063 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 561 VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+|+.+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 35666777788889999999999999999999888899999999999999999999988875
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.45 E-value=4.3e-07 Score=80.76 Aligned_cols=115 Identities=7% Similarity=-0.138 Sum_probs=80.3
Q ss_pred CChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 005265 490 PDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSL 566 (705)
Q Consensus 490 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 566 (705)
|+...+......+...|++++|+..|+.+... .|+ ...|..+..+|.+.|++++|+..|+++ .+.| +..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 55555666666777777777777777766543 344 667777777788888888888877776 5556 46677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 005265 567 LAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAEL 607 (705)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 607 (705)
..++...|++++|...++++++++|++...+...++.+...
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~ 119 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 88888888888888888888888776555444444444443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=1.1e-06 Score=74.53 Aligned_cols=115 Identities=10% Similarity=-0.009 Sum_probs=91.0
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005265 499 LCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRN 575 (705)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 575 (705)
...|.+.|++++|...|+++.+. .|+ ...|..+..+|...|++++|+..|+++ .+.| +..+|..+..++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 44567888888888888877654 454 778888888888889999998888887 4455 56789999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHH--HhcCChhHHHHH
Q 005265 576 IMLGEYVAKKLLEIEPSNSGPYVLLSNMY--AELGRWGEVVRV 616 (705)
Q Consensus 576 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~ 616 (705)
+++|...++++++++|+++.++..+..+. ...+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999988887776664 344556666554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=1.5e-06 Score=82.13 Aligned_cols=192 Identities=7% Similarity=-0.050 Sum_probs=131.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hh
Q 005265 428 VGNSLIDMYMKCGSVEDGCRIFETMVE-----RD----WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGE---KPD--HV 493 (705)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 493 (705)
.|....++|...|++++|.+.|.+..+ .+ ..+|+.+..+|.+.|++++|++.+++..+.-. .+. ..
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 345567778899999999999987742 12 35788899999999999999999998766211 111 23
Q ss_pred hHHHHHHHHh-ccCcHHHHHHHHHHhHHhc---CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-------CH
Q 005265 494 TMIGVLCACS-HAGLVEEGRKYFSSMSKEH---GLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-------DA 560 (705)
Q Consensus 494 ~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~ 560 (705)
++..+...|. ..|++++|.+.++...+-. +..+. ..++..+...|...|++++|.+.|+++ ...| ..
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 5566666664 4699999999998875432 21222 456788899999999999999999986 1111 11
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch-----HHHHHHHHHh--cCChhHHHHHHHH
Q 005265 561 -VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP-----YVLLSNMYAE--LGRWGEVVRVRKL 619 (705)
Q Consensus 561 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~~A~~~~~~ 619 (705)
..+...+-.+...|+++.|...++++.+++|....+ ...++.++.. .+++++|+..|++
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 223444455778899999999999999998764432 3445555554 3567888887754
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.39 E-value=3.6e-06 Score=70.53 Aligned_cols=83 Identities=16% Similarity=0.065 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEE
Q 005265 561 VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHV 640 (705)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (705)
.++..+..+|.+.|++++|.+.++++++++|.+..+|..++.+|...|++++|...+++..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~------------------ 129 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS------------------ 129 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH------------------
Confidence 46677888899999999999999999999999999999999999999999999999999874
Q ss_pred eEEeeCCcCCCChhHHHHHHHHHHHHHHH
Q 005265 641 NVFMVKDKRHPLNKEIYLVLKMLTREMKR 669 (705)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 669 (705)
.+|...++...+..+..++.+
T Consensus 130 --------l~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 130 --------LNPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp --------HSTTCHHHHHHHHHHHHHHHH
T ss_pred --------hCCCCHHHHHHHHHHHHHHHH
Confidence 356667777777777777754
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=4.4e-07 Score=72.44 Aligned_cols=105 Identities=17% Similarity=0.023 Sum_probs=73.8
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCCCH---HHHHHHH
Q 005265 496 IGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCL---DEAKTLIEAM-PMQPDA---VIWGSLL 567 (705)
Q Consensus 496 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p~~---~~~~~l~ 567 (705)
..+++.+...+++++|.+.|+...+. .| +..++..+..++.+.++. ++|+.+++++ ...|+. .+|..+.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 45677777888888888888877653 34 367777777777765544 4588888776 334433 2667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 005265 568 AACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNM 603 (705)
Q Consensus 568 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 603 (705)
.+|.+.|++++|++.|+++++++|++..+...+..+
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 778888888888888888888888876655544443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.4e-06 Score=69.36 Aligned_cols=92 Identities=8% Similarity=-0.037 Sum_probs=42.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCCC---hhHHHHHH
Q 005265 463 MIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAG---LVEEGRKYFSSMSKEHGLAPL---KDHYTCMV 535 (705)
Q Consensus 463 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~ 535 (705)
+++.+...+++++|.+.|++.+. ..|+. .++..+..++.+.+ ++++|+.+++.+.+ ..|+ ..++..+.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~---~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP---KGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT---TSCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh---ccCCchHHHHHHHHH
Confidence 44445555555555555555555 33332 34444444444322 23345555554432 1222 12344455
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCC
Q 005265 536 DLLGRAGCLDEAKTLIEAM-PMQPD 559 (705)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~~-~~~p~ 559 (705)
.+|.+.|++++|++.|+++ .+.|+
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~ 104 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQ 104 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcC
Confidence 5555555555555555554 33443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=3.6e-06 Score=71.93 Aligned_cols=134 Identities=12% Similarity=-0.000 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 005265 458 VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDL 537 (705)
Q Consensus 458 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 537 (705)
..+......+.+.|++++|+..|++.++. .|....+ .. .. ......+ ...+|+.+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~~---------~~--~~-~~~~~~~--------~~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF---------SN--EE-AQKAQAL--------RLASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC---------CS--HH-HHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcccc---------ch--HH-Hhhhchh--------HHHHHHHHHHH
Confidence 34555667788889999999999888773 2221110 00 00 0111111 12356778889
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHH
Q 005265 538 LGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEV 613 (705)
Q Consensus 538 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 613 (705)
|.+.|++++|+..++.. .+.| ++.+|..+..++...|++++|...|+++++++|+++.+...+..+..+.+...+.
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 4455 7888999999999999999999999999999999999999999988777666554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.28 E-value=3.5e-05 Score=72.39 Aligned_cols=198 Identities=9% Similarity=-0.051 Sum_probs=109.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhC----CCCc-chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHh
Q 005265 353 WNALIAGYTQNGENEEALGLFRLLKRE----SVCP-THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIF 427 (705)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 427 (705)
|......|...|++++|...|.+..+. +-.| -..+|..+..+|.+.|++++|...+....+..... +.......
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~ 118 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-GQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc-ccchhHHH
Confidence 344566677777777777777766542 1122 22466777777788888888888877665432100 00011234
Q ss_pred HHHHHHHHHHh-cCCHHHHHHHHHccCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----
Q 005265 428 VGNSLIDMYMK-CGSVEDGCRIFETMVE-----R----DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH----- 492 (705)
Q Consensus 428 ~~~~li~~~~~-~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----- 492 (705)
++..+...|.. .|++++|++.+++..+ . -..+|..+...|...|++++|+..|+++.........
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 45555666643 5888888887776531 1 1234666777777777777777777777663211110
Q ss_pred -hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC------hhHHHHHHHHHHh--cCChHHHHHHHHhC
Q 005265 493 -VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL------KDHYTCMVDLLGR--AGCLDEAKTLIEAM 554 (705)
Q Consensus 493 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 554 (705)
..+...+..+...|+++.|...++...+ +.|. ......++.++.. .+.+++|+.-|+++
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~---~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 0122333344556777777777775542 2332 1223344444443 23466666666655
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=5e-07 Score=92.71 Aligned_cols=205 Identities=8% Similarity=-0.042 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChh---HHHHHHHHHHHcCChHHHHHH
Q 005265 403 LGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWV---SWNAMIVGCAQNGYGTEALGL 479 (705)
Q Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~ 479 (705)
+|.+.++++.+.. +.....+..+..+|...|++++| |+++...|+. .++.. ...-...+..+.+.
T Consensus 4 eA~q~~~qA~~l~-------p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e--~~Lw~~~y~~~ie~ 71 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-------ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVE--QDLWNHAFKNQITT 71 (497)
T ss_dssp HHHHHHHHHHHHH-------GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHH--HHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHcC-------CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHH--HHHHHHHHHHHHHH
Confidence 3556666665543 12334445566667777777766 4444322221 11111 11101124567777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHH--hccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 005265 480 FKKMLLCGEKPDHVTMIGVLCAC--SHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMPM 556 (705)
Q Consensus 480 ~~~m~~~g~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 556 (705)
++...+....|+..-....+..+ ...+.++.++..++ +.+++.|+ ...+..+...+.+.|+.++|...++..-
T Consensus 72 ~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~---~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al- 147 (497)
T d1ya0a1 72 LQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELC---TVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC- 147 (497)
T ss_dssp HHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---C-------------------------------CCHHH-
T ss_pred HHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHh-
Confidence 77777654445544332222222 23445556655554 33455555 6677888888999999999987766541
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 557 QPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 557 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
.++ ..++..+...+...|++++|...|+++++++|++..+|..||.++...|+..+|...+.+....
T Consensus 148 ~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~ 215 (497)
T d1ya0a1 148 SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 122 3467788888999999999999999999999999999999999999999999999999988753
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.22 E-value=5.4e-06 Score=70.90 Aligned_cols=64 Identities=14% Similarity=0.027 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 559 DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|++.+++..+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 3446777788888999999999999999999999999999999999999999999999998885
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.20 E-value=1.6e-05 Score=67.69 Aligned_cols=61 Identities=8% Similarity=-0.023 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+|+.+..++.+.|++++|+..++++++++|++..+|..++.+|...|++++|.+.++++.+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666778888888888888888888888888888888888888888888888888774
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.14 E-value=0.0003 Score=64.73 Aligned_cols=180 Identities=12% Similarity=-0.037 Sum_probs=109.8
Q ss_pred CCHHHHHHHHHccCCC-ChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHH-HHHHHHhccCcHHHHHH
Q 005265 440 GSVEDGCRIFETMVER-DWVSWNAMIVGCAQ----NGYGTEALGLFKKMLLCGEKPDHVTMI-GVLCACSHAGLVEEGRK 513 (705)
Q Consensus 440 g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~ 513 (705)
.+...|...+.....+ +...+..+...+.. ..+.+.|...++...+.|..+....+. ..............+..
T Consensus 52 ~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~ 131 (265)
T d1ouva_ 52 KNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVE 131 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred hhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHH
Confidence 3455555555544332 33444444443332 346667777777777654322211111 11111123445666666
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 005265 514 YFSSMSKEHGLAPLKDHYTCMVDLLGR----AGCLDEAKTLIEAMPMQPDAVIWGSLLAACKV----HRNIMLGEYVAKK 585 (705)
Q Consensus 514 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 585 (705)
.+..... ..+...+..|...|.. ..+...+...++...-..+..+...+...+.. ..+++.|...|++
T Consensus 132 ~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~ 207 (265)
T d1ouva_ 132 YFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSK 207 (265)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred Hhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhh
Confidence 6665432 2345666667776664 45666777777766324466666666666554 5689999999999
Q ss_pred HHhhCCCCCchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 005265 586 LLEIEPSNSGPYVLLSNMYAE----LGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 586 ~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 625 (705)
+.+.. ++..+..|+.+|.+ ..++++|.+.+++..+.|.
T Consensus 208 aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 208 ACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 98874 45678899999986 4489999999999988775
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.12 E-value=2.2e-05 Score=66.76 Aligned_cols=143 Identities=12% Similarity=-0.041 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 005265 458 VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDL 537 (705)
Q Consensus 458 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 537 (705)
..+......+.+.|++.+|+..|++.+.. .|... ....+.. .....+ ....|..+..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~~~-----------~~~~~~~-~~~~~~--------~~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEMEY-----------GLSEKES-KASESF--------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCC-----------SCCHHHH-HHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhh-----------ccchhhh-hhcchh--------HHHHHHhHHHH
Confidence 44556677788888888888888776652 11100 0000000 011111 12356678888
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChh-HHH
Q 005265 538 LGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWG-EVV 614 (705)
Q Consensus 538 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~-~A~ 614 (705)
|.+.|++++|+..++.. .+.| +..+|..+..++...|++++|...|+++++++|++..+...+..+....+... ...
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~k 153 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999987 3344 67889999999999999999999999999999999999999988887777554 355
Q ss_pred HHHHHHHh
Q 005265 615 RVRKLMRK 622 (705)
Q Consensus 615 ~~~~~~~~ 622 (705)
+.+..|.+
T Consensus 154 k~~~~~f~ 161 (168)
T d1kt1a1 154 RTYANMFK 161 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.12 E-value=1.6e-05 Score=67.73 Aligned_cols=131 Identities=11% Similarity=-0.019 Sum_probs=95.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH
Q 005265 461 NAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLG 539 (705)
Q Consensus 461 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 539 (705)
......+...|++++|++.|+++++. .+. .......... ..+.| ....|..+..+|.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~----------~~~~~~~~~~----------~~~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY--VEG----------SRAAAEDADG----------AKLQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--HHH----------HHHHSCHHHH----------GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--hhh----------hhhhhhhHHH----------HHhChhhHHHHHHHHHHHH
Confidence 34566677888999999988887651 110 0000000000 01223 3567788889999
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHH
Q 005265 540 RAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEV 613 (705)
Q Consensus 540 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 613 (705)
+.|++++|+..++++ .+.| +..+|..+..++...|++++|...|+++++++|++..++..+..+..+.....++
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 5566 5778999999999999999999999999999999998888888877665554443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=7.6e-06 Score=66.00 Aligned_cols=92 Identities=11% Similarity=0.083 Sum_probs=77.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch-------HHHHH
Q 005265 531 YTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP-------YVLLS 601 (705)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-------~~~l~ 601 (705)
+-.+...|.+.|++++|++.|++. .+.| +..+|..+..+|.+.|++++|...++++++++|+++.. |..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445677889999999999999887 3444 67888999999999999999999999999998887654 55677
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 005265 602 NMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 602 ~~~~~~g~~~~A~~~~~~~~~ 622 (705)
..+...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 778888999999999988763
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.02 E-value=1.9e-05 Score=65.89 Aligned_cols=128 Identities=8% Similarity=-0.157 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 005265 458 VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDL 537 (705)
Q Consensus 458 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 537 (705)
..+......+.+.|++.+|+..|++.++. .|..... ........... ....+|..+..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~~-----------~~~~~~~~~~~--------~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEW-----------DDQILLDKKKN--------IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTC-----------CCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhhh-----------hhHHHHHhhhh--------HHHHHHhhHHHH
Confidence 45666778888999999999999998873 2211100 00000000000 123467788899
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 005265 538 LGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAE 606 (705)
Q Consensus 538 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 606 (705)
|.+.|++++|++.++.+ .+.| +..+|..+..++...|++++|...|+++++++|++..+...+..+..+
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999987 4455 678999999999999999999999999999999998877777665543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.97 E-value=0.002 Score=60.39 Aligned_cols=255 Identities=11% Similarity=0.041 Sum_probs=125.1
Q ss_pred HHhccCCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCChhhHH
Q 005265 10 IVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWN 89 (705)
Q Consensus 10 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 89 (705)
+++=--.||..-...+.+.|-+.|.++.|..+|..+. -|..++..+.+.+++..|.+++.+. .+..+|.
T Consensus 5 ~e~fl~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k 73 (336)
T d1b89a_ 5 LEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWK 73 (336)
T ss_dssp HTTTTTCC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHH
T ss_pred HHHHHcCCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHH
Confidence 3333344666666667777778888888888777542 3456777777777777777776654 3555777
Q ss_pred HHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHH
Q 005265 90 SIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKM 169 (705)
Q Consensus 90 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 169 (705)
.+..++.+.....-|.- .......++.....++..|-..|.+++.+.+++..... -.++...++.++..+++.+.
T Consensus 74 ~~~~~l~~~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~--- 148 (336)
T d1b89a_ 74 EVCFACVDGKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP--- 148 (336)
T ss_dssp HHHHHHHHTTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHhCcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh---
Confidence 77777777665544422 11111223334456777777777777777777765432 23455566666666665432
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 005265 170 GTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIE 249 (705)
Q Consensus 170 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 249 (705)
.++.+.+...+ +. =+.+++.++.++. ..|.-++-.|.+.|+++.|..++- .. .
T Consensus 149 -~kl~e~l~~~s---~~-------------y~~~k~~~~c~~~-----~l~~elv~Ly~~~~~~~~A~~~~i---~~--~ 201 (336)
T d1b89a_ 149 -QKMREHLELFW---SR-------------VNIPKVLRAAEQA-----HLWAELVFLYDKYEEYDNAIITMM---NH--P 201 (336)
T ss_dssp -HHHHHHHHHHS---TT-------------SCHHHHHHHHHTT-----TCHHHHHHHHHHTTCHHHHHHHHH---HS--T
T ss_pred -HHHHHHHHhcc---cc-------------CCHHHHHHHHHHc-----CChHHHHHHHHhcCCHHHHHHHHH---Hc--c
Confidence 22333333211 11 1222333222221 124445566677777777766542 21 2
Q ss_pred CCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 005265 250 PDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFD 312 (705)
Q Consensus 250 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 312 (705)
++.......+..+.+..+.+...++....++. . +...+.|+......-+.....+.++
T Consensus 202 ~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~---~--p~~i~~lL~~v~~~~d~~r~V~~~~ 259 (336)
T d1b89a_ 202 TDAWKEGQFKDIITKVANVELYYRAIQFYLEF---K--PLLLNDLLMVLSPRLDHTRAVNYFS 259 (336)
T ss_dssp TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---C--GGGHHHHHHHHGGGCCHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHc---C--HHHHHHHHHHhccCCCHHHHHHHHH
Confidence 23322333444555556665555555544442 1 2233445555444455555554443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.85 E-value=5.5e-05 Score=64.61 Aligned_cols=113 Identities=13% Similarity=-0.009 Sum_probs=79.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005265 497 GVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLD-EAKTLIEAMPMQPDAVIWGSLLAACKVHRN 575 (705)
Q Consensus 497 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 575 (705)
.........|++++|.+.|.....-+ +.... ..+ ..+.+- ....-++. .....+..+...+...|+
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~---rG~~l-----~~~-~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW---RGPVL-----DDL-RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC---CSSTT-----GGG-TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC---ccccc-----ccC-cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 33456678888999988888776432 22100 000 001111 10111111 123467788888999999
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 576 IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 576 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+++|...++++++.+|.+...|..++.+|.+.|++++|++.|+++.+
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999854
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=0.0062 Score=56.89 Aligned_cols=246 Identities=7% Similarity=0.021 Sum_probs=139.5
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCChhhHHHHHHHHHhcCCh
Q 005265 22 FAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLLKWGFI 101 (705)
Q Consensus 22 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 101 (705)
|..++..+.+.+++..|.++..+. -+..+|..+..++........|.-+ ......++.....++..|-..|.+
T Consensus 43 ~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~ 115 (336)
T d1b89a_ 43 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYF 115 (336)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCCh
Confidence 556787888888888887766543 3566888888888877766554332 222223445556789999999999
Q ss_pred hHHHHHHhcCC---CCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHH
Q 005265 102 DDASRLFASMP---ERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLS 178 (705)
Q Consensus 102 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 178 (705)
++...+++... ..+...++.++..|++.+ .++..+.+... + +..-..-++..|-+.+-++
T Consensus 116 e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~---s---~~y~~~k~~~~c~~~~l~~---------- 178 (336)
T d1b89a_ 116 EELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF---W---SRVNIPKVLRAAEQAHLWA---------- 178 (336)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH---S---TTSCHHHHHHHHHTTTCHH----------
T ss_pred HHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc---c---ccCCHHHHHHHHHHcCChH----------
Confidence 99999999653 345667889999999875 44444443332 1 2222344555565554443
Q ss_pred HcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHH-
Q 005265 179 KSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLAS- 257 (705)
Q Consensus 179 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~- 257 (705)
-++-.|.+.|+++.|..+.-.-+ +++......+..+.+.++++...++.....+. .| ...+.
T Consensus 179 ------------elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~l 241 (336)
T d1b89a_ 179 ------------ELVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDL 241 (336)
T ss_dssp ------------HHHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHH
T ss_pred ------------HHHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHH
Confidence 34555566666666655432211 12223333444444444444444443333321 12 11222
Q ss_pred ------------HHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 005265 258 ------------VVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFD 312 (705)
Q Consensus 258 ------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 312 (705)
++..+.+.+++.....+++.....+ +..+.++|...|...++++.-++..+
T Consensus 242 L~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n----~~~vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 242 LMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN----NKSVNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp HHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC----CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC----hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 3333344455555555555543322 34567777777777777655554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.78 E-value=0.0098 Score=54.02 Aligned_cols=222 Identities=9% Similarity=-0.117 Sum_probs=123.6
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhh----cccHHHHHHHHHHHHHhCCCCCCCCCCcH
Q 005265 351 VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACAN----LADLQLGRQAHTHVVKHGLRFLSGEESDI 426 (705)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 426 (705)
..+..+...+.+.+++++|+.+|++..+.| +...+..|-..+.. ..+...+...+....+.+. +
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---------~ 70 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---------S 70 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---------H
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---------c
Confidence 345555555666666667777666666554 22233333333333 3466666666666665442 2
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHHccCCC-ChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHH
Q 005265 427 FVGNSLIDMYMK----CGSVEDGCRIFETMVER-DWVSWNAMIVGCAQ----NGYGTEALGLFKKMLLCGEKPDHVTMIG 497 (705)
Q Consensus 427 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 497 (705)
.....+...+.. ..+.+.|...++...+. .......+...+.. ......+...+...... .+...+..
T Consensus 71 ~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~ 147 (265)
T d1ouva_ 71 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTI 147 (265)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred chhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhh
Confidence 223333333322 34566666666655432 23333333333332 33455666666665553 23444445
Q ss_pred HHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005265 498 VLCACSH----AGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGR----AGCLDEAKTLIEAMPMQPDAVIWGSLLAA 569 (705)
Q Consensus 498 ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 569 (705)
+...+.. ..+...+..+++...+. .+......+...|.. ..+.++|...|++....-++..+..|...
T Consensus 148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~ 223 (265)
T d1ouva_ 148 LGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAM 223 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHH
Confidence 5554443 45666777777765432 245555556656654 56788888888887323456677777776
Q ss_pred HHh----cCCHHHHHHHHHHHHhhCC
Q 005265 570 CKV----HRNIMLGEYVAKKLLEIEP 591 (705)
Q Consensus 570 ~~~----~g~~~~a~~~~~~~~~~~p 591 (705)
|.. ..+.++|.+.|+++.+..+
T Consensus 224 y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 654 3478889999998887754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.77 E-value=8e-05 Score=58.03 Aligned_cols=84 Identities=7% Similarity=-0.094 Sum_probs=38.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc
Q 005265 464 IVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRA 541 (705)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 541 (705)
...+.+.|++++|+..|++.+. ..|+ ..+|..+..++.+.|++++|+..|+...+. .|+ ...+..+...|...
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhccccccccc---ccccccchHHHHHHHHHC
Confidence 3344444555555555555444 2333 234444444444555555555555444322 232 44444444444444
Q ss_pred CChHHHHHHHH
Q 005265 542 GCLDEAKTLIE 552 (705)
Q Consensus 542 g~~~~A~~~~~ 552 (705)
|++++|++.++
T Consensus 98 g~~~~A~~~l~ 108 (112)
T d1hxia_ 98 HNANAALASLR 108 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 44444444444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.77 E-value=4.2e-05 Score=62.94 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 575 NIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 575 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
++++|.+.|+++++++|++...+..|... .+|.+++.+..++|+
T Consensus 101 ~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 101 NFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred hHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 46889999999999999998766666555 456666766666654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.74 E-value=2.2e-05 Score=64.74 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC-----------hhHHHHHHHHHHh
Q 005265 574 RNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGR-----------WGEVVRVRKLMRK 622 (705)
Q Consensus 574 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~ 622 (705)
+.+++|+..|+++++++|+++.+|..++.+|...|+ +++|.+.|++..+
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 456889999999999999999999999999988764 5778888888774
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.72 E-value=8.7e-05 Score=62.01 Aligned_cols=88 Identities=20% Similarity=0.030 Sum_probs=65.4
Q ss_pred HHHHHhcCChHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------
Q 005265 535 VDLLGRAGCLDEAKTLIEAM----PMQPD----------AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN------- 593 (705)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~~----~~~p~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------- 593 (705)
...+.+.|++++|++.|++. +..|+ ..+|+.+..++...|++++|...+++++++.|..
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 34455666777776666655 11121 3578888888999999999999999998764321
Q ss_pred ----CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 594 ----SGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 594 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
..++..++.+|...|++++|.+.|++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22578899999999999999999999875
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.00016 Score=54.12 Aligned_cols=73 Identities=15% Similarity=0.076 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 005265 531 YTCMVDLLGRAGCLDEAKTLIEAM----P----MQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLS 601 (705)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 601 (705)
+-.+...+.+.|++++|+..|++. + ..++ ..+++.+..++.+.|++++|...++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 335566677777777777776654 1 1223 557888999999999999999999999999999998887775
Q ss_pred HH
Q 005265 602 NM 603 (705)
Q Consensus 602 ~~ 603 (705)
..
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.00025 Score=53.07 Aligned_cols=63 Identities=13% Similarity=-0.038 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 560 AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN-------SGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 560 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
...+..+...+.+.|++++|...|++++++.|.+ ..++..|+.+|.+.|++++|+..++++.+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 3445567788999999999999999999885543 34688999999999999999999999985
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=0.00035 Score=55.78 Aligned_cols=56 Identities=11% Similarity=-0.011 Sum_probs=30.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhH
Q 005265 462 AMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMS 519 (705)
Q Consensus 462 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 519 (705)
.+...|.+.|++++|+..|++.++ +.|+ ...+..+..+|...|++++|+..++.++
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 344555556666666666666655 3333 3345555555556666666666555544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=6.3e-05 Score=76.60 Aligned_cols=127 Identities=9% Similarity=-0.027 Sum_probs=53.5
Q ss_pred cCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHH
Q 005265 439 CGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYF 515 (705)
Q Consensus 439 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 515 (705)
.+.++.|+..+..... ++...|..+...+.+.|+.++|...+++.... .| ..++..+...+...|++++|...|
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHHHHHHH
Confidence 3445555555544332 23445555555566666666666655554431 11 134555555666666666666666
Q ss_pred HHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 005265 516 SSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-P-MQPDAVIWGSLLAACK 571 (705)
Q Consensus 516 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~ 571 (705)
++..+ +.|+ ...|+.|..+|...|+..+|...|.+. . ..|...++.+|...+.
T Consensus 176 ~~A~~---l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 176 RHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHH---HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 65543 2444 556666666666666666666666554 2 2345555555555543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.31 E-value=0.00037 Score=63.48 Aligned_cols=125 Identities=11% Similarity=-0.018 Sum_probs=83.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChH
Q 005265 468 AQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLD 545 (705)
Q Consensus 468 ~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 545 (705)
.+.|++++|+..+++.++ ..|+. ..+..+...++..|++++|...++...+. .|+ ...+..+..++...+..+
T Consensus 7 L~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 356888888888888888 56655 57777888888888888888888877643 565 445555555555555554
Q ss_pred HHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 005265 546 EAKTLIEAM--PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPY 597 (705)
Q Consensus 546 ~A~~~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 597 (705)
++..-.... ...|+ ...+......+...|+.++|.+.++++.+..|..+..+
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 443332221 12232 23334445557788999999999999999988876643
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.18 E-value=0.0014 Score=54.35 Aligned_cols=65 Identities=15% Similarity=-0.008 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 530 HYTCMVDLLGRAGCLDEAKTLIEAM--------PMQPD-----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
.|+.+..+|.+.|++++|.+.+++. ...++ ...++.+..++...|++++|...|++++++.|...
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 4455555566666666655555443 11222 22567778889999999999999999999865443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.05 E-value=0.0026 Score=53.75 Aligned_cols=73 Identities=10% Similarity=0.120 Sum_probs=56.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhH
Q 005265 456 DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSK----EHGLAPLKDH 530 (705)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 530 (705)
....+..+...+...|++++|+..++++++ ..|.. ..|..++.++...|+..+|++.|+++.+ +.|+.|...+
T Consensus 66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 66 KVLAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 345677788888888888888888888888 55644 5788888888888888888888887643 3588887654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.96 E-value=0.00023 Score=64.93 Aligned_cols=119 Identities=12% Similarity=0.039 Sum_probs=84.4
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 005265 502 CSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIML 578 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 578 (705)
..+.|++++|+..+++.++. .|+ ...+..++..|+..|++++|.+.++.. ...|+ ...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~---~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 45679999999999998764 555 899999999999999999999999998 55665 4455445444443333333
Q ss_pred HHHHHHHHHh-hCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 579 GEYVAKKLLE-IEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 579 a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+......... ..|+....+...+..+...|+.++|.+.++++.+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2221111111 13444445566788899999999999999998764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.62 Score=45.29 Aligned_cols=114 Identities=10% Similarity=-0.023 Sum_probs=53.4
Q ss_pred CChHHHHHHHHHHHHCC-CCCChh-h-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 005265 471 GYGTEALGLFKKMLLCG-EKPDHV-T-MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEA 547 (705)
Q Consensus 471 g~~~~A~~~~~~m~~~g-~~p~~~-~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 547 (705)
.+.+.|..++....... ..++.. . ...+.......+..+.+...+...... ..+.....-.+....+.+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHHH
Confidence 35556666666555432 111111 1 111222223344455555555544322 22333333334444555666666
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005265 548 KTLIEAMPMQP--DAVIWGSLLAACKVHRNIMLGEYVAKKLL 587 (705)
Q Consensus 548 ~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 587 (705)
...+..++..| ...-..-+..++...|+.+.|...|..+.
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 66666664222 12222344555666666666666666654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.19 E-value=0.022 Score=43.49 Aligned_cols=65 Identities=11% Similarity=-0.013 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCCC-chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 558 PDAVIWGSLLAACKVH---RNIMLGEYVAKKLLEIEPSNS-GPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 558 p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
|...+.-....++.+. .+.++|+.+++.+++.+|.+. ..+..|+.+|.+.|++++|++.++++.+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4444544555555433 345677777777777777653 4567777777788888888887777764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.54 E-value=0.31 Score=36.50 Aligned_cols=141 Identities=10% Similarity=0.024 Sum_probs=99.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDE 546 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 546 (705)
+...|..++..++..+.... .+..-|+-++.-....-+-+-..+.++.+-+-+.+ ..++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl--------------s~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCc--------------hhhhcHHH
Confidence 44567888888888887763 23445565665555555666666666666433322 34556665
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005265 547 AKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVV 626 (705)
Q Consensus 547 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 626 (705)
....+-.++ .+.....-.++...++|+-+.-.++++.+++.+..++.....++++|.+.|...++-+++.+.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 555555553 233445566788889999999999999988877777888999999999999999999999999998874
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.26 E-value=0.31 Score=37.96 Aligned_cols=81 Identities=6% Similarity=-0.072 Sum_probs=48.8
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh----cCChhHHH
Q 005265 543 CLDEAKTLIEAMPMQPDAVIWGSLLAACKV----HRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAE----LGRWGEVV 614 (705)
Q Consensus 543 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~ 614 (705)
+.++|.+++++.-..-++.....|...|.. ..+.++|.+.|+++.+.. ++.....|+.+|.. ..+.++|.
T Consensus 38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~ 115 (133)
T d1klxa_ 38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAV 115 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHH
Confidence 444455554444112233333334333332 346778888888877653 34557778888776 45788888
Q ss_pred HHHHHHHhCCC
Q 005265 615 RVRKLMRKRGV 625 (705)
Q Consensus 615 ~~~~~~~~~~~ 625 (705)
+++++..+.|.
T Consensus 116 ~~~~~Aa~~G~ 126 (133)
T d1klxa_ 116 KTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 88888877764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.19 E-value=0.62 Score=36.10 Aligned_cols=16 Identities=6% Similarity=0.040 Sum_probs=9.1
Q ss_pred ChHHHHHHHHHhhhCC
Q 005265 365 ENEEALGLFRLLKRES 380 (705)
Q Consensus 365 ~~~~A~~~~~~m~~~g 380 (705)
++++|+.+|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 3455666666655554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.89 E-value=0.59 Score=35.29 Aligned_cols=71 Identities=10% Similarity=-0.052 Sum_probs=47.3
Q ss_pred CChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 005265 526 PLKDHYTCMVDLLGRAG---CLDEAKTLIEAM-PMQP-DA-VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP 596 (705)
Q Consensus 526 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 596 (705)
|+..+--....++.++. +.++++.++++. ...| +. ..+..|.-+|.+.|++++|.+.++++++++|++..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 33334444445555443 345666666665 2233 33 466777788899999999999999999999998653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.41 E-value=6.4 Score=37.64 Aligned_cols=408 Identities=8% Similarity=-0.037 Sum_probs=202.9
Q ss_pred HHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHH--ccCChhhHHHHHhccCC-CC-hhhHHHHHHHHHhcCChhH
Q 005265 28 SCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYA--KCGCLYGARKVFDKMSN-KN-VFTWNSIITGLLKWGFIDD 103 (705)
Q Consensus 28 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~g~~~~A~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~ 103 (705)
...+.|+...+.++...+... | ...|-..-..-. ......+....++.-+. |- ...-...+..+.+.++.+.
T Consensus 15 ~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~ 90 (450)
T d1qsaa1 15 QAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRG 90 (450)
T ss_dssp HHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHH
Confidence 344667777777766666322 1 222322222222 23455555555555443 11 1122344567778888877
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCC
Q 005265 104 ASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYS 183 (705)
Q Consensus 104 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 183 (705)
....+..-+ .+...--....+....|+...|...+..+-..|.. ..+....++..+.+.|..
T Consensus 91 ~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-----------------~p~~c~~l~~~~~~~~~l 152 (450)
T d1qsaa1 91 LLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-----------------QPNACDKLFSVWRASGKQ 152 (450)
T ss_dssp HHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-----------------CCTHHHHHHHHHHHTTCS
T ss_pred HHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------CchHHHHHHHHHHhcCCC
Confidence 776654322 23333335666777888888888888777665432 223334455555554432
Q ss_pred CChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 005265 184 SDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACA 263 (705)
Q Consensus 184 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 263 (705)
+...+-.-+......|+...|..+...+...........+..... ...+...... ..++......+..++.
T Consensus 153 -t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~-----~~~~~~~~~~~~~~l~ 223 (450)
T d1qsaa1 153 -DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART-----TGATDFTRQMAAVAFA 223 (450)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH-----SCCCHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhc-----CCCChhhhHHHHHHHH
Confidence 344444455555666888888888777665444444444444322 2222222111 1122222222233332
Q ss_pred c--cCChHHHHHHHHHHHHcCCCCCChh--HHHHHHHHHHhcCChHHHHHHHhhCCC--CCcccHHHHHHHHHhcCCHHH
Q 005265 264 S--LAAFKEGLQIHARLMRCEKLRNDLV--LGNALVDMYAKCGKLNEARCVFDRMPI--RNVVSETSMVSGYAKASSVKS 337 (705)
Q Consensus 264 ~--~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~ 337 (705)
+ ..+.+.+...+..........++.. ....+...+...+..+.+...+..... .+.....-.+......+++..
T Consensus 224 rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 224 SVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHH
Confidence 2 2456666666666655431222111 111122222234555556555544331 122222223444456677777
Q ss_pred HHHHHHhcCCCC---eehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHh
Q 005265 338 ARLMFTKMLERN---VVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKH 414 (705)
Q Consensus 338 A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 414 (705)
+...+..+.... ....-=+..++...|+.++|...|...... ++ |-..+.+- +.|..- ..
T Consensus 304 ~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa~-~Lg~~~----------~~ 366 (450)
T d1qsaa1 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAAQ-RIGEEY----------EL 366 (450)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHHH-HTTCCC----------CC
T ss_pred HHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHHH-HcCCCC----------CC
Confidence 777777775421 111122556777788888888888776532 32 33333221 111100 00
Q ss_pred CCCCCCCCCCcH---hHHHHHHHHHHhcCCHHHHHHHHHccC-CCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 005265 415 GLRFLSGEESDI---FVGNSLIDMYMKCGSVEDGCRIFETMV-ERDWVSWNAMIVGCAQNGYGTEALGLFKKM 483 (705)
Q Consensus 415 ~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 483 (705)
+....+...... .....-+..+...|....|...+..+. ..+......+.....+.|.++.|+....+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 367 KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 000000000000 011123455667788888888776554 346666677777778888888888776554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.34 E-value=2.1 Score=31.94 Aligned_cols=115 Identities=10% Similarity=-0.015 Sum_probs=58.0
Q ss_pred hhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---------------------
Q 005265 396 ANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE--------------------- 454 (705)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------------- 454 (705)
.-.|..+++.++..+..+. .+..-||.++--....-+-+...++++.+-+
T Consensus 13 ildG~ve~Gveii~k~~~s---------s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n 83 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---------STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN 83 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---------SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT
T ss_pred HHhhhHHhHHHHHHHHccc---------CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhc
Confidence 3457778888888777764 3344444444433333444444444444321
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005265 455 RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSK 520 (705)
Q Consensus 455 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (705)
.+....+..+..+...|+-++-.++++.+.+. -+|++.....+..||.+.|...++.+++.++-+
T Consensus 84 ~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 84 TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 12222333444555555555555555554442 344555555555555555555555555555443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.44 E-value=0.91 Score=32.09 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=38.5
Q ss_pred hhHHHHHHHhccCCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005265 3 TQRSVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDV 63 (705)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 63 (705)
+++-+..+....+-|++......|++|.|.+++..|.++++-+.... .++..+|..+++-
T Consensus 25 ~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilqe 84 (105)
T d1v54e_ 25 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 84 (105)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHHH
Confidence 44555556666666777777777777777777777777777665332 2345566655543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.80 E-value=3.9 Score=28.79 Aligned_cols=63 Identities=11% Similarity=0.172 Sum_probs=47.6
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHH
Q 005265 232 PASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVD 296 (705)
Q Consensus 232 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 296 (705)
+.-++.+-+..+....+.|++....+.+++|.+.+++..|.++++-+.... .++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~--~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcHHHHHHHHH
Confidence 334566667777777889999999999999999999999999998877653 334556665543
|